Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
HIAT1	0	genome.wustl.edu	37	1	100547720	100547720	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	100547720	100547720	G	A	SNP	HIAT1	ENST00000370152	human	ensembl	74_37	+1	known	silent	c.1428	p.A476	0.778	NULL	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Tet-R_TetA/multi-R_MdtG	-	no_errors	HIAT1	HGNC	ENSG00000156875				77	0	0	50	5	9.09091
SASS6	0	genome.wustl.edu	37	1	100588820	100588820	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	100588820	100588820	T	C	SNP	SASS6	ENST00000287482	human	ensembl	74_37	-1	known	missense	c.152	p.D51G	0.999	NULL	NULL	-	no_errors	SASS6	HGNC	ENSG00000156876				57	0	0	28	3	9.67742
RTCA	0	genome.wustl.edu	37	1	100733760	100733760	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	100733760	100733760	C	T	SNP	RTCA	ENST00000260563	human	ensembl	74_37	+1	known	silent	c.238	p.L80	0.998	pfam_RNA3'_phos_cyclase_dom,superfamily_RNA3'P_cycl/enolpyr_Trfase_a/b,tigrfam_RNA3'_term_phos_cyc_type_1	pfam_RNA3'_phos_cyclase_dom,pfam_RNA3'-term_phos_cycl_insert,superfamily_RNA3'P_cycl/enolpyr_Trfase_a/b,superfamily_RNA3'-term_phos_cycl_insert,tigrfam_RNA3'_term_phos_cyc_type_1	-	no_errors	RTCA	HGNC	ENSG00000137996				109	0	0	88	5	5.37634
RTCA	0	genome.wustl.edu	37	1	100740491	100740491	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	100740491	100740491	A	G	SNP	RTCA	ENST00000260563	human	ensembl	74_37	+1	known	silent	c.624	p.R208	1.000	pfam_RNA3'_phos_cyclase_dom,pfam_RNA3'-term_phos_cycl_insert,superfamily_RNA3'P_cycl/enolpyr_Trfase_a/b,superfamily_RNA3'-term_phos_cycl_insert,tigrfam_RNA3'_term_phos_cyc_type_1	pfam_RNA3'_phos_cyclase_dom,pfam_RNA3'-term_phos_cycl_insert,superfamily_RNA3'P_cycl/enolpyr_Trfase_a/b,superfamily_RNA3'-term_phos_cycl_insert,tigrfam_RNA3'_term_phos_cyc_type_1	-	no_errors	RTCA	HGNC	ENSG00000137996				124	0	0	70	5	6.66667
SLC30A7	0	genome.wustl.edu	37	1	101431466	101431466	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	101431466	101431466	T	A	SNP	SLC30A7	ENST00000357650	human	ensembl	74_37	+1	novel	missense	c.1075	p.F359I	1.000	pfam_Cation_efflux,tigrfam_Cation_efflux	pfam_Cation_efflux,tigrfam_Cation_efflux	-	no_errors	SLC30A7	HGNC	ENSG00000162695				115	0	0	74	11	12.9412
DPH5	0	genome.wustl.edu	37	1	101458252	101458252	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	101458252	101458252	T	C	SNP	DPH5	ENST00000370109	human	ensembl	74_37	-1	known	missense	c.575	p.Q192R	1.000	pfam_4pyrrol_Mease,superfamily_4pyrrol_Mease,pirsf_Dphthn_synthase,tigrfam_Dphthn_synthase	pfam_4pyrrol_Mease,superfamily_4pyrrol_Mease,pirsf_Dphthn_synthase,tigrfam_Dphthn_synthase	-	no_errors	DPH5	HGNC	ENSG00000117543				162	0	0	119	11	8.46154
UBE4B	0	genome.wustl.edu	37	1	10165777	10165777	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	10165777	10165777	T	A	SNP	UBE4B	ENST00000343090	human	ensembl	74_37	+1	known	missense	c.784	p.S262T	0.999	NULL	pfam_Ub_conjug_fac_E4_core,pfam_Ubox_domain,smart_Ubox_domain	-	no_errors	UBE4B	HGNC	ENSG00000130939				58	0	0	49	5	9.25926
OLFM3	0	genome.wustl.edu	37	1	102290762	102290762	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	102290762	102290762	G	A	SNP	OLFM3	ENST00000338858	human	ensembl	74_37	-1	known	missense	c.472	p.P158S	1.000	superfamily_Quino_amine_DH_bsu	pfam_Olfac-like,pfam_Noelin-1,superfamily_Quino_amine_DH_bsu,smart_Olfac-like,pfscan_Olfac-like	-	no_errors	OLFM3	HGNC	ENSG00000118733				59	0	0	48	7	12.7273
UBE4B	0	genome.wustl.edu	37	1	10231209	10231209	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	10231209	10231209	G	A	SNP	UBE4B	ENST00000343090	human	ensembl	74_37	+1	known	missense	c.3347	p.R1116Q	1.000	pfam_Ub_conjug_fac_E4_core	pfam_Ub_conjug_fac_E4_core,pfam_Ubox_domain,smart_Ubox_domain	-	no_errors	UBE4B	HGNC	ENSG00000130939				153	0	0	107	33	23.5714
AMY2B	0	genome.wustl.edu	37	1	104118128	104118128	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	104118128	104118128	G	A	SNP	AMY2B	ENST00000361355	human	ensembl	74_37	+1	known	missense	c.1067	p.S356N	1.000	superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom	pfam_Glyco_hydro_13_cat_dom,pfam_A-amylase_b_C,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom,smart_A-amylase_b_C,prints_Alpha_amylase	-	no_errors	AMY2B	HGNC	ENSG00000240038				404	0	0	279	15	5.10204
DFFA	0	genome.wustl.edu	37	1	10523179	10523179	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	10523179	10523179	T	C	SNP	DFFA	ENST00000377038	human	ensembl	74_37	-1	known	missense	c.719	p.H240R	0.542	pfam_DNA_fragmentation_mid_dom,pirsf_DNA_fragmentation_factor_asu	pfam_DNA_fragmentation_mid_dom,pfam_CIDE-N_dom,smart_CIDE-N_dom,pirsf_DNA_fragmentation_factor_asu,pfscan_CIDE-N_dom	-	no_errors	DFFA	HGNC	ENSG00000160049				50	0	0	64	5	7.24638
CASZ1	0	genome.wustl.edu	37	1	10699955	10699955	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	10699955	10699955	C	T	SNP	CASZ1	ENST00000377022	human	ensembl	74_37	-1	known	missense	c.4324	p.D1442N	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	CASZ1	HGNC	ENSG00000130940				32	0	0	23	3	11.5385
CASZ1	0	genome.wustl.edu	37	1	10720009	10720009	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	10720009	10720009	C	T	SNP	CASZ1	ENST00000377022	human	ensembl	74_37	-1	known	missense	c.1090	p.A364T	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	CASZ1	HGNC	ENSG00000130940				86	0	0	89	11	11
NTNG1	0	genome.wustl.edu	37	1	107867139	107867139	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	107867139	107867139	T	C	SNP	NTNG1	ENST00000370068	human	ensembl	74_37	+1	known	missense	c.482	p.I161T	1.000	pfam_Laminin_N,smart_Laminin_N,pfscan_Laminin_N	pfam_Laminin_N,pfam_EGF_laminin,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	NTNG1	HGNC	ENSG00000162631				97	0	0	99	8	7.47664
NTNG1	0	genome.wustl.edu	37	1	107973538	107973538	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	107973538	107973538	A	G	SNP	NTNG1	ENST00000370068	human	ensembl	74_37	+1	known	missense	c.1254	p.I418M	1.000	NULL	pfam_Laminin_N,pfam_EGF_laminin,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	NTNG1	HGNC	ENSG00000162631				56	0	0	28	4	12.5
FAM102B	0	genome.wustl.edu	37	1	109154855	109154855	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	109154855	109154855	G	A	SNP	FAM102B	ENST00000370035	human	ensembl	74_37	+1	known	missense	c.344	p.R115H	1.000	pfam_NT-C2	pfam_NT-C2	-	no_errors	FAM102B	HGNC	ENSG00000162636				121	0	0	86	27	23.8938
STXBP3	0	genome.wustl.edu	37	1	109321945	109321945	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	109321945	109321945	G	A	SNP	STXBP3	ENST00000370008	human	ensembl	74_37	+1	known	missense	c.722	p.G241D	1.000	pfam_Sec1-like,superfamily_Sec1-like	pfam_Sec1-like,superfamily_Sec1-like	-	no_errors	STXBP3	HGNC	ENSG00000116266				187	0	0	134	12	8.21918
CLCC1	0	genome.wustl.edu	37	1	109482311	109482311	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	109482311	109482311	T	C	SNP	CLCC1	ENST00000356970	human	ensembl	74_37	-1	known	missense	c.988	p.I330V	1.000	pfam_Chloride_chnl_CLIC-like	pfam_Chloride_chnl_CLIC-like	-	no_errors	CLCC1	HGNC	ENSG00000121940				58	0	0	39	4	9.30233
KIAA1324	0	genome.wustl.edu	37	1	109742558	109742558	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	109742558	109742558	G	A	SNP	KIAA1324	ENST00000369939	human	ensembl	74_37	+1	known	missense	c.2584	p.A862T	0.000	NULL	superfamily_Man6P_isomerase_rcpt-bd_dom,superfamily_Growth_fac_rcpt_N_dom	-	no_errors	KIAA1324	HGNC	ENSG00000116299				61	0	0	64	5	7.24638
CELSR2	0	genome.wustl.edu	37	1	109795564	109795564	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	109795564	109795564	C	A	SNP	CELSR2	ENST00000271332	human	ensembl	74_37	+1	known	missense	c.2863	p.Q955K	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_DUF3497,pfam_Laminin_G,pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EG-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR2	HGNC	ENSG00000143126				122	1	0.813008	119	28	19.0476
CELSR2	0	genome.wustl.edu	37	1	109801132	109801132	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	109801132	109801132	C	T	SNP	CELSR2	ENST00000271332	human	ensembl	74_37	+1	known	missense	c.3389	p.T1130M	1.000	pfscan_Cadherin	pfam_Cadherin,pfam_DUF3497,pfam_Laminin_G,pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EG-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR2	HGNC	ENSG00000143126				8	0	0	6	3	33.3333
GNAI3	0	genome.wustl.edu	37	1	110129475	110129475	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	110129475	110129475	C	T	SNP	GNAI3	ENST00000369851	human	ensembl	74_37	+1	known	missense	c.845	p.P282L	1.000	pfam_Gprotein_alpha_su,superfamily_P-loop_NTPase,smart_Gprotein_alpha_su,prints_Gprotein_alpha_I,prints_Fungi_Gprotein_alpha	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su,prints_Gprotein_alpha_I,prints_Fungi_Gprotein_alpha	-	no_errors	GNAI3	HGNC	ENSG00000065135				96	0	0	69	6	8
GSTM4	0	genome.wustl.edu	37	1	110203856	110203856	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	110203856	110203856	G	A	SNP	GSTM4	ENST00000369836	human	ensembl	74_37	+1	known	missense	c.637	p.A213T	0.950	superfamily_Glutathione-S-Trfase_C-like	pfam_Glutathione_S-Trfase_N,pfam_GST_C,superfamily_Glutathione-S-Trfase_C-like,superfamily_Thioredoxin-like_fold,prints_GST_mu	-	no_errors	GSTM4	HGNC	ENSG00000168765				144	0	0	147	9	5.76923
AHCYL1	0	genome.wustl.edu	37	1	110555579	110555579	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	110555579	110555579	T	C	SNP	AHCYL1	ENST00000369799	human	ensembl	74_37	+1	known	missense	c.538	p.Y180H	1.000	pfam_Adenosylhomocysteinase,pirsf_Adenosylhomocysteinase,tigrfam_Adenosylhomocysteinase	pfam_Adenosylhomocysteinase,pfam_Ado_hCys_hydrolase_NAD-bd,pfam_D-isomer_2_OHA_DH_NAD-bd,pfam_IlvN,pirsf_Adenosylhomocysteinase,tigrfam_Adenosylhomocysteinase	-	no_errors	AHCYL1	HGNC	ENSG00000168710				86	0	0	61	9	12.8571
SLC6A17	0	genome.wustl.edu	37	1	110737212	110737212	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	110737212	110737212	C	T	SNP	SLC6A17	ENST00000331565	human	ensembl	74_37	+1	known	silent	c.1311	p.G437	0.998	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_orphan	-	no_errors	SLC6A17	HGNC	ENSG00000197106				48	0	0	31	9	22.5
KCNA10	0	genome.wustl.edu	37	1	111059927	111059927	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	111059927	111059927	C	A	SNP	KCNA10	ENST00000369771	human	ensembl	74_37	-1	known	missense	c.1483	p.D495Y	0.530	NULL	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,pfam_PKD1_2_channel,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA10	HGNC	ENSG00000143105				158	1	0.628931	139	14	9.15033
DRAM2	0	genome.wustl.edu	37	1	111668915	111668915	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	111668915	111668915	C	T	SNP	DRAM2	ENST00000286692	human	ensembl	74_37	-1	known	missense	c.133	p.D45N	1.000	pfam_Frag1/DRAM/Sfk1	pfam_Frag1/DRAM/Sfk1	-	no_errors	DRAM2	HGNC	ENSG00000156171				162	0	0	104	12	10.3448
CHIAP2	0	genome.wustl.edu	37	1	111825358	111825358	+	RNA	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	111825358	111825358	G	A	SNP	CHIAP2	ENST00000369743	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	CHIAP2	HGNC	ENSG00000203878				23	0	0	29	8	21.6216
C1orf162	0	genome.wustl.edu	37	1	112020302	112020302	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	112020302	112020302	G	A	SNP	C1orf162	ENST00000343534	human	ensembl	74_37	+1	known	missense	c.232	p.G78S	0.001	NULL	NULL	-	no_errors	C1orf162	HGNC	ENSG00000143110				82	0	0	100	8	7.40741
MTOR	0	genome.wustl.edu	37	1	11206822	11206822	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	11206822	11206822	T	C	SNP	MTOR	ENST00000361445	human	ensembl	74_37	-1	known	missense	c.4597	p.T1533A	1.000	pfam_PIK-rel_kinase_FAT,pfscan_PIK_FAT	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_DUF3385_TOR,pfam_Rapamycin-bd_dom,pfam_FATC,superfamily_ARM-type_fold,superfamily_Kinase-like_dom,superfamily_Rapamycin-bd_dom,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	MTOR	HGNC	ENSG00000198793				91	0	0	82	7	7.86517
RAP1A	0	genome.wustl.edu	37	1	112247110	112247110	+	Splice_Site	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	112247110	112247110	T	A	SNP	RAP1A	ENST00000356415	human	ensembl	74_37	+1	known	splice_site	c.468+2	e5+2	1.000	-	-	-	no_errors	RAP1A	HGNC	ENSG00000116473				82	0	0	57	4	6.55738
CTTNBP2NL	0	genome.wustl.edu	37	1	112991688	112991688	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	112991688	112991688	T	A	SNP	CTTNBP2NL	ENST00000271277	human	ensembl	74_37	+1	known	missense	c.224	p.V75D	0.999	pfam_Cortactin-binding_p2_N	pfam_Cortactin-binding_p2_N	-	no_errors	CTTNBP2NL	HGNC	ENSG00000143079				59	0	0	50	5	9.09091
CTTNBP2NL	0	genome.wustl.edu	37	1	112998596	112998596	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	112998596	112998596	A	G	SNP	CTTNBP2NL	ENST00000271277	human	ensembl	74_37	+1	known	missense	c.482	p.Q161R	1.000	pfam_Cortactin-binding_p2_N	pfam_Cortactin-binding_p2_N	-	no_errors	CTTNBP2NL	HGNC	ENSG00000143079				68	0	0	52	6	10.3448
CTTNBP2NL	0	genome.wustl.edu	37	1	112998647	112998647	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	112998647	112998647	T	A	SNP	CTTNBP2NL	ENST00000271277	human	ensembl	74_37	+1	known	missense	c.533	p.L178H	1.000	pfam_Cortactin-binding_p2_N	pfam_Cortactin-binding_p2_N	-	no_errors	CTTNBP2NL	HGNC	ENSG00000143079				80	0	0	65	6	8.4507
MTOR	0	genome.wustl.edu	37	1	11313937	11313937	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	11313937	11313937	T	C	SNP	MTOR	ENST00000361445	human	ensembl	74_37	-1	known	missense	c.799	p.I267V	1.000	superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_DUF3385_TOR,pfam_Rapamycin-bd_dom,pfam_FATC,superfamily_ARM-type_fold,superfamily_Kinase-like_dom,superfamily_Rapamycin-bd_dom,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	MTOR	HGNC	ENSG00000198793				149	0	0	142	14	8.97436
CAPZA1	0	genome.wustl.edu	37	1	113197105	113197105	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	113197105	113197105	G	A	SNP	CAPZA1	ENST00000263168	human	ensembl	74_37	+1	known	missense	c.238	p.G80S	1.000	pfam_CapZ_alpha	pfam_CapZ_alpha,prints_CapZ_alpha	-	no_errors	CAPZA1	HGNC	ENSG00000116489				112	0	0	79	5	5.95238
MOV10	0	genome.wustl.edu	37	1	113238807	113238807	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	113238807	113238807	T	C	SNP	MOV10	ENST00000357443	human	ensembl	74_37	+1	known	missense	c.1817	p.V606A	0.516	superfamily_P-loop_NTPase	superfamily_P-loop_NTPase	-	no_errors	MOV10	HGNC	ENSG00000155363				57	0	0	50	16	24.2424
MOV10	0	genome.wustl.edu	37	1	113240932	113240932	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	113240932	113240932	C	T	SNP	MOV10	ENST00000357443	human	ensembl	74_37	+1	known	silent	c.2340	p.G780	0.441	superfamily_P-loop_NTPase	superfamily_P-loop_NTPase	-	no_errors	MOV10	HGNC	ENSG00000155363				61	0	0	45	3	6.25
LRIG2	0	genome.wustl.edu	37	1	113653183	113653183	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	113653183	113653183	T	C	SNP	LRIG2	ENST00000361127	human	ensembl	74_37	+1	known	silent	c.1797	p.N599	1.000	smart_Ig_sub	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Immunoglobulin,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LRIG2	HGNC	ENSG00000198799				73	0	0	52	5	8.77193
MAGI3	0	genome.wustl.edu	37	1	114184904	114184904	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	114184904	114184904	A	T	SNP	MAGI3	ENST00000369611	human	ensembl	74_37	+1	known	missense	c.1732	p.T578S	1.000	superfamily_PDZ,pfscan_PDZ	pfam_PDZ,pfam_WW_dom,pfam_GK/Ca_channel_bsu,superfamily_PDZ,superfamily_P-loop_NTPase,superfamily_WW_dom,smart_PDZ,smart_GK/Ca_channel_bsu,smart_WW_dom,pfscan_PDZ,pfscan_WW_dom,pfscan_Guanylate_kin-like	-	no_errors	MAGI3	HGNC	ENSG00000081026				68	0	0	65	8	10.9589
PHTF1	0	genome.wustl.edu	37	1	114247337	114247337	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	114247337	114247337	T	C	SNP	PHTF1	ENST00000369604	human	ensembl	74_37	-1	known	missense	c.1754	p.K585R	1.000	NULL	pfam_TF_homeodomain_male	-	no_errors	PHTF1	HGNC	ENSG00000116793				186	0	0	128	11	7.91367
RSBN1	0	genome.wustl.edu	37	1	114310883	114310883	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	114310883	114310883	G	T	SNP	RSBN1	ENST00000261441	human	ensembl	74_37	-1	known	missense	c.1787	p.A596D	1.000	NULL	NULL	-	no_errors	RSBN1	HGNC	ENSG00000081019				101	0	0	79	7	8.13953
RSBN1	0	genome.wustl.edu	37	1	114320291	114320291	+	Splice_Site	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	114320291	114320291	A	G	SNP	RSBN1	ENST00000261441	human	ensembl	74_37	-1	known	splice_site	c.1515+2	e3+2	1.000	-	-	-	no_errors	RSBN1	HGNC	ENSG00000081019				56	0	0	28	9	24.3243
AP4B1	0	genome.wustl.edu	37	1	114447319	114447319	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	114447319	114447319	C	A	SNP	AP4B1	ENST00000256658	human	ensembl	74_37	-1	known	missense	c.21	p.E7D	1.000	superfamily_ARM-type_fold,pirsf_AP_complex_bsu_1_2_4	pfam_Clathrin/coatomer_adapt-like_N,pfam_B-adaptin_app_sub_C,superfamily_ARM-type_fold,superfamily_Coatomer/calthrin_app_sub_C,pirsf_AP_complex_bsu_1_2_4	-	no_errors	AP4B1	HGNC	ENSG00000134262				165	1	0.60241	141	40	22.0994
DCLRE1B	0	genome.wustl.edu	37	1	114450717	114450717	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	114450717	114450717	A	G	SNP	DCLRE1B	ENST00000369563	human	ensembl	74_37	+1	known	missense	c.442	p.N148D	1.000	NULL	pfam_DRMBL	-	no_errors	DCLRE1B	HGNC	ENSG00000118655				114	0	0	112	11	8.94309
SYT6	0	genome.wustl.edu	37	1	114680358	114680358	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	114680358	114680358	C	T	SNP	SYT6	ENST00000393296	human	ensembl	74_37	-1	known	missense	c.830	p.R277H	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,prints_Synaptotagmin,prints_C2_dom,pfscan_C2_dom	-	no_errors	SYT6	HGNC	ENSG00000134207				98	0	0	96	7	6.79612
SYT6	0	genome.wustl.edu	37	1	114682276	114682276	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	114682276	114682276	C	T	SNP	SYT6	ENST00000393296	human	ensembl	74_37	-1	known	missense	c.473	p.R158Q	0.992	NULL	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,prints_Synaptotagmin,prints_C2_dom,pfscan_C2_dom	-	no_errors	SYT6	HGNC	ENSG00000134207				38	0	0	39	8	17.0213
BCAS2	0	genome.wustl.edu	37	1	115124132	115124132	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	115124132	115124132	A	G	SNP	BCAS2	ENST00000369541	human	ensembl	74_37	-1	known	silent	c.81	p.G27	0.940	pfam_SPF27	pfam_SPF27	-	no_errors	BCAS2	HGNC	ENSG00000116752				57	0	0	53	3	5.35714
AMPD1	0	genome.wustl.edu	37	1	115221074	115221074	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	115221074	115221074	T	C	SNP	AMPD1	ENST00000520113	human	ensembl	74_37	-1	known	silent	c.1071	p.Q357	0.001	pfam_A/AMP_deaminase_dom,pirsf_AMP_deaminase,tigrfam_AMP_deaminase	pfam_A/AMP_deaminase_dom,pirsf_AMP_deaminase,tigrfam_AMP_deaminase	-	no_errors	AMPD1	HGNC	ENSG00000116748				104	0	0	76	11	12.6437
CSDE1	0	genome.wustl.edu	37	1	115261368	115261368	+	Splice_Site	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	115261368	115261368	T	C	SNP	CSDE1	ENST00000369530	human	ensembl	74_37	-1	known	splice_site	c.2262-2	e17-2	1.000	-	-	-	no_errors	CSDE1	HGNC	ENSG00000009307				63	0	0	39	5	11.3636
SYCP1	0	genome.wustl.edu	37	1	115418740	115418740	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	115418740	115418740	A	T	SNP	SYCP1	ENST00000369518	human	ensembl	74_37	+1	known	missense	c.708	p.R236S	0.986	pfam_SCP-1	pfam_SCP-1	-	no_errors	SYCP1	HGNC	ENSG00000198765				99	0	0	58	4	6.45161
TSHB	0	genome.wustl.edu	37	1	115576796	115576796	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	115576796	115576796	C	A	SNP	TSHB	ENST00000256592	human	ensembl	74_37	+1	known	missense	c.365	p.T122K	0.986	pfam_Cys_knot,smart_Gonadotropin_bsu	pfam_Cys_knot,smart_Gonadotropin_bsu	-	no_errors	TSHB	HGNC	ENSG00000134200				142	0	0	99	20	16.8067
PTCHD2	0	genome.wustl.edu	37	1	11580746	11580746	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	11580746	11580746	C	T	SNP	PTCHD2	ENST00000294484	human	ensembl	74_37	+1	known	silent	c.2203	p.L735	0.998	pfam_Patched	pfam_Patched,pfam_MMPL_dom,pfscan_SSD	-	no_errors	PTCHD2	HGNC	ENSG00000204624				53	0	0	45	5	10
PTCHD2	0	genome.wustl.edu	37	1	11591735	11591735	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	11591735	11591735	C	T	SNP	PTCHD2	ENST00000294484	human	ensembl	74_37	+1	known	missense	c.3343	p.R1115C	0.829	NULL	pfam_Patched,pfam_MMPL_dom,pfscan_SSD	-	no_errors	PTCHD2	HGNC	ENSG00000204624				49	0	0	46	8	14.8148
PTCHD2	0	genome.wustl.edu	37	1	11595642	11595642	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	11595642	11595642	G	A	SNP	PTCHD2	ENST00000294484	human	ensembl	74_37	+1	known	missense	c.3757	p.V1253I	1.000	pfam_Patched,pfam_MMPL_dom	pfam_Patched,pfam_MMPL_dom,pfscan_SSD	-	no_errors	PTCHD2	HGNC	ENSG00000204624				59	0	0	61	18	22.7848
NHLH2	0	genome.wustl.edu	37	1	116380781	116380781	+	Silent	SNP	G	G	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	116380781	116380781	G	C	SNP	NHLH2	ENST00000320238	human	ensembl	74_37	-1	known	silent	c.213	p.R71	1.000	pfscan_bHLH_dom	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	NHLH2	HGNC	ENSG00000177551				15	0	0	3	5	62.5
ATP1A1	0	genome.wustl.edu	37	1	116937812	116937812	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	116937812	116937812	G	A	SNP	ATP1A1	ENST00000295598	human	ensembl	74_37	+1	known	missense	c.1741	p.D581N	0.981	pfam_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Na/K_IIC	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP1A1	HGNC	ENSG00000163399				193	1	0.515464	129	17	11.6438
CD101	0	genome.wustl.edu	37	1	117552590	117552590	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	117552590	117552590	G	T	SNP	CD101	ENST00000256652	human	ensembl	74_37	+1	known	missense	c.162	p.Q54H	1.000	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	CD101	HGNC	ENSG00000134256				89	0	0	80	8	9.09091
CD101	0	genome.wustl.edu	37	1	117561006	117561006	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	117561006	117561006	C	T	SNP	CD101	ENST00000256652	human	ensembl	74_37	+1	known	missense	c.1841	p.T614M	0.896	smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	CD101	HGNC	ENSG00000134256				88	0	0	78	23	22.7723
CD101	0	genome.wustl.edu	37	1	117568456	117568456	+	Silent	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	117568456	117568456	A	T	SNP	CD101	ENST00000256652	human	ensembl	74_37	+1	known	silent	c.2754	p.G918	0.039	smart_Ig_sub	pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	CD101	HGNC	ENSG00000134256				77	0	0	72	4	5.26316
TTF2	0	genome.wustl.edu	37	1	117617696	117617696	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	117617696	117617696	G	A	SNP	TTF2	ENST00000369466	human	ensembl	74_37	+1	known	missense	c.490	p.D164N	0.000	NULL	pfam_SNF2_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_Znf_GRF,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	TTF2	HGNC	ENSG00000116830				105	0	0	48	12	20
TTF2	0	genome.wustl.edu	37	1	117634487	117634487	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	117634487	117634487	A	T	SNP	TTF2	ENST00000369466	human	ensembl	74_37	+1	known	missense	c.2720	p.D907V	0.011	pfam_SNF2_N,superfamily_P-loop_NTPase	pfam_SNF2_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_Znf_GRF,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	TTF2	HGNC	ENSG00000116830				78	0	0	62	8	11.4286
TRIM45	0	genome.wustl.edu	37	1	117661186	117661186	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	117661186	117661186	A	T	SNP	TRIM45	ENST00000256649	human	ensembl	74_37	-1	known	missense	c.692	p.I231N	0.969	NULL	pfam_Filamin/ABP280_repeat-like,pfam_Znf_B-box,superfamily_Ig_E-set,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Filamin,pfscan_Filamin/ABP280_repeat-like,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM45	HGNC	ENSG00000134253				60	0	0	68	4	5.55556
MAN1A2	0	genome.wustl.edu	37	1	118009007	118009007	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	118009007	118009007	T	C	SNP	MAN1A2	ENST00000356554	human	ensembl	74_37	+1	known	missense	c.1126	p.Y376H	1.000	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47,prints_Glyco_hydro_47	-	no_errors	MAN1A2	HGNC	ENSG00000198162				74	0	0	32	8	20
FAM46C	0	genome.wustl.edu	37	1	118165851	118165851	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	118165851	118165851	C	T	SNP	FAM46C	ENST00000369448	human	ensembl	74_37	+1	known	missense	c.361	p.P121S	1.000	pfam_DUF1693	pfam_DUF1693	-	no_errors	FAM46C	HGNC	ENSG00000183508				108	0	0	95	25	20.8333
GDAP2	0	genome.wustl.edu	37	1	118461256	118461256	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	118461256	118461256	T	C	SNP	GDAP2	ENST00000369443	human	ensembl	74_37	-1	known	silent	c.279	p.A93	0.932	pfam_Macro_dom,smart_Macro_dom,pfscan_Macro_dom	pfam_Macro_dom,superfamily_CRAL-TRIO_dom,smart_Macro_dom,smart_CRAL-TRIO_dom,pfscan_Macro_dom	-	no_errors	GDAP2	HGNC	ENSG00000196505				98	0	0	63	8	11.2676
WDR3	0	genome.wustl.edu	37	1	118483468	118483468	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	118483468	118483468	C	T	SNP	WDR3	ENST00000349139	human	ensembl	74_37	+1	known	missense	c.694	p.P232S	1.000	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_SSU_processome_Utp12,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR3	HGNC	ENSG00000065183				239	0	0	176	11	5.88235
SPAG17	0	genome.wustl.edu	37	1	118527389	118527389	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	118527389	118527389	T	C	SNP	SPAG17	ENST00000336338	human	ensembl	74_37	-1	known	missense	c.5686	p.T1896A	0.010	NULL	NULL	-	no_errors	SPAG17	HGNC	ENSG00000155761				117	1	0.847458	68	9	11.6883
SPAG17	0	genome.wustl.edu	37	1	118530822	118530822	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	118530822	118530822	C	T	SNP	SPAG17	ENST00000336338	human	ensembl	74_37	-1	known	missense	c.5527	p.A1843T	1.000	NULL	NULL	-	no_errors	SPAG17	HGNC	ENSG00000155761				37	0	0	19	4	17.3913
UBE2J2	0	genome.wustl.edu	37	1	1190610	1190610	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	1190610	1190610	G	A	SNP	UBE2J2	ENST00000400930	human	ensembl	74_37	-1	known	silent	c.801	p.Y267	0.930	NULL	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	-	no_errors	UBE2J2	HGNC	ENSG00000160087				42	0	0	32	7	17.9487
TBX15	0	genome.wustl.edu	37	1	119441700	119441700	+	Silent	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	119441700	119441700	A	C	SNP	TBX15	ENST00000207157	human	ensembl	74_37	-1	known	silent	c.657	p.P219	0.999	NULL	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX15	HGNC	ENSG00000092607				60	0	0	54	3	5.26316
WARS2	0	genome.wustl.edu	37	1	119584963	119584963	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	119584963	119584963	T	C	SNP	WARS2	ENST00000235521	human	ensembl	74_37	-1	known	missense	c.439	p.T147A	0.188	pfam_aa-tRNA-synth_Ic,tigrfam_Trp-tRNA-ligase	pfam_aa-tRNA-synth_Ic,prints_Trp-tRNA-ligase,tigrfam_Trp-tRNA-ligase	-	no_errors	WARS2	HGNC	ENSG00000116874				102	0	0	74	7	8.64198
PLOD1	0	genome.wustl.edu	37	1	12018613	12018613	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	12018613	12018613	A	G	SNP	PLOD1	ENST00000376369	human	ensembl	74_37	+1	known	missense	c.1025	p.E342G	1.000	NULL	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	PLOD1	HGNC	ENSG00000083444				26	0	0	25	3	10.7143
CPSF3L	0	genome.wustl.edu	37	1	1249150	1249150	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	1249150	1249150	C	T	SNP	CPSF3L	ENST00000540437	human	ensembl	74_37	-1	known	missense	c.937	p.A313T	1.000	pfam_Beta_Casp	pfam_Beta_Casp,pfam_Beta-lactamas-like,pfam_RMMBL,smart_Beta-lactamas-like	-	no_errors	CPSF3L	HGNC	ENSG00000127054				72	0	0	70	8	10.2564
AADACL4	0	genome.wustl.edu	37	1	12726188	12726188	+	Nonsense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	12726188	12726188	T	A	SNP	AADACL4	ENST00000376221	human	ensembl	74_37	+1	known	nonsense	c.666	p.Y222*	0.057	pfam_AB_hydrolase_3,pirsf_Arylacetamide_deacetylase	pfam_AB_hydrolase_3,pirsf_Arylacetamide_deacetylase	-	no_errors	AADACL4	HGNC	ENSG00000204518				159	0	0	167	12	6.70391
PRAMEF1	0	genome.wustl.edu	37	1	12855624	12855624	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	12855624	12855624	T	C	SNP	PRAMEF1	ENST00000332296	human	ensembl	74_37	+1	known	missense	c.904	p.Y302H	0.000	NULL	NULL	-	no_errors	PRAMEF1	HGNC	ENSG00000116721				132	0	0	109	18	14.1732
MXRA8	0	genome.wustl.edu	37	1	1290077	1290077	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	1290077	1290077	C	T	SNP	MXRA8	ENST00000445648	human	ensembl	74_37	-1	known	missense	c.934	p.G312S	0.000	NULL	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	MXRA8	HGNC	ENSG00000162576				9	0	0	6	4	40
HNRNPCL1	0	genome.wustl.edu	37	1	12907311	12907311	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	12907311	12907311	C	T	SNP	HNRNPCL1	ENST00000317869	human	ensembl	74_37	-1	known	missense	c.832	p.E278K	1.000	pirsf_hnRNP_C_Raly	pfam_RRM_dom,smart_RRM_dom,pirsf_hnRNP_C_Raly,pfscan_RRM_dom	-	no_errors	HNRNPCL1	HGNC	ENSG00000179172				329	0	0	297	16	5.11182
CCNL2	0	genome.wustl.edu	37	1	1325706	1325706	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	1325706	1325706	C	T	SNP	CCNL2	ENST00000400809	human	ensembl	74_37	-1	known	missense	c.910	p.A304T	0.528	pirsf_Cyclin_L	pfam_Cyclin_N,pfam_Cyclin_C-dom,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_L	-	no_errors	CCNL2	HGNC	ENSG00000221978				123	0	0	92	28	23.3333
ATAD3C	0	genome.wustl.edu	37	1	1391275	1391275	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	1391275	1391275	C	T	SNP	ATAD3C	ENST00000378785	human	ensembl	74_37	+1	known	silent	c.543	p.T181	0.937	pfam_ATPase_AAA_core,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_DUF3523,pfam_ATPase_AAA_core,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	ATAD3C	HGNC	ENSG00000215915				41	0	0	32	12	27.2727
PRDM2	0	genome.wustl.edu	37	1	14059379	14059379	+	Splice_Site	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	14059379	14059379	T	C	SNP	PRDM2	ENST00000235372	human	ensembl	74_37	+1	known	splice_site	c.231+2	e3+2	1.000	-	-	-	no_errors	PRDM2	HGNC	ENSG00000116731				76	0	0	55	6	9.83607
PRDM2	0	genome.wustl.edu	37	1	14105882	14105882	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	14105882	14105882	C	T	SNP	PRDM2	ENST00000235372	human	ensembl	74_37	+1	known	missense	c.1592	p.A531V	1.000	pirsf_RIZ_retinblastoma-bd_prot	pfam_SET_dom,smart_SET_dom,smart_Znf_C2H2-like,pirsf_RIZ_retinblastoma-bd_prot,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM2	HGNC	ENSG00000116731				50	0	0	29	9	23.6842
PRDM2	0	genome.wustl.edu	37	1	14108310	14108310	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	14108310	14108310	A	G	SNP	PRDM2	ENST00000235372	human	ensembl	74_37	+1	known	silent	c.4020	p.K1340	1.000	smart_Znf_C2H2-like,pirsf_RIZ_retinblastoma-bd_prot	pfam_SET_dom,smart_SET_dom,smart_Znf_C2H2-like,pirsf_RIZ_retinblastoma-bd_prot,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM2	HGNC	ENSG00000116731				190	0	0	147	32	17.8771
PRDM2	0	genome.wustl.edu	37	1	14108484	14108484	+	Silent	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	14108484	14108484	A	T	SNP	PRDM2	ENST00000235372	human	ensembl	74_37	+1	known	silent	c.4194	p.G1398	0.306	pirsf_RIZ_retinblastoma-bd_prot	pfam_SET_dom,smart_SET_dom,smart_Znf_C2H2-like,pirsf_RIZ_retinblastoma-bd_prot,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM2	HGNC	ENSG00000116731				101	0	0	80	9	10.1124
PRDM2	0	genome.wustl.edu	37	1	14108568	14108568	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	14108568	14108568	T	A	SNP	PRDM2	ENST00000235372	human	ensembl	74_37	+1	known	missense	c.4278	p.N1426K	0.902	pirsf_RIZ_retinblastoma-bd_prot	pfam_SET_dom,smart_SET_dom,smart_Znf_C2H2-like,pirsf_RIZ_retinblastoma-bd_prot,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM2	HGNC	ENSG00000116731				186	0	0	134	15	10.0671
PRDM2	0	genome.wustl.edu	37	1	14108802	14108802	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	14108802	14108802	T	C	SNP	PRDM2	ENST00000235372	human	ensembl	74_37	+1	known	silent	c.4512	p.S1504	0.000	pirsf_RIZ_retinblastoma-bd_prot	pfam_SET_dom,smart_SET_dom,smart_Znf_C2H2-like,pirsf_RIZ_retinblastoma-bd_prot,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM2	HGNC	ENSG00000116731				199	0	0	158	11	6.50888
NBPF9	0	genome.wustl.edu	37	1	144828753	144828753	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	144828753	144828753	T	C	SNP	NBPF9	ENST00000281815	human	ensembl	74_37	+1	known	missense	c.593	p.V198A	0.010	NULL	pfam_NBPF_dom	-	no_errors	NBPF9	HGNC	ENSG00000168614				456	3	0.653595	361	25	6.47668
PDE4DIP	0	genome.wustl.edu	37	1	144867919	144867919	+	Splice_Site	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	144867919	144867919	A	G	SNP	PDE4DIP	ENST00000369356	human	ensembl	74_37	-1	known	splice_site	c.5518+2	e33+2	1.000	-	-	-	no_errors	PDE4DIP	HGNC	ENSG00000178104				415	0	0	419	28	6.26398
PDE4DIP	0	genome.wustl.edu	37	1	144882879	144882879	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	144882879	144882879	T	G	SNP	PDE4DIP	ENST00000369356	human	ensembl	74_37	-1	known	missense	c.3140	p.N1047T	0.999	NULL	pfam_Spindle_assoc,superfamily_ARM-type_fold	-	no_errors	PDE4DIP	HGNC	ENSG00000178104				295	0	0	269	22	7.56014
PDE4DIP	0	genome.wustl.edu	37	1	144903048	144903048	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	144903048	144903048	A	G	SNP	PDE4DIP	ENST00000529945	human	ensembl	74_37	-1	putative	silent	c.3333	p.H1111	0.736	NULL	superfamily_ARM-type_fold	-	no_errors	PDE4DIP	HGNC	ENSG00000178104				145	0	0	124	14	10.1449
PDE4DIP	0	genome.wustl.edu	37	1	144917847	144917847	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	144917847	144917847	C	T	SNP	PDE4DIP	ENST00000369356	human	ensembl	74_37	-1	known	missense	c.1439	p.R480Q	0.955	NULL	pfam_Spindle_assoc,superfamily_ARM-type_fold	-	no_errors	PDE4DIP	HGNC	ENSG00000178104				494	0	0	312	46	12.8492
PDE4DIP	0	genome.wustl.edu	37	1	145075861	145075861	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	145075861	145075861	A	G	SNP	PDE4DIP	ENST00000369348	human	ensembl	74_37	-1	known	missense	c.2	p.M1T	0.836	NULL	pfam_Spindle_assoc	-	no_errors	PDE4DIP	HGNC	ENSG00000178104				75	0	0	69	4	5.47945
ITGA10	0	genome.wustl.edu	37	1	145535890	145535890	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	145535890	145535890	A	T	SNP	ITGA10	ENST00000369304	human	ensembl	74_37	+1	known	missense	c.2078	p.D693V	0.036	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGA10	HGNC	ENSG00000143127				101	0	0	108	9	7.69231
ANKRD35	0	genome.wustl.edu	37	1	145555804	145555804	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	145555804	145555804	A	G	SNP	ANKRD35	ENST00000355594	human	ensembl	74_37	+1	known	missense	c.152	p.D51G	0.942	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD35	HGNC	ENSG00000198483				41	0	0	51	3	5.55556
ANKRD35	0	genome.wustl.edu	37	1	145562806	145562806	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	145562806	145562806	C	T	SNP	ANKRD35	ENST00000355594	human	ensembl	74_37	+1	known	silent	c.2494	p.L832	0.996	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD35	HGNC	ENSG00000198483				23	0	0	22	3	12
NUDT17	0	genome.wustl.edu	37	1	145587453	145587453	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	145587453	145587453	G	A	SNP	NUDT17	ENST00000334513	human	ensembl	74_37	-1	known	silent	c.627	p.S209	0.186	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like	-	no_errors	NUDT17	HGNC	ENSG00000186364				90	0	0	85	24	22.0183
RNF115	0	genome.wustl.edu	37	1	145646131	145646131	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	145646131	145646131	G	A	SNP	RNF115	ENST00000369291	human	ensembl	74_37	+1	known	missense	c.119	p.R40K	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF115	HGNC	ENSG00000121848				125	0	0	74	19	20.4301
PRKAB2	0	genome.wustl.edu	37	1	146633349	146633349	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	146633349	146633349	G	A	SNP	PRKAB2	ENST00000254101	human	ensembl	74_37	-1	known	missense	c.683	p.A228V	1.000	pfam_AMP_prot_kin_bsu_interact-dom	pfam_AMP_prot_kin_bsu_interact-dom,superfamily_Ig_E-set	-	no_errors	PRKAB2	HGNC	ENSG00000131791				87	0	0	64	9	12.3288
FMO5	0	genome.wustl.edu	37	1	146680462	146680462	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	146680462	146680462	A	G	SNP	FMO5	ENST00000254090	human	ensembl	74_37	-1	known	missense	c.782	p.I261T	0.954	pfam_Flavin_mOase-like,pirsf_DiMe-aniline_mOase	pfam_Flavin_mOase-like,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pirsf_DiMe-aniline_mOase,prints_Flavin_mOase,prints_Flavin_mOase_5,prints_Flavin_mOase_2,prints_Flavin_mOase_1	-	no_errors	FMO5	HGNC	ENSG00000131781				87	0	0	65	4	5.7971
CHD1L	0	genome.wustl.edu	37	1	146766192	146766192	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	146766192	146766192	A	G	SNP	CHD1L	ENST00000369258	human	ensembl	74_37	+1	known	missense	c.2608	p.T870A	1.000	pfscan_Macro_dom	pfam_SNF2_N,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Macro_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	CHD1L	HGNC	ENSG00000131778				129	0	0	107	13	10.8333
ACP6	0	genome.wustl.edu	37	1	147131101	147131101	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	147131101	147131101	G	T	SNP	ACP6	ENST00000369238	human	ensembl	74_37	-1	known	missense	c.533	p.A178D	1.000	pfam_His_Pase_superF_clade-2	pfam_His_Pase_superF_clade-2	-	no_errors	ACP6	HGNC	ENSG00000162836				133	0	0	116	14	10.7692
HIST2H2BE	0	genome.wustl.edu	37	1	149857887	149857887	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	149857887	149857887	G	T	SNP	HIST2H2BE	ENST00000369155	human	ensembl	74_37	-1	known	missense	c.304	p.L102M	1.000	superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	HIST2H2BE	HGNC	ENSG00000184678				68	0	0	49	4	7.54717
HIST2H2AC	0	genome.wustl.edu	37	1	149858906	149858906	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	149858906	149858906	A	G	SNP	HIST2H2AC	ENST00000331380	human	ensembl	74_37	+1	known	missense	c.382	p.S128G	0.992	NULL	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	-	no_errors	HIST2H2AC	HGNC	ENSG00000184260				96	0	0	77	17	18.0851
SV2A	0	genome.wustl.edu	37	1	149880804	149880804	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	149880804	149880804	C	T	SNP	SV2A	ENST00000369146	human	ensembl	74_37	-1	known	missense	c.1319	p.G440D	0.999	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_SV2	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_SV2	-	no_errors	SV2A	HGNC	ENSG00000159164				99	0	0	75	8	9.63855
MTMR11	0	genome.wustl.edu	37	1	149903306	149903306	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	149903306	149903306	C	T	SNP	MTMR11	ENST00000439741	human	ensembl	74_37	-1	known	missense	c.1136	p.R379H	1.000	NULL	pfam_Myotubularin_assoc,pfam_Myotubularin-like_Pase_dom	-	no_errors	MTMR11	HGNC	ENSG00000014914				46	0	0	42	5	10.6383
OTUD7B	0	genome.wustl.edu	37	1	149916322	149916322	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	149916322	149916322	C	A	SNP	OTUD7B	ENST00000369135	human	ensembl	74_37	-1	known	nonsense	c.1966	p.G656*	1.000	NULL	pfam_OTU,superfamily_UBA-like,smart_Znf_A20,pfscan_OTU,pfscan_Znf_A20	-	no_errors	OTUD7B	HGNC	ENSG00000163113				125	0	0	98	26	20.9677
VPS45	0	genome.wustl.edu	37	1	150065723	150065723	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	150065723	150065723	G	A	SNP	VPS45	ENST00000369130	human	ensembl	74_37	+1	known	missense	c.1472	p.G491D	1.000	pfam_Sec1-like,superfamily_Sec1-like	pfam_Sec1-like,superfamily_Sec1-like	-	no_errors	VPS45	HGNC	ENSG00000136631				151	0	0	102	11	9.73451
RPRD2	0	genome.wustl.edu	37	1	150444063	150444063	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	150444063	150444063	C	T	SNP	RPRD2	ENST00000369068	human	ensembl	74_37	+1	known	missense	c.2639	p.A880V	1.000	NULL	pfam_RNA_pol_II-bd,superfamily_ENTH_VHS,superfamily_Ricin_B_lectin,smart_CID_dom	-	no_errors	RPRD2	HGNC	ENSG00000163125				122	0	0	116	7	5.69106
RPRD2	0	genome.wustl.edu	37	1	150444378	150444378	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	150444378	150444378	C	T	SNP	RPRD2	ENST00000369068	human	ensembl	74_37	+1	known	missense	c.2954	p.T985M	1.000	NULL	pfam_RNA_pol_II-bd,superfamily_ENTH_VHS,superfamily_Ricin_B_lectin,smart_CID_dom	-	no_errors	RPRD2	HGNC	ENSG00000163125				286	0	0	237	58	19.661
ADAMTSL4	0	genome.wustl.edu	37	1	150530529	150530529	+	Silent	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	150530529	150530529	C	A	SNP	ADAMTSL4	ENST00000369039	human	ensembl	74_37	+1	known	silent	c.2355	p.P785	0.692	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt	-	no_errors	ADAMTSL4	HGNC	ENSG00000143382				113	1	0.877193	137	8	5.51724
ADAMTSL4	0	genome.wustl.edu	37	1	150531943	150531943	+	Splice_Site	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	150531943	150531943	G	A	SNP	ADAMTSL4	ENST00000369039	human	ensembl	74_37	+1	known	splice_site	c.3012+1	e16+1	1.000	-	-	-	no_errors	ADAMTSL4	HGNC	ENSG00000143382				42	0	0	42	11	20.7547
C1orf56	0	genome.wustl.edu	37	1	151021160	151021160	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	151021160	151021160	C	T	SNP	C1orf56	ENST00000368926	human	ensembl	74_37	+1	known	silent	c.837	p.T279	0.051	NULL	superfamily_Thrombospondin_1_rpt	-	no_errors	C1orf56	HGNC	ENSG00000143443				137	0	0	154	10	6.09756
PIP5K1A	0	genome.wustl.edu	37	1	151214608	151214608	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	151214608	151214608	C	T	SNP	PIP5K1A	ENST00000368888	human	ensembl	74_37	+1	known	missense	c.1373	p.S458F	1.000	NULL	pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub	-	no_errors	PIP5K1A	HGNC	ENSG00000143398				465	0	0	340	18	5.02793
PI4KB	0	genome.wustl.edu	37	1	151280078	151280078	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	151280078	151280078	T	G	SNP	PI4KB	ENST00000271657	human	ensembl	74_37	-1	known	missense	c.1190	p.Q397P	1.000	superfamily_Kinase-like_dom	pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PI4KB	HGNC	ENSG00000143393				54	0	0	39	7	15.2174
RFX5	0	genome.wustl.edu	37	1	151315256	151315256	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	151315256	151315256	T	C	SNP	RFX5	ENST00000290524	human	ensembl	74_37	-1	known	missense	c.1257	p.I419M	0.997	NULL	pfam_DNA-bd_RFX	-	no_errors	RFX5	HGNC	ENSG00000143390				291	0	0	271	31	10.2649
RFX5	0	genome.wustl.edu	37	1	151317258	151317258	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	151317258	151317258	A	G	SNP	RFX5	ENST00000290524	human	ensembl	74_37	-1	known	missense	c.299	p.L100P	1.000	pfam_DNA-bd_RFX	pfam_DNA-bd_RFX	-	no_errors	RFX5	HGNC	ENSG00000143390				45	0	0	39	5	11.3636
POGZ	0	genome.wustl.edu	37	1	151378320	151378320	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	151378320	151378320	C	T	SNP	POGZ	ENST00000271715	human	ensembl	74_37	-1	known	missense	c.3191	p.G1064E	0.993	pfam_HTH_CenpB_DNA-bd_dom,superfamily_Homeodomain-like,smart_HTH_CenpB_DNA-bd_dom	pfam_DDE_SF_endonuclease_CENPB-like,pfam_HTH_CenpB_DNA-bd_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_HTH_CenpB_DNA-bd_dom,pfscan_Znf_C2H2	-	no_errors	POGZ	HGNC	ENSG00000143442				73	0	0	75	8	9.63855
POGZ	0	genome.wustl.edu	37	1	151380621	151380621	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	151380621	151380621	C	T	SNP	POGZ	ENST00000271715	human	ensembl	74_37	-1	known	missense	c.2330	p.R777H	1.000	smart_Znf_C2H2-like	pfam_DDE_SF_endonuclease_CENPB-like,pfam_HTH_CenpB_DNA-bd_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_HTH_CenpB_DNA-bd_dom,pfscan_Znf_C2H2	-	no_errors	POGZ	HGNC	ENSG00000143442				98	0	0	86	7	7.52688
POGZ	0	genome.wustl.edu	37	1	151400884	151400884	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	151400884	151400884	C	A	SNP	POGZ	ENST00000271715	human	ensembl	74_37	-1	known	missense	c.574	p.G192C	1.000	NULL	pfam_DDE_SF_endonuclease_CENPB-like,pfam_HTH_CenpB_DNA-bd_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_HTH_CenpB_DNA-bd_dom,pfscan_Znf_C2H2	-	no_errors	POGZ	HGNC	ENSG00000143442				147	0	0	165	16	8.83978
CGN	0	genome.wustl.edu	37	1	151506503	151506503	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	151506503	151506503	C	T	SNP	CGN	ENST00000271636	human	ensembl	74_37	+1	known	missense	c.2795	p.A932V	0.002	pfam_Myosin_tail	pfam_Myosin_tail	-	no_errors	CGN	HGNC	ENSG00000143375				39	0	0	35	3	7.89474
CGN	0	genome.wustl.edu	37	1	151509216	151509216	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	151509216	151509216	G	A	SNP	CGN	ENST00000271636	human	ensembl	74_37	+1	known	missense	c.3317	p.R1106K	1.000	pfam_Myosin_tail	pfam_Myosin_tail	-	no_errors	CGN	HGNC	ENSG00000143375				61	0	0	57	5	8.06452
LINGO4	0	genome.wustl.edu	37	1	151773766	151773766	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	151773766	151773766	C	T	SNP	LINGO4	ENST00000368820	human	ensembl	74_37	-1	known	missense	c.1415	p.R472H	0.998	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Ig_V-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LINGO4	HGNC	ENSG00000213171				153	0	0	129	32	19.8758
TCHHL1	0	genome.wustl.edu	37	1	152058504	152058504	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	152058504	152058504	T	C	SNP	TCHHL1	ENST00000368806	human	ensembl	74_37	-1	known	missense	c.1654	p.S552G	0.000	NULL	pfam_S100_Ca-bd_sub	-	no_errors	TCHHL1	HGNC	ENSG00000182898				153	0	0	129	16	11.0345
TCHH	0	genome.wustl.edu	37	1	152081767	152081767	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	152081767	152081767	C	A	SNP	TCHH	ENST00000368804	human	ensembl	74_37	-1	known	missense	c.3926	p.R1309M	0.002	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom	-	no_errors	TCHH	HGNC	ENSG00000159450				205	2	0.966184	202	15	6.91244
TCHH	0	genome.wustl.edu	37	1	152083746	152083746	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	152083746	152083746	G	A	SNP	TCHH	ENST00000368804	human	ensembl	74_37	-1	known	silent	c.1947	p.R649	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom	-	no_errors	TCHH	HGNC	ENSG00000159450				125	0	0	101	13	11.4035
HRNR	0	genome.wustl.edu	37	1	152187976	152187976	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	152187976	152187976	A	G	SNP	HRNR	ENST00000368801	human	ensembl	74_37	-1	known	silent	c.6129	p.G2043	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom	-	no_errors	HRNR	HGNC	ENSG00000197915				433	0	0	423	35	7.64192
HRNR	0	genome.wustl.edu	37	1	152192748	152192748	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	152192748	152192748	C	T	SNP	HRNR	ENST00000368801	human	ensembl	74_37	-1	known	missense	c.1357	p.G453S	0.005	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom	-	no_errors	HRNR	HGNC	ENSG00000197915				153	0	0	139	10	6.71141
HRNR	0	genome.wustl.edu	37	1	152193216	152193216	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	152193216	152193216	C	T	SNP	HRNR	ENST00000368801	human	ensembl	74_37	-1	known	missense	c.889	p.G297S	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom	-	no_errors	HRNR	HGNC	ENSG00000197915				200	0	0	163	54	24.8848
FLG	0	genome.wustl.edu	37	1	152275456	152275456	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	152275456	152275456	T	C	SNP	FLG	ENST00000368799	human	ensembl	74_37	-1	known	missense	c.11906	p.Q3969R	0.000	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631				131	0	0	97	12	11.0092
FLG	0	genome.wustl.edu	37	1	152280937	152280937	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	152280937	152280937	G	A	SNP	FLG	ENST00000368799	human	ensembl	74_37	-1	known	missense	c.6425	p.P2142L	0.002	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631				558	1	0.178891	516	83	13.8564
FLG	0	genome.wustl.edu	37	1	152282226	152282226	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	152282226	152282226	T	C	SNP	FLG	ENST00000368799	human	ensembl	74_37	-1	known	silent	c.5136	p.R1712	0.000	pfam_Filaggrin	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631				340	0	0	270	70	20.5882
FLG	0	genome.wustl.edu	37	1	152285766	152285766	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	152285766	152285766	G	A	SNP	FLG	ENST00000368799	human	ensembl	74_37	-1	known	silent	c.1596	p.H532	0.000	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631				475	2	0.419287	453	49	9.76096
FLG2	0	genome.wustl.edu	37	1	152323458	152323458	+	Silent	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	152323458	152323458	T	G	SNP	FLG2	ENST00000388718	human	ensembl	74_37	-1	known	silent	c.6804	p.S2268	0.018	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG2	HGNC	ENSG00000143520				313	0	0	258	81	23.8938
FLG2	0	genome.wustl.edu	37	1	152325465	152325465	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	152325465	152325465	G	A	SNP	FLG2	ENST00000388718	human	ensembl	74_37	-1	known	silent	c.4797	p.Y1599	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG2	HGNC	ENSG00000143520				308	0	0	257	53	17.0968
KPRP	0	genome.wustl.edu	37	1	152733357	152733357	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	152733357	152733357	T	C	SNP	KPRP	ENST00000368773	human	ensembl	74_37	+1	known	silent	c.1293	p.C431	0.048	NULL	NULL	-	no_errors	KPRP	HGNC	ENSG00000203786				118	0	0	111	10	8.26446
LCE1C	0	genome.wustl.edu	37	1	152777882	152777882	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	152777882	152777882	G	A	SNP	LCE1C	ENST00000368768	human	ensembl	74_37	-1	known	missense	c.73	p.P25S	0.022	NULL	NULL	-	no_errors	LCE1C	HGNC	ENSG00000197084				44	0	0	43	4	8.51064
PGLYRP3	0	genome.wustl.edu	37	1	153274910	153274910	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	153274910	153274910	G	A	SNP	PGLYRP3	ENST00000290722	human	ensembl	74_37	-1	known	missense	c.703	p.R235W	0.000	pfam_Amidase_domain,superfamily_Amidase_domain,smart_PGRP_domain_met/bac,smart_Amidase_domain	pfam_Amidase_domain,superfamily_Amidase_domain,smart_PGRP_domain_met/bac,smart_Amidase_domain	-	no_errors	PGLYRP3	HGNC	ENSG00000159527				177	0	0	124	19	13.2867
S100A3	0	genome.wustl.edu	37	1	153520239	153520239	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	153520239	153520239	A	G	SNP	S100A3	ENST00000368712	human	ensembl	74_37	-1	known	silent	c.225	p.Y75	0.133	NULL	pfam_S100_Ca-bd_sub	-	no_errors	S100A3	HGNC	ENSG00000188015				140	0	0	114	8	6.55738
NPR1	0	genome.wustl.edu	37	1	153653743	153653743	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	153653743	153653743	T	C	SNP	NPR1	ENST00000368680	human	ensembl	74_37	+1	known	missense	c.1009	p.F337L	1.000	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_A/G_cyclase,pfam_ANF_lig-bd_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Peripla_BP_I,superfamily_A/G_cyclase,superfamily_Kinase-like_dom,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_A/G_cyclase,prints_Ntpep_rcpt,pfscan_Prot_kinase_dom,pfscan_A/G_cyclase	-	no_errors	NPR1	HGNC	ENSG00000169418				122	0	0	76	6	7.31707
INTS3	0	genome.wustl.edu	37	1	153713206	153713206	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	153713206	153713206	C	T	SNP	INTS3	ENST00000318967	human	ensembl	74_37	+1	known	missense	c.230	p.A77V	1.000	NULL	pfam_Int_cplx_su3	-	no_errors	INTS3	HGNC	ENSG00000143624				114	0	0	77	8	9.41176
KAZN	0	genome.wustl.edu	37	1	15390079	15390079	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	15390079	15390079	C	T	SNP	KAZN	ENST00000376030	human	ensembl	74_37	+1	known	silent	c.1059	p.P353	0.999	NULL	pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	KAZN	HGNC	ENSG00000189337				38	0	0	25	12	32.4324
DENND4B	0	genome.wustl.edu	37	1	153914821	153914821	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	153914821	153914821	G	A	SNP	DENND4B	ENST00000361217	human	ensembl	74_37	-1	known	missense	c.652	p.R218C	1.000	pfam_uDENN_dom,smart_uDENN_dom,pfscan_uDENN_dom	pfam_DENN_dom,pfam_dDENN_dom,pfam_uDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND4B	HGNC	ENSG00000198837				26	0	0	20	6	23.0769
SLC39A1	0	genome.wustl.edu	37	1	153935110	153935110	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	153935110	153935110	C	A	SNP	SLC39A1	ENST00000310483	human	ensembl	74_37	-1	known	nonsense	c.82	p.E28*	1.000	pfam_ZIP	pfam_ZIP	-	no_errors	SLC39A1	HGNC	ENSG00000143570				30	0	0	34	3	8.10811
JTB	0	genome.wustl.edu	37	1	153947178	153947178	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	153947178	153947178	G	A	SNP	JTB	ENST00000271843	human	ensembl	74_37	-1	known	missense	c.418	p.R140W	1.000	pfam_JTB	pfam_JTB	-	no_errors	JTB	HGNC	ENSG00000143543				148	1	0.671141	121	34	21.9355
JTB	0	genome.wustl.edu	37	1	153947216	153947216	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	153947216	153947216	C	T	SNP	JTB	ENST00000271843	human	ensembl	74_37	-1	known	missense	c.380	p.R127H	1.000	pfam_JTB	pfam_JTB	-	no_errors	JTB	HGNC	ENSG00000143543				130	0	0	112	27	19.4245
NUP210L	0	genome.wustl.edu	37	1	153967602	153967602	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	153967602	153967602	A	G	SNP	NUP210L	ENST00000368559	human	ensembl	74_37	-1	known	missense	c.5441	p.L1814P	0.952	NULL	pfam_Big_2,superfamily_Invasin/intimin_cell_adhesion,smart_Big_2	-	no_errors	NUP210L	HGNC	ENSG00000143552				66	0	0	55	8	12.6984
NUP210L	0	genome.wustl.edu	37	1	154091248	154091248	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	154091248	154091248	G	A	SNP	NUP210L	ENST00000368559	human	ensembl	74_37	-1	known	missense	c.1363	p.H455Y	0.970	NULL	pfam_Big_2,superfamily_Invasin/intimin_cell_adhesion,smart_Big_2	-	no_errors	NUP210L	HGNC	ENSG00000143552				271	0	0	162	15	8.47458
CHRNB2	0	genome.wustl.edu	37	1	154544124	154544124	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	154544124	154544124	G	A	SNP	CHRNB2	ENST00000368476	human	ensembl	74_37	+1	known	silent	c.825	p.A275	0.969	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNB2	HGNC	ENSG00000160716				128	0	0	105	27	20.4545
ADAR	0	genome.wustl.edu	37	1	154569657	154569657	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	154569657	154569657	T	C	SNP	ADAR	ENST00000292205	human	ensembl	74_37	-1	known	missense	c.2150	p.E717G	1.000	pfam_dsRNA-bd_dom,smart_dsRNA-bd_dom,pfscan_dsRNA-bd_dom	pfam_A_deamin,pfam_dsRNA_A_deaminase,pfam_dsRNA-bd_dom,smart_dsRNA_A_deaminase,smart_dsRNA-bd_dom,smart_A_deamin,pfscan_dsRNA-bd_dom,pfscan_dsRNA_A_deaminase,pfscan_A_deamin	-	no_errors	ADAR	HGNC	ENSG00000160710				82	0	0	74	9	10.8434
PMVK	0	genome.wustl.edu	37	1	154897634	154897634	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	154897634	154897634	G	A	SNP	PMVK	ENST00000368467	human	ensembl	74_37	-1	known	silent	c.550	p.L184	0.228	superfamily_P-loop_NTPase,pirsf_Pmev_kin_anim,tigrfam_Pmev_kin_anim	pfam_Pmev_kin_anim,superfamily_P-loop_NTPase,pirsf_Pmev_kin_anim,tigrfam_Pmev_kin_anim	-	no_errors	PMVK	HGNC	ENSG00000163344				170	0	0	169	13	7.14286
TRIM46	0	genome.wustl.edu	37	1	155147963	155147963	+	Silent	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	155147963	155147963	C	A	SNP	TRIM46	ENST00000334634	human	ensembl	74_37	+1	known	silent	c.165	p.A55	1.000	pfam_Znf_C3HC4_RING-type,smart_Znf_RING	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_Fibronectin_type3,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,pfscan_Znf_B-box	-	no_errors	TRIM46	HGNC	ENSG00000163462				96	0	0	97	10	9.34579
TRIM46	0	genome.wustl.edu	37	1	155154445	155154445	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	155154445	155154445	G	A	SNP	TRIM46	ENST00000334634	human	ensembl	74_37	+1	known	missense	c.1706	p.R569Q	1.000	superfamily_ConA-like_lec_gl_sf,pfscan_B30.2/SPRY	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_Fibronectin_type3,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,pfscan_Znf_B-box	-	no_errors	TRIM46	HGNC	ENSG00000163462				32	0	0	33	8	19.5122
THBS3	0	genome.wustl.edu	37	1	155169629	155169629	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	155169629	155169629	G	T	SNP	THBS3	ENST00000368378	human	ensembl	74_37	-1	known	missense	c.1846	p.L616M	1.000	pfam_Thrombospondin_3-like_rpt	pfam_Thrombospondin_C,pfam_Thbs/COMP_coiled-coil,pfam_Thrombospondin_3-like_rpt,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	THBS3	HGNC	ENSG00000169231				88	0	0	97	10	9.34579
FAM189B	0	genome.wustl.edu	37	1	155220430	155220430	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	155220430	155220430	G	A	SNP	FAM189B	ENST00000361361	human	ensembl	74_37	-1	known	missense	c.1147	p.R383W	0.994	NULL	pfam_CD20-like	-	no_errors	FAM189B	HGNC	ENSG00000160767				33	0	0	16	4	20
SCAMP3	0	genome.wustl.edu	37	1	155226553	155226553	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	155226553	155226553	T	A	SNP	SCAMP3	ENST00000302631	human	ensembl	74_37	-1	known	missense	c.809	p.K270M	0.048	pfam_SCAMP	pfam_SCAMP	-	no_errors	SCAMP3	HGNC	ENSG00000116521				41	0	0	33	5	13.1579
FDPS	0	genome.wustl.edu	37	1	155289429	155289429	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	155289429	155289429	G	A	SNP	FDPS	ENST00000356657	human	ensembl	74_37	+1	known	missense	c.874	p.A292T	0.011	pfam_Polyprenyl_synt,superfamily_Terpenoid_synth	pfam_Polyprenyl_synt,superfamily_Terpenoid_synth	-	no_errors	FDPS	HGNC	ENSG00000160752				69	0	0	42	10	19.2308
RUSC1-AS1	0	genome.wustl.edu	37	1	155290616	155290616	+	RNA	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	155290616	155290616	C	A	SNP	RUSC1-AS1	ENST00000450199	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	RUSC1-AS1	HGNC	ENSG00000225855				46	0	0	43	10	18.8679
ASH1L	0	genome.wustl.edu	37	1	155349857	155349857	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	155349857	155349857	G	T	SNP	ASH1L	ENST00000368346	human	ensembl	74_37	-1	known	missense	c.6169	p.L2057I	1.000	NULL	pfam_SET_dom,pfam_BAH_dom,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_AT_hook_DNA-bd_motif,smart_AWS,smart_SET_dom,smart_Bromodomain,smart_Znf_PHD,smart_BAH_dom,pfscan_AWS,pfscan_BAH_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Bromodomain	-	no_errors	ASH1L	HGNC	ENSG00000116539				124	1	0.8	72	6	7.69231
ASH1L	0	genome.wustl.edu	37	1	155449639	155449639	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	155449639	155449639	A	G	SNP	ASH1L	ENST00000368346	human	ensembl	74_37	-1	known	missense	c.3022	p.S1008P	1.000	NULL	pfam_SET_dom,pfam_BAH_dom,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_AT_hook_DNA-bd_motif,smart_AWS,smart_SET_dom,smart_Bromodomain,smart_Znf_PHD,smart_BAH_dom,pfscan_AWS,pfscan_BAH_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Bromodomain	-	no_errors	ASH1L	HGNC	ENSG00000116539				91	0	0	81	7	7.95455
ASH1L	0	genome.wustl.edu	37	1	155450153	155450153	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	155450153	155450153	C	T	SNP	ASH1L	ENST00000368346	human	ensembl	74_37	-1	known	missense	c.2508	p.M836I	1.000	smart_AT_hook_DNA-bd_motif	pfam_SET_dom,pfam_BAH_dom,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_AT_hook_DNA-bd_motif,smart_AWS,smart_SET_dom,smart_Bromodomain,smart_Znf_PHD,smart_BAH_dom,pfscan_AWS,pfscan_BAH_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Bromodomain	-	no_errors	ASH1L	HGNC	ENSG00000116539				139	0	0	124	9	6.76692
ASH1L	0	genome.wustl.edu	37	1	155450980	155450980	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	155450980	155450980	T	C	SNP	ASH1L	ENST00000368346	human	ensembl	74_37	-1	known	missense	c.1681	p.T561A	0.999	NULL	pfam_SET_dom,pfam_BAH_dom,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_AT_hook_DNA-bd_motif,smart_AWS,smart_SET_dom,smart_Bromodomain,smart_Znf_PHD,smart_BAH_dom,pfscan_AWS,pfscan_BAH_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Bromodomain	-	no_errors	ASH1L	HGNC	ENSG00000116539				105	0	0	91	6	6.18557
ASH1L	0	genome.wustl.edu	37	1	155451081	155451081	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	155451081	155451081	C	T	SNP	ASH1L	ENST00000368346	human	ensembl	74_37	-1	known	missense	c.1580	p.C527Y	1.000	NULL	pfam_SET_dom,pfam_BAH_dom,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_AT_hook_DNA-bd_motif,smart_AWS,smart_SET_dom,smart_Bromodomain,smart_Znf_PHD,smart_BAH_dom,pfscan_AWS,pfscan_BAH_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Bromodomain	-	no_errors	ASH1L	HGNC	ENSG00000116539				115	0	0	82	13	13.6842
GON4L	0	genome.wustl.edu	37	1	155721929	155721929	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	155721929	155721929	A	T	SNP	GON4L	ENST00000368331	human	ensembl	74_37	-1	known	missense	c.6295	p.S2099T	0.000	NULL	pfam_PAH,superfamily_PAH,superfamily_Homeodomain-like,pfscan_Myb-like_dom	-	no_errors	GON4L	HGNC	ENSG00000116580				104	0	0	105	12	10.2564
SYT11	0	genome.wustl.edu	37	1	155838037	155838037	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	155838037	155838037	C	T	SNP	SYT11	ENST00000368324	human	ensembl	74_37	+1	known	nonsense	c.316	p.R106*	0.952	NULL	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom,prints_Synaptotagmin	-	no_errors	SYT11	HGNC	ENSG00000132718				97	0	0	79	23	22.549
KIAA0907	0	genome.wustl.edu	37	1	155886463	155886463	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	155886463	155886463	T	C	SNP	KIAA0907	ENST00000368321	human	ensembl	74_37	-1	known	silent	c.1506	p.A502	1.000	NULL	NULL	-	no_errors	KIAA0907	HGNC	ENSG00000132680				287	2	0.692042	229	22	8.76494
KIAA0907	0	genome.wustl.edu	37	1	155891401	155891401	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	155891401	155891401	G	T	SNP	KIAA0907	ENST00000368321	human	ensembl	74_37	-1	known	missense	c.1031	p.A344D	1.000	NULL	NULL	-	no_errors	KIAA0907	HGNC	ENSG00000132680				99	0	0	65	8	10.9589
LMNA	0	genome.wustl.edu	37	1	156106815	156106815	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	156106815	156106815	T	C	SNP	LMNA	ENST00000368300	human	ensembl	74_37	+1	known	missense	c.1484	p.V495A	1.000	pfam_Lamin_tail_dom	pfam_IF,pfam_Lamin_tail_dom,superfamily_Prefoldin	-	no_errors	LMNA	HGNC	ENSG00000160789				50	0	0	45	3	6.25
MEF2D	0	genome.wustl.edu	37	1	156446831	156446831	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	156446831	156446831	C	A	SNP	MEF2D	ENST00000348159	human	ensembl	74_37	-1	known	missense	c.828	p.Q276H	1.000	NULL	pfam_TF_MADSbox,pfam_HJURP_C,superfamily_TF_MADSbox,smart_TF_MADSbox,pfscan_TF_MADSbox,prints_TF_MADSbox	-	no_errors	MEF2D	HGNC	ENSG00000116604				97	0	0	106	10	8.62069
MEF2D	0	genome.wustl.edu	37	1	156452228	156452228	+	Splice_Site	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	156452228	156452228	C	T	SNP	MEF2D	ENST00000348159	human	ensembl	74_37	-1	known	splice_site	c.258+1	e2+1	1.000	-	-	-	no_errors	MEF2D	HGNC	ENSG00000116604				56	0	0	45	7	13.4615
IQGAP3	0	genome.wustl.edu	37	1	156498800	156498800	+	Silent	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	156498800	156498800	G	T	SNP	IQGAP3	ENST00000361170	human	ensembl	74_37	-1	known	silent	c.4479	p.G1493	1.000	pfam_RasGAP_C	pfam_RasGAP,pfam_RasGAP_C,pfam_IQ_motif_EF-hand-BS,pfam_CH-domain,superfamily_Rho_GTPase_activation_prot,superfamily_CH-domain,superfamily_P-loop_NTPase,superfamily_WW_dom,smart_CH-domain,smart_IQ_motif_EF-hand-BS,smart_RasGAP,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS,pfscan_RasGAP	-	no_errors	IQGAP3	HGNC	ENSG00000183856				104	0	0	99	6	5.71429
IQGAP3	0	genome.wustl.edu	37	1	156500056	156500056	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	156500056	156500056	T	C	SNP	IQGAP3	ENST00000361170	human	ensembl	74_37	-1	known	silent	c.4245	p.T1415	0.996	NULL	pfam_RasGAP,pfam_RasGAP_C,pfam_IQ_motif_EF-hand-BS,pfam_CH-domain,superfamily_Rho_GTPase_activation_prot,superfamily_CH-domain,superfamily_P-loop_NTPase,superfamily_WW_dom,smart_CH-domain,smart_IQ_motif_EF-hand-BS,smart_RasGAP,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS,pfscan_RasGAP	-	no_errors	IQGAP3	HGNC	ENSG00000183856				55	0	0	38	3	7.31707
IQGAP3	0	genome.wustl.edu	37	1	156504461	156504461	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	156504461	156504461	T	C	SNP	IQGAP3	ENST00000361170	human	ensembl	74_37	-1	known	missense	c.3572	p.D1191G	1.000	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,smart_RasGAP,pfscan_RasGAP	pfam_RasGAP,pfam_RasGAP_C,pfam_IQ_motif_EF-hand-BS,pfam_CH-domain,superfamily_Rho_GTPase_activation_prot,superfamily_CH-domain,superfamily_P-loop_NTPase,superfamily_WW_dom,smart_CH-domain,smart_IQ_motif_EF-hand-BS,smart_RasGAP,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS,pfscan_RasGAP	-	no_errors	IQGAP3	HGNC	ENSG00000183856				25	0	0	25	2	7.40741
IQGAP3	0	genome.wustl.edu	37	1	156518533	156518533	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	156518533	156518533	A	G	SNP	IQGAP3	ENST00000361170	human	ensembl	74_37	-1	known	silent	c.1833	p.L611	0.998	NULL	pfam_RasGAP,pfam_RasGAP_C,pfam_IQ_motif_EF-hand-BS,pfam_CH-domain,superfamily_Rho_GTPase_activation_prot,superfamily_CH-domain,superfamily_P-loop_NTPase,superfamily_WW_dom,smart_CH-domain,smart_IQ_motif_EF-hand-BS,smart_RasGAP,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS,pfscan_RasGAP	-	no_errors	IQGAP3	HGNC	ENSG00000183856				35	0	0	37	4	9.7561
BCAN	0	genome.wustl.edu	37	1	156621427	156621427	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	156621427	156621427	G	T	SNP	BCAN	ENST00000329117	human	ensembl	74_37	+1	known	nonsense	c.1243	p.G415*	0.009	NULL	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_Sushi_SCR_CCP,pfam_EG-like_dom,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Link,smart_EG-like_dom,smart_C-type_lectin,smart_Sushi_SCR_CCP,prints_Link,prints_AntifreezeII,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like_dom	-	no_errors	BCAN	HGNC	ENSG00000132692				94	0	0	93	11	10.5769
ISG20L2	0	genome.wustl.edu	37	1	156697311	156697311	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	156697311	156697311	T	C	SNP	ISG20L2	ENST00000313146	human	ensembl	74_37	-1	known	missense	c.134	p.N45S	0.587	NULL	pfam_Exonuclease_RNaseT/DNA_pol3,superfamily_RNaseH-like_dom,smart_Exonuclease	-	no_errors	ISG20L2	HGNC	ENSG00000143319				169	0	0	151	19	11.1765
RRNAD1	0	genome.wustl.edu	37	1	156703256	156703256	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	156703256	156703256	C	T	SNP	RRNAD1	ENST00000368216	human	ensembl	74_37	+1	known	missense	c.580	p.R194C	0.979	NULL	NULL	-	no_errors	RRNAD1	HGNC	ENSG00000143303				102	0	0	116	8	6.45161
HDGF	0	genome.wustl.edu	37	1	156715093	156715093	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	156715093	156715093	C	T	SNP	HDGF	ENST00000368206	human	ensembl	74_37	-1	known	missense	c.208	p.E70K	1.000	pfam_PWWP_dom	pfam_PWWP_dom	-	no_errors	HDGF	HGNC	ENSG00000143321				29	0	0	28	2	6.66667
PRCC	0	genome.wustl.edu	37	1	156756637	156756637	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	156756637	156756637	G	A	SNP	PRCC	ENST00000271526	human	ensembl	74_37	+1	known	missense	c.754	p.A252T	1.000	NULL	pfam_PRCC	-	no_errors	PRCC	HGNC	ENSG00000143294				39	0	0	49	4	7.54717
INSRR	0	genome.wustl.edu	37	1	156814013	156814013	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	156814013	156814013	G	A	SNP	INSRR	ENST00000368195	human	ensembl	74_37	-1	known	silent	c.2797	p.L933	1.000	pirsf_Tyr_kinase_insulin-like_rcpt	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_dom,pfam_Furin-like_Cys-rich_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom	-	no_errors	INSRR	HGNC	ENSG00000027644				71	0	0	53	5	8.62069
ARHGEF11	0	genome.wustl.edu	37	1	156914939	156914939	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	156914939	156914939	C	T	SNP	ARHGEF11	ENST00000368194	human	ensembl	74_37	-1	known	missense	c.2863	p.E955K	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_RGS-like_dom,pfam_DH-domain,pfam_PDZ,pfam_RGS_dom,superfamily_DH-domain,superfamily_Regulat_G_prot_signal_superfam,superfamily_PDZ,smart_PDZ,smart_Regulat_G_prot_signal_superfam,smart_DH-domain,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Regulat_G_prot_signal_superfam,pfscan_DH-domain	-	no_errors	ARHGEF11	HGNC	ENSG00000132694				108	0	0	108	9	7.69231
ARHGEF11	0	genome.wustl.edu	37	1	156916542	156916542	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	156916542	156916542	G	A	SNP	ARHGEF11	ENST00000368194	human	ensembl	74_37	-1	known	missense	c.2606	p.A869V	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_RGS-like_dom,pfam_DH-domain,pfam_PDZ,pfam_RGS_dom,superfamily_DH-domain,superfamily_Regulat_G_prot_signal_superfam,superfamily_PDZ,smart_PDZ,smart_Regulat_G_prot_signal_superfam,smart_DH-domain,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Regulat_G_prot_signal_superfam,pfscan_DH-domain	-	no_errors	ARHGEF11	HGNC	ENSG00000132694				175	0	0	160	20	11.1111
ARHGEF11	0	genome.wustl.edu	37	1	156918229	156918229	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	156918229	156918229	G	A	SNP	ARHGEF11	ENST00000368194	human	ensembl	74_37	-1	known	missense	c.1987	p.R663W	1.000	NULL	pfam_RGS-like_dom,pfam_DH-domain,pfam_PDZ,pfam_RGS_dom,superfamily_DH-domain,superfamily_Regulat_G_prot_signal_superfam,superfamily_PDZ,smart_PDZ,smart_Regulat_G_prot_signal_superfam,smart_DH-domain,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Regulat_G_prot_signal_superfam,pfscan_DH-domain	-	no_errors	ARHGEF11	HGNC	ENSG00000132694				59	0	0	61	17	21.7949
ARHGEF11	0	genome.wustl.edu	37	1	156941587	156941587	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	156941587	156941587	G	A	SNP	ARHGEF11	ENST00000368194	human	ensembl	74_37	-1	known	missense	c.604	p.R202W	1.000	NULL	pfam_RGS-like_dom,pfam_DH-domain,pfam_PDZ,pfam_RGS_dom,superfamily_DH-domain,superfamily_Regulat_G_prot_signal_superfam,superfamily_PDZ,smart_PDZ,smart_Regulat_G_prot_signal_superfam,smart_DH-domain,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Regulat_G_prot_signal_superfam,pfscan_DH-domain	-	no_errors	ARHGEF11	HGNC	ENSG00000132694				63	0	0	68	14	17.0732
FCRL5	0	genome.wustl.edu	37	1	157488498	157488498	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	157488498	157488498	T	A	SNP	FCRL5	ENST00000356953	human	ensembl	74_37	-1	known	missense	c.2735	p.Y912F	0.996	NULL	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	FCRL5	HGNC	ENSG00000143297				82	0	0	74	8	9.7561
FCRL2	0	genome.wustl.edu	37	1	157739769	157739769	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	157739769	157739769	T	C	SNP	FCRL2	ENST00000361516	human	ensembl	74_37	-1	known	missense	c.482	p.E161G	0.175	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	FCRL2	HGNC	ENSG00000132704				74	0	0	51	8	13.5593
CD1D	0	genome.wustl.edu	37	1	158152735	158152735	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	158152735	158152735	T	C	SNP	CD1D	ENST00000368171	human	ensembl	74_37	+1	known	silent	c.675	p.H225	0.749	pfam_Ig_C1-set,smart_Ig_C1-set,pfscan_Ig-like_dom	pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	CD1D	HGNC	ENSG00000158473				100	0	0	102	7	6.42202
CASP9	0	genome.wustl.edu	37	1	15833485	15833485	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	15833485	15833485	C	T	SNP	CASP9	ENST00000333868	human	ensembl	74_37	-1	known	missense	c.539	p.R180H	0.975	pfam_Pept_C14_caspase,smart_Pept_C14A_p45_core,pirsf_Caspase_IL-1_beta,pfscan_Pept_C14_ICE_p20,prints_Pept_C14A_p45_core	pfam_Pept_C14_caspase,pfam_CARD,superfamily_DEATH-like_dom,smart_CARD,smart_Pept_C14A_p45_core,pirsf_Caspase_IL-1_beta,pfscan_CARD,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20,prints_Pept_C14A_p45_core	-	no_errors	CASP9	HGNC	ENSG00000132906				149	0	0	137	16	10.4575
OR10R2	0	genome.wustl.edu	37	1	158450322	158450322	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	158450322	158450322	A	T	SNP	OR10R2	ENST00000368152	human	ensembl	74_37	+1	known	missense	c.655	p.I219L	0.169	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10R2	HGNC	ENSG00000198965				193	0	0	163	11	6.32184
OR10Z1	0	genome.wustl.edu	37	1	158576558	158576558	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	158576558	158576558	T	C	SNP	OR10Z1	ENST00000361284	human	ensembl	74_37	+1	known	silent	c.330	p.T110	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10Z1	HGNC	ENSG00000198967				169	0	0	130	37	22.1557
OR10Z1	0	genome.wustl.edu	37	1	158576645	158576645	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	158576645	158576645	C	T	SNP	OR10Z1	ENST00000361284	human	ensembl	74_37	+1	known	silent	c.417	p.T139	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10Z1	HGNC	ENSG00000198967				86	0	0	89	8	8.24742
SPTA1	0	genome.wustl.edu	37	1	158583526	158583526	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	158583526	158583526	G	A	SNP	SPTA1	ENST00000368147	human	ensembl	74_37	-1	known	missense	c.6974	p.A2325V	0.835	pfscan_EF_hand_dom	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_hand_dom,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554				93	0	0	82	5	5.74713
SPTA1	0	genome.wustl.edu	37	1	158621206	158621206	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	158621206	158621206	T	A	SNP	SPTA1	ENST00000368147	human	ensembl	74_37	-1	known	missense	c.3428	p.D1143V	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_hand_dom,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554				314	0	0	259	24	8.48057
SPTA1	0	genome.wustl.edu	37	1	158622391	158622391	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	158622391	158622391	G	A	SNP	SPTA1	ENST00000368147	human	ensembl	74_37	-1	known	missense	c.3241	p.R1081C	0.998	NULL	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_hand_dom,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554				126	0	0	101	7	6.48148
OR6K3	0	genome.wustl.edu	37	1	158687118	158687118	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	158687118	158687118	T	C	SNP	OR6K3	ENST00000368146	human	ensembl	74_37	-1	known	missense	c.836	p.D279G	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6K3	HGNC	ENSG00000203757				83	0	0	66	7	9.58904
OR6K3	0	genome.wustl.edu	37	1	158687335	158687335	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	158687335	158687335	C	G	SNP	OR6K3	ENST00000368146	human	ensembl	74_37	-1	known	missense	c.619	p.D207H	0.007	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6K3	HGNC	ENSG00000203757				152	0	0	122	21	14.6853
OR6K3	0	genome.wustl.edu	37	1	158687490	158687490	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	158687490	158687490	C	A	SNP	OR6K3	ENST00000368146	human	ensembl	74_37	-1	known	missense	c.464	p.R155L	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6K3	HGNC	ENSG00000203757				111	0	0	103	13	11.2069
OR6K6	0	genome.wustl.edu	37	1	158724839	158724839	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	158724839	158724839	G	T	SNP	OR6K6	ENST00000368144	human	ensembl	74_37	+1	known	missense	c.234	p.Q78H	0.147	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6K6	HGNC	ENSG00000180433				185	0	0	142	39	21.547
IFI16	0	genome.wustl.edu	37	1	158986335	158986335	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	158986335	158986335	T	C	SNP	IFI16	ENST00000295809	human	ensembl	74_37	+1	known	missense	c.394	p.S132P	0.000	NULL	pfam_HIN200/IF120x,pfam_DAPIN,superfamily_DEATH-like_dom,pfscan_DAPIN,pfscan_HIN200/IF120x	-	no_errors	IFI16	HGNC	ENSG00000163565				35	0	0	31	3	8.82353
CRP	0	genome.wustl.edu	37	1	159683503	159683503	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	159683503	159683503	T	A	SNP	CRP	ENST00000255030	human	ensembl	74_37	-1	known	missense	c.487	p.N163Y	0.000	pfam_Pentaxin,superfamily_ConA-like_lec_gl_sf,smart_Pentaxin,prints_Pentaxin	pfam_Pentaxin,superfamily_ConA-like_lec_gl_sf,smart_Pentaxin,prints_Pentaxin	-	no_errors	CRP	HGNC	ENSG00000132693				260	0	0	276	28	9.21053
FCRL6	0	genome.wustl.edu	37	1	159778831	159778831	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	159778831	159778831	A	G	SNP	FCRL6	ENST00000368106	human	ensembl	74_37	+1	known	missense	c.400	p.T134A	0.000	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	FCRL6	HGNC	ENSG00000181036				64	0	0	51	6	10.5263
RSC1A1	0	genome.wustl.edu	37	1	15987346	15987346	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	15987346	15987346	A	G	SNP	RSC1A1	ENST00000345034	human	ensembl	74_37	+1	known	missense	c.983	p.H328R	0.000	NULL	superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	RSC1A1	HGNC	ENSG00000215695				89	0	0	64	4	5.88235
IGSF9	0	genome.wustl.edu	37	1	159901373	159901373	+	Silent	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	159901373	159901373	G	T	SNP	IGSF9	ENST00000368094	human	ensembl	74_37	-1	known	silent	c.1383	p.G461	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	IGSF9	HGNC	ENSG00000085552				33	0	0	31	6	16.2162
SLAMF9	0	genome.wustl.edu	37	1	159923322	159923322	+	Silent	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	159923322	159923322	G	T	SNP	SLAMF9	ENST00000368093	human	ensembl	74_37	-1	known	silent	c.168	p.S56	0.017	pfam_Ig_V-set	pfam_Ig_V-set,pfscan_Ig-like_dom	-	no_errors	SLAMF9	HGNC	ENSG00000162723				79	0	0	79	5	5.95238
PIGM	0	genome.wustl.edu	37	1	160001086	160001086	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	160001086	160001086	A	G	SNP	PIGM	ENST00000368090	human	ensembl	74_37	-1	known	silent	c.444	p.S148	0.235	pfam_Mannosyltransferase_DXD	pfam_Mannosyltransferase_DXD	-	no_errors	PIGM	HGNC	ENSG00000143315				111	0	0	102	7	6.42202
KCNJ10	0	genome.wustl.edu	37	1	160012208	160012208	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	160012208	160012208	C	T	SNP	KCNJ10	ENST00000368089	human	ensembl	74_37	-1	known	missense	c.115	p.V39M	0.990	pfam_K_chnl_inward-rec_Kir,pirsf_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir1.2,prints_K_chnl_inward-rec_Kir1.1	-	no_errors	KCNJ10	HGNC	ENSG00000177807				147	0	0	120	7	5.51181
ATP1A2	0	genome.wustl.edu	37	1	160099949	160099949	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	160099949	160099949	G	A	SNP	ATP1A2	ENST00000361216	human	ensembl	74_37	+1	known	missense	c.1519	p.A507T	1.000	pfam_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Na/K_IIC	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP1A2	HGNC	ENSG00000018625				99	0	0	103	7	6.36364
CASQ1	0	genome.wustl.edu	37	1	160164845	160164845	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	160164845	160164845	T	C	SNP	CASQ1	ENST00000368078	human	ensembl	74_37	+1	known	missense	c.509	p.L170P	1.000	pfam_Calsequestrin,superfamily_Thioredoxin-like_fold,prints_Calsequestrin	pfam_Calsequestrin,superfamily_Thioredoxin-like_fold,prints_Calsequestrin	-	no_errors	CASQ1	HGNC	ENSG00000143318				86	0	0	81	5	5.81395
COPA	0	genome.wustl.edu	37	1	160261161	160261161	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	160261161	160261161	T	C	SNP	COPA	ENST00000368069	human	ensembl	74_37	-1	known	silent	c.3411	p.L1137	0.836	pfam_Coatomer_asu_C,pirsf_Coatomer_asu	pfam_Coatomer_asu_C,pfam_Coatomer_WD-assoc_reg,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_Coatomer_asu,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	COPA	HGNC	ENSG00000122218				104	0	0	98	9	8.41121
COPA	0	genome.wustl.edu	37	1	160264607	160264607	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	160264607	160264607	A	G	SNP	COPA	ENST00000368069	human	ensembl	74_37	-1	known	silent	c.2544	p.T848	0.920	pfam_Coatomer_asu_C,pirsf_Coatomer_asu	pfam_Coatomer_asu_C,pfam_Coatomer_WD-assoc_reg,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_Coatomer_asu,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	COPA	HGNC	ENSG00000122218				101	0	0	107	6	5.30973
COPA	0	genome.wustl.edu	37	1	160268779	160268779	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	160268779	160268779	T	C	SNP	COPA	ENST00000368069	human	ensembl	74_37	-1	known	silent	c.1860	p.V620	0.876	pfam_Coatomer_WD-assoc_reg,pirsf_Coatomer_asu	pfam_Coatomer_asu_C,pfam_Coatomer_WD-assoc_reg,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_Coatomer_asu,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	COPA	HGNC	ENSG00000122218				99	0	0	114	13	10.2362
PLEKHM2	0	genome.wustl.edu	37	1	16056303	16056303	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	16056303	16056303	C	T	SNP	PLEKHM2	ENST00000375799	human	ensembl	74_37	+1	known	missense	c.2087	p.A696V	0.995	NULL	pfam_Run,pfam_Pleckstrin_homology,smart_Run,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Run	-	no_errors	PLEKHM2	HGNC	ENSG00000116786				73	0	0	68	5	6.84932
SLAMF1	0	genome.wustl.edu	37	1	160580589	160580589	+	Splice_Site	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	160580589	160580589	C	A	SNP	SLAMF1	ENST00000302035	human	ensembl	74_37	-1	known	splice_site	c.958-1	e7-1	0.879	-	-	-	no_errors	SLAMF1	HGNC	ENSG00000117090				110	0	0	94	5	5.05051
SLAMF1	0	genome.wustl.edu	37	1	160607140	160607140	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	160607140	160607140	C	T	SNP	SLAMF1	ENST00000302035	human	ensembl	74_37	-1	known	missense	c.256	p.A86T	0.000	pfam_Sig_lymph_act_molc_N	pfam_Sig_lymph_act_molc_N,pfscan_Ig-like_dom	-	no_errors	SLAMF1	HGNC	ENSG00000117090				110	0	0	92	11	10.6796
CD48	0	genome.wustl.edu	37	1	160654897	160654897	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	160654897	160654897	T	C	SNP	CD48	ENST00000368046	human	ensembl	74_37	-1	known	silent	c.165	p.Q55	0.000	pfam_Ig_V-set,smart_Ig_sub	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	CD48	HGNC	ENSG00000117091				81	0	0	49	6	10.9091
SLAMF7	0	genome.wustl.edu	37	1	160718142	160718142	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	160718142	160718142	G	T	SNP	SLAMF7	ENST00000368043	human	ensembl	74_37	+1	known	missense	c.214	p.V72L	0.001	pfam_Ig_V-set	pfam_Ig_V-set,pfscan_Ig-like_dom	-	no_errors	SLAMF7	HGNC	ENSG00000026751				51	0	0	51	5	8.92857
SLC35E2B	0	genome.wustl.edu	37	1	1607566	1607566	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	1607566	1607566	T	C	SNP	SLC35E2B	ENST00000234800	human	ensembl	74_37	-1	known	missense	c.395	p.H132R	1.000	pfam_DMT,pfam_UAA	pfam_Tpt_PEP_trans_dom,pfam_DMT,pfam_UAA	-	no_errors	SLC35E2B	HGNC	ENSG00000189339				32	0	0	24	5	17.2414
ITLN1	0	genome.wustl.edu	37	1	160850383	160850383	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	160850383	160850383	C	T	SNP	ITLN1	ENST00000326245	human	ensembl	74_37	-1	known	missense	c.680	p.G227D	0.695	superfamily_Fibrinogen_a/b/g_C_dom	superfamily_Fibrinogen_a/b/g_C_dom	-	no_errors	ITLN1	HGNC	ENSG00000179914				264	0	0	229	20	8.03213
FBLIM1	0	genome.wustl.edu	37	1	16095085	16095085	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	16095085	16095085	A	G	SNP	FBLIM1	ENST00000441801	human	ensembl	74_37	+1	known	silent	c.501	p.P167	0.988	NULL	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	FBLIM1	HGNC	ENSG00000162458				46	0	0	44	5	10.2041
USF1	0	genome.wustl.edu	37	1	161009746	161009746	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	161009746	161009746	G	A	SNP	USF1	ENST00000368020	human	ensembl	74_37	-1	known	silent	c.897	p.H299	0.937	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	USF1	HGNC	ENSG00000158773				88	0	0	66	12	15.3846
PPOX	0	genome.wustl.edu	37	1	161137170	161137170	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	161137170	161137170	C	T	SNP	PPOX	ENST00000352210	human	ensembl	74_37	+1	known	missense	c.232	p.L78F	1.000	pfam_Amino_oxidase,tigrfam_Protoporphyrinogen_oxidase	pfam_Amino_oxidase,tigrfam_Protoporphyrinogen_oxidase	-	no_errors	PPOX	HGNC	ENSG00000143224				57	0	0	64	4	5.88235
NR1I3	0	genome.wustl.edu	37	1	161201053	161201053	+	RNA	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	161201053	161201053	T	C	SNP	NR1I3	ENST00000479324	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	NR1I3	HGNC	ENSG00000143257				66	0	0	62	13	17.3333
NR1I3	0	genome.wustl.edu	37	1	161201198	161201198	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	161201198	161201198	T	C	SNP	NR1I3	ENST00000502985	human	ensembl	74_37	-1	putative	missense	c.305	p.Y102C	0.003	NULL	pfam_Znf_hrmn_rcpt,smart_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	NR1I3	HGNC	ENSG00000143257				109	0	0	81	10	10.989
NR1I3	0	genome.wustl.edu	37	1	161203072	161203072	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	161203072	161203072	C	T	SNP	NR1I3	ENST00000367979	human	ensembl	74_37	-1	known	missense	c.295	p.A99T	0.998	NULL	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	NR1I3	HGNC	ENSG00000143257				112	0	0	107	12	10.084
SDHC	0	genome.wustl.edu	37	1	161284191	161284191	+	RNA	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	161284191	161284191	C	A	SNP	SDHC	ENST00000515731	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.820	-	-	-	no_errors	SDHC	HGNC	ENSG00000143252				26	0	0	27	7	20.5882
HSPA6	0	genome.wustl.edu	37	1	161495350	161495350	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	161495350	161495350	G	A	SNP	HSPA6	ENST00000309758	human	ensembl	74_37	+1	known	missense	c.902	p.R301H	0.999	pfam_Hsp_70_fam,pfam_MreB_Mrl	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPA6	HGNC	ENSG00000173110				23	0	0	25	5	16.6667
HSPA6	0	genome.wustl.edu	37	1	161495882	161495882	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	161495882	161495882	G	A	SNP	HSPA6	ENST00000309758	human	ensembl	74_37	+1	known	silent	c.1434	p.V478	0.998	pfam_Hsp_70_fam,prints_Hsp_70_fam	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPA6	HGNC	ENSG00000173110				40	0	0	56	5	8.19672
FCGR3B	0	genome.wustl.edu	37	1	161599765	161599765	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	161599765	161599765	T	C	SNP	FCGR3B	ENST00000294800	human	ensembl	74_37	-1	known	missense	c.122	p.D41G	0.086	smart_Ig_sub,pfscan_Ig-like_dom	smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	FCGR3B	HGNC	ENSG00000162747				40	0	0	60	8	11.7647
FCRLB	0	genome.wustl.edu	37	1	161697222	161697222	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	161697222	161697222	C	T	SNP	FCRLB	ENST00000367948	human	ensembl	74_37	+1	known	missense	c.1051	p.P351S	0.093	NULL	smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	FCRLB	HGNC	ENSG00000162746				39	0	0	49	5	9.25926
ATF6	0	genome.wustl.edu	37	1	161789480	161789480	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	161789480	161789480	T	A	SNP	ATF6	ENST00000367942	human	ensembl	74_37	+1	known	missense	c.967	p.S323T	1.000	pfam_bZIP,smart_bZIP,pfscan_bZIP	pfam_bZIP,smart_bZIP,pfscan_bZIP	-	no_errors	ATF6	HGNC	ENSG00000118217				93	0	0	71	6	7.79221
OLFML2B	0	genome.wustl.edu	37	1	161954054	161954054	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	161954054	161954054	T	A	SNP	OLFML2B	ENST00000294794	human	ensembl	74_37	-1	known	missense	c.1664	p.N555I	1.000	pfam_Olfac-like,smart_Olfac-like,pfscan_Olfac-like	pfam_Olfac-like,superfamily_NA-bd_OB-fold,smart_Olfac-like,pfscan_Olfac-like	-	no_errors	OLFML2B	HGNC	ENSG00000162745				67	0	0	49	6	10.9091
NOS1AP	0	genome.wustl.edu	37	1	162313640	162313640	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	162313640	162313640	A	G	SNP	NOS1AP	ENST00000361897	human	ensembl	74_37	+1	known	missense	c.469	p.I157V	0.990	pfam_PTB/PI_dom,smart_PTB/PI_dom,pfscan_PTB/PI_dom	pfam_PTB/PI_dom,smart_PTB/PI_dom,pfscan_PTB/PI_dom	-	no_errors	NOS1AP	HGNC	ENSG00000198929				90	0	0	81	10	10.989
UHMK1	0	genome.wustl.edu	37	1	162469877	162469877	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	162469877	162469877	T	C	SNP	UHMK1	ENST00000489294	human	ensembl	74_37	+1	known	missense	c.401	p.M134T	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_RRM_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_RRM_dom,pfscan_RRM_dom,pfscan_Prot_kinase_dom	-	no_errors	UHMK1	HGNC	ENSG00000152332				99	0	0	100	9	8.25688
ZBTB17	0	genome.wustl.edu	37	1	16274869	16274869	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	16274869	16274869	A	T	SNP	ZBTB17	ENST00000375733	human	ensembl	74_37	-1	known	missense	c.122	p.V41E	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB17	HGNC	ENSG00000116809				75	0	0	55	4	6.77966
HSD17B7	0	genome.wustl.edu	37	1	162766377	162766377	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	162766377	162766377	T	G	SNP	HSD17B7	ENST00000254521	human	ensembl	74_37	+1	known	missense	c.242	p.F81C	1.000	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH	-	no_errors	HSD17B7	HGNC	ENSG00000132196				112	0	0	72	7	8.86076
RGS5	0	genome.wustl.edu	37	1	163117247	163117247	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	163117247	163117247	A	C	SNP	RGS5	ENST00000313961	human	ensembl	74_37	-1	known	missense	c.431	p.V144G	1.000	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS5	HGNC	ENSG00000143248				120	0	0	97	11	10.1852
CLCNKB	0	genome.wustl.edu	37	1	16382999	16382999	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	16382999	16382999	T	C	SNP	CLCNKB	ENST00000375679	human	ensembl	74_37	+1	known	missense	c.2012	p.V671A	0.957	pfam_CBS_dom,smart_CBS_dom	pfam_Cl-channel_volt-gated,pfam_CBS_dom,superfamily_Cl-channel_core,smart_CBS_dom,prints_Cl-channel_volt-gated,prints_Cl_channel-K	-	no_errors	CLCNKB	HGNC	ENSG00000184908				151	0	0	173	10	5.46448
ARHGEF19	0	genome.wustl.edu	37	1	16529008	16529008	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	16529008	16529008	T	G	SNP	ARHGEF19	ENST00000270747	human	ensembl	74_37	-1	known	missense	c.1969	p.S657R	1.000	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,pfam_SH3_domain,pfam_SH3_2,superfamily_DH-domain,superfamily_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ARHGEF19	HGNC	ENSG00000142632				62	0	0	66	7	9.58904
POGK	0	genome.wustl.edu	37	1	166818552	166818552	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	166818552	166818552	G	A	SNP	POGK	ENST00000367875	human	ensembl	74_37	+1	known	missense	c.736	p.A246T	0.999	pfam_Brinker_DNA-bd	pfam_DDE_SF_endonuclease_CENPB-like,pfam_Brinker_DNA-bd,pfam_HTH_CenpB_DNA-bd_dom,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,superfamily_Homeodomain-like,smart_Krueppel-associated_box,smart_HTH_CenpB_DNA-bd_dom,pfscan_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	POGK	HGNC	ENSG00000143157				65	0	0	49	8	14.0351
POGK	0	genome.wustl.edu	37	1	166818591	166818591	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	166818591	166818591	T	C	SNP	POGK	ENST00000367875	human	ensembl	74_37	+1	known	missense	c.775	p.F259L	0.976	superfamily_Homeodomain-like,smart_HTH_CenpB_DNA-bd_dom	pfam_DDE_SF_endonuclease_CENPB-like,pfam_Brinker_DNA-bd,pfam_HTH_CenpB_DNA-bd_dom,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,superfamily_Homeodomain-like,smart_Krueppel-associated_box,smart_HTH_CenpB_DNA-bd_dom,pfscan_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	POGK	HGNC	ENSG00000143157				61	0	0	47	3	6
MAEL	0	genome.wustl.edu	37	1	166962057	166962057	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	166962057	166962057	T	C	SNP	MAEL	ENST00000367872	human	ensembl	74_37	+1	known	missense	c.460	p.F154L	1.000	NULL	pfam_HMG_box_dom,superfamily_HMG_box_dom,superfamily_CH-domain	-	no_errors	MAEL	HGNC	ENSG00000143194				137	0	0	94	6	6
SZRD1	0	genome.wustl.edu	37	1	16721643	16721643	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	16721643	16721643	C	T	SNP	SZRD1	ENST00000375590	human	ensembl	74_37	+1	known	silent	c.357	p.G119	0.660	NULL	NULL	-	no_errors	SZRD1	HGNC	ENSG00000055070				34	0	0	43	6	12.2449
ADCY10	0	genome.wustl.edu	37	1	167844425	167844425	+	Splice_Site	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	167844425	167844425	C	A	SNP	ADCY10	ENST00000367851	human	ensembl	74_37	-1	known	splice_site	c.1407-1	e12-1	1.000	-	-	-	no_errors	ADCY10	HGNC	ENSG00000143199				75	0	0	58	6	9.375
TBX19	0	genome.wustl.edu	37	1	168250426	168250426	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	168250426	168250426	A	C	SNP	TBX19	ENST00000367821	human	ensembl	74_37	+1	known	missense	c.98	p.K33T	1.000	prints_TF_Brachyury	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box,prints_TF_Brachyury	-	no_errors	TBX19	HGNC	ENSG00000143178				108	1	0.917431	77	6	7.22892
CCDC181	0	genome.wustl.edu	37	1	169366587	169366587	+	Nonsense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	169366587	169366587	T	A	SNP	CCDC181	ENST00000367806	human	ensembl	74_37	-1	known	nonsense	c.1258	p.K420*	1.000	NULL	NULL	-	no_errors	CCDC181	HGNC	ENSG00000117477				73	0	0	48	9	15.7895
SLC19A2	0	genome.wustl.edu	37	1	169435124	169435124	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	169435124	169435124	T	C	SNP	SLC19A2	ENST00000236137	human	ensembl	74_37	-1	known	missense	c.1457	p.E486G	0.911	superfamily_MFS_dom_general_subst_transpt,pirsf_Folate_carrier	pfam_Folate_carrier,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pirsf_Folate_carrier	-	no_errors	SLC19A2	HGNC	ENSG00000117479				114	0	0	62	6	8.82353
F5	0	genome.wustl.edu	37	1	169510886	169510886	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	169510886	169510886	A	T	SNP	F5	ENST00000367797	human	ensembl	74_37	-1	known	missense	c.3442	p.S1148T	0.027	NULL	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	F5	HGNC	ENSG00000198734				309	0	0	260	19	6.81004
F5	0	genome.wustl.edu	37	1	169519212	169519212	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	169519212	169519212	T	G	SNP	F5	ENST00000367797	human	ensembl	74_37	-1	known	missense	c.1438	p.T480P	1.000	superfamily_Cupredoxin	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	F5	HGNC	ENSG00000198734				141	0	0	109	11	9.16667
SELE	0	genome.wustl.edu	37	1	169702011	169702011	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	169702011	169702011	T	C	SNP	SELE	ENST00000333360	human	ensembl	74_37	-1	known	missense	c.166	p.I56V	1.000	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_Sushi_SCR_CCP,pfam_C-type_lectin,pfam_EG-like_dom,pfam_EGF_extracell,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_C-type_lectin,smart_EG-like_dom,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Sushi_SCR_CCP,prints_Selectin_superfamily	-	no_errors	SELE	HGNC	ENSG00000007908				123	0	0	111	13	10.4839
KIFAP3	0	genome.wustl.edu	37	1	170003615	170003615	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	170003615	170003615	T	C	SNP	KIFAP3	ENST00000361580	human	ensembl	74_37	-1	known	missense	c.640	p.I214V	0.996	NULL	superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	KIFAP3	HGNC	ENSG00000075945				69	0	0	41	4	8.88889
ESPNP	0	genome.wustl.edu	37	1	17023331	17023331	+	RNA	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	17023331	17023331	C	T	SNP	ESPNP	ENST00000492551	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.937	-	-	-	no_errors	ESPNP	HGNC	ENSG00000268869				70	0	0	69	4	5.47945
FMO1	0	genome.wustl.edu	37	1	171244546	171244546	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	171244546	171244546	T	C	SNP	FMO1	ENST00000354841	human	ensembl	74_37	+1	known	missense	c.383	p.V128A	0.991	pfam_Flavin_mOase-like,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pirsf_DiMe-aniline_mOase,prints_Flavin_mOase	pfam_Flavin_mOase-like,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pirsf_DiMe-aniline_mOase,prints_Flavin_mOase,prints_Flavin_mOase_1,prints_Flavin_mOase_2	-	no_errors	FMO1	HGNC	ENSG00000010932				109	0	0	83	8	8.79121
VAMP4	0	genome.wustl.edu	37	1	171707551	171707551	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	171707551	171707551	G	A	SNP	VAMP4	ENST00000236192	human	ensembl	74_37	-1	known	missense	c.4	p.P2S	1.000	NULL	pfam_Synaptobrevin,pfscan_Synaptobrevin,prints_Synaptobrevin	-	no_errors	VAMP4	HGNC	ENSG00000117533				89	0	0	59	7	10.6061
METTL13	0	genome.wustl.edu	37	1	171753044	171753044	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	171753044	171753044	G	A	SNP	METTL13	ENST00000361735	human	ensembl	74_37	+1	known	silent	c.318	p.T106	0.000	pfam_Methyltransf_11	pfam_Methyltransf_11,pfam_Spermidine/spermine_synthase	-	no_errors	METTL13	HGNC	ENSG00000010165				72	0	0	62	4	6.06061
METTL13	0	genome.wustl.edu	37	1	171753267	171753267	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	171753267	171753267	G	A	SNP	METTL13	ENST00000361735	human	ensembl	74_37	+1	known	missense	c.541	p.V181M	1.000	NULL	pfam_Methyltransf_11,pfam_Spermidine/spermine_synthase	-	no_errors	METTL13	HGNC	ENSG00000010165				59	0	0	56	5	8.19672
METTL13	0	genome.wustl.edu	37	1	171761377	171761377	+	Splice_Site	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	171761377	171761377	T	C	SNP	METTL13	ENST00000361735	human	ensembl	74_37	+1	known	splice_site	c.1693+2	e6+2	1.000	-	-	-	no_errors	METTL13	HGNC	ENSG00000010165				62	0	0	63	8	11.2676
DNM3	0	genome.wustl.edu	37	1	172357785	172357785	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	172357785	172357785	C	T	SNP	DNM3	ENST00000358155	human	ensembl	74_37	+1	known	silent	c.2358	p.G786	0.992	NULL	pfam_Dynamin_central,pfam_Dynamin_GTPase,pfam_GED,pfam_Pleckstrin_homology,superfamily_P-loop_NTPase,smart_Dynamin_GTPase,smart_Pleckstrin_homology,smart_GED,pfscan_Pleckstrin_homology,prints_Dynamin_SF	-	no_errors	DNM3	HGNC	ENSG00000197959				33	0	0	31	4	11.4286
PIGC	0	genome.wustl.edu	37	1	172411759	172411759	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	172411759	172411759	A	G	SNP	PIGC	ENST00000258324	human	ensembl	74_37	-1	known	missense	c.4	p.Y2H	0.327	pirsf_Plno_GlcNAc_GPI2	pfam_Plno_GlcNAc_GPI2,pirsf_Plno_GlcNAc_GPI2	-	no_errors	PIGC	HGNC	ENSG00000135845				183	0	0	165	11	6.25
FASLG	0	genome.wustl.edu	37	1	172635150	172635150	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	172635150	172635150	G	A	SNP	FASLG	ENST00000367721	human	ensembl	74_37	+1	known	silent	c.840	p.K280	0.993	pfam_TNF_dom,superfamily_Tumour_necrosis_fac-like_dom,smart_TNF_dom,pfscan_TNF_dom,prints_TNF	pfam_TNF_dom,superfamily_Tumour_necrosis_fac-like_dom,smart_TNF_dom,pfscan_TNF_dom,prints_FASL,prints_TNF,prints_TNF_C	-	no_errors	FASLG	HGNC	ENSG00000117560				94	0	0	91	5	5.20833
ATP13A2	0	genome.wustl.edu	37	1	17313105	17313105	+	Silent	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	17313105	17313105	C	A	SNP	ATP13A2	ENST00000326735	human	ensembl	74_37	-1	known	silent	c.3258	p.A1086	0.000	tigrfam_ATPase_P-typ_Cation_typ_V	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_Cation_typ_V,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Cation_typ_V,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP13A2	HGNC	ENSG00000159363				27	0	0	18	7	28
ATP13A2	0	genome.wustl.edu	37	1	17316648	17316648	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	17316648	17316648	A	G	SNP	ATP13A2	ENST00000326735	human	ensembl	74_37	-1	known	missense	c.2386	p.S796P	0.001	superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Cation_typ_V	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_Cation_typ_V,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Cation_typ_V,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP13A2	HGNC	ENSG00000159363				50	0	0	67	6	8.21918
PRDX6	0	genome.wustl.edu	37	1	173456932	173456932	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	173456932	173456932	T	A	SNP	PRDX6	ENST00000340385	human	ensembl	74_37	+1	known	missense	c.605	p.F202Y	1.000	pfam_Peroxiredoxin_C,superfamily_Thioredoxin-like_fold	pfam_AhpC/TSA,pfam_Peroxiredoxin_C,pfam_Redoxin,superfamily_Thioredoxin-like_fold	-	no_errors	PRDX6	HGNC	ENSG00000117592				68	0	0	82	8	8.88889
SLC9C2	0	genome.wustl.edu	37	1	173516834	173516834	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	173516834	173516834	T	C	SNP	SLC9C2	ENST00000367714	human	ensembl	74_37	-1	known	missense	c.1551	p.I517M	1.000	NULL	pfam_Cation/H_exchanger,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,pfscan_cNMP-bd_dom	-	no_errors	SLC9C2	HGNC	ENSG00000162753				98	0	0	59	17	22.3684
SDHB	0	genome.wustl.edu	37	1	17354302	17354302	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	17354302	17354302	T	C	SNP	SDHB	ENST00000375499	human	ensembl	74_37	-1	known	missense	c.482	p.D161G	1.000	superfamily_Helical_ferredxn,tigrfam_Succ_DH/fum_Rdtase_Fe-S	superfamily_Helical_ferredxn,superfamily_2Fe-2S_ferredoxin-type,pfscan_2Fe-2S_ferredoxin-type,tigrfam_Succ_DH/fum_Rdtase_Fe-S	-	no_errors	SDHB	HGNC	ENSG00000117118				115	0	0	64	7	9.85915
CENPL	0	genome.wustl.edu	37	1	173780280	173780280	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	173780280	173780280	G	A	SNP	CENPL	ENST00000356198	human	ensembl	74_37	-1	known	missense	c.158	p.S53L	0.420	NULL	NULL	-	no_errors	CENPL	HGNC	ENSG00000120334				132	0	0	95	7	6.86275
PADI2	0	genome.wustl.edu	37	1	17410313	17410313	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	17410313	17410313	A	T	SNP	PADI2	ENST00000375486	human	ensembl	74_37	-1	known	missense	c.958	p.F320I	1.000	pfam_PAD_C,pirsf_Protein-arginine_deiminase_sub	pfam_PAD_C,pfam_Prot_Arg_deaminase_cen_dom,pfam_PAD_N,superfamily_Prot_Arg_deaminase_cen_dom,superfamily_Cupredoxin,pirsf_Protein-arginine_deiminase_sub	-	no_errors	PADI2	HGNC	ENSG00000117115				130	0	0	134	10	6.94444
RABGAP1L	0	genome.wustl.edu	37	1	174221683	174221683	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	174221683	174221683	T	C	SNP	RABGAP1L	ENST00000251507	human	ensembl	74_37	+1	known	missense	c.941	p.V314A	1.000	pfam_Kinesin-like	pfam_Rab-GTPase-TBC_dom,pfam_Kinesin-like,pfam_PTB/PI_dom,superfamily_Rab-GTPase-TBC_dom,smart_PTB/PI_dom,smart_Rab-GTPase-TBC_dom,pfscan_PTB/PI_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	RABGAP1L	HGNC	ENSG00000152061				180	0	0	111	15	11.9048
GPR52	0	genome.wustl.edu	37	1	174417491	174417491	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	174417491	174417491	A	T	SNP	GPR52	ENST00000367685	human	ensembl	74_37	+1	known	missense	c.242	p.Q81L	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR52	HGNC	ENSG00000203737				233	0	0	147	15	9.25926
RABGAP1L	0	genome.wustl.edu	37	1	174671273	174671273	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	174671273	174671273	G	A	SNP	RABGAP1L	ENST00000251507	human	ensembl	74_37	+1	known	missense	c.2048	p.S683N	0.054	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,pfam_Kinesin-like,pfam_PTB/PI_dom,superfamily_Rab-GTPase-TBC_dom,smart_PTB/PI_dom,smart_Rab-GTPase-TBC_dom,pfscan_PTB/PI_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	RABGAP1L	HGNC	ENSG00000152061				127	0	0	98	11	10.0917
RABGAP1L	0	genome.wustl.edu	37	1	174671283	174671283	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	174671283	174671283	T	C	SNP	RABGAP1L	ENST00000251507	human	ensembl	74_37	+1	known	silent	c.2058	p.S686	0.936	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,pfam_Kinesin-like,pfam_PTB/PI_dom,superfamily_Rab-GTPase-TBC_dom,smart_PTB/PI_dom,smart_Rab-GTPase-TBC_dom,pfscan_PTB/PI_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	RABGAP1L	HGNC	ENSG00000152061				120	0	0	108	9	7.69231
TNR	0	genome.wustl.edu	37	1	175335099	175335099	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	175335099	175335099	A	T	SNP	TNR	ENST00000263525	human	ensembl	74_37	-1	known	missense	c.2229	p.D743E	0.429	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_Fibronectin_type3	-	no_errors	TNR	HGNC	ENSG00000116147				110	0	0	107	9	7.75862
TNR	0	genome.wustl.edu	37	1	175372423	175372423	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	175372423	175372423	C	T	SNP	TNR	ENST00000263525	human	ensembl	74_37	-1	known	missense	c.829	p.A277T	0.223	pfam_EGF_extracell,smart_EG-like_dom	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_Fibronectin_type3	-	no_errors	TNR	HGNC	ENSG00000116147				30	0	0	39	5	11.3636
TNR	0	genome.wustl.edu	37	1	175372644	175372644	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	175372644	175372644	T	C	SNP	TNR	ENST00000263525	human	ensembl	74_37	-1	known	missense	c.608	p.Y203C	0.988	smart_EG-like_dom	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_Fibronectin_type3	-	no_errors	TNR	HGNC	ENSG00000116147				125	0	0	129	9	6.52174
PADI3	0	genome.wustl.edu	37	1	17596816	17596816	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	17596816	17596816	G	A	SNP	PADI3	ENST00000375460	human	ensembl	74_37	+1	known	silent	c.741	p.E247	0.984	pfam_Prot_Arg_deaminase_cen_dom,superfamily_Prot_Arg_deaminase_cen_dom,pirsf_Protein-arginine_deiminase_sub	pfam_PAD_C,pfam_Prot_Arg_deaminase_cen_dom,pfam_PAD_N,superfamily_Prot_Arg_deaminase_cen_dom,superfamily_Cupredoxin,pirsf_Protein-arginine_deiminase_sub	-	no_errors	PADI3	HGNC	ENSG00000142619				72	0	0	79	8	9.1954
PADI3	0	genome.wustl.edu	37	1	17609396	17609396	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	17609396	17609396	T	A	SNP	PADI3	ENST00000375460	human	ensembl	74_37	+1	known	missense	c.1817	p.I606N	0.997	pfam_PAD_C,pirsf_Protein-arginine_deiminase_sub	pfam_PAD_C,pfam_Prot_Arg_deaminase_cen_dom,pfam_PAD_N,superfamily_Prot_Arg_deaminase_cen_dom,superfamily_Cupredoxin,pirsf_Protein-arginine_deiminase_sub	-	no_errors	PADI3	HGNC	ENSG00000142619				19	0	0	20	4	16.6667
PAPPA2	0	genome.wustl.edu	37	1	176525547	176525547	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	176525547	176525547	G	A	SNP	PAPPA2	ENST00000367662	human	ensembl	74_37	+1	known	missense	c.89	p.R30H	0.166	NULL	pfam_Notch_dom,pfam_Sushi_SCR_CCP,pfam_Peptidase_M43,superfamily_ConA-like_lec_gl_sf,superfamily_Sushi_SCR_CCP,superfamily_Fibronectin_type3,superfamily_Notch_dom,smart_LamG-like,smart_Notch_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,tigrfam_Myxo_disulph_rpt	-	no_errors	PAPPA2	HGNC	ENSG00000116183				144	0	0	77	38	33.0435
PAPPA2	0	genome.wustl.edu	37	1	176679181	176679181	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	176679181	176679181	A	C	SNP	PAPPA2	ENST00000367662	human	ensembl	74_37	+1	known	missense	c.3520	p.T1174P	0.490	NULL	pfam_Notch_dom,pfam_Sushi_SCR_CCP,pfam_Peptidase_M43,superfamily_ConA-like_lec_gl_sf,superfamily_Sushi_SCR_CCP,superfamily_Fibronectin_type3,superfamily_Notch_dom,smart_LamG-like,smart_Notch_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,tigrfam_Myxo_disulph_rpt	-	no_errors	PAPPA2	HGNC	ENSG00000116183				159	0	0	129	15	10.4167
PAPPA2	0	genome.wustl.edu	37	1	176679281	176679281	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	176679281	176679281	T	A	SNP	PAPPA2	ENST00000367662	human	ensembl	74_37	+1	known	missense	c.3620	p.V1207D	0.995	NULL	pfam_Notch_dom,pfam_Sushi_SCR_CCP,pfam_Peptidase_M43,superfamily_ConA-like_lec_gl_sf,superfamily_Sushi_SCR_CCP,superfamily_Fibronectin_type3,superfamily_Notch_dom,smart_LamG-like,smart_Notch_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,tigrfam_Myxo_disulph_rpt	-	no_errors	PAPPA2	HGNC	ENSG00000116183				119	0	0	108	12	10
ASTN1	0	genome.wustl.edu	37	1	176838049	176838049	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	176838049	176838049	T	C	SNP	ASTN1	ENST00000367654	human	ensembl	74_37	-1	known	missense	c.3602	p.Y1201C	1.000	NULL	superfamily_Fibronectin_type3,smart_EG-like_dom,smart_MACPF,pfscan_Fibronectin_type3	-	no_errors	ASTN1	HGNC	ENSG00000152092				118	1	0.840336	109	9	7.62712
ASTN1	0	genome.wustl.edu	37	1	176853605	176853605	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	176853605	176853605	G	A	SNP	ASTN1	ENST00000367654	human	ensembl	74_37	-1	known	silent	c.3120	p.H1040	0.035	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	superfamily_Fibronectin_type3,smart_EG-like_dom,smart_MACPF,pfscan_Fibronectin_type3	-	no_errors	ASTN1	HGNC	ENSG00000152092				105	0	0	55	15	21.4286
PADI6	0	genome.wustl.edu	37	1	17720850	17720850	+	RNA	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	17720850	17720850	A	G	SNP	PADI6	ENST00000358481	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	PADI6	HGNC	ENSG00000256049				23	0	0	31	6	16.2162
RCC2	0	genome.wustl.edu	37	1	17747324	17747324	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	17747324	17747324	T	G	SNP	RCC2	ENST00000375433	human	ensembl	74_37	-1	known	missense	c.745	p.I249L	1.000	pfam_Reg_chr_condens,superfamily_RCC1/BLIP-II,pfscan_Reg_chr_condens	pfam_Reg_chr_condens,superfamily_RCC1/BLIP-II,prints_Reg_chr_condens,pfscan_Reg_chr_condens	-	no_errors	RCC2	HGNC	ENSG00000179051				84	0	0	56	9	13.8462
RCC2	0	genome.wustl.edu	37	1	17749252	17749252	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	17749252	17749252	C	T	SNP	RCC2	ENST00000375433	human	ensembl	74_37	-1	known	missense	c.604	p.E202K	0.869	pfam_Reg_chr_condens,superfamily_RCC1/BLIP-II,pfscan_Reg_chr_condens	pfam_Reg_chr_condens,superfamily_RCC1/BLIP-II,prints_Reg_chr_condens,pfscan_Reg_chr_condens	-	no_errors	RCC2	HGNC	ENSG00000179051				83	0	0	59	18	23.3766
RASAL2	0	genome.wustl.edu	37	1	178252710	178252710	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	178252710	178252710	C	T	SNP	RASAL2	ENST00000367649	human	ensembl	74_37	+1	known	missense	c.214	p.P72S	1.000	smart_Pleckstrin_homology	pfam_DUF3498,pfam_RasGAP,pfam_Pleckstrin_homology,pfam_C2_dom,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,superfamily_PP1_inhibitor,smart_Pleckstrin_homology,smart_C2_dom,smart_RasGAP,pfscan_Pleckstrin_homology,pfscan_RasGAP	-	no_errors	RASAL2	HGNC	ENSG00000075391				112	0	0	90	12	11.7647
AXDND1	0	genome.wustl.edu	37	1	179363085	179363085	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	179363085	179363085	A	G	SNP	AXDND1	ENST00000367618	human	ensembl	74_37	+1	known	missense	c.911	p.D304G	0.985	pfam_Axonemal_dynein_light_chain	pfam_Axonemal_dynein_light_chain	-	no_errors	AXDND1	HGNC	ENSG00000162779				136	0	0	117	11	8.59375
CEP350	0	genome.wustl.edu	37	1	179983259	179983259	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	179983259	179983259	A	G	SNP	CEP350	ENST00000367607	human	ensembl	74_37	+1	known	silent	c.1671	p.S557	0.001	NULL	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,pfscan_CAP-Gly_domain	-	no_errors	CEP350	HGNC	ENSG00000135837				30	0	0	26	3	10.3448
CEP350	0	genome.wustl.edu	37	1	180000515	180000515	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	180000515	180000515	G	A	SNP	CEP350	ENST00000367607	human	ensembl	74_37	+1	known	missense	c.3611	p.R1204H	0.858	NULL	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,pfscan_CAP-Gly_domain	-	no_errors	CEP350	HGNC	ENSG00000135837				56	0	0	30	8	21.0526
CEP350	0	genome.wustl.edu	37	1	180064877	180064877	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	180064877	180064877	G	A	SNP	CEP350	ENST00000367607	human	ensembl	74_37	+1	known	missense	c.8731	p.E2911K	0.996	NULL	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,pfscan_CAP-Gly_domain	-	no_errors	CEP350	HGNC	ENSG00000135837				115	0	0	66	7	9.58904
ARHGEF10L	0	genome.wustl.edu	37	1	18021710	18021710	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	18021710	18021710	G	A	SNP	ARHGEF10L	ENST00000361221	human	ensembl	74_37	+1	known	missense	c.3242	p.G1081D	1.000	superfamily_WD40_repeat_dom	pfam_DH-domain,superfamily_DH-domain,superfamily_WD40_repeat_dom,smart_DH-domain,pfscan_DH-domain	-	no_errors	ARHGEF10L	HGNC	ENSG00000074964				50	0	0	56	6	9.67742
LHX4	0	genome.wustl.edu	37	1	180235620	180235620	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	180235620	180235620	C	A	SNP	LHX4	ENST00000263726	human	ensembl	74_37	+1	known	nonsense	c.342	p.C114*	1.000	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeobox_dom,pfscan_Znf_LIM,pfscan_Homeobox_dom	-	no_errors	LHX4	HGNC	ENSG00000121454				55	0	0	67	4	5.6338
LOC100527964	0	genome.wustl.edu	37	1	180240896	180240896	+	RNA	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	180240896	180240896	C	T	SNP	LOC100527964	ENST00000415414	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP5-1180C10.2	Clone_based_vega_gene	ENSG00000230124				80	0	0	75	17	18.4783
LHX4	0	genome.wustl.edu	37	1	180243369	180243369	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	180243369	180243369	C	T	SNP	LHX4	ENST00000263726	human	ensembl	74_37	+1	known	silent	c.828	p.N276	1.000	NULL	pfam_Znf_LIM,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeobox_dom,pfscan_Znf_LIM,pfscan_Homeobox_dom	-	no_errors	LHX4	HGNC	ENSG00000121454				107	0	0	100	13	11.5044
LHX4	0	genome.wustl.edu	37	1	180243511	180243511	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	180243511	180243511	G	A	SNP	LHX4	ENST00000263726	human	ensembl	74_37	+1	known	missense	c.970	p.A324T	1.000	NULL	pfam_Znf_LIM,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeobox_dom,pfscan_Znf_LIM,pfscan_Homeobox_dom	-	no_errors	LHX4	HGNC	ENSG00000121454				207	0	0	201	14	6.51163
ACBD6	0	genome.wustl.edu	37	1	180399357	180399357	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	180399357	180399357	C	T	SNP	ACBD6	ENST00000367595	human	ensembl	74_37	-1	known	missense	c.425	p.G142D	1.000	NULL	pfam_Acyl-CoA-binding_protein,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_Acyl-CoA-binding_protein,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Acyl-CoA-binding_protein,prints_Ankyrin_rpt	-	no_errors	ACBD6	HGNC	ENSG00000135847				145	0	0	98	10	9.25926
STX6	0	genome.wustl.edu	37	1	180953816	180953816	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	180953816	180953816	T	A	SNP	STX6	ENST00000258301	human	ensembl	74_37	-1	known	missense	c.688	p.S230C	1.000	NULL	pfam_Syntaxin-6_N,pfam_T_SNARE_dom,superfamily_t-SNARE,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	STX6	HGNC	ENSG00000135823				65	0	0	41	5	10.8696
MR1	0	genome.wustl.edu	37	1	181022773	181022773	+	Silent	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	181022773	181022773	G	T	SNP	MR1	ENST00000367580	human	ensembl	74_37	+1	known	silent	c.945	p.L315	0.065	NULL	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like_dom,prints_MHC_I_a	-	no_errors	MR1	HGNC	ENSG00000153029				157	1	0.632911	128	13	9.21986
IER5	0	genome.wustl.edu	37	1	181059004	181059004	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	181059004	181059004	A	G	SNP	IER5	ENST00000367577	human	ensembl	74_37	+1	known	silent	c.966	p.T322	0.993	pfam_IER	pfam_IER	-	no_errors	IER5	HGNC	ENSG00000162783				27	0	0	22	6	21.4286
CACNA1E	0	genome.wustl.edu	37	1	181764126	181764126	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	181764126	181764126	C	T	SNP	CACNA1E	ENST00000367573	human	ensembl	74_37	+1	known	missense	c.6154	p.R2052W	1.000	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_hand_dom,prints_VDCCAlpha1,prints_VDCC_R_a1su	-	no_errors	CACNA1E	HGNC	ENSG00000198216				57	0	0	53	5	8.62069
GLUL	0	genome.wustl.edu	37	1	182355457	182355457	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	182355457	182355457	A	G	SNP	GLUL	ENST00000311223	human	ensembl	74_37	-1	known	missense	c.409	p.Y137H	1.000	pfam_Gln_synth_cat_dom	pfam_Gln_synth_cat_dom,pfam_Gln_synt_beta,superfamily_Gln_synt_beta	-	no_errors	GLUL	HGNC	ENSG00000135821				173	0	0	176	17	8.80829
RNASEL	0	genome.wustl.edu	37	1	182550471	182550471	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	182550471	182550471	A	G	SNP	RNASEL	ENST00000367559	human	ensembl	74_37	-1	known	silent	c.1794	p.N598	0.863	pfam_KEN_dom	pfam_Ankyrin_rpt,pfam_KEN_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Ankyrin_rpt-contain_dom,superfamily_Kinase-like_dom,smart_Ankyrin_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_PUG-dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Prot_kinase_dom,prints_Ankyrin_rpt	-	no_errors	RNASEL	HGNC	ENSG00000135828				168	0	0	115	10	8
DHX9	0	genome.wustl.edu	37	1	182856359	182856359	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	182856359	182856359	C	T	SNP	DHX9	ENST00000367549	human	ensembl	74_37	+1	known	silent	c.3603	p.G1201	0.019	NULL	pfam_dsRNA-bd_dom,pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DUF1605,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_dsRNA-bd_dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_dsRNA-bd_dom	-	no_errors	DHX9	HGNC	ENSG00000135829				140	0	0	121	9	6.92308
LAMC1	0	genome.wustl.edu	37	1	183086546	183086546	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	183086546	183086546	C	T	SNP	LAMC1	ENST00000258341	human	ensembl	74_37	+1	known	silent	c.1656	p.D552	0.139	pfscan_Laminin_B_type_IV	pfam_Laminin_N,pfam_EGF_laminin,pfam_Laminin_B_type_IV,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMC1	HGNC	ENSG00000135862				43	0	0	31	5	13.8889
LAMC2	0	genome.wustl.edu	37	1	183208692	183208692	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	183208692	183208692	T	C	SNP	LAMC2	ENST00000264144	human	ensembl	74_37	+1	known	silent	c.3063	p.I1021	0.296	NULL	pfam_EGF_laminin,pfam_Laminin_B_type_IV,superfamily_Growth_fac_rcpt_N_dom,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin	-	no_errors	LAMC2	HGNC	ENSG00000058085				89	0	0	98	9	8.41121
SMG7	0	genome.wustl.edu	37	1	183506324	183506324	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	183506324	183506324	A	C	SNP	SMG7	ENST00000507469	human	ensembl	74_37	+1	known	missense	c.1208	p.H403P	1.000	NULL	pfam_EST1	-	no_errors	SMG7	HGNC	ENSG00000116698				131	0	0	102	10	8.92857
EDEM3	0	genome.wustl.edu	37	1	184663337	184663337	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	184663337	184663337	G	A	SNP	EDEM3	ENST00000318130	human	ensembl	74_37	-1	known	missense	c.2659	p.L887F	0.113	NULL	pfam_Glyco_hydro_47,pfam_Protease-assoc_domain,superfamily_Glyco_hydro_47,prints_Glyco_hydro_47	-	no_errors	EDEM3	HGNC	ENSG00000116406				77	0	0	59	6	9.23077
FAM129A	0	genome.wustl.edu	37	1	184764990	184764990	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	184764990	184764990	T	C	SNP	FAM129A	ENST00000367511	human	ensembl	74_37	-1	known	silent	c.1908	p.K636	0.010	NULL	NULL	-	no_errors	FAM129A	HGNC	ENSG00000135842				98	0	0	90	7	7.21649
FAM129A	0	genome.wustl.edu	37	1	184765096	184765096	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	184765096	184765096	G	T	SNP	FAM129A	ENST00000367511	human	ensembl	74_37	-1	known	missense	c.1802	p.A601D	0.000	NULL	NULL	-	no_errors	FAM129A	HGNC	ENSG00000135842				111	0	0	106	7	6.19469
TRMT1L	0	genome.wustl.edu	37	1	185089303	185089303	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	185089303	185089303	A	T	SNP	TRMT1L	ENST00000367506	human	ensembl	74_37	-1	known	missense	c.2050	p.F684I	1.000	pfam_TRM1	pfam_TRM1,pfam_tRNA_Trfase_Trm5/Tyw2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	TRMT1L	HGNC	ENSG00000121486				194	0	0	145	16	9.93789
IVNS1ABP	0	genome.wustl.edu	37	1	185267079	185267079	+	RNA	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	185267079	185267079	A	G	SNP	IVNS1ABP	ENST00000459929	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.623	-	-	-	no_errors	IVNS1ABP	HGNC	ENSG00000116679				43	0	0	31	4	11.4286
HMCN1	0	genome.wustl.edu	37	1	185970779	185970779	+	Silent	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	185970779	185970779	C	A	SNP	HMCN1	ENST00000271588	human	ensembl	74_37	+1	known	silent	c.4254	p.L1418	0.997	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd_dom,pfam_Thrombospondin_1_rpt,superfamily_GFP,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom	-	no_errors	HMCN1	HGNC	ENSG00000143341				111	0	0	80	10	11.1111
HMCN1	0	genome.wustl.edu	37	1	186055437	186055437	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	186055437	186055437	A	G	SNP	HMCN1	ENST00000271588	human	ensembl	74_37	+1	known	missense	c.8944	p.I2982V	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd_dom,pfam_Thrombospondin_1_rpt,superfamily_GFP,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom	-	no_errors	HMCN1	HGNC	ENSG00000143341				118	0	0	78	8	9.30233
HMCN1	0	genome.wustl.edu	37	1	186114613	186114613	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	186114613	186114613	G	A	SNP	HMCN1	ENST00000271588	human	ensembl	74_37	+1	known	missense	c.14345	p.R4782H	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd_dom,pfam_Thrombospondin_1_rpt,superfamily_GFP,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom	-	no_errors	HMCN1	HGNC	ENSG00000143341				49	0	0	34	6	15
HMCN1	0	genome.wustl.edu	37	1	186121905	186121905	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	186121905	186121905	A	G	SNP	HMCN1	ENST00000271588	human	ensembl	74_37	+1	known	missense	c.14920	p.I4974V	0.008	pfam_G2_nidogen/fibulin_G2F,superfamily_GFP,smart_G2_nidogen/fibulin_G2F,pfscan_G2_nidogen/fibulin_G2F	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd_dom,pfam_Thrombospondin_1_rpt,superfamily_GFP,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom	-	no_errors	HMCN1	HGNC	ENSG00000143341				143	0	0	111	13	10.4839
HMCN1	0	genome.wustl.edu	37	1	186147639	186147639	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	186147639	186147639	A	G	SNP	HMCN1	ENST00000271588	human	ensembl	74_37	+1	known	silent	c.16035	p.Q5345	0.974	pfam_EGF-like_Ca-bd_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd_dom,pfam_Thrombospondin_1_rpt,superfamily_GFP,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom	-	no_errors	HMCN1	HGNC	ENSG00000143341				217	0	0	185	13	6.56566
HMCN1	0	genome.wustl.edu	37	1	186147733	186147733	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	186147733	186147733	C	T	SNP	HMCN1	ENST00000271588	human	ensembl	74_37	+1	known	missense	c.16129	p.P5377S	1.000	superfamily_Growth_fac_rcpt_N_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd_dom,pfam_Thrombospondin_1_rpt,superfamily_GFP,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom	-	no_errors	HMCN1	HGNC	ENSG00000143341				224	0	0	220	12	5.17241
HMCN1	0	genome.wustl.edu	37	1	186151335	186151335	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	186151335	186151335	C	T	SNP	HMCN1	ENST00000271588	human	ensembl	74_37	+1	known	missense	c.16330	p.H5444Y	1.000	pfam_EGF-like_Ca-bd_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd_dom,pfam_Thrombospondin_1_rpt,superfamily_GFP,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom	-	no_errors	HMCN1	HGNC	ENSG00000143341				133	0	0	63	22	25.8824
HMCN1	0	genome.wustl.edu	37	1	186157083	186157083	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	186157083	186157083	A	C	SNP	HMCN1	ENST00000271588	human	ensembl	74_37	+1	known	missense	c.16483	p.S5495R	1.000	pfam_EGF-like_Ca-bd_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd_dom,pfam_Thrombospondin_1_rpt,superfamily_GFP,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom	-	no_errors	HMCN1	HGNC	ENSG00000143341				113	0	0	118	9	7.08661
TPR	0	genome.wustl.edu	37	1	186283791	186283791	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	186283791	186283791	C	T	SNP	TPR	ENST00000367478	human	ensembl	74_37	-1	known	missense	c.7006	p.V2336I	1.000	NULL	pfam_TPR_MLP1_2,superfamily_Prefoldin,superfamily_tRNA-bd_arm	-	no_errors	TPR	HGNC	ENSG00000047410				92	0	0	55	17	23.6111
TPR	0	genome.wustl.edu	37	1	186287715	186287715	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	186287715	186287715	T	C	SNP	TPR	ENST00000367478	human	ensembl	74_37	-1	known	missense	c.6685	p.T2229A	0.536	NULL	pfam_TPR_MLP1_2,superfamily_Prefoldin,superfamily_tRNA-bd_arm	-	no_errors	TPR	HGNC	ENSG00000047410				84	0	0	53	8	13.1148
TPR	0	genome.wustl.edu	37	1	186291522	186291522	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	186291522	186291522	T	G	SNP	TPR	ENST00000367478	human	ensembl	74_37	-1	known	missense	c.6389	p.E2130A	1.000	NULL	pfam_TPR_MLP1_2,superfamily_Prefoldin,superfamily_tRNA-bd_arm	-	no_errors	TPR	HGNC	ENSG00000047410				61	0	0	41	4	8.88889
TPR	0	genome.wustl.edu	37	1	186302287	186302287	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	186302287	186302287	G	A	SNP	TPR	ENST00000367478	human	ensembl	74_37	-1	known	missense	c.5422	p.R1808W	0.997	NULL	pfam_TPR_MLP1_2,superfamily_Prefoldin,superfamily_tRNA-bd_arm	-	no_errors	TPR	HGNC	ENSG00000047410				71	0	0	54	6	10
TPR	0	genome.wustl.edu	37	1	186304584	186304584	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	186304584	186304584	A	G	SNP	TPR	ENST00000367478	human	ensembl	74_37	-1	known	silent	c.4797	p.I1599	1.000	superfamily_Prefoldin	pfam_TPR_MLP1_2,superfamily_Prefoldin,superfamily_tRNA-bd_arm	-	no_errors	TPR	HGNC	ENSG00000047410				164	0	0	127	8	5.92593
TPR	0	genome.wustl.edu	37	1	186315342	186315342	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	186315342	186315342	C	A	SNP	TPR	ENST00000367478	human	ensembl	74_37	-1	known	missense	c.3021	p.K1007N	0.530	superfamily_Prefoldin	pfam_TPR_MLP1_2,superfamily_Prefoldin,superfamily_tRNA-bd_arm	-	no_errors	TPR	HGNC	ENSG00000047410				103	0	0	72	9	11.1111
C1orf27	0	genome.wustl.edu	37	1	186386684	186386684	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	186386684	186386684	A	G	SNP	C1orf27	ENST00000287859	human	ensembl	74_37	+1	known	missense	c.1195	p.S399G	0.973	NULL	NULL	-	no_errors	C1orf27	HGNC	ENSG00000157181				32	0	0	14	3	17.6471
PLA2G4A	0	genome.wustl.edu	37	1	186919835	186919835	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	186919835	186919835	T	C	SNP	PLA2G4A	ENST00000367466	human	ensembl	74_37	+1	known	silent	c.1311	p.S437	0.984	pfam_LysoPLipase_cat_dom,superfamily_Acyl_Trfase/lysoPLipase,smart_LysoPLipase_cat_dom,pfscan_LysoPLipase_cat_dom	pfam_LysoPLipase_cat_dom,pfam_C2_dom,superfamily_Acyl_Trfase/lysoPLipase,superfamily_C2_dom,smart_C2_dom,smart_LysoPLipase_cat_dom,pfscan_C2_dom,pfscan_LysoPLipase_cat_dom	-	no_errors	PLA2G4A	HGNC	ENSG00000116711				66	0	0	44	4	8.33333
BRINP3	0	genome.wustl.edu	37	1	190067601	190067601	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	190067601	190067601	G	A	SNP	BRINP3	ENST00000367462	human	ensembl	74_37	-1	known	silent	c.1848	p.N616	1.000	NULL	pfam_MACPF,smart_MACPF	-	no_errors	BRINP3	HGNC	ENSG00000162670				318	0	0	265	18	6.36042
BRINP3	0	genome.wustl.edu	37	1	190129803	190129803	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	190129803	190129803	T	C	SNP	BRINP3	ENST00000367462	human	ensembl	74_37	-1	known	silent	c.1179	p.R393	1.000	NULL	pfam_MACPF,smart_MACPF	-	no_errors	BRINP3	HGNC	ENSG00000162670				127	0	0	93	9	8.82353
BRINP3	0	genome.wustl.edu	37	1	190130020	190130020	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	190130020	190130020	T	C	SNP	BRINP3	ENST00000367462	human	ensembl	74_37	-1	known	missense	c.962	p.D321G	1.000	NULL	pfam_MACPF,smart_MACPF	-	no_errors	BRINP3	HGNC	ENSG00000162670				96	0	0	55	21	27.6316
TROVE2	0	genome.wustl.edu	37	1	193038252	193038252	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	193038252	193038252	A	G	SNP	TROVE2	ENST00000367441	human	ensembl	74_37	+1	known	missense	c.68	p.Y23C	0.014	pfam_TROVE,pfscan_TROVE	pfam_TROVE,pfscan_TROVE	-	no_errors	TROVE2	HGNC	ENSG00000116747				85	0	0	57	4	6.55738
CDC73	0	genome.wustl.edu	37	1	193094253	193094253	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	193094253	193094253	A	G	SNP	CDC73	ENST00000367435	human	ensembl	74_37	+1	known	missense	c.143	p.E48G	1.000	NULL	pfam_RNA_pol_access_fac_Cdc73	-	no_errors	CDC73	HGNC	ENSG00000134371				67	0	0	42	5	10.6383
UBR4	0	genome.wustl.edu	37	1	19403330	19403330	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	19403330	19403330	C	T	SNP	UBR4	ENST00000375267	human	ensembl	74_37	-1	known	missense	c.15454	p.D5152N	1.000	NULL	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR4	HGNC	ENSG00000127481				165	0	0	135	10	6.89655
UBR4	0	genome.wustl.edu	37	1	19440266	19440266	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	19440266	19440266	T	C	SNP	UBR4	ENST00000375267	human	ensembl	74_37	-1	known	missense	c.11384	p.Y3795C	1.000	NULL	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR4	HGNC	ENSG00000127481				125	0	0	136	12	8.10811
UBR4	0	genome.wustl.edu	37	1	19447850	19447850	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	19447850	19447850	C	A	SNP	UBR4	ENST00000375267	human	ensembl	74_37	-1	known	missense	c.9974	p.C3325F	1.000	superfamily_ARM-type_fold	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR4	HGNC	ENSG00000127481				86	0	0	59	13	18.0556
UBR4	0	genome.wustl.edu	37	1	19467907	19467907	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	19467907	19467907	G	A	SNP	UBR4	ENST00000375267	human	ensembl	74_37	-1	known	missense	c.8422	p.P2808S	1.000	superfamily_ARM-type_fold	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR4	HGNC	ENSG00000127481				90	0	0	67	7	9.45946
UBR4	0	genome.wustl.edu	37	1	19480342	19480342	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	19480342	19480342	T	C	SNP	UBR4	ENST00000375267	human	ensembl	74_37	-1	known	missense	c.6550	p.T2184A	0.999	superfamily_ARM-type_fold	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR4	HGNC	ENSG00000127481				125	1	0.793651	120	8	6.25
EMC1	0	genome.wustl.edu	37	1	19566468	19566468	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	19566468	19566468	T	C	SNP	EMC1	ENST00000477853	human	ensembl	74_37	-1	known	silent	c.798	p.L266	0.945	NULL	pfam_DUF1620,superfamily_Quinonprotein_ADH-like_supfam	-	no_errors	EMC1	HGNC	ENSG00000127463				33	0	0	28	3	9.67742
MRTO4	0	genome.wustl.edu	37	1	19584466	19584466	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	19584466	19584466	G	A	SNP	MRTO4	ENST00000330263	human	ensembl	74_37	+1	known	missense	c.481	p.A161T	0.898	NULL	pfam_Ribosomal_L10/acidic_P0	-	no_errors	MRTO4	HGNC	ENSG00000053372				53	0	0	67	4	5.6338
AKR7A2	0	genome.wustl.edu	37	1	19633822	19633822	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	19633822	19633822	T	C	SNP	AKR7A2	ENST00000235835	human	ensembl	74_37	-1	known	missense	c.674	p.Y225C	1.000	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom	-	no_errors	AKR7A2	HGNC	ENSG00000053371				59	0	0	62	5	7.46269
PQLC2	0	genome.wustl.edu	37	1	19653883	19653883	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	19653883	19653883	G	A	SNP	PQLC2	ENST00000375153	human	ensembl	74_37	+1	known	missense	c.781	p.G261S	1.000	NULL	superfamily_MFS_dom_general_subst_transpt,smart_CTNS	-	no_errors	PQLC2	HGNC	ENSG00000040487				35	0	0	42	6	12.5
PQLC2	0	genome.wustl.edu	37	1	19655099	19655099	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	19655099	19655099	A	G	SNP	PQLC2	ENST00000375153	human	ensembl	74_37	+1	known	missense	c.838	p.T280A	0.000	NULL	superfamily_MFS_dom_general_subst_transpt,smart_CTNS	-	no_errors	PQLC2	HGNC	ENSG00000040487				26	0	0	25	3	10.7143
CFHR4	0	genome.wustl.edu	37	1	196883700	196883700	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	196883700	196883700	T	C	SNP	CFHR4	ENST00000367416	human	ensembl	74_37	+1	known	missense	c.1253	p.L418S	0.267	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CFHR4	HGNC	ENSG00000134365				96	0	0	100	8	7.40741
ASPM	0	genome.wustl.edu	37	1	197071893	197071893	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	197071893	197071893	T	C	SNP	ASPM	ENST00000367409	human	ensembl	74_37	-1	known	missense	c.6488	p.Y2163C	0.955	superfamily_P-loop_NTPase,superfamily_ARM-type_fold	pfam_IQ_motif_EF-hand-BS,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_CH-domain,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_CH-domain,smart_IQ_motif_EF-hand-BS,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS	-	no_errors	ASPM	HGNC	ENSG00000066279				169	1	0.588235	111	10	8.26446
ASPM	0	genome.wustl.edu	37	1	197093357	197093357	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	197093357	197093357	A	G	SNP	ASPM	ENST00000367409	human	ensembl	74_37	-1	known	silent	c.3273	p.D1091	0.000	superfamily_CH-domain,superfamily_ARM-type_fold	pfam_IQ_motif_EF-hand-BS,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_CH-domain,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_CH-domain,smart_IQ_motif_EF-hand-BS,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS	-	no_errors	ASPM	HGNC	ENSG00000066279				123	0	0	63	5	7.35294
ASPM	0	genome.wustl.edu	37	1	197094055	197094055	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	197094055	197094055	T	C	SNP	ASPM	ENST00000367409	human	ensembl	74_37	-1	known	missense	c.3113	p.D1038G	0.997	superfamily_CH-domain,superfamily_ARM-type_fold,smart_CH-domain,pfscan_CH-domain	pfam_IQ_motif_EF-hand-BS,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_CH-domain,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_CH-domain,smart_IQ_motif_EF-hand-BS,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS	-	no_errors	ASPM	HGNC	ENSG00000066279				216	1	0.460829	180	10	5.26316
ASPM	0	genome.wustl.edu	37	1	197097627	197097627	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	197097627	197097627	G	A	SNP	ASPM	ENST00000367409	human	ensembl	74_37	-1	known	missense	c.2929	p.R977C	1.000	superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_IQ_motif_EF-hand-BS,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_CH-domain,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_CH-domain,smart_IQ_motif_EF-hand-BS,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS	-	no_errors	ASPM	HGNC	ENSG00000066279				123	0	0	65	16	19.7531
ASPM	0	genome.wustl.edu	37	1	197099091	197099091	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	197099091	197099091	T	C	SNP	ASPM	ENST00000367409	human	ensembl	74_37	-1	known	missense	c.2583	p.I861M	0.974	superfamily_CH-domain	pfam_IQ_motif_EF-hand-BS,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_CH-domain,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_CH-domain,smart_IQ_motif_EF-hand-BS,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS	-	no_errors	ASPM	HGNC	ENSG00000066279				116	0	0	107	6	5.30973
ASPM	0	genome.wustl.edu	37	1	197111869	197111869	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	197111869	197111869	T	C	SNP	ASPM	ENST00000367409	human	ensembl	74_37	-1	known	missense	c.1513	p.T505A	0.000	NULL	pfam_IQ_motif_EF-hand-BS,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_CH-domain,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_CH-domain,smart_IQ_motif_EF-hand-BS,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS	-	no_errors	ASPM	HGNC	ENSG00000066279				204	0	0	170	10	5.55556
CRB1	0	genome.wustl.edu	37	1	197390140	197390140	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	197390140	197390140	C	T	SNP	CRB1	ENST00000367400	human	ensembl	74_37	+1	known	silent	c.1182	p.C394	1.000	smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_EG-like_dom,pfam_Laminin_G,pfam_EGF_extracell,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	CRB1	HGNC	ENSG00000134376				147	0	0	103	7	6.36364
LHX9	0	genome.wustl.edu	37	1	197889141	197889141	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	197889141	197889141	G	A	SNP	LHX9	ENST00000367387	human	ensembl	74_37	+1	known	missense	c.214	p.A72T	1.000	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeobox_dom,pfscan_Znf_LIM,pfscan_Homeobox_dom	-	no_errors	LHX9	HGNC	ENSG00000143355				189	1	0.526316	169	15	8.15217
LHX9	0	genome.wustl.edu	37	1	197889164	197889164	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	197889164	197889164	G	A	SNP	LHX9	ENST00000367387	human	ensembl	74_37	+1	known	silent	c.237	p.S79	0.699	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeobox_dom,pfscan_Znf_LIM,pfscan_Homeobox_dom	-	no_errors	LHX9	HGNC	ENSG00000143355				227	0	0	195	18	8.4507
NEK7	0	genome.wustl.edu	37	1	198288607	198288607	+	Silent	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	198288607	198288607	T	G	SNP	NEK7	ENST00000367385	human	ensembl	74_37	+1	known	silent	c.864	p.V288	0.567	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK7	HGNC	ENSG00000151414				107	0	0	77	9	10.4651
PTPRC	0	genome.wustl.edu	37	1	198711111	198711111	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	198711111	198711111	T	C	SNP	PTPRC	ENST00000442510	human	ensembl	74_37	+1	known	silent	c.2517	p.N839	0.109	pirsf_Leukocyte_common_ag,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	pirsf_Leukocyte_common_ag,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Leukocyte_common_ag,pfam_PTP_recept_N,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRC	HGNC	ENSG00000081237				42	0	0	32	5	13.5135
KIF14	0	genome.wustl.edu	37	1	200539049	200539049	+	Silent	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	200539049	200539049	T	A	SNP	KIF14	ENST00000367350	human	ensembl	74_37	-1	known	silent	c.3651	p.S1217	0.223	NULL	pfam_Kinesin_motor_dom,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,smart_FHA_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF14	HGNC	ENSG00000118193				109	0	0	82	5	5.74713
KIF14	0	genome.wustl.edu	37	1	200558367	200558367	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	200558367	200558367	A	G	SNP	KIF14	ENST00000367350	human	ensembl	74_37	-1	known	missense	c.3092	p.M1031T	1.000	NULL	pfam_Kinesin_motor_dom,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,smart_FHA_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF14	HGNC	ENSG00000118193				128	0	0	98	9	8.41121
C1orf106	0	genome.wustl.edu	37	1	200880842	200880842	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	200880842	200880842	C	T	SNP	C1orf106	ENST00000367342	human	ensembl	74_37	+1	known	silent	c.1476	p.R492	0.150	NULL	pfam_DUF3338	-	no_errors	C1orf106	HGNC	ENSG00000163362				59	0	0	60	11	15.493
KIF21B	0	genome.wustl.edu	37	1	200974805	200974805	+	Silent	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	200974805	200974805	G	T	SNP	KIF21B	ENST00000422435	human	ensembl	74_37	-1	known	silent	c.465	p.I155	1.000	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,pfam_WD40_repeat,superfamily_P-loop_NTPase,superfamily_WD40_repeat_dom,superfamily_Prefoldin,smart_Kinesin_motor_dom,smart_WD40_repeat,pfscan_Kinesin_motor_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Kinesin_motor_dom	-	no_errors	KIF21B	HGNC	ENSG00000116852				139	0	0	131	12	8.39161
NAV1	0	genome.wustl.edu	37	1	201618328	201618328	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	201618328	201618328	C	T	SNP	NAV1	ENST00000367296	human	ensembl	74_37	+1	known	missense	c.532	p.P178S	1.000	NULL	superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	NAV1	HGNC	ENSG00000134369				34	0	0	39	5	11.3636
IPO9	0	genome.wustl.edu	37	1	201843974	201843974	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	201843974	201843974	A	G	SNP	IPO9	ENST00000361565	human	ensembl	74_37	+1	known	missense	c.2848	p.M950V	1.000	superfamily_ARM-type_fold	pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	IPO9	HGNC	ENSG00000198700				157	0	0	123	14	10.219
ELF3	0	genome.wustl.edu	37	1	201982112	201982112	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	201982112	201982112	C	T	SNP	ELF3	ENST00000359651	human	ensembl	74_37	+1	known	silent	c.636	p.S212	0.834	NULL	pfam_Ets_dom,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	ELF3	HGNC	ENSG00000163435				37	0	0	30	3	9.09091
GPR37L1	0	genome.wustl.edu	37	1	202097334	202097334	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	202097334	202097334	G	A	SNP	GPR37L1	ENST00000367282	human	ensembl	74_37	+1	known	missense	c.1096	p.V366M	0.780	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPR37_orph,prints_GPCR_Rhodpsn	-	no_errors	GPR37L1	HGNC	ENSG00000170075				78	0	0	70	5	6.66667
LGR6	0	genome.wustl.edu	37	1	202287192	202287192	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	202287192	202287192	C	G	SNP	LGR6	ENST00000367278	human	ensembl	74_37	+1	known	missense	c.1761	p.F587L	0.709	pfam_GPCR_Rhodpsn,prints_GPCR_Rhodpsn	pfam_Leu-rich_rpt,pfam_GPCR_Rhodpsn,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,prints_Gphrmn_rcpt_fam,prints_GPCR_Rhodpsn	-	no_errors	LGR6	HGNC	ENSG00000133067				115	0	0	104	12	10.3448
PPP1R12B	0	genome.wustl.edu	37	1	202464568	202464568	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	202464568	202464568	A	T	SNP	PPP1R12B	ENST00000336894	human	ensembl	74_37	+1	known	missense	c.2293	p.T765S	0.992	pirsf_Pase-1_reg_su_12A/B/C_euk	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pirsf_Pase-1_reg_su_12A/B/C_euk,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	PPP1R12B	HGNC	ENSG00000077157				47	0	0	57	5	8.06452
PPP1R12B	0	genome.wustl.edu	37	1	202464749	202464749	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	202464749	202464749	G	A	SNP	PPP1R12B	ENST00000336894	human	ensembl	74_37	+1	known	missense	c.2387	p.R796Q	1.000	pirsf_Pase-1_reg_su_12A/B/C_euk	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pirsf_Pase-1_reg_su_12A/B/C_euk,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	PPP1R12B	HGNC	ENSG00000077157				67	0	0	41	9	18
PPFIA4	0	genome.wustl.edu	37	1	203033065	203033065	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	203033065	203033065	G	A	SNP	PPFIA4	ENST00000414050	human	ensembl	74_37	+1	known	missense	c.2105	p.R702H	1.000	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	PPFIA4	HGNC	ENSG00000143847				46	0	0	43	12	21.8182
MYBPH	0	genome.wustl.edu	37	1	203139459	203139459	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	203139459	203139459	C	T	SNP	MYBPH	ENST00000255416	human	ensembl	74_37	-1	known	silent	c.1053	p.S351	0.000	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	MYBPH	HGNC	ENSG00000133055				49	0	0	43	11	20.3704
CHIT1	0	genome.wustl.edu	37	1	203186215	203186215	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	203186215	203186215	T	G	SNP	CHIT1	ENST00000367229	human	ensembl	74_37	-1	known	missense	c.1203	p.K401N	0.000	NULL	pfam_Glyco_hydro18cat,pfam_Chitin-bd_dom,superfamily_Glycoside_hydrolase_SF,superfamily_Chitin-bd_dom,smart_Chitinase_II,smart_Chitin-bd_dom,pfscan_Chitin-bd_dom	-	no_errors	CHIT1	HGNC	ENSG00000133063				74	0	0	77	6	7.22892
SNORA77	0	genome.wustl.edu	37	1	203698783	203698783	+	RNA	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	203698783	203698783	C	T	SNP	SNORA77	ENST00000408716	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.623	-	-	-	no_errors	SNORA77	HGNC	ENSG00000221643				18	0	0	29	5	14.7059
ZC3H11A	0	genome.wustl.edu	37	1	203820223	203820223	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	203820223	203820223	T	C	SNP	ZC3H11A	ENST00000332127	human	ensembl	74_37	+1	known	silent	c.2145	p.T715	0.935	NULL	smart_Znf_CCCH	-	no_errors	ZC3H11A	HGNC	ENSG00000058673				244	0	0	180	27	13.0435
SOX13	0	genome.wustl.edu	37	1	204083710	204083710	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	204083710	204083710	C	A	SNP	SOX13	ENST00000367204	human	ensembl	74_37	+1	known	missense	c.395	p.S132Y	0.819	NULL	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	SOX13	HGNC	ENSG00000143842				89	0	0	74	10	11.9048
ETNK2	0	genome.wustl.edu	37	1	204115797	204115797	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	204115797	204115797	G	A	SNP	ETNK2	ENST00000367201	human	ensembl	74_37	-1	known	missense	c.614	p.T205M	1.000	pfam_Aminoglycoside_PTrfase,superfamily_Kinase-like_dom	pfam_Aminoglycoside_PTrfase,superfamily_Kinase-like_dom	-	no_errors	ETNK2	HGNC	ENSG00000143845				130	0	0	95	23	19.4915
PLEKHA6	0	genome.wustl.edu	37	1	204216588	204216588	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	204216588	204216588	C	T	SNP	PLEKHA6	ENST00000272203	human	ensembl	74_37	-1	known	missense	c.1825	p.A609T	1.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHA6	HGNC	ENSG00000143850				29	0	0	29	15	34.0909
PLEKHA6	0	genome.wustl.edu	37	1	204217956	204217956	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	204217956	204217956	G	A	SNP	PLEKHA6	ENST00000272203	human	ensembl	74_37	-1	known	missense	c.1817	p.A606V	1.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHA6	HGNC	ENSG00000143850				52	0	0	50	6	10.7143
PLEKHA6	0	genome.wustl.edu	37	1	204234146	204234146	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	204234146	204234146	C	T	SNP	PLEKHA6	ENST00000272203	human	ensembl	74_37	-1	known	missense	c.305	p.G102D	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHA6	HGNC	ENSG00000143850				157	0	0	145	9	5.84416
PIK3C2B	0	genome.wustl.edu	37	1	204401362	204401362	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	204401362	204401362	C	T	SNP	PIK3C2B	ENST00000367187	human	ensembl	74_37	-1	known	missense	c.4121	p.R1374H	1.000	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_PI3K_Ras-bd_dom,pfam_Phox,pfam_C2_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,superfamily_Phox,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,smart_Phox,smart_C2_dom,pfscan_C2_dom,pfscan_Phox,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3C2B	HGNC	ENSG00000133056				149	0	0	126	29	18.7097
LRRN2	0	genome.wustl.edu	37	1	204587072	204587072	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	204587072	204587072	A	G	SNP	LRRN2	ENST00000367175	human	ensembl	74_37	-1	known	silent	c.2049	p.S683	0.068	NULL	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LRRN2	HGNC	ENSG00000170382				130	0	0	114	11	8.8
LRRN2	0	genome.wustl.edu	37	1	204588100	204588100	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	204588100	204588100	T	C	SNP	LRRN2	ENST00000367175	human	ensembl	74_37	-1	known	missense	c.1021	p.M341V	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LRRN2	HGNC	ENSG00000170382				31	0	0	32	11	25.5814
LRRN2	0	genome.wustl.edu	37	1	204588840	204588840	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	204588840	204588840	T	C	SNP	LRRN2	ENST00000367175	human	ensembl	74_37	-1	known	missense	c.281	p.N94S	1.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LRRN2	HGNC	ENSG00000170382				82	0	0	83	10	10.7527
LRRN2	0	genome.wustl.edu	37	1	204588931	204588931	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	204588931	204588931	G	A	SNP	LRRN2	ENST00000367175	human	ensembl	74_37	-1	known	missense	c.190	p.P64S	1.000	NULL	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LRRN2	HGNC	ENSG00000170382				61	0	0	70	9	11.3924
PLA2G2C	0	genome.wustl.edu	37	1	20490512	20490512	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	20490512	20490512	C	A	SNP	PLA2G2C	ENST00000247992	human	ensembl	74_37	-1	known	missense	c.425	p.R142M	0.021	pfam_PLipase_A2_dom,superfamily_PLipase_A2_dom,smart_PLipase_A2_dom	pfam_PLipase_A2_dom,superfamily_PLipase_A2_dom,smart_PLipase_A2_dom,prints_PLipase_A2	-	no_errors	PLA2G2C	HGNC	ENSG00000187980				26	0	0	25	4	13.7931
NFASC	0	genome.wustl.edu	37	1	204923419	204923419	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	204923419	204923419	G	A	SNP	NFASC	ENST00000367172	human	ensembl	74_37	+1	known	missense	c.319	p.G107R	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	NFASC	HGNC	ENSG00000163531				37	0	0	44	10	18.5185
CNTN2	0	genome.wustl.edu	37	1	205033516	205033516	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	205033516	205033516	T	A	SNP	CNTN2	ENST00000331830	human	ensembl	74_37	+1	known	missense	c.1307	p.I436N	1.000	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CNTN2	HGNC	ENSG00000184144				175	0	0	134	37	21.6374
TMCC2	0	genome.wustl.edu	37	1	205241020	205241020	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	205241020	205241020	G	T	SNP	TMCC2	ENST00000358024	human	ensembl	74_37	+1	known	missense	c.1898	p.G633V	1.000	pfam_Predicted_TM_coiled-coil_2	pfam_Predicted_TM_coiled-coil_2,superfamily_t-SNARE	-	no_errors	TMCC2	HGNC	ENSG00000133069				93	0	0	93	11	10.5769
LEMD1	0	genome.wustl.edu	37	1	205388445	205388445	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	205388445	205388445	G	T	SNP	LEMD1	ENST00000367153	human	ensembl	74_37	-1	known	missense	c.118	p.Q40K	0.755	pfam_LEM_dom,superfamily_LEM/LEM-like_dom,smart_LEM_dom,pfscan_LEM_dom	pfam_LEM_dom,superfamily_LEM/LEM-like_dom,smart_LEM_dom,pfscan_LEM_dom	-	no_errors	LEMD1	HGNC	ENSG00000186007				121	0	0	81	23	22.1154
LEMD1	0	genome.wustl.edu	37	1	205388453	205388453	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	205388453	205388453	T	C	SNP	LEMD1	ENST00000367153	human	ensembl	74_37	-1	known	missense	c.110	p.K37R	0.981	pfam_LEM_dom,superfamily_LEM/LEM-like_dom,smart_LEM_dom,pfscan_LEM_dom	pfam_LEM_dom,superfamily_LEM/LEM-like_dom,smart_LEM_dom,pfscan_LEM_dom	-	no_errors	LEMD1	HGNC	ENSG00000186007				112	0	0	98	11	10.0917
CDK18	0	genome.wustl.edu	37	1	205496974	205496974	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	205496974	205496974	T	C	SNP	CDK18	ENST00000506784	human	ensembl	74_37	+1	known	missense	c.872	p.I291T	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDK18	HGNC	ENSG00000117266				82	0	0	69	8	10.3896
MFSD4	0	genome.wustl.edu	37	1	205561362	205561362	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	205561362	205561362	G	A	SNP	MFSD4	ENST00000367147	human	ensembl	74_37	+1	known	missense	c.1244	p.S415N	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	MFSD4	HGNC	ENSG00000174514				44	0	0	28	15	34.8837
MFSD4	0	genome.wustl.edu	37	1	205568338	205568338	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	205568338	205568338	T	C	SNP	MFSD4	ENST00000367147	human	ensembl	74_37	+1	known	missense	c.1448	p.L483S	1.000	superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	MFSD4	HGNC	ENSG00000174514				153	0	0	126	10	7.35294
SLC45A3	0	genome.wustl.edu	37	1	205633776	205633776	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	205633776	205633776	C	A	SNP	SLC45A3	ENST00000367145	human	ensembl	74_37	-1	known	missense	c.9	p.Q3H	1.000	NULL	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC45A3	HGNC	ENSG00000158715				74	0	0	102	8	7.27273
NUCKS1	0	genome.wustl.edu	37	1	205689743	205689743	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	205689743	205689743	G	A	SNP	NUCKS1	ENST00000367142	human	ensembl	74_37	-1	known	missense	c.268	p.R90C	1.000	NULL	NULL	-	no_errors	NUCKS1	HGNC	ENSG00000069275				103	0	0	75	10	11.7647
IKBKE	0	genome.wustl.edu	37	1	206664989	206664989	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	206664989	206664989	T	A	SNP	IKBKE	ENST00000367120	human	ensembl	74_37	+1	known	missense	c.1742	p.F581Y	0.956	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	IKBKE	HGNC	ENSG00000143466				58	0	0	44	7	13.7255
CR1	0	genome.wustl.edu	37	1	207753708	207753708	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	207753708	207753708	C	T	SNP	CR1	ENST00000367049	human	ensembl	74_37	+1	known	missense	c.5060	p.S1687F	0.002	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CR1	HGNC	ENSG00000203710				135	0	0	114	13	10.2362
CD46	0	genome.wustl.edu	37	1	207963659	207963659	+	RNA	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	207963659	207963659	A	C	SNP	CD46	ENST00000488596	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.976	-	-	-	no_errors	CD46	HGNC	ENSG00000117335				78	0	0	60	4	6.25
PLXNA2	0	genome.wustl.edu	37	1	208257862	208257862	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	208257862	208257862	T	C	SNP	PLXNA2	ENST00000367033	human	ensembl	74_37	-1	known	missense	c.2161	p.T721A	1.000	NULL	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA2	HGNC	ENSG00000076356				74	0	0	81	5	5.81395
LAMB3	0	genome.wustl.edu	37	1	209799327	209799327	+	Nonsense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	209799327	209799327	T	A	SNP	LAMB3	ENST00000356082	human	ensembl	74_37	-1	known	nonsense	c.1642	p.K548*	0.994	pfam_EGF_laminin,smart_EGF_laminin,pfscan_EGF_laminin	pfam_EGF_laminin,pfam_Laminin_N,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB3	HGNC	ENSG00000196878				42	0	0	38	4	9.52381
KIF17	0	genome.wustl.edu	37	1	20998558	20998558	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	20998558	20998558	C	T	SNP	KIF17	ENST00000247986	human	ensembl	74_37	-1	known	silent	c.2595	p.Q865	1.000	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF17	HGNC	ENSG00000117245				60	0	0	74	4	5.12821
KIF17	0	genome.wustl.edu	37	1	21044008	21044008	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	21044008	21044008	G	A	SNP	KIF17	ENST00000247986	human	ensembl	74_37	-1	known	silent	c.192	p.T64	1.000	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF17	HGNC	ENSG00000117245				80	0	0	69	7	9.21053
HHAT	0	genome.wustl.edu	37	1	210637971	210637971	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	210637971	210637971	A	G	SNP	HHAT	ENST00000391905	human	ensembl	74_37	+1	known	missense	c.979	p.T327A	1.000	pfam_MBOAT_fam	pfam_MBOAT_fam	-	no_errors	HHAT	HGNC	ENSG00000054392				66	0	0	79	10	11.236
HP1BP3	0	genome.wustl.edu	37	1	21097562	21097562	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	21097562	21097562	C	A	SNP	HP1BP3	ENST00000312239	human	ensembl	74_37	-1	known	missense	c.515	p.C172F	1.000	pfam_Histone_H1/H5_H15,smart_Histone_H1/H5_H15	pfam_Histone_H1/H5_H15,smart_Histone_H1/H5_H15	-	no_errors	HP1BP3	HGNC	ENSG00000127483				117	1	0.847458	87	7	7.44681
EIF4G3	0	genome.wustl.edu	37	1	21144005	21144005	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	21144005	21144005	A	T	SNP	EIF4G3	ENST00000374937	human	ensembl	74_37	-1	known	missense	c.4245	p.S1415R	0.920	NULL	pfam_MIF4G-like_typ-3,pfam_Initiation_fac_eIF4g_MI,pfam_W2_domain,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3,smart_Initiation_fac_eIF4g_MI,smart_W2_domain	-	no_errors	EIF4G3	HGNC	ENSG00000075151				112	0	0	62	8	11.4286
RCOR3	0	genome.wustl.edu	37	1	211451523	211451523	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	211451523	211451523	G	T	SNP	RCOR3	ENST00000367005	human	ensembl	74_37	+1	known	missense	c.407	p.R136M	1.000	superfamily_Homeodomain-like	pfam_SANT/Myb,pfam_ELM2_dom,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_ELM2_dom	-	no_errors	RCOR3	HGNC	ENSG00000117625				122	0	0	87	11	11.2245
EIF4G3	0	genome.wustl.edu	37	1	21226422	21226422	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	21226422	21226422	C	A	SNP	EIF4G3	ENST00000374937	human	ensembl	74_37	-1	known	missense	c.1617	p.E539D	1.000	NULL	pfam_MIF4G-like_typ-3,pfam_Initiation_fac_eIF4g_MI,pfam_W2_domain,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3,smart_Initiation_fac_eIF4g_MI,smart_W2_domain	-	no_errors	EIF4G3	HGNC	ENSG00000075151				206	1	0.483092	154	14	8.33333
DTL	0	genome.wustl.edu	37	1	212273797	212273797	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	212273797	212273797	G	A	SNP	DTL	ENST00000366991	human	ensembl	74_37	+1	known	missense	c.1465	p.V489I	0.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DTL	HGNC	ENSG00000143476				76	0	0	70	4	5.40541
TMEM206	0	genome.wustl.edu	37	1	212560349	212560349	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	212560349	212560349	A	G	SNP	TMEM206	ENST00000535273	human	ensembl	74_37	-1	known	missense	c.410	p.L137P	1.000	NULL	NULL	-	no_errors	TMEM206	HGNC	ENSG00000065600				105	0	0	107	9	7.75862
FAM71A	0	genome.wustl.edu	37	1	212799538	212799538	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	212799538	212799538	G	A	SNP	FAM71A	ENST00000294829	human	ensembl	74_37	+1	known	missense	c.1319	p.R440H	0.001	NULL	pfam_DUF3699	-	no_errors	FAM71A	HGNC	ENSG00000162771				28	0	0	26	7	21.2121
TATDN3	0	genome.wustl.edu	37	1	212976085	212976085	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	212976085	212976085	C	T	SNP	TATDN3	ENST00000366974	human	ensembl	74_37	+1	known	missense	c.301	p.R101W	0.984	pfam_TatD_family,pirsf_TatD_family	pfam_TatD_family,pirsf_TatD_family	-	no_errors	TATDN3	HGNC	ENSG00000203705				74	0	0	42	12	22.2222
RPS6KC1	0	genome.wustl.edu	37	1	213302945	213302945	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	213302945	213302945	C	A	SNP	RPS6KC1	ENST00000366960	human	ensembl	74_37	+1	known	missense	c.548	p.A183D	1.000	NULL	pfam_Prot_kinase_dom,pfam_MIT,pfam_Phox,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Phox,smart_Phox,smart_MIT,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Phox,pfscan_Prot_kinase_dom	-	no_errors	RPS6KC1	HGNC	ENSG00000136643				131	0	0	94	6	6
PROX1	0	genome.wustl.edu	37	1	214170459	214170459	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	214170459	214170459	C	T	SNP	PROX1	ENST00000261454	human	ensembl	74_37	+1	known	missense	c.581	p.A194V	1.000	pfam_Homeo_prospero_dom	pfam_Homeo_prospero_dom,superfamily_Homeodomain-like	-	no_errors	PROX1	HGNC	ENSG00000117707				66	0	0	52	4	7.14286
PTPN14	0	genome.wustl.edu	37	1	214557227	214557227	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	214557227	214557227	C	T	SNP	PTPN14	ENST00000366956	human	ensembl	74_37	-1	known	silent	c.1971	p.T657	0.128	pirsf_Tyr_Pase_non-rcpt_typ-14/21	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_FERM_central,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_Dual-sp_phosphatase_cat-dom,superfamily_FERM_central,smart_Band_41_domain,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-14/21,pfscan_FERM_domain,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam	-	no_errors	PTPN14	HGNC	ENSG00000152104				43	0	0	29	11	27.5
CENPF	0	genome.wustl.edu	37	1	214813868	214813868	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	214813868	214813868	T	C	SNP	CENPF	ENST00000366955	human	ensembl	74_37	+1	known	silent	c.2187	p.T729	0.000	NULL	pfam_Centromere_CenpF_N,pfam_Centromere_CenpF_leu-rich_rpt,pfam_CenpF/LEK1_Rb-prot-bd	-	no_errors	CENPF	HGNC	ENSG00000117724				75	0	0	58	9	13.4328
CENPF	0	genome.wustl.edu	37	1	214816273	214816273	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	214816273	214816273	T	C	SNP	CENPF	ENST00000366955	human	ensembl	74_37	+1	known	missense	c.4592	p.L1531P	0.008	NULL	pfam_Centromere_CenpF_N,pfam_Centromere_CenpF_leu-rich_rpt,pfam_CenpF/LEK1_Rb-prot-bd	-	no_errors	CENPF	HGNC	ENSG00000117724				76	0	0	47	17	26.5625
KCNK2	0	genome.wustl.edu	37	1	215342543	215342543	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	215342543	215342543	A	T	SNP	KCNK2	ENST00000470177	human	ensembl	74_37	+1	known	missense	c.359	p.D120V	0.479	prints_2pore_dom_K_chnl_TREK	prints_2pore_dom_K_chnl_TREK	-	no_errors	KCNK2	HGNC	ENSG00000082482				114	0	0	72	8	10
KCTD3	0	genome.wustl.edu	37	1	215751371	215751371	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	215751371	215751371	T	C	SNP	KCTD3	ENST00000259154	human	ensembl	74_37	+1	known	missense	c.344	p.L115S	1.000	superfamily_BTB/POZ_fold,smart_BTB/POZ-like	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,superfamily_WD40_repeat_dom,smart_BTB/POZ-like,smart_WD40_repeat,pfscan_BTB/POZ-like	-	no_errors	KCTD3	HGNC	ENSG00000136636				207	0	0	147	14	8.69565
USH2A	0	genome.wustl.edu	37	1	215901647	215901647	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	215901647	215901647	T	C	SNP	USH2A	ENST00000366943	human	ensembl	74_37	-1	known	missense	c.11791	p.T3931A	0.000	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781				102	1	0.970874	79	7	8.13953
USH2A	0	genome.wustl.edu	37	1	216262383	216262383	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	216262383	216262383	G	A	SNP	USH2A	ENST00000366943	human	ensembl	74_37	-1	known	silent	c.4857	p.G1619	0.999	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Laminin_G,pfscan_Laminin_G	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781				138	0	0	99	6	5.71429
USH2A	0	genome.wustl.edu	37	1	216369957	216369957	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	216369957	216369957	A	G	SNP	USH2A	ENST00000366943	human	ensembl	74_37	-1	known	missense	c.4189	p.Y1397H	0.997	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781				107	1	0.925926	62	4	6.06061
USH2A	0	genome.wustl.edu	37	1	216371840	216371840	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	216371840	216371840	T	C	SNP	USH2A	ENST00000366943	human	ensembl	74_37	-1	known	missense	c.3898	p.S1300G	0.998	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781				89	0	0	70	9	11.3924
GPATCH2	0	genome.wustl.edu	37	1	217793422	217793422	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	217793422	217793422	C	T	SNP	GPATCH2	ENST00000366935	human	ensembl	74_37	-1	known	missense	c.476	p.R159H	1.000	NULL	pfam_G_patch_dom,smart_G_patch_dom,pfscan_G_patch_dom	-	no_errors	GPATCH2	HGNC	ENSG00000092978				175	0	0	152	8	5
ALPL	0	genome.wustl.edu	37	1	21887136	21887136	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	21887136	21887136	A	G	SNP	ALPL	ENST00000374832	human	ensembl	74_37	+1	known	missense	c.79	p.K27E	0.887	superfamily_Alkaline_phosphatase_core	pfam_Alkaline_phosphatase,superfamily_Alkaline_phosphatase_core,smart_Alkaline_phosphatase,prints_Alkaline_phosphatase	-	no_errors	ALPL	HGNC	ENSG00000162551				89	0	0	103	9	8.03571
RAP1GAP	0	genome.wustl.edu	37	1	21934800	21934800	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	21934800	21934800	A	G	SNP	RAP1GAP	ENST00000290101	human	ensembl	74_37	-1	known	missense	c.1394	p.L465P	1.000	NULL	pfam_Rap_GAP_dom,pfam_GoLoco_motif,smart_GoLoco_motif,pfscan_GoLoco_motif,pfscan_Rap_GAP_dom	-	no_errors	RAP1GAP	HGNC	ENSG00000076864				70	0	0	59	5	7.8125
SLC30A10	0	genome.wustl.edu	37	1	220100394	220100394	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	220100394	220100394	T	C	SNP	SLC30A10	ENST00000366926	human	ensembl	74_37	-1	known	missense	c.694	p.K232E	1.000	pfam_Cation_efflux,tigrfam_Cation_efflux	pfam_Cation_efflux,tigrfam_Cation_efflux	-	no_errors	SLC30A10	HGNC	ENSG00000196660				116	0	0	62	20	24.3902
EPRS	0	genome.wustl.edu	37	1	220193341	220193341	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	220193341	220193341	T	C	SNP	EPRS	ENST00000366923	human	ensembl	74_37	-1	known	silent	c.1338	p.L446	0.150	pfam_Glu/Gln-tRNA-synth_Ib_cat-dom,tigrfam_Glu-tRNA-synth_arc/euk	pfam_Glu/Gln-tRNA-synth_Ib_cat-dom,pfam_WHEP-TRS,pfam_Glu/Gln-tRNA-synth_Ib_codon-bd,pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Pro-tRNA_ligase_II_C,pfam_Anticodon-bd,superfamily_Ribosomal_L25/Gln-tRNA_synth,superfamily_Anticodon-bd,superfamily_Pro-tRNA_synth_II,superfamily_S15_NS1_RNA-bd,superfamily_Glutathione-S-Trfase_C-like,smart_Pro-tRNA_ligase_II_C,prints_Glu/Gln-tRNA-synth,prints_Pro-tRNA-ligase_IIa,pfscan_aa-tRNA-synth_II,pfscan_WHEP-TRS,tigrfam_Pro-tRNA-ligase_IIa_arc-type,tigrfam_Glu-tRNA-synth_arc/euk	-	no_errors	EPRS	HGNC	ENSG00000136628				102	0	0	85	9	9.57447
EPRS	0	genome.wustl.edu	37	1	220203728	220203728	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	220203728	220203728	C	T	SNP	EPRS	ENST00000366923	human	ensembl	74_37	-1	known	missense	c.623	p.G208D	1.000	pfam_Glu/Gln-tRNA-synth_Ib_cat-dom,prints_Glu/Gln-tRNA-synth,tigrfam_Glu-tRNA-synth_arc/euk	pfam_Glu/Gln-tRNA-synth_Ib_cat-dom,pfam_WHEP-TRS,pfam_Glu/Gln-tRNA-synth_Ib_codon-bd,pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Pro-tRNA_ligase_II_C,pfam_Anticodon-bd,superfamily_Ribosomal_L25/Gln-tRNA_synth,superfamily_Anticodon-bd,superfamily_Pro-tRNA_synth_II,superfamily_S15_NS1_RNA-bd,superfamily_Glutathione-S-Trfase_C-like,smart_Pro-tRNA_ligase_II_C,prints_Glu/Gln-tRNA-synth,prints_Pro-tRNA-ligase_IIa,pfscan_aa-tRNA-synth_II,pfscan_WHEP-TRS,tigrfam_Pro-tRNA-ligase_IIa_arc-type,tigrfam_Glu-tRNA-synth_arc/euk	-	no_errors	EPRS	HGNC	ENSG00000136628				89	0	0	51	20	28.169
IARS2	0	genome.wustl.edu	37	1	220275602	220275602	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	220275602	220275602	T	C	SNP	IARS2	ENST00000302637	human	ensembl	74_37	+1	known	missense	c.682	p.Y228H	1.000	pfam_aa-tRNA-synth_Ia,pfam_Methionyl/Leucyl_tRNA_Synth,tigrfam_Ile-tRNA-ligase	pfam_aa-tRNA-synth_Ia,pfam_V/L/I-tRNA-synth_anticodon-bd,pfam_Methionyl/Leucyl_tRNA_Synth,pfam_Znf_DNA_glyclase/IsotRNA_synth,superfamily_tRNAsynth_1a_anticodon-bd,superfamily_Val/Leu/Ile-tRNA-synth_edit,prints_Ile-tRNA-ligase,tigrfam_Ile-tRNA-ligase	-	no_errors	IARS2	HGNC	ENSG00000067704				139	0	0	85	11	11.4583
IARS2	0	genome.wustl.edu	37	1	220315249	220315249	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	220315249	220315249	A	G	SNP	IARS2	ENST00000302637	human	ensembl	74_37	+1	known	missense	c.2519	p.H840R	1.000	pfam_V/L/I-tRNA-synth_anticodon-bd,superfamily_tRNAsynth_1a_anticodon-bd,tigrfam_Ile-tRNA-ligase	pfam_aa-tRNA-synth_Ia,pfam_V/L/I-tRNA-synth_anticodon-bd,pfam_Methionyl/Leucyl_tRNA_Synth,pfam_Znf_DNA_glyclase/IsotRNA_synth,superfamily_tRNAsynth_1a_anticodon-bd,superfamily_Val/Leu/Ile-tRNA-synth_edit,prints_Ile-tRNA-ligase,tigrfam_Ile-tRNA-ligase	-	no_errors	IARS2	HGNC	ENSG00000067704				127	0	0	100	9	8.25688
RAB3GAP2	0	genome.wustl.edu	37	1	220324707	220324707	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	220324707	220324707	T	C	SNP	RAB3GAP2	ENST00000358951	human	ensembl	74_37	-1	known	silent	c.4068	p.T1356	0.992	NULL	superfamily_WD40_repeat_dom	-	no_errors	RAB3GAP2	HGNC	ENSG00000118873				201	0	0	161	17	9.55056
RAB3GAP2	0	genome.wustl.edu	37	1	220325021	220325021	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	220325021	220325021	T	C	SNP	RAB3GAP2	ENST00000358951	human	ensembl	74_37	-1	known	missense	c.3953	p.H1318R	0.972	NULL	superfamily_WD40_repeat_dom	-	no_errors	RAB3GAP2	HGNC	ENSG00000118873				160	0	0	131	20	13.245
HLX	0	genome.wustl.edu	37	1	221053336	221053336	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	221053336	221053336	T	C	SNP	HLX	ENST00000366903	human	ensembl	74_37	+1	known	missense	c.137	p.I46T	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_HTH_motif,prints_Homeobox_metazoa	-	no_errors	HLX	HGNC	ENSG00000136630				35	0	0	26	5	16.129
LDLRAD2	0	genome.wustl.edu	37	1	22147988	22147988	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	22147988	22147988	C	T	SNP	LDLRAD2	ENST00000344642	human	ensembl	74_37	+1	known	missense	c.689	p.T230I	0.003	NULL	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,superfamily_CUB_dom,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	-	no_errors	LDLRAD2	HGNC	ENSG00000187942				72	0	0	71	5	6.57895
HSPG2	0	genome.wustl.edu	37	1	22150131	22150131	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	22150131	22150131	G	A	SNP	HSPG2	ENST00000374695	human	ensembl	74_37	-1	known	silent	c.12981	p.N4327	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Laminin_G,pfam_Laminin_B_type_IV,pfam_EGF_laminin,pfam_LDrepeatLR_classA_rpt,pfam_EG-like_dom,superfamily_ConA-like_lec_gl_sf,superfamily_LDrepeatLR_classA_rpt,smart_SEA_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Laminin_B_subgr,smart_EGF_laminin,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_LDrepeatLR_classA_rpt,pfscan_SEA_dom,pfscan_Ig-like_dom,prints_LDrepeatLR_classA_rpt	-	no_errors	HSPG2	HGNC	ENSG00000142798				103	0	0	76	29	27.619
HSPG2	0	genome.wustl.edu	37	1	22154901	22154901	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	22154901	22154901	G	A	SNP	HSPG2	ENST00000374695	human	ensembl	74_37	-1	known	missense	c.12256	p.R4086W	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,pfscan_Laminin_G	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Laminin_G,pfam_Laminin_B_type_IV,pfam_EGF_laminin,pfam_LDrepeatLR_classA_rpt,pfam_EG-like_dom,superfamily_ConA-like_lec_gl_sf,superfamily_LDrepeatLR_classA_rpt,smart_SEA_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Laminin_B_subgr,smart_EGF_laminin,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_LDrepeatLR_classA_rpt,pfscan_SEA_dom,pfscan_Ig-like_dom,prints_LDrepeatLR_classA_rpt	-	no_errors	HSPG2	HGNC	ENSG00000142798				46	0	0	48	12	20
DUSP10	0	genome.wustl.edu	37	1	221879722	221879722	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	221879722	221879722	C	T	SNP	DUSP10	ENST00000366899	human	ensembl	74_37	-1	known	missense	c.898	p.A300T	0.994	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,superfamily_Blood-coag_inhib_Disintegrin,smart_Rhodanese-like_dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Rhodanese-like_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_MKP,prints_Atypical_DUSP	-	no_errors	DUSP10	HGNC	ENSG00000143507				90	0	0	86	16	15.6863
DUSP10	0	genome.wustl.edu	37	1	221912385	221912385	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	221912385	221912385	T	C	SNP	DUSP10	ENST00000366899	human	ensembl	74_37	-1	known	missense	c.702	p.I234M	1.000	pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,pfscan_Rhodanese-like_dom	pfam_Dual-sp_phosphatase_cat-dom,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,superfamily_Blood-coag_inhib_Disintegrin,smart_Rhodanese-like_dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Rhodanese-like_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_MKP,prints_Atypical_DUSP	-	no_errors	DUSP10	HGNC	ENSG00000143507				150	0	0	130	10	7.14286
HHIPL2	0	genome.wustl.edu	37	1	222717326	222717326	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	222717326	222717326	T	C	SNP	HHIPL2	ENST00000343410	human	ensembl	74_37	-1	known	missense	c.527	p.D176G	0.998	pfam_Folate_rcpt-like	pfam_Folate_rcpt-like,pfam_Glc/Sorbosone_DH,superfamily_Quinoprot_gluc/sorb_DH,superfamily_Saposin-like	-	no_errors	HHIPL2	HGNC	ENSG00000143512				86	0	0	93	5	5.10204
TLR5	0	genome.wustl.edu	37	1	223285929	223285929	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	223285929	223285929	G	A	SNP	TLR5	ENST00000342210	human	ensembl	74_37	-1	known	missense	c.445	p.R149C	0.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR5	HGNC	ENSG00000187554				95	0	0	66	5	7.04225
TP53BP2	0	genome.wustl.edu	37	1	223971921	223971921	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	223971921	223971921	C	A	SNP	TP53BP2	ENST00000343537	human	ensembl	74_37	-1	known	nonsense	c.3259	p.G1087*	1.000	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	pfam_Ankyrin_rpt,pfam_SH3_domain,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	TP53BP2	HGNC	ENSG00000143514				169	1	0.588235	155	18	10.4046
FBXO28	0	genome.wustl.edu	37	1	224340859	224340859	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	224340859	224340859	T	C	SNP	FBXO28	ENST00000366862	human	ensembl	74_37	+1	known	missense	c.532	p.Y178H	1.000	NULL	pfam_F-box_dom,superfamily_F-box_dom,pfscan_F-box_dom	-	no_errors	FBXO28	HGNC	ENSG00000143756				119	0	0	89	11	11
WDR26	0	genome.wustl.edu	37	1	224599216	224599216	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	224599216	224599216	T	C	SNP	WDR26	ENST00000414423	human	ensembl	74_37	-1	known	silent	c.1071	p.E357	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_CTLH_C,smart_WD40_repeat,pfscan_LisH_dimerisation,pfscan_CTLH_C,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR26	HGNC	ENSG00000162923				90	0	0	66	12	15.3846
CNIH3	0	genome.wustl.edu	37	1	224804931	224804931	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	224804931	224804931	G	A	SNP	CNIH3	ENST00000272133	human	ensembl	74_37	+1	known	missense	c.55	p.A19T	0.912	pfam_Cornichon	pfam_Cornichon	-	no_errors	CNIH3	HGNC	ENSG00000143786				292	0	0	237	22	8.49421
EPHX1	0	genome.wustl.edu	37	1	226030158	226030158	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	226030158	226030158	G	T	SNP	EPHX1	ENST00000272167	human	ensembl	74_37	+1	known	missense	c.1023	p.E341D	1.000	pfam_AB_hydrolase_1,pirsf_Epoxide_hydrolase	pfam_Epoxide_hydro_N,pfam_AB_hydrolase_1,pirsf_Epoxide_hydrolase,prints_Epox_hydrolase-like	-	no_errors	EPHX1	HGNC	ENSG00000143819				145	1	0.684932	144	33	18.6441
PARP1	0	genome.wustl.edu	37	1	226550840	226550840	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	226550840	226550840	T	C	SNP	PARP1	ENST00000366794	human	ensembl	74_37	-1	known	silent	c.2808	p.S936	0.000	pfam_Poly(ADP-ribose)pol_cat_dom,pirsf_NAD_ADPRT,pfscan_Poly(ADP-ribose)pol_cat_dom	pfam_Poly(ADP-ribose)pol_cat_dom,pfam_Poly(ADP-ribose)pol_reg_dom,pfam_Znf_PARP,pfam_PADR1,pfam_WGR_domain,pfam_BRCT_dom,superfamily_Poly(ADP-ribose)pol_reg_dom,superfamily_WGR_domain,superfamily_BRCT_dom,smart_BRCT_dom,smart_WGR_domain,pirsf_NAD_ADPRT,pfscan_BRCT_dom,pfscan_Znf_PARP,pfscan_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_reg_dom	-	no_errors	PARP1	HGNC	ENSG00000143799				104	0	0	104	12	10.3448
PARP1	0	genome.wustl.edu	37	1	226578278	226578278	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	226578278	226578278	C	T	SNP	PARP1	ENST00000366794	human	ensembl	74_37	-1	known	silent	c.450	p.Q150	1.000	pfam_Znf_PARP,pirsf_NAD_ADPRT,pfscan_Znf_PARP	pfam_Poly(ADP-ribose)pol_cat_dom,pfam_Poly(ADP-ribose)pol_reg_dom,pfam_Znf_PARP,pfam_PADR1,pfam_WGR_domain,pfam_BRCT_dom,superfamily_Poly(ADP-ribose)pol_reg_dom,superfamily_WGR_domain,superfamily_BRCT_dom,smart_BRCT_dom,smart_WGR_domain,pirsf_NAD_ADPRT,pfscan_BRCT_dom,pfscan_Znf_PARP,pfscan_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_reg_dom	-	no_errors	PARP1	HGNC	ENSG00000143799				55	0	0	42	4	8.69565
ADCK3	0	genome.wustl.edu	37	1	227152890	227152890	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	227152890	227152890	G	A	SNP	ADCK3	ENST00000366777	human	ensembl	74_37	+1	known	missense	c.367	p.G123R	0.990	NULL	pfam_UbiB_dom,superfamily_Kinase-like_dom	-	no_errors	ADCK3	HGNC	ENSG00000163050				50	0	0	35	10	22.2222
ZNF678	0	genome.wustl.edu	37	1	227843127	227843127	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	227843127	227843127	T	C	SNP	ZNF678	ENST00000397097	human	ensembl	74_37	+1	known	silent	c.1341	p.L447	0.008	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF678	HGNC	ENSG00000181450				52	0	0	24	6	20
WNT3A	0	genome.wustl.edu	37	1	228238548	228238548	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	228238548	228238548	T	C	SNP	WNT3A	ENST00000366753	human	ensembl	74_37	+1	known	missense	c.505	p.F169L	1.000	pfam_Wnt,smart_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt3	-	no_errors	WNT3A	HGNC	ENSG00000154342				44	0	0	47	5	9.61538
ZBTB40	0	genome.wustl.edu	37	1	22832620	22832620	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	22832620	22832620	A	G	SNP	ZBTB40	ENST00000375647	human	ensembl	74_37	+1	known	missense	c.1246	p.T416A	0.999	NULL	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB40	HGNC	ENSG00000184677				85	0	0	61	5	7.57576
IBA57	0	genome.wustl.edu	37	1	228362488	228362488	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	228362488	228362488	G	A	SNP	IBA57	ENST00000366711	human	ensembl	74_37	+1	known	missense	c.437	p.R146Q	1.000	pfam_GCV_T_N	pfam_GCV_T_N,pfam_GCV_T_C,tigrfam_YgfZ/GcvT_CS	-	no_errors	IBA57	HGNC	ENSG00000181873				21	0	0	19	3	13.6364
OBSCN	0	genome.wustl.edu	37	1	228431128	228431128	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	228431128	228431128	C	T	SNP	OBSCN	ENST00000422127	human	ensembl	74_37	+1	known	silent	c.3174	p.G1058	0.404	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358				35	0	0	40	6	13.0435
OBSCN	0	genome.wustl.edu	37	1	228466627	228466627	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	228466627	228466627	T	C	SNP	OBSCN	ENST00000422127	human	ensembl	74_37	+1	known	missense	c.7097	p.V2366A	0.980	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358				60	0	0	57	3	5
OBSCN	0	genome.wustl.edu	37	1	228468349	228468349	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	228468349	228468349	C	T	SNP	OBSCN	ENST00000422127	human	ensembl	74_37	+1	known	silent	c.8049	p.G2683	0.000	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358				88	0	0	80	5	5.88235
OBSCN	0	genome.wustl.edu	37	1	228476538	228476538	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	228476538	228476538	T	C	SNP	OBSCN	ENST00000422127	human	ensembl	74_37	+1	known	missense	c.10288	p.Y3430H	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358				64	0	0	65	4	5.7971
OBSCN	0	genome.wustl.edu	37	1	228482590	228482590	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	228482590	228482590	G	T	SNP	OBSCN	ENST00000422127	human	ensembl	74_37	+1	known	missense	c.11505	p.K3835N	1.000	pfam_Ig_I-set,smart_Ig_V-set_subgr,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358				145	1	0.684932	132	13	8.96552
OBSCN	0	genome.wustl.edu	37	1	228523973	228523973	+	Splice_Site	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	228523973	228523973	T	C	SNP	OBSCN	ENST00000422127	human	ensembl	74_37	+1	known	splice_site	c.16537+2	e63+2	0.997	-	-	-	no_errors	OBSCN	HGNC	ENSG00000154358				79	0	0	82	6	6.81818
RHOU	0	genome.wustl.edu	37	1	228879123	228879123	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	228879123	228879123	A	C	SNP	RHOU	ENST00000366691	human	ensembl	74_37	+1	known	missense	c.413	p.N138T	0.997	pfam_Small_GTPase,pfam_MIRO-like,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RHOU	HGNC	ENSG00000116574				200	0	0	181	10	5.2356
MORN1	0	genome.wustl.edu	37	1	2288909	2288909	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	2288909	2288909	G	A	SNP	MORN1	ENST00000378531	human	ensembl	74_37	-1	known	missense	c.998	p.A333V	0.000	NULL	pfam_MORN,smart_MORN	-	no_errors	MORN1	HGNC	ENSG00000116151				69	0	0	60	5	7.69231
EPHA8	0	genome.wustl.edu	37	1	22924701	22924701	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	22924701	22924701	T	C	SNP	EPHA8	ENST00000166244	human	ensembl	74_37	+1	known	missense	c.2174	p.L725P	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHA8	HGNC	ENSG00000070886				87	0	0	79	6	7.05882
NUP133	0	genome.wustl.edu	37	1	229577634	229577634	+	RNA	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	229577634	229577634	G	A	SNP	NUP133	ENST00000490352	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	NUP133	HGNC	ENSG00000069248				86	0	0	68	4	5.55556
C1QA	0	genome.wustl.edu	37	1	22964157	22964157	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	22964157	22964157	G	A	SNP	C1QA	ENST00000374642	human	ensembl	74_37	+1	known	silent	c.48	p.S16	0.253	NULL	pfam_C1q,pfam_Collagen,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	C1QA	HGNC	ENSG00000173372				45	0	0	39	15	27.7778
ABCB10	0	genome.wustl.edu	37	1	229666069	229666069	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	229666069	229666069	G	A	SNP	ABCB10	ENST00000344517	human	ensembl	74_37	-1	known	missense	c.1522	p.P508S	0.177	superfamily_P-loop_NTPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC1_TM_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCB10	HGNC	ENSG00000135776				186	0	0	122	46	27.381
ABCB10	0	genome.wustl.edu	37	1	229683280	229683280	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	229683280	229683280	G	A	SNP	ABCB10	ENST00000344517	human	ensembl	74_37	-1	known	missense	c.887	p.A296V	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC1_TM_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCB10	HGNC	ENSG00000135776				59	0	0	51	7	12.069
PGBD5	0	genome.wustl.edu	37	1	230492723	230492723	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	230492723	230492723	T	C	SNP	PGBD5	ENST00000321327	human	ensembl	74_37	-1	known	missense	c.766	p.T256A	0.986	NULL	NULL	-	no_errors	PGBD5	HGNC	ENSG00000177614				63	0	0	63	6	8.69565
C1orf198	0	genome.wustl.edu	37	1	230979489	230979489	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	230979489	230979489	C	A	SNP	C1orf198	ENST00000366663	human	ensembl	74_37	-1	known	missense	c.538	p.G180C	0.012	NULL	NULL	-	no_errors	C1orf198	HGNC	ENSG00000119280				144	0	0	112	35	23.8095
EPHB2	0	genome.wustl.edu	37	1	23107938	23107938	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	23107938	23107938	C	T	SNP	EPHB2	ENST00000400191	human	ensembl	74_37	+1	known	missense	c.86	p.A29V	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ephrin_rcpt_lig-bd_dom,superfamily_Galactose-bd-like,smart_Ephrin_rcpt_lig-bd_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	EPHB2	HGNC	ENSG00000133216				29	0	0	27	7	20.5882
TRIM67	0	genome.wustl.edu	37	1	231337179	231337179	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	231337179	231337179	T	A	SNP	TRIM67	ENST00000366652	human	ensembl	74_37	+1	known	missense	c.1450	p.S484T	0.993	NULL	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Fibronectin_type3,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,pfscan_Znf_B-box	-	no_errors	TRIM67	HGNC	ENSG00000119283				26	0	0	15	6	28.5714
EGLN1	0	genome.wustl.edu	37	1	231556926	231556926	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	231556926	231556926	C	T	SNP	EGLN1	ENST00000366641	human	ensembl	74_37	-1	known	missense	c.709	p.D237N	1.000	smart_Pro_4_hyd_alph	pfam_Znf_MYND,pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph,pfscan_Znf_MYND	-	no_errors	EGLN1	HGNC	ENSG00000135766				74	0	0	51	10	16.3934
DISC1	0	genome.wustl.edu	37	1	231906664	231906664	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	231906664	231906664	G	A	SNP	DISC1	ENST00000439617	human	ensembl	74_37	+1	known	silent	c.1482	p.E494	0.701	superfamily_Prefoldin	superfamily_Prefoldin	-	no_errors	DISC1	HGNC	ENSG00000162946				51	0	0	38	7	15.5556
SIPA1L2	0	genome.wustl.edu	37	1	232539873	232539873	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	232539873	232539873	A	G	SNP	SIPA1L2	ENST00000262861	human	ensembl	74_37	-1	known	missense	c.4814	p.L1605P	1.000	pfam_DUF3401	pfam_DUF3401,pfam_Rap_GAP_dom,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP_dom	-	no_errors	SIPA1L2	HGNC	ENSG00000116991				70	0	0	52	5	8.77193
MAP10	0	genome.wustl.edu	37	1	232942838	232942838	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	232942838	232942838	C	A	SNP	MAP10	ENST00000418460	human	ensembl	74_37	+1	known	missense	c.2069	p.S690Y	0.000	NULL	NULL	-	no_errors	MAP10	HGNC	ENSG00000212916				38	0	0	27	4	12.9032
NTPCR	0	genome.wustl.edu	37	1	233091413	233091413	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	233091413	233091413	G	T	SNP	NTPCR	ENST00000366628	human	ensembl	74_37	+1	known	nonsense	c.145	p.G49*	1.000	pfam_Nuc-triphosphatase_THEP1,superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_Nuc-triphosphatase_THEP1,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	NTPCR	HGNC	ENSG00000135778				89	0	0	53	4	7.01754
KDM1A	0	genome.wustl.edu	37	1	23405623	23405623	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	23405623	23405623	T	C	SNP	KDM1A	ENST00000542151	human	ensembl	74_37	+1	known	missense	c.2008	p.W670R	1.000	pfam_Amino_oxidase,pirsf_Hist_Lys-spec_deMease	pfam_Amino_oxidase,pfam_SWIRM,pfam_FAD-dep_OxRdtase,pfam_Pyr_OxRdtase_NAD-bd_dom,pfam_FAD_bind_dom,superfamily_Homeodomain-like,pirsf_Hist_Lys-spec_deMease,pfscan_SWIRM	-	no_errors	KDM1A	HGNC	ENSG00000004487				120	0	0	118	12	9.23077
ARID4B	0	genome.wustl.edu	37	1	235345219	235345219	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	235345219	235345219	A	C	SNP	ARID4B	ENST00000264183	human	ensembl	74_37	-1	known	missense	c.3015	p.N1005K	0.987	NULL	pfam_RBB1NT,pfam_ARID/BRIGHT_DNA-bd,pfam_Tudor-knot,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Chromodomain-like,smart_Tudor,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID4B	HGNC	ENSG00000054267				169	0	0	171	9	5
ARID4B	0	genome.wustl.edu	37	1	235377281	235377281	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	235377281	235377281	C	T	SNP	ARID4B	ENST00000264183	human	ensembl	74_37	-1	known	silent	c.1644	p.E548	1.000	NULL	pfam_RBB1NT,pfam_ARID/BRIGHT_DNA-bd,pfam_Tudor-knot,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Chromodomain-like,smart_Tudor,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID4B	HGNC	ENSG00000054267				113	1	0.877193	98	9	8.41121
ARID4B	0	genome.wustl.edu	37	1	235377332	235377332	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	235377332	235377332	C	T	SNP	ARID4B	ENST00000264183	human	ensembl	74_37	-1	known	silent	c.1593	p.T531	1.000	NULL	pfam_RBB1NT,pfam_ARID/BRIGHT_DNA-bd,pfam_Tudor-knot,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Chromodomain-like,smart_Tudor,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID4B	HGNC	ENSG00000054267				84	0	0	50	19	27.5362
LYST	0	genome.wustl.edu	37	1	235920623	235920623	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	235920623	235920623	G	A	SNP	LYST	ENST00000389793	human	ensembl	74_37	-1	known	silent	c.7017	p.L2339	0.958	superfamily_ARM-type_fold	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	LYST	HGNC	ENSG00000143669				69	0	0	41	12	22.6415
LYST	0	genome.wustl.edu	37	1	235922861	235922861	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	235922861	235922861	C	T	SNP	LYST	ENST00000389793	human	ensembl	74_37	-1	known	missense	c.6292	p.A2098T	0.000	superfamily_ARM-type_fold	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	LYST	HGNC	ENSG00000143669				62	0	0	68	14	17.0732
HEATR1	0	genome.wustl.edu	37	1	236751266	236751266	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	236751266	236751266	C	T	SNP	HEATR1	ENST00000366582	human	ensembl	74_37	-1	known	silent	c.1608	p.S536	0.471	superfamily_ARM-type_fold	pfam_BP28_C_dom,pfam_U3snoRNP10,superfamily_ARM-type_fold	-	no_errors	HEATR1	HGNC	ENSG00000119285				77	0	0	52	3	5.45455
MTR	0	genome.wustl.edu	37	1	237001790	237001790	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	237001790	237001790	T	C	SNP	MTR	ENST00000366577	human	ensembl	74_37	+1	known	missense	c.1406	p.V469A	1.000	pfam_Pterin-binding,superfamily_Dihydropteroate_synth-like,pirsf_MetH,pfscan_Pterin-binding,tigrfam_MetH	pfam_S_MeTrfase,pfam_VitB12-dep_Met_synth_activ_dom,pfam_Pterin-binding,pfam_Cbl-bd_cap,pfam_Cobalamin-bd,superfamily_VitB12-dep_Met_synth_activ_dom,superfamily_S_MeTrfase,superfamily_Dihydropteroate_synth-like,superfamily_Cobalamin-bd,superfamily_Cbl-bd_cap,pirsf_MetH,pfscan_VitB12-dep_Met_synth_activ_dom,pfscan_S_MeTrfase,pfscan_Pterin-binding,tigrfam_MetH	-	no_errors	MTR	HGNC	ENSG00000116984				214	0	0	172	19	9.94764
MTR	0	genome.wustl.edu	37	1	237049633	237049633	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	237049633	237049633	T	C	SNP	MTR	ENST00000366577	human	ensembl	74_37	+1	known	silent	c.2817	p.G939	0.912	superfamily_VitB12-dep_Met_synth_activ_dom,pirsf_MetH,pfscan_VitB12-dep_Met_synth_activ_dom,tigrfam_MetH	pfam_S_MeTrfase,pfam_VitB12-dep_Met_synth_activ_dom,pfam_Pterin-binding,pfam_Cbl-bd_cap,pfam_Cobalamin-bd,superfamily_VitB12-dep_Met_synth_activ_dom,superfamily_S_MeTrfase,superfamily_Dihydropteroate_synth-like,superfamily_Cobalamin-bd,superfamily_Cbl-bd_cap,pirsf_MetH,pfscan_VitB12-dep_Met_synth_activ_dom,pfscan_S_MeTrfase,pfscan_Pterin-binding,tigrfam_MetH	-	no_errors	MTR	HGNC	ENSG00000116984				69	0	0	37	5	11.9048
MTR	0	genome.wustl.edu	37	1	237057735	237057735	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	237057735	237057735	G	A	SNP	MTR	ENST00000366577	human	ensembl	74_37	+1	known	missense	c.3283	p.D1095N	1.000	pfam_VitB12-dep_Met_synth_activ_dom,superfamily_VitB12-dep_Met_synth_activ_dom,pirsf_MetH,pfscan_VitB12-dep_Met_synth_activ_dom,tigrfam_MetH	pfam_S_MeTrfase,pfam_VitB12-dep_Met_synth_activ_dom,pfam_Pterin-binding,pfam_Cbl-bd_cap,pfam_Cobalamin-bd,superfamily_VitB12-dep_Met_synth_activ_dom,superfamily_S_MeTrfase,superfamily_Dihydropteroate_synth-like,superfamily_Cobalamin-bd,superfamily_Cbl-bd_cap,pirsf_MetH,pfscan_VitB12-dep_Met_synth_activ_dom,pfscan_S_MeTrfase,pfscan_Pterin-binding,tigrfam_MetH	-	no_errors	MTR	HGNC	ENSG00000116984				92	0	0	100	6	5.66038
RYR2	0	genome.wustl.edu	37	1	237608788	237608788	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	237608788	237608788	C	T	SNP	RYR2	ENST00000360064	human	ensembl	74_37	+1	known	missense	c.1252	p.R418W	1.000	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626				128	0	0	96	11	10.2804
RYR2	0	genome.wustl.edu	37	1	237617704	237617704	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	237617704	237617704	C	A	SNP	RYR2	ENST00000360064	human	ensembl	74_37	+1	known	missense	c.1300	p.L434I	1.000	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626				87	0	0	72	4	5.26316
RYR2	0	genome.wustl.edu	37	1	237660039	237660039	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	237660039	237660039	T	C	SNP	RYR2	ENST00000360064	human	ensembl	74_37	+1	known	silent	c.2184	p.L728	0.718	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626				195	0	0	168	11	6.14525
LOC100130331	0	genome.wustl.edu	37	1	238090431	238090431	+	RNA	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	238090431	238090431	A	G	SNP	LOC100130331	ENST00000450451	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-193H5.1	Clone_based_vega_gene	ENSG00000237250				41	0	0	43	10	18.8679
E2F2	0	genome.wustl.edu	37	1	23842920	23842920	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	23842920	23842920	G	A	SNP	E2F2	ENST00000361729	human	ensembl	74_37	-1	known	missense	c.952	p.L318F	0.065	NULL	pfam_E2F_TDP	-	no_errors	E2F2	HGNC	ENSG00000007968				31	0	0	32	4	11.1111
CHRM3	0	genome.wustl.edu	37	1	240072456	240072456	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	240072456	240072456	C	T	SNP	CHRM3	ENST00000255380	human	ensembl	74_37	+1	known	missense	c.1705	p.R569C	1.000	prints_Musac_Ach_M3_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Musac_Ach_M3_rcpt,prints_Musac_Ach_rcpt,prints_GPCR_Rhodpsn	-	no_errors	CHRM3	HGNC	ENSG00000133019				71	0	0	58	5	7.93651
FMN2	0	genome.wustl.edu	37	1	240256747	240256747	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	240256747	240256747	G	A	SNP	FMN2	ENST00000319653	human	ensembl	74_37	+1	known	silent	c.1338	p.R446	0.289	NULL	pfam_FH2_Formin,pfam_Formin_homology_1,smart_FH2_Formin,pfscan_DEP_dom	-	no_errors	FMN2	HGNC	ENSG00000155816				80	0	0	66	6	8.33333
FMN2	0	genome.wustl.edu	37	1	240497204	240497204	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	240497204	240497204	T	C	SNP	FMN2	ENST00000319653	human	ensembl	74_37	+1	known	silent	c.4602	p.L1534	1.000	pfam_FH2_Formin,smart_FH2_Formin	pfam_FH2_Formin,pfam_Formin_homology_1,smart_FH2_Formin,pfscan_DEP_dom	-	no_errors	FMN2	HGNC	ENSG00000155816				71	0	0	31	8	20.5128
GREM2	0	genome.wustl.edu	37	1	240656448	240656448	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	240656448	240656448	C	T	SNP	GREM2	ENST00000318160	human	ensembl	74_37	-1	known	missense	c.328	p.V110M	1.000	pfam_DAN,pfam_Cys_knot,smart_Cys_knot_C,pirsf_Gremlin_precursor,pfscan_Cys_knot_C	pfam_DAN,pfam_Cys_knot,smart_Cys_knot_C,pirsf_Gremlin_precursor,pfscan_Cys_knot_C	-	no_errors	GREM2	HGNC	ENSG00000180875				72	0	0	48	20	29.4118
TCEB3	0	genome.wustl.edu	37	1	24078489	24078489	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	24078489	24078489	C	T	SNP	TCEB3	ENST00000418390	human	ensembl	74_37	+1	known	missense	c.1472	p.P491L	0.001	NULL	pfam_RNA_pol_II_trans_fac_SIII_A,pfam_TFIIS_N,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub,pfscan_F-box_dom	-	no_errors	TCEB3	HGNC	ENSG00000011007				90	0	0	50	15	23.0769
TCEB3	0	genome.wustl.edu	37	1	24080852	24080852	+	Splice_Site	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	24080852	24080852	G	T	SNP	TCEB3	ENST00000418390	human	ensembl	74_37	+1	known	splice_site	c.1772-1	e7-1	1.000	-	-	-	no_errors	TCEB3	HGNC	ENSG00000011007				132	0	0	138	11	7.38255
PITHD1	0	genome.wustl.edu	37	1	24113772	24113772	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	24113772	24113772	G	A	SNP	PITHD1	ENST00000246151	human	ensembl	74_37	+1	known	missense	c.542	p.R181Q	1.000	NULL	pfam_PITH_dom,superfamily_Galactose-bd-like	-	no_errors	PITHD1	HGNC	ENSG00000057757				73	0	0	51	14	21.5385
FUCA1	0	genome.wustl.edu	37	1	24175226	24175226	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	24175226	24175226	A	T	SNP	FUCA1	ENST00000374479	human	ensembl	74_37	-1	known	missense	c.1073	p.V358D	0.614	pfam_Glyco_hydro_29,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_29,pirsf_Glyco_hydro_29_sub,prints_Glyco_hydro_29_sub	pfam_Glyco_hydro_29,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_29,pirsf_Glyco_hydro_29_sub,prints_Glyco_hydro_29_sub	-	no_errors	FUCA1	HGNC	ENSG00000179163				94	0	0	61	4	6.15385
CHML	0	genome.wustl.edu	37	1	241798852	241798852	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	241798852	241798852	T	A	SNP	CHML	ENST00000366553	human	ensembl	74_37	-1	known	missense	c.217	p.T73S	0.000	pirsf_Rab_geranylTrfase_A_euk	pfam_GDP_dissociation_inhibitor,pirsf_Rab_geranylTrfase_A_euk,prints_Rab_escort,prints_GDP_dissociation_inhibitor	-	no_errors	CHML	HGNC	ENSG00000203668				294	0	0	227	17	6.96721
EXO1	0	genome.wustl.edu	37	1	242020693	242020693	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	242020693	242020693	C	T	SNP	EXO1	ENST00000348581	human	ensembl	74_37	+1	known	missense	c.452	p.A151V	1.000	pfam_XPG-I_dom,smart_XPG-I_dom,prints_XPG/Rad2	pfam_XPG-I_dom,pfam_XPG_DNA_repair_N,superfamily_5-3_exonuclease_C,smart_XPG_DNA_repair_N,smart_XPG-I_dom,smart_HhH2,prints_XPG/Rad2	-	no_errors	EXO1	HGNC	ENSG00000174371				170	0	0	114	8	6.55738
AKT3	0	genome.wustl.edu	37	1	243727145	243727145	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	243727145	243727145	C	T	SNP	AKT3	ENST00000263826	human	ensembl	74_37	-1	known	silent	c.825	p.E275	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pleckstrin_homology,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom	-	no_errors	AKT3	HGNC	ENSG00000117020				90	0	0	55	10	15.3846
MYOM3	0	genome.wustl.edu	37	1	24419453	24419453	+	Silent	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	24419453	24419453	G	T	SNP	MYOM3	ENST00000330966	human	ensembl	74_37	-1	known	silent	c.1077	p.T359	1.000	pfam_Ig_I-set,smart_Ig_sub	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	MYOM3	HGNC	ENSG00000142661				19	0	0	16	5	23.8095
ZBTB18	0	genome.wustl.edu	37	1	244217659	244217659	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	244217659	244217659	C	T	SNP	ZBTB18	ENST00000358704	human	ensembl	74_37	+1	known	nonsense	c.583	p.R195*	1.000	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB18	HGNC	ENSG00000179456				56	0	0	49	6	10.9091
ZBTB18	0	genome.wustl.edu	37	1	244217906	244217906	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	244217906	244217906	A	T	SNP	ZBTB18	ENST00000358704	human	ensembl	74_37	+1	known	missense	c.830	p.N277I	1.000	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB18	HGNC	ENSG00000179456				78	0	0	65	7	9.72222
ADSS	0	genome.wustl.edu	37	1	244574657	244574657	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	244574657	244574657	G	A	SNP	ADSS	ENST00000366535	human	ensembl	74_37	-1	known	missense	c.1250	p.A417V	1.000	pfam_Adenylosuccinate_synthetase,superfamily_P-loop_NTPase,smart_Adenylosuccinate_synthetase,tigrfam_Adenylosuccinate_synthetase	pfam_Adenylosuccinate_synthetase,superfamily_P-loop_NTPase,smart_Adenylosuccinate_synthetase,tigrfam_Adenylosuccinate_synthetase	-	no_errors	ADSS	HGNC	ENSG00000035687				139	1	0.714286	84	6	6.66667
ADSS	0	genome.wustl.edu	37	1	244595888	244595888	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	244595888	244595888	C	T	SNP	ADSS	ENST00000366535	human	ensembl	74_37	-1	known	missense	c.365	p.G122D	1.000	pfam_Adenylosuccinate_synthetase,superfamily_P-loop_NTPase,smart_Adenylosuccinate_synthetase,tigrfam_Adenylosuccinate_synthetase	pfam_Adenylosuccinate_synthetase,superfamily_P-loop_NTPase,smart_Adenylosuccinate_synthetase,tigrfam_Adenylosuccinate_synthetase	-	no_errors	ADSS	HGNC	ENSG00000035687				216	0	0	126	7	5.26316
C1orf101	0	genome.wustl.edu	37	1	244756860	244756860	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	244756860	244756860	G	A	SNP	C1orf101	ENST00000366531	human	ensembl	74_37	+1	known	silent	c.1830	p.K610	0.127	NULL	NULL	-	no_errors	C1orf101	HGNC	ENSG00000179397				85	0	0	56	5	8.19672
HNRNPU	0	genome.wustl.edu	37	1	245017773	245017773	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	245017773	245017773	A	G	SNP	HNRNPU	ENST00000283179	human	ensembl	74_37	-1	known	silent	c.2457	p.H819	1.000	NULL	pfam_SPRY_rcpt,pfam_SAP_dom,pfam_Zeta_toxin_domain,superfamily_ConA-like_lec_gl_sf,superfamily_P-loop_NTPase,smart_SAP_dom,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_SAP_dom	-	no_errors	HNRNPU	HGNC	ENSG00000153187				139	0	0	69	14	16.8675
HNRNPU	0	genome.wustl.edu	37	1	245019225	245019225	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	245019225	245019225	A	G	SNP	HNRNPU	ENST00000283179	human	ensembl	74_37	-1	known	silent	c.2148	p.G716	0.990	NULL	pfam_SPRY_rcpt,pfam_SAP_dom,pfam_Zeta_toxin_domain,superfamily_ConA-like_lec_gl_sf,superfamily_P-loop_NTPase,smart_SAP_dom,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_SAP_dom	-	no_errors	HNRNPU	HGNC	ENSG00000153187				167	0	0	133	8	5.67376
KIF26B	0	genome.wustl.edu	37	1	245765975	245765975	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	245765975	245765975	T	C	SNP	KIF26B	ENST00000407071	human	ensembl	74_37	+1	known	silent	c.1447	p.L483	0.026	superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF26B	HGNC	ENSG00000162849				93	0	0	79	8	9.1954
KIF26B	0	genome.wustl.edu	37	1	245770996	245770996	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	245770996	245770996	T	C	SNP	KIF26B	ENST00000407071	human	ensembl	74_37	+1	known	missense	c.1601	p.V534A	1.000	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF26B	HGNC	ENSG00000162849				26	0	0	30	4	11.7647
KIF26B	0	genome.wustl.edu	37	1	245849553	245849553	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	245849553	245849553	A	G	SNP	KIF26B	ENST00000407071	human	ensembl	74_37	+1	known	missense	c.3268	p.K1090E	1.000	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF26B	HGNC	ENSG00000162849				85	0	0	80	13	13.9785
KIF26B	0	genome.wustl.edu	37	1	245850411	245850411	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	245850411	245850411	G	A	SNP	KIF26B	ENST00000407071	human	ensembl	74_37	+1	known	missense	c.4126	p.A1376T	0.751	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF26B	HGNC	ENSG00000162849				26	0	0	30	7	18.9189
SMYD3	0	genome.wustl.edu	37	1	246027162	246027162	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	246027162	246027162	C	T	SNP	SMYD3	ENST00000388985	human	ensembl	74_37	-1	known	silent	c.840	p.E280	0.017	NULL	pfam_SET_dom,pfam_Znf_MYND,smart_SET_dom,pfscan_SET_dom,pfscan_Znf_MYND	-	no_errors	SMYD3	HGNC	ENSG00000185420				110	0	0	58	13	18.3099
SMYD3	0	genome.wustl.edu	37	1	246078843	246078843	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	246078843	246078843	T	C	SNP	SMYD3	ENST00000388985	human	ensembl	74_37	-1	known	missense	c.802	p.T268A	0.988	NULL	pfam_SET_dom,pfam_Znf_MYND,smart_SET_dom,pfscan_SET_dom,pfscan_Znf_MYND	-	no_errors	SMYD3	HGNC	ENSG00000185420				97	0	0	81	7	7.95455
GRHL3	0	genome.wustl.edu	37	1	24673056	24673056	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	24673056	24673056	C	T	SNP	GRHL3	ENST00000350501	human	ensembl	74_37	+1	known	missense	c.1468	p.R490C	1.000	NULL	pfam_CP2,superfamily_C2_dom	-	no_errors	GRHL3	HGNC	ENSG00000158055				39	0	0	17	8	32
CNST	0	genome.wustl.edu	37	1	246795222	246795222	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	246795222	246795222	G	T	SNP	CNST	ENST00000366511	human	ensembl	74_37	+1	known	nonsense	c.406	p.G136*	0.983	NULL	NULL	-	no_errors	CNST	HGNC	ENSG00000162852				167	1	0.595238	101	9	8.18182
AHCTF1	0	genome.wustl.edu	37	1	247014121	247014121	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	247014121	247014121	G	A	SNP	AHCTF1	ENST00000326225	human	ensembl	74_37	-1	known	silent	c.5214	p.S1738	0.141	NULL	superfamily_Quinonprotein_ADH-like_supfam	-	no_errors	AHCTF1	HGNC	ENSG00000153207				120	0	0	69	5	6.75676
AHCTF1	0	genome.wustl.edu	37	1	247071023	247071023	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	247071023	247071023	T	C	SNP	AHCTF1	ENST00000326225	human	ensembl	74_37	-1	known	silent	c.621	p.P207	1.000	superfamily_Quinonprotein_ADH-like_supfam	superfamily_Quinonprotein_ADH-like_supfam	-	no_errors	AHCTF1	HGNC	ENSG00000153207				96	0	0	85	7	7.6087
ZNF695	0	genome.wustl.edu	37	1	247151044	247151044	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	247151044	247151044	A	G	SNP	ZNF695	ENST00000339986	human	ensembl	74_37	-1	known	missense	c.773	p.V258A	0.004	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF695	HGNC	ENSG00000197472				67	0	0	47	4	7.84314
ZNF695	0	genome.wustl.edu	37	1	247151183	247151183	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	247151183	247151183	A	G	SNP	ZNF695	ENST00000339986	human	ensembl	74_37	-1	known	missense	c.634	p.Y212H	0.014	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF695	HGNC	ENSG00000197472				171	0	0	104	6	5.45455
ZNF669	0	genome.wustl.edu	37	1	247264102	247264102	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	247264102	247264102	C	T	SNP	ZNF669	ENST00000343381	human	ensembl	74_37	-1	known	silent	c.969	p.T323	0.011	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF669	HGNC	ENSG00000188295				115	0	0	88	5	5.37634
OR6F1	0	genome.wustl.edu	37	1	247875672	247875672	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	247875672	247875672	G	A	SNP	OR6F1	ENST00000302084	human	ensembl	74_37	-1	known	missense	c.386	p.P129L	0.981	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6F1	HGNC	ENSG00000169214				66	0	0	75	9	10.7143
OR1C1	0	genome.wustl.edu	37	1	247920971	247920971	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	247920971	247920971	T	C	SNP	OR1C1	ENST00000408896	human	ensembl	74_37	-1	known	silent	c.738	p.S246	0.766	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR1C1	HGNC	ENSG00000221888				52	0	0	39	6	13.3333
OR11L1	0	genome.wustl.edu	37	1	248004583	248004583	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	248004583	248004583	C	T	SNP	OR11L1	ENST00000355784	human	ensembl	74_37	-1	known	missense	c.616	p.V206M	0.142	pfam_GPCR_Rhodpsn,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR11L1	HGNC	ENSG00000197591				85	0	0	65	10	13.3333
OR2L8	0	genome.wustl.edu	37	1	248112949	248112949	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	248112949	248112949	C	A	SNP	OR2L8	ENST00000357191	human	ensembl	74_37	+1	known	missense	c.790	p.L264M	0.001	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2L8	HGNC	ENSG00000196936				122	1	0.813008	122	7	5.42636
OR2L3	0	genome.wustl.edu	37	1	248224182	248224182	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	248224182	248224182	C	A	SNP	OR2L3	ENST00000359959	human	ensembl	74_37	+1	known	missense	c.199	p.L67I	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2L3	HGNC	ENSG00000198128				415	0	0	325	35	9.72222
OR2T2	0	genome.wustl.edu	37	1	248616313	248616313	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	248616313	248616313	C	A	SNP	OR2T2	ENST00000342927	human	ensembl	74_37	+1	known	missense	c.215	p.T72N	0.003	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2T2	HGNC	ENSG00000196240				168	0	0	169	13	7.14286
OR2G6	0	genome.wustl.edu	37	1	248685734	248685734	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	248685734	248685734	G	A	SNP	OR2G6	ENST00000343414	human	ensembl	74_37	+1	known	missense	c.787	p.A263T	0.003	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2G6	HGNC	ENSG00000188558				111	0	0	82	18	18
OR14I1	0	genome.wustl.edu	37	1	248844710	248844710	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	248844710	248844710	A	G	SNP	OR14I1	ENST00000342623	human	ensembl	74_37	-1	known	missense	c.896	p.M299T	0.002	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Olfact_rcpt	-	no_errors	OR14I1	HGNC	ENSG00000189181				74	0	0	60	7	10.4478
SEPN1	0	genome.wustl.edu	37	1	26135604	26135604	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	26135604	26135604	A	G	SNP	SEPN1	ENST00000354177	human	ensembl	74_37	+1	known	missense	c.733	p.T245A	1.000	NULL	pfscan_EF_hand_dom	-	no_errors	SEPN1	HGNC	ENSG00000162430				74	0	0	78	5	6.0241
PAQR7	0	genome.wustl.edu	37	1	26189996	26189996	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	26189996	26189996	A	C	SNP	PAQR7	ENST00000374296	human	ensembl	74_37	-1	known	missense	c.335	p.L112R	0.057	pfam_HlyIII-related	pfam_HlyIII-related	-	no_errors	PAQR7	HGNC	ENSG00000182749				62	0	0	63	7	10
AIM1L	0	genome.wustl.edu	37	1	26663751	26663751	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	26663751	26663751	A	T	SNP	AIM1L	ENST00000527815	human	ensembl	74_37	-1	known	missense	c.1142	p.I381N	1.000	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin	pfam_Beta/gamma_crystallin,pfam_Ricin_B_lectin,superfamily_G_crystallin-rel,superfamily_Ricin_B_lectin,smart_Beta/gamma_crystallin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	AIM1L	HGNC	ENSG00000176092				88	0	0	72	6	7.69231
RPS6KA1	0	genome.wustl.edu	37	1	26878189	26878189	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	26878189	26878189	A	T	SNP	RPS6KA1	ENST00000531382	human	ensembl	74_37	+1	known	missense	c.470	p.D157V	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	RPS6KA1	HGNC	ENSG00000117676				58	0	0	52	14	21.2121
ZDHHC18	0	genome.wustl.edu	37	1	27176863	27176863	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	27176863	27176863	T	C	SNP	ZDHHC18	ENST00000374142	human	ensembl	74_37	+1	known	missense	c.718	p.F240L	1.000	pfam_Znf_DHHC_palmitoyltrfase,pfscan_Znf_DHHC_palmitoyltrfase	pfam_Znf_DHHC_palmitoyltrfase,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC18	HGNC	ENSG00000204160				96	0	0	81	10	10.989
GPATCH3	0	genome.wustl.edu	37	1	27218931	27218931	+	Silent	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	27218931	27218931	G	T	SNP	GPATCH3	ENST00000361720	human	ensembl	74_37	-1	known	silent	c.1332	p.G444	0.992	pfam_G_patch_dom,smart_G_patch_dom,pfscan_G_patch_dom	pfam_G_patch_dom,smart_G_patch_dom,pfscan_G_patch_dom	-	no_errors	GPATCH3	HGNC	ENSG00000198746				60	0	0	66	4	5.71429
SLC9A1	0	genome.wustl.edu	37	1	27436202	27436202	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	27436202	27436202	C	T	SNP	SLC9A1	ENST00000263980	human	ensembl	74_37	-1	known	missense	c.880	p.G294S	1.000	pfam_Cation/H_exchanger,tigrfam_NaH_exchanger	pfam_Cation/H_exchanger,prints_Na/H_exchanger_1,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A1	HGNC	ENSG00000090020				88	0	0	83	21	20.1923
MAP3K6	0	genome.wustl.edu	37	1	27688704	27688704	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	27688704	27688704	G	T	SNP	MAP3K6	ENST00000357582	human	ensembl	74_37	-1	known	nonsense	c.1293	p.C431*	0.749	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_SAM/pointed,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP3K6	HGNC	ENSG00000142733				34	0	0	36	3	7.69231
DNAJC8	0	genome.wustl.edu	37	1	28530265	28530265	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	28530265	28530265	T	G	SNP	DNAJC8	ENST00000263697	human	ensembl	74_37	-1	known	missense	c.632	p.N211T	1.000	NULL	pfam_DnaJ_domain,superfamily_DnaJ_domain,smart_DnaJ_domain,pfscan_DnaJ_domain,prints_DnaJ_domain	-	no_errors	DNAJC8	HGNC	ENSG00000126698				80	0	0	80	5	5.88235
PHACTR4	0	genome.wustl.edu	37	1	28802790	28802790	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	28802790	28802790	T	C	SNP	PHACTR4	ENST00000373836	human	ensembl	74_37	+1	known	silent	c.1623	p.D541	0.987	NULL	pfam_RPEL_repeat,smart_RPEL_repeat,pfscan_RPEL_repeat	-	no_errors	PHACTR4	HGNC	ENSG00000204138				30	0	0	26	5	16.129
PHACTR4	0	genome.wustl.edu	37	1	28819589	28819589	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	28819589	28819589	C	T	SNP	PHACTR4	ENST00000373836	human	ensembl	74_37	+1	known	silent	c.2109	p.S703	1.000	NULL	pfam_RPEL_repeat,smart_RPEL_repeat,pfscan_RPEL_repeat	-	no_errors	PHACTR4	HGNC	ENSG00000204138				184	0	0	113	12	9.6
PHACTR4	0	genome.wustl.edu	37	1	28819605	28819605	+	Splice_Site	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	28819605	28819605	T	G	SNP	PHACTR4	ENST00000373836	human	ensembl	74_37	+1	known	splice_site	c.2123+2	e12+2	1.000	-	-	-	no_errors	PHACTR4	HGNC	ENSG00000204138				180	0	0	114	12	9.52381
OPRD1	0	genome.wustl.edu	37	1	29189408	29189408	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	29189408	29189408	C	T	SNP	OPRD1	ENST00000234961	human	ensembl	74_37	+1	known	silent	c.732	p.R244	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Neuropept_B/W_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Delta_opi_rcpt,prints_Opioid_rcpt,prints_Neuropept_B/W_rcpt,prints_Somatstn_rcpt,prints_NPY_rcpt	-	no_errors	OPRD1	HGNC	ENSG00000116329				42	0	0	36	7	16.2791
EPB41	0	genome.wustl.edu	37	1	29314014	29314014	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	29314014	29314014	G	A	SNP	EPB41	ENST00000343067	human	ensembl	74_37	+1	known	missense	c.65	p.G22D	0.083	pirsf_Band_41_protein	pirsf_Band_41_protein,pfam_Band_4.1_C,pfam_SAB_dom,pfam_FERM_PH-like_C,pfam_FERM_N,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like,pfscan_FERM_domain	-	no_errors	EPB41	HGNC	ENSG00000159023				154	0	0	138	8	5.47945
SRSF4	0	genome.wustl.edu	37	1	29475243	29475243	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	29475243	29475243	C	T	SNP	SRSF4	ENST00000373795	human	ensembl	74_37	-1	known	silent	c.1164	p.A388	0.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	SRSF4	HGNC	ENSG00000116350				84	0	0	108	14	11.4754
MECR	0	genome.wustl.edu	37	1	29522739	29522739	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	29522739	29522739	T	C	SNP	MECR	ENST00000263702	human	ensembl	74_37	-1	known	missense	c.862	p.M288V	1.000	pfam_ADH_C,smart_PKS_ER	pfam_ADH_C,pfam_ADH_GroES-like,superfamily_GroES-like,smart_PKS_ER	-	no_errors	MECR	HGNC	ENSG00000116353				33	0	0	45	5	10
MECR	0	genome.wustl.edu	37	1	29542532	29542532	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	29542532	29542532	C	A	SNP	MECR	ENST00000263702	human	ensembl	74_37	-1	known	missense	c.391	p.A131S	0.993	pfam_ADH_GroES-like,superfamily_GroES-like,smart_PKS_ER	pfam_ADH_C,pfam_ADH_GroES-like,superfamily_GroES-like,smart_PKS_ER	-	no_errors	MECR	HGNC	ENSG00000116353				86	0	0	66	4	5.71429
PTPRU	0	genome.wustl.edu	37	1	29585826	29585826	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	29585826	29585826	T	C	SNP	PTPRU	ENST00000345512	human	ensembl	74_37	+1	known	silent	c.531	p.D177	1.000	pfam_MAM_dom,superfamily_ConA-like_lec_gl_sf,smart_MAM_dom,pfscan_MAM_dom,prints_MAM_dom	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRU	HGNC	ENSG00000060656				31	0	0	31	3	8.82353
PTPRU	0	genome.wustl.edu	37	1	29611288	29611288	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	29611288	29611288	C	A	SNP	PTPRU	ENST00000345512	human	ensembl	74_37	+1	known	nonsense	c.2225	p.S742*	1.000	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRU	HGNC	ENSG00000060656				66	0	0	71	15	17.4419
PTPRU	0	genome.wustl.edu	37	1	29618439	29618439	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	29618439	29618439	A	T	SNP	PTPRU	ENST00000345512	human	ensembl	74_37	+1	known	missense	c.2407	p.M803L	1.000	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRU	HGNC	ENSG00000060656				32	0	0	33	4	10.8108
PUM1	0	genome.wustl.edu	37	1	31479866	31479866	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	31479866	31479866	C	T	SNP	PUM1	ENST00000426105	human	ensembl	74_37	-1	known	nonsense	c.516	p.W172*	1.000	NULL	pfam_Pumilio_RNA-bd_rpt,superfamily_ARM-type_fold,smart_Pumilio_RNA-bd_rpt,pfscan_Pumilio_RNA-bd_rpt	-	no_errors	PUM1	HGNC	ENSG00000134644				411	0	0	272	15	5.22648
SERINC2	0	genome.wustl.edu	37	1	31907103	31907103	+	RNA	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	31907103	31907103	G	A	SNP	SERINC2	ENST00000491976	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	SERINC2	HGNC	ENSG00000168528				27	0	0	32	5	13.5135
BAI2	0	genome.wustl.edu	37	1	32222059	32222059	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	32222059	32222059	G	A	SNP	BAI2	ENST00000373658	human	ensembl	74_37	-1	known	missense	c.379	p.R127W	0.989	NULL	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_Thrombospondin_1_rpt,pfam_GPS_dom,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_Thrombospondin_1_rpt,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_brain-spec_angio_inhib,prints_GPCR_2_secretin-like	-	no_errors	BAI2	HGNC	ENSG00000121753				18	0	0	25	4	13.7931
KHDRBS1	0	genome.wustl.edu	37	1	32503449	32503449	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	32503449	32503449	G	T	SNP	KHDRBS1	ENST00000327300	human	ensembl	74_37	+1	known	nonsense	c.919	p.G307*	1.000	NULL	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	KHDRBS1	HGNC	ENSG00000121774				169	0	0	155	20	11.4286
KPNA6	0	genome.wustl.edu	37	1	32635510	32635510	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	32635510	32635510	A	G	SNP	KPNA6	ENST00000545542	human	ensembl	74_37	+1	known	silent	c.1287	p.K429	0.999	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo	pfam_Armadillo,pfam_Importin-a_IBB,pfam_HEAT,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo,pfscan_Importin-a_IBB	-	no_errors	KPNA6	HGNC	ENSG00000025800				171	0	0	151	17	10.119
EIF3I	0	genome.wustl.edu	37	1	32696575	32696575	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	32696575	32696575	A	G	SNP	EIF3I	ENST00000373586	human	ensembl	74_37	+1	known	missense	c.851	p.H284R	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EIF3I	HGNC	ENSG00000084623				114	0	0	110	11	9.09091
TSSK3	0	genome.wustl.edu	37	1	32829415	32829415	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	32829415	32829415	T	C	SNP	TSSK3	ENST00000373534	human	ensembl	74_37	+1	known	missense	c.365	p.I122T	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TSSK3	HGNC	ENSG00000162526				87	0	0	65	23	26.1364
RBBP4	0	genome.wustl.edu	37	1	33134616	33134616	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	33134616	33134616	A	G	SNP	RBBP4	ENST00000373493	human	ensembl	74_37	+1	known	missense	c.644	p.K215R	1.000	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_Histone-bd_RBBP4_N,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	RBBP4	HGNC	ENSG00000162521				90	0	0	71	11	13.4146
ZNF362	0	genome.wustl.edu	37	1	33745781	33745781	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	33745781	33745781	G	A	SNP	ZNF362	ENST00000373428	human	ensembl	74_37	+1	known	missense	c.406	p.A136T	0.050	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF362	HGNC	ENSG00000160094				70	0	0	56	20	26.3158
ARHGEF16	0	genome.wustl.edu	37	1	3394499	3394499	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	3394499	3394499	G	A	SNP	ARHGEF16	ENST00000378378	human	ensembl	74_37	+1	known	missense	c.1534	p.E512K	0.997	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,pfam_SH3_domain,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ARHGEF16	HGNC	ENSG00000130762				77	0	0	59	6	9.23077
ARHGEF16	0	genome.wustl.edu	37	1	3395096	3395096	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	3395096	3395096	C	T	SNP	ARHGEF16	ENST00000378378	human	ensembl	74_37	+1	known	silent	c.1734	p.S578	0.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,pfam_SH3_domain,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ARHGEF16	HGNC	ENSG00000130762				43	0	0	45	6	11.7647
ARHGEF16	0	genome.wustl.edu	37	1	3397074	3397074	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	3397074	3397074	C	T	SNP	ARHGEF16	ENST00000378378	human	ensembl	74_37	+1	known	missense	c.2053	p.R685C	0.373	superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_DH-domain,pfam_SH3_domain,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ARHGEF16	HGNC	ENSG00000130762				43	0	0	51	3	5.55556
CSMD2	0	genome.wustl.edu	37	1	34015866	34015866	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	34015866	34015866	C	T	SNP	CSMD2	ENST00000373381	human	ensembl	74_37	-1	known	missense	c.8828	p.S2943N	1.000	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD2	HGNC	ENSG00000121904				72	0	0	61	10	14.0845
CSMD2	0	genome.wustl.edu	37	1	34035106	34035106	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	34035106	34035106	G	A	SNP	CSMD2	ENST00000373381	human	ensembl	74_37	-1	known	missense	c.7999	p.R2667C	1.000	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD2	HGNC	ENSG00000121904				48	0	0	35	9	20.4545
CSMD2	0	genome.wustl.edu	37	1	34071528	34071528	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	34071528	34071528	T	C	SNP	CSMD2	ENST00000241312	human	ensembl	74_37	-1	known	missense	c.6284	p.E2095G	0.108	NULL	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD2	HGNC	ENSG00000121904				67	0	0	54	4	6.89655
MEGF6	0	genome.wustl.edu	37	1	3417801	3417801	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	3417801	3417801	C	T	SNP	MEGF6	ENST00000356575	human	ensembl	74_37	-1	known	missense	c.2386	p.D796N	0.664	smart_EG-like_dom,smart_EGF_laminin	pfam_EGF_laminin,pfam_EGF-like_Ca-bd_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_EGF_laminin,pfscan_EG-like_dom,pfscan_EMI_domain	-	no_errors	MEGF6	HGNC	ENSG00000162591				18	0	0	26	4	13.3333
CSMD2	0	genome.wustl.edu	37	1	34180353	34180353	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	34180353	34180353	C	A	SNP	CSMD2	ENST00000373381	human	ensembl	74_37	-1	known	missense	c.3240	p.E1080D	0.997	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD2	HGNC	ENSG00000121904				47	0	0	47	4	7.84314
C1orf94	0	genome.wustl.edu	37	1	34667751	34667751	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	34667751	34667751	A	G	SNP	C1orf94	ENST00000488417	human	ensembl	74_37	+1	known	missense	c.1337	p.H446R	1.000	NULL	NULL	-	no_errors	C1orf94	HGNC	ENSG00000142698				71	0	0	82	9	9.89011
GJB3	0	genome.wustl.edu	37	1	35250919	35250919	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	35250919	35250919	A	G	SNP	GJB3	ENST00000373362	human	ensembl	74_37	+1	known	missense	c.556	p.I186V	0.810	pfam_Connexin_CCC,prints_Connexin	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin,prints_Connexin31	-	no_errors	GJB3	HGNC	ENSG00000188910				71	0	0	73	10	12.0482
DLGAP3	0	genome.wustl.edu	37	1	35332721	35332721	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	35332721	35332721	G	A	SNP	DLGAP3	ENST00000235180	human	ensembl	74_37	-1	known	silent	c.2649	p.I883	0.909	pfam_GKAP	pfam_GKAP	-	no_errors	DLGAP3	HGNC	ENSG00000116544				106	0	0	94	28	22.9508
DLGAP3	0	genome.wustl.edu	37	1	35370394	35370394	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	35370394	35370394	C	T	SNP	DLGAP3	ENST00000235180	human	ensembl	74_37	-1	known	silent	c.591	p.G197	1.000	NULL	pfam_GKAP	-	no_errors	DLGAP3	HGNC	ENSG00000116544				44	0	0	39	12	23.5294
WRAP73	0	genome.wustl.edu	37	1	3552529	3552529	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	3552529	3552529	T	C	SNP	WRAP73	ENST00000270708	human	ensembl	74_37	-1	known	silent	c.582	p.A194	0.010	smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	WRAP73	HGNC	ENSG00000116213				73	0	0	63	4	5.97015
CLSPN	0	genome.wustl.edu	37	1	36203686	36203686	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	36203686	36203686	T	C	SNP	CLSPN	ENST00000318121	human	ensembl	74_37	-1	known	missense	c.3571	p.K1191E	1.000	NULL	NULL	-	no_errors	CLSPN	HGNC	ENSG00000092853				87	0	0	74	9	10.8434
ADPRHL2	0	genome.wustl.edu	37	1	36557670	36557670	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	36557670	36557670	G	A	SNP	ADPRHL2	ENST00000373178	human	ensembl	74_37	+1	known	missense	c.676	p.A226T	1.000	pfam_Ribosyl_crysJ1,superfamily_Ribosyl_crysJ1	pfam_Ribosyl_crysJ1,superfamily_Ribosyl_crysJ1	-	no_errors	ADPRHL2	HGNC	ENSG00000116863				42	0	0	52	3	5.45455
TRAPPC3	0	genome.wustl.edu	37	1	36605713	36605713	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	36605713	36605713	C	T	SNP	TRAPPC3	ENST00000373166	human	ensembl	74_37	-1	known	missense	c.97	p.D33N	1.000	pfam_TRAPP_component,superfamily_NO_sig/Golgi_transp_ligand-bd,pirsf_TRAPP_I_complex_Bet3	pfam_TRAPP_component,superfamily_NO_sig/Golgi_transp_ligand-bd,pirsf_TRAPP_I_complex_Bet3	-	no_errors	TRAPPC3	HGNC	ENSG00000054116				46	0	0	40	3	6.97674
MAP7D1	0	genome.wustl.edu	37	1	36645561	36645561	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	36645561	36645561	G	A	SNP	MAP7D1	ENST00000373151	human	ensembl	74_37	+1	known	missense	c.2408	p.G803E	1.000	NULL	pfam_MAP7	-	no_errors	MAP7D1	HGNC	ENSG00000116871				44	0	0	37	4	9.7561
CCDC27	0	genome.wustl.edu	37	1	3669074	3669074	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	3669074	3669074	C	A	SNP	CCDC27	ENST00000294600	human	ensembl	74_37	+1	known	missense	c.29	p.P10H	0.000	NULL	superfamily_Prefoldin	-	no_errors	CCDC27	HGNC	ENSG00000162592				52	0	0	50	4	7.40741
THRAP3	0	genome.wustl.edu	37	1	36755361	36755361	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	36755361	36755361	G	A	SNP	THRAP3	ENST00000354618	human	ensembl	74_37	+1	known	missense	c.1741	p.A581T	1.000	NULL	NULL	-	no_errors	THRAP3	HGNC	ENSG00000054118				51	0	0	33	13	28.2609
THRAP3	0	genome.wustl.edu	37	1	36769439	36769439	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	36769439	36769439	C	T	SNP	THRAP3	ENST00000354618	human	ensembl	74_37	+1	known	missense	c.2689	p.R897W	1.000	NULL	NULL	-	no_errors	THRAP3	HGNC	ENSG00000054118				141	0	0	104	12	10.3448
SH3D21	0	genome.wustl.edu	37	1	36785374	36785374	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	36785374	36785374	C	T	SNP	SH3D21	ENST00000453908	human	ensembl	74_37	+1	known	silent	c.1110	p.N370	0.002	NULL	pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain,prints_p67phox,prints_Spectrin_alpha_SH3	-	no_errors	SH3D21	HGNC	ENSG00000214193				18	0	0	22	4	15.3846
MEAF6	0	genome.wustl.edu	37	1	37975066	37975066	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	37975066	37975066	G	A	SNP	MEAF6	ENST00000373075	human	ensembl	74_37	-1	known	missense	c.284	p.T95I	0.985	pfam_Hist_AcTrfase_NuA4_cplx	pfam_Hist_AcTrfase_NuA4_cplx	-	no_errors	MEAF6	HGNC	ENSG00000163875				283	0	0	219	23	9.50413
SNIP1	0	genome.wustl.edu	37	1	38006093	38006093	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	38006093	38006093	A	G	SNP	SNIP1	ENST00000296215	human	ensembl	74_37	-1	known	silent	c.591	p.G197	0.000	NULL	pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	SNIP1	HGNC	ENSG00000163877				137	0	0	117	10	7.87402
DNALI1	0	genome.wustl.edu	37	1	38023220	38023220	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	38023220	38023220	T	C	SNP	DNALI1	ENST00000296218	human	ensembl	74_37	+1	known	missense	c.164	p.V55A	1.000	NULL	pfam_Axonemal_dynein_light_chain	-	no_errors	DNALI1	HGNC	ENSG00000163879				116	0	0	112	11	8.94309
GNL2	0	genome.wustl.edu	37	1	38048476	38048476	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	38048476	38048476	C	T	SNP	GNL2	ENST00000373062	human	ensembl	74_37	-1	known	missense	c.698	p.R233H	1.000	superfamily_P-loop_NTPase	pfam_NOG2_N_dom,pfam_GTP_binding_domain,superfamily_P-loop_NTPase,prints_GTP_binding_domain	-	no_errors	GNL2	HGNC	ENSG00000134697				97	0	0	76	7	8.43373
GNL2	0	genome.wustl.edu	37	1	38053053	38053053	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	38053053	38053053	G	A	SNP	GNL2	ENST00000373062	human	ensembl	74_37	-1	known	missense	c.428	p.T143I	1.000	pfam_NOG2_N_dom	pfam_NOG2_N_dom,pfam_GTP_binding_domain,superfamily_P-loop_NTPase,prints_GTP_binding_domain	-	no_errors	GNL2	HGNC	ENSG00000134697				80	0	0	43	11	20.3704
C1orf174	0	genome.wustl.edu	37	1	3806483	3806483	+	RNA	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	3806483	3806483	T	C	SNP	C1orf174	ENST00000486765	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	C1orf174	HGNC	ENSG00000198912				110	0	0	79	5	5.95238
MANEAL	0	genome.wustl.edu	37	1	38265387	38265387	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	38265387	38265387	C	T	SNP	MANEAL	ENST00000373045	human	ensembl	74_37	+1	known	missense	c.886	p.P296S	0.945	NULL	NULL	-	no_errors	MANEAL	HGNC	ENSG00000185090				107	0	0	98	17	14.7826
FHL3	0	genome.wustl.edu	37	1	38463130	38463130	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	38463130	38463130	C	T	SNP	FHL3	ENST00000373016	human	ensembl	74_37	-1	known	missense	c.790	p.V264I	0.986	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	FHL3	HGNC	ENSG00000183386				55	0	0	55	14	20.2899
GJA9	0	genome.wustl.edu	37	1	39341489	39341489	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	39341489	39341489	G	A	SNP	GJA9	ENST00000357771	human	ensembl	74_37	-1	known	silent	c.282	p.G94	1.000	pfam_Connexin_N,prints_Connexin	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin	-	no_errors	GJA9	HGNC	ENSG00000131233				218	0	0	197	18	8.37209
MACF1	0	genome.wustl.edu	37	1	39765892	39765892	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	39765892	39765892	A	T	SNP	MACF1	ENST00000317713	human	ensembl	74_37	+1	known	missense	c.2507	p.E836V	1.000	NULL	pfam_Spectrin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_dom,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	MACF1	HGNC	ENSG00000127603				131	0	0	118	12	9.23077
MACF1	0	genome.wustl.edu	37	1	39796951	39796951	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	39796951	39796951	G	A	SNP	MACF1	ENST00000567887	human	ensembl	74_37	+1	putative	missense	c.4802	p.G1601D	1.000	superfamily_RNaseH-like_dom,smart_Plectin_repeat	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_RNaseH-like_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_dom,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	MACF1	HGNC	ENSG00000127603				51	0	0	42	4	8.69565
MACF1	0	genome.wustl.edu	37	1	39844182	39844182	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	39844182	39844182	C	T	SNP	MACF1	ENST00000317713	human	ensembl	74_37	+1	known	silent	c.7077	p.Y2359	1.000	smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_dom,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	MACF1	HGNC	ENSG00000127603				91	0	0	64	12	15.7895
MACF1	0	genome.wustl.edu	37	1	39854290	39854290	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	39854290	39854290	C	T	SNP	MACF1	ENST00000317713	human	ensembl	74_37	+1	known	missense	c.9590	p.T3197I	0.988	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_dom,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	MACF1	HGNC	ENSG00000127603				81	0	0	69	6	8
KIAA0754	0	genome.wustl.edu	37	1	39879803	39879803	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	39879803	39879803	A	G	SNP	KIAA0754	ENST00000530275	human	ensembl	74_37	+1	known	missense	c.3458	p.N1153S	0.000	NULL	NULL	-	no_errors	KIAA0754	HGNC	ENSG00000255103				14	0	0	15	5	25
MYCL	0	genome.wustl.edu	37	1	40363565	40363565	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	40363565	40363565	G	A	SNP	MYCL	ENST00000372816	human	ensembl	74_37	-1	known	nonsense	c.574	p.R192*	1.000	pfam_Tscrpt_reg_Myc_N	pfam_Tscrpt_reg_Myc_N,pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom,prints_Tscrpt_reg_Myc	-	no_errors	MYCL	HGNC	ENSG00000116990				108	0	0	92	11	10.6796
CAP1	0	genome.wustl.edu	37	1	40535427	40535427	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	40535427	40535427	C	A	SNP	CAP1	ENST00000372792	human	ensembl	74_37	+1	known	missense	c.874	p.P292T	0.999	pfam_Adenylate_cyclase-assoc_CAP_N	pfam_Adenylate_cyclase-assoc_CAP_N,pfam_Adenylate_cyclase-assoc_CAP_C,superfamily_Adenylate_cyclase-assoc_CAP_N,superfamily_Adenylate_cyclase-assoc_CAP_C,smart_CARP_motif	-	no_errors	CAP1	HGNC	ENSG00000131236				195	0	0	156	19	10.8571
RLF	0	genome.wustl.edu	37	1	40703531	40703531	+	Silent	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	40703531	40703531	A	C	SNP	RLF	ENST00000372771	human	ensembl	74_37	+1	known	silent	c.3157	p.R1053	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	RLF	HGNC	ENSG00000117000				107	0	0	68	7	9.33333
ZMPSTE24	0	genome.wustl.edu	37	1	40747087	40747087	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	40747087	40747087	A	T	SNP	ZMPSTE24	ENST00000372759	human	ensembl	74_37	+1	known	missense	c.842	p.D281V	1.000	pfam_Peptidase_M48	pfam_Peptidase_M48	-	no_errors	ZMPSTE24	HGNC	ENSG00000084073				133	0	0	94	14	12.963
SMAP2	0	genome.wustl.edu	37	1	40879909	40879909	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	40879909	40879909	C	A	SNP	SMAP2	ENST00000372718	human	ensembl	74_37	+1	known	missense	c.568	p.L190I	1.000	NULL	pfam_ArfGAP,smart_ArfGAP,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	SMAP2	HGNC	ENSG00000084070				73	0	0	51	5	8.92857
SMAP2	0	genome.wustl.edu	37	1	40881883	40881883	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	40881883	40881883	C	T	SNP	SMAP2	ENST00000372718	human	ensembl	74_37	+1	known	silent	c.717	p.G239	0.972	NULL	pfam_ArfGAP,smart_ArfGAP,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	SMAP2	HGNC	ENSG00000084070				150	0	0	161	23	12.5
EXO5	0	genome.wustl.edu	37	1	40981037	40981037	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	40981037	40981037	T	C	SNP	EXO5	ENST00000296380	human	ensembl	74_37	+1	known	missense	c.821	p.L274P	0.975	pfam_EXOV	pfam_EXOV	-	no_errors	EXO5	HGNC	ENSG00000164002				183	0	0	148	16	9.7561
KCNQ4	0	genome.wustl.edu	37	1	41250028	41250028	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	41250028	41250028	A	G	SNP	KCNQ4	ENST00000347132	human	ensembl	74_37	+1	known	missense	c.263	p.Y88C	1.000	NULL	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ4	HGNC	ENSG00000117013				44	0	0	37	8	17.7778
HIVEP3	0	genome.wustl.edu	37	1	41990484	41990484	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	41990484	41990484	G	A	SNP	HIVEP3	ENST00000247584	human	ensembl	74_37	-1	known	silent	c.5305	p.L1769	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP3	HGNC	ENSG00000127124				112	0	0	89	19	17.5926
HIVEP3	0	genome.wustl.edu	37	1	42046233	42046233	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	42046233	42046233	T	C	SNP	HIVEP3	ENST00000247584	human	ensembl	74_37	-1	known	silent	c.4236	p.S1412	0.912	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP3	HGNC	ENSG00000127124				118	0	0	101	10	9.00901
HIVEP3	0	genome.wustl.edu	37	1	42046988	42046988	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	42046988	42046988	C	A	SNP	HIVEP3	ENST00000247584	human	ensembl	74_37	-1	known	nonsense	c.3481	p.E1161*	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP3	HGNC	ENSG00000127124				145	0	0	142	15	9.55414
HIVEP3	0	genome.wustl.edu	37	1	42048796	42048796	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	42048796	42048796	C	T	SNP	HIVEP3	ENST00000247584	human	ensembl	74_37	-1	known	missense	c.1673	p.R558Q	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP3	HGNC	ENSG00000127124				70	0	0	49	19	27.9412
FOXJ3	0	genome.wustl.edu	37	1	42664883	42664883	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	42664883	42664883	C	T	SNP	FOXJ3	ENST00000361346	human	ensembl	74_37	-1	known	missense	c.649	p.D217N	1.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXJ3	HGNC	ENSG00000198815				170	0	0	143	8	5.29801
PPIH	0	genome.wustl.edu	37	1	43125024	43125024	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	43125024	43125024	T	C	SNP	PPIH	ENST00000372550	human	ensembl	74_37	+1	known	silent	c.9	p.A3	0.025	pfscan_Cyclophilin-like_PPIase_dom	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	PPIH	HGNC	ENSG00000171960				107	0	0	97	12	11.0092
LEPRE1	0	genome.wustl.edu	37	1	43212614	43212614	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	43212614	43212614	T	C	SNP	LEPRE1	ENST00000236040	human	ensembl	74_37	-1	known	missense	c.2384	p.N795S	0.000	NULL	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	LEPRE1	HGNC	ENSG00000117385				57	0	0	57	6	9.52381
LEPRE1	0	genome.wustl.edu	37	1	43213016	43213016	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	43213016	43213016	A	G	SNP	LEPRE1	ENST00000236040	human	ensembl	74_37	-1	known	missense	c.1982	p.V661A	1.000	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	LEPRE1	HGNC	ENSG00000117385				63	0	0	65	6	8.4507
SLC2A1	0	genome.wustl.edu	37	1	43396858	43396858	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	43396858	43396858	T	C	SNP	SLC2A1	ENST00000426263	human	ensembl	74_37	-1	known	missense	c.134	p.N45S	1.000	pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Glu_transpt_1,tigrfam_Sugar/inositol_transpt	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Sugar/inositol_transpt,prints_Glu_transpt_1,tigrfam_Sugar/inositol_transpt	-	no_errors	SLC2A1	HGNC	ENSG00000117394				45	0	0	39	6	13.3333
TMEM125	0	genome.wustl.edu	37	1	43738912	43738912	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	43738912	43738912	C	T	SNP	TMEM125	ENST00000432792	human	ensembl	74_37	+1	known	silent	c.519	p.S173	0.004	NULL	NULL	-	no_errors	TMEM125	HGNC	ENSG00000179178				43	0	0	29	6	17.1429
TIE1	0	genome.wustl.edu	37	1	43777979	43777979	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	43777979	43777979	C	A	SNP	TIE1	ENST00000372476	human	ensembl	74_37	+1	known	missense	c.1634	p.P545H	0.992	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_EG-like_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	TIE1	HGNC	ENSG00000066056				84	0	0	63	6	8.69565
SZT2	0	genome.wustl.edu	37	1	43903371	43903371	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	43903371	43903371	G	A	SNP	SZT2	ENST00000562955	human	ensembl	74_37	+1	known	silent	c.6225	p.S2075	0.997	NULL	NULL	-	no_errors	SZT2	HGNC	ENSG00000198198				55	0	0	49	10	16.9492
SZT2	0	genome.wustl.edu	37	1	43908489	43908489	+	Splice_Site	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	43908489	43908489	G	T	SNP	SZT2	ENST00000562955	human	ensembl	74_37	+1	known	splice_site	c.7981-1	e58-1	1.000	-	-	-	no_errors	SZT2	HGNC	ENSG00000198198				115	0	0	109	15	12.0968
PTPRF	0	genome.wustl.edu	37	1	44056913	44056913	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	44056913	44056913	G	A	SNP	PTPRF	ENST00000359947	human	ensembl	74_37	+1	known	missense	c.1220	p.R407H	1.000	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRF	HGNC	ENSG00000142949				13	0	0	13	5	27.7778
PTPRF	0	genome.wustl.edu	37	1	44063488	44063488	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	44063488	44063488	T	C	SNP	PTPRF	ENST00000359947	human	ensembl	74_37	+1	known	missense	c.1883	p.V628A	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRF	HGNC	ENSG00000142949				19	0	0	16	3	15.7895
ATP6V0B	0	genome.wustl.edu	37	1	44442498	44442498	+	Splice_Site	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	44442498	44442498	T	C	SNP	ATP6V0B	ENST00000472174	human	ensembl	74_37	+1	known	splice_site	c.400+2	e6+2	1.000	-	-	-	no_errors	ATP6V0B	HGNC	ENSG00000117410				47	0	0	45	3	6.25
ATP6V0B	0	genome.wustl.edu	37	1	44442793	44442793	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	44442793	44442793	G	A	SNP	ATP6V0B	ENST00000472174	human	ensembl	74_37	+1	known	missense	c.496	p.D166N	1.000	pfam_ATPase_proteolipid_c_like_dom,superfamily_ATPase_proteolipid_c_like_dom,prints_ATPase_proteolipid_csu	pfam_ATPase_proteolipid_c_like_dom,superfamily_ATPase_proteolipid_c_like_dom,prints_ATPase_proteolipid_csu	-	no_errors	ATP6V0B	HGNC	ENSG00000117410				102	0	0	85	22	20.5607
CCDC24	0	genome.wustl.edu	37	1	44458260	44458260	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	44458260	44458260	G	T	SNP	CCDC24	ENST00000372318	human	ensembl	74_37	+1	known	missense	c.368	p.R123M	0.137	NULL	NULL	-	no_errors	CCDC24	HGNC	ENSG00000159214				41	0	0	45	5	10
SLC6A9	0	genome.wustl.edu	37	1	44474143	44474143	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	44474143	44474143	C	T	SNP	SLC6A9	ENST00000360584	human	ensembl	74_37	-1	known	missense	c.691	p.G231S	0.426	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_glycine_GLY1	-	no_errors	SLC6A9	HGNC	ENSG00000196517				85	0	0	81	8	8.98876
HECTD3	0	genome.wustl.edu	37	1	45474846	45474846	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	45474846	45474846	T	A	SNP	HECTD3	ENST00000372172	human	ensembl	74_37	-1	known	missense	c.1042	p.I348F	0.141	pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like	pfam_HECT,pfam_APC_su10/DOC_dom,superfamily_HECT,superfamily_Galactose-bd-like,smart_HECT,pfscan_HECT	-	no_errors	HECTD3	HGNC	ENSG00000126107				41	0	0	29	6	17.1429
UROD	0	genome.wustl.edu	37	1	45479751	45479751	+	RNA	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	45479751	45479751	T	C	SNP	UROD	ENST00000460906	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.934	-	-	-	no_errors	UROD	HGNC	ENSG00000126088				98	0	0	88	16	15.3846
MUTYH	0	genome.wustl.edu	37	1	45799172	45799172	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	45799172	45799172	G	A	SNP	MUTYH	ENST00000450313	human	ensembl	74_37	-1	known	silent	c.261	p.F87	1.000	superfamily_DNA_glycosylase	pfam_HhH-GPD_domain,superfamily_DNA_glycosylase,superfamily_NUDIX_hydrolase_dom-like,smart_HhH-GPD_domain,smart_Endouclease3_FeS-loop_motif	-	no_errors	MUTYH	HGNC	ENSG00000132781				74	0	0	85	7	7.6087
TOE1	0	genome.wustl.edu	37	1	45808899	45808899	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	45808899	45808899	C	A	SNP	TOE1	ENST00000372090	human	ensembl	74_37	+1	known	missense	c.1058	p.P353Q	0.000	pfam_RNase_CAF1	pfam_RNase_CAF1,pfam_Znf_CCCH,superfamily_RNaseH-like_dom	-	no_errors	TOE1	HGNC	ENSG00000132773				158	0	0	115	12	9.44882
MAST2	0	genome.wustl.edu	37	1	46496749	46496749	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	46496749	46496749	C	T	SNP	MAST2	ENST00000361297	human	ensembl	74_37	+1	known	nonsense	c.2779	p.R927*	1.000	NULL	pfam_MA_Ser/Thr_Kinase_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,superfamily_Kinase-like_dom,superfamily_MAST_pre-PK_dom,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PDZ,pfscan_PDZ,pfscan_Prot_kinase_dom	-	no_errors	MAST2	HGNC	ENSG00000086015				23	0	0	26	4	13.3333
MAST2	0	genome.wustl.edu	37	1	46497992	46497992	+	Silent	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	46497992	46497992	T	G	SNP	MAST2	ENST00000361297	human	ensembl	74_37	+1	known	silent	c.3330	p.A1110	1.000	superfamily_PDZ,pfscan_PDZ	pfam_MA_Ser/Thr_Kinase_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,superfamily_Kinase-like_dom,superfamily_MAST_pre-PK_dom,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PDZ,pfscan_PDZ,pfscan_Prot_kinase_dom	-	no_errors	MAST2	HGNC	ENSG00000086015				63	0	0	63	9	12.5
POMGNT1	0	genome.wustl.edu	37	1	46658844	46658844	+	Splice_Site	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	46658844	46658844	A	G	SNP	POMGNT1	ENST00000371986	human	ensembl	74_37	-1	known	splice_site	c.1152+2	e12+2	1.000	-	-	-	no_errors	POMGNT1	HGNC	ENSG00000085998				52	0	0	31	8	20.5128
RAD54L	0	genome.wustl.edu	37	1	46726527	46726527	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	46726527	46726527	C	T	SNP	RAD54L	ENST00000371975	human	ensembl	74_37	+1	known	silent	c.606	p.R202	0.997	pfam_SNF2_N,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_SNF2_N,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,pfam_Rad54_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	RAD54L	HGNC	ENSG00000085999				76	0	0	65	5	7.14286
RAD54L	0	genome.wustl.edu	37	1	46739122	46739122	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	46739122	46739122	G	A	SNP	RAD54L	ENST00000371975	human	ensembl	74_37	+1	known	missense	c.1471	p.E491K	1.000	pfam_HDA_complex_subunit-2/3,superfamily_P-loop_NTPase	pfam_SNF2_N,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,pfam_Rad54_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	RAD54L	HGNC	ENSG00000085999				109	0	0	109	32	22.695
LRRC41	0	genome.wustl.edu	37	1	46744536	46744536	+	RNA	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	46744536	46744536	A	G	SNP	LRRC41	ENST00000472710	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.996	-	-	-	no_errors	LRRC41	HGNC	ENSG00000132128				59	0	0	48	4	7.69231
FAAH	0	genome.wustl.edu	37	1	46876500	46876500	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	46876500	46876500	A	G	SNP	FAAH	ENST00000243167	human	ensembl	74_37	+1	known	silent	c.1290	p.S430	0.064	pfam_Amidase,superfamily_Amidase_dom,pirsf_Amidase_fun	pfam_Amidase,superfamily_Amidase_dom,pirsf_Amidase_fun	-	no_errors	FAAH	HGNC	ENSG00000117480				68	0	0	62	7	10.1449
ATPAF1	0	genome.wustl.edu	37	1	47101525	47101525	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	47101525	47101525	T	A	SNP	ATPAF1	ENST00000576409	human	ensembl	74_37	-1	known	missense	c.979	p.M327L	1.000	pfam_ATP11	pfam_ATP11	-	no_errors	ATPAF1	HGNC	ENSG00000123472				315	0	0	237	20	7.7821
ATPAF1	0	genome.wustl.edu	37	1	47123837	47123837	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	47123837	47123837	C	T	SNP	ATPAF1	ENST00000576409	human	ensembl	74_37	-1	known	missense	c.520	p.E174K	1.000	pfam_ATP11	pfam_ATP11	-	no_errors	ATPAF1	HGNC	ENSG00000123472				76	0	0	46	9	16.3636
EFCAB14	0	genome.wustl.edu	37	1	47183713	47183713	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	47183713	47183713	T	C	SNP	EFCAB14	ENST00000371933	human	ensembl	74_37	-1	known	missense	c.47	p.D16G	1.000	NULL	pfscan_EF_hand_dom	-	no_errors	EFCAB14	HGNC	ENSG00000159658				105	0	0	97	7	6.73077
CYP4A11	0	genome.wustl.edu	37	1	47400795	47400795	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	47400795	47400795	C	T	SNP	CYP4A11	ENST00000371904	human	ensembl	74_37	-1	known	missense	c.667	p.D223N	0.245	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-II,prints_Cyt_P450_E_grp-IV	-	no_errors	CYP4A11	HGNC	ENSG00000187048				85	0	0	94	7	6.93069
CYP4X1	0	genome.wustl.edu	37	1	47515714	47515714	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	47515714	47515714	A	G	SNP	CYP4X1	ENST00000371901	human	ensembl	74_37	+1	known	silent	c.1398	p.V466	0.992	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II	-	no_errors	CYP4X1	HGNC	ENSG00000186377				181	0	0	166	15	8.28729
CYP4Z1	0	genome.wustl.edu	37	1	47564911	47564911	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	47564911	47564911	G	A	SNP	CYP4Z1	ENST00000334194	human	ensembl	74_37	+1	known	missense	c.1022	p.R341Q	1.000	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II	-	no_errors	CYP4Z1	HGNC	ENSG00000186160				57	0	0	43	5	10.4167
STIL	0	genome.wustl.edu	37	1	47716886	47716886	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	47716886	47716886	T	C	SNP	STIL	ENST00000371877	human	ensembl	74_37	-1	known	silent	c.3789	p.L1263	0.285	NULL	NULL	-	no_errors	STIL	HGNC	ENSG00000123473				162	0	0	123	15	10.8696
STIL	0	genome.wustl.edu	37	1	47717182	47717182	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	47717182	47717182	G	T	SNP	STIL	ENST00000371877	human	ensembl	74_37	-1	known	missense	c.3493	p.L1165I	0.000	NULL	NULL	-	no_errors	STIL	HGNC	ENSG00000123473				182	0	0	121	7	5.46875
CMPK1	0	genome.wustl.edu	37	1	47840875	47840875	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	47840875	47840875	G	A	SNP	CMPK1	ENST00000371871	human	ensembl	74_37	+1	known	missense	c.478	p.D160N	1.000	NULL	pfam_Adenylate_kin,superfamily_P-loop_NTPase,prints_Adenylate_kin	-	no_errors	CMPK1	HGNC	ENSG00000162368				232	0	0	131	14	9.65517
SLC5A9	0	genome.wustl.edu	37	1	48690420	48690420	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	48690420	48690420	A	T	SNP	SLC5A9	ENST00000236495	human	ensembl	74_37	+1	known	missense	c.187	p.T63S	1.000	pfscan_Na/solute_symporter	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A9	HGNC	ENSG00000117834				99	0	0	99	8	7.47664
SLC5A9	0	genome.wustl.edu	37	1	48703476	48703476	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	48703476	48703476	C	A	SNP	SLC5A9	ENST00000236495	human	ensembl	74_37	+1	known	missense	c.1493	p.A498D	0.999	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A9	HGNC	ENSG00000117834				51	0	0	42	8	16
FAF1	0	genome.wustl.edu	37	1	50956304	50956304	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	50956304	50956304	A	G	SNP	FAF1	ENST00000371778	human	ensembl	74_37	-1	known	missense	c.1609	p.F537L	1.000	NULL	pfam_UBX,superfamily_UBA-like,smart_UAS,smart_UBX,pfscan_UBX	-	no_errors	FAF1	HGNC	ENSG00000185104				219	0	0	131	7	5.07246
NRD1	0	genome.wustl.edu	37	1	52343945	52343945	+	Splice_Site	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	52343945	52343945	A	G	SNP	NRD1	ENST00000354831	human	ensembl	74_37	-1	known	splice_site	c.341+2	e1+2	1.000	-	-	-	no_errors	NRD1	HGNC	ENSG00000078618				46	0	0	46	6	11.5385
ORC1	0	genome.wustl.edu	37	1	52838930	52838930	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	52838930	52838930	T	C	SNP	ORC1	ENST00000371566	human	ensembl	74_37	-1	known	missense	c.2509	p.S837G	1.000	pfam_Cdc6_C_dom	pfam_BAH_dom,pfam_ATPase_AAA_core,pfam_Cdc6_C_dom,pfam_DUF2075,superfamily_P-loop_NTPase,smart_BAH_dom,smart_AAA+_ATPase,pfscan_BAH_dom	-	no_errors	ORC1	HGNC	ENSG00000085840				92	0	0	93	9	8.82353
PRPF38A	0	genome.wustl.edu	37	1	52881054	52881054	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	52881054	52881054	G	A	SNP	PRPF38A	ENST00000257181	human	ensembl	74_37	+1	known	missense	c.892	p.E298K	1.000	NULL	pfam_PRP38	-	no_errors	PRPF38A	HGNC	ENSG00000134748				44	0	0	26	6	18.75
GPX7	0	genome.wustl.edu	37	1	53072522	53072522	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	53072522	53072522	G	A	SNP	GPX7	ENST00000361314	human	ensembl	74_37	+1	known	missense	c.305	p.S102N	0.999	pfam_Glutathione_peroxidase,pfam_AhpC/TSA,superfamily_Thioredoxin-like_fold,pirsf_Glutathione_peroxidase,tigrfam_Glut_perox_Gpx7	pfam_Glutathione_peroxidase,pfam_AhpC/TSA,superfamily_Thioredoxin-like_fold,pirsf_Glutathione_peroxidase,prints_Glutathione_peroxidase,tigrfam_Glut_perox_Gpx7	-	no_errors	GPX7	HGNC	ENSG00000116157				104	0	0	107	13	10.8333
SELRC1	0	genome.wustl.edu	37	1	53153309	53153309	+	RNA	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	53153309	53153309	A	T	SNP	SELRC1	ENST00000486918	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.014	-	-	-	no_errors	SELRC1	HGNC	ENSG00000162377				12	0	0	17	2	10.5263
ZYG11B	0	genome.wustl.edu	37	1	53236726	53236726	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	53236726	53236726	G	A	SNP	ZYG11B	ENST00000294353	human	ensembl	74_37	+1	known	silent	c.231	p.R77	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	ZYG11B	HGNC	ENSG00000162378				196	0	0	152	13	7.87879
ZYG11B	0	genome.wustl.edu	37	1	53245640	53245640	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	53245640	53245640	A	G	SNP	ZYG11B	ENST00000294353	human	ensembl	74_37	+1	known	missense	c.1067	p.E356G	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	ZYG11B	HGNC	ENSG00000162378				152	0	0	102	8	7.27273
ZYG11B	0	genome.wustl.edu	37	1	53279576	53279576	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	53279576	53279576	A	G	SNP	ZYG11B	ENST00000294353	human	ensembl	74_37	+1	known	silent	c.1938	p.V646	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	ZYG11B	HGNC	ENSG00000162378				61	0	0	47	7	12.963
SCP2	0	genome.wustl.edu	37	1	53427303	53427303	+	Splice_Site	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	53427303	53427303	T	A	SNP	SCP2	ENST00000371514	human	ensembl	74_37	+1	known	splice_site	c.523+2	e6+2	1.000	-	-	-	no_errors	SCP2	HGNC	ENSG00000116171				79	0	0	59	5	7.8125
CPT2	0	genome.wustl.edu	37	1	53675839	53675839	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	53675839	53675839	A	T	SNP	CPT2	ENST00000371486	human	ensembl	74_37	+1	known	missense	c.493	p.T165S	1.000	pfam_Carn_acyl_trans	pfam_Carn_acyl_trans	-	no_errors	CPT2	HGNC	ENSG00000157184				83	0	0	79	12	13.1868
CPT2	0	genome.wustl.edu	37	1	53675956	53675956	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	53675956	53675956	G	A	SNP	CPT2	ENST00000371486	human	ensembl	74_37	+1	known	missense	c.610	p.A204T	1.000	pfam_Carn_acyl_trans	pfam_Carn_acyl_trans	-	no_errors	CPT2	HGNC	ENSG00000157184				102	0	0	99	7	6.60377
LRP8	0	genome.wustl.edu	37	1	53715086	53715086	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	53715086	53715086	T	C	SNP	LRP8	ENST00000306052	human	ensembl	74_37	-1	known	missense	c.2819	p.N940S	1.000	NULL	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EGF-like_Ca-bd_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP8	HGNC	ENSG00000157193				65	0	0	57	6	9.52381
YIPF1	0	genome.wustl.edu	37	1	54331937	54331937	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	54331937	54331937	C	T	SNP	YIPF1	ENST00000539954	human	ensembl	74_37	-1	known	missense	c.842	p.R281H	0.963	pfam_Yip1	pfam_Yip1,superfamily_Ribonuclease/ribotoxin	-	no_errors	YIPF1	HGNC	ENSG00000058799				75	0	0	56	13	18.8406
HSPB11	0	genome.wustl.edu	37	1	54387395	54387395	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	54387395	54387395	C	T	SNP	HSPB11	ENST00000194214	human	ensembl	74_37	-1	known	missense	c.364	p.A122T	0.997	pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like	pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like	-	no_errors	HSPB11	HGNC	ENSG00000081870				109	0	0	64	10	13.5135
HSPB11	0	genome.wustl.edu	37	1	54395786	54395786	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	54395786	54395786	A	G	SNP	HSPB11	ENST00000371378	human	ensembl	74_37	-1	known	missense	c.131	p.M44T	1.000	superfamily_Galactose-bd-like	superfamily_Galactose-bd-like	-	no_errors	HSPB11	HGNC	ENSG00000081870				113	0	0	89	7	7.29167
CYB5RL	0	genome.wustl.edu	37	1	54644859	54644859	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	54644859	54644859	C	T	SNP	CYB5RL	ENST00000419823	human	ensembl	74_37	-1	known	missense	c.707	p.R236H	0.384	pfam_OxRdtase_FAD/NAD-bd	pfam_OxRdtase_FAD-bd_dom,pfam_Oxidoreductase-like_N,pfam_OxRdtase_FAD/NAD-bd,superfamily_Riboflavin_synthase-like_b-brl,prints_NADH-Cyt_B5_reductase,prints_Phe_hydroxylase	-	no_errors	CYB5RL	HGNC	ENSG00000215883				33	0	0	19	5	20.8333
SSBP3	0	genome.wustl.edu	37	1	54692744	54692744	+	RNA	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	54692744	54692744	A	G	SNP	SSBP3	ENST00000326956	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SSBP3	HGNC	ENSG00000157216				140	0	0	123	9	6.81818
SSBP3	0	genome.wustl.edu	37	1	54867612	54867612	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	54867612	54867612	A	G	SNP	SSBP3	ENST00000371320	human	ensembl	74_37	-1	known	silent	c.198	p.F66	1.000	prints_SSDP_DNA-bd	smart_LisH_dimerisation,pfscan_LisH_dimerisation,prints_SSDP_DNA-bd	-	no_errors	SSBP3	HGNC	ENSG00000157216				100	0	0	58	5	7.93651
ACOT11	0	genome.wustl.edu	37	1	55074766	55074766	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	55074766	55074766	C	A	SNP	ACOT11	ENST00000343744	human	ensembl	74_37	+1	known	missense	c.1766	p.P589H	1.000	NULL	pfam_START_lipid-bd_dom,pfam_Thioestr_supf,smart_START_lipid-bd_dom,pfscan_START_lipid-bd_dom	-	no_errors	ACOT11	HGNC	ENSG00000162390				188	0	0	157	13	7.64706
USP24	0	genome.wustl.edu	37	1	55627910	55627910	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	55627910	55627910	C	G	SNP	USP24	ENST00000407756	human	ensembl	74_37	-1	known	missense	c.619	p.G207R	1.000	NULL	pfam_Peptidase_C19/C67,superfamily_UBA-like,superfamily_ARM-type_fold,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Peptidase_C19/C67	-	no_errors	USP24	HGNC	ENSG00000162402				29	0	0	25	3	10.7143
PRKAA2	0	genome.wustl.edu	37	1	57159508	57159508	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	57159508	57159508	T	C	SNP	PRKAA2	ENST00000371244	human	ensembl	74_37	+1	known	silent	c.546	p.P182	0.172	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_KA1/Ssp2_C,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	PRKAA2	HGNC	ENSG00000162409				229	0	0	148	16	9.7561
C8B	0	genome.wustl.edu	37	1	57420406	57420406	+	Nonsense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	57420406	57420406	A	T	SNP	C8B	ENST00000371237	human	ensembl	74_37	-1	known	nonsense	c.486	p.C162*	0.552	NULL	pfam_MACPF,pfam_LDrepeatLR_classA_rpt,superfamily_Thrombospondin_1_rpt,superfamily_LDrepeatLR_classA_rpt,smart_Thrombospondin_1_rpt,smart_LDrepeatLR_classA_rpt,smart_MACPF,pfscan_LDrepeatLR_classA_rpt,pfscan_Thrombospondin_1_rpt,prints_MAC_perforin	-	no_errors	C8B	HGNC	ENSG00000021852				119	1	0.833333	98	8	7.54717
DAB1	0	genome.wustl.edu	37	1	57535065	57535065	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	57535065	57535065	G	A	SNP	DAB1	ENST00000371231	human	ensembl	74_37	-1	known	missense	c.631	p.R211C	1.000	NULL	pfam_PTB/PI_dom,smart_PTB/PI_dom,pfscan_PTB/PI_dom	-	no_errors	DAB1	HGNC	ENSG00000173406				120	0	0	89	21	19.0909
JUN	0	genome.wustl.edu	37	1	59248625	59248625	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	59248625	59248625	G	T	SNP	JUN	ENST00000371222	human	ensembl	74_37	-1	known	missense	c.118	p.L40M	1.000	pfam_JNK	pfam_JNK,pfam_bZIP,superfamily_TF_DNA-bd,smart_bZIP,pfscan_bZIP,prints_Leuzip_Jun	-	no_errors	JUN	HGNC	ENSG00000177606				154	0	0	178	12	6.31579
NPHP4	0	genome.wustl.edu	37	1	6008211	6008211	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	6008211	6008211	A	G	SNP	NPHP4	ENST00000378156	human	ensembl	74_37	-1	known	missense	c.911	p.V304A	0.210	NULL	NULL	-	no_errors	NPHP4	HGNC	ENSG00000131697				36	0	0	35	3	7.89474
HOOK1	0	genome.wustl.edu	37	1	60299106	60299106	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	60299106	60299106	T	C	SNP	HOOK1	ENST00000371208	human	ensembl	74_37	+1	known	silent	c.303	p.L101	0.969	pfam_Hook-related_fam	pfam_Hook-related_fam,superfamily_Prefoldin	-	no_errors	HOOK1	HGNC	ENSG00000134709				71	0	0	63	7	10
HOOK1	0	genome.wustl.edu	37	1	60330855	60330855	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	60330855	60330855	A	G	SNP	HOOK1	ENST00000371208	human	ensembl	74_37	+1	known	missense	c.1682	p.H561R	1.000	pfam_Hook-related_fam	pfam_Hook-related_fam,superfamily_Prefoldin	-	no_errors	HOOK1	HGNC	ENSG00000134709				98	0	0	44	14	24.1379
CHD5	0	genome.wustl.edu	37	1	6172337	6172337	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	6172337	6172337	T	A	SNP	CHD5	ENST00000262450	human	ensembl	74_37	-1	known	missense	c.5003	p.D1668V	1.000	NULL	pfam_CHD_C2,pfam_SNF2_N,pfam_DUF1086,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD5	HGNC	ENSG00000116254				142	0	0	134	45	25.1397
INADL	0	genome.wustl.edu	37	1	62574144	62574144	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	62574144	62574144	G	A	SNP	INADL	ENST00000371158	human	ensembl	74_37	+1	known	silent	c.4413	p.G1471	0.998	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,pfam_L27_2,superfamily_PDZ,smart_L27,smart_PDZ,pfscan_L27,pfscan_PDZ	-	no_errors	INADL	HGNC	ENSG00000132849				65	0	0	48	4	7.69231
INADL	0	genome.wustl.edu	37	1	62614010	62614010	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	62614010	62614010	A	G	SNP	INADL	ENST00000371158	human	ensembl	74_37	+1	known	missense	c.5326	p.T1776A	0.001	NULL	pfam_PDZ,pfam_L27_2,superfamily_PDZ,smart_L27,smart_PDZ,pfscan_L27,pfscan_PDZ	-	no_errors	INADL	HGNC	ENSG00000132849				242	0	0	210	17	7.48899
L1TD1	0	genome.wustl.edu	37	1	62675548	62675548	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	62675548	62675548	C	T	SNP	L1TD1	ENST00000498273	human	ensembl	74_37	+1	known	missense	c.1102	p.P368S	0.004	NULL	pfam_Transposase_22,superfamily_STAT_TF_coiled-coil	-	no_errors	L1TD1	HGNC	ENSG00000240563				203	0	0	137	10	6.80272
L1TD1	0	genome.wustl.edu	37	1	62675858	62675858	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	62675858	62675858	A	T	SNP	L1TD1	ENST00000498273	human	ensembl	74_37	+1	known	missense	c.1412	p.D471V	0.000	NULL	pfam_Transposase_22,superfamily_STAT_TF_coiled-coil	-	no_errors	L1TD1	HGNC	ENSG00000240563				80	0	0	67	10	12.987
KANK4	0	genome.wustl.edu	37	1	62738936	62738936	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	62738936	62738936	A	G	SNP	KANK4	ENST00000371153	human	ensembl	74_37	-1	known	missense	c.1840	p.Y614H	1.000	NULL	pfam_KN_motif,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	KANK4	HGNC	ENSG00000132854				49	0	0	38	4	9.52381
DOCK7	0	genome.wustl.edu	37	1	63090947	63090947	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	63090947	63090947	T	A	SNP	DOCK7	ENST00000251157	human	ensembl	74_37	-1	known	missense	c.1408	p.T470S	1.000	NULL	pfam_DOCK_C,pfam_DOCK_C/D_N,superfamily_ARM-type_fold	-	no_errors	DOCK7	HGNC	ENSG00000116641				196	0	0	152	14	8.43373
GPR153	0	genome.wustl.edu	37	1	6311498	6311498	+	Silent	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	6311498	6311498	C	A	SNP	GPR153	ENST00000377893	human	ensembl	74_37	-1	known	silent	c.879	p.L293	1.000	pfam_GPCR_Rhodpsn,prints_GCR_153/162	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPR153,prints_GCR_153/162	-	no_errors	GPR153	HGNC	ENSG00000158292				62	0	0	60	5	7.69231
GPR153	0	genome.wustl.edu	37	1	6314057	6314057	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	6314057	6314057	G	A	SNP	GPR153	ENST00000377893	human	ensembl	74_37	-1	known	silent	c.507	p.G169	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GCR_153/162	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPR153,prints_GCR_153/162	-	no_errors	GPR153	HGNC	ENSG00000158292				39	0	0	29	4	12.1212
CACHD1	0	genome.wustl.edu	37	1	65120394	65120394	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	65120394	65120394	G	A	SNP	CACHD1	ENST00000371073	human	ensembl	74_37	+1	known	missense	c.1690	p.A564T	0.972	NULL	pfam_VWA_N,pfam_Cache_domain,pfscan_VWF_A	-	no_errors	CACHD1	HGNC	ENSG00000158966				171	0	0	148	9	5.73248
TNFRSF25	0	genome.wustl.edu	37	1	6521665	6521665	+	Silent	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	6521665	6521665	G	T	SNP	TNFRSF25	ENST00000377782	human	ensembl	74_37	-1	known	silent	c.1110	p.I370	0.997	pfam_Death_domain,superfamily_DEATH-like_dom,smart_Death_domain,pfscan_Death_domain	pfam_Death_domain,superfamily_DEATH-like_dom,smart_TNFR/NGFR_Cys_rich_reg,smart_Death_domain,prints_TNFR_25,pfscan_Death_domain,pfscan_TNFR/NGFR_Cys_rich_reg	-	no_errors	TNFRSF25	HGNC	ENSG00000215788				26	0	0	24	4	14.2857
JAK1	0	genome.wustl.edu	37	1	65332662	65332662	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	65332662	65332662	T	A	SNP	JAK1	ENST00000342505	human	ensembl	74_37	-1	known	missense	c.877	p.I293F	1.000	pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_FERM_domain	pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_FERM_central,smart_Band_41_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Tyr_kinase_non-rcpt_Jak1,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_FERM_domain,pfscan_SH2,pfscan_Prot_kinase_dom	-	no_errors	JAK1	HGNC	ENSG00000162434				174	0	0	112	10	8.19672
DNAJC6	0	genome.wustl.edu	37	1	65851520	65851520	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	65851520	65851520	G	A	SNP	DNAJC6	ENST00000371069	human	ensembl	74_37	+1	known	missense	c.926	p.R309H	1.000	pfam_Tensin_phosphatase_C2-dom,superfamily_C2_dom,pfscan_Tensin_phosphatase_C2-dom	pfam_Tensin_phosphatase_C2-dom,pfam_DnaJ_domain,superfamily_DnaJ_domain,superfamily_C2_dom,smart_DnaJ_domain,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom,pfscan_DnaJ_domain	-	no_errors	DNAJC6	HGNC	ENSG00000116675				98	0	0	82	6	6.81818
DNAJC6	0	genome.wustl.edu	37	1	65871610	65871610	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	65871610	65871610	C	T	SNP	DNAJC6	ENST00000371069	human	ensembl	74_37	+1	known	missense	c.2285	p.P762L	0.997	NULL	pfam_Tensin_phosphatase_C2-dom,pfam_DnaJ_domain,superfamily_DnaJ_domain,superfamily_C2_dom,smart_DnaJ_domain,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom,pfscan_DnaJ_domain	-	no_errors	DNAJC6	HGNC	ENSG00000116675				71	0	0	78	5	6.0241
DNAJC6	0	genome.wustl.edu	37	1	65878634	65878634	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	65878634	65878634	G	A	SNP	DNAJC6	ENST00000371069	human	ensembl	74_37	+1	known	missense	c.2839	p.A947T	1.000	pfam_DnaJ_domain,superfamily_DnaJ_domain,smart_DnaJ_domain,pfscan_DnaJ_domain	pfam_Tensin_phosphatase_C2-dom,pfam_DnaJ_domain,superfamily_DnaJ_domain,superfamily_C2_dom,smart_DnaJ_domain,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom,pfscan_DnaJ_domain	-	no_errors	DNAJC6	HGNC	ENSG00000116675				295	0	0	182	14	7.14286
LEPR	0	genome.wustl.edu	37	1	66102560	66102560	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	66102560	66102560	C	A	SNP	LEPR	ENST00000349533	human	ensembl	74_37	+1	known	nonsense	c.3360	p.C1120*	0.553	NULL	pfam_IgC2-like_lig-bd,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	LEPR	HGNC	ENSG00000116678				98	0	0	37	12	24.4898
ZBTB48	0	genome.wustl.edu	37	1	6649079	6649079	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	6649079	6649079	T	C	SNP	ZBTB48	ENST00000377674	human	ensembl	74_37	+1	known	missense	c.1874	p.V625A	1.000	NULL	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB48	HGNC	ENSG00000204859				107	1	0.925926	88	28	24.1379
DNAJC11	0	genome.wustl.edu	37	1	6712987	6712987	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	6712987	6712987	C	T	SNP	DNAJC11	ENST00000377577	human	ensembl	74_37	-1	known	missense	c.532	p.A178T	1.000	NULL	pfam_DnaJ-like_C11_C,pfam_DnaJ_domain,superfamily_DnaJ_domain,smart_DnaJ_domain,pfscan_DnaJ_domain,prints_DnaJ_domain	-	no_errors	DNAJC11	HGNC	ENSG00000007923				152	1	0.653595	104	12	10.3448
WDR78	0	genome.wustl.edu	37	1	67356835	67356835	+	Splice_Site	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	67356835	67356835	A	G	SNP	WDR78	ENST00000371026	human	ensembl	74_37	-1	known	splice_site	c.643+2	e4+2	1.000	-	-	-	no_errors	WDR78	HGNC	ENSG00000152763				134	0	0	91	9	9
MIER1	0	genome.wustl.edu	37	1	67411924	67411924	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	67411924	67411924	A	G	SNP	MIER1	ENST00000401041	human	ensembl	74_37	+1	known	silent	c.285	p.E95	1.000	NULL	pfam_ELM2_dom,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_ELM2_dom	-	no_errors	MIER1	HGNC	ENSG00000198160				98	0	0	71	6	7.79221
SLC35D1	0	genome.wustl.edu	37	1	67512970	67512970	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	67512970	67512970	A	G	SNP	SLC35D1	ENST00000235345	human	ensembl	74_37	-1	known	missense	c.614	p.V205A	1.000	pfam_Tpt_PEP_trans_dom	pfam_Tpt_PEP_trans_dom	-	no_errors	SLC35D1	HGNC	ENSG00000116704				87	0	0	54	5	8.47458
IL23R	0	genome.wustl.edu	37	1	67721560	67721560	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	67721560	67721560	T	C	SNP	IL23R	ENST00000347310	human	ensembl	74_37	+1	known	missense	c.1189	p.Y397H	0.998	NULL	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL23R	HGNC	ENSG00000162594				69	0	0	48	6	11.1111
IL12RB2	0	genome.wustl.edu	37	1	67787284	67787284	+	Splice_Site	SNP	G	G	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	67787284	67787284	G	C	SNP	IL12RB2	ENST00000262345	human	ensembl	74_37	+1	known	splice_site	c.77-1	e2-1	1.000	-	-	-	no_errors	IL12RB2	HGNC	ENSG00000081985				138	0	0	118	8	6.34921
LRRC7	0	genome.wustl.edu	37	1	70226075	70226075	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	70226075	70226075	A	G	SNP	LRRC7	ENST00000035383	human	ensembl	74_37	+1	known	missense	c.188	p.K63R	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_PDZ,superfamily_PDZ,smart_Leu-rich_rpt_typical-subtyp,smart_PDZ,pfscan_PDZ	-	no_errors	LRRC7	HGNC	ENSG00000033122				48	0	0	29	5	14.7059
LRRC7	0	genome.wustl.edu	37	1	70504911	70504911	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	70504911	70504911	C	T	SNP	LRRC7	ENST00000035383	human	ensembl	74_37	+1	known	missense	c.3290	p.A1097V	0.986	NULL	pfam_Leu-rich_rpt,pfam_PDZ,superfamily_PDZ,smart_Leu-rich_rpt_typical-subtyp,smart_PDZ,pfscan_PDZ	-	no_errors	LRRC7	HGNC	ENSG00000033122				106	0	0	110	9	7.56303
SRSF11	0	genome.wustl.edu	37	1	70694201	70694201	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	70694201	70694201	C	T	SNP	SRSF11	ENST00000370950	human	ensembl	74_37	+1	known	silent	c.300	p.F100	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	SRSF11	HGNC	ENSG00000116754				134	0	0	119	9	7.03125
SRSF11	0	genome.wustl.edu	37	1	70710485	70710485	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	70710485	70710485	A	G	SNP	SRSF11	ENST00000370950	human	ensembl	74_37	+1	known	missense	c.919	p.T307A	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	SRSF11	HGNC	ENSG00000116754				50	0	0	48	3	5.88235
FPGT-TNNI3K	0	genome.wustl.edu	37	1	74737329	74737329	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	74737329	74737329	A	G	SNP	FPGT-TNNI3K	ENST00000557284	human	ensembl	74_37	+1	known	missense	c.723	p.I241M	0.989	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Prot_kinase_dom,prints_Ankyrin_rpt,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	FPGT-TNNI3K	HGNC	ENSG00000259030				185	0	0	137	19	12.1795
C1orf173	0	genome.wustl.edu	37	1	75036811	75036811	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	75036811	75036811	A	G	SNP	C1orf173	ENST00000326665	human	ensembl	74_37	-1	known	missense	c.4583	p.V1528A	0.000	NULL	NULL	-	no_errors	C1orf173	HGNC	ENSG00000178965				144	0	0	135	18	11.7647
C1orf173	0	genome.wustl.edu	37	1	75072508	75072508	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	75072508	75072508	C	A	SNP	C1orf173	ENST00000326665	human	ensembl	74_37	-1	known	missense	c.1266	p.E422D	0.210	NULL	NULL	-	no_errors	C1orf173	HGNC	ENSG00000178965				165	0	0	139	13	8.55263
CRYZ	0	genome.wustl.edu	37	1	75175906	75175906	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	75175906	75175906	G	T	SNP	CRYZ	ENST00000340866	human	ensembl	74_37	-1	known	missense	c.506	p.A169D	1.000	pfam_ADH_C,smart_PKS_ER	pfam_ADH_C,pfam_ADH_GroES-like,superfamily_GroES-like,smart_PKS_ER	-	no_errors	CRYZ	HGNC	ENSG00000116791				78	0	0	59	4	6.34921
ASB17	0	genome.wustl.edu	37	1	76384670	76384670	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	76384670	76384670	A	G	SNP	ASB17	ENST00000284142	human	ensembl	74_37	-1	known	silent	c.855	p.A285	0.889	pfam_SOCS_C,smart_SOCS_C,pfscan_SOCS_C	pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_SOCS_C,pfscan_SOCS_C	-	no_errors	ASB17	HGNC	ENSG00000154007				118	0	0	76	5	6.17284
CAMTA1	0	genome.wustl.edu	37	1	7797373	7797373	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	7797373	7797373	G	A	SNP	CAMTA1	ENST00000303635	human	ensembl	74_37	+1	known	missense	c.3401	p.R1134H	1.000	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	pfam_CG-1_dom,pfam_IPT,pfam_IQ_motif_EF-hand-BS,superfamily_Ig_E-set,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	CAMTA1	HGNC	ENSG00000171735				120	0	0	88	33	27.2727
CAMTA1	0	genome.wustl.edu	37	1	7798045	7798045	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	7798045	7798045	T	G	SNP	CAMTA1	ENST00000303635	human	ensembl	74_37	+1	known	missense	c.3685	p.S1229A	1.000	NULL	pfam_CG-1_dom,pfam_IPT,pfam_IQ_motif_EF-hand-BS,superfamily_Ig_E-set,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	CAMTA1	HGNC	ENSG00000171735				134	0	0	94	9	8.73786
ZZZ3	0	genome.wustl.edu	37	1	78047779	78047779	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	78047779	78047779	A	G	SNP	ZZZ3	ENST00000370801	human	ensembl	74_37	-1	known	silent	c.1677	p.V559	1.000	NULL	pfam_SANT/Myb,pfam_Znf_ZZ,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Znf_ZZ,pfscan_Myb-like_dom	-	no_errors	ZZZ3	HGNC	ENSG00000036549				268	0	0	180	19	9.54774
USP33	0	genome.wustl.edu	37	1	78194238	78194238	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	78194238	78194238	A	G	SNP	USP33	ENST00000357428	human	ensembl	74_37	-1	known	missense	c.970	p.C324R	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfam_Pept_C19_DUSP,pfam_Znf_UBP,smart_Znf_UBP,smart_Pept_C19_DUSP,pfscan_Znf_UBP,pfscan_Peptidase_C19/C67	-	no_errors	USP33	HGNC	ENSG00000077254				149	0	0	82	5	5.74713
USP33	0	genome.wustl.edu	37	1	78205094	78205094	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	78205094	78205094	C	T	SNP	USP33	ENST00000357428	human	ensembl	74_37	-1	known	silent	c.300	p.K100	1.000	pfam_Znf_UBP,smart_Znf_UBP,pfscan_Znf_UBP	pfam_Peptidase_C19/C67,pfam_Pept_C19_DUSP,pfam_Znf_UBP,smart_Znf_UBP,smart_Pept_C19_DUSP,pfscan_Znf_UBP,pfscan_Peptidase_C19/C67	-	no_errors	USP33	HGNC	ENSG00000077254				77	0	0	41	3	6.81818
USP33	0	genome.wustl.edu	37	1	78207399	78207399	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	78207399	78207399	T	C	SNP	USP33	ENST00000357428	human	ensembl	74_37	-1	known	missense	c.77	p.E26G	0.005	NULL	pfam_Peptidase_C19/C67,pfam_Pept_C19_DUSP,pfam_Znf_UBP,smart_Znf_UBP,smart_Pept_C19_DUSP,pfscan_Znf_UBP,pfscan_Peptidase_C19/C67	-	no_errors	USP33	HGNC	ENSG00000077254				72	0	0	40	4	9.09091
FUBP1	0	genome.wustl.edu	37	1	78425903	78425903	+	Nonsense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	78425903	78425903	A	T	SNP	FUBP1	ENST00000436586	human	ensembl	74_37	-1	known	nonsense	c.1605	p.Y535*	1.000	NULL	pfam_KH_dom_type_1,pfam_KH_dom_type_2,pfam_DUF1897,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	FUBP1	HGNC	ENSG00000162613				84	0	0	73	7	8.75
FUBP1	0	genome.wustl.edu	37	1	78429943	78429943	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	78429943	78429943	C	T	SNP	FUBP1	ENST00000436586	human	ensembl	74_37	-1	known	silent	c.999	p.K333	0.984	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	pfam_KH_dom_type_1,pfam_KH_dom_type_2,pfam_DUF1897,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	FUBP1	HGNC	ENSG00000162613				75	0	0	69	6	8
PER3	0	genome.wustl.edu	37	1	7887864	7887864	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	7887864	7887864	C	T	SNP	PER3	ENST00000361923	human	ensembl	74_37	+1	known	nonsense	c.2851	p.Q951*	0.000	NULL	pfam_Period_circadian-like_C,pfam_PAS_fold_3,pfam_PAS_fold,superfamily_PAS,smart_PAS,pfscan_PAS	-	no_errors	PER3	HGNC	ENSG00000049246				52	0	0	51	7	12.069
IFI44	0	genome.wustl.edu	37	1	79129502	79129502	+	RNA	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	79129502	79129502	T	C	SNP	IFI44	ENST00000472152	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	IFI44	HGNC	ENSG00000137965				55	0	0	35	2	5.40541
LPHN2	0	genome.wustl.edu	37	1	82432273	82432273	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	82432273	82432273	T	C	SNP	LPHN2	ENST00000370717	human	ensembl	74_37	+1	known	missense	c.2317	p.F773L	1.000	NULL	pfam_GPCR_2_latrophilin_rcpt_C,pfam_Olfac-like,pfam_DUF3497,pfam_GPCR_2_secretin-like,pfam_Lectin_gal-bd_dom,pfam_GPS_dom,pfam_GPCR_2_extracellular_dom,smart_Olfac-like,smart_GPCR_2_extracellular_dom,smart_GPS_dom,prints_GPCR_2_latrophilin,prints_GPCR_2_secretin-like,pfscan_GPS_dom,pfscan_Lectin_gal-bd_dom,pfscan_Olfac-like,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like	-	no_errors	LPHN2	HGNC	ENSG00000117114				182	0	0	150	15	9.09091
LPHN2	0	genome.wustl.edu	37	1	82436047	82436047	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	82436047	82436047	C	T	SNP	LPHN2	ENST00000370717	human	ensembl	74_37	+1	known	missense	c.2771	p.A924V	1.000	pfam_GPCR_2_secretin-like,prints_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_latrophilin_rcpt_C,pfam_Olfac-like,pfam_DUF3497,pfam_GPCR_2_secretin-like,pfam_Lectin_gal-bd_dom,pfam_GPS_dom,pfam_GPCR_2_extracellular_dom,smart_Olfac-like,smart_GPCR_2_extracellular_dom,smart_GPS_dom,prints_GPCR_2_latrophilin,prints_GPCR_2_secretin-like,pfscan_GPS_dom,pfscan_Lectin_gal-bd_dom,pfscan_Olfac-like,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like	-	no_errors	LPHN2	HGNC	ENSG00000117114				187	0	0	128	10	7.24638
LPHN2	0	genome.wustl.edu	37	1	82447656	82447656	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	82447656	82447656	A	G	SNP	LPHN2	ENST00000370717	human	ensembl	74_37	+1	known	missense	c.3311	p.K1104R	1.000	prints_GPCR_2_latrophilin	pfam_GPCR_2_latrophilin_rcpt_C,pfam_Olfac-like,pfam_DUF3497,pfam_GPCR_2_secretin-like,pfam_Lectin_gal-bd_dom,pfam_GPS_dom,pfam_GPCR_2_extracellular_dom,smart_Olfac-like,smart_GPCR_2_extracellular_dom,smart_GPS_dom,prints_GPCR_2_latrophilin,prints_GPCR_2_secretin-like,pfscan_GPS_dom,pfscan_Lectin_gal-bd_dom,pfscan_Olfac-like,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like	-	no_errors	LPHN2	HGNC	ENSG00000117114				89	0	0	54	8	12.9032
LPHN2	0	genome.wustl.edu	37	1	82456638	82456638	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	82456638	82456638	T	C	SNP	LPHN2	ENST00000370717	human	ensembl	74_37	+1	known	missense	c.4234	p.S1412P	1.000	pfam_GPCR_2_latrophilin_rcpt_C	pfam_GPCR_2_latrophilin_rcpt_C,pfam_Olfac-like,pfam_DUF3497,pfam_GPCR_2_secretin-like,pfam_Lectin_gal-bd_dom,pfam_GPS_dom,pfam_GPCR_2_extracellular_dom,smart_Olfac-like,smart_GPCR_2_extracellular_dom,smart_GPS_dom,prints_GPCR_2_latrophilin,prints_GPCR_2_secretin-like,pfscan_GPS_dom,pfscan_Lectin_gal-bd_dom,pfscan_Olfac-like,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like	-	no_errors	LPHN2	HGNC	ENSG00000117114				86	0	0	79	10	11.236
RERE	0	genome.wustl.edu	37	1	8418702	8418702	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	8418702	8418702	G	A	SNP	RERE	ENST00000337907	human	ensembl	74_37	-1	known	missense	c.3893	p.T1298I	1.000	pfam_Atrophin-like	pfam_Atrophin-like,pfam_BAH_dom,pfam_ELM2_dom,pfam_Znf_GATA,superfamily_Homeodomain-like,smart_BAH_dom,smart_SANT/Myb,smart_Znf_GATA,pfscan_BAH_dom,pfscan_ELM2_dom	-	no_errors	RERE	HGNC	ENSG00000142599				48	0	0	46	4	8
TTLL7	0	genome.wustl.edu	37	1	84394847	84394847	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	84394847	84394847	G	A	SNP	TTLL7	ENST00000260505	human	ensembl	74_37	-1	known	silent	c.1114	p.L372	1.000	pfam_TTL/TTLL_fam	pfam_TTL/TTLL_fam	-	no_errors	TTLL7	HGNC	ENSG00000137941				87	0	0	66	5	7.04225
TTLL7	0	genome.wustl.edu	37	1	84394887	84394887	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	84394887	84394887	A	G	SNP	TTLL7	ENST00000260505	human	ensembl	74_37	-1	known	silent	c.1074	p.T358	0.999	pfam_TTL/TTLL_fam	pfam_TTL/TTLL_fam	-	no_errors	TTLL7	HGNC	ENSG00000137941				86	0	0	66	7	9.58904
TTLL7	0	genome.wustl.edu	37	1	84403686	84403686	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	84403686	84403686	A	G	SNP	TTLL7	ENST00000260505	human	ensembl	74_37	-1	known	missense	c.737	p.M246T	1.000	pfam_TTL/TTLL_fam	pfam_TTL/TTLL_fam	-	no_errors	TTLL7	HGNC	ENSG00000137941				129	0	0	103	11	9.64912
TTLL7	0	genome.wustl.edu	37	1	84417647	84417647	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	84417647	84417647	G	A	SNP	TTLL7	ENST00000260505	human	ensembl	74_37	-1	known	missense	c.38	p.P13L	0.821	NULL	pfam_TTL/TTLL_fam	-	no_errors	TTLL7	HGNC	ENSG00000137941				73	0	0	54	8	12.9032
DNASE2B	0	genome.wustl.edu	37	1	84864327	84864327	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	84864327	84864327	C	T	SNP	DNASE2B	ENST00000370665	human	ensembl	74_37	+1	known	missense	c.80	p.A27V	0.033	pfam_DNase_II	pfam_DNase_II	-	no_errors	DNASE2B	HGNC	ENSG00000137976				252	0	0	184	48	20.6897
RPF1	0	genome.wustl.edu	37	1	84961748	84961748	+	Splice_Site	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	84961748	84961748	T	C	SNP	RPF1	ENST00000370654	human	ensembl	74_37	+1	known	splice_site	c.881+2	e7+2	1.000	-	-	-	no_errors	RPF1	HGNC	ENSG00000117133				60	0	0	48	3	5.88235
SSX2IP	0	genome.wustl.edu	37	1	85128059	85128059	+	Splice_Site	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	85128059	85128059	C	T	SNP	SSX2IP	ENST00000342203	human	ensembl	74_37	-1	known	splice_site	c.750-1	e7-1	1.000	-	-	-	no_errors	SSX2IP	HGNC	ENSG00000117155				101	0	0	80	10	11.1111
LPAR3	0	genome.wustl.edu	37	1	85279740	85279740	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	85279740	85279740	A	C	SNP	LPAR3	ENST00000370611	human	ensembl	74_37	-1	known	missense	c.851	p.L284R	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Melcrt_ACTH_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_LPA_rcpt_EDG7,prints_GPCR_Rhodpsn,prints_LPA_rcpt,prints_LPA_rcpt_EDG2,prints_Melcrt_ACTH_rcpt	-	no_errors	LPAR3	HGNC	ENSG00000171517				79	0	0	99	7	6.60377
MCOLN3	0	genome.wustl.edu	37	1	85484879	85484879	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	85484879	85484879	T	A	SNP	MCOLN3	ENST00000370589	human	ensembl	74_37	-1	known	missense	c.1589	p.D530V	1.000	NULL	pfam_PKD1_2_channel	-	no_errors	MCOLN3	HGNC	ENSG00000055732				110	0	0	76	4	5
RERE	0	genome.wustl.edu	37	1	8568729	8568729	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	8568729	8568729	A	G	SNP	RERE	ENST00000337907	human	ensembl	74_37	-1	known	missense	c.836	p.L279P	1.000	pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	pfam_Atrophin-like,pfam_BAH_dom,pfam_ELM2_dom,pfam_Znf_GATA,superfamily_Homeodomain-like,smart_BAH_dom,smart_SANT/Myb,smart_Znf_GATA,pfscan_BAH_dom,pfscan_ELM2_dom	-	no_errors	RERE	HGNC	ENSG00000142599				86	0	0	68	10	12.8205
PKN2	0	genome.wustl.edu	37	1	89226053	89226053	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	89226053	89226053	T	C	SNP	PKN2	ENST00000370521	human	ensembl	74_37	+1	known	silent	c.498	p.S166	0.997	pfam_HR1_rho-bd,superfamily_HR1_rho-bd,smart_HR1_rho-bd	pfam_Prot_kinase_dom,pfam_HR1_rho-bd,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_HR1_rho-bd,superfamily_C2_dom,smart_HR1_rho-bd,smart_C2_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_dom	-	no_errors	PKN2	HGNC	ENSG00000065243				217	0	0	117	17	12.6866
GBP1	0	genome.wustl.edu	37	1	89521797	89521797	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	89521797	89521797	C	T	SNP	GBP1	ENST00000370473	human	ensembl	74_37	-1	known	missense	c.1270	p.A424T	0.000	pfam_Guanylate-bd_C,superfamily_Guanylate-bd_C	pfam_Guanylate-bd_C,pfam_Guanylate-bd_N,superfamily_Guanylate-bd_C,superfamily_P-loop_NTPase	-	no_errors	GBP1	HGNC	ENSG00000117228				245	0	0	200	15	6.97674
GBP1	0	genome.wustl.edu	37	1	89523757	89523757	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	89523757	89523757	T	C	SNP	GBP1	ENST00000370473	human	ensembl	74_37	-1	known	silent	c.792	p.Q264	0.089	pfam_Guanylate-bd_N,superfamily_P-loop_NTPase	pfam_Guanylate-bd_C,pfam_Guanylate-bd_N,superfamily_Guanylate-bd_C,superfamily_P-loop_NTPase	-	no_errors	GBP1	HGNC	ENSG00000117228				284	2	0.699301	177	51	22.3684
GBP1	0	genome.wustl.edu	37	1	89528932	89528932	+	RNA	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	89528932	89528932	C	A	SNP	GBP1	ENST00000469194	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	GBP1	HGNC	ENSG00000117228				108	1	0.917431	96	6	5.88235
GBP5	0	genome.wustl.edu	37	1	89727976	89727976	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	89727976	89727976	T	C	SNP	GBP5	ENST00000343435	human	ensembl	74_37	-1	known	missense	c.1574	p.Q525R	0.888	pfam_Guanylate-bd_C,superfamily_Guanylate-bd_C	pfam_Guanylate-bd_N,pfam_Guanylate-bd_C,superfamily_Guanylate-bd_C,superfamily_P-loop_NTPase	-	no_errors	GBP5	HGNC	ENSG00000154451				128	0	0	100	7	6.54206
LRRC8D	0	genome.wustl.edu	37	1	90400154	90400154	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	90400154	90400154	T	C	SNP	LRRC8D	ENST00000337338	human	ensembl	74_37	+1	known	silent	c.1527	p.I509	0.927	NULL	pfam_LRR_protein-8_N,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC8D	HGNC	ENSG00000171492				126	0	0	90	20	18.1818
BARHL2	0	genome.wustl.edu	37	1	91180132	91180132	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	91180132	91180132	G	A	SNP	BARHL2	ENST00000370445	human	ensembl	74_37	-1	known	silent	c.807	p.L269	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	BARHL2	HGNC	ENSG00000143032				107	0	0	102	6	5.55556
ZNF644	0	genome.wustl.edu	37	1	91382481	91382481	+	Silent	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	91382481	91382481	T	A	SNP	ZNF644	ENST00000337393	human	ensembl	74_37	-1	known	silent	c.3858	p.R1286	1.000	smart_Znf_C2H2-like	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF644	HGNC	ENSG00000122482				78	0	0	60	5	7.69231
HFM1	0	genome.wustl.edu	37	1	91779569	91779569	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	91779569	91779569	C	T	SNP	HFM1	ENST00000370425	human	ensembl	74_37	-1	known	silent	c.3189	p.V1063	0.928	pfam_Sec63-dom,smart_Sec63-dom	pfam_Sec63-dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Sec63-dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	HFM1	HGNC	ENSG00000162669				250	0	0	164	13	7.34463
HFM1	0	genome.wustl.edu	37	1	91816380	91816380	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	91816380	91816380	A	G	SNP	HFM1	ENST00000370425	human	ensembl	74_37	-1	known	silent	c.2121	p.H707	0.985	pfscan_Helicase_C	pfam_Sec63-dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Sec63-dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	HFM1	HGNC	ENSG00000162669				172	0	0	84	14	14.2857
GPR157	0	genome.wustl.edu	37	1	9188749	9188749	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	9188749	9188749	C	T	SNP	GPR157	ENST00000377411	human	ensembl	74_37	-1	known	missense	c.338	p.R113H	0.057	pfam_GPCR_2_secretin-like,pfam_GPCR_Rhodpsn,pfam_Frizzled,pfscan_GPCR_Rhodpsn_7TM,pfscan_GPCR_2-like	pfam_GPCR_2_secretin-like,pfam_GPCR_Rhodpsn,pfam_Frizzled,pfscan_GPCR_Rhodpsn_7TM,pfscan_GPCR_2-like,prints_GCR1-cAMP_receptor	-	no_errors	GPR157	HGNC	ENSG00000180758				31	0	0	32	8	20
BRDT	0	genome.wustl.edu	37	1	92428390	92428390	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	92428390	92428390	C	T	SNP	BRDT	ENST00000362005	human	ensembl	74_37	+1	known	nonsense	c.79	p.R27*	0.920	superfamily_Bromodomain,smart_Bromodomain	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRDT	HGNC	ENSG00000137948				128	0	0	92	8	8
BRDT	0	genome.wustl.edu	37	1	92433761	92433761	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	92433761	92433761	T	C	SNP	BRDT	ENST00000362005	human	ensembl	74_37	+1	known	missense	c.389	p.L130S	0.994	superfamily_Bromodomain,smart_Bromodomain	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRDT	HGNC	ENSG00000137948				69	0	0	49	5	9.25926
CCDC18	0	genome.wustl.edu	37	1	93651933	93651933	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	93651933	93651933	A	G	SNP	CCDC18	ENST00000557479	human	ensembl	74_37	+1	known	missense	c.689	p.E230G	1.000	NULL	superfamily_Prefoldin,superfamily_tRNA-bd_arm	-	no_errors	CCDC18	HGNC	ENSG00000122483				75	0	0	43	3	6.52174
BCAR3	0	genome.wustl.edu	37	1	94033334	94033334	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	94033334	94033334	C	T	SNP	BCAR3	ENST00000260502	human	ensembl	74_37	-1	known	silent	c.2049	p.Q683	0.997	pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_SH2,pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_SH2,smart_RasGRF_CDC25,pfscan_SH2,pfscan_RasGRF_CDC25	-	no_errors	BCAR3	HGNC	ENSG00000137936				118	0	0	99	11	10
BCAR3	0	genome.wustl.edu	37	1	94049596	94049596	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	94049596	94049596	A	G	SNP	BCAR3	ENST00000260502	human	ensembl	74_37	-1	known	missense	c.1012	p.S338P	1.000	NULL	pfam_SH2,pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_SH2,smart_RasGRF_CDC25,pfscan_SH2,pfscan_RasGRF_CDC25	-	no_errors	BCAR3	HGNC	ENSG00000137936				76	0	0	85	6	6.59341
BCAR3	0	genome.wustl.edu	37	1	94054955	94054955	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	94054955	94054955	G	A	SNP	BCAR3	ENST00000260502	human	ensembl	74_37	-1	known	nonsense	c.508	p.R170*	1.000	pfam_SH2,smart_SH2,pfscan_SH2	pfam_SH2,pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_SH2,smart_RasGRF_CDC25,pfscan_SH2,pfscan_RasGRF_CDC25	-	no_errors	BCAR3	HGNC	ENSG00000137936				40	0	0	28	7	20
DNTTIP2	0	genome.wustl.edu	37	1	94335500	94335500	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	94335500	94335500	T	A	SNP	DNTTIP2	ENST00000436063	human	ensembl	74_37	-1	known	missense	c.2178	p.R726S	0.956	pfam_Fcf2	pfam_Fcf2	-	no_errors	DNTTIP2	HGNC	ENSG00000067334				72	0	0	65	5	7.14286
DNTTIP2	0	genome.wustl.edu	37	1	94338708	94338708	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	94338708	94338708	A	G	SNP	DNTTIP2	ENST00000359208	human	ensembl	74_37	-1	known	missense	c.1730	p.V577A	0.975	NULL	NULL	-	no_errors	DNTTIP2	HGNC	ENSG00000067334				92	0	0	64	8	11.1111
ABCA4	0	genome.wustl.edu	37	1	94476478	94476478	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	94476478	94476478	C	T	SNP	ABCA4	ENST00000370225	human	ensembl	74_37	-1	known	silent	c.5592	p.E1864	0.982	tigrfam_Rim_ABC_transpt	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,tigrfam_Rim_ABC_transpt	-	no_errors	ABCA4	HGNC	ENSG00000198691				75	0	0	58	10	14.7059
ABCA4	0	genome.wustl.edu	37	1	94544162	94544162	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	94544162	94544162	T	C	SNP	ABCA4	ENST00000370225	human	ensembl	74_37	-1	known	missense	c.1340	p.Q447R	1.000	tigrfam_Rim_ABC_transpt	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,tigrfam_Rim_ABC_transpt	-	no_errors	ABCA4	HGNC	ENSG00000198691				240	0	0	226	14	5.83333
ABCD3	0	genome.wustl.edu	37	1	94955477	94955477	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	94955477	94955477	T	G	SNP	ABCD3	ENST00000454898	human	ensembl	74_37	+1	known	missense	c.1340	p.V447G	0.000	superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,tigrfam_FA_transporter	pfam_ABC_Peroxi_TM,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,tigrfam_FA_transporter	-	no_errors	ABCD3	HGNC	ENSG00000117528				176	0	0	122	29	19.2053
DPYD	0	genome.wustl.edu	37	1	97839124	97839124	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	97839124	97839124	C	T	SNP	DPYD	ENST00000370192	human	ensembl	74_37	-1	known	missense	c.2051	p.C684Y	1.000	pfam_Dihydroorotate_DH_1_2,pfam_tRNA_hU_synthase,tigrfam_Dihydroorotate_DH	pfam_Dihydroorotate_DH_1_2,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_tRNA_hU_synthase,superfamily_Helical_ferredxn,prints_FAD_pyr_nucl-diS_OxRdtase,tigrfam_Dihydroorotate_DH	-	no_errors	DPYD	HGNC	ENSG00000188641				87	0	0	56	5	8.19672
AGRN	0	genome.wustl.edu	37	1	985290	985290	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	985290	985290	C	T	SNP	AGRN	ENST00000379370	human	ensembl	74_37	+1	known	silent	c.4752	p.T1584	0.995	smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_Laminin_G,pfam_Agrin_NtA,pfam_Kazal_dom,pfam_EGF_laminin,pfam_SEA_dom,pfam_EG-like_dom,superfamily_TIMP-like_OB-fold,superfamily_ConA-like_lec_gl_sf,smart_FacI_MAC,smart_Fol_N,smart_Kazal_dom,smart_EG-like_dom,smart_EGF_laminin,smart_SEA_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Agrin_NtA,pfscan_SEA_dom	-	no_errors	AGRN	HGNC	ENSG00000188157				53	0	0	56	4	6.66667
AGRN	0	genome.wustl.edu	37	1	986870	986870	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	986870	986870	A	G	SNP	AGRN	ENST00000379370	human	ensembl	74_37	+1	known	missense	c.5408	p.H1803R	0.990	superfamily_ConA-like_lec_gl_sf,pfscan_Laminin_G	pfam_Laminin_G,pfam_Agrin_NtA,pfam_Kazal_dom,pfam_EGF_laminin,pfam_SEA_dom,pfam_EG-like_dom,superfamily_TIMP-like_OB-fold,superfamily_ConA-like_lec_gl_sf,smart_FacI_MAC,smart_Fol_N,smart_Kazal_dom,smart_EG-like_dom,smart_EGF_laminin,smart_SEA_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Agrin_NtA,pfscan_SEA_dom	-	no_errors	AGRN	HGNC	ENSG00000188157				15	0	0	6	3	33.3333
AGRN	0	genome.wustl.edu	37	1	987126	987126	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	987126	987126	C	T	SNP	AGRN	ENST00000379370	human	ensembl	74_37	+1	known	missense	c.5582	p.A1861V	0.753	superfamily_ConA-like_lec_gl_sf	pfam_Laminin_G,pfam_Agrin_NtA,pfam_Kazal_dom,pfam_EGF_laminin,pfam_SEA_dom,pfam_EG-like_dom,superfamily_TIMP-like_OB-fold,superfamily_ConA-like_lec_gl_sf,smart_FacI_MAC,smart_Fol_N,smart_Kazal_dom,smart_EG-like_dom,smart_EGF_laminin,smart_SEA_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Agrin_NtA,pfscan_SEA_dom	-	no_errors	AGRN	HGNC	ENSG00000188157				42	0	0	48	6	11.1111
CTNNBIP1	0	genome.wustl.edu	37	1	9910819	9910819	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	9910819	9910819	A	G	SNP	CTNNBIP1	ENST00000377256	human	ensembl	74_37	-1	known	missense	c.203	p.V68A	1.000	pfam_ICAT,superfamily_ICAT	pfam_ICAT,superfamily_ICAT	-	no_errors	CTNNBIP1	HGNC	ENSG00000178585				115	0	0	96	7	6.79612
LPPR4	0	genome.wustl.edu	37	1	99771407	99771407	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	99771407	99771407	G	A	SNP	LPPR4	ENST00000370185	human	ensembl	74_37	+1	known	missense	c.1133	p.R378Q	0.991	NULL	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	-	no_errors	LPPR4	Uniprot_gn	ENSG00000117600				119	0	0	108	8	6.89655
PYROXD2	0	genome.wustl.edu	37	10	100143449	100143449	+	RNA	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	100143449	100143449	T	C	SNP	PYROXD2	ENST00000483923	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PYROXD2	HGNC	ENSG00000119943				70	0	0	66	8	10.8108
PYROXD2	0	genome.wustl.edu	37	10	100157113	100157113	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	100157113	100157113	A	G	SNP	PYROXD2	ENST00000370575	human	ensembl	74_37	-1	known	missense	c.614	p.L205P	1.000	NULL	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_Amino_oxidase	-	no_errors	PYROXD2	HGNC	ENSG00000119943				119	0	0	81	14	14.7368
CNNM1	0	genome.wustl.edu	37	10	101122008	101122008	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	101122008	101122008	A	G	SNP	CNNM1	ENST00000356713	human	ensembl	74_37	+1	known	missense	c.1883	p.Y628C	1.000	NULL	pfam_DUF21,pfam_CBS_dom	-	no_errors	CNNM1	HGNC	ENSG00000119946				28	0	0	29	3	9.375
SLC25A28	0	genome.wustl.edu	37	10	101370714	101370714	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	101370714	101370714	C	A	SNP	SLC25A28	ENST00000370495	human	ensembl	74_37	-1	known	missense	c.987	p.Q329H	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	SLC25A28	HGNC	ENSG00000155287				76	0	0	77	10	11.4943
ENTPD7	0	genome.wustl.edu	37	10	101445607	101445607	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	101445607	101445607	C	A	SNP	ENTPD7	ENST00000370489	human	ensembl	74_37	+1	known	missense	c.607	p.L203I	1.000	pfam_GDA1_CD39_NTPase	pfam_GDA1_CD39_NTPase	-	no_errors	ENTPD7	HGNC	ENSG00000198018				123	1	0.806452	90	5	5.26316
ENTPD7	0	genome.wustl.edu	37	10	101462387	101462387	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	101462387	101462387	A	G	SNP	ENTPD7	ENST00000370489	human	ensembl	74_37	+1	known	missense	c.1540	p.T514A	1.000	pfam_GDA1_CD39_NTPase	pfam_GDA1_CD39_NTPase	-	no_errors	ENTPD7	HGNC	ENSG00000198018				34	0	0	33	8	19.5122
DNMBP	0	genome.wustl.edu	37	10	101728939	101728939	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	101728939	101728939	T	C	SNP	DNMBP	ENST00000342239	human	ensembl	74_37	-1	known	silent	c.201	p.G67	1.000	superfamily_SH3_domain,pfscan_SH3_domain	pfam_BAR_dom,pfam_SH3_domain,pfam_SH3_2,pfam_DH-domain,superfamily_DH-domain,superfamily_SH3_domain,smart_SH3_domain,smart_DH-domain,smart_BAR_dom,pfscan_BAR_dom,pfscan_SH3_domain,pfscan_DH-domain,prints_p67phox,prints_Spectrin_alpha_SH3	-	no_errors	DNMBP	HGNC	ENSG00000107554				87	0	0	52	7	11.8644
CPN1	0	genome.wustl.edu	37	10	101835695	101835695	+	Silent	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	101835695	101835695	G	T	SNP	CPN1	ENST00000370418	human	ensembl	74_37	-1	known	silent	c.393	p.P131	0.000	pfam_Peptidase_M14,smart_Peptidase_M14	pfam_Peptidase_M14,pfam_DUF2817,superfamily_CarboxyPept-like_regulatory,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPN1	HGNC	ENSG00000120054				51	0	0	37	8	17.7778
LZTS2	0	genome.wustl.edu	37	10	102765378	102765378	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	102765378	102765378	T	C	SNP	LZTS2	ENST00000370220	human	ensembl	74_37	+1	known	missense	c.1232	p.L411P	1.000	NULL	NULL	-	no_errors	LZTS2	HGNC	ENSG00000107816				41	0	0	43	3	6.52174
POLL	0	genome.wustl.edu	37	10	103344632	103344632	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	103344632	103344632	A	G	SNP	POLL	ENST00000436284	human	ensembl	74_37	-1	known	missense	c.191	p.L64S	1.000	NULL	superfamily_BRCT_dom,pfscan_BRCT_dom	-	no_errors	POLL	HGNC	ENSG00000166169				28	0	0	19	5	20.8333
MGEA5	0	genome.wustl.edu	37	10	103553732	103553732	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	103553732	103553732	G	A	SNP	MGEA5	ENST00000361464	human	ensembl	74_37	-1	known	nonsense	c.2008	p.Q670*	1.000	NULL	pfam_Beta-N-acetylglucosaminidase,superfamily_Glycoside_hydrolase_SF,superfamily_Acyl_CoA_acyltransferase	-	no_errors	MGEA5	HGNC	ENSG00000198408				346	0	0	234	82	25.9494
HPS6	0	genome.wustl.edu	37	10	103825824	103825824	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	103825824	103825824	G	T	SNP	HPS6	ENST00000299238	human	ensembl	74_37	+1	known	missense	c.593	p.R198I	0.006	pirsf_BLOC-2_complex_Hps6_subunit	pirsf_BLOC-2_complex_Hps6_subunit	-	no_errors	HPS6	HGNC	ENSG00000166189				41	0	0	45	4	8.16327
PPRC1	0	genome.wustl.edu	37	10	103900766	103900766	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	103900766	103900766	C	T	SNP	PPRC1	ENST00000278070	human	ensembl	74_37	+1	known	missense	c.2501	p.P834L	0.959	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	PPRC1	HGNC	ENSG00000148840				63	0	0	62	5	7.46269
PPRC1	0	genome.wustl.edu	37	10	103908403	103908403	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	103908403	103908403	A	G	SNP	PPRC1	ENST00000278070	human	ensembl	74_37	+1	known	silent	c.4569	p.S1523	0.013	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	PPRC1	HGNC	ENSG00000148840				184	0	0	163	17	9.44444
PPRC1	0	genome.wustl.edu	37	10	103908641	103908641	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	103908641	103908641	G	T	SNP	PPRC1	ENST00000278070	human	ensembl	74_37	+1	known	missense	c.4685	p.R1562M	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	PPRC1	HGNC	ENSG00000148840				71	0	0	56	19	25.3333
NOLC1	0	genome.wustl.edu	37	10	103918966	103918966	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	103918966	103918966	A	G	SNP	NOLC1	ENST00000603946	human	ensembl	74_37	+1	known	missense	c.137	p.K46R	0.467	NULL	pfscan_LisH_dimerisation	-	no_errors	NOLC1	HGNC	ENSG00000166197				227	0	0	233	14	5.66802
NOLC1	0	genome.wustl.edu	37	10	103920746	103920746	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	103920746	103920746	C	T	SNP	NOLC1	ENST00000405356	human	ensembl	74_37	+1	known	missense	c.1667	p.A556V	0.992	NULL	pfam_SRP40_C,pfscan_LisH_dimerisation	-	no_errors	NOLC1	HGNC	ENSG00000166197				68	0	0	90	6	6.25
GBF1	0	genome.wustl.edu	37	10	104118448	104118448	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	104118448	104118448	A	G	SNP	GBF1	ENST00000369983	human	ensembl	74_37	+1	known	missense	c.973	p.S325G	0.941	superfamily_ARM-type_fold	pfam_Sec7_dom,superfamily_Sec7_dom,superfamily_ARM-type_fold,smart_Sec7_dom,pfscan_Sec7_dom	-	no_errors	GBF1	HGNC	ENSG00000107862				43	0	0	46	4	8
ACTR1A	0	genome.wustl.edu	37	10	104247992	104247992	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	104247992	104247992	T	C	SNP	ACTR1A	ENST00000369905	human	ensembl	74_37	-1	known	missense	c.230	p.H77R	1.000	pfam_Actin-related,smart_Actin-related,prints_Actin-related	pfam_Actin-related,smart_Actin-related,prints_Actin-related	-	no_errors	ACTR1A	HGNC	ENSG00000138107				87	0	0	92	6	6.12245
ARL3	0	genome.wustl.edu	37	10	104445597	104445597	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	104445597	104445597	T	C	SNP	ARL3	ENST00000260746	human	ensembl	74_37	-1	known	silent	c.477	p.S159	0.915	pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_ARF,smart_Small_GTPase_SAR1,prints_Small_GTPase	pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,pfam_Gtr1_RagA,pfam_Gprotein_alpha_su,pfam_Small_GTPase,pfam_MIRO-like,pfam_EF_GTP-bd_dom,pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_Small_GTPase_ARF,smart_Small_GTPase_SAR1,prints_Small_GTPase_ARF/SAR,prints_Small_GTPase,prints_Gprotein_alpha_su,tigrfam_Small_GTP-bd_dom	-	no_errors	ARL3	HGNC	ENSG00000138175				78	0	0	72	11	13.253
WBP1L	0	genome.wustl.edu	37	10	104557771	104557771	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	104557771	104557771	A	G	SNP	WBP1L	ENST00000448841	human	ensembl	74_37	+1	known	missense	c.112	p.T38A	0.995	NULL	pfam_Uncharacterised_WW-bd	-	no_errors	WBP1L	HGNC	ENSG00000166272				111	0	0	82	5	5.74713
CNNM2	0	genome.wustl.edu	37	10	104679501	104679501	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	104679501	104679501	G	A	SNP	CNNM2	ENST00000369878	human	ensembl	74_37	+1	known	missense	c.1264	p.D422N	1.000	pfam_DUF21	pfam_DUF21,superfamily_cNMP-bd-like	-	no_errors	CNNM2	HGNC	ENSG00000148842				58	0	0	51	9	15
CNNM2	0	genome.wustl.edu	37	10	104836918	104836918	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	104836918	104836918	A	G	SNP	CNNM2	ENST00000369878	human	ensembl	74_37	+1	known	missense	c.2609	p.H870R	1.000	NULL	pfam_DUF21,superfamily_cNMP-bd-like	-	no_errors	CNNM2	HGNC	ENSG00000148842				46	0	0	61	6	8.95522
INA	0	genome.wustl.edu	37	10	105037837	105037837	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	105037837	105037837	A	C	SNP	INA	ENST00000369849	human	ensembl	74_37	+1	known	missense	c.869	p.K290T	1.000	pfam_IF,superfamily_Prefoldin	pfam_IF,pfam_Intermed_filament_DNA-bd,superfamily_Prefoldin	-	no_errors	INA	HGNC	ENSG00000148798				35	0	0	32	5	13.5135
PDCD11	0	genome.wustl.edu	37	10	105185263	105185263	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	105185263	105185263	C	T	SNP	PDCD11	ENST00000369797	human	ensembl	74_37	+1	known	nonsense	c.3286	p.R1096*	0.991	superfamily_NA-bd_OB-fold,smart_RNA-binding_domain_S1,pfscan_Rbsml_prot_S1_RNA-bd_dom	pfam_Rbsml_prot_S1_RNA-bd_dom,pfam_Suf,superfamily_NA-bd_OB-fold,smart_RNA-binding_domain_S1,smart_HAT,pfscan_TPR-contain_dom,pfscan_Rbsml_prot_S1_RNA-bd_dom,prints_Ribosomal_S1	-	no_errors	PDCD11	HGNC	ENSG00000148843				61	0	0	41	4	8.88889
PDCD11	0	genome.wustl.edu	37	10	105203692	105203692	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	105203692	105203692	C	T	SNP	PDCD11	ENST00000369797	human	ensembl	74_37	+1	known	silent	c.5145	p.N1715	1.000	smart_HAT,pfscan_TPR-contain_dom	pfam_Rbsml_prot_S1_RNA-bd_dom,pfam_Suf,superfamily_NA-bd_OB-fold,smart_RNA-binding_domain_S1,smart_HAT,pfscan_TPR-contain_dom,pfscan_Rbsml_prot_S1_RNA-bd_dom,prints_Ribosomal_S1	-	no_errors	PDCD11	HGNC	ENSG00000148843				136	0	0	129	17	11.6438
OBFC1	0	genome.wustl.edu	37	10	105677279	105677279	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	105677279	105677279	G	A	SNP	OBFC1	ENST00000224950	human	ensembl	74_37	-1	known	missense	c.74	p.A25V	1.000	pirsf_CST_STN1	pfam_CST_STN1_C,pfam_NA-bd_OB_tRNA,superfamily_NA-bd_OB-fold,pirsf_CST_STN1	-	no_errors	OBFC1	HGNC	ENSG00000107960				77	0	0	83	6	6.74157
SLK	0	genome.wustl.edu	37	10	105761204	105761204	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	105761204	105761204	T	C	SNP	SLK	ENST00000369755	human	ensembl	74_37	+1	known	silent	c.867	p.H289	1.000	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_PKK,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_UVR_dom,pfscan_Prot_kinase_dom	-	no_errors	SLK	HGNC	ENSG00000065613				59	0	0	42	9	17.6471
COL17A1	0	genome.wustl.edu	37	10	105799267	105799267	+	Silent	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	105799267	105799267	A	C	SNP	COL17A1	ENST00000353479	human	ensembl	74_37	-1	known	silent	c.2832	p.S944	0.035	NULL	pfam_Collagen	-	no_errors	COL17A1	HGNC	ENSG00000065618				70	0	0	80	7	8.04598
COL17A1	0	genome.wustl.edu	37	10	105815736	105815736	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	105815736	105815736	C	T	SNP	COL17A1	ENST00000353479	human	ensembl	74_37	-1	known	silent	c.1491	p.A497	0.003	NULL	pfam_Collagen	-	no_errors	COL17A1	HGNC	ENSG00000065618				113	1	0.877193	103	10	8.84956
COL17A1	0	genome.wustl.edu	37	10	105817937	105817937	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	105817937	105817937	T	A	SNP	COL17A1	ENST00000353479	human	ensembl	74_37	-1	known	missense	c.1234	p.T412S	0.004	NULL	pfam_Collagen	-	no_errors	COL17A1	HGNC	ENSG00000065618				75	0	0	60	8	11.7647
SORCS3	0	genome.wustl.edu	37	10	106602578	106602578	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	106602578	106602578	A	G	SNP	SORCS3	ENST00000369701	human	ensembl	74_37	+1	known	missense	c.656	p.D219G	1.000	smart_VPS10	pfam_PKD_dom,superfamily_PKD_dom,smart_VPS10,pfscan_PKD_dom	-	no_errors	SORCS3	HGNC	ENSG00000156395				115	1	0.862069	80	12	13.0435
XPNPEP1	0	genome.wustl.edu	37	10	111642211	111642211	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	111642211	111642211	A	G	SNP	XPNPEP1	ENST00000502935	human	ensembl	74_37	-1	known	silent	c.1020	p.A340	0.329	NULL	pfam_Pept_M24_structural-domain,pfam_Creatinase,superfamily_Pept_M24_structural-domain	-	no_errors	XPNPEP1	HGNC	ENSG00000108039				67	0	0	52	14	21.2121
ADD3	0	genome.wustl.edu	37	10	111876060	111876060	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	111876060	111876060	T	A	SNP	ADD3	ENST00000356080	human	ensembl	74_37	+1	known	missense	c.378	p.D126E	0.961	NULL	pfam_Aldolase_II/adducin_N,superfamily_Aldolase_II/adducin_N	-	no_errors	ADD3	HGNC	ENSG00000148700				97	0	0	83	8	8.79121
ADD3	0	genome.wustl.edu	37	10	111879279	111879279	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	111879279	111879279	C	T	SNP	ADD3	ENST00000356080	human	ensembl	74_37	+1	known	missense	c.917	p.A306V	1.000	pfam_Aldolase_II/adducin_N,superfamily_Aldolase_II/adducin_N	pfam_Aldolase_II/adducin_N,superfamily_Aldolase_II/adducin_N	-	no_errors	ADD3	HGNC	ENSG00000148700				275	0	0	199	21	9.54545
SMNDC1	0	genome.wustl.edu	37	10	112053968	112053968	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	112053968	112053968	T	G	SNP	SMNDC1	ENST00000369603	human	ensembl	74_37	-1	known	missense	c.657	p.K219N	1.000	NULL	pfam_Survival_motor_neuron,smart_Tudor,pfscan_Tudor	-	no_errors	SMNDC1	HGNC	ENSG00000119953				140	0	0	133	8	5.67376
DUSP5	0	genome.wustl.edu	37	10	112266745	112266745	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	112266745	112266745	C	T	SNP	DUSP5	ENST00000369583	human	ensembl	74_37	+1	known	missense	c.581	p.A194V	1.000	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pirsf_MKP,pfscan_Dual-sp_phosphatase_subgr_cat	pfam_Dual-sp_phosphatase_cat-dom,pfam_Rhodanese-like_dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,smart_Dual-sp_phosphatase_subgr_cat,smart_Tyr_Pase_cat,pirsf_MKP,pfscan_Rhodanese-like_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_MKP	-	no_errors	DUSP5	HGNC	ENSG00000138166				322	0	0	265	25	8.62069
SMC3	0	genome.wustl.edu	37	10	112349459	112349459	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	112349459	112349459	G	T	SNP	SMC3	ENST00000361804	human	ensembl	74_37	+1	known	nonsense	c.1402	p.E468*	1.000	pfam_RecF/RecN/SMC_N,superfamily_P-loop_NTPase,superfamily_SMC_hinge	pfam_RecF/RecN/SMC_N,pfam_SMC_hinge,superfamily_P-loop_NTPase,superfamily_SMC_hinge,smart_SMC_hinge	-	no_errors	SMC3	HGNC	ENSG00000108055				59	0	0	27	11	28.9474
SMC3	0	genome.wustl.edu	37	10	112357915	112357915	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	112357915	112357915	A	G	SNP	SMC3	ENST00000361804	human	ensembl	74_37	+1	known	missense	c.2135	p.D712G	1.000	pfam_RecF/RecN/SMC_N,superfamily_P-loop_NTPase	pfam_RecF/RecN/SMC_N,pfam_SMC_hinge,superfamily_P-loop_NTPase,superfamily_SMC_hinge,smart_SMC_hinge	-	no_errors	SMC3	HGNC	ENSG00000108055				215	1	0.462963	147	22	13.0178
SHOC2	0	genome.wustl.edu	37	10	112769025	112769025	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	112769025	112769025	A	T	SNP	SHOC2	ENST00000369452	human	ensembl	74_37	+1	known	missense	c.1304	p.N435I	1.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	SHOC2	HGNC	ENSG00000108061				56	0	0	42	5	10.6383
ADRA2A	0	genome.wustl.edu	37	10	112838304	112838304	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	112838304	112838304	C	T	SNP	ADRA2A	ENST00000280155	human	ensembl	74_37	+1	known	missense	c.550	p.L184F	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_ADRA2A_rcpt,prints_GPCR_Rhodpsn,prints_ADR_fam,prints_Musac_Ach_rcpt	-	no_errors	ADRA2A	HGNC	ENSG00000150594				24	0	0	20	3	13.0435
TCF7L2	0	genome.wustl.edu	37	10	114925317	114925317	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	114925317	114925317	A	G	SNP	TCF7L2	ENST00000355717	human	ensembl	74_37	+1	known	missense	c.1394	p.E465G	1.000	NULL	pfam_CTNNB1-bd_N,pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	TCF7L2	HGNC	ENSG00000148737				176	0	0	156	20	11.3636
NRAP	0	genome.wustl.edu	37	10	115372156	115372156	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	115372156	115372156	G	A	SNP	NRAP	ENST00000369358	human	ensembl	74_37	-1	known	missense	c.3359	p.A1120V	0.981	pfam_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_Znf_LIM,smart_Znf_LIM,smart_Nebulin_35r-motif,pfscan_Znf_LIM,pfscan_Nebulin_35r-motif,prints_Nebulin	-	no_errors	NRAP	HGNC	ENSG00000197893				73	0	0	54	7	11.4754
NRAP	0	genome.wustl.edu	37	10	115375543	115375543	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	115375543	115375543	C	A	SNP	NRAP	ENST00000369358	human	ensembl	74_37	-1	known	missense	c.3030	p.K1010N	1.000	pfam_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_Znf_LIM,smart_Znf_LIM,smart_Nebulin_35r-motif,pfscan_Znf_LIM,pfscan_Nebulin_35r-motif,prints_Nebulin	-	no_errors	NRAP	HGNC	ENSG00000197893				32	0	0	33	3	8.33333
NRAP	0	genome.wustl.edu	37	10	115411615	115411615	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	115411615	115411615	C	T	SNP	NRAP	ENST00000369358	human	ensembl	74_37	-1	known	missense	c.622	p.V208M	0.998	smart_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_Znf_LIM,smart_Znf_LIM,smart_Nebulin_35r-motif,pfscan_Znf_LIM,pfscan_Nebulin_35r-motif,prints_Nebulin	-	no_errors	NRAP	HGNC	ENSG00000197893				55	0	0	46	7	13.2075
DCLRE1A	0	genome.wustl.edu	37	10	115602112	115602112	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	115602112	115602112	T	C	SNP	DCLRE1A	ENST00000361384	human	ensembl	74_37	-1	known	silent	c.2655	p.K885	1.000	NULL	pfam_DRMBL	-	no_errors	DCLRE1A	HGNC	ENSG00000198924				157	1	0.632911	102	16	13.5593
NHLRC2	0	genome.wustl.edu	37	10	115639443	115639443	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	115639443	115639443	C	A	SNP	NHLRC2	ENST00000369301	human	ensembl	74_37	+1	known	missense	c.898	p.L300I	1.000	pfam_NHL_repeat	pfam_NHL_repeat,superfamily_Thioredoxin-like_fold,pfscan_NHL_repeat_subgr	-	no_errors	NHLRC2	HGNC	ENSG00000196865				90	0	0	60	7	10.4478
ADRB1	0	genome.wustl.edu	37	10	115804281	115804281	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	115804281	115804281	C	A	SNP	ADRB1	ENST00000369295	human	ensembl	74_37	+1	known	missense	c.390	p.F130L	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_5HT6_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_ADRB1_rcpt,prints_GPCR_Rhodpsn,prints_ADR_fam,prints_5HT6_rcpt	-	no_errors	ADRB1	HGNC	ENSG00000043591				105	1	0.943396	96	12	11.1111
VWA2	0	genome.wustl.edu	37	10	116038533	116038533	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	116038533	116038533	G	A	SNP	VWA2	ENST00000392982	human	ensembl	74_37	+1	known	silent	c.756	p.E252	0.999	NULL	pfam_VWF_A,pfam_EG-like_dom,pfam_EGF_extracell,smart_VWF_A,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_VWF_A	-	no_errors	VWA2	HGNC	ENSG00000165816				77	0	0	100	7	6.54206
VWA2	0	genome.wustl.edu	37	10	116046101	116046101	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	116046101	116046101	C	T	SNP	VWA2	ENST00000392982	human	ensembl	74_37	+1	known	silent	c.1401	p.H467	0.001	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_EG-like_dom,pfam_EGF_extracell,smart_VWF_A,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_VWF_A	-	no_errors	VWA2	HGNC	ENSG00000165816				89	0	0	94	11	10.4762
VWA2	0	genome.wustl.edu	37	10	116049204	116049204	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	116049204	116049204	A	G	SNP	VWA2	ENST00000392982	human	ensembl	74_37	+1	known	missense	c.2078	p.D693G	1.000	smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_EG-like_dom,pfam_EGF_extracell,smart_VWF_A,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_VWF_A	-	no_errors	VWA2	HGNC	ENSG00000165816				50	0	0	59	4	6.34921
ABLIM1	0	genome.wustl.edu	37	10	116245123	116245123	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	116245123	116245123	C	T	SNP	ABLIM1	ENST00000369266	human	ensembl	74_37	-1	known	missense	c.110	p.R37H	0.020	NULL	pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Villin_headpiece,pfscan_Villin_headpiece	-	no_errors	ABLIM1	HGNC	ENSG00000099204				27	0	0	17	6	26.087
FAM160B1	0	genome.wustl.edu	37	10	116595304	116595304	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	116595304	116595304	G	A	SNP	FAM160B1	ENST00000369248	human	ensembl	74_37	+1	known	silent	c.303	p.P101	0.995	pfam_RetinoicA-induced_16-like	pfam_RetinoicA-induced_16-like	-	no_errors	FAM160B1	HGNC	ENSG00000151553				110	0	0	86	12	12.2449
FAM160B1	0	genome.wustl.edu	37	10	116608429	116608429	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	116608429	116608429	A	G	SNP	FAM160B1	ENST00000369248	human	ensembl	74_37	+1	known	missense	c.1736	p.D579G	1.000	NULL	pfam_RetinoicA-induced_16-like	-	no_errors	FAM160B1	HGNC	ENSG00000151553				77	0	0	59	5	7.8125
ATRNL1	0	genome.wustl.edu	37	10	117154195	117154195	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	117154195	117154195	A	T	SNP	ATRNL1	ENST00000355044	human	ensembl	74_37	+1	known	missense	c.3202	p.I1068F	0.992	smart_EGF_laminin	pfam_Kelch_1,pfam_Kelch_2,pfam_Plexin_repeat,pfam_CUB_dom,pfam_EGF_extracell,superfamily_C-type_lectin_fold,superfamily_CUB_dom,superfamily_Plexin-like_fold,smart_EG-like_dom,smart_CUB_dom,smart_Plexin-like_fold,smart_C-type_lectin,smart_EGF_laminin,pfscan_CUB_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_C-type_lectin	-	no_errors	ATRNL1	HGNC	ENSG00000107518				79	0	0	45	7	13.4615
PNLIPRP1	0	genome.wustl.edu	37	10	118368620	118368620	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	118368620	118368620	C	T	SNP	PNLIPRP1	ENST00000358834	human	ensembl	74_37	+1	known	missense	c.1396	p.P466S	0.986	pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,smart_PLAT/LH2_dom,pirsf_Lipoprotein_lipase_LIPH,pfscan_PLAT/LH2_dom,prints_Lipase_panc	pfam_Lipase_N,pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,smart_PLAT/LH2_dom,pirsf_Lipoprotein_lipase_LIPH,pfscan_PLAT/LH2_dom,prints_Lipase_panc,prints_Lipase	-	no_errors	PNLIPRP1	HGNC	ENSG00000187021				50	0	0	45	4	8.16327
PNLIPRP2	0	genome.wustl.edu	37	10	118380487	118380487	+	RNA	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	118380487	118380487	C	T	SNP	PNLIPRP2	ENST00000298771	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	PNLIPRP2	HGNC	ENSG00000165862				19	0	0	18	3	14.2857
PNLIPRP2	0	genome.wustl.edu	37	10	118394418	118394418	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	118394418	118394418	A	G	SNP	PNLIPRP2	ENST00000537242	human	ensembl	74_37	+1	known	missense	c.884	p.N295S	0.044	pirsf_Lipoprotein_lipase_LIPH,pfam_Lipase_N,prints_Lipase	pirsf_Lipoprotein_lipase_LIPH,pfam_Lipase_N,pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,smart_PLAT/LH2_dom,prints_Lipase_panc,prints_Lipase,pfscan_PLAT/LH2_dom	-	no_errors	PNLIPRP2	HGNC	ENSG00000165862				67	0	0	45	4	8.16327
HSPA12A	0	genome.wustl.edu	37	10	118439134	118439134	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	118439134	118439134	C	T	SNP	HSPA12A	ENST00000369209	human	ensembl	74_37	-1	known	missense	c.1166	p.R389H	1.000	NULL	NULL	-	no_errors	HSPA12A	HGNC	ENSG00000165868				109	0	0	99	11	10
KIAA1598	0	genome.wustl.edu	37	10	118719729	118719729	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	118719729	118719729	A	G	SNP	KIAA1598	ENST00000392903	human	ensembl	74_37	-1	known	missense	c.185	p.V62A	1.000	NULL	superfamily_Adenylate_cyclase-assoc_CAP_N	-	no_errors	KIAA1598	HGNC	ENSG00000187164				49	0	0	36	4	10
KCNK18	0	genome.wustl.edu	37	10	118969029	118969029	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	118969029	118969029	T	G	SNP	KCNK18	ENST00000334549	human	ensembl	74_37	+1	known	missense	c.374	p.V125G	0.311	pfam_2pore_dom_K_chnl_dom,prints_2pore_dom_K_chnl	pfam_2pore_dom_K_chnl_dom,prints_2pore_dom_K_chnl	-	no_errors	KCNK18	HGNC	ENSG00000186795				333	0	0	314	18	5.42169
RAB11FIP2	0	genome.wustl.edu	37	10	119799972	119799972	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	119799972	119799972	T	C	SNP	RAB11FIP2	ENST00000369199	human	ensembl	74_37	-1	known	missense	c.458	p.D153G	1.000	superfamily_C2_dom	pfam_Rab-bd_FIP-RBD,pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	RAB11FIP2	HGNC	ENSG00000107560				96	0	0	57	4	6.55738
EIF3A	0	genome.wustl.edu	37	10	120810101	120810101	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	120810101	120810101	C	T	SNP	EIF3A	ENST00000369144	human	ensembl	74_37	-1	known	missense	c.2405	p.R802H	1.000	NULL	pfam_PCI_dom,smart_PCI_dom	-	no_errors	EIF3A	HGNC	ENSG00000107581				273	1	0.364964	251	17	6.34328
EIF3A	0	genome.wustl.edu	37	10	120818859	120818859	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	120818859	120818859	A	G	SNP	EIF3A	ENST00000369144	human	ensembl	74_37	-1	known	silent	c.1494	p.N498	1.000	smart_PCI_dom	pfam_PCI_dom,smart_PCI_dom	-	no_errors	EIF3A	HGNC	ENSG00000107581				92	0	0	71	7	8.97436
INPP5F	0	genome.wustl.edu	37	10	121582627	121582627	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	121582627	121582627	C	T	SNP	INPP5F	ENST00000361976	human	ensembl	74_37	+1	known	nonsense	c.2077	p.R693*	1.000	pfam_Inositol_phosphatase	pfam_Syja_N,pfam_Inositol_phosphatase,pfscan_Syja_N	-	no_errors	INPP5F	HGNC	ENSG00000198825				89	0	0	77	7	8.33333
FGFR2	0	genome.wustl.edu	37	10	123247527	123247527	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	123247527	123247527	T	C	SNP	FGFR2	ENST00000457416	human	ensembl	74_37	-1	known	missense	c.1967	p.D656G	1.000	pirsf_FGF_rcpt_fam,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_FGF_rcpt_fam,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	FGFR2	HGNC	ENSG00000066468				192	0	0	150	17	10.1796
TACC2	0	genome.wustl.edu	37	10	123810012	123810012	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	123810012	123810012	A	G	SNP	TACC2	ENST00000334433	human	ensembl	74_37	+1	known	missense	c.93	p.I31M	0.000	NULL	pfam_TACC	-	no_errors	TACC2	HGNC	ENSG00000138162				63	0	0	41	6	12.766
HTRA1	0	genome.wustl.edu	37	10	124249068	124249068	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	124249068	124249068	G	A	SNP	HTRA1	ENST00000368984	human	ensembl	74_37	+1	known	missense	c.703	p.G235S	1.000	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,prints_Peptidase_S1C	pfam_Peptidase_S1,pfam_PDZ,pfam_Kazal_dom,pfam_IGFBP-like,superfamily_Trypsin-like_Pept_dom,superfamily_PDZ,smart_IGFBP-like,smart_Kazal_dom,smart_PDZ,pfscan_PDZ,prints_Peptidase_S1C	-	no_errors	HTRA1	HGNC	ENSG00000166033				77	0	0	65	12	15.5844
DMBT1	0	genome.wustl.edu	37	10	124345846	124345846	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	124345846	124345846	G	A	SNP	DMBT1	ENST00000338354	human	ensembl	74_37	+1	known	missense	c.1730	p.G577D	0.003	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR	pfam_SRCR,pfam_CUB_dom,pfam_ZP_dom,superfamily_Srcr_rcpt-rel,superfamily_CUB_dom,smart_Srcr_rcpt-rel,smart_CUB_dom,smart_ZP_dom,pfscan_CUB_dom,pfscan_SRCR,pfscan_ZP_dom,prints_SRCR	-	no_errors	DMBT1	HGNC	ENSG00000187908				69	0	0	49	14	22.2222
DMBT1	0	genome.wustl.edu	37	10	124358514	124358514	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	124358514	124358514	C	T	SNP	DMBT1	ENST00000338354	human	ensembl	74_37	+1	known	missense	c.3181	p.R1061C	0.000	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR	pfam_SRCR,pfam_CUB_dom,pfam_ZP_dom,superfamily_Srcr_rcpt-rel,superfamily_CUB_dom,smart_Srcr_rcpt-rel,smart_CUB_dom,smart_ZP_dom,pfscan_CUB_dom,pfscan_SRCR,pfscan_ZP_dom,prints_SRCR	-	no_errors	DMBT1	HGNC	ENSG00000187908				159	0	0	142	19	11.8012
DMBT1	0	genome.wustl.edu	37	10	124402748	124402748	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	124402748	124402748	G	A	SNP	DMBT1	ENST00000338354	human	ensembl	74_37	+1	known	missense	c.7076	p.R2359H	0.980	pfam_ZP_dom,smart_ZP_dom,pfscan_ZP_dom	pfam_SRCR,pfam_CUB_dom,pfam_ZP_dom,superfamily_Srcr_rcpt-rel,superfamily_CUB_dom,smart_Srcr_rcpt-rel,smart_CUB_dom,smart_ZP_dom,pfscan_CUB_dom,pfscan_SRCR,pfscan_ZP_dom,prints_SRCR	-	no_errors	DMBT1	HGNC	ENSG00000187908				126	0	0	107	20	15.748
C10orf88	0	genome.wustl.edu	37	10	124712522	124712522	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	124712522	124712522	T	C	SNP	C10orf88	ENST00000481909	human	ensembl	74_37	-1	known	missense	c.191	p.N64S	0.001	NULL	NULL	-	no_errors	C10orf88	HGNC	ENSG00000119965				33	0	0	28	4	12.5
IKZF5	0	genome.wustl.edu	37	10	124753312	124753312	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	124753312	124753312	T	C	SNP	IKZF5	ENST00000368886	human	ensembl	74_37	-1	known	missense	c.1244	p.Q415R	1.000	smart_Znf_C2H2-like	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	IKZF5	HGNC	ENSG00000095574				117	0	0	80	7	8.04598
IKZF5	0	genome.wustl.edu	37	10	124758027	124758027	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	124758027	124758027	C	T	SNP	IKZF5	ENST00000368886	human	ensembl	74_37	-1	known	missense	c.115	p.A39T	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	IKZF5	HGNC	ENSG00000095574				82	0	0	64	6	8.57143
HMX3	0	genome.wustl.edu	37	10	124897045	124897045	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	124897045	124897045	A	T	SNP	HMX3	ENST00000357878	human	ensembl	74_37	+1	known	missense	c.872	p.E291V	1.000	superfamily_Homeodomain-like	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	HMX3	HGNC	ENSG00000188620				49	0	0	33	4	10.8108
ZRANB1	0	genome.wustl.edu	37	10	126662901	126662901	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	126662901	126662901	G	A	SNP	ZRANB1	ENST00000359653	human	ensembl	74_37	+1	known	missense	c.1361	p.G454D	1.000	pfam_OTU,pfscan_OTU	pfam_OTU,pfam_Znf_RanBP2,smart_Znf_RanBP2,pfscan_OTU,pfscan_Znf_RanBP2	-	no_errors	ZRANB1	HGNC	ENSG00000019995				112	1	0.884956	94	5	5.05051
CTBP2	0	genome.wustl.edu	37	10	126683094	126683094	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	126683094	126683094	G	A	SNP	CTBP2	ENST00000309035	human	ensembl	74_37	-1	known	missense	c.2344	p.H782Y	1.000	pfam_D-isomer_2_OHA_DH_NAD-bd,pfam_D-isomer_2_OHA_DH_cat_dom	pfam_D-isomer_2_OHA_DH_NAD-bd,pfam_D-isomer_2_OHA_DH_cat_dom	-	no_errors	CTBP2	HGNC	ENSG00000175029				59	0	0	42	14	25
CTBP2	0	genome.wustl.edu	37	10	126716040	126716040	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	126716040	126716040	C	A	SNP	CTBP2	ENST00000309035	human	ensembl	74_37	-1	known	missense	c.289	p.A97S	0.996	NULL	pfam_D-isomer_2_OHA_DH_NAD-bd,pfam_D-isomer_2_OHA_DH_cat_dom	-	no_errors	CTBP2	HGNC	ENSG00000175029				75	0	0	70	20	22.2222
C10orf137	0	genome.wustl.edu	37	10	127422661	127422661	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	127422661	127422661	T	A	SNP	C10orf137	ENST00000356792	human	ensembl	74_37	+1	known	missense	c.1406	p.M469K	1.000	NULL	NULL	-	no_errors	C10orf137	HGNC	ENSG00000107938				109	0	0	70	12	14.6341
MMP21	0	genome.wustl.edu	37	10	127460903	127460903	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	127460903	127460903	A	C	SNP	MMP21	ENST00000368808	human	ensembl	74_37	-1	known	missense	c.863	p.V288G	1.000	pirsf_Pept_M10A_Metazoans,pfam_Pept_M10_metallopeptidase,smart_Peptidase_Metallo,prints_Pept_M10A	pirsf_Pept_M10A_Metazoans,pfam_Pept_M10_metallopeptidase,pfam_Hemopexin-like_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin-like_repeat,prints_Pept_M10A	-	no_errors	MMP21	HGNC	ENSG00000154485				53	0	0	65	7	9.72222
ADAM12	0	genome.wustl.edu	37	10	127789653	127789653	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	127789653	127789653	G	A	SNP	ADAM12	ENST00000368679	human	ensembl	74_37	-1	known	missense	c.908	p.A303V	1.000	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Peptidase_M12B,pfam_ADAM_Cys-rich,pfam_Peptidase_M12B_N,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM12	HGNC	ENSG00000148848				59	0	0	64	9	12.3288
DOCK1	0	genome.wustl.edu	37	10	128797654	128797654	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	128797654	128797654	A	T	SNP	DOCK1	ENST00000280333	human	ensembl	74_37	+1	known	missense	c.804	p.L268F	1.000	NULL	pfam_DOCK_C,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,superfamily_Cyt_c-like_dom,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK1	HGNC	ENSG00000150760				72	0	0	53	10	15.873
DOCK1	0	genome.wustl.edu	37	10	128908583	128908583	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	128908583	128908583	T	C	SNP	DOCK1	ENST00000280333	human	ensembl	74_37	+1	known	missense	c.2525	p.I842T	1.000	superfamily_ARM-type_fold	pfam_DOCK_C,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,superfamily_Cyt_c-like_dom,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK1	HGNC	ENSG00000150760				50	0	0	28	3	9.67742
FAM196A	0	genome.wustl.edu	37	10	128974382	128974382	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	128974382	128974382	C	T	SNP	FAM196A	ENST00000522781	human	ensembl	74_37	-1	known	missense	c.278	p.R93H	0.995	NULL	NULL	-	no_errors	FAM196A	HGNC	ENSG00000188916				79	0	0	57	9	13.6364
MKI67	0	genome.wustl.edu	37	10	129901497	129901497	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	129901497	129901497	C	T	SNP	MKI67	ENST00000368654	human	ensembl	74_37	-1	known	silent	c.8607	p.T2869	0.000	pfam_K167R	pfam_K167R,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	MKI67	HGNC	ENSG00000148773				173	0	0	170	12	6.59341
MKI67	0	genome.wustl.edu	37	10	129901518	129901518	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	129901518	129901518	T	C	SNP	MKI67	ENST00000368654	human	ensembl	74_37	-1	known	silent	c.8586	p.T2862	0.000	pfam_K167R	pfam_K167R,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	MKI67	HGNC	ENSG00000148773				162	0	0	153	9	5.55556
MKI67	0	genome.wustl.edu	37	10	129905845	129905845	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	129905845	129905845	G	C	SNP	MKI67	ENST00000368654	human	ensembl	74_37	-1	known	missense	c.4259	p.T1420R	0.000	pfam_K167R	pfam_K167R,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	MKI67	HGNC	ENSG00000148773				312	0	0	267	64	19.3353
MKI67	0	genome.wustl.edu	37	10	129907158	129907158	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	129907158	129907158	G	A	SNP	MKI67	ENST00000368654	human	ensembl	74_37	-1	known	silent	c.2946	p.G982	0.006	NULL	pfam_K167R,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	MKI67	HGNC	ENSG00000148773				333	0	0	316	28	8.13953
OPTN	0	genome.wustl.edu	37	10	13164419	13164419	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	13164419	13164419	T	C	SNP	OPTN	ENST00000263036	human	ensembl	74_37	+1	known	missense	c.814	p.S272P	0.016	NULL	pfam_NEMO_N	-	no_errors	OPTN	HGNC	ENSG00000123240				62	0	0	32	2	5.88235
EBF3	0	genome.wustl.edu	37	10	131761907	131761907	+	Silent	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	131761907	131761907	G	T	SNP	EBF3	ENST00000355311	human	ensembl	74_37	-1	known	silent	c.126	p.A42	1.000	NULL	pfam_IPT,superfamily_Ig_E-set,smart_IPT	-	no_errors	EBF3	HGNC	ENSG00000108001				24	0	0	34	3	8.10811
OPTN	0	genome.wustl.edu	37	10	13178916	13178916	+	RNA	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	13178916	13178916	C	T	SNP	OPTN	ENST00000469025	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.747	-	-	-	no_errors	OPTN	HGNC	ENSG00000123240				86	0	0	71	8	10.1266
MCM10	0	genome.wustl.edu	37	10	13224949	13224949	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	13224949	13224949	T	G	SNP	MCM10	ENST00000484800	human	ensembl	74_37	+1	known	missense	c.950	p.I317R	1.000	NULL	pfam_Rep_factor_Mcm10,pfam_Znf_Mcm10/DnaG	-	no_errors	MCM10	HGNC	ENSG00000065328				72	0	0	72	5	6.49351
JAKMIP3	0	genome.wustl.edu	37	10	133955535	133955535	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	133955535	133955535	G	A	SNP	JAKMIP3	ENST00000298622	human	ensembl	74_37	+1	known	missense	c.1585	p.A529T	1.000	NULL	NULL	-	no_errors	JAKMIP3	HGNC	ENSG00000188385				10	0	0	7	3	30
DPYSL4	0	genome.wustl.edu	37	10	134017367	134017367	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	134017367	134017367	C	T	SNP	DPYSL4	ENST00000338492	human	ensembl	74_37	+1	known	silent	c.1563	p.S521	1.000	NULL	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	-	no_errors	DPYSL4	HGNC	ENSG00000151640				96	0	0	117	9	7.14286
TTC40	0	genome.wustl.edu	37	10	134755109	134755109	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	134755109	134755109	A	G	SNP	TTC40	ENST00000368582	human	ensembl	74_37	-1	known	missense	c.292	p.S98P	0.888	NULL	NULL	-	no_errors	TTC40	HGNC	ENSG00000171811				47	0	0	54	5	8.47458
BEND7	0	genome.wustl.edu	37	10	13481460	13481460	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	13481460	13481460	C	T	SNP	BEND7	ENST00000396900	human	ensembl	74_37	-1	known	silent	c.1272	p.G424	0.002	NULL	pfam_BEN_domain	-	no_errors	BEND7	HGNC	ENSG00000165626				42	0	0	53	6	10.1695
GPR123	0	genome.wustl.edu	37	10	134898389	134898389	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	134898389	134898389	G	A	SNP	GPR123	ENST00000607359	human	ensembl	74_37	+1	putative	missense	c.1451	p.G484E	0.000	NULL	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	-	no_errors	GPR123	HGNC	ENSG00000197177				45	0	0	40	13	24.5283
ADAM8	0	genome.wustl.edu	37	10	135086342	135086342	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	135086342	135086342	A	G	SNP	ADAM8	ENST00000445355	human	ensembl	74_37	-1	known	missense	c.665	p.V222A	0.010	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_Blood-coag_inhib_Disintegrin,pfam_ADAM_Cys-rich,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM8	HGNC	ENSG00000151651				25	0	0	21	3	12.5
FAM107B	0	genome.wustl.edu	37	10	14572484	14572484	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	14572484	14572484	T	A	SNP	FAM107B	ENST00000181796	human	ensembl	74_37	-1	known	missense	c.500	p.D167V	0.901	NULL	pfam_DUF1151	-	no_errors	FAM107B	HGNC	ENSG00000065809				109	0	0	83	7	7.77778
NMT2	0	genome.wustl.edu	37	10	15210574	15210574	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	15210574	15210574	C	A	SNP	NMT2	ENST00000378165	human	ensembl	74_37	-1	known	missense	c.38	p.S13I	1.000	NULL	pfam_MyristoylCoA_TrFase_C,pfam_MyristoylCoA_TrFase_N,superfamily_Acyl_CoA_acyltransferase,pirsf_MyristoylCoA_TrFase	-	no_errors	NMT2	HGNC	ENSG00000152465				97	0	0	85	5	5.55556
FAM171A1	0	genome.wustl.edu	37	10	15256309	15256309	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	15256309	15256309	G	A	SNP	FAM171A1	ENST00000378116	human	ensembl	74_37	-1	known	silent	c.1278	p.S426	1.000	pfam_Uncharacterised_FAM171	pfam_Uncharacterised_FAM171	-	no_errors	FAM171A1	HGNC	ENSG00000148468				76	0	0	75	13	14.7727
FAM188A	0	genome.wustl.edu	37	10	15883459	15883459	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	15883459	15883459	A	G	SNP	FAM188A	ENST00000277632	human	ensembl	74_37	-1	known	silent	c.375	p.S125	0.993	NULL	NULL	-	no_errors	FAM188A	HGNC	ENSG00000148481				76	0	0	50	8	13.7931
PTER	0	genome.wustl.edu	37	10	16528542	16528542	+	Silent	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	16528542	16528542	A	T	SNP	PTER	ENST00000298942	human	ensembl	74_37	+1	known	silent	c.624	p.A208	0.575	pfam_Aryldialkylphosphatase,pfam_TatD_family	pfam_Aryldialkylphosphatase,pfam_TatD_family	-	no_errors	PTER	HGNC	ENSG00000165983				102	0	0	77	8	9.41176
TRDMT1	0	genome.wustl.edu	37	10	17195517	17195517	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	17195517	17195517	G	A	SNP	TRDMT1	ENST00000377799	human	ensembl	74_37	-1	known	missense	c.1064	p.P355L	1.000	pfam_C5_MeTfrase,tigrfam_C5_MeTfrase	pfam_C5_MeTfrase,prints_C5_MeTfrase,tigrfam_C5_MeTfrase	-	no_errors	TRDMT1	HGNC	ENSG00000107614				66	0	0	40	5	11.1111
ADARB2	0	genome.wustl.edu	37	10	1779250	1779250	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	1779250	1779250	C	T	SNP	ADARB2	ENST00000381312	human	ensembl	74_37	-1	known	missense	c.95	p.R32Q	1.000	NULL	pfam_A_deamin,pfam_dsRNA-bd_dom,smart_dsRNA-bd_dom,smart_A_deamin,pfscan_dsRNA-bd_dom,pfscan_A_deamin	-	no_errors	ADARB2	HGNC	ENSG00000185736				79	0	0	62	24	27.907
101928757	0	genome.wustl.edu	37	10	17865224	17865224	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	17865224	17865224	T	G	SNP	101928757	ENST00000457317	human	ensembl	74_37	+1	known	missense	c.213	p.F71L	0.651	pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	pfam_C-type_lectin,pfam_FN_type2_col-bd,pfam_Ricin_B_lectin,pfam_Herpes_UL45-like,superfamily_Ricin_B_lectin,superfamily_C-type_lectin_fold,superfamily_Kringle-like,smart_Ricin_B_lectin,smart_FN_type2_col-bd,smart_C-type_lectin,pfscan_FN_type2_col-bd,pfscan_C-type_lectin,pfscan_Ricin_B_lectin,prints_AntifreezeII	-	no_errors	MRC1L1	Clone_based_vega_gene	ENSG00000183748				202	0	0	178	22	11
101928757	0	genome.wustl.edu	37	10	17891615	17891615	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	17891615	17891615	T	A	SNP	101928757	ENST00000457317	human	ensembl	74_37	+1	known	missense	c.1096	p.W366R	1.000	pfam_Herpes_UL45-like,superfamily_C-type_lectin_fold,smart_C-type_lectin,prints_AntifreezeII	pfam_C-type_lectin,pfam_FN_type2_col-bd,pfam_Ricin_B_lectin,pfam_Herpes_UL45-like,superfamily_Ricin_B_lectin,superfamily_C-type_lectin_fold,superfamily_Kringle-like,smart_Ricin_B_lectin,smart_FN_type2_col-bd,smart_C-type_lectin,pfscan_FN_type2_col-bd,pfscan_C-type_lectin,pfscan_Ricin_B_lectin,prints_AntifreezeII	-	no_errors	MRC1L1	Clone_based_vega_gene	ENSG00000183748				183	0	0	122	9	6.87023
CACNB2	0	genome.wustl.edu	37	10	18825082	18825082	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	18825082	18825082	A	G	SNP	CACNB2	ENST00000324631	human	ensembl	74_37	+1	known	missense	c.1259	p.N420S	1.000	pfam_GK/Ca_channel_bsu,superfamily_P-loop_NTPase,smart_GK/Ca_channel_bsu,prints_VDCC_L_bsu	pfam_GK/Ca_channel_bsu,pfam_VDCC_L_bsu,superfamily_P-loop_NTPase,superfamily_SH3_domain,smart_SH3_domain,smart_GK/Ca_channel_bsu,pfscan_SH3_domain,prints_VDCC_L_bsu,prints_VDCC_L_b2su	-	no_errors	CACNB2	HGNC	ENSG00000165995				47	0	0	36	6	14.2857
CACNB2	0	genome.wustl.edu	37	10	18827115	18827115	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	18827115	18827115	T	C	SNP	CACNB2	ENST00000324631	human	ensembl	74_37	+1	known	missense	c.1309	p.F437L	1.000	pfam_GK/Ca_channel_bsu,superfamily_P-loop_NTPase,smart_GK/Ca_channel_bsu	pfam_GK/Ca_channel_bsu,pfam_VDCC_L_bsu,superfamily_P-loop_NTPase,superfamily_SH3_domain,smart_SH3_domain,smart_GK/Ca_channel_bsu,pfscan_SH3_domain,prints_VDCC_L_bsu,prints_VDCC_L_b2su	-	no_errors	CACNB2	HGNC	ENSG00000165995				139	0	0	92	9	8.91089
NSUN6	0	genome.wustl.edu	37	10	18834947	18834947	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	18834947	18834947	G	A	SNP	NSUN6	ENST00000377304	human	ensembl	74_37	-1	known	missense	c.1325	p.A442V	0.985	NULL	pfam_Fmu/NOL1/Nop2p,pfam_rRNA_MeTrfase_FtsJ_dom,pfam_PUA,superfamily_PUA-like_domain,pfscan_PUA,prints_RCMT	-	no_errors	NSUN6	HGNC	ENSG00000241058				268	0	0	196	13	6.2201
NEBL	0	genome.wustl.edu	37	10	21309122	21309122	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	21309122	21309122	G	A	SNP	NEBL	ENST00000417816	human	ensembl	74_37	-1	known	missense	c.173	p.P58L	1.000	pfam_Znf_LIM,pfscan_Znf_LIM	pfam_Nebulin_35r-motif,pfam_Znf_LIM,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Znf_LIM,smart_Nebulin_35r-motif,smart_SH3_domain,pfscan_Znf_LIM,pfscan_Nebulin_35r-motif,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	NEBL	HGNC	ENSG00000078114				111	0	0	88	16	15.3846
DNAJC1	0	genome.wustl.edu	37	10	22208825	22208825	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	22208825	22208825	T	C	SNP	DNAJC1	ENST00000376980	human	ensembl	74_37	-1	known	missense	c.571	p.K191E	1.000	NULL	pfam_DnaJ_domain,pfam_SANT/Myb,superfamily_DnaJ_domain,superfamily_Homeodomain-like,smart_DnaJ_domain,smart_SANT/Myb,pfscan_Myb-like_dom,pfscan_DnaJ_domain,prints_DnaJ_domain	-	no_errors	DNAJC1	HGNC	ENSG00000136770				170	0	0	119	16	11.8519
SPAG6	0	genome.wustl.edu	37	10	22676751	22676751	+	Splice_Site	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	22676751	22676751	G	A	SNP	SPAG6	ENST00000376603	human	ensembl	74_37	+1	known	splice_site	c.907-1	e6-1	1.000	-	-	-	no_errors	SPAG6	HGNC	ENSG00000077327				67	0	0	56	4	6.66667
KIAA1217	0	genome.wustl.edu	37	10	24813641	24813641	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	24813641	24813641	T	A	SNP	KIAA1217	ENST00000376454	human	ensembl	74_37	+1	known	missense	c.2846	p.F949Y	1.000	NULL	pfam_AIP3_C	-	no_errors	KIAA1217	HGNC	ENSG00000120549				78	0	0	48	11	18.6441
ARHGAP21	0	genome.wustl.edu	37	10	24908746	24908746	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	24908746	24908746	G	A	SNP	ARHGAP21	ENST00000396432	human	ensembl	74_37	-1	known	missense	c.2078	p.A693V	0.000	NULL	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_PDZ,superfamily_Rho_GTPase_activation_prot,superfamily_PDZ,smart_PDZ,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom	-	no_errors	ARHGAP21	HGNC	ENSG00000107863				75	0	0	51	6	10.5263
ARHGAP21	0	genome.wustl.edu	37	10	24909193	24909193	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	24909193	24909193	G	T	SNP	ARHGAP21	ENST00000396432	human	ensembl	74_37	-1	known	missense	c.1631	p.P544H	0.869	NULL	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_PDZ,superfamily_Rho_GTPase_activation_prot,superfamily_PDZ,smart_PDZ,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom	-	no_errors	ARHGAP21	HGNC	ENSG00000107863				116	1	0.854701	109	10	8.40336
PRTFDC1	0	genome.wustl.edu	37	10	25226286	25226286	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	25226286	25226286	G	A	SNP	PRTFDC1	ENST00000320152	human	ensembl	74_37	-1	known	silent	c.166	p.L56	0.997	pfam_PRibTrfase_dom,tigrfam_Hxn_phspho_trans	pfam_PRibTrfase_dom,tigrfam_Hxn_phspho_trans	-	no_errors	PRTFDC1	HGNC	ENSG00000099256				75	0	0	55	6	9.83607
PDSS1	0	genome.wustl.edu	37	10	27035443	27035443	+	RNA	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	27035443	27035443	G	A	SNP	PDSS1	ENST00000470978	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	PDSS1	HGNC	ENSG00000148459				35	0	0	24	12	33.3333
ANKRD26	0	genome.wustl.edu	37	10	27324093	27324093	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	27324093	27324093	G	A	SNP	ANKRD26	ENST00000436985	human	ensembl	74_37	-1	known	missense	c.3334	p.R1112W	0.000	NULL	pfam_DUF3496,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_Polyketide_synth_docking,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD26	HGNC	ENSG00000107890				217	0	0	134	32	19.2771
YME1L1	0	genome.wustl.edu	37	10	27409429	27409429	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	27409429	27409429	C	A	SNP	YME1L1	ENST00000326799	human	ensembl	74_37	-1	known	missense	c.1517	p.R506M	1.000	superfamily_P-loop_NTPase,smart_AAA+_ATPase,tigrfam_FtsH	pfam_Peptidase_M41,pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase,tigrfam_FtsH	-	no_errors	YME1L1	HGNC	ENSG00000136758				113	0	0	58	7	10.7692
ACBD5	0	genome.wustl.edu	37	10	27504523	27504523	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	27504523	27504523	T	C	SNP	ACBD5	ENST00000375888	human	ensembl	74_37	-1	known	missense	c.904	p.T302A	1.000	pirsf_M-assoc_diazepam-bd-inh	pfam_Acyl-CoA-binding_protein,superfamily_Acyl-CoA-binding_protein,pirsf_M-assoc_diazepam-bd-inh,prints_Acyl-CoA-binding_protein	-	no_errors	ACBD5	HGNC	ENSG00000107897				45	0	0	21	2	8.69565
ACBD5	0	genome.wustl.edu	37	10	27512277	27512277	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	27512277	27512277	A	T	SNP	ACBD5	ENST00000375888	human	ensembl	74_37	-1	known	missense	c.474	p.D158E	0.983	pirsf_M-assoc_diazepam-bd-inh	pfam_Acyl-CoA-binding_protein,superfamily_Acyl-CoA-binding_protein,pirsf_M-assoc_diazepam-bd-inh,prints_Acyl-CoA-binding_protein	-	no_errors	ACBD5	HGNC	ENSG00000107897				93	0	0	59	7	10.6061
LRRC37A6P	0	genome.wustl.edu	37	10	27537800	27537800	+	RNA	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	27537800	27537800	G	T	SNP	LRRC37A6P	ENST00000284414	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.283	-	-	-	no_errors	LRRC37A6P	HGNC	ENSG00000230445				133	0	0	133	7	5
LRRC37A6P	0	genome.wustl.edu	37	10	27538168	27538168	+	RNA	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	27538168	27538168	T	C	SNP	LRRC37A6P	ENST00000284414	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	LRRC37A6P	HGNC	ENSG00000230445				163	0	0	139	8	5.44218
PTCHD3	0	genome.wustl.edu	37	10	27688067	27688067	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	27688067	27688067	G	A	SNP	PTCHD3	ENST00000438700	human	ensembl	74_37	-1	known	missense	c.1460	p.A487V	0.970	pfam_Patched,pfscan_SSD	pfam_Patched,pfscan_SSD	-	no_errors	PTCHD3	HGNC	ENSG00000182077				109	0	0	84	12	12.5
WAC	0	genome.wustl.edu	37	10	28878772	28878772	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	28878772	28878772	G	A	SNP	WAC	ENST00000354911	human	ensembl	74_37	+1	known	nonsense	c.489	p.W163*	1.000	superfamily_WW_dom	pfam_WW_dom,superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom	-	no_errors	WAC	HGNC	ENSG00000095787				173	0	0	111	26	18.9781
WAC	0	genome.wustl.edu	37	10	28903500	28903500	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	28903500	28903500	G	C	SNP	WAC	ENST00000354911	human	ensembl	74_37	+1	known	missense	c.1442	p.S481T	1.000	NULL	pfam_WW_dom,superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom	-	no_errors	WAC	HGNC	ENSG00000095787				79	0	0	62	4	6.06061
WAC	0	genome.wustl.edu	37	10	28903522	28903522	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	28903522	28903522	A	G	SNP	WAC	ENST00000354911	human	ensembl	74_37	+1	known	silent	c.1464	p.G488	1.000	NULL	pfam_WW_dom,superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom	-	no_errors	WAC	HGNC	ENSG00000095787				74	0	0	58	4	6.45161
BAMBI	0	genome.wustl.edu	37	10	28970330	28970330	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	28970330	28970330	G	A	SNP	BAMBI	ENST00000375533	human	ensembl	74_37	+1	known	missense	c.220	p.A74T	0.668	pfam_BMP/activin_membr-bound_inhib,pfam_Activin_rcpt,pirsf_BMP/activin_membr-bound_inhib	pfam_BMP/activin_membr-bound_inhib,pfam_Activin_rcpt,pirsf_BMP/activin_membr-bound_inhib	-	no_errors	BAMBI	HGNC	ENSG00000095739				92	0	0	81	11	11.9565
ZMYND11	0	genome.wustl.edu	37	10	294540	294540	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	294540	294540	C	A	SNP	ZMYND11	ENST00000381591	human	ensembl	74_37	+1	known	missense	c.1492	p.L498M	1.000	NULL	pfam_PWWP_dom,pfam_Bromodomain,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Bromodomain,smart_PWWP_dom,pfscan_PWWP_dom,pfscan_Znf_MYND,pfscan_Znf_PHD-finger,pfscan_Bromodomain	-	no_errors	ZMYND11	HGNC	ENSG00000015171				42	0	0	32	4	11.1111
SVIL	0	genome.wustl.edu	37	10	29759284	29759284	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	29759284	29759284	T	C	SNP	SVIL	ENST00000355867	human	ensembl	74_37	-1	known	missense	c.5764	p.I1922V	1.000	smart_Villin/Gelsolin	pfam_Gelsolin_dom,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Villin/Gelsolin,smart_Villin_headpiece,pfscan_Villin_headpiece,prints_Villin/Gelsolin	-	no_errors	SVIL	HGNC	ENSG00000197321				119	0	0	108	12	10
SVIL	0	genome.wustl.edu	37	10	29788121	29788121	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	29788121	29788121	C	A	SNP	SVIL	ENST00000355867	human	ensembl	74_37	-1	known	missense	c.3588	p.E1196D	0.997	NULL	pfam_Gelsolin_dom,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Villin/Gelsolin,smart_Villin_headpiece,pfscan_Villin_headpiece,prints_Villin/Gelsolin	-	no_errors	SVIL	HGNC	ENSG00000197321				68	0	0	56	7	11.1111
SVIL	0	genome.wustl.edu	37	10	29811383	29811383	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	29811383	29811383	C	A	SNP	SVIL	ENST00000355867	human	ensembl	74_37	-1	known	missense	c.3345	p.E1115D	0.410	NULL	pfam_Gelsolin_dom,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Villin/Gelsolin,smart_Villin_headpiece,pfscan_Villin_headpiece,prints_Villin/Gelsolin	-	no_errors	SVIL	HGNC	ENSG00000197321				93	0	0	82	6	6.81818
KIAA1462	0	genome.wustl.edu	37	10	30316580	30316580	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	30316580	30316580	T	C	SNP	KIAA1462	ENST00000375377	human	ensembl	74_37	-1	known	missense	c.2497	p.S833G	0.997	NULL	NULL	-	no_errors	KIAA1462	HGNC	ENSG00000165757				119	0	0	101	11	9.82143
ZNF438	0	genome.wustl.edu	37	10	31134156	31134156	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	31134156	31134156	T	C	SNP	ZNF438	ENST00000361310	human	ensembl	74_37	-1	known	missense	c.2221	p.M741V	0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF438	HGNC	ENSG00000183621				132	0	0	125	9	6.71642
PFKP	0	genome.wustl.edu	37	10	3151612	3151612	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	3151612	3151612	C	T	SNP	PFKP	ENST00000381125	human	ensembl	74_37	+1	known	silent	c.1029	p.C343	0.996	pirsf_6-phosphofructokinase_euk,tigrfam_6-phosphofructokinase_euk	pfam_Phosphofructokinase_dom,superfamily_Phosphofructokinase_dom,pirsf_6-phosphofructokinase_euk,prints_Phosphofructokinase,tigrfam_6-phosphofructokinase_euk	-	no_errors	PFKP	HGNC	ENSG00000067057				31	0	0	19	9	32.1429
ZEB1	0	genome.wustl.edu	37	10	31809776	31809776	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	31809776	31809776	A	G	SNP	ZEB1	ENST00000361642	human	ensembl	74_37	+1	known	missense	c.1516	p.S506G	0.986	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZEB1	HGNC	ENSG00000148516				121	0	0	91	6	6.18557
EPC1	0	genome.wustl.edu	37	10	32560682	32560682	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	32560682	32560682	T	C	SNP	EPC1	ENST00000263062	human	ensembl	74_37	-1	known	silent	c.2238	p.T746	1.000	pfam_Enhancer_polycomb_C	pfam_Enhancer_polycomb_C,pfam_Enhancer_polycomb-like_N	-	no_errors	EPC1	HGNC	ENSG00000120616				168	0	0	134	11	7.58621
CUL2	0	genome.wustl.edu	37	10	35360229	35360229	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	35360229	35360229	C	T	SNP	CUL2	ENST00000537177	human	ensembl	74_37	-1	known	missense	c.74	p.R25K	1.000	NULL	pfam_Cullin_N,pfam_Cullin_neddylation_domain,superfamily_Cullin_repeat-like_dom,superfamily_Cullin_homology,smart_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL2	HGNC	ENSG00000108094				75	0	0	53	4	7.01754
FZD8	0	genome.wustl.edu	37	10	35929473	35929473	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	35929473	35929473	G	A	SNP	FZD8	ENST00000374694	human	ensembl	74_37	-1	known	silent	c.885	p.T295	0.433	pfam_Frizzled,pfscan_GPCR_2-like,prints_Frizzled	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	FZD8	HGNC	ENSG00000177283				35	0	0	32	8	20
KLF6	0	genome.wustl.edu	37	10	3822350	3822350	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	3822350	3822350	G	A	SNP	KLF6	ENST00000497571	human	ensembl	74_37	-1	known	missense	c.748	p.H250Y	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	KLF6	HGNC	ENSG00000067082				79	0	0	75	13	14.7727
ZNF33A	0	genome.wustl.edu	37	10	38345455	38345455	+	Silent	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	38345455	38345455	A	T	SNP	ZNF33A	ENST00000432900	human	ensembl	74_37	+1	known	silent	c.2421	p.G807	1.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF33A	HGNC	ENSG00000189180				82	0	0	43	8	15.6863
DIP2C	0	genome.wustl.edu	37	10	410959	410959	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	410959	410959	A	T	SNP	DIP2C	ENST00000381496	human	ensembl	74_37	-1	known	missense	c.1950	p.H650Q	0.000	NULL	pfam_AMP-dep_Synth/Lig	-	no_errors	DIP2C	HGNC	ENSG00000151240				39	0	0	19	3	13.6364
ZNF33B	0	genome.wustl.edu	37	10	43089023	43089023	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	43089023	43089023	G	T	SNP	ZNF33B	ENST00000359467	human	ensembl	74_37	-1	known	missense	c.1375	p.H459N	0.989	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF33B	HGNC	ENSG00000196693				96	0	0	85	6	6.59341
ZNF33B	0	genome.wustl.edu	37	10	43089341	43089341	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	43089341	43089341	C	T	SNP	ZNF33B	ENST00000359467	human	ensembl	74_37	-1	known	missense	c.1057	p.G353R	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF33B	HGNC	ENSG00000196693				159	0	0	110	11	9.09091
BMS1	0	genome.wustl.edu	37	10	43325851	43325851	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	43325851	43325851	G	A	SNP	BMS1	ENST00000374518	human	ensembl	74_37	+1	known	missense	c.3599	p.R1200H	0.998	NULL	pfam_BMS1_TSR1_C,pfam_AARP2CN,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_AARP2CN	-	no_errors	BMS1	HGNC	ENSG00000165733				67	0	0	56	7	11.1111
ZNF32	0	genome.wustl.edu	37	10	44139744	44139744	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	44139744	44139744	A	T	SNP	ZNF32	ENST00000374433	human	ensembl	74_37	-1	known	missense	c.576	p.D192E	0.942	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF32	HGNC	ENSG00000169740				97	0	0	104	9	7.9646
ZNF32	0	genome.wustl.edu	37	10	44139814	44139814	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	44139814	44139814	C	G	SNP	ZNF32	ENST00000374433	human	ensembl	74_37	-1	known	missense	c.506	p.S169T	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF32	HGNC	ENSG00000169740				110	0	0	93	9	8.82353
DIP2C	0	genome.wustl.edu	37	10	445117	445117	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	445117	445117	C	A	SNP	DIP2C	ENST00000280886	human	ensembl	74_37	-1	known	missense	c.1192	p.A398S	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig,pfam_DMAP1-bd	-	no_errors	DIP2C	HGNC	ENSG00000151240				73	0	0	67	4	5.6338
RASSF4	0	genome.wustl.edu	37	10	45480371	45480371	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	45480371	45480371	A	G	SNP	RASSF4	ENST00000334940	human	ensembl	74_37	+1	known	missense	c.511	p.I171V	0.000	NULL	pfam_Ras-assoc,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_SARAH_dom	-	no_errors	RASSF4	HGNC	ENSG00000107551				119	0	0	130	9	6.47482
RASSF4	0	genome.wustl.edu	37	10	45480399	45480399	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	45480399	45480399	G	A	SNP	RASSF4	ENST00000334940	human	ensembl	74_37	+1	known	missense	c.539	p.G180D	1.000	NULL	pfam_Ras-assoc,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_SARAH_dom	-	no_errors	RASSF4	HGNC	ENSG00000107551				107	0	0	88	18	16.9811
ENSG00000243349	0	genome.wustl.edu	37	10	45652429	45652429	+	RNA	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	45652429	45652429	A	T	SNP	ENSG00000243349	ENST00000427229	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.746	-	-	-	no_errors	RP11-445N18.7	Clone_based_vega_gene	ENSG00000243349				34	0	0	35	5	12.5
ZFAND4	0	genome.wustl.edu	37	10	46121968	46121968	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	46121968	46121968	A	T	SNP	ZFAND4	ENST00000344646	human	ensembl	74_37	-1	known	missense	c.1303	p.L435M	0.000	NULL	pfam_Ubiquitin_dom,pfam_Znf_AN1,smart_Ubiquitin_dom,smart_Znf_AN1,pfscan_Znf_AN1,pfscan_Ubiquitin_supergroup,prints_Ubiquitin	-	no_errors	ZFAND4	HGNC	ENSG00000172671				250	0	0	198	14	6.60377
DIP2C	0	genome.wustl.edu	37	10	468784	468784	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	468784	468784	A	G	SNP	DIP2C	ENST00000280886	human	ensembl	74_37	-1	known	missense	c.584	p.V195A	1.000	NULL	pfam_AMP-dep_Synth/Lig,pfam_DMAP1-bd	-	no_errors	DIP2C	HGNC	ENSG00000151240				69	0	0	89	11	11
RBP3	0	genome.wustl.edu	37	10	48389189	48389189	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	48389189	48389189	T	C	SNP	RBP3	ENST00000224600	human	ensembl	74_37	-1	known	silent	c.1689	p.T563	0.017	pfam_Interphotoreceptor_retinol-bd,smart_Interphotoreceptor_retinol-bd	pfam_Interphotoreceptor_retinol-bd,pfam_Interphotorcpt_retinol-bd_N,smart_Interphotoreceptor_retinol-bd	-	no_errors	RBP3	HGNC	ENSG00000107618				73	0	0	62	6	8.82353
GDF2	0	genome.wustl.edu	37	10	48413794	48413794	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	48413794	48413794	G	A	SNP	GDF2	ENST00000249598	human	ensembl	74_37	-1	known	silent	c.1074	p.G358	0.000	pfam_TGF-b_C,smart_TGF-b_C,prints_Inhibin_asu	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C,prints_Inhibin_asu	-	no_errors	GDF2	HGNC	ENSG00000128802				67	0	0	63	17	21.25
FRMPD2	0	genome.wustl.edu	37	10	49420096	49420096	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	49420096	49420096	G	A	SNP	FRMPD2	ENST00000374201	human	ensembl	74_37	-1	known	silent	c.1512	p.I504	0.008	pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	pfam_PDZ,pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_PDZ,superfamily_FERM_central,superfamily_Kinase-like_dom,smart_KIND,smart_Band_41_domain,smart_PDZ,pfscan_FERM_domain,pfscan_PDZ,prints_Band_41_fam	-	no_errors	FRMPD2	HGNC	ENSG00000170324				47	0	0	32	6	15.7895
FRMPD2	0	genome.wustl.edu	37	10	49448436	49448436	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	49448436	49448436	C	T	SNP	FRMPD2	ENST00000374201	human	ensembl	74_37	-1	known	missense	c.667	p.A223T	0.000	NULL	pfam_PDZ,pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_PDZ,superfamily_FERM_central,superfamily_Kinase-like_dom,smart_KIND,smart_Band_41_domain,smart_PDZ,pfscan_FERM_domain,pfscan_PDZ,prints_Band_41_fam	-	no_errors	FRMPD2	HGNC	ENSG00000170324				28	0	0	40	4	9.09091
ARHGAP22	0	genome.wustl.edu	37	10	49654565	49654565	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	49654565	49654565	G	A	SNP	ARHGAP22	ENST00000417912	human	ensembl	74_37	-1	known	silent	c.2014	p.L672	0.991	NULL	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom	-	no_errors	ARHGAP22	HGNC	ENSG00000128805				91	0	0	71	22	23.6559
VSTM4	0	genome.wustl.edu	37	10	50227737	50227737	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	50227737	50227737	G	A	SNP	VSTM4	ENST00000332853	human	ensembl	74_37	-1	known	silent	c.921	p.S307	1.000	NULL	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	VSTM4	HGNC	ENSG00000165633				68	0	0	51	9	15
ERCC6	0	genome.wustl.edu	37	10	50736484	50736484	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	50736484	50736484	C	T	SNP	ERCC6	ENST00000355832	human	ensembl	74_37	-1	known	missense	c.631	p.A211T	0.013	NULL	pfam_SNF2_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ERCC6	HGNC	ENSG00000225830				125	0	0	78	21	21.2121
SLC18A3	0	genome.wustl.edu	37	10	50819081	50819081	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	50819081	50819081	G	C	SNP	SLC18A3	ENST00000374115	human	ensembl	74_37	+1	known	missense	c.295	p.A99P	0.781	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC18A3	HGNC	ENSG00000187714				46	0	0	54	6	10
CHAT	0	genome.wustl.edu	37	10	50833609	50833609	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	50833609	50833609	G	A	SNP	CHAT	ENST00000337653	human	ensembl	74_37	+1	known	silent	c.843	p.R281	0.998	pfam_Carn_acyl_trans	pfam_Carn_acyl_trans	-	no_errors	CHAT	HGNC	ENSG00000070748				22	0	0	17	8	32
AGAP7	0	genome.wustl.edu	37	10	51465221	51465221	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	51465221	51465221	A	G	SNP	AGAP7	ENST00000374095	human	ensembl	74_37	-1	known	missense	c.1235	p.V412A	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	AGAP7	HGNC	ENSG00000204169				237	0	0	235	13	5.24194
AGAP6	0	genome.wustl.edu	37	10	51768714	51768714	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	51768714	51768714	G	A	SNP	AGAP6	ENST00000374056	human	ensembl	74_37	+1	known	missense	c.760	p.G254R	1.000	NULL	pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	AGAP6	HGNC	ENSG00000204149				395	0	0	396	34	7.90698
AGAP6	0	genome.wustl.edu	37	10	51769756	51769756	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	51769756	51769756	G	A	SNP	AGAP6	ENST00000374056	human	ensembl	74_37	+1	known	missense	c.1802	p.G601D	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	AGAP6	HGNC	ENSG00000204149				121	0	0	126	15	10.6383
SGMS1	0	genome.wustl.edu	37	10	52071042	52071042	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	52071042	52071042	G	A	SNP	SGMS1	ENST00000361781	human	ensembl	74_37	-1	known	missense	c.875	p.T292I	1.000	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase	pfam_P_Acid_Pase_2/haloperoxidase,pfam_SAM_type1,superfamily_SAM/pointed,superfamily_P_Acid_Pase_2/haloperoxidase,pfscan_SAM	-	no_errors	SGMS1	HGNC	ENSG00000198964				79	0	0	38	7	15.5556
A1CF	0	genome.wustl.edu	37	10	52610496	52610496	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	52610496	52610496	T	C	SNP	A1CF	ENST00000373995	human	ensembl	74_37	-1	known	missense	c.52	p.T18A	0.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	-	no_errors	A1CF	HGNC	ENSG00000148584				184	0	0	143	13	8.33333
PRKG1	0	genome.wustl.edu	37	10	52834553	52834553	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	52834553	52834553	T	C	SNP	PRKG1	ENST00000373980	human	ensembl	74_37	+1	known	missense	c.203	p.L68S	1.000	pirsf_cGMP-dependent_protein_kinase	pirsf_cGMP-dependent_protein_kinase,pfam_Prot_kinase_dom,pfam_cNMP-bd_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,prints_cGMP_dep_kinase,prints_cAMP/cGMP_kin,pfscan_cNMP-bd_dom,pfscan_Prot_kinase_dom	-	no_errors	PRKG1	HGNC	ENSG00000185532				20	0	0	19	4	17.3913
CSTF2T	0	genome.wustl.edu	37	10	53457790	53457790	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	53457790	53457790	C	G	SNP	CSTF2T	ENST00000331173	human	ensembl	74_37	-1	known	missense	c.1520	p.G507A	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CSTF2T	HGNC	ENSG00000177613				40	0	0	27	3	10
TUBAL3	0	genome.wustl.edu	37	10	5435860	5435860	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	5435860	5435860	C	T	SNP	TUBAL3	ENST00000380419	human	ensembl	74_37	-1	known	missense	c.961	p.A321T	1.000	pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tub_FtsZ_C,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin,prints_Beta_tubulin	-	no_errors	TUBAL3	HGNC	ENSG00000178462				81	0	0	69	5	6.75676
MBL2	0	genome.wustl.edu	37	10	54530479	54530479	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	54530479	54530479	A	G	SNP	MBL2	ENST00000373968	human	ensembl	74_37	-1	known	silent	c.255	p.S85	0.919	pfam_Collagen	pfam_C-type_lectin,pfam_Collagen,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	MBL2	HGNC	ENSG00000165471				129	0	0	91	27	22.8814
CALML5	0	genome.wustl.edu	37	10	5541029	5541029	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	5541029	5541029	C	T	SNP	CALML5	ENST00000380332	human	ensembl	74_37	-1	known	missense	c.373	p.E125K	0.783	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	CALML5	HGNC	ENSG00000178372				18	0	0	10	7	41.1765
PCDH15	0	genome.wustl.edu	37	10	55566537	55566537	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	55566537	55566537	A	G	SNP	PCDH15	ENST00000414778	human	ensembl	74_37	-1	known	silent	c.4848	p.P1616	0.120	NULL	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH15	HGNC	ENSG00000150275				307	0	0	276	32	10.3896
FAM208B	0	genome.wustl.edu	37	10	5773004	5773004	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	5773004	5773004	C	T	SNP	FAM208B	ENST00000328090	human	ensembl	74_37	+1	known	nonsense	c.1042	p.Q348*	0.741	NULL	pfam_DUF3715,pfam_DUF3699	-	no_errors	FAM208B	HGNC	ENSG00000108021				75	0	0	63	5	7.35294
FAM208B	0	genome.wustl.edu	37	10	5798695	5798695	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	5798695	5798695	G	A	SNP	FAM208B	ENST00000328090	human	ensembl	74_37	+1	known	silent	c.6726	p.L2242	0.857	NULL	pfam_DUF3715,pfam_DUF3699	-	no_errors	FAM208B	HGNC	ENSG00000108021				84	0	0	52	9	14.7541
ZWINT	0	genome.wustl.edu	37	10	58117901	58117901	+	RNA	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	58117901	58117901	C	T	SNP	ZWINT	ENST00000460654	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ZWINT	HGNC	ENSG00000122952				132	0	0	100	11	9.90991
ZWINT	0	genome.wustl.edu	37	10	58119836	58119836	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	58119836	58119836	G	T	SNP	ZWINT	ENST00000373944	human	ensembl	74_37	-1	known	missense	c.199	p.L67M	0.995	NULL	NULL	-	no_errors	ZWINT	HGNC	ENSG00000122952				73	0	0	65	11	14.4737
BICC1	0	genome.wustl.edu	37	10	60273031	60273031	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	60273031	60273031	G	T	SNP	BICC1	ENST00000373886	human	ensembl	74_37	+1	known	missense	c.128	p.S43I	1.000	NULL	pfam_KH_dom_type_1,pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_KH_dom,smart_SAM,pfscan_SAM,pfscan_KH_dom_type_1	-	no_errors	BICC1	HGNC	ENSG00000122870				37	0	0	25	4	13.7931
BICC1	0	genome.wustl.edu	37	10	60562892	60562892	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	60562892	60562892	G	A	SNP	BICC1	ENST00000373886	human	ensembl	74_37	+1	known	missense	c.2071	p.A691T	1.000	NULL	pfam_KH_dom_type_1,pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_KH_dom,smart_SAM,pfscan_SAM,pfscan_KH_dom_type_1	-	no_errors	BICC1	HGNC	ENSG00000122870				51	0	0	38	14	26.9231
ANK3	0	genome.wustl.edu	37	10	61828702	61828702	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	61828702	61828702	G	A	SNP	ANK3	ENST00000280772	human	ensembl	74_37	-1	known	silent	c.11937	p.S3979	0.405	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,smart_Ankyrin_rpt,smart_ZU5,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK3	HGNC	ENSG00000151150				133	0	0	93	13	12.2642
ANK3	0	genome.wustl.edu	37	10	61834285	61834285	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	61834285	61834285	G	A	SNP	ANK3	ENST00000280772	human	ensembl	74_37	-1	known	silent	c.6354	p.H2118	0.998	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,smart_Ankyrin_rpt,smart_ZU5,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK3	HGNC	ENSG00000151150				105	0	0	78	27	25.7143
RHOBTB1	0	genome.wustl.edu	37	10	62652726	62652726	+	Silent	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	62652726	62652726	C	A	SNP	RHOBTB1	ENST00000337910	human	ensembl	74_37	-1	known	silent	c.324	p.S108	0.000	pfam_Small_GTPase,pfam_MIRO-like,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho	pfam_BTB_POZ,pfam_Small_GTPase,pfam_MIRO-like,superfamily_P-loop_NTPase,superfamily_BTB/POZ_fold,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_BTB/POZ-like,pfscan_BTB/POZ-like,prints_Small_GTPase	-	no_errors	RHOBTB1	HGNC	ENSG00000072422				81	0	0	62	25	28.7356
TMEM26	0	genome.wustl.edu	37	10	63188896	63188896	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	63188896	63188896	A	G	SNP	TMEM26	ENST00000399298	human	ensembl	74_37	-1	known	silent	c.393	p.V131	0.009	pfam_Transmembrane_26	pfam_Transmembrane_26	-	no_errors	TMEM26	HGNC	ENSG00000196932				66	0	0	49	6	10.9091
ZNF365	0	genome.wustl.edu	37	10	64415333	64415333	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	64415333	64415333	G	A	SNP	ZNF365	ENST00000395251	human	ensembl	74_37	+1	known	silent	c.333	p.S111	0.025	NULL	NULL	-	no_errors	ZNF365	HGNC	ENSG00000138311				101	0	0	90	10	10
EGR2	0	genome.wustl.edu	37	10	64573486	64573486	+	Silent	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	64573486	64573486	G	T	SNP	EGR2	ENST00000242480	human	ensembl	74_37	-1	known	silent	c.912	p.A304	0.000	NULL	pfam_DUF3446,pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	EGR2	HGNC	ENSG00000122877				39	0	0	37	4	9.7561
JMJD1C	0	genome.wustl.edu	37	10	64937580	64937580	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	64937580	64937580	T	C	SNP	JMJD1C	ENST00000399262	human	ensembl	74_37	-1	known	missense	c.7121	p.D2374G	0.998	smart_JmjC_dom,pfscan_JmjC_dom	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	JMJD1C	HGNC	ENSG00000171988				64	0	0	26	5	16.129
JMJD1C	0	genome.wustl.edu	37	10	64944401	64944401	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	64944401	64944401	G	A	SNP	JMJD1C	ENST00000399262	human	ensembl	74_37	-1	known	missense	c.6928	p.P2310S	1.000	smart_JmjC_dom,pfscan_JmjC_dom	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	JMJD1C	HGNC	ENSG00000171988				124	0	0	92	6	6.12245
LRRTM3	0	genome.wustl.edu	37	10	68686693	68686693	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	68686693	68686693	A	G	SNP	LRRTM3	ENST00000361320	human	ensembl	74_37	+1	known	missense	c.19	p.R7G	1.000	NULL	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRTM3	HGNC	ENSG00000198739				67	0	0	56	6	9.67742
LRRTM3	0	genome.wustl.edu	37	10	68686785	68686785	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	68686785	68686785	C	T	SNP	LRRTM3	ENST00000361320	human	ensembl	74_37	+1	known	silent	c.111	p.G37	1.000	pfam_LRR-contain_N,smart_LRR-contain_N	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRTM3	HGNC	ENSG00000198739				76	0	0	54	23	29.8701
CTNNA3	0	genome.wustl.edu	37	10	68979622	68979622	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	68979622	68979622	T	C	SNP	CTNNA3	ENST00000373744	human	ensembl	74_37	-1	known	missense	c.586	p.K196E	1.000	pfam_Vinculin/catenin,superfamily_Vinculin/catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin,prints_Vinculin	-	no_errors	CTNNA3	HGNC	ENSG00000183230				82	0	0	56	6	9.67742
CTNNA3	0	genome.wustl.edu	37	10	69407206	69407206	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	69407206	69407206	G	A	SNP	CTNNA3	ENST00000373744	human	ensembl	74_37	-1	known	silent	c.66	p.T22	0.885	pfam_Vinculin/catenin,prints_Alpha_catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin,prints_Vinculin	-	no_errors	CTNNA3	HGNC	ENSG00000183230				182	0	0	141	10	6.62252
DNAJC12	0	genome.wustl.edu	37	10	69583091	69583091	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	69583091	69583091	A	G	SNP	DNAJC12	ENST00000225171	human	ensembl	74_37	-1	known	silent	c.138	p.H46	1.000	pfam_DnaJ_domain,superfamily_DnaJ_domain,smart_DnaJ_domain,pfscan_DnaJ_domain,prints_DnaJ_domain	pfam_DnaJ_domain,superfamily_DnaJ_domain,smart_DnaJ_domain,pfscan_DnaJ_domain,prints_DnaJ_domain	-	no_errors	DNAJC12	HGNC	ENSG00000108176				125	0	0	95	7	6.86275
MYPN	0	genome.wustl.edu	37	10	69948775	69948775	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	69948775	69948775	G	A	SNP	MYPN	ENST00000358913	human	ensembl	74_37	+1	known	silent	c.2817	p.T939	0.922	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	MYPN	HGNC	ENSG00000138347				87	0	0	55	10	15.3846
PBLD	0	genome.wustl.edu	37	10	70056653	70056653	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	70056653	70056653	G	A	SNP	PBLD	ENST00000309049	human	ensembl	74_37	-1	known	silent	c.174	p.N58	0.998	pfam_Phenazine_PhzF,pirsf_Phenazine_PhzF,tigrfam_Phenazine_PhzF	pfam_Phenazine_PhzF,pirsf_Phenazine_PhzF,tigrfam_Phenazine_PhzF	-	no_errors	PBLD	HGNC	ENSG00000108187				154	1	0.645161	95	8	7.76699
RUFY2	0	genome.wustl.edu	37	10	70138421	70138421	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	70138421	70138421	G	A	SNP	RUFY2	ENST00000399200	human	ensembl	74_37	-1	known	silent	c.1110	p.N370	0.935	NULL	pfam_Run	-	no_errors	RUFY2	HGNC	ENSG00000204130				65	0	0	40	4	9.09091
DNA2	0	genome.wustl.edu	37	10	70204764	70204764	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	70204764	70204764	T	C	SNP	DNA2	ENST00000399180	human	ensembl	74_37	-1	known	silent	c.1392	p.T464	0.538	NULL	pfam_DNA_replication_fac_Dna2_N,superfamily_P-loop_NTPase	-	no_errors	DNA2	HGNC	ENSG00000138346				106	0	0	90	9	9.09091
DNA2	0	genome.wustl.edu	37	10	70231681	70231681	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	70231681	70231681	G	A	SNP	DNA2	ENST00000399180	human	ensembl	74_37	-1	known	silent	c.199	p.L67	0.000	NULL	pfam_DNA_replication_fac_Dna2_N,superfamily_P-loop_NTPase	-	no_errors	DNA2	HGNC	ENSG00000138346				51	0	0	22	3	12
TET1	0	genome.wustl.edu	37	10	70404504	70404504	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	70404504	70404504	A	T	SNP	TET1	ENST00000373644	human	ensembl	74_37	+1	known	missense	c.2018	p.D673V	1.000	NULL	pfam_Znf_CXXC,pfscan_Znf_CXXC	-	no_errors	TET1	HGNC	ENSG00000138336				47	0	0	33	4	10.8108
CCAR1	0	genome.wustl.edu	37	10	70496769	70496769	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	70496769	70496769	G	T	SNP	CCAR1	ENST00000265872	human	ensembl	74_37	+1	known	missense	c.210	p.Q70H	1.000	NULL	pfam_SAP_dom,superfamily_NA-bd_OB-fold,smart_SAP_dom,pfscan_SAP_dom	-	no_errors	CCAR1	HGNC	ENSG00000060339				32	0	0	27	4	12.9032
CCAR1	0	genome.wustl.edu	37	10	70500386	70500386	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	70500386	70500386	T	C	SNP	CCAR1	ENST00000265872	human	ensembl	74_37	+1	known	silent	c.292	p.L98	1.000	NULL	pfam_SAP_dom,superfamily_NA-bd_OB-fold,smart_SAP_dom,pfscan_SAP_dom	-	no_errors	CCAR1	HGNC	ENSG00000060339				158	0	0	114	7	5.78512
STOX1	0	genome.wustl.edu	37	10	70645238	70645238	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	70645238	70645238	A	G	SNP	STOX1	ENST00000298596	human	ensembl	74_37	+1	known	silent	c.1686	p.E562	0.459	NULL	pfam_Storkhead-box_winged-helix	-	no_errors	STOX1	HGNC	ENSG00000165730				76	0	0	58	5	7.93651
EIF4EBP2	0	genome.wustl.edu	37	10	72179739	72179739	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	72179739	72179739	C	T	SNP	EIF4EBP2	ENST00000373218	human	ensembl	74_37	+1	known	missense	c.215	p.P72L	1.000	pfam_EIF4EBP	pfam_EIF4EBP	-	no_errors	EIF4EBP2	HGNC	ENSG00000148730				119	0	0	86	5	5.49451
PALD1	0	genome.wustl.edu	37	10	72291167	72291167	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	72291167	72291167	C	A	SNP	PALD1	ENST00000263563	human	ensembl	74_37	+1	known	missense	c.590	p.P197H	0.001	NULL	smart_Tyr_Pase_cat	-	no_errors	PALD1	HGNC	ENSG00000107719				81	0	0	73	6	7.59494
SLC29A3	0	genome.wustl.edu	37	10	73082559	73082559	+	Silent	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	73082559	73082559	C	A	SNP	SLC29A3	ENST00000373189	human	ensembl	74_37	+1	known	silent	c.48	p.T16	0.996	NULL	pfam_Eqnu_transpt,prints_Eqnu_transpt	-	no_errors	SLC29A3	HGNC	ENSG00000198246				207	2	0.956938	170	23	11.9171
CDH23	0	genome.wustl.edu	37	10	73326655	73326655	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	73326655	73326655	G	A	SNP	CDH23	ENST00000461841	human	ensembl	74_37	+1	known	missense	c.721	p.E241K	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH23	HGNC	ENSG00000107736				31	0	0	23	5	17.8571
CDH23	0	genome.wustl.edu	37	10	73377101	73377101	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	73377101	73377101	A	G	SNP	CDH23	ENST00000461841	human	ensembl	74_37	+1	known	missense	c.1220	p.Q407R	1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH23	HGNC	ENSG00000107736				47	0	0	38	3	7.31707
CDH23	0	genome.wustl.edu	37	10	73468938	73468938	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	73468938	73468938	G	A	SNP	CDH23	ENST00000224721	human	ensembl	74_37	+1	putative	missense	c.3205	p.A1069T	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH23	HGNC	ENSG00000107736				48	0	0	72	5	6.49351
CDH23	0	genome.wustl.edu	37	10	73537513	73537513	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	73537513	73537513	T	C	SNP	CDH23	ENST00000224721	human	ensembl	74_37	+1	putative	missense	c.4937	p.V1646A	0.992	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH23	HGNC	ENSG00000107736				23	0	0	32	4	11.1111
SFMBT2	0	genome.wustl.edu	37	10	7409612	7409612	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	7409612	7409612	G	A	SNP	SFMBT2	ENST00000361972	human	ensembl	74_37	-1	known	silent	c.435	p.D145	0.858	pfam_Mbt	pfam_Mbt,pfam_DUF3588,pfam_SAM_type1,pfam_Pointed_dom,superfamily_SAM/pointed,superfamily_ARM-type_fold,smart_Mbt,smart_SAM,pfscan_Mbt	-	no_errors	SFMBT2	HGNC	ENSG00000198879				33	0	0	27	14	34.1463
OIT3	0	genome.wustl.edu	37	10	74692183	74692183	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	74692183	74692183	C	T	SNP	OIT3	ENST00000334011	human	ensembl	74_37	+1	known	silent	c.1539	p.C513	1.000	pfam_ZP_dom,smart_ZP_dom,pfscan_ZP_dom	pfam_ZP_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_ZP_dom,pfscan_ZP_dom,prints_ZP_dom	-	no_errors	OIT3	HGNC	ENSG00000138315				133	0	0	125	12	8.75912
MSS51	0	genome.wustl.edu	37	10	75185715	75185715	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	75185715	75185715	C	T	SNP	MSS51	ENST00000299432	human	ensembl	74_37	-1	known	missense	c.923	p.G308D	0.869	NULL	pfam_Znf_MYND,pfscan_Znf_MYND	-	no_errors	MSS51	HGNC	ENSG00000166343				39	0	0	46	8	14.8148
PPP3CB	0	genome.wustl.edu	37	10	75231343	75231343	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	75231343	75231343	A	G	SNP	PPP3CB	ENST00000394829	human	ensembl	74_37	-1	known	silent	c.552	p.Y184	1.000	pfam_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase	pfam_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase,prints_Ser/Thr-sp_prot-phosphatase	-	no_errors	PPP3CB	HGNC	ENSG00000107758				142	0	0	93	10	9.70874
USP54	0	genome.wustl.edu	37	10	75260443	75260443	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	75260443	75260443	T	C	SNP	USP54	ENST00000339859	human	ensembl	74_37	-1	known	missense	c.4465	p.T1489A	1.000	NULL	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP54	HGNC	ENSG00000166348				100	1	0.990099	126	9	6.66667
USP54	0	genome.wustl.edu	37	10	75331241	75331241	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	75331241	75331241	T	C	SNP	USP54	ENST00000339859	human	ensembl	74_37	-1	known	missense	c.178	p.S60G	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP54	HGNC	ENSG00000166348				118	0	0	93	7	7
SYNPO2L	0	genome.wustl.edu	37	10	75406539	75406539	+	Silent	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	75406539	75406539	T	A	SNP	SYNPO2L	ENST00000394810	human	ensembl	74_37	-1	known	silent	c.2871	p.R957	0.013	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SYNPO2L	HGNC	ENSG00000166317				119	0	0	123	7	5.38462
CAMK2G	0	genome.wustl.edu	37	10	75576871	75576871	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	75576871	75576871	T	C	SNP	CAMK2G	ENST00000423381	human	ensembl	74_37	-1	known	missense	c.1444	p.I482V	1.000	pfam_Ca/CaM-dep_prot_kinase-assoc	pfam_Prot_kinase_dom,pfam_Ca/CaM-dep_prot_kinase-assoc,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CAMK2G	HGNC	ENSG00000148660				88	0	0	89	7	7.29167
VCL	0	genome.wustl.edu	37	10	75868743	75868743	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	75868743	75868743	T	C	SNP	VCL	ENST00000211998	human	ensembl	74_37	+1	known	silent	c.2574	p.L858	1.000	pfam_Vinculin/catenin,prints_Vinculin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Vinculin	-	no_errors	VCL	HGNC	ENSG00000035403				92	0	0	86	11	11.3402
ITIH5	0	genome.wustl.edu	37	10	7608186	7608186	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	7608186	7608186	A	G	SNP	ITIH5	ENST00000256861	human	ensembl	74_37	-1	known	silent	c.2334	p.S778	0.015	pfam_ITI_HC_C	pfam_ITI_HC_C,pfam_VIT,pfam_VWF_A,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	ITIH5	HGNC	ENSG00000123243				22	0	0	31	4	11.4286
ITIH5	0	genome.wustl.edu	37	10	7618579	7618579	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	7618579	7618579	G	A	SNP	ITIH5	ENST00000256861	human	ensembl	74_37	-1	known	silent	c.1815	p.A605	0.007	NULL	pfam_ITI_HC_C,pfam_VIT,pfam_VWF_A,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	ITIH5	HGNC	ENSG00000123243				65	0	0	66	4	5.71429
ITIH5	0	genome.wustl.edu	37	10	7618800	7618800	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	7618800	7618800	C	T	SNP	ITIH5	ENST00000256861	human	ensembl	74_37	-1	known	missense	c.1594	p.A532T	0.999	NULL	pfam_ITI_HC_C,pfam_VIT,pfam_VWF_A,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	ITIH5	HGNC	ENSG00000123243				90	0	0	80	6	6.97674
ITIH5	0	genome.wustl.edu	37	10	7657973	7657973	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	7657973	7657973	G	A	SNP	ITIH5	ENST00000256861	human	ensembl	74_37	-1	known	missense	c.911	p.A304V	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_ITI_HC_C,pfam_VIT,pfam_VWF_A,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	ITIH5	HGNC	ENSG00000123243				121	0	0	96	7	6.79612
ITIH5	0	genome.wustl.edu	37	10	7679259	7679259	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	7679259	7679259	G	A	SNP	ITIH5	ENST00000256861	human	ensembl	74_37	-1	known	missense	c.584	p.A195V	0.466	NULL	pfam_ITI_HC_C,pfam_VIT,pfam_VWF_A,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	ITIH5	HGNC	ENSG00000123243				85	0	0	96	13	11.9266
KIN	0	genome.wustl.edu	37	10	7820934	7820934	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	7820934	7820934	A	G	SNP	KIN	ENST00000379562	human	ensembl	74_37	-1	known	missense	c.425	p.I142T	1.000	pfam_DNA/RNA-bd_Kin17_cons_domain	pfam_DNA/RNA-bd_Kin17_cons_domain	-	no_errors	KIN	HGNC	ENSG00000151657				169	0	0	132	16	10.8108
KCNMA1	0	genome.wustl.edu	37	10	78637580	78637580	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	78637580	78637580	T	C	SNP	KCNMA1	ENST00000404771	human	ensembl	74_37	-1	putative	missense	c.3784	p.T1262A	1.000	NULL	pfam_K_chnl_Ca-activ_BK_asu,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,pfam_RCK_N,prints_K_chnl_Ca-activ_BK_asu,prints_K_chnl	-	no_errors	KCNMA1	HGNC	ENSG00000156113				20	0	0	16	6	27.2727
DLG5	0	genome.wustl.edu	37	10	79556266	79556266	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	79556266	79556266	C	T	SNP	DLG5	ENST00000372391	human	ensembl	74_37	-1	known	missense	c.5251	p.V1751M	0.997	superfamily_P-loop_NTPase,smart_GK/Ca_channel_bsu	pfam_PDZ,pfam_DUF622,pfam_GK/Ca_channel_bsu,superfamily_P-loop_NTPase,superfamily_PDZ,superfamily_SH3_domain,superfamily_DEATH-like_dom,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pfscan_CARD,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like	-	no_errors	DLG5	HGNC	ENSG00000151208				43	0	0	55	5	8.33333
DLG5	0	genome.wustl.edu	37	10	79569349	79569349	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	79569349	79569349	C	T	SNP	DLG5	ENST00000372391	human	ensembl	74_37	-1	known	missense	c.4603	p.A1535T	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,pfam_DUF622,pfam_GK/Ca_channel_bsu,superfamily_P-loop_NTPase,superfamily_PDZ,superfamily_SH3_domain,superfamily_DEATH-like_dom,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pfscan_CARD,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like	-	no_errors	DLG5	HGNC	ENSG00000151208				119	0	0	137	14	9.27152
POLR3A	0	genome.wustl.edu	37	10	79761991	79761991	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	79761991	79761991	T	C	SNP	POLR3A	ENST00000372371	human	ensembl	74_37	-1	known	missense	c.2323	p.N775D	1.000	pfam_RNA_pol_Rpb1_4	pfam_RNA_pol_Rpb1_1,pfam_RNA_pol_Rpb1_5,pfam_RNA_pol_asu,pfam_RNA_pol_Rpb1_3,pfam_RNA_pol_Rpb1_4,smart_RNA_pol_N	-	no_errors	POLR3A	HGNC	ENSG00000148606				18	0	0	22	4	15.3846
POLR3A	0	genome.wustl.edu	37	10	79773500	79773500	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	79773500	79773500	T	C	SNP	POLR3A	ENST00000372371	human	ensembl	74_37	-1	known	missense	c.1480	p.T494A	1.000	pfam_RNA_pol_asu,smart_RNA_pol_N	pfam_RNA_pol_Rpb1_1,pfam_RNA_pol_Rpb1_5,pfam_RNA_pol_asu,pfam_RNA_pol_Rpb1_3,pfam_RNA_pol_Rpb1_4,smart_RNA_pol_N	-	no_errors	POLR3A	HGNC	ENSG00000148606				136	0	0	117	10	7.87402
ZMIZ1	0	genome.wustl.edu	37	10	80968104	80968104	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	80968104	80968104	T	A	SNP	ZMIZ1	ENST00000334512	human	ensembl	74_37	+1	known	missense	c.72	p.N24K	1.000	NULL	pfam_Znf_MIZ,pfscan_Znf_MIZ	-	no_errors	ZMIZ1	HGNC	ENSG00000108175				53	0	0	59	4	6.34921
GATA3	0	genome.wustl.edu	37	10	8100631	8100631	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	8100631	8100631	G	A	SNP	GATA3	ENST00000379328	human	ensembl	74_37	+1	known	missense	c.605	p.R202H	0.994	pirsf_TF_GATA-1/2/3	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485				73	0	0	80	5	5.88235
DYDC2	0	genome.wustl.edu	37	10	82126469	82126469	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	82126469	82126469	C	T	SNP	DYDC2	ENST00000372198	human	ensembl	74_37	+1	known	missense	c.338	p.T113M	0.027	NULL	pfam_Dpy-30_motif	-	no_errors	DYDC2	HGNC	ENSG00000133665				216	0	0	154	11	6.66667
CDHR1	0	genome.wustl.edu	37	10	85970802	85970802	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	85970802	85970802	G	T	SNP	CDHR1	ENST00000372117	human	ensembl	74_37	+1	known	missense	c.1366	p.A456S	0.998	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDHR1	HGNC	ENSG00000148600				144	0	0	158	17	9.71429
CDHR1	0	genome.wustl.edu	37	10	85973041	85973041	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	85973041	85973041	G	T	SNP	CDHR1	ENST00000372117	human	ensembl	74_37	+1	known	missense	c.1977	p.K659N	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDHR1	HGNC	ENSG00000148600				139	0	0	123	11	8.20896
GRID1	0	genome.wustl.edu	37	10	87373349	87373349	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	87373349	87373349	G	A	SNP	GRID1	ENST00000327946	human	ensembl	74_37	-1	known	missense	c.2416	p.P806S	1.000	pfam_Iontro_glu_rcpt,smart_Iontro_glu_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRID1	HGNC	ENSG00000182771				63	0	0	74	7	8.64198
MMRN2	0	genome.wustl.edu	37	10	88703005	88703005	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	88703005	88703005	C	T	SNP	MMRN2	ENST00000372027	human	ensembl	74_37	-1	known	silent	c.1536	p.T512	0.000	superfamily_tRNA-bd_arm	pfam_C1q,pfam_EMI_domain,superfamily_Tumour_necrosis_fac-like_dom,superfamily_tRNA-bd_arm,smart_C1q,prints_C1q,pfscan_C1q,pfscan_EMI_domain	-	no_errors	MMRN2	HGNC	ENSG00000173269				63	0	0	40	16	28.5714
MMRN2	0	genome.wustl.edu	37	10	88703232	88703232	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	88703232	88703232	G	A	SNP	MMRN2	ENST00000372027	human	ensembl	74_37	-1	known	nonsense	c.1309	p.Q437*	0.901	NULL	pfam_C1q,pfam_EMI_domain,superfamily_Tumour_necrosis_fac-like_dom,superfamily_tRNA-bd_arm,smart_C1q,prints_C1q,pfscan_C1q,pfscan_EMI_domain	-	no_errors	MMRN2	HGNC	ENSG00000173269				69	0	0	76	5	6.17284
MMRN2	0	genome.wustl.edu	37	10	88705404	88705404	+	Nonstop_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	88705404	88705404	T	C	SNP	MMRN2	ENST00000608090	human	ensembl	74_37	-1	known	nonstop	c.329	p.*110W	0.274	NULL	NULL	-	no_errors	MMRN2	HGNC	ENSG00000173269				51	0	0	28	4	12.5
GLUD1	0	genome.wustl.edu	37	10	88817455	88817455	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	88817455	88817455	C	A	SNP	GLUD1	ENST00000277865	human	ensembl	74_37	-1	known	missense	c.1487	p.R496M	1.000	smart_Glu/Leu/Phe/Val_DH_C	pfam_Glu/Leu/Phe/Val_DH_C,pfam_Glu/Leu/Phe/Val_DH_dimer_dom,smart_Glu/Leu/Phe/Val_DH_C,prints_Glu/Leu/Phe/Val_DH	-	no_errors	GLUD1	HGNC	ENSG00000148672				160	0	0	134	8	5.6338
MINPP1	0	genome.wustl.edu	37	10	89312069	89312069	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	89312069	89312069	G	A	SNP	MINPP1	ENST00000371996	human	ensembl	74_37	+1	known	missense	c.1298	p.R433Q	0.810	pfam_His_Pase_superF_clade-2,pirsf_Histidine_acid_Pase_euk	pfam_His_Pase_superF_clade-2,pirsf_Histidine_acid_Pase_euk	-	no_errors	MINPP1	HGNC	ENSG00000107789				137	0	0	90	8	8.16327
PAPSS2	0	genome.wustl.edu	37	10	89469058	89469058	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	89469058	89469058	G	A	SNP	PAPSS2	ENST00000456849	human	ensembl	74_37	+1	known	missense	c.133	p.V45M	0.992	pfam_APS_kinase,superfamily_P-loop_NTPase,tigrfam_APS_kinase	pfam_Sulfurylase_cat_dom,pfam_APS_kinase,superfamily_PUA-like_domain,superfamily_P-loop_NTPase,tigrfam_Sulphate_adenylyltransferase,tigrfam_APS_kinase	-	no_errors	PAPSS2	HGNC	ENSG00000198682				81	0	0	46	6	11.5385
PTEN	0	genome.wustl.edu	37	10	89653818	89653818	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	89653818	89653818	C	T	SNP	PTEN	ENST00000371953	human	ensembl	74_37	+1	known	missense	c.116	p.A39V	1.000	smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Phosphatase_tensin-typ	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_C2_dom,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	PTEN	HGNC	ENSG00000171862				114	0	0	61	4	6.15385
PTEN	0	genome.wustl.edu	37	10	89685303	89685303	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	89685303	89685303	G	A	SNP	PTEN	ENST00000371953	human	ensembl	74_37	+1	known	silent	c.198	p.K66	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Phosphatase_tensin-typ	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_C2_dom,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	PTEN	HGNC	ENSG00000171862				40	0	0	41	5	10.8696
PTEN	0	genome.wustl.edu	37	10	89692811	89692811	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	89692811	89692811	G	A	SNP	PTEN	ENST00000371953	human	ensembl	74_37	+1	known	missense	c.295	p.E99K	1.000	pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Phosphatase_tensin-typ	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_C2_dom,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	PTEN	HGNC	ENSG00000171862				125	0	0	91	6	6.18557
PTEN	0	genome.wustl.edu	37	10	89692895	89692895	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	89692895	89692895	G	A	SNP	PTEN	ENST00000371953	human	ensembl	74_37	+1	known	missense	c.379	p.G127R	1.000	pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_C2_dom,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	PTEN	HGNC	ENSG00000171862				138	0	0	122	7	5.42636
CH25H	0	genome.wustl.edu	37	10	90966740	90966740	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	90966740	90966740	G	A	SNP	CH25H	ENST00000371852	human	ensembl	74_37	-1	known	silent	c.310	p.L104	1.000	NULL	pfam_Fatty_acid_hydroxylase	-	no_errors	CH25H	HGNC	ENSG00000138135				31	0	0	27	10	27.027
IFIT2	0	genome.wustl.edu	37	10	91066414	91066414	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	91066414	91066414	A	G	SNP	IFIT2	ENST00000371826	human	ensembl	74_37	+1	known	missense	c.701	p.K234R	0.000	pfscan_TPR-contain_dom	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	IFIT2	HGNC	ENSG00000119922				102	0	0	75	14	15.7303
HTR7	0	genome.wustl.edu	37	10	92502258	92502258	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	92502258	92502258	T	C	SNP	HTR7	ENST00000336152	human	ensembl	74_37	-1	known	missense	c.1421	p.K474R	1.000	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_5HT_7_rcpt,prints_GPCR_Rhodpsn,prints_Melcrt_ACTH_rcpt	-	no_errors	HTR7	HGNC	ENSG00000148680				87	0	0	50	7	12.2807
RPP30	0	genome.wustl.edu	37	10	92656116	92656116	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	92656116	92656116	T	C	SNP	RPP30	ENST00000413330	human	ensembl	74_37	+1	known	missense	c.664	p.S222P	0.998	pfam_RNase_P_p30,superfamily_Pol/histidinol_Pase-like	pfam_RNase_P_p30,superfamily_Pol/histidinol_Pase-like	-	no_errors	RPP30	HGNC	ENSG00000148688				81	0	0	74	4	5.12821
HECTD2	0	genome.wustl.edu	37	10	93242786	93242786	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	93242786	93242786	T	C	SNP	HECTD2	ENST00000446394	human	ensembl	74_37	+1	known	silent	c.774	p.A258	0.998	NULL	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	-	no_errors	HECTD2	HGNC	ENSG00000165338				95	0	0	56	4	6.66667
PPP1R3C	0	genome.wustl.edu	37	10	93390605	93390605	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	93390605	93390605	A	T	SNP	PPP1R3C	ENST00000238994	human	ensembl	74_37	-1	known	missense	c.33	p.D11E	0.999	pirsf_Pase-1_Glycogen_target-su_met	pfam_CBM_21,pirsf_Pase-1_Glycogen_target-su_met,pfscan_CBM_21	-	no_errors	PPP1R3C	HGNC	ENSG00000119938				67	0	0	64	8	11.1111
TNKS2	0	genome.wustl.edu	37	10	93602099	93602099	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	93602099	93602099	A	G	SNP	TNKS2	ENST00000371627	human	ensembl	74_37	+1	known	silent	c.2010	p.V670	1.000	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_Poly(ADP-ribose)pol_cat_dom,pfam_SAM_2,pfam_SAM_type1,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SAM,pfscan_Poly(ADP-ribose)pol_cat_dom,prints_Ankyrin_rpt	-	no_errors	TNKS2	HGNC	ENSG00000107854				91	0	0	59	9	13.2353
BTAF1	0	genome.wustl.edu	37	10	93711220	93711220	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	93711220	93711220	G	A	SNP	BTAF1	ENST00000265990	human	ensembl	74_37	+1	known	missense	c.461	p.G154D	1.000	superfamily_ARM-type_fold	pfam_DUF3535,pfam_SNF2_N,pfam_HEAT,pfam_Helicase_C,superfamily_ARM-type_fold,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	BTAF1	HGNC	ENSG00000095564				101	0	0	46	14	23.3333
BTAF1	0	genome.wustl.edu	37	10	93740222	93740222	+	Silent	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	93740222	93740222	T	G	SNP	BTAF1	ENST00000265990	human	ensembl	74_37	+1	known	silent	c.1662	p.S554	1.000	superfamily_ARM-type_fold	pfam_DUF3535,pfam_SNF2_N,pfam_HEAT,pfam_Helicase_C,superfamily_ARM-type_fold,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	BTAF1	HGNC	ENSG00000095564				108	0	0	75	10	11.7647
TUBB8	0	genome.wustl.edu	37	10	94047	94047	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	94047	94047	A	G	SNP	TUBB8	ENST00000332708	human	ensembl	74_37	-1	known	missense	c.176	p.V59A	1.000	NULL	superfamily_Tubulin_FtsZ_GTPase	-	no_errors	TUBB8	HGNC	ENSG00000173876				16	0	0	17	5	22.7273
KIF11	0	genome.wustl.edu	37	10	94373156	94373156	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	94373156	94373156	A	G	SNP	KIF11	ENST00000260731	human	ensembl	74_37	+1	known	missense	c.812	p.N271S	1.000	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF11	HGNC	ENSG00000138160				48	0	0	28	9	24.3243
EXOC6	0	genome.wustl.edu	37	10	94688101	94688101	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	94688101	94688101	C	T	SNP	EXOC6	ENST00000371547	human	ensembl	74_37	+1	known	silent	c.942	p.D314	1.000	pirsf_Sec15	pfam_Sec15,pirsf_Sec15	-	no_errors	EXOC6	HGNC	ENSG00000138190				122	0	0	79	7	8.13953
CYP26C1	0	genome.wustl.edu	37	10	94822706	94822706	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	94822706	94822706	A	G	SNP	CYP26C1	ENST00000285949	human	ensembl	74_37	+1	known	missense	c.659	p.N220S	1.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I,prints_Cyt_P450	-	no_errors	CYP26C1	HGNC	ENSG00000187553				53	0	0	52	5	8.77193
MYOF	0	genome.wustl.edu	37	10	95110997	95110997	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	95110997	95110997	A	G	SNP	MYOF	ENST00000359263	human	ensembl	74_37	-1	known	missense	c.3878	p.V1293A	1.000	superfamily_C2_dom	pfam_C2_dom,pfam_Ferlin_B-domain,pfam_FerIin-domain,pfam_Ferlin_A-domain,superfamily_C2_dom,smart_C2_dom,smart_Peroxin/Ferlin,pfscan_C2_dom	-	no_errors	MYOF	HGNC	ENSG00000138119				45	0	0	39	5	11.3636
MYOF	0	genome.wustl.edu	37	10	95119640	95119640	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	95119640	95119640	C	A	SNP	MYOF	ENST00000359263	human	ensembl	74_37	-1	known	missense	c.3070	p.V1024F	1.000	smart_Peroxin/Ferlin	pfam_C2_dom,pfam_Ferlin_B-domain,pfam_FerIin-domain,pfam_Ferlin_A-domain,superfamily_C2_dom,smart_C2_dom,smart_Peroxin/Ferlin,pfscan_C2_dom	-	no_errors	MYOF	HGNC	ENSG00000138119				150	0	0	133	15	10.1351
SLC35G1	0	genome.wustl.edu	37	10	95660549	95660549	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	95660549	95660549	A	G	SNP	SLC35G1	ENST00000427197	human	ensembl	74_37	+1	known	missense	c.400	p.I134V	0.002	pfam_DMT	pfam_DMT	-	no_errors	SLC35G1	HGNC	ENSG00000176273				130	1	0.763359	90	8	8.16327
PIPSL	0	genome.wustl.edu	37	10	95720151	95720151	+	RNA	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	95720151	95720151	C	T	SNP	PIPSL	ENST00000480546	human	ensembl	74_37	-1	putative	rna	NULL	NULL	1.000	-	-	-	no_errors	PIPSL	HGNC	ENSG00000180764				75	0	0	83	11	11.7021
PIPSL	0	genome.wustl.edu	37	10	95720159	95720159	+	RNA	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	95720159	95720159	C	T	SNP	PIPSL	ENST00000480546	human	ensembl	74_37	-1	putative	rna	NULL	NULL	1.000	-	-	-	no_errors	PIPSL	HGNC	ENSG00000180764				72	0	0	78	9	10.3448
PIPSL	0	genome.wustl.edu	37	10	95721152	95721152	+	RNA	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	95721152	95721152	A	G	SNP	PIPSL	ENST00000480546	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.438	-	-	-	no_errors	PIPSL	HGNC	ENSG00000180764				84	0	0	60	12	16.6667
PLCE1	0	genome.wustl.edu	37	10	96084175	96084175	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	96084175	96084175	G	A	SNP	PLCE1	ENST00000260766	human	ensembl	74_37	+1	known	missense	c.6571	p.E2191K	1.000	pfam_Ras-assoc,smart_Ras-assoc,pfscan_Ras-assoc	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_Ras-assoc,pfam_RasGRF_CDC25,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_Ras_GEF_dom,superfamily_C2_dom,smart_RasGRF_CDC25,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,smart_Ras-assoc,pfscan_C2_dom,pfscan_Ras-assoc,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,pfscan_RasGRF_CDC25,prints_Pinositol_PLipase_C	-	no_errors	PLCE1	HGNC	ENSG00000138193				281	0	0	171	60	25.974
NOC3L	0	genome.wustl.edu	37	10	96109949	96109949	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	96109949	96109949	A	G	SNP	NOC3L	ENST00000371350	human	ensembl	74_37	-1	known	missense	c.1049	p.L350S	1.000	superfamily_ARM-type_fold,pirsf_Nucleolar_cplx-assoc_3	pfam_CCAAT-binding_factor,pfam_NOC3p,superfamily_ARM-type_fold,pirsf_Nucleolar_cplx-assoc_3	-	no_errors	NOC3L	HGNC	ENSG00000173145				171	0	0	135	14	9.39597
HELLS	0	genome.wustl.edu	37	10	96313922	96313922	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	96313922	96313922	T	C	SNP	HELLS	ENST00000371332	human	ensembl	74_37	+1	known	missense	c.193	p.Y65H	1.000	NULL	pfam_SNF2_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	HELLS	HGNC	ENSG00000119969				141	0	0	108	7	6.08696
CYP2C19	0	genome.wustl.edu	37	10	96535189	96535189	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	96535189	96535189	G	A	SNP	CYP2C19	ENST00000371321	human	ensembl	74_37	+1	known	missense	c.374	p.R125H	0.957	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP2C19	HGNC	ENSG00000165841				92	0	0	101	10	9.00901
CCNJ	0	genome.wustl.edu	37	10	97817790	97817790	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	97817790	97817790	T	C	SNP	CCNJ	ENST00000465148	human	ensembl	74_37	+1	known	missense	c.944	p.V315A	0.994	NULL	pfam_Cyclin_C-dom,pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	CCNJ	HGNC	ENSG00000107443				203	1	0.490196	157	19	10.7955
CCNJ	0	genome.wustl.edu	37	10	97817887	97817887	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	97817887	97817887	G	A	SNP	CCNJ	ENST00000465148	human	ensembl	74_37	+1	known	silent	c.1041	p.G347	1.000	NULL	pfam_Cyclin_C-dom,pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	CCNJ	HGNC	ENSG00000107443				129	0	0	122	13	9.62963
DNTT	0	genome.wustl.edu	37	10	98087280	98087280	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	98087280	98087280	C	T	SNP	DNTT	ENST00000371174	human	ensembl	74_37	+1	known	silent	c.930	p.A310	0.000	smart_DNA-dir_DNA_pol_X,pirsf_TdT/Mu	pfam_DNA_pol_lambd_fingers_domain,pfam_BRCT_dom,pfam_Nucleotidyltransferase,superfamily_DNA_pol_b-like_N,superfamily_DNA_pol_lambd_fingers_domain,superfamily_BRCT_dom,smart_BRCT_dom,smart_DNA-dir_DNA_pol_X,pirsf_TdT/Mu,pfscan_BRCT_dom,prints_TdT/Mu,prints_DNA_pol_X,prints_DNA_pol_X_beta-like	-	no_errors	DNTT	HGNC	ENSG00000107447				260	0	0	183	45	19.7368
TM9SF3	0	genome.wustl.edu	37	10	98303917	98303917	+	Silent	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	98303917	98303917	T	G	SNP	TM9SF3	ENST00000371142	human	ensembl	74_37	-1	known	silent	c.1101	p.P367	0.985	pfam_EMP70	pfam_EMP70	-	no_errors	TM9SF3	HGNC	ENSG00000077147				83	0	0	44	10	18.5185
TM9SF3	0	genome.wustl.edu	37	10	98307727	98307727	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	98307727	98307727	T	C	SNP	TM9SF3	ENST00000371142	human	ensembl	74_37	-1	known	missense	c.979	p.T327A	1.000	pfam_EMP70	pfam_EMP70	-	no_errors	TM9SF3	HGNC	ENSG00000077147				136	0	0	79	7	8.13953
PIK3AP1	0	genome.wustl.edu	37	10	98355389	98355389	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	98355389	98355389	G	T	SNP	PIK3AP1	ENST00000339364	human	ensembl	74_37	-1	known	missense	c.2363	p.P788H	1.000	NULL	superfamily_Ankyrin_rpt-contain_dom	-	no_errors	PIK3AP1	HGNC	ENSG00000155629				115	1	0.862069	103	7	6.36364
LCOR	0	genome.wustl.edu	37	10	98714929	98714929	+	Silent	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	98714929	98714929	A	T	SNP	LCOR	ENST00000356016	human	ensembl	74_37	+1	known	silent	c.552	p.G184	1.000	NULL	pfam_HTH_Psq,superfamily_Homeodomain-like,pfscan_HTH_Psq	-	no_errors	LCOR	HGNC	ENSG00000196233				73	0	0	62	6	8.82353
C10orf12	0	genome.wustl.edu	37	10	98741550	98741550	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	98741550	98741550	A	G	SNP	C10orf12	ENST00000286067	human	ensembl	74_37	+1	known	missense	c.403	p.I135V	0.878	NULL	NULL	-	no_errors	C10orf12	HGNC	ENSG00000155640				84	0	0	82	7	7.86517
ARHGAP19-SLIT1	0	genome.wustl.edu	37	10	99016073	99016073	+	Splice_Site	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	99016073	99016073	A	G	SNP	ARHGAP19-SLIT1	ENST00000453547	human	ensembl	74_37	-1	known	splice_site	c.927+2	e6+2	1.000	-	-	-	no_errors	ARHGAP19-SLIT1	HGNC	ENSG00000269891				250	0	0	218	13	5.62771
RRP12	0	genome.wustl.edu	37	10	99126540	99126540	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	99126540	99126540	C	T	SNP	RRP12	ENST00000370992	human	ensembl	74_37	-1	known	silent	c.3174	p.E1058	0.015	NULL	pfam_Uncharacterised_NUC173,superfamily_ARM-type_fold	-	no_errors	RRP12	HGNC	ENSG00000052749				152	1	0.653595	126	43	25.4438
MMS19	0	genome.wustl.edu	37	10	99236709	99236709	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	99236709	99236709	G	T	SNP	MMS19	ENST00000370782	human	ensembl	74_37	-1	known	missense	c.505	p.L169I	1.000	superfamily_ARM-type_fold	pfam_Tscrpt_C,superfamily_ARM-type_fold	-	no_errors	MMS19	HGNC	ENSG00000155229				116	0	0	105	8	7.07965
UBTD1	0	genome.wustl.edu	37	10	99327773	99327773	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	99327773	99327773	C	T	SNP	UBTD1	ENST00000370664	human	ensembl	74_37	+1	known	missense	c.173	p.A58V	1.000	NULL	pfam_Ubiquitin_dom,pfam_Rad60/SUMO_like,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup,prints_Ubiquitin	-	no_errors	UBTD1	HGNC	ENSG00000165886				109	1	0.909091	98	6	5.76923
R3HCC1L	0	genome.wustl.edu	37	10	99968748	99968748	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	99968748	99968748	G	A	SNP	R3HCC1L	ENST00000370584	human	ensembl	74_37	+1	known	missense	c.877	p.A293T	0.002	NULL	NULL	-	no_errors	R3HCC1L	HGNC	ENSG00000166024				120	0	0	94	8	7.84314
R3HCC1L	0	genome.wustl.edu	37	10	99968819	99968819	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	99968819	99968819	T	C	SNP	R3HCC1L	ENST00000370584	human	ensembl	74_37	+1	known	silent	c.948	p.S316	0.103	NULL	NULL	-	no_errors	R3HCC1L	HGNC	ENSG00000166024				142	0	0	102	6	5.55556
TRPC6	0	genome.wustl.edu	37	11	101374854	101374854	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	101374854	101374854	A	G	SNP	TRPC6	ENST00000344327	human	ensembl	74_37	-1	known	silent	c.846	p.S282	0.993	pfam_TRP_dom,tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,pfam_PKD1_2_channel,superfamily_Ankyrin_rpt-contain_dom,superfamily_ARM-type_fold,smart_Ankyrin_rpt,prints_TRPC6_channel,prints_TRPC_channel,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,tigrfam_TRP_channel	-	no_errors	TRPC6	HGNC	ENSG00000137672				254	0	0	188	17	8.29268
TRPC6	0	genome.wustl.edu	37	11	101375465	101375465	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	101375465	101375465	A	G	SNP	TRPC6	ENST00000344327	human	ensembl	74_37	-1	known	silent	c.235	p.L79	0.993	NULL	pfam_Ion_trans_dom,pfam_TRP_dom,pfam_PKD1_2_channel,superfamily_Ankyrin_rpt-contain_dom,superfamily_ARM-type_fold,smart_Ankyrin_rpt,prints_TRPC6_channel,prints_TRPC_channel,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,tigrfam_TRP_channel	-	no_errors	TRPC6	HGNC	ENSG00000137672				167	0	0	124	16	11.4286
KIAA1377	0	genome.wustl.edu	37	11	101818760	101818760	+	Splice_Site	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	101818760	101818760	A	G	SNP	KIAA1377	ENST00000263468	human	ensembl	74_37	+1	known	splice_site	c.395-2	e4-2	0.617	-	-	-	no_errors	KIAA1377	HGNC	ENSG00000110318				65	0	0	49	6	10.9091
BIRC2	0	genome.wustl.edu	37	11	102248433	102248433	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	102248433	102248433	A	G	SNP	BIRC2	ENST00000227758	human	ensembl	74_37	+1	known	missense	c.1573	p.K525E	1.000	pfam_CARD,superfamily_DEATH-like_dom,smart_CARD,pfscan_CARD	pfam_BIR,pfam_CARD,superfamily_DEATH-like_dom,smart_BIR,smart_CARD,smart_Znf_RING,pfscan_CARD,pfscan_BIR,pfscan_Znf_RING	-	no_errors	BIRC2	HGNC	ENSG00000110330				66	0	0	36	6	14.2857
MMP20	0	genome.wustl.edu	37	11	102482514	102482514	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	102482514	102482514	C	T	SNP	MMP20	ENST00000260228	human	ensembl	74_37	-1	known	silent	c.495	p.A165	0.014	pirsf_Pept_M10A_Metazoans,pfam_Pept_M10_metallopeptidase,smart_Peptidase_Metallo,prints_Pept_M10A	pirsf_Pept_M10A_Metazoans,pfam_Pept_M10_metallopeptidase,pfam_Hemopexin-like_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin-like_repeat,prints_Pept_M10A	-	no_errors	MMP20	HGNC	ENSG00000137674				64	0	0	55	6	9.83607
MMP20	0	genome.wustl.edu	37	11	102487565	102487565	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	102487565	102487565	T	C	SNP	MMP20	ENST00000260228	human	ensembl	74_37	-1	known	missense	c.352	p.K118E	1.000	pirsf_Pept_M10A_Metazoans,pfam_Pept_M10_metallopeptidase,smart_Peptidase_Metallo	pirsf_Pept_M10A_Metazoans,pfam_Pept_M10_metallopeptidase,pfam_Hemopexin-like_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin-like_repeat,prints_Pept_M10A	-	no_errors	MMP20	HGNC	ENSG00000137674				45	0	0	39	4	9.30233
MMP27	0	genome.wustl.edu	37	11	102567160	102567160	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	102567160	102567160	C	T	SNP	MMP27	ENST00000260229	human	ensembl	74_37	-1	known	missense	c.844	p.D282N	0.060	superfamily_Hemopexin-like_dom,pirsf_Pept_M10A_Metazoans	pfam_Pept_M10_metallopeptidase,pfam_Hemopexin-like_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin-like_repeat,pirsf_Pept_M10A_Metazoans,prints_Pept_M10A	-	no_errors	MMP27	HGNC	ENSG00000137675				99	0	0	70	18	20.4545
MMP3	0	genome.wustl.edu	37	11	102713491	102713491	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	102713491	102713491	G	A	SNP	MMP3	ENST00000299855	human	ensembl	74_37	-1	known	missense	c.262	p.R88C	0.300	pirsf_Pept_M10A_Metazoans,superfamily_Peptidoglycan-bd-like,prints_Pept_M10A	pirsf_Pept_M10A_Metazoans,pfam_Pept_M10_metallopeptidase,pfam_Hemopexin-like_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin-like_repeat,prints_Pept_M10A	-	no_errors	MMP3	HGNC	ENSG00000149968				44	0	0	38	5	11.6279
MUC6	0	genome.wustl.edu	37	11	1027755	1027755	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	1027755	1027755	G	A	SNP	MUC6	ENST00000421673	human	ensembl	74_37	-1	known	silent	c.1911	p.G637	0.000	pfam_Unchr_dom_Cys-rich,smart_Unchr_dom_Cys-rich	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_Cys_knot_C,pfscan_Cys_knot_C	-	no_errors	MUC6	HGNC	ENSG00000184956				12	0	0	8	3	27.2727
DYNC2H1	0	genome.wustl.edu	37	11	102980475	102980475	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	102980475	102980475	G	A	SNP	DYNC2H1	ENST00000398093	human	ensembl	74_37	+1	known	missense	c.172	p.A58T	0.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DYNC2H1	HGNC	ENSG00000187240				40	0	0	22	5	18.5185
DYNC2H1	0	genome.wustl.edu	37	11	102985965	102985965	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	102985965	102985965	A	G	SNP	DYNC2H1	ENST00000398093	human	ensembl	74_37	+1	known	missense	c.562	p.K188E	1.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DYNC2H1	HGNC	ENSG00000187240				41	0	0	25	3	10.7143
DYNC2H1	0	genome.wustl.edu	37	11	103004387	103004387	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	103004387	103004387	C	T	SNP	DYNC2H1	ENST00000398093	human	ensembl	74_37	+1	known	missense	c.2057	p.A686V	1.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DYNC2H1	HGNC	ENSG00000187240				55	0	0	41	3	6.81818
DYNC2H1	0	genome.wustl.edu	37	11	103070066	103070066	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	103070066	103070066	C	A	SNP	DYNC2H1	ENST00000398093	human	ensembl	74_37	+1	known	nonsense	c.7949	p.S2650*	0.991	superfamily_P-loop_NTPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DYNC2H1	HGNC	ENSG00000187240				77	0	0	41	8	16.3265
DYNC2H1	0	genome.wustl.edu	37	11	103102032	103102032	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	103102032	103102032	C	G	SNP	DYNC2H1	ENST00000398093	human	ensembl	74_37	+1	known	missense	c.9397	p.L3133V	0.525	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DYNC2H1	HGNC	ENSG00000187240				47	0	0	29	8	21.6216
DDI1	0	genome.wustl.edu	37	11	103908242	103908242	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	103908242	103908242	T	C	SNP	DDI1	ENST00000302259	human	ensembl	74_37	+1	known	missense	c.692	p.I231T	1.000	pfam_Peptidase_aspartic_DDI1-type,superfamily_Peptidase_aspartic_dom	pfam_Peptidase_aspartic_DDI1-type,pfam_Ubiquitin_dom,pfam_RVP_2,pfam_Pept_A2A_retrovirus_sg,superfamily_Peptidase_aspartic_dom,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup	-	no_errors	DDI1	HGNC	ENSG00000170967				182	0	0	159	14	8.09249
LOC643733	0	genome.wustl.edu	37	11	104774153	104774153	+	RNA	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	104774153	104774153	C	A	SNP	LOC643733	ENST00000527637	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-693N9.2	Clone_based_vega_gene	ENSG00000235505				26	0	0	10	5	33.3333
CASP4	0	genome.wustl.edu	37	11	104821692	104821692	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	104821692	104821692	A	G	SNP	CASP4	ENST00000444739	human	ensembl	74_37	-1	known	missense	c.506	p.L169P	0.160	pfam_Pept_C14_caspase,smart_Pept_C14A_p45_core,pirsf_Caspase_IL-1_beta,pfscan_Pept_C14_ICE_p20,prints_Pept_C14A_p45_core	pfam_Pept_C14_caspase,pfam_CARD,superfamily_DEATH-like_dom,smart_CARD,smart_Pept_C14A_p45_core,pirsf_Caspase_IL-1_beta,pfscan_CARD,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20,prints_Pept_C14A_p45_core	-	no_errors	CASP4	HGNC	ENSG00000196954				76	0	0	47	9	16.0714
CASP5	0	genome.wustl.edu	37	11	104869751	104869751	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	104869751	104869751	T	G	SNP	CASP5	ENST00000393141	human	ensembl	74_37	-1	known	missense	c.996	p.K332N	0.000	pfam_Pept_C14_caspase,smart_Pept_C14A_p45_core,pirsf_Caspase_IL-1_beta,pfscan_Pept_C14_ICE_p20	pfam_Pept_C14_caspase,pfam_CARD,superfamily_DEATH-like_dom,smart_CARD,smart_Pept_C14A_p45_core,pirsf_Caspase_IL-1_beta,pfscan_CARD,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20,prints_Pept_C14A_p45_core	-	no_errors	CASP5	HGNC	ENSG00000137757				96	0	0	93	7	7
GRIA4	0	genome.wustl.edu	37	11	105845262	105845262	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	105845262	105845262	A	G	SNP	GRIA4	ENST00000393127	human	ensembl	74_37	+1	known	missense	c.2635	p.T879A	1.000	NULL	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIA4	HGNC	ENSG00000152578				60	0	0	48	5	9.43396
LYVE1	0	genome.wustl.edu	37	11	10585563	10585563	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	10585563	10585563	C	T	SNP	LYVE1	ENST00000256178	human	ensembl	74_37	-1	known	silent	c.321	p.G107	0.998	pfam_Link,superfamily_C-type_lectin_fold,smart_Link,pfscan_Link	pfam_Link,superfamily_C-type_lectin_fold,smart_Link,pfscan_Link,prints_Link	-	no_errors	LYVE1	HGNC	ENSG00000133800				63	0	0	49	4	7.54717
KBTBD3	0	genome.wustl.edu	37	11	105924271	105924271	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	105924271	105924271	T	A	SNP	KBTBD3	ENST00000526793	human	ensembl	74_37	-1	known	missense	c.1145	p.D382V	0.995	smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_BACK,pfam_BTB_POZ,pfam_Kelch_1,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KBTBD3	HGNC	ENSG00000182359				61	0	0	53	5	8.62069
SLC35F2	0	genome.wustl.edu	37	11	107682454	107682454	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	107682454	107682454	T	A	SNP	SLC35F2	ENST00000429869	human	ensembl	74_37	-1	known	missense	c.353	p.D118V	1.000	pfam_SLC35_F1/F2/F6,pfam_UAA	pfam_SLC35_F1/F2/F6,pfam_DMT,pfam_UAA,pfam_Tpt_PEP_trans_dom	-	no_errors	SLC35F2	HGNC	ENSG00000110660				195	0	0	149	10	6.28931
CUL5	0	genome.wustl.edu	37	11	107917050	107917050	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	107917050	107917050	A	G	SNP	CUL5	ENST00000393094	human	ensembl	74_37	+1	known	missense	c.188	p.Q63R	1.000	pfam_Cullin_N,superfamily_Cullin_repeat-like_dom	pfam_Cullin_N,pfam_Cullin_neddylation_domain,superfamily_Cullin_repeat-like_dom,superfamily_Cullin_homology,smart_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL5	HGNC	ENSG00000166266				82	0	0	57	8	12.3077
CTR9	0	genome.wustl.edu	37	11	10800338	10800338	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	10800338	10800338	G	T	SNP	CTR9	ENST00000361367	human	ensembl	74_37	+1	known	missense	c.3208	p.A1070S	1.000	NULL	pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	CTR9	HGNC	ENSG00000198730				43	0	0	48	3	5.88235
ATM	0	genome.wustl.edu	37	11	108155161	108155161	+	Silent	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	108155161	108155161	C	A	SNP	ATM	ENST00000278616	human	ensembl	74_37	+1	known	silent	c.3954	p.V1318	0.999	superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_TAN,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATM	HGNC	ENSG00000149311				85	0	0	55	19	25.6757
ATM	0	genome.wustl.edu	37	11	108199851	108199851	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	108199851	108199851	A	G	SNP	ATM	ENST00000278616	human	ensembl	74_37	+1	known	missense	c.7193	p.Y2398C	1.000	pfam_PIK-rel_kinase_FAT,superfamily_ARM-type_fold,pfscan_PIK_FAT	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_TAN,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATM	HGNC	ENSG00000149311				56	0	0	37	5	11.9048
EXPH5	0	genome.wustl.edu	37	11	108381885	108381885	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	108381885	108381885	C	T	SNP	EXPH5	ENST00000265843	human	ensembl	74_37	-1	known	missense	c.4349	p.S1450N	0.001	NULL	superfamily_Znf_FYVE_PHD,pfscan_Znf_FYVE-typ	-	no_errors	EXPH5	HGNC	ENSG00000110723				69	0	0	53	4	7.01754
DDX10	0	genome.wustl.edu	37	11	108547842	108547842	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	108547842	108547842	A	G	SNP	DDX10	ENST00000322536	human	ensembl	74_37	+1	known	missense	c.409	p.T137A	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX10	HGNC	ENSG00000178105				101	0	0	90	10	10
MUC2	0	genome.wustl.edu	37	11	1086052	1086052	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	1086052	1086052	G	A	SNP	MUC2	ENST00000441003	human	ensembl	74_37	+1	known	silent	c.2892	p.T964	0.000	pfam_VWF_type-D,smart_VWF_type-D	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,superfamily_Prot_inh_PMP,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC2	HGNC	ENSG00000198788				39	0	0	21	9	30
MUC2	0	genome.wustl.edu	37	11	1093612	1093612	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	1093612	1093612	C	A	SNP	MUC2	ENST00000441003	human	ensembl	74_37	+1	known	missense	c.5431	p.P1811T	0.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,superfamily_Prot_inh_PMP,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC2	HGNC	ENSG00000198788				50	0	0	48	6	11.1111
ZC3H12C	0	genome.wustl.edu	37	11	110035934	110035934	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	110035934	110035934	G	A	SNP	ZC3H12C	ENST00000278590	human	ensembl	74_37	+1	known	silent	c.2124	p.L708	0.803	NULL	pfam_RNase_Zc3h12	-	no_errors	ZC3H12C	HGNC	ENSG00000149289				228	0	0	166	48	22.4299
SIK2	0	genome.wustl.edu	37	11	111593434	111593434	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	111593434	111593434	T	C	SNP	SIK2	ENST00000304987	human	ensembl	74_37	+1	known	missense	c.2101	p.C701R	1.000	pirsf_Ser/Thr_kinase_SIK1/2	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ser/Thr_kinase_SIK1/2,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	SIK2	HGNC	ENSG00000170145				139	0	0	114	7	5.78512
FDXACB1	0	genome.wustl.edu	37	11	111745746	111745746	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	111745746	111745746	T	C	SNP	FDXACB1	ENST00000260257	human	ensembl	74_37	-1	known	missense	c.1775	p.Y592C	1.000	pfam_PheS_beta_Fdx_antiC-bd,superfamily_PheS_beta_Fdx_antiC-bd,smart_PheS_beta_Fdx_antiC-bd	pfam_DUF2431,pfam_PheS_beta_Fdx_antiC-bd,superfamily_PheS_beta_Fdx_antiC-bd,smart_PheS_beta_Fdx_antiC-bd	-	no_errors	FDXACB1	HGNC	ENSG00000255561				50	0	0	41	6	12.766
DIXDC1	0	genome.wustl.edu	37	11	111888543	111888543	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	111888543	111888543	T	C	SNP	DIXDC1	ENST00000440460	human	ensembl	74_37	+1	known	silent	c.1902	p.D634	1.000	pfam_DIX,smart_DIX,pfscan_DIX	pfam_DIX,pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_DIX,pfscan_CH-domain,pfscan_DIX	-	no_errors	DIXDC1	HGNC	ENSG00000150764				39	0	0	33	4	10.8108
BCO2	0	genome.wustl.edu	37	11	112071468	112071468	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	112071468	112071468	T	C	SNP	BCO2	ENST00000357685	human	ensembl	74_37	+1	known	missense	c.998	p.F333S	1.000	pfam_Carotenoid_Oase	pfam_Carotenoid_Oase	-	no_errors	BCO2	HGNC	ENSG00000197580				145	0	0	111	6	5.12821
NCAM1	0	genome.wustl.edu	37	11	113085138	113085138	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	113085138	113085138	G	A	SNP	NCAM1	ENST00000316851	human	ensembl	74_37	+1	known	missense	c.934	p.E312K	1.000	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom,prints_Neural_cell_adh	-	no_errors	NCAM1	HGNC	ENSG00000149294				44	0	0	48	4	7.69231
NCAM1	0	genome.wustl.edu	37	11	113105824	113105824	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	113105824	113105824	C	T	SNP	NCAM1	ENST00000316851	human	ensembl	74_37	+1	known	missense	c.1733	p.A578V	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom,prints_Neural_cell_adh	-	no_errors	NCAM1	HGNC	ENSG00000149294				17	0	0	13	4	23.5294
TTC12	0	genome.wustl.edu	37	11	113210045	113210045	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	113210045	113210045	C	T	SNP	TTC12	ENST00000314756	human	ensembl	74_37	+1	known	silent	c.675	p.D225	0.309	superfamily_ARM-type_fold	pfam_TPR_1,superfamily_ARM-type_fold,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC12	HGNC	ENSG00000149292				101	0	0	84	9	9.67742
DRD2	0	genome.wustl.edu	37	11	113283413	113283413	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	113283413	113283413	G	T	SNP	DRD2	ENST00000355319	human	ensembl	74_37	-1	known	missense	c.1009	p.P337T	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Dopamine_D2_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Dopamine_D2_rcpt,prints_GPCR_Rhodpsn,prints_Dopamine_rcpt	-	no_errors	DRD2	HGNC	ENSG00000149295				100	1	0.990099	70	8	10.2564
DRD2	0	genome.wustl.edu	37	11	113295153	113295153	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	113295153	113295153	A	T	SNP	DRD2	ENST00000355319	human	ensembl	74_37	-1	known	missense	c.221	p.V74D	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Dopamine_D2_rcpt,prints_GPCR_Rhodpsn,prints_Dopamine_rcpt	-	no_errors	DRD2	HGNC	ENSG00000149295				50	0	0	52	6	10.3448
ATF4P4	0	genome.wustl.edu	37	11	113660315	113660315	+	RNA	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	113660315	113660315	G	A	SNP	ATF4P4	ENST00000393544	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	ATF4P4	HGNC	ENSG00000256167				15	0	0	10	3	23.0769
USP28	0	genome.wustl.edu	37	11	113672347	113672347	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	113672347	113672347	T	C	SNP	USP28	ENST00000003302	human	ensembl	74_37	-1	known	silent	c.2916	p.V972	0.049	NULL	pfam_Peptidase_C19/C67,superfamily_UBA-like,pfscan_Peptidase_C19/C67	-	no_errors	USP28	HGNC	ENSG00000048028				66	0	0	53	3	5.35714
USP28	0	genome.wustl.edu	37	11	113700038	113700038	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	113700038	113700038	C	T	SNP	USP28	ENST00000003302	human	ensembl	74_37	-1	known	missense	c.940	p.G314S	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,superfamily_UBA-like,pfscan_Peptidase_C19/C67	-	no_errors	USP28	HGNC	ENSG00000048028				85	0	0	67	5	6.94444
USP28	0	genome.wustl.edu	37	11	113700069	113700069	+	Splice_Site	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	113700069	113700069	T	C	SNP	USP28	ENST00000003302	human	ensembl	74_37	-1	known	splice_site	c.911-2	e10-2	1.000	-	-	-	no_errors	USP28	HGNC	ENSG00000048028				76	0	0	55	6	9.83607
CSNK2A3	0	genome.wustl.edu	37	11	11373807	11373807	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	11373807	11373807	C	T	SNP	CSNK2A3	ENST00000528848	human	ensembl	74_37	-1	novel	missense	c.860	p.S287N	1.000	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Aminoglycoside_PTrfase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CSNK2A3	HGNC	ENSG00000254598				96	0	0	65	23	26.1364
HTR3A	0	genome.wustl.edu	37	11	113857522	113857522	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	113857522	113857522	C	A	SNP	HTR3A	ENST00000355556	human	ensembl	74_37	+1	known	missense	c.1006	p.L336I	0.003	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_5HT3_rcpt_A,prints_5HT3_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	HTR3A	HGNC	ENSG00000166736				87	0	0	87	6	6.45161
ZBTB16	0	genome.wustl.edu	37	11	114112918	114112918	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	114112918	114112918	T	G	SNP	ZBTB16	ENST00000335953	human	ensembl	74_37	+1	known	missense	c.1483	p.C495G	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB16	HGNC	ENSG00000109906				26	0	0	25	4	13.7931
ZBTB16	0	genome.wustl.edu	37	11	114121139	114121139	+	Silent	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	114121139	114121139	G	T	SNP	ZBTB16	ENST00000335953	human	ensembl	74_37	+1	known	silent	c.1884	p.S628	0.999	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB16	HGNC	ENSG00000109906				60	0	0	53	3	5.35714
NXPE1	0	genome.wustl.edu	37	11	114392823	114392823	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	114392823	114392823	T	A	SNP	NXPE1	ENST00000424269	human	ensembl	74_37	-1	known	missense	c.1511	p.D504V	0.866	NULL	pfam_NXPH/NXPE,superfamily_Ig_E-set	-	no_errors	NXPE1	HGNC	ENSG00000095110				110	0	0	71	7	8.97436
NXPE1	0	genome.wustl.edu	37	11	114401086	114401086	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	114401086	114401086	T	C	SNP	NXPE1	ENST00000424269	human	ensembl	74_37	-1	known	missense	c.644	p.H215R	0.005	pfam_NXPH/NXPE	pfam_NXPH/NXPE,superfamily_Ig_E-set	-	no_errors	NXPE1	HGNC	ENSG00000095110				128	0	0	89	5	5.31915
NXPE1	0	genome.wustl.edu	37	11	114401399	114401399	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	114401399	114401399	T	G	SNP	NXPE1	ENST00000424269	human	ensembl	74_37	-1	known	missense	c.331	p.T111P	0.000	superfamily_Ig_E-set	pfam_NXPH/NXPE,superfamily_Ig_E-set	-	no_errors	NXPE1	HGNC	ENSG00000095110				95	0	0	103	6	5.50459
APOA5	0	genome.wustl.edu	37	11	116661462	116661462	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	116661462	116661462	C	A	SNP	APOA5	ENST00000227665	human	ensembl	74_37	-1	known	missense	c.483	p.Q161H	0.956	pfam_ApoA1_A4_E	pfam_ApoA1_A4_E	-	no_errors	APOA5	HGNC	ENSG00000110243				43	0	0	64	8	11.1111
APOA5	0	genome.wustl.edu	37	11	116661593	116661593	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	116661593	116661593	C	T	SNP	APOA5	ENST00000227665	human	ensembl	74_37	-1	known	missense	c.352	p.V118M	0.954	pfam_ApoA1_A4_E	pfam_ApoA1_A4_E	-	no_errors	APOA5	HGNC	ENSG00000110243				82	0	0	77	6	7.22892
APOA1	0	genome.wustl.edu	37	11	116707117	116707117	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	116707117	116707117	G	T	SNP	APOA1	ENST00000236850	human	ensembl	74_37	-1	known	missense	c.211	p.L71I	0.000	pfam_ApoA1_A4_E	pfam_ApoA1_A4_E	-	no_errors	APOA1	HGNC	ENSG00000118137				51	0	0	49	4	7.54717
SIK3	0	genome.wustl.edu	37	11	116744247	116744247	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	116744247	116744247	G	A	SNP	SIK3	ENST00000375300	human	ensembl	74_37	-1	known	nonsense	c.1687	p.Q563*	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom	-	no_errors	SIK3	HGNC	ENSG00000160584				65	0	0	56	4	6.66667
SIK3	0	genome.wustl.edu	37	11	116767020	116767020	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	116767020	116767020	G	A	SNP	SIK3	ENST00000375300	human	ensembl	74_37	-1	known	missense	c.814	p.R272W	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom	-	no_errors	SIK3	HGNC	ENSG00000160584				116	0	0	95	8	7.76699
PAFAH1B2	0	genome.wustl.edu	37	11	117038342	117038342	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	117038342	117038342	G	A	SNP	PAFAH1B2	ENST00000527958	human	ensembl	74_37	+1	known	missense	c.617	p.C206Y	1.000	pfam_Lipase_GDSL	pfam_Lipase_GDSL	-	no_errors	PAFAH1B2	HGNC	ENSG00000168092				66	0	0	51	5	8.92857
SIDT2	0	genome.wustl.edu	37	11	117066583	117066583	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	117066583	117066583	C	T	SNP	SIDT2	ENST00000278951	human	ensembl	74_37	+1	known	silent	c.2451	p.H817	1.000	NULL	NULL	-	no_errors	SIDT2	HGNC	ENSG00000149577				242	0	0	170	35	17.0732
TAGLN	0	genome.wustl.edu	37	11	117074585	117074585	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	117074585	117074585	C	T	SNP	TAGLN	ENST00000392951	human	ensembl	74_37	+1	known	missense	c.446	p.P149L	1.000	superfamily_CH-domain	pfam_CH-domain,pfam_Calponin_repeat,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain,pfscan_Calponin_repeat,prints_SM22_calponin	-	no_errors	TAGLN	HGNC	ENSG00000149591				58	0	0	50	3	5.66038
PCSK7	0	genome.wustl.edu	37	11	117089225	117089225	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	117089225	117089225	C	A	SNP	PCSK7	ENST00000320934	human	ensembl	74_37	-1	known	missense	c.1491	p.K497N	1.000	superfamily_Galactose-bd-like	pfam_Peptidase_S8/S53_dom,pfam_PrprotnconvertsP,superfamily_Peptidase_S8/S53_dom,superfamily_Galactose-bd-like,superfamily_Prot_inh_propept,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK7	HGNC	ENSG00000160613				159	0	0	137	8	5.51724
RNF214	0	genome.wustl.edu	37	11	117152804	117152804	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	117152804	117152804	T	C	SNP	RNF214	ENST00000300650	human	ensembl	74_37	+1	known	silent	c.1530	p.N510	0.979	NULL	pfscan_Znf_RING	-	no_errors	RNF214	HGNC	ENSG00000167257				160	0	0	186	14	7
RNF214	0	genome.wustl.edu	37	11	117155864	117155864	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	117155864	117155864	A	T	SNP	RNF214	ENST00000300650	human	ensembl	74_37	+1	known	missense	c.2109	p.K703N	1.000	NULL	pfscan_Znf_RING	-	no_errors	RNF214	HGNC	ENSG00000167257				112	0	0	83	11	11.7021
DSCAML1	0	genome.wustl.edu	37	11	117310647	117310647	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	117310647	117310647	C	T	SNP	DSCAML1	ENST00000321322	human	ensembl	74_37	-1	known	missense	c.4048	p.A1350T	1.000	pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	DSCAML1	HGNC	ENSG00000177103				99	0	0	102	7	6.42202
DSCAML1	0	genome.wustl.edu	37	11	117351946	117351946	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	117351946	117351946	A	G	SNP	DSCAML1	ENST00000321322	human	ensembl	74_37	-1	known	missense	c.2779	p.C927R	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	DSCAML1	HGNC	ENSG00000177103				74	0	0	71	6	7.79221
DSCAML1	0	genome.wustl.edu	37	11	117376239	117376239	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	117376239	117376239	G	A	SNP	DSCAML1	ENST00000321322	human	ensembl	74_37	-1	known	silent	c.2172	p.N724	0.186	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	DSCAML1	HGNC	ENSG00000177103				83	0	0	67	20	22.9885
MPZL3	0	genome.wustl.edu	37	11	118106262	118106262	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	118106262	118106262	A	G	SNP	MPZL3	ENST00000278949	human	ensembl	74_37	-1	known	missense	c.494	p.L165P	0.604	NULL	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom,prints_Myelin_P0	-	no_errors	MPZL3	HGNC	ENSG00000160588				97	0	0	89	6	6.31579
KMT2A	0	genome.wustl.edu	37	11	118359369	118359369	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	118359369	118359369	T	C	SNP	KMT2A	ENST00000389506	human	ensembl	74_37	+1	known	missense	c.4373	p.F1458S	1.000	superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pirsf_MeTrfase_trithorax,pfscan_Znf_PHD-finger	pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_Bromodomain,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pirsf_MeTrfase_trithorax,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC,pfscan_Bromodomain	-	no_errors	KMT2A	HGNC	ENSG00000118058				105	0	0	59	7	10.6061
TMEM25	0	genome.wustl.edu	37	11	118403848	118403848	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	118403848	118403848	G	A	SNP	TMEM25	ENST00000533102	human	ensembl	74_37	+1	known	missense	c.599	p.R200H	1.000	NULL	pfam_CD80_C2-set,pfscan_Ig-like_dom	-	no_errors	TMEM25	HGNC	ENSG00000149582				37	0	0	32	7	17.9487
PHLDB1	0	genome.wustl.edu	37	11	118498590	118498590	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	118498590	118498590	C	T	SNP	PHLDB1	ENST00000361417	human	ensembl	74_37	+1	known	missense	c.1051	p.R351W	0.998	NULL	pfam_Pleckstrin_homology,superfamily_SMAD_FHA_domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PHLDB1	HGNC	ENSG00000019144				40	0	0	32	5	13.5135
HYOU1	0	genome.wustl.edu	37	11	118919507	118919507	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	118919507	118919507	A	G	SNP	HYOU1	ENST00000404233	human	ensembl	74_37	-1	known	missense	c.2084	p.M695T	0.994	pfam_Hsp_70_fam	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HYOU1	HGNC	ENSG00000149428				73	0	0	62	7	10.1449
HYOU1	0	genome.wustl.edu	37	11	118922291	118922291	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	118922291	118922291	A	G	SNP	HYOU1	ENST00000404233	human	ensembl	74_37	-1	known	missense	c.1385	p.L462P	1.000	pfam_Hsp_70_fam	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HYOU1	HGNC	ENSG00000149428				79	0	0	74	7	8.64198
MCAM	0	genome.wustl.edu	37	11	119185585	119185585	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	119185585	119185585	G	A	SNP	MCAM	ENST00000264036	human	ensembl	74_37	-1	known	missense	c.358	p.R120C	0.586	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Immunoglobulin,pfam_CD80_C2-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	MCAM	HGNC	ENSG00000076706				60	0	0	54	11	16.9231
RNF26	0	genome.wustl.edu	37	11	119205959	119205959	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	119205959	119205959	G	A	SNP	RNF26	ENST00000311413	human	ensembl	74_37	+1	known	missense	c.127	p.V43I	1.000	NULL	pfscan_Znf_RING	-	no_errors	RNF26	HGNC	ENSG00000173456				109	0	0	106	21	16.5354
MFRP	0	genome.wustl.edu	37	11	119217211	119217211	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	119217211	119217211	A	G	SNP	MFRP	ENST00000449574	human	ensembl	74_37	-1	known	missense	c.13	p.S5P	0.955	NULL	pfam_CUB_dom,pfam_Frizzled_dom,pfam_LDrepeatLR_classA_rpt,superfamily_CUB_dom,superfamily_Frizzled_dom,superfamily_LDrepeatLR_classA_rpt,smart_CUB_dom,smart_LDrepeatLR_classA_rpt,smart_Frizzled_dom,pfscan_CUB_dom,pfscan_Frizzled_dom,pfscan_LDrepeatLR_classA_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	MFRP	HGNC	ENSG00000235718				96	0	0	77	7	8.33333
USP2	0	genome.wustl.edu	37	11	119243939	119243939	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	119243939	119243939	G	A	SNP	USP2	ENST00000260187	human	ensembl	74_37	-1	known	silent	c.252	p.D84	0.231	NULL	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP2	HGNC	ENSG00000036672				98	0	0	91	32	26.0163
USP47	0	genome.wustl.edu	37	11	11944340	11944340	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	11944340	11944340	A	T	SNP	USP47	ENST00000399455	human	ensembl	74_37	+1	known	missense	c.1348	p.M450L	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP47	HGNC	ENSG00000170242				55	0	0	41	3	6.81818
PVRL1	0	genome.wustl.edu	37	11	119549446	119549446	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	119549446	119549446	C	T	SNP	PVRL1	ENST00000264025	human	ensembl	74_37	-1	known	missense	c.109	p.D37N	1.000	smart_Ig_sub,pfscan_Ig-like_dom	pfam_CD80_C2-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	PVRL1	HGNC	ENSG00000110400				20	0	0	26	3	10.3448
POU2F3	0	genome.wustl.edu	37	11	120169101	120169101	+	Splice_Site	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	120169101	120169101	T	C	SNP	POU2F3	ENST00000260264	human	ensembl	74_37	+1	known	splice_site	c.264+2	e4+2	0.001	-	-	-	no_errors	POU2F3	HGNC	ENSG00000137709				111	0	0	116	9	7.2
ARHGEF12	0	genome.wustl.edu	37	11	120319906	120319906	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	120319906	120319906	G	A	SNP	ARHGEF12	ENST00000356641	human	ensembl	74_37	+1	known	missense	c.1769	p.R590H	0.999	NULL	pfam_RGS-like_dom,pfam_DH-domain,pfam_PDZ,superfamily_Regulat_G_prot_signal_superfam,superfamily_DH-domain,superfamily_PDZ,smart_PDZ,smart_DH-domain,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF12	HGNC	ENSG00000196914				47	0	0	43	7	14
TECTA	0	genome.wustl.edu	37	11	120996433	120996433	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	120996433	120996433	C	T	SNP	TECTA	ENST00000264037	human	ensembl	74_37	+1	known	silent	c.1626	p.D542	1.000	pfam_Unchr_dom_Cys-rich,smart_Unchr_dom_Cys-rich	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_ZP_dom,pfam_Nidogen_extracell_dom,pfam_TIL_dom,superfamily_TIL_dom,smart_Nidogen_extracell_dom,smart_VWC_out,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EG-like_dom,smart_ZP_dom,pfscan_ZP_dom	-	no_errors	TECTA	HGNC	ENSG00000109927				147	0	0	123	14	10.219
TECTA	0	genome.wustl.edu	37	11	120998788	120998788	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	120998788	120998788	G	A	SNP	TECTA	ENST00000264037	human	ensembl	74_37	+1	known	missense	c.2102	p.G701D	1.000	smart_VWC_out	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_ZP_dom,pfam_Nidogen_extracell_dom,pfam_TIL_dom,superfamily_TIL_dom,smart_Nidogen_extracell_dom,smart_VWC_out,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EG-like_dom,smart_ZP_dom,pfscan_ZP_dom	-	no_errors	TECTA	HGNC	ENSG00000109927				44	0	0	61	10	14.0845
SORL1	0	genome.wustl.edu	37	11	121429410	121429410	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	121429410	121429410	G	A	SNP	SORL1	ENST00000260197	human	ensembl	74_37	+1	known	missense	c.2774	p.G925D	1.000	pfam_LDLR_classB_rpt,smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_Fibronectin_type3,pfam_LDLR_classB_rpt,superfamily_Fibronectin_type3,superfamily_LDrepeatLR_classA_rpt,smart_VPS10,smart_LDLR_classB_rpt,smart_LDrepeatLR_classA_rpt,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	SORL1	HGNC	ENSG00000137642				138	0	0	97	34	25.9542
SORL1	0	genome.wustl.edu	37	11	121454212	121454212	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	121454212	121454212	G	A	SNP	SORL1	ENST00000260197	human	ensembl	74_37	+1	known	missense	c.3626	p.G1209E	1.000	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt,prints_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_Fibronectin_type3,pfam_LDLR_classB_rpt,superfamily_Fibronectin_type3,superfamily_LDrepeatLR_classA_rpt,smart_VPS10,smart_LDLR_classB_rpt,smart_LDrepeatLR_classA_rpt,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	SORL1	HGNC	ENSG00000137642				42	0	0	41	6	12.766
MUC5AC	0	genome.wustl.edu	37	11	1214834	1214834	+	RNA	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	1214834	1214834	G	A	SNP	MUC5AC	ENST00000358378	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.001	-	-	-	no_errors	MUC5AC	HGNC	ENSG00000215182				28	0	0	28	4	12.5
C11orf63	0	genome.wustl.edu	37	11	122756903	122756903	+	Splice_Site	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	122756903	122756903	T	C	SNP	C11orf63	ENST00000227349	human	ensembl	74_37	+1	known	splice_site	c.344+2	e1+2	1.000	-	-	-	no_errors	C11orf63	HGNC	ENSG00000109944				47	0	0	45	8	15.0943
C11orf63	0	genome.wustl.edu	37	11	122774952	122774952	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	122774952	122774952	T	A	SNP	C11orf63	ENST00000227349	human	ensembl	74_37	+1	known	missense	c.664	p.S222T	0.992	NULL	NULL	-	no_errors	C11orf63	HGNC	ENSG00000109944				133	0	0	108	11	9.2437
C11orf63	0	genome.wustl.edu	37	11	122774956	122774956	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	122774956	122774956	G	A	SNP	C11orf63	ENST00000227349	human	ensembl	74_37	+1	known	missense	c.668	p.S223N	0.006	NULL	NULL	-	no_errors	C11orf63	HGNC	ENSG00000109944				132	0	0	114	11	8.8
HSPA8	0	genome.wustl.edu	37	11	122929501	122929501	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	122929501	122929501	T	C	SNP	HSPA8	ENST00000534624	human	ensembl	74_37	-1	known	missense	c.1361	p.N454S	1.000	pfam_Hsp_70_fam	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPA8	HGNC	ENSG00000109971				76	0	0	67	6	8.21918
MICALCL	0	genome.wustl.edu	37	11	12315220	12315220	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	12315220	12315220	A	G	SNP	MICALCL	ENST00000256186	human	ensembl	74_37	+1	known	missense	c.242	p.Y81C	0.018	NULL	pfam_DUF3585,smart_ProQ/FinO	-	no_errors	MICALCL	HGNC	ENSG00000133808				151	0	0	178	11	5.82011
MICALCL	0	genome.wustl.edu	37	11	12316135	12316135	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	12316135	12316135	C	T	SNP	MICALCL	ENST00000256186	human	ensembl	74_37	+1	known	missense	c.1157	p.A386V	0.000	smart_ProQ/FinO	pfam_DUF3585,smart_ProQ/FinO	-	no_errors	MICALCL	HGNC	ENSG00000133808				183	0	0	158	18	10.2273
OR8D4	0	genome.wustl.edu	37	11	123777391	123777391	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	123777391	123777391	T	G	SNP	OR8D4	ENST00000321355	human	ensembl	74_37	+1	known	missense	c.253	p.F85V	0.199	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8D4	HGNC	ENSG00000181518				328	0	0	236	20	7.8125
OR10G4	0	genome.wustl.edu	37	11	123886822	123886822	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	123886822	123886822	C	T	SNP	OR10G4	ENST00000320891	human	ensembl	74_37	+1	known	missense	c.541	p.P181S	0.006	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10G4	HGNC	ENSG00000254737				183	0	0	162	13	7.42857
OR10G8	0	genome.wustl.edu	37	11	123900356	123900356	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	123900356	123900356	G	A	SNP	OR10G8	ENST00000431524	human	ensembl	74_37	+1	known	silent	c.27	p.A9	0.001	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10G8	HGNC	ENSG00000234560				126	0	0	151	14	8.48485
VWA5A	0	genome.wustl.edu	37	11	124016061	124016061	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	124016061	124016061	G	A	SNP	VWA5A	ENST00000392748	human	ensembl	74_37	+1	known	missense	c.2272	p.A758T	0.000	NULL	pfam_VIT,pfam_VWF_A,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	VWA5A	HGNC	ENSG00000110002				50	0	0	61	6	8.95522
OR8B2	0	genome.wustl.edu	37	11	124253182	124253182	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	124253182	124253182	G	A	SNP	OR8B2	ENST00000375013	human	ensembl	74_37	-1	known	missense	c.58	p.H20Y	0.000	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8B2	HGNC	ENSG00000204293				163	0	0	109	19	14.8438
OR8B8	0	genome.wustl.edu	37	11	124310559	124310559	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	124310559	124310559	A	G	SNP	OR8B8	ENST00000328064	human	ensembl	74_37	-1	known	silent	c.423	p.C141	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8B8	HGNC	ENSG00000197125				57	0	0	39	14	26.4151
OR8B8	0	genome.wustl.edu	37	11	124310909	124310909	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	124310909	124310909	T	A	SNP	OR8B8	ENST00000328064	human	ensembl	74_37	-1	known	missense	c.73	p.I25F	0.658	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8B8	HGNC	ENSG00000197125				68	0	0	58	6	9.375
OR8B12	0	genome.wustl.edu	37	11	124413100	124413100	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	124413100	124413100	C	T	SNP	OR8B12	ENST00000306842	human	ensembl	74_37	-1	known	missense	c.451	p.G151R	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR8B12	HGNC	ENSG00000170953				89	0	0	102	11	9.73451
OR8B12	0	genome.wustl.edu	37	11	124413431	124413431	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	124413431	124413431	C	T	SNP	OR8B12	ENST00000306842	human	ensembl	74_37	-1	known	silent	c.120	p.G40	0.833	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR8B12	HGNC	ENSG00000170953				76	0	0	79	13	14.1304
VSIG2	0	genome.wustl.edu	37	11	124618372	124618372	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	124618372	124618372	C	T	SNP	VSIG2	ENST00000326621	human	ensembl	74_37	-1	known	silent	c.765	p.L255	0.629	NULL	pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	VSIG2	HGNC	ENSG00000019102				64	0	0	53	9	14.5161
ESAM	0	genome.wustl.edu	37	11	124628331	124628331	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	124628331	124628331	T	C	SNP	ESAM	ENST00000278927	human	ensembl	74_37	-1	known	missense	c.163	p.T55A	0.888	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	ESAM	HGNC	ENSG00000149564				40	0	0	36	7	16.2791
MSANTD2	0	genome.wustl.edu	37	11	124637844	124637844	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	124637844	124637844	T	C	SNP	MSANTD2	ENST00000374979	human	ensembl	74_37	-1	known	missense	c.908	p.D303G	1.000	NULL	NULL	-	no_errors	MSANTD2	HGNC	ENSG00000120458				122	0	0	80	10	11.1111
ROBO4	0	genome.wustl.edu	37	11	124766208	124766208	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	124766208	124766208	C	A	SNP	ROBO4	ENST00000306534	human	ensembl	74_37	-1	known	missense	c.565	p.G189W	0.000	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	ROBO4	HGNC	ENSG00000154133				78	0	0	103	9	8.03571
HEPACAM	0	genome.wustl.edu	37	11	124794859	124794859	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	124794859	124794859	C	T	SNP	HEPACAM	ENST00000298251	human	ensembl	74_37	-1	known	silent	c.192	p.R64	1.000	pfam_Ig_V-set,smart_Ig_sub	pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	HEPACAM	HGNC	ENSG00000165478				60	0	0	58	5	7.93651
CCDC15	0	genome.wustl.edu	37	11	124857077	124857077	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	124857077	124857077	C	A	SNP	CCDC15	ENST00000344762	human	ensembl	74_37	+1	known	missense	c.955	p.Q319K	0.000	NULL	NULL	-	no_errors	CCDC15	HGNC	ENSG00000149548				87	0	0	72	6	7.69231
SLC37A2	0	genome.wustl.edu	37	11	124954765	124954765	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	124954765	124954765	C	T	SNP	SLC37A2	ENST00000298280	human	ensembl	74_37	+1	known	missense	c.1084	p.H362Y	1.000	pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC37A2	HGNC	ENSG00000134955				28	0	0	26	3	10.3448
CHEK1	0	genome.wustl.edu	37	11	125505378	125505378	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	125505378	125505378	A	G	SNP	CHEK1	ENST00000438015	human	ensembl	74_37	+1	known	missense	c.668	p.E223G	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CHEK1	HGNC	ENSG00000149554				174	0	0	104	20	16.129
ACRV1	0	genome.wustl.edu	37	11	125547886	125547886	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	125547886	125547886	G	A	SNP	ACRV1	ENST00000533904	human	ensembl	74_37	-1	known	missense	c.359	p.S120L	0.058	NULL	NULL	-	no_errors	ACRV1	HGNC	ENSG00000134940				162	0	0	155	10	6.06061
PUS3	0	genome.wustl.edu	37	11	125765945	125765945	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	125765945	125765945	A	C	SNP	PUS3	ENST00000227474	human	ensembl	74_37	-1	known	missense	c.235	p.F79V	1.000	pfam_PsdUridine_synth_TruA_a/b_dom,superfamily_PsdUridine_synth_cat_dom,tigrfam_PsdUridine_synth_TruA	pfam_PsdUridine_synth_TruA_a/b_dom,superfamily_PsdUridine_synth_cat_dom,tigrfam_PsdUridine_synth_TruA	-	no_errors	PUS3	HGNC	ENSG00000110060				180	1	0.552486	144	9	5.88235
HYLS1	0	genome.wustl.edu	37	11	125769525	125769525	+	Silent	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	125769525	125769525	A	C	SNP	HYLS1	ENST00000356438	human	ensembl	74_37	+1	known	silent	c.262	p.R88	0.174	NULL	NULL	-	no_errors	HYLS1	HGNC	ENSG00000198331				83	0	0	58	5	7.93651
FOXRED1	0	genome.wustl.edu	37	11	126146977	126146977	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	126146977	126146977	G	A	SNP	FOXRED1	ENST00000263578	human	ensembl	74_37	+1	known	silent	c.1113	p.P371	0.234	pfam_FAD-dep_OxRdtase	pfam_FAD-dep_OxRdtase	-	no_errors	FOXRED1	HGNC	ENSG00000110074				49	0	0	51	9	15
MUC5B	0	genome.wustl.edu	37	11	1264269	1264269	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	1264269	1264269	T	C	SNP	MUC5B	ENST00000447027	human	ensembl	74_37	+1	known	silent	c.6168	p.T2056	0.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983				70	0	0	83	6	6.74157
MUC5B	0	genome.wustl.edu	37	11	1265019	1265019	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	1265019	1265019	G	A	SNP	MUC5B	ENST00000447027	human	ensembl	74_37	+1	known	silent	c.6918	p.S2306	0.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983				71	0	0	58	19	24.6753
MUC5B	0	genome.wustl.edu	37	11	1265858	1265858	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	1265858	1265858	C	T	SNP	MUC5B	ENST00000447027	human	ensembl	74_37	+1	known	missense	c.7757	p.T2586M	0.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983				129	0	0	106	27	20.3008
KCNJ5	0	genome.wustl.edu	37	11	128786318	128786318	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	128786318	128786318	G	T	SNP	KCNJ5	ENST00000529694	human	ensembl	74_37	+1	known	missense	c.952	p.A318S	1.000	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir3.4	-	no_errors	KCNJ5	HGNC	ENSG00000120457				77	0	0	69	6	8
ARHGAP32	0	genome.wustl.edu	37	11	128840677	128840677	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	128840677	128840677	T	C	SNP	ARHGAP32	ENST00000310343	human	ensembl	74_37	-1	known	silent	c.4389	p.Q1463	0.004	NULL	pfam_RhoGAP_dom,pfam_SH3_domain,pfam_SH3_2,pfam_Phox,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Phox,smart_SH3_domain,smart_RhoGAP_dom,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	ARHGAP32	HGNC	ENSG00000134909				60	0	0	68	9	11.6883
NFRKB	0	genome.wustl.edu	37	11	129739944	129739944	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	129739944	129739944	C	T	SNP	NFRKB	ENST00000524794	human	ensembl	74_37	-1	known	silent	c.3051	p.Q1017	1.000	NULL	NULL	-	no_errors	NFRKB	HGNC	ENSG00000170322				128	0	0	122	11	8.27068
NFRKB	0	genome.wustl.edu	37	11	129739947	129739947	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	129739947	129739947	G	A	SNP	NFRKB	ENST00000524794	human	ensembl	74_37	-1	known	silent	c.3048	p.T1016	0.812	NULL	NULL	-	no_errors	NFRKB	HGNC	ENSG00000170322				124	0	0	121	12	9.02256
ADAMTS8	0	genome.wustl.edu	37	11	130275557	130275557	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	130275557	130275557	T	A	SNP	ADAMTS8	ENST00000257359	human	ensembl	74_37	-1	known	missense	c.2566	p.T856S	0.980	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Pept_M12B_ADAM-TS8,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS8	HGNC	ENSG00000134917				67	0	0	67	5	6.94444
OPCML	0	genome.wustl.edu	37	11	132812874	132812874	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	132812874	132812874	G	A	SNP	OPCML	ENST00000541867	human	ensembl	74_37	-1	known	silent	c.114	p.F38	1.000	pfam_Ig_I-set	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	OPCML	HGNC	ENSG00000183715				49	0	0	69	8	10.3896
IGSF9B	0	genome.wustl.edu	37	11	133790109	133790109	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	133790109	133790109	A	G	SNP	IGSF9B	ENST00000321016	human	ensembl	74_37	-1	known	missense	c.3511	p.Y1171H	1.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	IGSF9B	HGNC	ENSG00000080854				64	0	0	54	5	8.47458
ARNTL	0	genome.wustl.edu	37	11	13388247	13388247	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	13388247	13388247	G	A	SNP	ARNTL	ENST00000403290	human	ensembl	74_37	+1	known	silent	c.588	p.L196	0.998	pfam_PAS_fold,pfam_PAS_fold_3,superfamily_PAS,smart_PAS,prints_Nuc_translocat,pfscan_PAS	pfam_PAS_fold,pfam_PAS_fold_3,pfam_bHLH_dom,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,smart_PAC,prints_Nuc_translocat,pfscan_PAS,pfscan_bHLH_dom,tigrfam_PAS	-	no_errors	ARNTL	HGNC	ENSG00000133794				191	0	0	123	41	25
ACAD8	0	genome.wustl.edu	37	11	134130982	134130982	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	134130982	134130982	C	A	SNP	ACAD8	ENST00000281182	human	ensembl	74_37	+1	known	missense	c.750	p.D250E	1.000	superfamily_AcylCoA_DH/oxidase_NM_dom	pfam_AcylCo_DH/oxidase_C,pfam_AcylCoA_DH/ox_N,pfam_Acyl-CoA_DH_2_C,pfam_Acyl-CoA_Oxase/DH_cen-dom,superfamily_AcylCoA_DH/oxidase_NM_dom,superfamily_AcylCo_DH/oxidase_C	-	no_errors	ACAD8	HGNC	ENSG00000151498				24	0	0	19	2	9.52381
FAR1	0	genome.wustl.edu	37	11	13729544	13729544	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	13729544	13729544	T	C	SNP	FAR1	ENST00000354817	human	ensembl	74_37	+1	known	missense	c.463	p.Y155H	1.000	pfam_Male_sterile_NAD-bd,pfam_Epimerase_deHydtase	pfam_Male_sterile_NAD-bd,pfam_FAR,pfam_Epimerase_deHydtase	-	no_errors	FAR1	HGNC	ENSG00000197601				113	0	0	88	6	6.38298
COPB1	0	genome.wustl.edu	37	11	14502603	14502603	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	14502603	14502603	T	C	SNP	COPB1	ENST00000249923	human	ensembl	74_37	-1	known	missense	c.998	p.D333G	1.000	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_COPB1	pfam_Coatomer_bsu_C,pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_COPB1	-	no_errors	COPB1	HGNC	ENSG00000129083				182	0	0	138	13	8.60927
COPB1	0	genome.wustl.edu	37	11	14508019	14508019	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	14508019	14508019	C	T	SNP	COPB1	ENST00000249923	human	ensembl	74_37	-1	known	missense	c.731	p.R244H	1.000	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_COPB1	pfam_Coatomer_bsu_C,pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_COPB1	-	no_errors	COPB1	HGNC	ENSG00000129083				135	0	0	96	8	7.69231
PSMA1	0	genome.wustl.edu	37	11	14539484	14539484	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	14539484	14539484	T	C	SNP	PSMA1	ENST00000418988	human	ensembl	74_37	-1	known	missense	c.110	p.Q37R	1.000	pfam_Proteasome_sua/b	pfam_Proteasome_sua/b,pfam_Proteasome_asu_N,smart_Proteasome_asu_N	-	no_errors	PSMA1	HGNC	ENSG00000129084				76	0	0	51	3	5.55556
PDE3B	0	genome.wustl.edu	37	11	14808106	14808106	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	14808106	14808106	A	G	SNP	PDE3B	ENST00000282096	human	ensembl	74_37	+1	known	missense	c.1153	p.S385G	1.000	NULL	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom	-	no_errors	PDE3B	HGNC	ENSG00000152270				243	0	0	219	20	8.3682
PDE3B	0	genome.wustl.edu	37	11	14856574	14856574	+	Nonsense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	14856574	14856574	T	A	SNP	PDE3B	ENST00000282096	human	ensembl	74_37	+1	known	nonsense	c.2253	p.Y751*	1.000	smart_HD/PDEase_dom	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom	-	no_errors	PDE3B	HGNC	ENSG00000152270				109	0	0	75	7	8.53659
SOX6	0	genome.wustl.edu	37	11	15994527	15994527	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	15994527	15994527	C	A	SNP	SOX6	ENST00000352083	human	ensembl	74_37	-1	known	missense	c.2315	p.S772I	1.000	NULL	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	SOX6	HGNC	ENSG00000110693				122	0	0	131	7	5.07246
SOX6	0	genome.wustl.edu	37	11	16068172	16068172	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	16068172	16068172	C	T	SNP	SOX6	ENST00000352083	human	ensembl	74_37	-1	known	missense	c.1511	p.R504Q	1.000	NULL	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	SOX6	HGNC	ENSG00000110693				87	0	0	102	6	5.55556
PIK3C2A	0	genome.wustl.edu	37	11	17141478	17141478	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	17141478	17141478	A	G	SNP	PIK3C2A	ENST00000265970	human	ensembl	74_37	-1	known	missense	c.2701	p.Y901H	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_PI3K_Ras-bd_dom,pfam_Phox,pfam_C2_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,superfamily_Phox,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,smart_Phox,pfscan_C2_dom,pfscan_Phox,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3C2A	HGNC	ENSG00000011405				97	0	0	61	5	7.57576
PIK3C2A	0	genome.wustl.edu	37	11	17156512	17156512	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	17156512	17156512	A	C	SNP	PIK3C2A	ENST00000265970	human	ensembl	74_37	-1	known	missense	c.1962	p.D654E	1.000	NULL	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_PI3K_Ras-bd_dom,pfam_Phox,pfam_C2_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,superfamily_Phox,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,smart_Phox,pfscan_C2_dom,pfscan_Phox,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3C2A	HGNC	ENSG00000011405				190	0	0	151	12	7.36196
ABCC8	0	genome.wustl.edu	37	11	17452414	17452414	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	17452414	17452414	T	C	SNP	ABCC8	ENST00000302539	human	ensembl	74_37	-1	known	silent	c.1764	p.T588	0.051	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC1_TM_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,prints_Sulphorea_rcpt,prints_Surea_rcpt-1,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCC8	HGNC	ENSG00000006071				118	0	0	112	10	8.19672
MYOD1	0	genome.wustl.edu	37	11	17741356	17741356	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	17741356	17741356	C	T	SNP	MYOD1	ENST00000250003	human	ensembl	74_37	+1	known	silent	c.27	p.R9	0.997	smart_Basic	pfam_Basic,pfam_Myf5,pfam_bHLH_dom,superfamily_bHLH_dom,smart_Basic,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	MYOD1	HGNC	ENSG00000129152				75	0	0	66	17	20.4819
KCNC1	0	genome.wustl.edu	37	11	17757940	17757940	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	17757940	17757940	G	A	SNP	KCNC1	ENST00000265969	human	ensembl	74_37	+1	known	missense	c.391	p.A131T	1.000	NULL	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv3.1,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9	-	no_errors	KCNC1	HGNC	ENSG00000129159				20	0	0	9	6	40
KCNC1	0	genome.wustl.edu	37	11	17793578	17793578	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	17793578	17793578	G	A	SNP	KCNC1	ENST00000265969	human	ensembl	74_37	+1	known	missense	c.937	p.V313I	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv3.1,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9	-	no_errors	KCNC1	HGNC	ENSG00000129159				36	0	0	32	5	13.5135
IGSF22	0	genome.wustl.edu	37	11	18743101	18743101	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	18743101	18743101	T	C	SNP	IGSF22	ENST00000513874	human	ensembl	74_37	-1	known	missense	c.359	p.N120S	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	IGSF22	HGNC	ENSG00000179057				163	0	0	132	10	7.04225
E2F8	0	genome.wustl.edu	37	11	19259413	19259413	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	19259413	19259413	T	G	SNP	E2F8	ENST00000250024	human	ensembl	74_37	-1	known	missense	c.282	p.K94N	1.000	NULL	pfam_E2F_TDP	-	no_errors	E2F8	HGNC	ENSG00000129173				214	0	0	199	21	9.54545
E2F8	0	genome.wustl.edu	37	11	19261660	19261660	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	19261660	19261660	G	A	SNP	E2F8	ENST00000250024	human	ensembl	74_37	-1	known	silent	c.9	p.N3	0.807	NULL	pfam_E2F_TDP	-	no_errors	E2F8	HGNC	ENSG00000129173				114	1	0.869565	78	5	6.0241
NAV2	0	genome.wustl.edu	37	11	20070671	20070671	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	20070671	20070671	G	A	SNP	NAV2	ENST00000396087	human	ensembl	74_37	+1	known	missense	c.4369	p.A1457T	0.254	NULL	pfam_CH-domain,superfamily_CH-domain,superfamily_P-loop_NTPase,smart_CH-domain,smart_AAA+_ATPase,pfscan_CH-domain	-	no_errors	NAV2	HGNC	ENSG00000166833				177	0	0	129	7	5.14706
NAV2	0	genome.wustl.edu	37	11	20122624	20122624	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	20122624	20122624	C	G	SNP	NAV2	ENST00000396087	human	ensembl	74_37	+1	known	missense	c.6500	p.A2167G	1.000	superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_CH-domain,superfamily_CH-domain,superfamily_P-loop_NTPase,smart_CH-domain,smart_AAA+_ATPase,pfscan_CH-domain	-	no_errors	NAV2	HGNC	ENSG00000166833				116	0	0	112	14	11.1111
SLC6A5	0	genome.wustl.edu	37	11	20668428	20668428	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	20668428	20668428	C	A	SNP	SLC6A5	ENST00000525748	human	ensembl	74_37	+1	known	missense	c.2018	p.P673H	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	-	no_errors	SLC6A5	HGNC	ENSG00000165970				93	0	0	74	5	6.32911
IGF2	0	genome.wustl.edu	37	11	2154747	2154747	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	2154747	2154747	C	T	SNP	IGF2	ENST00000434045	human	ensembl	74_37	-1	known	silent	c.474	p.P158	1.000	NULL	pfam_IGF2_C,pfam_Insulin-like,superfamily_Insulin-like,smart_Insulin-like,prints_IGF2,prints_Insulin_family,prints_Insulin-like_growth_factor	-	no_errors	IGF2	HGNC	ENSG00000167244				23	0	0	28	6	17.6471
TH	0	genome.wustl.edu	37	11	2186545	2186545	+	Silent	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	2186545	2186545	C	A	SNP	TH	ENST00000381178	human	ensembl	74_37	-1	known	silent	c.1344	p.A448	0.294	pfam_Aromatic-AA_hydroxylase_C,superfamily_Aromatic-AA_hydroxylase_C,pirsf_Tyrosine_3-monooxygenase-like,tigrfam_Tyr_3_mOase	pfam_Aromatic-AA_hydroxylase_C,pfam_Tyrosine_hydroxylase_CS,superfamily_Aromatic-AA_hydroxylase_C,pirsf_Tyrosine_3-monooxygenase-like,prints_Aromatic-AA_hydroxylase_C,tigrfam_Tyr_3_mOase	-	no_errors	TH	HGNC	ENSG00000180176				97	0	0	104	8	7.14286
TH	0	genome.wustl.edu	37	11	2189370	2189370	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	2189370	2189370	C	T	SNP	TH	ENST00000381178	human	ensembl	74_37	-1	known	missense	c.620	p.C207Y	1.000	pfam_Aromatic-AA_hydroxylase_C,superfamily_Aromatic-AA_hydroxylase_C,pirsf_Tyrosine_3-monooxygenase-like,tigrfam_Tyr_3_mOase	pfam_Aromatic-AA_hydroxylase_C,pfam_Tyrosine_hydroxylase_CS,superfamily_Aromatic-AA_hydroxylase_C,pirsf_Tyrosine_3-monooxygenase-like,prints_Aromatic-AA_hydroxylase_C,tigrfam_Tyr_3_mOase	-	no_errors	TH	HGNC	ENSG00000180176				91	0	0	74	5	6.32911
SLC17A6	0	genome.wustl.edu	37	11	22363222	22363222	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	22363222	22363222	C	A	SNP	SLC17A6	ENST00000263160	human	ensembl	74_37	+1	known	missense	c.235	p.L79M	1.000	superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC17A6	HGNC	ENSG00000091664				46	0	0	46	4	8
SVIP	0	genome.wustl.edu	37	11	22844655	22844655	+	RNA	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	22844655	22844655	A	G	SNP	SVIP	ENST00000530199	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SVIP	HGNC	ENSG00000198168				51	0	0	24	4	14.2857
SLC5A12	0	genome.wustl.edu	37	11	26714070	26714070	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	26714070	26714070	G	A	SNP	SLC5A12	ENST00000396005	human	ensembl	74_37	-1	known	silent	c.1119	p.S373	0.184	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A12	HGNC	ENSG00000148942				78	0	0	58	10	14.7059
BBOX1	0	genome.wustl.edu	37	11	27148839	27148839	+	Splice_Site	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	27148839	27148839	G	T	SNP	BBOX1	ENST00000263182	human	ensembl	74_37	+1	known	splice_site	c.1004-1	e7-1	1.000	-	-	-	no_errors	BBOX1	HGNC	ENSG00000129151				63	0	0	56	8	12.5
LGR4	0	genome.wustl.edu	37	11	27395180	27395180	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	27395180	27395180	G	T	SNP	LGR4	ENST00000379214	human	ensembl	74_37	-1	known	missense	c.1297	p.L433M	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_GPCR_Rhodpsn,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,pfscan_GPCR_Rhodpsn_7TM,prints_Gphrmn_rcpt_fam,prints_GPCR_Rhodpsn	-	no_errors	LGR4	HGNC	ENSG00000205213				110	0	0	86	11	11.3402
ATHL1	0	genome.wustl.edu	37	11	293611	293611	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	293611	293611	G	A	SNP	ATHL1	ENST00000409548	human	ensembl	74_37	+1	known	missense	c.1498	p.A500T	1.000	pfam_Glyco_hydro_65_M,superfamily_6-hairpin_glycosidase-like	pfam_Glyco_hydro_65_M,superfamily_6-hairpin_glycosidase-like	-	no_errors	ATHL1	HGNC	ENSG00000142102				52	0	0	67	4	5.6338
CARS	0	genome.wustl.edu	37	11	3048007	3048007	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	3048007	3048007	A	G	SNP	CARS	ENST00000380525	human	ensembl	74_37	-1	known	missense	c.1052	p.V351A	1.000	pfam_Cys-tRNA/MSH_ligase,tigrfam_Cys-tRNA-ligase	pfam_Cys-tRNA/MSH_ligase,pfam_Methionyl/Leucyl_tRNA_Synth,superfamily_tRNAsynth_1a_anticodon-bd,superfamily_Glutathione-S-Trfase_C-like,prints_Cys-tRNA/MSH_ligase,tigrfam_Cys-tRNA-ligase	-	no_errors	CARS	HGNC	ENSG00000110619				119	0	0	112	11	8.94309
DCDC1	0	genome.wustl.edu	37	11	30937073	30937073	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	30937073	30937073	T	A	SNP	DCDC1	ENST00000339794	human	ensembl	74_37	-1	known	missense	c.875	p.H292L	0.938	pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,pfscan_Ricin_B_lectin	pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,pfscan_Doublecortin_dom,pfscan_Ricin_B_lectin	-	no_errors	DCDC1	HGNC	ENSG00000170959				96	0	0	105	8	7.07965
OSBPL5	0	genome.wustl.edu	37	11	3141815	3141815	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	3141815	3141815	C	T	SNP	OSBPL5	ENST00000263650	human	ensembl	74_37	-1	known	missense	c.442	p.V148M	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL5	HGNC	ENSG00000021762				56	0	0	54	15	21.7391
IFITM1	0	genome.wustl.edu	37	11	314932	314932	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	314932	314932	G	A	SNP	IFITM1	ENST00000328221	human	ensembl	74_37	+1	known	missense	c.197	p.R66K	1.000	pfam_CD225/Dispanin_fam	pfam_CD225/Dispanin_fam	-	no_errors	IFITM1	HGNC	ENSG00000185885				37	0	0	50	6	10.7143
WT1-AS	0	genome.wustl.edu	37	11	32460534	32460534	+	RNA	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	32460534	32460534	C	A	SNP	WT1-AS	ENST00000395900	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	WT1-AS	HGNC	ENSG00000183242				74	0	0	53	16	23.1884
MRGPRE	0	genome.wustl.edu	37	11	3249355	3249355	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	3249355	3249355	G	A	SNP	MRGPRE	ENST00000389832	human	ensembl	74_37	-1	known	silent	c.675	p.L225	0.007	pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	MRGPRE	HGNC	ENSG00000184350				11	0	0	8	3	27.2727
EIF3M	0	genome.wustl.edu	37	11	32610169	32610169	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	32610169	32610169	T	A	SNP	EIF3M	ENST00000531120	human	ensembl	74_37	+1	known	missense	c.205	p.S69T	0.993	superfamily_ARM-type_fold	pfam_PCI_dom,superfamily_ARM-type_fold,smart_PCI_dom	-	no_errors	EIF3M	HGNC	ENSG00000149100				138	0	0	112	12	9.67742
QSER1	0	genome.wustl.edu	37	11	32954606	32954606	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	32954606	32954606	C	A	SNP	QSER1	ENST00000399302	human	ensembl	74_37	+1	known	missense	c.1415	p.S472Y	1.000	NULL	NULL	-	no_errors	QSER1	HGNC	ENSG00000060749				99	0	0	95	9	8.65385
KIAA1549L	0	genome.wustl.edu	37	11	33566723	33566723	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	33566723	33566723	A	G	SNP	KIAA1549L	ENST00000389726	human	ensembl	74_37	+1	known	missense	c.2311	p.R771G	0.902	NULL	NULL	-	no_errors	KIAA1549L	HGNC	ENSG00000110427				94	0	0	102	7	6.42202
KIAA1549L	0	genome.wustl.edu	37	11	33628237	33628237	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	33628237	33628237	A	G	SNP	KIAA1549L	ENST00000389726	human	ensembl	74_37	+1	known	missense	c.4057	p.K1353E	1.000	NULL	NULL	-	no_errors	KIAA1549L	HGNC	ENSG00000110427				54	0	0	42	3	6.66667
NAT10	0	genome.wustl.edu	37	11	34144031	34144031	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	34144031	34144031	A	T	SNP	NAT10	ENST00000257829	human	ensembl	74_37	+1	known	missense	c.806	p.E269V	1.000	superfamily_P-loop_NTPase	pfam_Helicase_dom,pfam_DUF1726,superfamily_Acyl_CoA_acyltransferase,superfamily_P-loop_NTPase,pfscan_GNAT_dom	-	no_errors	NAT10	HGNC	ENSG00000135372				111	0	0	107	11	9.32203
CAT	0	genome.wustl.edu	37	11	34472556	34472556	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	34472556	34472556	T	A	SNP	CAT	ENST00000241052	human	ensembl	74_37	+1	known	missense	c.260	p.V87D	1.000	pfam_Catalase_core,superfamily_Catalase-like_dom	pfam_Catalase_core,pfam_Catalase_immune_responsive,superfamily_Catalase-like_dom,prints_Catalase	-	no_errors	CAT	HGNC	ENSG00000121691				257	1	0.387597	232	17	6.82731
APIP	0	genome.wustl.edu	37	11	34905014	34905014	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	34905014	34905014	T	C	SNP	APIP	ENST00000278359	human	ensembl	74_37	-1	known	missense	c.550	p.T184A	1.000	pfam_Aldolase_II/adducin_N,superfamily_Aldolase_II/adducin_N,tigrfam_MethylthioRu-1-P_deHdtase_MtnB	pfam_Aldolase_II/adducin_N,superfamily_Aldolase_II/adducin_N,tigrfam_MethylthioRu-1-P_deHdtase_MtnB	-	no_errors	APIP	HGNC	ENSG00000149089				122	0	0	73	23	23.9583
PAMR1	0	genome.wustl.edu	37	11	35456166	35456166	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	35456166	35456166	G	A	SNP	PAMR1	ENST00000278360	human	ensembl	74_37	-1	known	missense	c.1571	p.T524I	1.000	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,pfam_CUB_dom,pfam_Sushi_SCR_CCP,pfam_EG-like_dom,superfamily_Trypsin-like_Pept_dom,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_EG-like_dom,smart_CUB_dom,smart_EGF-like_Ca-bd_dom,smart_Sushi_SCR_CCP,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_CUB_dom,pfscan_EG-like_dom,pfscan_Sushi_SCR_CCP,pfscan_Peptidase_S1	-	no_errors	PAMR1	HGNC	ENSG00000149090				98	0	0	73	6	7.59494
PAMR1	0	genome.wustl.edu	37	11	35513631	35513631	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	35513631	35513631	G	A	SNP	PAMR1	ENST00000278360	human	ensembl	74_37	-1	known	missense	c.341	p.A114V	0.993	smart_EG-like_dom	pfam_Peptidase_S1,pfam_CUB_dom,pfam_Sushi_SCR_CCP,pfam_EG-like_dom,superfamily_Trypsin-like_Pept_dom,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_EG-like_dom,smart_CUB_dom,smart_EGF-like_Ca-bd_dom,smart_Sushi_SCR_CCP,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_CUB_dom,pfscan_EG-like_dom,pfscan_Sushi_SCR_CCP,pfscan_Peptidase_S1	-	no_errors	PAMR1	HGNC	ENSG00000149090				198	0	0	172	22	11.3402
TRIM44	0	genome.wustl.edu	37	11	35747662	35747662	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	35747662	35747662	C	T	SNP	TRIM44	ENST00000299413	human	ensembl	74_37	+1	known	missense	c.938	p.A313V	1.000	NULL	pfam_Znf_B-box,smart_Znf_B-box,pfscan_Znf_B-box	-	no_errors	TRIM44	HGNC	ENSG00000166326				56	0	0	51	6	10.5263
TRAF6	0	genome.wustl.edu	37	11	36516539	36516539	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	36516539	36516539	A	G	SNP	TRAF6	ENST00000348124	human	ensembl	74_37	-1	known	missense	c.665	p.L222P	1.000	superfamily_TRAF-like,pirsf_TNF_rcpt--assoc_TRAF,pfscan_Znf_TRAF	pfam_MATH,pfam_Znf_C3HC4_RING-type,superfamily_TRAF-like,smart_Znf_RING,smart_MATH,pirsf_TNF_rcpt--assoc_TRAF,pfscan_MATH,pfscan_Znf_RING,pfscan_Znf_TRAF	-	no_errors	TRAF6	HGNC	ENSG00000175104				152	0	0	81	6	6.89655
RAG1	0	genome.wustl.edu	37	11	36597940	36597940	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	36597940	36597940	T	C	SNP	RAG1	ENST00000299440	human	ensembl	74_37	+1	known	missense	c.3086	p.L1029S	0.000	NULL	pfam_Znf_VDJ_recomb-activ_1,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RAG1	HGNC	ENSG00000166349				99	0	0	66	5	7.04225
NUP98	0	genome.wustl.edu	37	11	3700923	3700923	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	3700923	3700923	T	C	SNP	NUP98	ENST00000324932	human	ensembl	74_37	-1	known	missense	c.4934	p.E1645G	1.000	NULL	pfam_Nup96,pfam_Peptidase_S59,superfamily_Peptidase_S59	-	no_errors	NUP98	HGNC	ENSG00000110713				66	0	0	39	7	15.2174
STIM1	0	genome.wustl.edu	37	11	4112932	4112932	+	Silent	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	4112932	4112932	T	A	SNP	STIM1	ENST00000300737	human	ensembl	74_37	+1	known	silent	c.1962	p.A654	1.000	NULL	pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	STIM1	HGNC	ENSG00000167323				64	0	0	60	7	10.4478
RRM1	0	genome.wustl.edu	37	11	4139675	4139675	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	4139675	4139675	G	A	SNP	RRM1	ENST00000300738	human	ensembl	74_37	+1	known	missense	c.776	p.G259D	1.000	pfam_RNR_lg_C,tigrfam_NrdE_NrdA	pfam_RNR_lg_C,pfam_RNR_lsu_N,pfam_ATP-cone,superfamily_RNR_R1-su_N,pfscan_ATP-cone,prints_RNR_lg_C,tigrfam_NrdE_NrdA	-	no_errors	RRM1	HGNC	ENSG00000167325				143	0	0	127	17	11.8056
TTC17	0	genome.wustl.edu	37	11	43413401	43413401	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	43413401	43413401	C	T	SNP	TTC17	ENST00000039989	human	ensembl	74_37	+1	known	missense	c.562	p.P188S	1.000	NULL	pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC17	HGNC	ENSG00000052841				156	0	0	105	13	11.0169
TRIM21	0	genome.wustl.edu	37	11	4409705	4409705	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	4409705	4409705	T	C	SNP	TRIM21	ENST00000254436	human	ensembl	74_37	-1	known	missense	c.560	p.N187S	0.836	NULL	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Ubox_domain,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin,prints_Znf_B-box_chordata	-	no_errors	TRIM21	HGNC	ENSG00000132109				414	0	0	328	27	7.60563
ACCS	0	genome.wustl.edu	37	11	44104792	44104792	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	44104792	44104792	G	T	SNP	ACCS	ENST00000263776	human	ensembl	74_37	+1	known	missense	c.1185	p.E395D	1.000	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase	-	no_errors	ACCS	HGNC	ENSG00000110455				119	0	0	109	12	9.91736
TRIM21	0	genome.wustl.edu	37	11	4410964	4410964	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	4410964	4410964	C	T	SNP	TRIM21	ENST00000254436	human	ensembl	74_37	-1	known	missense	c.424	p.A142T	0.146	NULL	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Ubox_domain,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin,prints_Znf_B-box_chordata	-	no_errors	TRIM21	HGNC	ENSG00000132109				164	0	0	135	36	21.0526
EXT2	0	genome.wustl.edu	37	11	44129625	44129625	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	44129625	44129625	T	C	SNP	EXT2	ENST00000395673	human	ensembl	74_37	+1	known	silent	c.462	p.S154	0.778	pfam_Exostosin	pfam_HexNAc_Trfase_a,pfam_Exostosin	-	no_errors	EXT2	HGNC	ENSG00000151348				88	0	0	73	4	5.19481
OR52K1	0	genome.wustl.edu	37	11	4511027	4511027	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	4511027	4511027	G	A	SNP	OR52K1	ENST00000307632	human	ensembl	74_37	+1	known	silent	c.897	p.K299	0.986	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR52K1	HGNC	ENSG00000196778				144	0	0	139	9	6.08108
PRDM11	0	genome.wustl.edu	37	11	45246062	45246062	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	45246062	45246062	C	T	SNP	PRDM11	ENST00000263765	human	ensembl	74_37	+1	known	missense	c.1139	p.A380V	0.005	NULL	pfscan_SET_dom	-	no_errors	PRDM11	HGNC	ENSG00000019485				132	0	0	123	11	8.20896
CHST1	0	genome.wustl.edu	37	11	45671505	45671505	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	45671505	45671505	C	T	SNP	CHST1	ENST00000308064	human	ensembl	74_37	-1	known	silent	c.969	p.P323	0.663	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,pirsf_Carbohydrate_sulfotransferase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,pirsf_Carbohydrate_sulfotransferase	-	no_errors	CHST1	HGNC	ENSG00000175264				76	0	0	91	6	6.18557
OR52I1	0	genome.wustl.edu	37	11	4615383	4615383	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	4615383	4615383	T	C	SNP	OR52I1	ENST00000530443	human	ensembl	74_37	+1	known	missense	c.115	p.Y39H	0.998	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR52I1	HGNC	ENSG00000232268				148	0	0	113	7	5.83333
OR52I1	0	genome.wustl.edu	37	11	4615865	4615865	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	4615865	4615865	C	A	SNP	OR52I1	ENST00000530443	human	ensembl	74_37	+1	known	missense	c.597	p.S199R	0.997	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR52I1	HGNC	ENSG00000232268				240	0	0	192	12	5.88235
TRIM68	0	genome.wustl.edu	37	11	4621846	4621846	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	4621846	4621846	C	A	SNP	TRIM68	ENST00000300747	human	ensembl	74_37	-1	known	missense	c.1118	p.G373V	1.000	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM68	HGNC	ENSG00000167333				38	0	0	23	10	30.303
AMBRA1	0	genome.wustl.edu	37	11	46419420	46419420	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	46419420	46419420	G	A	SNP	AMBRA1	ENST00000458649	human	ensembl	74_37	-1	known	silent	c.3477	p.G1159	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	AMBRA1	HGNC	ENSG00000110497				38	0	0	26	8	23.5294
MADD	0	genome.wustl.edu	37	11	47296132	47296132	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	47296132	47296132	C	T	SNP	MADD	ENST00000311027	human	ensembl	74_37	+1	known	silent	c.81	p.S27	0.831	pfam_uDENN_dom,smart_uDENN_dom,pfscan_uDENN_dom	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	MADD	HGNC	ENSG00000110514				198	0	0	178	18	9.18367
MYBPC3	0	genome.wustl.edu	37	11	47371349	47371349	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	47371349	47371349	G	A	SNP	MYBPC3	ENST00000399249	human	ensembl	74_37	-1	known	silent	c.630	p.H210	0.439	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	MYBPC3	HGNC	ENSG00000134571				15	0	0	19	5	20.8333
PSMC3	0	genome.wustl.edu	37	11	47444219	47444219	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	47444219	47444219	C	A	SNP	PSMC3	ENST00000298852	human	ensembl	74_37	-1	known	missense	c.790	p.G264C	1.000	pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_P-loop_NTPase,smart_AAA+_ATPase,tigrfam_26S_Psome_P45	pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_P-loop_NTPase,smart_AAA+_ATPase,tigrfam_26S_Psome_P45	-	no_errors	PSMC3	HGNC	ENSG00000165916				106	1	0.934579	78	21	21.2121
RAPSN	0	genome.wustl.edu	37	11	47464237	47464237	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	47464237	47464237	G	A	SNP	RAPSN	ENST00000298854	human	ensembl	74_37	-1	known	missense	c.661	p.R221C	1.000	smart_TPR_repeat,pfscan_TPR-contain_dom	pfam_Rapsyn_myristoylation/link_N,smart_TPR_repeat,smart_Znf_RING,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Znf_RING,prints_Postsynaptic	-	no_errors	RAPSN	HGNC	ENSG00000165917				44	0	0	32	7	17.9487
CELF1	0	genome.wustl.edu	37	11	47504275	47504275	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	47504275	47504275	A	C	SNP	CELF1	ENST00000532048	human	ensembl	74_37	-1	known	missense	c.737	p.L246R	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CELF1	HGNC	ENSG00000149187				100	0	0	72	7	8.86076
MTCH2	0	genome.wustl.edu	37	11	47648651	47648651	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	47648651	47648651	T	C	SNP	MTCH2	ENST00000302503	human	ensembl	74_37	-1	known	missense	c.662	p.Y221C	1.000	superfamily_Mt_carrier_dom	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	MTCH2	HGNC	ENSG00000109919				72	0	0	39	3	7.14286
AGBL2	0	genome.wustl.edu	37	11	47736193	47736193	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	47736193	47736193	C	A	SNP	AGBL2	ENST00000357610	human	ensembl	74_37	-1	known	missense	c.10	p.A4S	0.798	NULL	pfam_Peptidase_M14	-	no_errors	AGBL2	HGNC	ENSG00000165923				238	0	0	216	15	6.49351
FNBP4	0	genome.wustl.edu	37	11	47744588	47744588	+	Silent	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	47744588	47744588	T	A	SNP	FNBP4	ENST00000263773	human	ensembl	74_37	-1	known	silent	c.2745	p.P915	0.813	NULL	pfam_WW_dom,superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom	-	no_errors	FNBP4	HGNC	ENSG00000109920				9	0	0	8	3	27.2727
FNBP4	0	genome.wustl.edu	37	11	47754182	47754182	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	47754182	47754182	T	C	SNP	FNBP4	ENST00000263773	human	ensembl	74_37	-1	known	missense	c.1727	p.N576S	1.000	NULL	pfam_WW_dom,superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom	-	no_errors	FNBP4	HGNC	ENSG00000109920				63	0	0	50	5	9.09091
FNBP4	0	genome.wustl.edu	37	11	47754208	47754208	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	47754208	47754208	G	A	SNP	FNBP4	ENST00000263773	human	ensembl	74_37	-1	known	silent	c.1701	p.D567	1.000	NULL	pfam_WW_dom,superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom	-	no_errors	FNBP4	HGNC	ENSG00000109920				54	0	0	35	7	16.6667
PTPRJ	0	genome.wustl.edu	37	11	48131619	48131619	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	48131619	48131619	G	A	SNP	PTPRJ	ENST00000418331	human	ensembl	74_37	+1	known	missense	c.106	p.A36T	0.194	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRJ	HGNC	ENSG00000149177				187	0	0	122	43	26.0606
PTPRJ	0	genome.wustl.edu	37	11	48166633	48166633	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	48166633	48166633	C	T	SNP	PTPRJ	ENST00000418331	human	ensembl	74_37	+1	known	silent	c.2868	p.S956	0.990	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRJ	HGNC	ENSG00000149177				136	0	0	131	12	8.39161
PTPRJ	0	genome.wustl.edu	37	11	48185166	48185166	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	48185166	48185166	T	C	SNP	PTPRJ	ENST00000418331	human	ensembl	74_37	+1	known	missense	c.3715	p.C1239R	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRJ	HGNC	ENSG00000149177				47	0	0	46	4	8
OR52R1	0	genome.wustl.edu	37	11	4825366	4825366	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	4825366	4825366	G	T	SNP	OR52R1	ENST00000380382	human	ensembl	74_37	-1	known	missense	c.482	p.P161H	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR52R1	HGNC	ENSG00000176937				89	0	0	58	20	25.641
OR4S1	0	genome.wustl.edu	37	11	48328111	48328111	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	48328111	48328111	C	T	SNP	OR4S1	ENST00000319988	human	ensembl	74_37	+1	known	missense	c.337	p.L113F	0.993	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4S1	HGNC	ENSG00000176555				86	0	0	80	10	11.1111
OR4C3	0	genome.wustl.edu	37	11	48346544	48346544	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	48346544	48346544	G	A	SNP	OR4C3	ENST00000319856	human	ensembl	74_37	+1	known	missense	c.52	p.A18T	0.000	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4C3	HGNC	ENSG00000176547				174	0	0	120	9	6.97674
OR51S1	0	genome.wustl.edu	37	11	4870066	4870066	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	4870066	4870066	C	T	SNP	OR51S1	ENST00000322101	human	ensembl	74_37	-1	known	missense	c.373	p.A125T	0.010	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR51S1	HGNC	ENSG00000176922				104	0	0	93	28	23.1405
OR51T1	0	genome.wustl.edu	37	11	4903898	4903898	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	4903898	4903898	C	A	SNP	OR51T1	ENST00000380378	human	ensembl	74_37	+1	known	missense	c.850	p.L284M	0.033	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR51T1	HGNC	ENSG00000176900				110	0	0	75	7	8.53659
FOLH1	0	genome.wustl.edu	37	11	49168405	49168405	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	49168405	49168405	A	G	SNP	FOLH1	ENST00000256999	human	ensembl	74_37	-1	known	missense	c.2156	p.V719A	0.103	pfam_TFR-like_dimer_dom,superfamily_TFR-like_dimer_dom	pfam_TFR-like_dimer_dom,pfam_Protease-assoc_domain,pfam_Peptidase_M28,superfamily_TFR-like_dimer_dom	-	no_errors	FOLH1	HGNC	ENSG00000086205				140	0	0	125	7	5.30303
OR51G1	0	genome.wustl.edu	37	11	4945098	4945098	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	4945098	4945098	T	C	SNP	OR51G1	ENST00000321961	human	ensembl	74_37	-1	known	missense	c.472	p.I158V	0.991	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR51G1	HGNC	ENSG00000176879				47	0	0	40	5	11.1111
OR51A2	0	genome.wustl.edu	37	11	4976522	4976522	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	4976522	4976522	A	T	SNP	OR51A2	ENST00000380371	human	ensembl	74_37	-1	known	missense	c.422	p.V141D	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR51A2	HGNC	ENSG00000205496				188	0	0	139	31	18.2353
OR4C13	0	genome.wustl.edu	37	11	49974337	49974337	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	49974337	49974337	T	C	SNP	OR4C13	ENST00000555099	human	ensembl	74_37	+1	known	silent	c.363	p.Y121	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4C13	HGNC	ENSG00000258817				127	1	0.78125	92	19	17.1171
MMP26	0	genome.wustl.edu	37	11	5009533	5009533	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	5009533	5009533	T	C	SNP	MMP26	ENST00000300762	human	ensembl	74_37	+1	known	missense	c.92	p.F31S	0.995	superfamily_Peptidoglycan-bd-like	pfam_Pept_M10_metallopeptidase,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,prints_Pept_M10A	-	no_errors	MMP26	HGNC	ENSG00000167346				149	1	0.666667	127	13	9.28571
MMP26	0	genome.wustl.edu	37	11	5013200	5013200	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	5013200	5013200	A	T	SNP	MMP26	ENST00000300762	human	ensembl	74_37	+1	known	missense	c.602	p.N201I	0.764	pfam_Pept_M10_metallopeptidase,smart_Peptidase_Metallo	pfam_Pept_M10_metallopeptidase,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,prints_Pept_M10A	-	no_errors	MMP26	HGNC	ENSG00000167346				45	0	0	47	7	12.963
OR51L1	0	genome.wustl.edu	37	11	5020602	5020602	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	5020602	5020602	T	C	SNP	OR51L1	ENST00000321543	human	ensembl	74_37	+1	known	silent	c.390	p.H130	0.056	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR51L1	HGNC	ENSG00000176798				209	0	0	184	12	6.12245
OR4A5	0	genome.wustl.edu	37	11	51412149	51412149	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	51412149	51412149	A	C	SNP	OR4A5	ENST00000319760	human	ensembl	74_37	-1	known	missense	c.247	p.L83V	0.027	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4A5	HGNC	ENSG00000221840				74	0	0	43	6	12.2449
OR4A5	0	genome.wustl.edu	37	11	51412388	51412388	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	51412388	51412388	T	C	SNP	OR4A5	ENST00000319760	human	ensembl	74_37	-1	known	missense	c.8	p.Q3R	0.269	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4A5	HGNC	ENSG00000221840				31	0	0	23	5	17.8571
OR52A4	0	genome.wustl.edu	37	11	5142602	5142602	+	RNA	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	5142602	5142602	C	T	SNP	OR52A4	ENST00000481634	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	OR52A4	HGNC	ENSG00000205494				85	0	0	46	14	23.3333
OR51V1	0	genome.wustl.edu	37	11	5221892	5221892	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	5221892	5221892	A	G	SNP	OR51V1	ENST00000321255	human	ensembl	74_37	-1	known	silent	c.39	p.P13	0.000	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR51V1	HGNC	ENSG00000176742				94	0	0	70	8	10.2564
OR51Q1	0	genome.wustl.edu	37	11	5444364	5444364	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	5444364	5444364	A	G	SNP	OR51Q1	ENST00000300778	human	ensembl	74_37	+1	known	missense	c.934	p.K312E	0.000	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR51Q1	HGNC	ENSG00000167360				35	0	0	31	5	13.8889
TRIM48	0	genome.wustl.edu	37	11	55035844	55035844	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	55035844	55035844	T	C	SNP	TRIM48	ENST00000417545	human	ensembl	74_37	+1	known	missense	c.574	p.Y192H	0.183	NULL	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM48	HGNC	ENSG00000150244				148	0	0	101	22	17.8862
OR52D1	0	genome.wustl.edu	37	11	5510093	5510093	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	5510093	5510093	G	T	SNP	OR52D1	ENST00000322641	human	ensembl	74_37	+1	known	missense	c.157	p.A53S	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR52D1	HGNC	ENSG00000181609				150	1	0.662252	97	24	19.8347
UBQLN3	0	genome.wustl.edu	37	11	5530154	5530154	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	5530154	5530154	T	C	SNP	UBQLN3	ENST00000311659	human	ensembl	74_37	-1	known	missense	c.635	p.N212S	1.000	superfamily_ARM-type_fold,smart_STI1_HS-bd	pfam_Ubiquitin_dom,pfam_Rad60/SUMO_like,pfam_UBA/Ts_N,superfamily_UBA-like,superfamily_ARM-type_fold,smart_Ubiquitin_dom,smart_STI1_HS-bd,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Ubiquitin_supergroup	-	no_errors	UBQLN3	HGNC	ENSG00000175520				143	0	0	113	9	7.37705
OR4C16	0	genome.wustl.edu	37	11	55339641	55339641	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	55339641	55339641	T	A	SNP	OR4C16	ENST00000314634	human	ensembl	74_37	+1	known	missense	c.38	p.L13H	0.007	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4C16	HGNC	ENSG00000181935				100	0	0	67	5	6.94444
OR4C6	0	genome.wustl.edu	37	11	55432731	55432731	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	55432731	55432731	T	G	SNP	OR4C6	ENST00000314259	human	ensembl	74_37	+1	known	missense	c.89	p.L30R	0.069	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4C6	HGNC	ENSG00000181903				179	0	0	144	10	6.49351
OR5D13	0	genome.wustl.edu	37	11	55541190	55541190	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	55541190	55541190	A	G	SNP	OR5D13	ENST00000361760	human	ensembl	74_37	+1	known	missense	c.277	p.T93A	0.041	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5D13	HGNC	ENSG00000198877				185	0	0	146	11	7.00637
OR5D14	0	genome.wustl.edu	37	11	55563075	55563075	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	55563075	55563075	C	T	SNP	OR5D14	ENST00000335605	human	ensembl	74_37	+1	known	missense	c.44	p.A15V	0.000	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5D14	HGNC	ENSG00000186113				155	0	0	124	12	8.82353
OR5D14	0	genome.wustl.edu	37	11	55563329	55563329	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	55563329	55563329	A	G	SNP	OR5D14	ENST00000335605	human	ensembl	74_37	+1	known	missense	c.298	p.M100V	0.641	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5D14	HGNC	ENSG00000186113				79	0	0	66	4	5.71429
OR5L1	0	genome.wustl.edu	37	11	55579700	55579700	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	55579700	55579700	G	T	SNP	OR5L1	ENST00000333973	human	ensembl	74_37	+1	known	missense	c.758	p.G253V	0.054	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5L1	HGNC	ENSG00000186117				121	0	0	85	6	6.59341
OR5L1	0	genome.wustl.edu	37	11	55579727	55579727	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	55579727	55579727	C	A	SNP	OR5L1	ENST00000333973	human	ensembl	74_37	+1	known	missense	c.785	p.P262H	0.597	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5L1	HGNC	ENSG00000186117				109	0	0	75	6	7.40741
OR5L1	0	genome.wustl.edu	37	11	55579836	55579836	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	55579836	55579836	A	T	SNP	OR5L1	ENST00000333973	human	ensembl	74_37	+1	known	missense	c.894	p.K298N	0.000	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5L1	HGNC	ENSG00000186117				54	0	0	43	5	10.4167
OR5D18	0	genome.wustl.edu	37	11	55587251	55587251	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	55587251	55587251	T	A	SNP	OR5D18	ENST00000333976	human	ensembl	74_37	+1	known	missense	c.146	p.I49N	0.007	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5D18	HGNC	ENSG00000186119				214	0	0	138	19	12.1019
OR5I1	0	genome.wustl.edu	37	11	55703185	55703185	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	55703185	55703185	C	T	SNP	OR5I1	ENST00000301532	human	ensembl	74_37	-1	known	missense	c.692	p.R231H	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5I1	HGNC	ENSG00000167825				28	0	0	10	3	23.0769
OR5I1	0	genome.wustl.edu	37	11	55703617	55703617	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	55703617	55703617	A	G	SNP	OR5I1	ENST00000301532	human	ensembl	74_37	-1	known	missense	c.260	p.F87S	0.028	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5I1	HGNC	ENSG00000167825				55	0	0	31	5	13.8889
OR5F1	0	genome.wustl.edu	37	11	55761391	55761391	+	Silent	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	55761391	55761391	A	C	SNP	OR5F1	ENST00000278409	human	ensembl	74_37	-1	known	silent	c.711	p.A237	0.133	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5F1	HGNC	ENSG00000149133				88	0	0	66	12	15.3846
OR5AS1	0	genome.wustl.edu	37	11	55798599	55798599	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	55798599	55798599	C	G	SNP	OR5AS1	ENST00000313555	human	ensembl	74_37	+1	known	missense	c.705	p.S235R	0.251	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5AS1	HGNC	ENSG00000181785				185	1	0.537634	143	17	10.625
OR8H3	0	genome.wustl.edu	37	11	55890557	55890557	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	55890557	55890557	G	A	SNP	OR8H3	ENST00000313472	human	ensembl	74_37	+1	known	missense	c.709	p.A237T	0.998	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8H3	HGNC	ENSG00000181761				122	0	0	89	8	8.24742
OR52B6	0	genome.wustl.edu	37	11	5602389	5602389	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	5602389	5602389	A	G	SNP	OR52B6	ENST00000345043	human	ensembl	74_37	+1	known	missense	c.283	p.T95A	0.583	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR52B6	HGNC	ENSG00000187747				154	1	0.645161	146	15	9.31677
OR52B6	0	genome.wustl.edu	37	11	5602413	5602413	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	5602413	5602413	G	A	SNP	OR52B6	ENST00000345043	human	ensembl	74_37	+1	known	missense	c.307	p.A103T	0.214	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR52B6	HGNC	ENSG00000187747				125	0	0	126	13	9.35252
OR8H1	0	genome.wustl.edu	37	11	56057653	56057653	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	56057653	56057653	C	T	SNP	OR8H1	ENST00000313022	human	ensembl	74_37	-1	known	missense	c.886	p.V296I	1.000	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8H1	HGNC	ENSG00000181693				208	0	0	137	16	10.4575
OR8K3	0	genome.wustl.edu	37	11	56085879	56085879	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	56085879	56085879	A	G	SNP	OR8K3	ENST00000312711	human	ensembl	74_37	+1	known	missense	c.97	p.M33V	0.561	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8K3	HGNC	ENSG00000181689				208	0	0	134	16	10.6667
OR5AP2	0	genome.wustl.edu	37	11	56409175	56409175	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	56409175	56409175	A	G	SNP	OR5AP2	ENST00000544374	human	ensembl	74_37	-1	known	silent	c.744	p.C248	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5AP2	HGNC	ENSG00000172464				127	0	0	94	26	21.6667
OR9G1	0	genome.wustl.edu	37	11	56467959	56467959	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	56467959	56467959	C	T	SNP	OR9G1	ENST00000312153	human	ensembl	74_37	+1	known	silent	c.96	p.G32	0.000	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR9G1	HGNC	ENSG00000174914				108	0	0	93	8	7.92079
OR9G4	0	genome.wustl.edu	37	11	56510828	56510828	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	56510828	56510828	C	T	SNP	OR9G4	ENST00000302957	human	ensembl	74_37	-1	known	missense	c.460	p.A154T	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR9G4	HGNC	ENSG00000172457				159	0	0	127	29	18.5897
LRRC55	0	genome.wustl.edu	37	11	56949930	56949930	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	56949930	56949930	G	A	SNP	LRRC55	ENST00000497933	human	ensembl	74_37	+1	known	missense	c.563	p.S188N	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	LRRC55	HGNC	ENSG00000183908				43	0	0	40	4	9.09091
LRRC55	0	genome.wustl.edu	37	11	56954725	56954725	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	56954725	56954725	A	G	SNP	LRRC55	ENST00000497933	human	ensembl	74_37	+1	known	missense	c.797	p.Q266R	1.000	smart_Cys-rich_flank_reg_C	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	LRRC55	HGNC	ENSG00000183908				99	0	0	82	5	5.74713
TRIM5	0	genome.wustl.edu	37	11	5700312	5700312	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	5700312	5700312	A	G	SNP	TRIM5	ENST00000305836	human	ensembl	74_37	-1	known	missense	c.505	p.S169P	0.003	NULL	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM5	HGNC	ENSG00000132256				142	0	0	118	14	10.6061
APLNR	0	genome.wustl.edu	37	11	57003818	57003818	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	57003818	57003818	A	G	SNP	APLNR	ENST00000257254	human	ensembl	74_37	-1	known	missense	c.661	p.Y221H	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_TAS2_rcpt,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_ATII_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_TAS2_rcpt,pfscan_GPCR_Rhodpsn_7TM,prints_APJ_rcpt,prints_GPCR_Rhodpsn,prints_ATII_rcpt	-	no_errors	APLNR	HGNC	ENSG00000134817				56	0	0	58	6	9.375
TNKS1BP1	0	genome.wustl.edu	37	11	57068388	57068388	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	57068388	57068388	G	A	SNP	TNKS1BP1	ENST00000358252	human	ensembl	74_37	-1	known	missense	c.5099	p.T1700M	0.001	NULL	NULL	-	no_errors	TNKS1BP1	HGNC	ENSG00000149115				131	0	0	134	10	6.94444
TNKS1BP1	0	genome.wustl.edu	37	11	57076651	57076651	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	57076651	57076651	A	G	SNP	TNKS1BP1	ENST00000358252	human	ensembl	74_37	-1	known	silent	c.3534	p.S1178	0.000	NULL	NULL	-	no_errors	TNKS1BP1	HGNC	ENSG00000149115				77	0	0	63	7	10
ZDHHC5	0	genome.wustl.edu	37	11	57440666	57440666	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	57440666	57440666	C	T	SNP	ZDHHC5	ENST00000287169	human	ensembl	74_37	+1	known	missense	c.104	p.T35M	1.000	NULL	pfam_Znf_DHHC_palmitoyltrfase,superfamily_Plexin-like_fold,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC5	HGNC	ENSG00000156599				77	0	0	40	17	29.8246
CTNND1	0	genome.wustl.edu	37	11	57575947	57575947	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	57575947	57575947	T	C	SNP	CTNND1	ENST00000399050	human	ensembl	74_37	+1	known	missense	c.2177	p.V726A	1.000	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	CTNND1	HGNC	ENSG00000198561				128	1	0.775194	99	6	5.71429
OR10Q1	0	genome.wustl.edu	37	11	57996067	57996067	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	57996067	57996067	T	C	SNP	OR10Q1	ENST00000316770	human	ensembl	74_37	-1	known	missense	c.281	p.K94R	0.152	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10Q1	HGNC	ENSG00000180475				46	0	0	47	7	12.963
OR5B2	0	genome.wustl.edu	37	11	58190409	58190409	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	58190409	58190409	T	C	SNP	OR5B2	ENST00000302581	human	ensembl	74_37	-1	known	missense	c.326	p.E109G	0.026	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5B2	HGNC	ENSG00000172365				103	0	0	103	9	8.03571
PHRF1	0	genome.wustl.edu	37	11	582040	582040	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	582040	582040	A	G	SNP	PHRF1	ENST00000264555	human	ensembl	74_37	+1	known	missense	c.173	p.D58G	0.109	NULL	pfam_Znf_PHD-finger,pfam_Znf_C3HC4_RING-type,superfamily_Znf_FYVE_PHD,smart_Znf_RING,smart_Znf_PHD,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	PHRF1	HGNC	ENSG00000070047				11	0	0	15	5	25
OR5B12	0	genome.wustl.edu	37	11	58207236	58207236	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	58207236	58207236	T	C	SNP	OR5B12	ENST00000302572	human	ensembl	74_37	-1	known	missense	c.389	p.Y130C	0.995	pfam_GPCR_Rhodpsn,prints_Olfact_rcpt,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR5B12	HGNC	ENSG00000172362				157	0	0	126	9	6.66667
OR5B21	0	genome.wustl.edu	37	11	58275329	58275329	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	58275329	58275329	G	A	SNP	OR5B21	ENST00000360374	human	ensembl	74_37	-1	known	missense	c.250	p.R84W	0.155	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5B21	HGNC	ENSG00000198283				42	0	0	34	7	17.0732
GLYAT	0	genome.wustl.edu	37	11	58478068	58478068	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	58478068	58478068	C	A	SNP	GLYAT	ENST00000344743	human	ensembl	74_37	-1	known	missense	c.483	p.K161N	0.034	pfam_Glycine_N-acyltransferase_N,superfamily_Acyl_CoA_acyltransferase	pfam_Glycine_N-acyltransferase_N,pfam_Glycine_N-acyltransferase_C,superfamily_Acyl_CoA_acyltransferase	-	no_errors	GLYAT	HGNC	ENSG00000149124				167	0	0	115	10	8
GLYAT	0	genome.wustl.edu	37	11	58478159	58478159	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	58478159	58478159	C	T	SNP	GLYAT	ENST00000344743	human	ensembl	74_37	-1	known	missense	c.392	p.R131H	0.000	pfam_Glycine_N-acyltransferase_N,superfamily_Acyl_CoA_acyltransferase	pfam_Glycine_N-acyltransferase_N,pfam_Glycine_N-acyltransferase_C,superfamily_Acyl_CoA_acyltransferase	-	no_errors	GLYAT	HGNC	ENSG00000149124				163	0	0	118	8	6.34921
OR52E6	0	genome.wustl.edu	37	11	5863013	5863013	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	5863013	5863013	T	A	SNP	OR52E6	ENST00000379946	human	ensembl	74_37	-1	known	missense	c.127	p.I43F	0.000	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR52E6	HGNC	ENSG00000205409				116	0	0	84	10	10.6383
DTX4	0	genome.wustl.edu	37	11	58949402	58949402	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	58949402	58949402	A	G	SNP	DTX4	ENST00000227451	human	ensembl	74_37	+1	known	silent	c.402	p.V134	1.000	pfam_WWE-dom,smart_WWE-dom_subgr,pfscan_WWE-dom	pfam_WWE-dom,pfam_Znf_C3HC4_RING-type,smart_WWE-dom_subgr,smart_Znf_RING,pfscan_WWE-dom,pfscan_Znf_RING	-	no_errors	DTX4	HGNC	ENSG00000110042				112	0	0	94	11	10.4762
MPEG1	0	genome.wustl.edu	37	11	58978613	58978613	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	58978613	58978613	A	G	SNP	MPEG1	ENST00000361050	human	ensembl	74_37	-1	known	missense	c.1726	p.Y576H	1.000	NULL	pfam_MACPF,smart_MACPF	-	no_errors	MPEG1	HGNC	ENSG00000197629				141	0	0	117	8	6.4
MPEG1	0	genome.wustl.edu	37	11	58979219	58979219	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	58979219	58979219	T	C	SNP	MPEG1	ENST00000361050	human	ensembl	74_37	-1	known	missense	c.1120	p.T374A	0.987	NULL	pfam_MACPF,smart_MACPF	-	no_errors	MPEG1	HGNC	ENSG00000197629				140	0	0	98	31	24.031
OR52E4	0	genome.wustl.edu	37	11	5905954	5905954	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	5905954	5905954	T	C	SNP	OR52E4	ENST00000316987	human	ensembl	74_37	+1	known	silent	c.432	p.S144	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR52E4	HGNC	ENSG00000180974				170	0	0	132	9	6.38298
PHRF1	0	genome.wustl.edu	37	11	592628	592628	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	592628	592628	A	G	SNP	PHRF1	ENST00000264555	human	ensembl	74_37	+1	known	missense	c.574	p.S192G	1.000	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Znf_RING,pfscan_Znf_PHD-finger	pfam_Znf_PHD-finger,pfam_Znf_C3HC4_RING-type,superfamily_Znf_FYVE_PHD,smart_Znf_RING,smart_Znf_PHD,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	PHRF1	HGNC	ENSG00000070047				156	0	0	141	10	6.62252
OR4D11	0	genome.wustl.edu	37	11	59271510	59271510	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	59271510	59271510	C	T	SNP	OR4D11	ENST00000313253	human	ensembl	74_37	+1	known	silent	c.462	p.V154	0.667	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4D11	HGNC	ENSG00000176200				203	0	0	154	22	12.5
PLAC1L	0	genome.wustl.edu	37	11	59814517	59814517	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	59814517	59814517	T	C	SNP	PLAC1L	ENST00000278855	human	ensembl	74_37	+1	known	silent	c.448	p.L150	0.955	NULL	NULL	-	no_errors	PLAC1L	HGNC	ENSG00000149507				118	0	0	78	6	7.14286
PHRF1	0	genome.wustl.edu	37	11	598394	598394	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	598394	598394	T	A	SNP	PHRF1	ENST00000264555	human	ensembl	74_37	+1	known	missense	c.916	p.S306T	0.970	NULL	pfam_Znf_PHD-finger,pfam_Znf_C3HC4_RING-type,superfamily_Znf_FYVE_PHD,smart_Znf_RING,smart_Znf_PHD,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	PHRF1	HGNC	ENSG00000070047				32	0	0	31	3	8.82353
OR52L1	0	genome.wustl.edu	37	11	6007329	6007329	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	6007329	6007329	G	T	SNP	OR52L1	ENST00000332249	human	ensembl	74_37	-1	known	missense	c.832	p.L278I	0.999	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR52L1	HGNC	ENSG00000183313				59	0	0	51	5	8.92857
MS4A14	0	genome.wustl.edu	37	11	60183917	60183917	+	Silent	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	60183917	60183917	C	A	SNP	MS4A14	ENST00000300187	human	ensembl	74_37	+1	known	silent	c.1476	p.T492	0.000	NULL	pfam_CD20-like	-	no_errors	MS4A14	HGNC	ENSG00000166928				120	0	0	109	10	8.40336
MS4A12	0	genome.wustl.edu	37	11	60264792	60264792	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	60264792	60264792	A	C	SNP	MS4A12	ENST00000016913	human	ensembl	74_37	+1	known	missense	c.1	p.M1L	0.000	NULL	pfam_CD20-like	-	no_errors	MS4A12	HGNC	ENSG00000071203				105	0	0	85	5	5.55556
MS4A13	0	genome.wustl.edu	37	11	60285576	60285576	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	60285576	60285576	T	C	SNP	MS4A13	ENST00000378186	human	ensembl	74_37	+1	known	missense	c.20	p.I7T	0.002	pfam_CD20-like	pfam_CD20-like	-	no_errors	MS4A13	HGNC	ENSG00000204979				79	0	0	59	4	6.34921
OR56A1	0	genome.wustl.edu	37	11	6048082	6048082	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	6048082	6048082	C	T	SNP	OR56A1	ENST00000316650	human	ensembl	74_37	-1	known	missense	c.853	p.V285I	0.001	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR56A1	HGNC	ENSG00000180934				134	1	0.740741	120	15	11.1111
CCDC86	0	genome.wustl.edu	37	11	60609969	60609969	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	60609969	60609969	A	G	SNP	CCDC86	ENST00000227520	human	ensembl	74_37	+1	known	silent	c.372	p.A124	0.000	NULL	NULL	-	no_errors	CCDC86	HGNC	ENSG00000110104				78	0	0	71	8	10.1266
CCDC86	0	genome.wustl.edu	37	11	60615443	60615443	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	60615443	60615443	C	T	SNP	CCDC86	ENST00000227520	human	ensembl	74_37	+1	known	missense	c.805	p.R269W	1.000	NULL	NULL	-	no_errors	CCDC86	HGNC	ENSG00000110104				110	0	0	95	13	12.037
CCDC86	0	genome.wustl.edu	37	11	60615518	60615518	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	60615518	60615518	C	A	SNP	CCDC86	ENST00000227520	human	ensembl	74_37	+1	known	missense	c.880	p.R294S	0.785	NULL	NULL	-	no_errors	CCDC86	HGNC	ENSG00000110104				76	0	0	50	5	9.09091
CCDC86	0	genome.wustl.edu	37	11	60617771	60617771	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	60617771	60617771	G	A	SNP	CCDC86	ENST00000227520	human	ensembl	74_37	+1	known	silent	c.1056	p.P352	0.305	NULL	NULL	-	no_errors	CCDC86	HGNC	ENSG00000110104				53	0	0	54	8	12.9032
ZP1	0	genome.wustl.edu	37	11	60637016	60637016	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	60637016	60637016	C	T	SNP	ZP1	ENST00000278853	human	ensembl	74_37	+1	known	missense	c.325	p.R109C	0.003	NULL	pfam_ZP_dom,superfamily_P_trefoil,smart_P_trefoil,smart_ZP_dom,pfscan_ZP_dom,prints_ZP_dom	-	no_errors	ZP1	HGNC	ENSG00000149506				34	0	0	39	8	17.0213
ZP1	0	genome.wustl.edu	37	11	60637914	60637914	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	60637914	60637914	C	T	SNP	ZP1	ENST00000278853	human	ensembl	74_37	+1	known	silent	c.792	p.N264	0.014	superfamily_P_trefoil,smart_P_trefoil	pfam_ZP_dom,superfamily_P_trefoil,smart_P_trefoil,smart_ZP_dom,pfscan_ZP_dom,prints_ZP_dom	-	no_errors	ZP1	HGNC	ENSG00000149506				77	0	0	73	6	7.59494
ZP1	0	genome.wustl.edu	37	11	60642608	60642608	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	60642608	60642608	G	A	SNP	ZP1	ENST00000278853	human	ensembl	74_37	+1	known	missense	c.1661	p.R554Q	0.000	NULL	pfam_ZP_dom,superfamily_P_trefoil,smart_P_trefoil,smart_ZP_dom,pfscan_ZP_dom,prints_ZP_dom	-	no_errors	ZP1	HGNC	ENSG00000149506				94	0	0	79	7	8.13953
TMEM109	0	genome.wustl.edu	37	11	60689443	60689443	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	60689443	60689443	C	T	SNP	TMEM109	ENST00000227525	human	ensembl	74_37	+1	known	missense	c.538	p.P180S	1.000	NULL	NULL	-	no_errors	TMEM109	HGNC	ENSG00000110108				86	0	0	75	9	10.7143
TMEM132A	0	genome.wustl.edu	37	11	60704348	60704348	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	60704348	60704348	A	G	SNP	TMEM132A	ENST00000005286	human	ensembl	74_37	+1	known	missense	c.3044	p.N1015S	1.000	NULL	NULL	-	no_errors	TMEM132A	HGNC	ENSG00000006118				46	0	0	41	3	6.81818
CD6	0	genome.wustl.edu	37	11	60783197	60783197	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	60783197	60783197	C	A	SNP	CD6	ENST00000313421	human	ensembl	74_37	+1	known	missense	c.1400	p.P467H	0.910	NULL	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR,prints_SRCR	-	no_errors	CD6	HGNC	ENSG00000013725				83	0	0	89	13	12.7451
DDB1	0	genome.wustl.edu	37	11	61079550	61079550	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	61079550	61079550	C	T	SNP	DDB1	ENST00000301764	human	ensembl	74_37	-1	known	silent	c.2076	p.A692	0.068	NULL	pfam_Cleavage/polyA-sp_fac_asu_C	-	no_errors	DDB1	HGNC	ENSG00000167986				106	0	0	93	10	9.70874
DDB1	0	genome.wustl.edu	37	11	61081422	61081422	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	61081422	61081422	G	A	SNP	DDB1	ENST00000301764	human	ensembl	74_37	-1	known	silent	c.1773	p.I591	1.000	NULL	pfam_Cleavage/polyA-sp_fac_asu_C	-	no_errors	DDB1	HGNC	ENSG00000167986				85	0	0	54	4	6.89655
DAK	0	genome.wustl.edu	37	11	61113377	61113377	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	61113377	61113377	C	A	SNP	DAK	ENST00000394900	human	ensembl	74_37	+1	known	missense	c.1534	p.P512T	0.991	pfam_DhaL_dom,superfamily_DhaL_dom,tigrfam_DhaK_ATP	pfam_Dak1,pfam_DhaL_dom,superfamily_DhaL_dom,tigrfam_DhaK_ATP	-	no_errors	DAK	HGNC	ENSG00000149476				77	0	0	90	5	5.26316
PPP1R32	0	genome.wustl.edu	37	11	61257286	61257286	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	61257286	61257286	A	T	SNP	PPP1R32	ENST00000338608	human	ensembl	74_37	+1	known	missense	c.1076	p.Q359L	1.000	NULL	NULL	-	no_errors	PPP1R32	HGNC	ENSG00000162148				41	0	0	39	4	9.30233
SYT7	0	genome.wustl.edu	37	11	61300478	61300478	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	61300478	61300478	T	C	SNP	SYT7	ENST00000263846	human	ensembl	74_37	-1	known	missense	c.334	p.T112A	1.000	NULL	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom,prints_Synaptotagmin,prints_C2_dom	-	no_errors	SYT7	HGNC	ENSG00000011347				69	0	0	81	5	5.81395
MYRF	0	genome.wustl.edu	37	11	61533179	61533179	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	61533179	61533179	C	T	SNP	MYRF	ENST00000278836	human	ensembl	74_37	+1	known	silent	c.129	p.S43	0.870	NULL	pfam_NDT80_DNA-bd_dom,superfamily_p53-like_TF_DNA-bd	-	no_errors	MYRF	HGNC	ENSG00000124920				10	0	0	11	4	26.6667
MYRF	0	genome.wustl.edu	37	11	61544824	61544824	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	61544824	61544824	T	C	SNP	MYRF	ENST00000278836	human	ensembl	74_37	+1	known	missense	c.1679	p.V560A	0.998	NULL	pfam_NDT80_DNA-bd_dom,superfamily_p53-like_TF_DNA-bd	-	no_errors	MYRF	HGNC	ENSG00000124920				54	0	0	54	3	5.26316
FADS2	0	genome.wustl.edu	37	11	61615659	61615659	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	61615659	61615659	G	A	SNP	FADS2	ENST00000278840	human	ensembl	74_37	+1	known	missense	c.647	p.R216H	1.000	pfam_Fatty_acid_desaturase-1,pirsf_Fatty_acid/sphinglp_desaturase	pfam_Fatty_acid_desaturase-1,pfam_Cyt_B5-like_heme/steroid-bd,superfamily_Cyt_B5-like_heme/steroid-bd,pirsf_Fatty_acid/sphinglp_desaturase,pfscan_Cyt_B5-like_heme/steroid-bd	-	no_errors	FADS2	HGNC	ENSG00000134824				53	0	0	49	8	14.0351
FTH1	0	genome.wustl.edu	37	11	61732893	61732893	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	61732893	61732893	A	G	SNP	FTH1	ENST00000273550	human	ensembl	74_37	-1	known	missense	c.209	p.L70P	1.000	pfam_Ferritin_DPS_dom,superfamily_Ferritin-like_SF,pfscan_Ferritin-like_diiron	pfam_Ferritin_DPS_dom,superfamily_Ferritin-like_SF,pfscan_Ferritin-like_diiron	-	no_errors	FTH1	HGNC	ENSG00000167996				254	0	0	214	23	9.70464
SCGB1D1	0	genome.wustl.edu	37	11	61959627	61959627	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	61959627	61959627	C	T	SNP	SCGB1D1	ENST00000306238	human	ensembl	74_37	+1	known	missense	c.155	p.P52L	0.033	pfam_Secretoglobin,superfamily_Secretoglobin	pfam_Secretoglobin,superfamily_Secretoglobin	-	no_errors	SCGB1D1	HGNC	ENSG00000168515				83	0	0	72	8	10
AHNAK	0	genome.wustl.edu	37	11	62301413	62301413	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	62301413	62301413	G	A	SNP	AHNAK	ENST00000378024	human	ensembl	74_37	-1	known	missense	c.476	p.A159V	1.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK	HGNC	ENSG00000124942				109	0	0	108	14	11.4754
EEF1G	0	genome.wustl.edu	37	11	62338549	62338549	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	62338549	62338549	C	T	SNP	EEF1G	ENST00000378019	human	ensembl	74_37	-1	known	missense	c.560	p.R187Q	0.998	pfam_GST_C,superfamily_Glutathione-S-Trfase_C-like	pfam_Transl_elong_EF1_G_con,pfam_Glutathione_S-Trfase_N,pfam_GST_C,superfamily_Transl_elong_EF1_G_con,superfamily_Glutathione-S-Trfase_C-like,superfamily_Thioredoxin-like_fold,pfscan_Transl_elong_EF1_G_con	-	no_errors	EEF1G	HGNC	ENSG00000254772				96	0	0	101	11	9.82143
GANAB	0	genome.wustl.edu	37	11	62394111	62394111	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	62394111	62394111	G	A	SNP	GANAB	ENST00000346178	human	ensembl	74_37	-1	known	nonsense	c.2509	p.R837*	1.000	NULL	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF,superfamily_Gal_mutarotase_SF_dom	-	no_errors	GANAB	HGNC	ENSG00000089597				22	0	0	19	3	13.6364
FAM160A2	0	genome.wustl.edu	37	11	6239971	6239971	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	6239971	6239971	C	T	SNP	FAM160A2	ENST00000265978	human	ensembl	74_37	-1	known	missense	c.1294	p.V432I	1.000	NULL	pfam_RetinoicA-induced_16-like	-	no_errors	FAM160A2	HGNC	ENSG00000051009				144	0	0	102	28	21.5385
INTS5	0	genome.wustl.edu	37	11	62416356	62416356	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	62416356	62416356	G	T	SNP	INTS5	ENST00000330574	human	ensembl	74_37	-1	known	missense	c.1196	p.S399Y	0.996	NULL	NULL	-	no_errors	INTS5	HGNC	ENSG00000185085				36	0	0	44	4	8.33333
FAM160A2	0	genome.wustl.edu	37	11	6243821	6243821	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	6243821	6243821	T	A	SNP	FAM160A2	ENST00000265978	human	ensembl	74_37	-1	known	missense	c.1042	p.I348F	1.000	pfam_RetinoicA-induced_16-like	pfam_RetinoicA-induced_16-like	-	no_errors	FAM160A2	HGNC	ENSG00000051009				49	0	0	45	6	11.7647
CDHR5	0	genome.wustl.edu	37	11	624878	624878	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	624878	624878	G	A	SNP	CDHR5	ENST00000358353	human	ensembl	74_37	-1	known	missense	c.25	p.P9S	0.025	NULL	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	-	no_errors	CDHR5	HGNC	ENSG00000099834				10	0	0	11	3	21.4286
ZBTB3	0	genome.wustl.edu	37	11	62520498	62520498	+	Silent	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	62520498	62520498	T	A	SNP	ZBTB3	ENST00000394807	human	ensembl	74_37	-1	known	silent	c.789	p.P263	0.168	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB3	HGNC	ENSG00000185670				28	0	0	25	6	19.3548
NXF1	0	genome.wustl.edu	37	11	62569076	62569076	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	62569076	62569076	A	G	SNP	NXF1	ENST00000294172	human	ensembl	74_37	-1	known	missense	c.667	p.S223P	1.000	NULL	pfam_Tap_RNA-bd,pfam_NTF2,pfam_TAP_C_dom,pfam_Leu-rich_rpt,superfamily_UBA-like,smart_TAP_C_dom,pfscan_Nuclear_transport_factor_2_euk	-	no_errors	NXF1	HGNC	ENSG00000162231				141	0	0	141	15	9.61538
WDR74	0	genome.wustl.edu	37	11	62600597	62600597	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	62600597	62600597	G	T	SNP	WDR74	ENST00000278856	human	ensembl	74_37	-1	known	missense	c.985	p.P329T	0.998	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	WDR74	HGNC	ENSG00000133316				27	0	0	37	5	11.9048
SNHG1	0	genome.wustl.edu	37	11	62622655	62622655	+	RNA	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	62622655	62622655	T	C	SNP	SNHG1	ENST00000537068	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.064	-	-	-	no_errors	SNHG1	HGNC	ENSG00000255717				39	0	0	37	3	7.5
CHRM1	0	genome.wustl.edu	37	11	62677758	62677758	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	62677758	62677758	T	G	SNP	CHRM1	ENST00000306960	human	ensembl	74_37	-1	known	missense	c.815	p.Y272S	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Musac_Ach_M1_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Musac_Ach_M1_rcpt,prints_Musac_Ach_rcpt,prints_GPCR_Rhodpsn	-	no_errors	CHRM1	HGNC	ENSG00000168539				141	0	0	103	18	14.876
CCKBR	0	genome.wustl.edu	37	11	6292256	6292256	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	6292256	6292256	A	G	SNP	CCKBR	ENST00000525462	human	ensembl	74_37	+1	known	missense	c.1034	p.N345S	0.649	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Gastrin_rcpt,prints_Cholcskin_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	CCKBR	HGNC	ENSG00000110148				65	0	0	86	6	6.52174
RTN3	0	genome.wustl.edu	37	11	63472327	63472327	+	Silent	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	63472327	63472327	C	A	SNP	RTN3	ENST00000377819	human	ensembl	74_37	+1	known	silent	c.147	p.S49	1.000	NULL	pfam_Reticulon,pfscan_Reticulon	-	no_errors	RTN3	HGNC	ENSG00000133318				171	0	0	124	16	11.4286
RTN3	0	genome.wustl.edu	37	11	63488173	63488173	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	63488173	63488173	A	G	SNP	RTN3	ENST00000377819	human	ensembl	74_37	+1	known	silent	c.2199	p.V733	0.003	NULL	pfam_Reticulon,pfscan_Reticulon	-	no_errors	RTN3	HGNC	ENSG00000133318				57	0	0	44	4	8.33333
RCOR2	0	genome.wustl.edu	37	11	63681532	63681532	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	63681532	63681532	C	T	SNP	RCOR2	ENST00000301459	human	ensembl	74_37	-1	known	missense	c.785	p.G262D	1.000	NULL	pfam_SANT/Myb,pfam_ELM2_dom,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_ELM2_dom	-	no_errors	RCOR2	HGNC	ENSG00000167771				114	0	0	122	17	12.2302
STIP1	0	genome.wustl.edu	37	11	63970965	63970965	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	63970965	63970965	A	G	SNP	STIP1	ENST00000305218	human	ensembl	74_37	+1	known	missense	c.1430	p.N477S	1.000	NULL	pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,smart_STI1_HS-bd,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	STIP1	HGNC	ENSG00000168439				30	0	0	27	4	12.9032
PLCB3	0	genome.wustl.edu	37	11	64026012	64026012	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	64026012	64026012	C	T	SNP	PLCB3	ENST00000279230	human	ensembl	74_37	+1	known	silent	c.1080	p.C360	0.996	pirsf_PLC-beta,pfam_PLipase_C_PInositol-sp_X_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_PInositol-sp_X_dom,prints_Pinositol_PLipase_C,pfscan_PLipase_C_PInositol-sp_X_dom	pirsf_PLC-beta,pfam_PLC-beta_C,pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,pfam_PLC-beta_CS,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,prints_Pinositol_PLipase_C,pfscan_C2_dom,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCB3	HGNC	ENSG00000149782				80	0	0	69	8	10.3896
PLCB3	0	genome.wustl.edu	37	11	64031258	64031258	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	64031258	64031258	G	A	SNP	PLCB3	ENST00000279230	human	ensembl	74_37	+1	known	missense	c.2551	p.D851N	1.000	pirsf_PLC-beta	pirsf_PLC-beta,pfam_PLC-beta_C,pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,pfam_PLC-beta_CS,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,prints_Pinositol_PLipase_C,pfscan_C2_dom,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCB3	HGNC	ENSG00000149782				77	0	0	68	19	21.8391
PLCB3	0	genome.wustl.edu	37	11	64032685	64032685	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	64032685	64032685	C	T	SNP	PLCB3	ENST00000279230	human	ensembl	74_37	+1	known	missense	c.2828	p.A943V	0.997	pirsf_PLC-beta	pirsf_PLC-beta,pfam_PLC-beta_C,pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,pfam_PLC-beta_CS,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,prints_Pinositol_PLipase_C,pfscan_C2_dom,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCB3	HGNC	ENSG00000149782				12	0	0	11	3	21.4286
BAD	0	genome.wustl.edu	37	11	64037796	64037796	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	64037796	64037796	C	T	SNP	BAD	ENST00000309032	human	ensembl	74_37	-1	known	missense	c.392	p.R131H	1.000	pfam_Bcl-2_BAD	pfam_Bcl-2_BAD	-	no_errors	BAD	HGNC	ENSG00000002330				60	0	0	66	7	9.58904
SLC22A12	0	genome.wustl.edu	37	11	64367342	64367342	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	64367342	64367342	C	T	SNP	SLC22A12	ENST00000377574	human	ensembl	74_37	+1	known	missense	c.1265	p.A422V	1.000	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A12	HGNC	ENSG00000197891				36	0	0	29	10	25.641
NRXN2	0	genome.wustl.edu	37	11	64453147	64453147	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	64453147	64453147	C	T	SNP	NRXN2	ENST00000265459	human	ensembl	74_37	-1	known	missense	c.1123	p.D375N	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN2	HGNC	ENSG00000110076				102	0	0	70	18	20.4545
RASGRP2	0	genome.wustl.edu	37	11	64508434	64508434	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	64508434	64508434	G	A	SNP	RASGRP2	ENST00000377494	human	ensembl	74_37	-1	known	silent	c.357	p.I119	0.844	superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,pfscan_Ras-like_Gua-exchang_fac_N	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,smart_EF_hand_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_EF_hand_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGRP2	HGNC	ENSG00000068831				42	0	0	39	8	17.0213
SF1	0	genome.wustl.edu	37	11	64540944	64540944	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	64540944	64540944	A	G	SNP	SF1	ENST00000377390	human	ensembl	74_37	-1	known	missense	c.194	p.L65P	1.000	NULL	pfam_KH_dom_type_1,pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_KH_dom,smart_Znf_CCHC,pfscan_Znf_CCHC,pfscan_KH_dom_type_1	-	no_errors	SF1	HGNC	ENSG00000168066				60	0	0	42	5	10.6383
MAP4K2	0	genome.wustl.edu	37	11	64559444	64559444	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	64559444	64559444	G	A	SNP	MAP4K2	ENST00000294066	human	ensembl	74_37	-1	known	missense	c.2029	p.R677C	0.650	pfam_Citron,smart_Citron	pfam_Prot_kinase_dom,pfam_Citron,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_dom	-	no_errors	MAP4K2	HGNC	ENSG00000168067				15	0	0	9	3	25
MAP4K2	0	genome.wustl.edu	37	11	64566297	64566297	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	64566297	64566297	A	G	SNP	MAP4K2	ENST00000294066	human	ensembl	74_37	-1	known	missense	c.1066	p.W356R	1.000	NULL	pfam_Prot_kinase_dom,pfam_Citron,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_dom	-	no_errors	MAP4K2	HGNC	ENSG00000168067				186	1	0.534759	211	12	5.38117
BATF2	0	genome.wustl.edu	37	11	64757142	64757142	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	64757142	64757142	C	A	SNP	BATF2	ENST00000301887	human	ensembl	74_37	-1	known	missense	c.284	p.G95V	0.000	NULL	pfam_bZIP,superfamily_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	BATF2	HGNC	ENSG00000168062				29	0	0	27	2	6.89655
TRIM3	0	genome.wustl.edu	37	11	6486843	6486843	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	6486843	6486843	C	T	SNP	TRIM3	ENST00000345851	human	ensembl	74_37	-1	known	missense	c.83	p.R28Q	1.000	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	pfam_NHL_repeat,pfam_Filamin/ABP280_repeat-like,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_Ig_E-set,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Filamin,pfscan_Filamin/ABP280_repeat-like,pfscan_NHL_repeat_subgr,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM3	HGNC	ENSG00000110171				76	0	0	94	5	5.05051
ZNHIT2	0	genome.wustl.edu	37	11	64884013	64884013	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	64884013	64884013	T	C	SNP	ZNHIT2	ENST00000310597	human	ensembl	74_37	-1	known	silent	c.1113	p.V371	0.000	NULL	pfam_Znf_HIT,pfscan_Znf_HIT	-	no_errors	ZNHIT2	HGNC	ENSG00000174276				66	0	0	89	8	8.24742
SPDYC	0	genome.wustl.edu	37	11	64939752	64939752	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	64939752	64939752	C	T	SNP	SPDYC	ENST00000377185	human	ensembl	74_37	+1	known	silent	c.294	p.R98	0.028	pfam_Cell_cycle_regulatory_Spy1	pfam_Cell_cycle_regulatory_Spy1	-	no_errors	SPDYC	HGNC	ENSG00000204710				89	0	0	78	24	23.5294
POLA2	0	genome.wustl.edu	37	11	65049201	65049201	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	65049201	65049201	G	A	SNP	POLA2	ENST00000265465	human	ensembl	74_37	+1	known	missense	c.961	p.E321K	1.000	pirsf_DNA_pol_alpha_bsu	pfam_Pol_alpha_B_N,pfam_DNA_pol_alpha/epsilon_bsu,pirsf_DNA_pol_alpha_bsu	-	no_errors	POLA2	HGNC	ENSG00000014138				86	0	0	57	19	25
FRMD8	0	genome.wustl.edu	37	11	65178714	65178714	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	65178714	65178714	C	T	SNP	FRMD8	ENST00000317568	human	ensembl	74_37	+1	known	silent	c.1278	p.G426	0.921	NULL	pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	-	no_errors	FRMD8	HGNC	ENSG00000126391				40	0	0	39	5	11.3636
PCNXL3	0	genome.wustl.edu	37	11	65393441	65393441	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	65393441	65393441	C	T	SNP	PCNXL3	ENST00000355703	human	ensembl	74_37	+1	known	missense	c.3295	p.P1099S	1.000	NULL	pfam_Pecanex	-	no_errors	PCNXL3	HGNC	ENSG00000197136				35	0	0	32	7	17.9487
PCNXL3	0	genome.wustl.edu	37	11	65403965	65403965	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	65403965	65403965	C	T	SNP	PCNXL3	ENST00000355703	human	ensembl	74_37	+1	known	silent	c.5697	p.P1899	0.997	NULL	pfam_Pecanex	-	no_errors	PCNXL3	HGNC	ENSG00000197136				24	0	0	29	11	27.5
CTSW	0	genome.wustl.edu	37	11	65650817	65650817	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	65650817	65650817	G	A	SNP	CTSW	ENST00000307886	human	ensembl	74_37	+1	known	silent	c.942	p.S314	0.000	pfam_Peptidase_C1A_C,smart_Peptidase_C1A_C	pfam_Peptidase_C1A_C,pfam_Prot_inhib_I29,smart_Prot_inhib_I29,smart_Peptidase_C1A_C,prints_Peptidase_C1A_C	-	no_errors	CTSW	HGNC	ENSG00000172543				72	0	0	86	6	6.52174
DRAP1	0	genome.wustl.edu	37	11	65688892	65688892	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	65688892	65688892	G	T	SNP	DRAP1	ENST00000312515	human	ensembl	74_37	+1	known	missense	c.604	p.D202Y	1.000	NULL	pfam_CBFA_NFYB_domain,pfam_Histone_core_D,superfamily_Histone-fold	-	no_errors	DRAP1	HGNC	ENSG00000175550				78	0	0	90	6	6.25
EIF1AD	0	genome.wustl.edu	37	11	65767122	65767122	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	65767122	65767122	A	G	SNP	EIF1AD	ENST00000312234	human	ensembl	74_37	-1	known	missense	c.221	p.I74T	1.000	pfam_RNA-binding_domain_S1_IF1,superfamily_NA-bd_OB-fold,smart_TIF_eIF-1A,pfscan_RNA-binding_domain_S1_IF1	pfam_RNA-binding_domain_S1_IF1,superfamily_NA-bd_OB-fold,smart_TIF_eIF-1A,pfscan_RNA-binding_domain_S1_IF1	-	no_errors	EIF1AD	HGNC	ENSG00000175376				70	0	0	59	6	9.23077
BANF1	0	genome.wustl.edu	37	11	65771097	65771097	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	65771097	65771097	G	A	SNP	BANF1	ENST00000312175	human	ensembl	74_37	+1	known	missense	c.124	p.A42T	1.000	pfam_BAF_prot,superfamily_BAF_prot	pfam_BAF_prot,superfamily_BAF_prot	-	no_errors	BANF1	HGNC	ENSG00000175334				102	0	0	85	8	8.60215
YIF1A	0	genome.wustl.edu	37	11	66052412	66052412	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	66052412	66052412	G	A	SNP	YIF1A	ENST00000376901	human	ensembl	74_37	-1	known	silent	c.667	p.L223	0.999	pfam_Hrf1,pfam_Yip1	pfam_Hrf1,pfam_Yip1	-	no_errors	YIF1A	HGNC	ENSG00000174851				54	0	0	46	5	9.80392
BRMS1	0	genome.wustl.edu	37	11	66106244	66106244	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	66106244	66106244	A	C	SNP	BRMS1	ENST00000425825	human	ensembl	74_37	-1	known	missense	c.641	p.V214G	1.000	pfam_Sds3	pfam_Sds3	-	no_errors	BRMS1	HGNC	ENSG00000174744				67	0	0	47	4	7.84314
NPAS4	0	genome.wustl.edu	37	11	66190621	66190621	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	66190621	66190621	C	T	SNP	NPAS4	ENST00000311034	human	ensembl	74_37	+1	known	silent	c.726	p.R242	1.000	pfam_PAS_fold_3,superfamily_PAS,smart_PAS,pfscan_PAS	pfam_PAS_fold_3,superfamily_PAS,smart_PAS,pfscan_PAS	-	no_errors	NPAS4	HGNC	ENSG00000174576				26	0	0	21	3	12.5
BBS1	0	genome.wustl.edu	37	11	66288771	66288771	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	66288771	66288771	G	T	SNP	BBS1	ENST00000419755	human	ensembl	74_37	+1	known	nonsense	c.865	p.E289*	1.000	superfamily_Quinonprotein_ADH-like_supfam	superfamily_Quinonprotein_ADH-like_supfam	-	no_errors	CTD-3074O7.11	Clone_based_vega_gene	ENSG00000256349				94	0	0	93	7	7
CCDC87	0	genome.wustl.edu	37	11	66357969	66357969	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	66357969	66357969	T	A	SNP	CCDC87	ENST00000333861	human	ensembl	74_37	-1	known	missense	c.2518	p.T840S	0.000	pfam_MAP65_Ase1_PRC1	pfam_MAP65_Ase1_PRC1	-	no_errors	CCDC87	HGNC	ENSG00000182791				142	0	0	129	16	11.0345
TPP1	0	genome.wustl.edu	37	11	6638383	6638383	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	6638383	6638383	C	T	SNP	TPP1	ENST00000299427	human	ensembl	74_37	-1	known	silent	c.510	p.V170	1.000	pfam_Peptidase_S53_propep,superfamily_Prot_inh_propept,smart_Peptidase_S53_propep	pfam_Peptidase_S53_propep,pfam_Peptidase_S8/S53_dom,superfamily_Peptidase_S8/S53_dom,superfamily_Prot_inh_propept,smart_Peptidase_S53_propep	-	no_errors	TPP1	HGNC	ENSG00000166340				60	0	0	56	6	9.67742
RBM14	0	genome.wustl.edu	37	11	66393066	66393066	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	66393066	66393066	G	A	SNP	RBM14	ENST00000310137	human	ensembl	74_37	+1	known	silent	c.1719	p.P573	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM14	HGNC	ENSG00000239306				19	0	0	24	3	11.1111
RBM4	0	genome.wustl.edu	37	11	66411054	66411054	+	Silent	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	66411054	66411054	C	A	SNP	RBM4	ENST00000310092	human	ensembl	74_37	+1	known	silent	c.546	p.R182	1.000	NULL	pfam_RRM_dom,pfam_Znf_CCHC,smart_RRM_dom,smart_Znf_CCHC,pfscan_Znf_CCHC,pfscan_RRM_dom	-	no_errors	RBM4	HGNC	ENSG00000173933				67	0	0	38	6	13.6364
RBM4B	0	genome.wustl.edu	37	11	66444271	66444271	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	66444271	66444271	G	T	SNP	RBM4B	ENST00000310046	human	ensembl	74_37	-1	known	missense	c.280	p.L94I	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,pfam_Znf_CCHC,smart_RRM_dom,smart_Znf_CCHC,pfscan_Znf_CCHC,pfscan_RRM_dom	-	no_errors	RBM4B	HGNC	ENSG00000173914				287	0	0	251	17	6.34328
SPTBN2	0	genome.wustl.edu	37	11	66453564	66453564	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	66453564	66453564	G	A	SNP	SPTBN2	ENST00000309996	human	ensembl	74_37	-1	known	silent	c.6951	p.S2317	1.000	pirsf_Spectrin_bsu,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_Pleckstrin_homology	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTBN2	HGNC	ENSG00000173898				21	0	0	18	6	25
SPTBN2	0	genome.wustl.edu	37	11	66476409	66476409	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	66476409	66476409	C	T	SNP	SPTBN2	ENST00000309996	human	ensembl	74_37	-1	known	silent	c.1155	p.T385	0.848	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTBN2	HGNC	ENSG00000173898				95	0	0	82	8	8.88889
C11orf80	0	genome.wustl.edu	37	11	66555668	66555668	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	66555668	66555668	G	A	SNP	C11orf80	ENST00000360962	human	ensembl	74_37	+1	known	silent	c.561	p.L187	0.848	NULL	NULL	-	no_errors	C11orf80	HGNC	ENSG00000173715				97	0	0	85	9	9.57447
RCE1	0	genome.wustl.edu	37	11	66613379	66613379	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	66613379	66613379	G	T	SNP	RCE1	ENST00000309657	human	ensembl	74_37	+1	known	missense	c.803	p.G268V	1.000	pfam_CAAX_protease	pfam_CAAX_protease	-	no_errors	RCE1	HGNC	ENSG00000173653				107	0	0	105	8	7.07965
DCHS1	0	genome.wustl.edu	37	11	6661560	6661560	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	6661560	6661560	G	A	SNP	DCHS1	ENST00000299441	human	ensembl	74_37	-1	known	missense	c.1285	p.R429W	0.844	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	DCHS1	HGNC	ENSG00000166341				15	0	0	9	5	35.7143
PC	0	genome.wustl.edu	37	11	66617874	66617874	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	66617874	66617874	G	A	SNP	PC	ENST00000393958	human	ensembl	74_37	-1	known	silent	c.2535	p.Y845	0.996	pirsf_Pyruv_COase,tigrfam_Pyruv_COase	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_Carboxylase_cons_dom,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_PYR_CT,pfam_Biotin_lipoyl,pfam_Dala_Dala_lig_C,superfamily_PreATP-grasp_dom,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pirsf_Pyruv_COase,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_PYR_CT,pfscan_Biotin_lipoyl,tigrfam_Pyruv_COase	-	no_errors	PC	HGNC	ENSG00000173599				56	0	0	63	15	19.2308
KDM2A	0	genome.wustl.edu	37	11	67017889	67017889	+	Silent	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	67017889	67017889	A	T	SNP	KDM2A	ENST00000529006	human	ensembl	74_37	+1	known	silent	c.2388	p.G796	0.966	NULL	pfam_Znf_CXXC,pfam_F-box_dom,pfam_JmjC_dom,superfamily_Znf_FYVE_PHD,smart_JmjC_dom,smart_Znf_PHD,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	KDM2A	HGNC	ENSG00000173120				55	0	0	58	6	9.375
RPS6KB2	0	genome.wustl.edu	37	11	67201901	67201901	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	67201901	67201901	G	A	SNP	RPS6KB2	ENST00000312629	human	ensembl	74_37	+1	known	silent	c.1101	p.P367	0.010	pfam_Pkinase_C,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase,pfscan_Prot_kinase_dom	-	no_errors	RPS6KB2	HGNC	ENSG00000175634				33	0	0	26	7	21.2121
PITPNM1	0	genome.wustl.edu	37	11	67270088	67270088	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	67270088	67270088	G	A	SNP	PITPNM1	ENST00000356404	human	ensembl	74_37	-1	known	silent	c.180	p.H60	1.000	pfam_PI_transfer	pfam_PI_transfer,pfam_DDHD,pfam_LNS2,superfamily_HAD-like_dom,smart_LNS2,pfscan_DDHD,prints_PI_transfer	-	no_errors	PITPNM1	HGNC	ENSG00000110697				79	0	0	75	17	18.4783
CABP2	0	genome.wustl.edu	37	11	67287411	67287411	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	67287411	67287411	A	G	SNP	CABP2	ENST00000294288	human	ensembl	74_37	-1	known	missense	c.490	p.F164L	1.000	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	CABP2	HGNC	ENSG00000167791				13	0	0	25	4	13.7931
ALDH3B2	0	genome.wustl.edu	37	11	67432984	67432984	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	67432984	67432984	C	T	SNP	ALDH3B2	ENST00000349015	human	ensembl	74_37	-1	known	missense	c.478	p.G160S	0.998	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	-	no_errors	ALDH3B2	HGNC	ENSG00000132746				124	0	0	132	12	8.33333
NDUFS8	0	genome.wustl.edu	37	11	67799623	67799623	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	67799623	67799623	G	A	SNP	NDUFS8	ENST00000313468	human	ensembl	74_37	+1	known	missense	c.5	p.R2H	0.200	NULL	pfam_4Fe4S-bd_dom,tigrfam_NADH_quinone_OxRdtase_chainI	-	no_errors	NDUFS8	HGNC	ENSG00000110717				107	0	0	82	36	30.5085
NDUFS8	0	genome.wustl.edu	37	11	67804031	67804031	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	67804031	67804031	A	G	SNP	NDUFS8	ENST00000313468	human	ensembl	74_37	+1	known	missense	c.604	p.N202D	1.000	NULL	pfam_4Fe4S-bd_dom,tigrfam_NADH_quinone_OxRdtase_chainI	-	no_errors	NDUFS8	HGNC	ENSG00000110717				32	0	0	28	3	9.67742
C11orf24	0	genome.wustl.edu	37	11	68031218	68031218	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	68031218	68031218	C	T	SNP	C11orf24	ENST00000304271	human	ensembl	74_37	-1	known	silent	c.18	p.V6	0.818	NULL	NULL	-	no_errors	C11orf24	HGNC	ENSG00000171067				49	0	0	38	8	17.3913
OR2AG1	0	genome.wustl.edu	37	11	6806618	6806618	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	6806618	6806618	T	C	SNP	OR2AG1	ENST00000307401	human	ensembl	74_37	+1	known	missense	c.350	p.F117S	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR2AG1	HGNC	ENSG00000170803				66	0	0	75	10	11.7647
DEAF1	0	genome.wustl.edu	37	11	687961	687961	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	687961	687961	A	G	SNP	DEAF1	ENST00000382409	human	ensembl	74_37	-1	known	missense	c.614	p.V205A	1.000	pfam_SAND_dom,superfamily_SAND_dom-like,smart_SAND_dom,pfscan_SAND_dom	pfam_SAND_dom,pfam_Znf_MYND,superfamily_SAND_dom-like,smart_SAND_dom,pfscan_Znf_MYND,pfscan_SAND_dom	-	no_errors	DEAF1	HGNC	ENSG00000177030				66	0	0	48	5	9.43396
OR10A2	0	genome.wustl.edu	37	11	6891104	6891104	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	6891104	6891104	C	A	SNP	OR10A2	ENST00000307322	human	ensembl	74_37	+1	known	missense	c.119	p.P40H	0.859	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10A2	HGNC	ENSG00000170790				207	1	0.480769	203	12	5.5814
ANO1	0	genome.wustl.edu	37	11	70007370	70007370	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	70007370	70007370	G	A	SNP	ANO1	ENST00000355303	human	ensembl	74_37	+1	known	missense	c.1682	p.R561Q	1.000	pfam_Anoctamin	pfam_Anoctamin	-	no_errors	ANO1	HGNC	ENSG00000131620				81	0	0	68	19	21.8391
ZNF214	0	genome.wustl.edu	37	11	7021635	7021635	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	7021635	7021635	A	T	SNP	ZNF214	ENST00000278314	human	ensembl	74_37	-1	known	missense	c.1279	p.S427T	0.973	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF214	HGNC	ENSG00000149050				128	0	0	106	14	11.6667
SHANK2	0	genome.wustl.edu	37	11	70507799	70507799	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	70507799	70507799	C	A	SNP	SHANK2	ENST00000449833	human	ensembl	74_37	-1	known	missense	c.74	p.R25L	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,pfam_PDZ,superfamily_PDZ,superfamily_SAM/pointed,smart_PDZ,smart_SAM,pfscan_PDZ,pfscan_SAM	-	no_errors	SHANK2	HGNC	ENSG00000162105				178	1	0.558659	148	10	6.32911
NLRP14	0	genome.wustl.edu	37	11	7081168	7081168	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	7081168	7081168	T	A	SNP	NLRP14	ENST00000299481	human	ensembl	74_37	+1	known	missense	c.2677	p.S893T	0.500	smart_Leu-rich_rpt_RNase_inh_sub-typ	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP14	HGNC	ENSG00000158077				76	0	0	65	4	5.7971
NADSYN1	0	genome.wustl.edu	37	11	71209571	71209571	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	71209571	71209571	T	A	SNP	NADSYN1	ENST00000319023	human	ensembl	74_37	+1	known	missense	c.2067	p.N689K	0.000	NULL	pfam_C-N_Hydrolase,pfam_NAD/GMP_synthase,superfamily_C-N_Hydrolase,pirsf_Gln-dep_NAD_synthase,pfscan_C-N_Hydrolase,tigrfam_NAD_synthase	-	no_errors	NADSYN1	HGNC	ENSG00000172890				133	0	0	91	10	9.90099
KRTAP5-10	0	genome.wustl.edu	37	11	71276712	71276712	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	71276712	71276712	G	A	SNP	KRTAP5-10	ENST00000398531	human	ensembl	74_37	+1	known	missense	c.79	p.G27S	0.796	NULL	NULL	-	no_errors	KRTAP5-10	HGNC	ENSG00000204572				103	0	0	104	18	14.7541
FOLR2	0	genome.wustl.edu	37	11	71932594	71932594	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	71932594	71932594	C	A	SNP	FOLR2	ENST00000298223	human	ensembl	74_37	+1	known	missense	c.556	p.L186I	0.416	pfam_Folate_rcpt-like	pfam_Folate_rcpt-like	-	no_errors	FOLR2	HGNC	ENSG00000165457				146	0	0	144	20	12.1951
INPPL1	0	genome.wustl.edu	37	11	71942175	71942175	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	71942175	71942175	A	G	SNP	INPPL1	ENST00000298229	human	ensembl	74_37	+1	known	missense	c.1439	p.E480G	1.000	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc	pfam_Endo/exonuclease/phosphatase,pfam_SH2,pfam_SAM_2,pfam_SAM_type1,superfamily_Endo/exonuclease/phosphatase,superfamily_SAM/pointed,smart_SH2,smart_IPPc,smart_SAM,pfscan_SAM,pfscan_SH2,prints_SH2	-	no_errors	INPPL1	HGNC	ENSG00000165458				214	0	0	242	22	8.33333
INPPL1	0	genome.wustl.edu	37	11	71942618	71942618	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	71942618	71942618	T	C	SNP	INPPL1	ENST00000298229	human	ensembl	74_37	+1	known	missense	c.1574	p.V525A	1.000	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc	pfam_Endo/exonuclease/phosphatase,pfam_SH2,pfam_SAM_2,pfam_SAM_type1,superfamily_Endo/exonuclease/phosphatase,superfamily_SAM/pointed,smart_SH2,smart_IPPc,smart_SAM,pfscan_SAM,pfscan_SH2,prints_SH2	-	no_errors	INPPL1	HGNC	ENSG00000165458				73	0	0	59	7	10.6061
INPPL1	0	genome.wustl.edu	37	11	71946494	71946494	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	71946494	71946494	C	T	SNP	INPPL1	ENST00000298229	human	ensembl	74_37	+1	known	silent	c.2658	p.Y886	0.995	NULL	pfam_Endo/exonuclease/phosphatase,pfam_SH2,pfam_SAM_2,pfam_SAM_type1,superfamily_Endo/exonuclease/phosphatase,superfamily_SAM/pointed,smart_SH2,smart_IPPc,smart_SAM,pfscan_SAM,pfscan_SH2,prints_SH2	-	no_errors	INPPL1	HGNC	ENSG00000165458				126	0	0	104	32	23.5294
EPS8L2	0	genome.wustl.edu	37	11	722548	722548	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	722548	722548	C	T	SNP	EPS8L2	ENST00000318562	human	ensembl	74_37	+1	known	missense	c.1207	p.R403C	1.000	NULL	pfam_PTB,pfam_SH3_domain,pfam_PTB/PI_dom,pfam_SH3_2,superfamily_SH3_domain,superfamily_SAM/pointed,smart_PTB/PI_dom,smart_SH3_domain,pfscan_PTB/PI_dom,pfscan_SH3_domain	-	no_errors	EPS8L2	HGNC	ENSG00000177106				23	0	0	27	15	35.7143
PDE2A	0	genome.wustl.edu	37	11	72295608	72295608	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	72295608	72295608	C	T	SNP	PDE2A	ENST00000334456	human	ensembl	74_37	-1	known	silent	c.1524	p.K508	1.000	pfam_GAF,smart_GAF	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE2A	HGNC	ENSG00000186642				21	0	0	14	4	22.2222
P4HA3	0	genome.wustl.edu	37	11	74009355	74009355	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	74009355	74009355	C	T	SNP	P4HA3	ENST00000331597	human	ensembl	74_37	-1	known	missense	c.619	p.A207T	1.000	NULL	pfam_Pro_4_hyd_alph_N,pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	P4HA3	HGNC	ENSG00000149380				200	0	0	144	13	8.28025
POLD3	0	genome.wustl.edu	37	11	74315765	74315765	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	74315765	74315765	C	T	SNP	POLD3	ENST00000263681	human	ensembl	74_37	+1	known	nonsense	c.145	p.R49*	1.000	pfam_DNA_polymerase_subunit_Cdc27	pfam_DNA_polymerase_subunit_Cdc27	-	no_errors	POLD3	HGNC	ENSG00000077514				83	0	0	54	12	18.1818
SYT9	0	genome.wustl.edu	37	11	7439228	7439228	+	Silent	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	7439228	7439228	A	T	SNP	SYT9	ENST00000318881	human	ensembl	74_37	+1	known	silent	c.1206	p.R402	0.274	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom,prints_Synaptotagmin,prints_C2_dom	-	no_errors	SYT9	HGNC	ENSG00000170743				83	0	0	59	6	9.23077
CHRDL2	0	genome.wustl.edu	37	11	74421942	74421942	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	74421942	74421942	C	T	SNP	CHRDL2	ENST00000376324	human	ensembl	74_37	-1	known	missense	c.230	p.S77N	1.000	NULL	NULL	-	no_errors	CHRDL2	HGNC	ENSG00000054938				43	0	0	36	4	10
XRRA1	0	genome.wustl.edu	37	11	74570275	74570275	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	74570275	74570275	T	C	SNP	XRRA1	ENST00000340360	human	ensembl	74_37	-1	known	silent	c.1074	p.S358	0.996	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	XRRA1	HGNC	ENSG00000166435				27	0	0	33	3	8.33333
ARRB1	0	genome.wustl.edu	37	11	74993028	74993028	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	74993028	74993028	G	A	SNP	ARRB1	ENST00000393505	human	ensembl	74_37	-1	known	missense	c.392	p.P131L	1.000	pfam_Arrestin-like_N,superfamily_Ig_E-set	pfam_Arrestin-like_N,pfam_Arrestin_C-like,superfamily_Ig_E-set,prints_Arrestin	-	no_errors	ARRB1	HGNC	ENSG00000137486				28	0	0	32	3	8.57143
RPS3	0	genome.wustl.edu	37	11	75115222	75115222	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	75115222	75115222	C	T	SNP	RPS3	ENST00000527446	human	ensembl	74_37	+1	known	missense	c.509	p.T170I	0.998	pfam_Ribosomal_S3_C,superfamily_Ribosomal_S3_C,tigrfam_Ribosomal_S3_euk/arc	pfam_Ribosomal_S3_C,pfam_KH_dom_type_2,superfamily_Ribosomal_S3_C,superfamily_KH_prok-type,pfscan_KH_dom_type_2,tigrfam_Ribosomal_S3_euk/arc	-	no_errors	RPS3	HGNC	ENSG00000149273				65	0	0	45	9	16.6667
SNORD15B	0	genome.wustl.edu	37	11	75115466	75115466	+	RNA	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	75115466	75115466	T	A	SNP	SNORD15B	ENST00000384714	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SNORD15B	HGNC	ENSG00000207445				149	0	0	112	30	21.1268
TALDO1	0	genome.wustl.edu	37	11	755935	755935	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	755935	755935	G	A	SNP	TALDO1	ENST00000319006	human	ensembl	74_37	+1	known	missense	c.154	p.A52T	0.998	pfam_Transaldolase,tigrfam_Transaldolase_1	pfam_Transaldolase,tigrfam_Transaldolase_1	-	no_errors	TALDO1	HGNC	ENSG00000177156				45	0	0	41	6	12.766
UVRAG	0	genome.wustl.edu	37	11	75694518	75694518	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	75694518	75694518	G	A	SNP	UVRAG	ENST00000356136	human	ensembl	74_37	+1	known	missense	c.787	p.A263T	1.000	NULL	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom	-	no_errors	UVRAG	HGNC	ENSG00000198382				49	0	0	57	4	6.55738
PPFIBP2	0	genome.wustl.edu	37	11	7631603	7631603	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	7631603	7631603	G	A	SNP	PPFIBP2	ENST00000299492	human	ensembl	74_37	+1	known	missense	c.568	p.G190S	1.000	NULL	pfam_SAM_2,pfam_SAM_type1,pfam_Integrase_Tn916-type_DNA-bd_N,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	PPFIBP2	HGNC	ENSG00000166387				157	0	0	111	8	6.72269
TSKU	0	genome.wustl.edu	37	11	76507436	76507436	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	76507436	76507436	T	A	SNP	TSKU	ENST00000333090	human	ensembl	74_37	+1	known	missense	c.776	p.L259Q	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	TSKU	HGNC	ENSG00000182704				92	0	0	91	10	9.90099
PPFIBP2	0	genome.wustl.edu	37	11	7672093	7672093	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	7672093	7672093	T	C	SNP	PPFIBP2	ENST00000299492	human	ensembl	74_37	+1	known	missense	c.2144	p.V715A	1.000	pfam_SAM_2,superfamily_SAM/pointed,smart_SAM	pfam_SAM_2,pfam_SAM_type1,pfam_Integrase_Tn916-type_DNA-bd_N,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	PPFIBP2	HGNC	ENSG00000166387				132	0	0	109	14	11.3821
OMP	0	genome.wustl.edu	37	11	76814187	76814187	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	76814187	76814187	A	G	SNP	OMP	ENST00000529803	human	ensembl	74_37	+1	known	missense	c.302	p.D101G	1.000	pfam_Olfactory_marker,superfamily_Olfactory_marker	pfam_Olfactory_marker,superfamily_Olfactory_marker	-	no_errors	OMP	HGNC	ENSG00000254550				30	0	0	22	3	12
CYB5R2	0	genome.wustl.edu	37	11	7686758	7686758	+	Silent	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	7686758	7686758	G	T	SNP	CYB5R2	ENST00000299498	human	ensembl	74_37	-1	known	silent	c.678	p.G226	0.919	pfam_OxRdtase_FAD/NAD-bd,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase	pfam_OxRdtase_FAD-bd_dom,pfam_OxRdtase_FAD/NAD-bd,superfamily_Riboflavin_synthase-like_b-brl,prints_NADH-Cyt_B5_reductase,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase	-	no_errors	CYB5R2	HGNC	ENSG00000166394				39	0	0	32	5	13.5135
CYB5R2	0	genome.wustl.edu	37	11	7693999	7693999	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	7693999	7693999	G	A	SNP	CYB5R2	ENST00000299498	human	ensembl	74_37	-1	known	silent	c.58	p.L20	0.990	pfam_OxRdtase_FAD-bd_dom,superfamily_Riboflavin_synthase-like_b-brl	pfam_OxRdtase_FAD-bd_dom,pfam_OxRdtase_FAD/NAD-bd,superfamily_Riboflavin_synthase-like_b-brl,prints_NADH-Cyt_B5_reductase,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase	-	no_errors	CYB5R2	HGNC	ENSG00000166394				64	0	0	66	8	10.8108
PAK1	0	genome.wustl.edu	37	11	77091002	77091002	+	Silent	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	77091002	77091002	A	C	SNP	PAK1	ENST00000278568	human	ensembl	74_37	-1	known	silent	c.228	p.S76	0.998	pfam_CRIB_dom,smart_CRIB_dom,pfscan_CRIB_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_CRIB_dom,superfamily_Kinase-like_dom,superfamily_WASP_C,smart_CRIB_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRIB_dom,pfscan_Prot_kinase_dom	-	no_errors	PAK1	HGNC	ENSG00000149269				106	0	0	76	7	8.43373
RSF1	0	genome.wustl.edu	37	11	77409545	77409545	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	77409545	77409545	T	G	SNP	RSF1	ENST00000308488	human	ensembl	74_37	-1	known	missense	c.2702	p.N901T	1.000	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	RSF1	HGNC	ENSG00000048649				132	1	0.75188	114	11	8.8
INTS4	0	genome.wustl.edu	37	11	77639459	77639459	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	77639459	77639459	T	C	SNP	INTS4	ENST00000534064	human	ensembl	74_37	-1	known	missense	c.1300	p.T434A	1.000	superfamily_ARM-type_fold	pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	INTS4	HGNC	ENSG00000149262				65	0	0	52	8	13.3333
ALG8	0	genome.wustl.edu	37	11	77817965	77817965	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	77817965	77817965	G	A	SNP	ALG8	ENST00000299626	human	ensembl	74_37	-1	known	missense	c.1066	p.P356S	1.000	pfam_Glyco_trans_ALG6/ALG8	pfam_Glyco_trans_ALG6/ALG8	-	no_errors	ALG8	HGNC	ENSG00000159063				64	0	0	48	5	9.43396
KCTD21	0	genome.wustl.edu	37	11	77885115	77885115	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	77885115	77885115	C	A	SNP	KCTD21	ENST00000340067	human	ensembl	74_37	-1	known	missense	c.486	p.K162N	1.000	NULL	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	-	no_errors	KCTD21	HGNC	ENSG00000188997				104	0	0	91	5	5.20833
KCTD21	0	genome.wustl.edu	37	11	77885584	77885584	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	77885584	77885584	G	A	SNP	KCTD21	ENST00000340067	human	ensembl	74_37	-1	known	missense	c.17	p.T6M	1.000	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	-	no_errors	KCTD21	HGNC	ENSG00000188997				22	0	0	26	5	16.129
USP35	0	genome.wustl.edu	37	11	77907407	77907407	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	77907407	77907407	T	C	SNP	USP35	ENST00000529308	human	ensembl	74_37	+1	known	missense	c.116	p.L39P	1.000	NULL	pfam_Peptidase_C19/C67,superfamily_ARM-type_fold,pfscan_Peptidase_C19/C67	-	no_errors	USP35	HGNC	ENSG00000118369				25	0	0	12	4	25
USP35	0	genome.wustl.edu	37	11	77921303	77921303	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	77921303	77921303	C	A	SNP	USP35	ENST00000529308	human	ensembl	74_37	+1	known	missense	c.2402	p.P801Q	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,superfamily_ARM-type_fold,pfscan_Peptidase_C19/C67	-	no_errors	USP35	HGNC	ENSG00000118369				83	0	0	69	6	8
OR5P2	0	genome.wustl.edu	37	11	7817752	7817752	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	7817752	7817752	C	T	SNP	OR5P2	ENST00000329434	human	ensembl	74_37	-1	known	silent	c.738	p.L246	0.990	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5P2	HGNC	ENSG00000183303				120	0	0	86	21	19.6262
TENM4	0	genome.wustl.edu	37	11	78369545	78369545	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	78369545	78369545	C	T	SNP	TENM4	ENST00000278550	human	ensembl	74_37	-1	known	missense	c.7868	p.G2623E	1.000	NULL	pfam_Ten_N,pfam_EGF_extracell,pfam_YD,superfamily_CarboxyPept-like_regulatory,smart_EG-like_dom,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	TENM4	HGNC	ENSG00000149256				31	0	0	32	7	17.9487
OR5P3	0	genome.wustl.edu	37	11	7846735	7846735	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	7846735	7846735	G	T	SNP	OR5P3	ENST00000328375	human	ensembl	74_37	-1	known	missense	c.785	p.P262H	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5P3	HGNC	ENSG00000182334				83	0	0	61	6	8.95522
RIC3	0	genome.wustl.edu	37	11	8161632	8161632	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	8161632	8161632	T	C	SNP	RIC3	ENST00000309737	human	ensembl	74_37	-1	known	missense	c.233	p.K78R	0.995	NULL	NULL	-	no_errors	RIC3	HGNC	ENSG00000166405				108	0	0	76	5	6.17284
LMO1	0	genome.wustl.edu	37	11	8251944	8251944	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	8251944	8251944	G	A	SNP	LMO1	ENST00000335790	human	ensembl	74_37	-1	known	missense	c.133	p.H45Y	1.000	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	LMO1	HGNC	ENSG00000166407				123	0	0	98	17	14.7826
PCF11	0	genome.wustl.edu	37	11	82878291	82878291	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	82878291	82878291	G	A	SNP	PCF11	ENST00000298281	human	ensembl	74_37	+1	known	missense	c.1942	p.A648T	1.000	NULL	pfam_RNA_pol_II-bd,superfamily_ENTH_VHS,smart_CID_dom	-	no_errors	PCF11	HGNC	ENSG00000165494				121	0	0	94	8	7.84314
PCF11	0	genome.wustl.edu	37	11	82880832	82880832	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	82880832	82880832	T	C	SNP	PCF11	ENST00000298281	human	ensembl	74_37	+1	known	missense	c.3455	p.F1152S	1.000	NULL	pfam_RNA_pol_II-bd,superfamily_ENTH_VHS,smart_CID_dom	-	no_errors	PCF11	HGNC	ENSG00000165494				61	0	0	36	4	10
CCDC90B	0	genome.wustl.edu	37	11	82989855	82989855	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	82989855	82989855	C	A	SNP	CCDC90B	ENST00000529689	human	ensembl	74_37	-1	known	missense	c.238	p.A80S	1.000	pfam_DUF1640	pfam_DUF1640	-	no_errors	CCDC90B	HGNC	ENSG00000137500				101	0	0	71	4	5.33333
CREBZF	0	genome.wustl.edu	37	11	85375106	85375106	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	85375106	85375106	C	T	SNP	CREBZF	ENST00000525639	human	ensembl	74_37	-1	known	missense	c.814	p.A272T	1.000	NULL	pfam_bZIP	-	no_errors	CREBZF	HGNC	ENSG00000137504				142	0	0	155	9	5.4878
SYTL2	0	genome.wustl.edu	37	11	85445705	85445705	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	85445705	85445705	G	T	SNP	SYTL2	ENST00000316356	human	ensembl	74_37	-1	known	missense	c.667	p.P223T	0.000	NULL	pfam_C2_dom,superfamily_C2_dom,superfamily_Znf_FYVE_PHD,smart_C2_dom,pfscan_C2_dom,pfscan_Znf_FYVE-typ	-	no_errors	SYTL2	HGNC	ENSG00000137501				109	0	0	82	9	9.89011
C11orf73	0	genome.wustl.edu	37	11	86017344	86017344	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	86017344	86017344	T	C	SNP	C11orf73	ENST00000278483	human	ensembl	74_37	+1	known	missense	c.88	p.Y30H	1.000	pfam_DUF775	pfam_DUF775	-	no_errors	C11orf73	HGNC	ENSG00000149196				89	0	0	51	8	13.5593
CCDC81	0	genome.wustl.edu	37	11	86106389	86106389	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	86106389	86106389	T	C	SNP	CCDC81	ENST00000445632	human	ensembl	74_37	+1	known	missense	c.569	p.V190A	0.966	NULL	superfamily_IHF-like_DNA-bd_dom	-	no_errors	CCDC81	HGNC	ENSG00000149201				80	0	0	58	7	10.7692
TSPAN4	0	genome.wustl.edu	37	11	866596	866596	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	866596	866596	G	A	SNP	TSPAN4	ENST00000397397	human	ensembl	74_37	+1	known	missense	c.683	p.C228Y	1.000	pfam_Tetraspanin/Peripherin,prints_Tetraspanin	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	TSPAN4	HGNC	ENSG00000214063				26	0	0	21	10	32.2581
FZD4	0	genome.wustl.edu	37	11	86665896	86665896	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	86665896	86665896	G	A	SNP	FZD4	ENST00000531380	human	ensembl	74_37	-1	known	nonsense	c.232	p.Q78*	1.000	pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	FZD4	HGNC	ENSG00000174804				27	0	0	24	5	17.2414
GRM5	0	genome.wustl.edu	37	11	88242507	88242507	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	88242507	88242507	G	A	SNP	GRM5	ENST00000305447	human	ensembl	74_37	-1	known	silent	c.2892	p.G964	0.222	NULL	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_Metabotropic_Glu_rcpt_Homer-bd,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,prints_GPCR_3_mtglu_rcpt_5,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_1,pfscan_GPCR_3_C	-	no_errors	GRM5	HGNC	ENSG00000168959				33	0	0	32	6	15.7895
GRM5	0	genome.wustl.edu	37	11	88780887	88780887	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	88780887	88780887	C	T	SNP	GRM5	ENST00000305447	human	ensembl	74_37	-1	known	missense	c.154	p.V52I	1.000	superfamily_Peripla_BP_I	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_Metabotropic_Glu_rcpt_Homer-bd,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,prints_GPCR_3_mtglu_rcpt_5,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_1,pfscan_GPCR_3_C	-	no_errors	GRM5	HGNC	ENSG00000168959				55	0	0	28	8	22.2222
AKIP1	0	genome.wustl.edu	37	11	8940962	8940962	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	8940962	8940962	A	G	SNP	AKIP1	ENST00000309377	human	ensembl	74_37	+1	known	missense	c.568	p.T190A	0.000	NULL	NULL	-	no_errors	AKIP1	HGNC	ENSG00000166452				133	0	0	104	31	22.963
SCUBE2	0	genome.wustl.edu	37	11	9077338	9077338	+	Splice_Site	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	9077338	9077338	A	G	SNP	SCUBE2	ENST00000457346	human	ensembl	74_37	-1	known	splice_site	c.1207+2	e10+2	1.000	-	-	-	no_errors	SCUBE2	HGNC	ENSG00000175356				118	0	0	113	14	11.0236
FAT3	0	genome.wustl.edu	37	11	92087436	92087436	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	92087436	92087436	A	G	SNP	FAT3	ENST00000298047	human	ensembl	74_37	+1	known	missense	c.2158	p.R720G	0.999	superfamily_Cadherin-like	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323				297	0	0	188	13	6.46766
FAT3	0	genome.wustl.edu	37	11	92087574	92087574	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	92087574	92087574	T	A	SNP	FAT3	ENST00000298047	human	ensembl	74_37	+1	known	missense	c.2296	p.S766T	0.948	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323				218	0	0	158	17	9.71429
FAT3	0	genome.wustl.edu	37	11	92531257	92531257	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	92531257	92531257	T	A	SNP	FAT3	ENST00000298047	human	ensembl	74_37	+1	known	missense	c.5078	p.I1693N	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323				137	0	0	107	6	5.30973
FAT3	0	genome.wustl.edu	37	11	92534472	92534472	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	92534472	92534472	A	T	SNP	FAT3	ENST00000298047	human	ensembl	74_37	+1	known	missense	c.8293	p.I2765F	0.508	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323				59	0	0	54	7	11.4754
FAT3	0	genome.wustl.edu	37	11	92568120	92568120	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	92568120	92568120	C	A	SNP	FAT3	ENST00000298047	human	ensembl	74_37	+1	known	missense	c.9956	p.P3319Q	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323				30	0	0	23	3	11.5385
FAT3	0	genome.wustl.edu	37	11	92568182	92568182	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	92568182	92568182	A	G	SNP	FAT3	ENST00000298047	human	ensembl	74_37	+1	known	missense	c.10018	p.K3340E	0.001	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323				46	0	0	23	3	11.5385
FAT3	0	genome.wustl.edu	37	11	92616316	92616316	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	92616316	92616316	G	A	SNP	FAT3	ENST00000298047	human	ensembl	74_37	+1	known	missense	c.12694	p.V4232M	1.000	NULL	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323				123	0	0	153	15	8.92857
MED17	0	genome.wustl.edu	37	11	93545200	93545200	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	93545200	93545200	T	C	SNP	MED17	ENST00000251871	human	ensembl	74_37	+1	known	silent	c.1926	p.L642	0.872	NULL	pfam_Mediator_Med17	-	no_errors	MED17	HGNC	ENSG00000042429				132	0	0	93	7	7
FOLR4	0	genome.wustl.edu	37	11	94038882	94038882	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	94038882	94038882	G	C	SNP	FOLR4	ENST00000440961	human	ensembl	74_37	+1	novel	missense	c.80	p.C27S	1.000	pfam_Folate_rcpt-like	pfam_Folate_rcpt-like	-	no_errors	FOLR4	HGNC	ENSG00000183560				79	0	0	75	4	5.06329
GPR83	0	genome.wustl.edu	37	11	94134373	94134373	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	94134373	94134373	A	G	SNP	GPR83	ENST00000243673	human	ensembl	74_37	-1	known	missense	c.41	p.V14A	0.000	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	GPR83	HGNC	ENSG00000123901				46	0	0	35	4	10.2564
MRE11A	0	genome.wustl.edu	37	11	94200987	94200987	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	94200987	94200987	G	A	SNP	MRE11A	ENST00000323929	human	ensembl	74_37	-1	known	nonsense	c.1090	p.R364*	0.995	pfam_Mre11_DNA-bd,pirsf_DNA_repair_Mre11,tigrfam_DNA_repair_Mre11	pfam_Mre11_DNA-bd,pfam_PEstase_dom,pirsf_DNA_repair_Mre11,tigrfam_DNA_repair_Mre11	-	no_errors	MRE11A	HGNC	ENSG00000020922				131	0	0	72	25	25.7732
MTMR2	0	genome.wustl.edu	37	11	95578206	95578206	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	95578206	95578206	G	A	SNP	MTMR2	ENST00000346299	human	ensembl	74_37	-1	known	missense	c.1297	p.L433F	1.000	smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase	pfam_Myotubularin-like_Pase_dom,pfam_GRAM,smart_GRAM,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase	-	no_errors	MTMR2	HGNC	ENSG00000087053				93	0	0	73	5	6.41026
MTMR2	0	genome.wustl.edu	37	11	95578262	95578262	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	95578262	95578262	A	G	SNP	MTMR2	ENST00000346299	human	ensembl	74_37	-1	known	missense	c.1241	p.V414A	1.000	smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase	pfam_Myotubularin-like_Pase_dom,pfam_GRAM,smart_GRAM,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase	-	no_errors	MTMR2	HGNC	ENSG00000087053				78	0	0	75	8	9.63855
MAML2	0	genome.wustl.edu	37	11	95724805	95724805	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	95724805	95724805	T	C	SNP	MAML2	ENST00000524717	human	ensembl	74_37	-1	known	missense	c.2222	p.Y741C	1.000	NULL	pfam_Neuroggenic_mastermind-like_N	-	no_errors	MAML2	HGNC	ENSG00000184384				142	0	0	119	10	7.75194
SBF2	0	genome.wustl.edu	37	11	9879811	9879811	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	9879811	9879811	C	A	SNP	SBF2	ENST00000256190	human	ensembl	74_37	-1	known	missense	c.2062	p.A688S	0.998	pfam_SBF2	pfam_SBF2,pfam_DENN_dom,pfam_uDENN_dom,pfam_Myotubularin-like_Pase_dom,pfam_dDENN_dom,pfam_Pleckstrin_homology,pfam_GRAM,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,smart_GRAM,smart_Pleckstrin_homology,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_Pleckstrin_homology	-	no_errors	SBF2	HGNC	ENSG00000133812				188	1	0.529101	165	13	7.30337
AP2A2	0	genome.wustl.edu	37	11	988613	988613	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	988613	988613	G	A	SNP	AP2A2	ENST00000332231	human	ensembl	74_37	+1	known	missense	c.1196	p.R399H	1.000	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP2_complex_asu	pfam_Clathrin/coatomer_adapt-like_N,pfam_Clathrin_a-adaptin_app_sub_C,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ARM-type_fold,superfamily_Coatomer/calthrin_app_sub_C,superfamily_Coatomer/clathrin_app_Ig-like,smart_Clathrin_a/b/g-adaptin_app_Ig,pirsf_AP2_complex_asu	-	no_errors	AP2A2	HGNC	ENSG00000183020				129	0	0	143	12	7.74194
SBF2	0	genome.wustl.edu	37	11	9989942	9989942	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	9989942	9989942	G	C	SNP	SBF2	ENST00000256190	human	ensembl	74_37	-1	known	missense	c.1546	p.P516A	1.000	NULL	pfam_SBF2,pfam_DENN_dom,pfam_uDENN_dom,pfam_Myotubularin-like_Pase_dom,pfam_dDENN_dom,pfam_Pleckstrin_homology,pfam_GRAM,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,smart_GRAM,smart_Pleckstrin_homology,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_Pleckstrin_homology	-	no_errors	SBF2	HGNC	ENSG00000133812				145	0	0	103	10	8.84956
WNK1	0	genome.wustl.edu	37	12	1003798	1003798	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	1003798	1003798	T	C	SNP	WNK1	ENST00000530271	human	ensembl	74_37	+1	known	silent	c.7074	p.F2358	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	WNK1	HGNC	ENSG00000060237				121	0	0	72	21	22.5806
GOLGA2P5	0	genome.wustl.edu	37	12	100551023	100551023	+	RNA	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	100551023	100551023	C	T	SNP	GOLGA2P5	ENST00000397112	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	GOLGA2B	Clone_based_vega_gene	ENSG00000238105				42	0	0	48	5	9.43396
WNK1	0	genome.wustl.edu	37	12	1006677	1006677	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	1006677	1006677	G	A	SNP	WNK1	ENST00000530271	human	ensembl	74_37	+1	known	missense	c.7772	p.R2591H	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	WNK1	HGNC	ENSG00000060237				78	0	0	51	7	12.069
SCYL2	0	genome.wustl.edu	37	12	100729611	100729611	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	100729611	100729611	A	G	SNP	SCYL2	ENST00000360820	human	ensembl	74_37	+1	known	missense	c.1952	p.N651S	0.990	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	-	no_errors	SCYL2	HGNC	ENSG00000136021				226	0	0	128	11	7.91367
SLC17A8	0	genome.wustl.edu	37	12	100813785	100813785	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	100813785	100813785	G	A	SNP	SLC17A8	ENST00000323346	human	ensembl	74_37	+1	known	missense	c.1618	p.A540T	0.000	NULL	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC17A8	HGNC	ENSG00000179520				34	0	0	35	6	14.6341
ANO4	0	genome.wustl.edu	37	12	101336299	101336299	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	101336299	101336299	C	A	SNP	ANO4	ENST00000392977	human	ensembl	74_37	+1	known	missense	c.442	p.Q148K	1.000	NULL	pfam_Anoctamin	-	no_errors	ANO4	HGNC	ENSG00000151572				177	0	0	111	24	17.7778
SLC5A8	0	genome.wustl.edu	37	12	101603516	101603516	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	101603516	101603516	G	A	SNP	SLC5A8	ENST00000536262	human	ensembl	74_37	-1	known	silent	c.111	p.G37	1.000	pfscan_Na/solute_symporter	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A8	HGNC	ENSG00000256870				37	0	0	33	12	26.6667
CLEC12B	0	genome.wustl.edu	37	12	10163385	10163385	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	10163385	10163385	A	G	SNP	CLEC12B	ENST00000338896	human	ensembl	74_37	+1	known	silent	c.27	p.T9	0.914	NULL	pfam_C-type_lectin,pfam_Ly49,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	CLEC12B	HGNC	ENSG00000256660				47	0	0	35	8	18.6047
UTP20	0	genome.wustl.edu	37	12	101693535	101693535	+	Silent	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	101693535	101693535	T	A	SNP	UTP20	ENST00000261637	human	ensembl	74_37	+1	known	silent	c.1506	p.S502	0.002	superfamily_ARM-type_fold	pfam_DRIM,superfamily_ARM-type_fold	-	no_errors	UTP20	HGNC	ENSG00000120800				97	0	0	85	7	7.6087
UTP20	0	genome.wustl.edu	37	12	101713323	101713323	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	101713323	101713323	G	T	SNP	UTP20	ENST00000261637	human	ensembl	74_37	+1	known	missense	c.2739	p.K913N	1.000	superfamily_ARM-type_fold	pfam_DRIM,superfamily_ARM-type_fold	-	no_errors	UTP20	HGNC	ENSG00000120800				104	0	0	52	6	10.3448
UTP20	0	genome.wustl.edu	37	12	101773254	101773254	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	101773254	101773254	A	G	SNP	UTP20	ENST00000261637	human	ensembl	74_37	+1	known	missense	c.7502	p.Q2501R	0.000	superfamily_ARM-type_fold	pfam_DRIM,superfamily_ARM-type_fold	-	no_errors	UTP20	HGNC	ENSG00000120800				107	0	0	80	9	10.1124
CHPT1	0	genome.wustl.edu	37	12	102108321	102108321	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	102108321	102108321	G	A	SNP	CHPT1	ENST00000229266	human	ensembl	74_37	+1	known	missense	c.461	p.G154E	1.000	pfam_CDP-OH_P_trans,pirsf_CHOPT	pfam_CDP-OH_P_trans,pirsf_CHOPT	-	no_errors	CHPT1	HGNC	ENSG00000111666				104	0	0	54	12	18.1818
CHPT1	0	genome.wustl.edu	37	12	102110522	102110522	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	102110522	102110522	A	T	SNP	CHPT1	ENST00000229266	human	ensembl	74_37	+1	known	missense	c.580	p.I194F	1.000	pirsf_CHOPT	pfam_CDP-OH_P_trans,pirsf_CHOPT	-	no_errors	CHPT1	HGNC	ENSG00000111666				78	0	0	59	5	7.8125
CLEC9A	0	genome.wustl.edu	37	12	10213735	10213735	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	10213735	10213735	T	C	SNP	CLEC9A	ENST00000355819	human	ensembl	74_37	+1	putative	missense	c.182	p.V61A	0.431	NULL	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	CLEC9A	HGNC	ENSG00000197992				59	0	0	39	3	7.14286
GNPTAB	0	genome.wustl.edu	37	12	102151087	102151087	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	102151087	102151087	A	C	SNP	GNPTAB	ENST00000299314	human	ensembl	74_37	-1	known	missense	c.3337	p.F1113V	1.000	NULL	pfam_DMAP1-bd,pfam_Notch_dom,pfam_DUF3184,superfamily_Notch_dom,smart_Notch_dom,pfscan_EF_hand_dom,pfscan_Notch_dom	-	no_errors	GNPTAB	HGNC	ENSG00000111670				58	0	0	47	6	11.3208
CCDC53	0	genome.wustl.edu	37	12	102439888	102439888	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	102439888	102439888	C	T	SNP	CCDC53	ENST00000240079	human	ensembl	74_37	-1	known	missense	c.160	p.D54N	1.000	pfam_WASH_CCDC53	pfam_WASH_CCDC53	-	no_errors	CCDC53	HGNC	ENSG00000120860				42	0	0	25	3	10.7143
CLEC7A	0	genome.wustl.edu	37	12	10278009	10278009	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	10278009	10278009	A	G	SNP	CLEC7A	ENST00000304084	human	ensembl	74_37	-1	known	missense	c.379	p.Y127H	0.000	superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_AntifreezeII	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_AntifreezeII	-	no_errors	CLEC7A	HGNC	ENSG00000172243				63	0	0	47	6	11.3208
RAD52	0	genome.wustl.edu	37	12	1038990	1038990	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	1038990	1038990	G	A	SNP	RAD52	ENST00000358495	human	ensembl	74_37	-1	known	silent	c.343	p.L115	0.939	pfam_Rad52_Rad22,tigrfam_DNA_recomb/repair_Rad52	pfam_Rad52_Rad22,tigrfam_DNA_recomb/repair_Rad52	-	no_errors	RAD52	HGNC	ENSG00000002016				252	0	0	240	21	8.04598
NT5DC3	0	genome.wustl.edu	37	12	104179252	104179252	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	104179252	104179252	T	A	SNP	NT5DC3	ENST00000392876	human	ensembl	74_37	-1	known	missense	c.1190	p.D397V	1.000	pfam_HAD-SF_hydro_IG_5-nucl,superfamily_HAD-like_dom,pirsf_Pur_nucleotidase,tigrfam_HAD-SF_hydro_IG_5-nucl	pfam_HAD-SF_hydro_IG_5-nucl,superfamily_HAD-like_dom,pirsf_Pur_nucleotidase,tigrfam_HAD-SF_hydro_IG_5-nucl	-	no_errors	NT5DC3	HGNC	ENSG00000111696				80	0	0	50	13	20.6349
TDG	0	genome.wustl.edu	37	12	104373771	104373771	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	104373771	104373771	G	A	SNP	TDG	ENST00000392872	human	ensembl	74_37	+1	known	missense	c.329	p.R110H	1.000	tigrfam_Thymine-DNA_glycosylase	pfam_Uracil-DNA_glycosylase-like,superfamily_Uracil-DNA_glycosylase-like,tigrfam_Thymine-DNA_glycosylase	-	no_errors	TDG	HGNC	ENSG00000139372				90	0	0	84	5	5.61798
TXNRD1	0	genome.wustl.edu	37	12	104682799	104682799	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	104682799	104682799	G	A	SNP	TXNRD1	ENST00000429002	human	ensembl	74_37	+1	known	missense	c.395	p.G132D	1.000	superfamily_Thioredoxin-like_fold	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_Pyr_nucl-diS_OxRdtase_dimer,pfam_Pyr_OxRdtase_NAD-bd_dom,pfam_FAD_bind_dom,pfam_Glutaredoxin,superfamily_FAD/NAD-linked_Rdtase_dimer,superfamily_Thioredoxin-like_fold,prints_FAD_pyr_nucl-diS_OxRdtase,prints_Hg_reductase,prints_Pyridine_nuc-diS_OxRdtase_2,tigrfam_Thioredoxin/glutathione_Rdtase	-	no_errors	TXNRD1	HGNC	ENSG00000198431				122	0	0	113	30	20.979
EID3	0	genome.wustl.edu	37	12	104697736	104697736	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	104697736	104697736	G	T	SNP	EID3	ENST00000527879	human	ensembl	74_37	+1	known	missense	c.24	p.R8S	0.004	NULL	pfam_Nse4_C	-	no_errors	EID3	HGNC	ENSG00000255150				22	0	0	15	3	16.6667
TXNRD1	0	genome.wustl.edu	37	12	104705127	104705127	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	104705127	104705127	C	T	SNP	TXNRD1	ENST00000429002	human	ensembl	74_37	+1	known	silent	c.474	p.P158	0.000	NULL	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_Pyr_nucl-diS_OxRdtase_dimer,pfam_Pyr_OxRdtase_NAD-bd_dom,pfam_FAD_bind_dom,pfam_Glutaredoxin,superfamily_FAD/NAD-linked_Rdtase_dimer,superfamily_Thioredoxin-like_fold,prints_FAD_pyr_nucl-diS_OxRdtase,prints_Hg_reductase,prints_Pyridine_nuc-diS_OxRdtase_2,tigrfam_Thioredoxin/glutathione_Rdtase	-	no_errors	TXNRD1	HGNC	ENSG00000198431				39	0	0	29	2	6.45161
CHST11	0	genome.wustl.edu	37	12	105151226	105151226	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	105151226	105151226	T	A	SNP	CHST11	ENST00000303694	human	ensembl	74_37	+1	known	missense	c.704	p.V235D	1.000	pfam_Sulfotransferase	pfam_Sulfotransferase	-	no_errors	CHST11	HGNC	ENSG00000171310				58	0	0	63	7	10
SLC41A2	0	genome.wustl.edu	37	12	105199107	105199107	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	105199107	105199107	G	A	SNP	SLC41A2	ENST00000258538	human	ensembl	74_37	-1	known	silent	c.1545	p.T515	1.000	pfam_SLC41_membr_dom	pfam_SLC41_membr_dom	-	no_errors	SLC41A2	HGNC	ENSG00000136052				159	0	0	111	10	8.26446
CKAP4	0	genome.wustl.edu	37	12	106632882	106632882	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	106632882	106632882	C	T	SNP	CKAP4	ENST00000378026	human	ensembl	74_37	-1	known	missense	c.1729	p.A577T	0.185	NULL	superfamily_Tscrpt_elong_fac_GreA/B_N,superfamily_STAT_TF_coiled-coil	-	no_errors	CKAP4	HGNC	ENSG00000136026				251	0	0	195	18	8.4507
CKAP4	0	genome.wustl.edu	37	12	106632988	106632988	+	Silent	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	106632988	106632988	G	T	SNP	CKAP4	ENST00000378026	human	ensembl	74_37	-1	known	silent	c.1623	p.A541	0.999	superfamily_STAT_TF_coiled-coil	superfamily_Tscrpt_elong_fac_GreA/B_N,superfamily_STAT_TF_coiled-coil	-	no_errors	CKAP4	HGNC	ENSG00000136026				141	0	0	107	9	7.75862
CKAP4	0	genome.wustl.edu	37	12	106633214	106633214	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	106633214	106633214	T	A	SNP	CKAP4	ENST00000378026	human	ensembl	74_37	-1	known	missense	c.1397	p.D466V	0.001	NULL	superfamily_Tscrpt_elong_fac_GreA/B_N,superfamily_STAT_TF_coiled-coil	-	no_errors	CKAP4	HGNC	ENSG00000136026				64	0	0	53	8	13.1148
TCP11L2	0	genome.wustl.edu	37	12	106729566	106729566	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	106729566	106729566	C	G	SNP	TCP11L2	ENST00000299045	human	ensembl	74_37	+1	known	missense	c.922	p.L308V	0.995	pfam_Tcp11	pfam_Tcp11	-	no_errors	TCP11L2	HGNC	ENSG00000166046				85	0	0	55	21	27.6316
POLR3B	0	genome.wustl.edu	37	12	106821127	106821127	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	106821127	106821127	T	C	SNP	POLR3B	ENST00000228347	human	ensembl	74_37	+1	known	silent	c.1254	p.A418	1.000	pfam_RNA_pol_bsu_protrusion	pfam_DNA-dir_RNA_pol_su2_6,pfam_RNA_pol_bsu_protrusion,pfam_RNA_pol_Rpb2_7,pfam_RNA_pol_Rpb2_2,pfam_RNA_pol_Rpb2_3,pfam_RNA_pol_Rpb2_4,pfam_RNA_pol_Rpb2_5	-	no_errors	POLR3B	HGNC	ENSG00000013503				123	0	0	90	10	10
RFX4	0	genome.wustl.edu	37	12	107103144	107103144	+	Silent	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	107103144	107103144	G	T	SNP	RFX4	ENST00000357881	human	ensembl	74_37	+1	known	silent	c.897	p.L299	1.000	NULL	pfam_DNA-bd_RFX	-	no_errors	RFX4	HGNC	ENSG00000111783				60	0	0	40	10	20
RFX4	0	genome.wustl.edu	37	12	107155091	107155091	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	107155091	107155091	C	T	SNP	RFX4	ENST00000357881	human	ensembl	74_37	+1	known	silent	c.2079	p.C693	1.000	NULL	pfam_DNA-bd_RFX	-	no_errors	RFX4	HGNC	ENSG00000111783				106	0	0	124	9	6.76692
CRY1	0	genome.wustl.edu	37	12	107415864	107415864	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	107415864	107415864	T	C	SNP	CRY1	ENST00000008527	human	ensembl	74_37	-1	known	missense	c.265	p.K89E	1.000	pfam_DNA_photolyase_N,superfamily_DNA_photolyase_N	pfam_Photolyase_FAD-bd/Cryptochr_C,pfam_DNA_photolyase_N,superfamily_Photolyase_FAD-bd/Cryptochr_C,superfamily_DNA_photolyase_N	-	no_errors	CRY1	HGNC	ENSG00000008405				247	0	0	147	13	8.125
STYK1	0	genome.wustl.edu	37	12	10777265	10777265	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	10777265	10777265	C	T	SNP	STYK1	ENST00000075503	human	ensembl	74_37	-1	known	missense	c.911	p.S304N	0.771	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	STYK1	HGNC	ENSG00000060140				163	0	0	122	8	6.15385
BTBD11	0	genome.wustl.edu	37	12	108011113	108011113	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	108011113	108011113	G	A	SNP	BTBD11	ENST00000280758	human	ensembl	74_37	+1	known	missense	c.2131	p.G711S	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_BTB_POZ,superfamily_BTB/POZ_fold,superfamily_Ankyrin_rpt-contain_dom,superfamily_Histone-fold,smart_Ankyrin_rpt,smart_BTB/POZ-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_BTB/POZ-like	-	no_errors	BTBD11	HGNC	ENSG00000151136				160	0	0	134	22	14.1026
FICD	0	genome.wustl.edu	37	12	108912565	108912565	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	108912565	108912565	A	G	SNP	FICD	ENST00000552695	human	ensembl	74_37	+1	known	silent	c.690	p.T230	0.868	NULL	pfam_Fido,superfamily_Fido,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	FICD	HGNC	ENSG00000198855				43	0	0	46	5	9.80392
CORO1C	0	genome.wustl.edu	37	12	109046095	109046095	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	109046095	109046095	A	G	SNP	CORO1C	ENST00000420959	human	ensembl	74_37	-1	known	silent	c.1113	p.G371	0.013	pfam_DUF1900	pfam_DUF1900,pfam_DUF1899,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CORO1C	HGNC	ENSG00000110880				193	0	0	159	9	5.35714
SSH1	0	genome.wustl.edu	37	12	109182581	109182581	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	109182581	109182581	G	A	SNP	SSH1	ENST00000326495	human	ensembl	74_37	-1	known	missense	c.2333	p.S778L	0.000	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_DEK_C,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	SSH1	HGNC	ENSG00000084112				139	0	0	135	11	7.53425
USP30	0	genome.wustl.edu	37	12	109519161	109519161	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	109519161	109519161	T	C	SNP	USP30	ENST00000257548	human	ensembl	74_37	+1	known	missense	c.743	p.F248S	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP30	HGNC	ENSG00000135093				190	0	0	133	13	8.90411
ACACB	0	genome.wustl.edu	37	12	109625968	109625968	+	Splice_Site	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	109625968	109625968	G	A	SNP	ACACB	ENST00000338432	human	ensembl	74_37	+1	known	splice_site	c.2144+1	e12+1	1.000	-	-	-	no_errors	ACACB	HGNC	ENSG00000076555				59	0	0	48	10	17.2414
MYO1H	0	genome.wustl.edu	37	12	109845668	109845668	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	109845668	109845668	C	T	SNP	MYO1H	ENST00000431443	human	ensembl	74_37	+1	known	nonsense	c.1057	p.R353*	0.962	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYO1H	HGNC	ENSG00000174527				86	0	0	52	17	24.6377
UBE3B	0	genome.wustl.edu	37	12	109945425	109945425	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	109945425	109945425	G	A	SNP	UBE3B	ENST00000342494	human	ensembl	74_37	+1	known	missense	c.1507	p.G503R	1.000	NULL	pfam_HECT,pfam_IQ_motif_EF-hand-BS,superfamily_HECT,superfamily_P-loop_NTPase,smart_IQ_motif_EF-hand-BS,smart_HECT,pfscan_HECT,pfscan_IQ_motif_EF-hand-BS	-	no_errors	UBE3B	HGNC	ENSG00000151148				145	0	0	99	35	26.1194
GIT2	0	genome.wustl.edu	37	12	110427530	110427530	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	110427530	110427530	A	G	SNP	GIT2	ENST00000355312	human	ensembl	74_37	-1	known	silent	c.264	p.S88	0.528	pfam_ArfGAP,superfamily_Ankyrin_rpt-contain_dom,smart_ArfGAP,pfscan_ArfGAP	pfam_GIT1_C,pfam_GIT_SHD,pfam_ArfGAP,superfamily_Ankyrin_rpt-contain_dom,smart_ArfGAP,smart_Ankyrin_rpt,smart_GIT_SHD,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	GIT2	HGNC	ENSG00000139436				104	0	0	83	8	8.79121
ANKRD13A	0	genome.wustl.edu	37	12	110456152	110456152	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	110456152	110456152	C	T	SNP	ANKRD13A	ENST00000261739	human	ensembl	74_37	+1	known	missense	c.403	p.P135S	1.000	NULL	pfam_ANKRD13,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Ubiquitin-int_motif,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Ubiquitin-int_motif	-	no_errors	ANKRD13A	HGNC	ENSG00000076513				85	0	0	42	10	19.2308
TAS2R13	0	genome.wustl.edu	37	12	11061110	11061110	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	11061110	11061110	T	C	SNP	TAS2R13	ENST00000390677	human	ensembl	74_37	-1	known	missense	c.788	p.Y263C	0.000	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R13	HGNC	ENSG00000212128				56	0	0	49	5	9.25926
HVCN1	0	genome.wustl.edu	37	12	111089064	111089064	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	111089064	111089064	G	A	SNP	HVCN1	ENST00000242607	human	ensembl	74_37	-1	known	silent	c.601	p.L201	0.977	pfam_Ion_trans_dom	pfam_Ion_trans_dom	-	no_errors	HVCN1	HGNC	ENSG00000122986				50	0	0	47	7	12.963
CCDC63	0	genome.wustl.edu	37	12	111317857	111317857	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	111317857	111317857	G	A	SNP	CCDC63	ENST00000308208	human	ensembl	74_37	+1	known	missense	c.637	p.A213T	0.997	NULL	NULL	-	no_errors	CCDC63	HGNC	ENSG00000173093				184	0	0	125	21	14.3836
HECTD4	0	genome.wustl.edu	37	12	112707608	112707608	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	112707608	112707608	C	T	SNP	HECTD4	ENST00000377560	human	ensembl	74_37	-1	known	missense	c.1675	p.D559N	1.000	NULL	pfam_HECT,superfamily_HECT,superfamily_ConA-like_lec_gl_sf,smart_HECT,pfscan_HECT	-	no_errors	HECTD4	HGNC	ENSG00000173064				58	0	0	46	4	8
HECTD4	0	genome.wustl.edu	37	12	112708191	112708191	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	112708191	112708191	A	T	SNP	HECTD4	ENST00000377560	human	ensembl	74_37	-1	known	missense	c.1469	p.L490H	1.000	NULL	pfam_HECT,superfamily_HECT,superfamily_ConA-like_lec_gl_sf,smart_HECT,pfscan_HECT	-	no_errors	HECTD4	HGNC	ENSG00000173064				370	0	0	291	28	8.77743
RPH3A	0	genome.wustl.edu	37	12	113307841	113307841	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	113307841	113307841	G	T	SNP	RPH3A	ENST00000389385	human	ensembl	74_37	+1	known	missense	c.793	p.A265S	0.998	NULL	pfam_C2_dom,pfam_Znf_FYVE-typ,superfamily_C2_dom,superfamily_Znf_FYVE_PHD,smart_C2_dom,pfscan_C2_dom,pfscan_Znf_FYVE-typ,pfscan_Znf_FYVE-rel,prints_Synaptotagmin,prints_C2_dom	-	no_errors	RPH3A	HGNC	ENSG00000089169				36	0	0	31	7	18.4211
OAS3	0	genome.wustl.edu	37	12	113379524	113379524	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	113379524	113379524	G	A	SNP	OAS3	ENST00000228928	human	ensembl	74_37	+1	known	nonsense	c.327	p.W109*	0.000	NULL	pfam_2-5-oligoAdlate_synth_1_dom2/C,pfam_Nucleotidyltransferase,pfscan_2-5-oligoadenylate_synth_N	-	no_errors	OAS3	HGNC	ENSG00000111331				91	0	0	92	12	11.5385
DTX1	0	genome.wustl.edu	37	12	113496081	113496081	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	113496081	113496081	G	A	SNP	DTX1	ENST00000257600	human	ensembl	74_37	+1	known	nonsense	c.84	p.W28*	1.000	pfam_WWE-dom,smart_WWE-dom_subgr,pfscan_WWE-dom	pfam_WWE-dom,smart_WWE-dom_subgr,smart_Znf_RING,pfscan_WWE-dom,pfscan_Znf_RING	-	no_errors	DTX1	HGNC	ENSG00000135144				44	0	0	45	6	11.7647
DDX54	0	genome.wustl.edu	37	12	113603808	113603808	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	113603808	113603808	G	A	SNP	DDX54	ENST00000314045	human	ensembl	74_37	-1	known	missense	c.1444	p.R482W	1.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_DBP10CT,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX54	HGNC	ENSG00000123064				39	0	0	24	5	17.2414
C12orf52	0	genome.wustl.edu	37	12	113629143	113629143	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	113629143	113629143	G	A	SNP	C12orf52	ENST00000548278	human	ensembl	74_37	+1	known	missense	c.331	p.D111N	0.994	NULL	NULL	-	no_errors	C12orf52	HGNC	ENSG00000139405				68	0	0	58	7	10.7692
IQCD	0	genome.wustl.edu	37	12	113633490	113633490	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	113633490	113633490	A	G	SNP	IQCD	ENST00000416617	human	ensembl	74_37	-1	known	missense	c.1240	p.Y414H	1.000	pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	-	no_errors	IQCD	HGNC	ENSG00000166578				104	1	0.952381	94	11	10.4762
SDSL	0	genome.wustl.edu	37	12	113874657	113874657	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	113874657	113874657	T	C	SNP	SDSL	ENST00000345635	human	ensembl	74_37	+1	known	missense	c.773	p.V258A	0.800	pfam_Trp_syn_b_sub_like_PLP_eny_SF,superfamily_Trp_syn_b_sub_like_PLP_eny_SF	pfam_Trp_syn_b_sub_like_PLP_eny_SF,superfamily_Trp_syn_b_sub_like_PLP_eny_SF	-	no_errors	SDSL	HGNC	ENSG00000139410				47	0	0	48	3	5.88235
LHX5	0	genome.wustl.edu	37	12	113906051	113906051	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	113906051	113906051	T	C	SNP	LHX5	ENST00000261731	human	ensembl	74_37	-1	known	missense	c.556	p.T186A	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Znf_LIM,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeobox_dom,pfscan_Znf_LIM,pfscan_Homeobox_dom	-	no_errors	LHX5	HGNC	ENSG00000089116				41	0	0	47	4	7.84314
RBM19	0	genome.wustl.edu	37	12	114364873	114364873	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	114364873	114364873	C	A	SNP	RBM19	ENST00000261741	human	ensembl	74_37	-1	known	nonsense	c.2230	p.E744*	1.000	pfam_RRM_dom,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,smart_RRM_dom_euk,pfscan_RRM_dom	-	no_errors	RBM19	HGNC	ENSG00000122965				68	0	0	68	6	8.10811
RBM19	0	genome.wustl.edu	37	12	114397977	114397977	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	114397977	114397977	A	G	SNP	RBM19	ENST00000261741	human	ensembl	74_37	-1	known	missense	c.226	p.F76L	1.000	pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,smart_RRM_dom_euk,pfscan_RRM_dom	-	no_errors	RBM19	HGNC	ENSG00000122965				45	0	0	45	5	10
MED13L	0	genome.wustl.edu	37	12	116446399	116446399	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	116446399	116446399	G	T	SNP	MED13L	ENST00000281928	human	ensembl	74_37	-1	known	missense	c.1819	p.P607T	1.000	NULL	pfam_Mediator_Med13,pfam_Mediator_Med13_N_met/fun	-	no_errors	MED13L	HGNC	ENSG00000123066				51	0	0	41	4	8.88889
FBXW8	0	genome.wustl.edu	37	12	117365830	117365830	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	117365830	117365830	T	C	SNP	FBXW8	ENST00000309909	human	ensembl	74_37	+1	known	silent	c.321	p.N107	1.000	superfamily_F-box_dom	pfam_WD40_repeat,pfam_F-box_dom,superfamily_Quinonprotein_ADH-like_supfam,superfamily_F-box_dom,smart_F-box_dom,smart_WD40_repeat,pfscan_F-box_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	FBXW8	HGNC	ENSG00000174989				88	0	0	53	4	7.01754
FBXO21	0	genome.wustl.edu	37	12	117615411	117615411	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	117615411	117615411	A	T	SNP	FBXO21	ENST00000330622	human	ensembl	74_37	-1	known	missense	c.506	p.I169N	1.000	superfamily_F-box_dom	pfam_Hemimethylated_DNA-bd_dom,superfamily_Hemimethylated_DNA-bd_dom,superfamily_F-box_dom,tigrfam_Hemimethylated_DNA-bd_dom	-	no_errors	FBXO21	HGNC	ENSG00000135108				133	0	0	83	8	8.79121
KSR2	0	genome.wustl.edu	37	12	117962760	117962760	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	117962760	117962760	C	T	SNP	KSR2	ENST00000339824	human	ensembl	74_37	-1	known	missense	c.2116	p.A706T	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom	-	no_errors	KSR2	HGNC	ENSG00000171435				35	0	0	27	4	12.9032
WSB2	0	genome.wustl.edu	37	12	118473035	118473035	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	118473035	118473035	T	C	SNP	WSB2	ENST00000315436	human	ensembl	74_37	-1	known	missense	c.928	p.T310A	0.983	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_SOCS_C,superfamily_WD40_repeat_dom,smart_WD40_repeat,smart_SOCS_C,pfscan_SOCS_C,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WSB2	HGNC	ENSG00000176871				105	0	0	94	6	6
TAOK3	0	genome.wustl.edu	37	12	118599655	118599655	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	118599655	118599655	G	A	SNP	TAOK3	ENST00000392533	human	ensembl	74_37	-1	known	nonsense	c.2077	p.R693*	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TAOK3	HGNC	ENSG00000135090				241	0	0	167	25	13.0208
SRRM4	0	genome.wustl.edu	37	12	119419782	119419782	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	119419782	119419782	T	A	SNP	SRRM4	ENST00000267260	human	ensembl	74_37	+1	known	missense	c.95	p.I32N	1.000	NULL	NULL	-	no_errors	SRRM4	HGNC	ENSG00000139767				15	0	0	13	3	18.75
SRRM4	0	genome.wustl.edu	37	12	119568536	119568536	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	119568536	119568536	G	A	SNP	SRRM4	ENST00000267260	human	ensembl	74_37	+1	known	missense	c.668	p.R223H	0.154	NULL	NULL	-	no_errors	SRRM4	HGNC	ENSG00000139767				33	0	0	24	6	20
HSPB8	0	genome.wustl.edu	37	12	119631646	119631646	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	119631646	119631646	G	A	SNP	HSPB8	ENST00000281938	human	ensembl	74_37	+1	known	missense	c.574	p.E192K	1.000	NULL	pfam_a-crystallin/Hsp20_dom,superfamily_HSP20-like_chaperone,pfscan_a-crystallin/Hsp20_dom,prints_Alpha-crystallin/HSP	-	no_errors	HSPB8	HGNC	ENSG00000152137				83	0	0	70	8	10.2564
CCDC60	0	genome.wustl.edu	37	12	119909923	119909923	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	119909923	119909923	C	T	SNP	CCDC60	ENST00000327554	human	ensembl	74_37	+1	known	missense	c.295	p.P99S	0.968	NULL	NULL	-	no_errors	CCDC60	HGNC	ENSG00000183273				288	0	0	237	19	7.42188
ETV6	0	genome.wustl.edu	37	12	12022490	12022490	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	12022490	12022490	G	A	SNP	ETV6	ENST00000396373	human	ensembl	74_37	+1	known	missense	c.596	p.R199Q	1.000	NULL	pfam_Ets_dom,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	ETV6	HGNC	ENSG00000139083				177	1	0.561798	148	14	8.64198
CIT	0	genome.wustl.edu	37	12	120295414	120295414	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	120295414	120295414	A	G	SNP	CIT	ENST00000261833	human	ensembl	74_37	-1	known	silent	c.327	p.A109	0.530	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Citron_Rho-interacting_kinase,pfscan_Prot_kinase_dom	pfam_Citron,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_HR1_rho-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,pirsf_Citron_Rho-interacting_kinase,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom	-	no_errors	CIT	HGNC	ENSG00000122966				286	0	0	216	18	7.69231
GCN1L1	0	genome.wustl.edu	37	12	120591161	120591161	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	120591161	120591161	C	T	SNP	GCN1L1	ENST00000300648	human	ensembl	74_37	-1	known	silent	c.3918	p.A1306	0.001	superfamily_ARM-type_fold	pfam_DUF3554,pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	GCN1L1	HGNC	ENSG00000089154				50	0	0	41	10	19.6078
RPLP0	0	genome.wustl.edu	37	12	120637168	120637168	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	120637168	120637168	T	C	SNP	RPLP0	ENST00000228306	human	ensembl	74_37	-1	known	missense	c.175	p.T59A	1.000	pfam_Ribosomal_L10/acidic_P0	pfam_Ribosomal_L10/acidic_P0,pfam_Ribosomal_L10/L12	-	no_errors	RPLP0	HGNC	ENSG00000089157				96	0	0	94	8	7.84314
MSI1	0	genome.wustl.edu	37	12	120783402	120783402	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	120783402	120783402	A	G	SNP	MSI1	ENST00000257552	human	ensembl	74_37	-1	known	missense	c.1081	p.Y361H	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	MSI1	HGNC	ENSG00000135097				111	0	0	119	10	7.75194
SPPL3	0	genome.wustl.edu	37	12	121206174	121206174	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	121206174	121206174	G	A	SNP	SPPL3	ENST00000353487	human	ensembl	74_37	-1	known	missense	c.727	p.R243C	1.000	pfam_Peptidase_A22B_SPP,smart_Preselin/SPP	pfam_Peptidase_A22B_SPP,smart_Preselin/SPP	-	no_errors	SPPL3	HGNC	ENSG00000157837				135	0	0	99	32	24.4275
P2RX4	0	genome.wustl.edu	37	12	121660770	121660770	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	121660770	121660770	G	A	SNP	P2RX4	ENST00000337233	human	ensembl	74_37	+1	known	missense	c.448	p.V150I	0.948	pfam_P2X_purnocptor,tigrfam_P2X_purnocptor	pfam_P2X_purnocptor,prints_P2X4_purnocptor,prints_P2X_purnocptor,prints_P2X1_purnocptor,tigrfam_P2X_purnocptor	-	no_errors	P2RX4	HGNC	ENSG00000135124				33	0	0	22	5	18.5185
KDM2B	0	genome.wustl.edu	37	12	122016814	122016814	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	122016814	122016814	T	C	SNP	KDM2B	ENST00000377071	human	ensembl	74_37	-1	known	missense	c.164	p.D55G	1.000	NULL	pfam_Znf_CXXC,pfam_F-box_dom,pfam_JmjC_dom,superfamily_Znf_FYVE_PHD,smart_JmjC_dom,smart_Znf_PHD,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	KDM2B	HGNC	ENSG00000089094				79	0	0	82	11	11.828
TMEM120B	0	genome.wustl.edu	37	12	122213555	122213555	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	122213555	122213555	G	A	SNP	TMEM120B	ENST00000342607	human	ensembl	74_37	+1	known	missense	c.947	p.G316D	1.000	pfam_TMPIT	pfam_TMPIT	-	no_errors	TMEM120B	HGNC	ENSG00000188735				92	0	0	100	8	7.40741
RHOF	0	genome.wustl.edu	37	12	122217484	122217484	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	122217484	122217484	G	A	SNP	RHOF	ENST00000267205	human	ensembl	74_37	-1	known	missense	c.556	p.R186W	1.000	pfam_Small_GTPase,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RHOF	HGNC	ENSG00000139725				74	0	0	70	17	19.5402
MLXIP	0	genome.wustl.edu	37	12	122623419	122623419	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	122623419	122623419	T	A	SNP	MLXIP	ENST00000319080	human	ensembl	74_37	+1	known	missense	c.2442	p.D814E	0.998	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	MLXIP	HGNC	ENSG00000175727				50	0	0	32	7	17.9487
MLXIP	0	genome.wustl.edu	37	12	122625562	122625562	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	122625562	122625562	T	C	SNP	MLXIP	ENST00000319080	human	ensembl	74_37	+1	known	missense	c.2570	p.L857P	0.981	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	MLXIP	HGNC	ENSG00000175727				56	0	0	61	20	24.6914
IL31	0	genome.wustl.edu	37	12	122657248	122657248	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	122657248	122657248	G	A	SNP	IL31	ENST00000377035	human	ensembl	74_37	-1	known	missense	c.206	p.T69M	0.000	NULL	NULL	-	no_errors	IL31	HGNC	ENSG00000204671				36	0	0	26	8	23.5294
VPS33A	0	genome.wustl.edu	37	12	122720408	122720408	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	122720408	122720408	C	T	SNP	VPS33A	ENST00000267199	human	ensembl	74_37	-1	known	silent	c.1365	p.P455	0.004	pfam_Sec1-like,superfamily_Sec1-like	pfam_Sec1-like,superfamily_Sec1-like	-	no_errors	VPS33A	HGNC	ENSG00000139719				227	1	0.438596	212	29	12.0332
HCAR1	0	genome.wustl.edu	37	12	123214131	123214131	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	123214131	123214131	G	A	SNP	HCAR1	ENST00000356987	human	ensembl	74_37	-1	known	silent	c.756	p.C252	0.003	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	HCAR1	HGNC	ENSG00000196917				80	0	0	91	7	7.14286
CCDC62	0	genome.wustl.edu	37	12	123265820	123265820	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	123265820	123265820	G	T	SNP	CCDC62	ENST00000253079	human	ensembl	74_37	+1	known	missense	c.339	p.Q113H	0.999	NULL	superfamily_Prefoldin	-	no_errors	CCDC62	HGNC	ENSG00000130783				114	0	0	83	21	20.1923
CCDC62	0	genome.wustl.edu	37	12	123285971	123285971	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	123285971	123285971	A	G	SNP	CCDC62	ENST00000253079	human	ensembl	74_37	+1	known	silent	c.1278	p.T426	0.000	NULL	superfamily_Prefoldin	-	no_errors	CCDC62	HGNC	ENSG00000130783				44	0	0	41	6	12.766
CCDC62	0	genome.wustl.edu	37	12	123297963	123297963	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	123297963	123297963	A	G	SNP	CCDC62	ENST00000253079	human	ensembl	74_37	+1	known	silent	c.1998	p.T666	0.000	NULL	superfamily_Prefoldin	-	no_errors	CCDC62	HGNC	ENSG00000130783				49	0	0	52	3	5.45455
RILPL2	0	genome.wustl.edu	37	12	123915133	123915133	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	123915133	123915133	A	G	SNP	RILPL2	ENST00000280571	human	ensembl	74_37	-1	known	missense	c.413	p.L138P	1.000	pfam_RILP	pfam_RILP	-	no_errors	RILPL2	HGNC	ENSG00000150977				107	0	0	97	9	8.49057
TMED2	0	genome.wustl.edu	37	12	124069277	124069277	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	124069277	124069277	T	C	SNP	TMED2	ENST00000262225	human	ensembl	74_37	+1	known	missense	c.94	p.C32R	1.000	pfam_GOLD,superfamily_GOLD,pfscan_GOLD	pfam_GOLD,superfamily_GOLD,pfscan_GOLD	-	no_errors	TMED2	HGNC	ENSG00000086598				71	0	0	77	8	9.41176
ATP6V0A2	0	genome.wustl.edu	37	12	124228803	124228803	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	124228803	124228803	C	T	SNP	ATP6V0A2	ENST00000330342	human	ensembl	74_37	+1	known	silent	c.1245	p.F415	0.931	pfam_V-ATPase_116kDa_su	pfam_V-ATPase_116kDa_su	-	no_errors	ATP6V0A2	HGNC	ENSG00000185344				213	0	0	134	35	20.7101
DNAH10	0	genome.wustl.edu	37	12	124268706	124268706	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	124268706	124268706	C	T	SNP	DNAH10	ENST00000409039	human	ensembl	74_37	+1	known	silent	c.1029	p.T343	0.040	pfam_Dynein_heavy_dom-1	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_PyrdxlP-dep_Trfase,smart_AAA+_ATPase	-	no_errors	DNAH10	HGNC	ENSG00000197653				103	0	0	70	6	7.89474
DNAH10	0	genome.wustl.edu	37	12	124330561	124330561	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	124330561	124330561	T	C	SNP	DNAH10	ENST00000409039	human	ensembl	74_37	+1	known	missense	c.5320	p.F1774L	0.999	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_PyrdxlP-dep_Trfase,smart_AAA+_ATPase	-	no_errors	DNAH10	HGNC	ENSG00000197653				122	0	0	117	8	6.4
NCOR2	0	genome.wustl.edu	37	12	124832728	124832728	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	124832728	124832728	C	T	SNP	NCOR2	ENST00000356219	human	ensembl	74_37	-1	known	missense	c.3998	p.S1333N	1.000	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR2	HGNC	ENSG00000196498				44	0	0	38	4	9.52381
NCOR2	0	genome.wustl.edu	37	12	124835152	124835152	+	Silent	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	124835152	124835152	G	T	SNP	NCOR2	ENST00000356219	human	ensembl	74_37	-1	known	silent	c.3846	p.G1282	0.993	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR2	HGNC	ENSG00000196498				105	0	0	94	7	6.93069
NCOR2	0	genome.wustl.edu	37	12	124882718	124882718	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	124882718	124882718	T	G	SNP	NCOR2	ENST00000356219	human	ensembl	74_37	-1	known	missense	c.1823	p.E608A	1.000	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR2	HGNC	ENSG00000196498				96	0	0	108	8	6.89655
NCOR2	0	genome.wustl.edu	37	12	124885063	124885063	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	124885063	124885063	C	A	SNP	NCOR2	ENST00000356219	human	ensembl	74_37	-1	known	missense	c.1797	p.Q599H	1.000	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR2	HGNC	ENSG00000196498				121	0	0	135	13	8.78378
SCARB1	0	genome.wustl.edu	37	12	125294824	125294824	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	125294824	125294824	C	A	SNP	SCARB1	ENST00000415380	human	ensembl	74_37	-1	known	missense	c.738	p.W246C	1.000	pfam_CD36	pfam_CD36,prints_CD36,prints_CD36_antigen	-	no_errors	SCARB1	HGNC	ENSG00000073060				40	0	0	54	6	10
DHX37	0	genome.wustl.edu	37	12	125435020	125435020	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	125435020	125435020	T	C	SNP	DHX37	ENST00000308736	human	ensembl	74_37	-1	known	silent	c.3060	p.E1020	0.814	NULL	pfam_DUF1605,pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_T2SS_protein-E,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX37	HGNC	ENSG00000150990				28	0	0	35	2	5.40541
DHX37	0	genome.wustl.edu	37	12	125444895	125444895	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	125444895	125444895	T	C	SNP	DHX37	ENST00000308736	human	ensembl	74_37	-1	known	missense	c.2120	p.D707G	1.000	superfamily_P-loop_NTPase,pfscan_Helicase_C	pfam_DUF1605,pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_T2SS_protein-E,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX37	HGNC	ENSG00000150990				120	1	0.826446	125	7	5.30303
AACS	0	genome.wustl.edu	37	12	125591759	125591759	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	125591759	125591759	T	C	SNP	AACS	ENST00000316519	human	ensembl	74_37	+1	known	missense	c.860	p.I287T	1.000	pfam_AMP-dep_Synth/Lig,tigrfam_Acac_CoA_synth	pfam_AMP-dep_Synth/Lig,tigrfam_Acac_CoA_synth	-	no_errors	AACS	HGNC	ENSG00000081760				59	0	0	65	4	5.7971
AACS	0	genome.wustl.edu	37	12	125621279	125621279	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	125621279	125621279	A	T	SNP	AACS	ENST00000316519	human	ensembl	74_37	+1	known	missense	c.1750	p.I584F	0.879	tigrfam_Acac_CoA_synth	pfam_AMP-dep_Synth/Lig,tigrfam_Acac_CoA_synth	-	no_errors	AACS	HGNC	ENSG00000081760				67	0	0	61	4	6.15385
TMEM132B	0	genome.wustl.edu	37	12	126004077	126004077	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	126004077	126004077	T	C	SNP	TMEM132B	ENST00000299308	human	ensembl	74_37	+1	known	missense	c.1184	p.V395A	0.992	NULL	NULL	-	no_errors	TMEM132B	HGNC	ENSG00000139364				124	0	0	93	11	10.5769
TMEM132D	0	genome.wustl.edu	37	12	129559064	129559064	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	129559064	129559064	T	C	SNP	TMEM132D	ENST00000422113	human	ensembl	74_37	-1	known	missense	c.2656	p.T886A	0.997	NULL	NULL	-	no_errors	TMEM132D	HGNC	ENSG00000151952				72	0	0	60	4	6.25
TMEM132D	0	genome.wustl.edu	37	12	130185180	130185180	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	130185180	130185180	G	A	SNP	TMEM132D	ENST00000422113	human	ensembl	74_37	-1	known	missense	c.143	p.P48L	0.999	NULL	NULL	-	no_errors	TMEM132D	HGNC	ENSG00000151952				54	0	0	45	5	10
FZD10	0	genome.wustl.edu	37	12	130648123	130648123	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	130648123	130648123	G	A	SNP	FZD10	ENST00000539839	human	ensembl	74_37	+1	known	missense	c.538	p.A180T	0.980	NULL	NULL	-	no_errors	FZD10	HGNC	ENSG00000111432				27	0	0	25	4	13.7931
RIMBP2	0	genome.wustl.edu	37	12	130897259	130897259	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	130897259	130897259	T	A	SNP	RIMBP2	ENST00000261655	human	ensembl	74_37	-1	known	missense	c.2726	p.N909I	1.000	pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,superfamily_Fibronectin_type3,smart_SH3_domain,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	RIMBP2	HGNC	ENSG00000060709				96	0	0	90	8	8.16327
RIMBP2	0	genome.wustl.edu	37	12	130898739	130898739	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	130898739	130898739	C	T	SNP	RIMBP2	ENST00000261655	human	ensembl	74_37	-1	known	silent	c.2583	p.P861	0.217	pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain	pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,superfamily_Fibronectin_type3,smart_SH3_domain,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	RIMBP2	HGNC	ENSG00000060709				111	0	0	117	8	6.4
GPRC5D	0	genome.wustl.edu	37	12	13095228	13095228	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	13095228	13095228	T	C	SNP	GPRC5D	ENST00000228887	human	ensembl	74_37	-1	known	silent	c.930	p.A310	1.000	NULL	pfam_GPCR_3_C	-	no_errors	GPRC5D	HGNC	ENSG00000111291				117	0	0	141	12	7.84314
GPR133	0	genome.wustl.edu	37	12	131569156	131569156	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	131569156	131569156	G	A	SNP	GPR133	ENST00000261654	human	ensembl	74_37	+1	known	missense	c.1619	p.R540H	0.853	pfam_GPS_dom,smart_GPS_dom,pfscan_GPS_dom	pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl_sf,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR133	HGNC	ENSG00000111452				45	0	0	36	12	25
SFSWAP	0	genome.wustl.edu	37	12	132241057	132241057	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	132241057	132241057	C	T	SNP	SFSWAP	ENST00000261674	human	ensembl	74_37	+1	known	missense	c.1588	p.P530S	0.000	NULL	pfam_SWAP_N_domain,pfam_Surp,superfamily_Surp,smart_Surp,pfscan_Surp	-	no_errors	SFSWAP	HGNC	ENSG00000061936				114	0	0	99	7	6.60377
SFSWAP	0	genome.wustl.edu	37	12	132249139	132249139	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	132249139	132249139	C	T	SNP	SFSWAP	ENST00000261674	human	ensembl	74_37	+1	known	missense	c.1859	p.A620V	0.029	NULL	pfam_SWAP_N_domain,pfam_Surp,superfamily_Surp,smart_Surp,pfscan_Surp	-	no_errors	SFSWAP	HGNC	ENSG00000061936				53	0	0	47	5	9.61538
SFSWAP	0	genome.wustl.edu	37	12	132281751	132281751	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	132281751	132281751	C	T	SNP	SFSWAP	ENST00000261674	human	ensembl	74_37	+1	known	missense	c.2563	p.R855W	0.972	NULL	pfam_SWAP_N_domain,pfam_Surp,superfamily_Surp,smart_Surp,pfscan_Surp	-	no_errors	SFSWAP	HGNC	ENSG00000061936				139	0	0	119	21	15
MMP17	0	genome.wustl.edu	37	12	132334582	132334582	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	132334582	132334582	C	T	SNP	MMP17	ENST00000360564	human	ensembl	74_37	+1	known	silent	c.1440	p.D480	0.846	pfam_Hemopexin-like_repeat,superfamily_Hemopexin-like_dom,smart_Hemopexin-like_repeat,pirsf_Pept_M10A_Metazoans	pfam_Pept_M10_metallopeptidase,pfam_Hemopexin-like_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin-like_repeat,pirsf_Pept_M10A_Metazoans,prints_Pept_M10A	-	no_errors	MMP17	HGNC	ENSG00000198598				28	0	0	27	4	12.9032
EP400	0	genome.wustl.edu	37	12	132508396	132508396	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	132508396	132508396	C	T	SNP	EP400	ENST00000333577	human	ensembl	74_37	+1	known	missense	c.4873	p.P1625S	1.000	NULL	pfam_SNF2_N,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Homeodomain-like,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Myb-like_dom,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	EP400	HGNC	ENSG00000183495				48	0	0	35	11	23.913
EP400	0	genome.wustl.edu	37	12	132534928	132534928	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	132534928	132534928	C	T	SNP	EP400	ENST00000333577	human	ensembl	74_37	+1	known	missense	c.7369	p.H2457Y	0.998	NULL	pfam_SNF2_N,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Homeodomain-like,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Myb-like_dom,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	EP400	HGNC	ENSG00000183495				78	0	0	54	16	22.8571
P2RX2	0	genome.wustl.edu	37	12	133197925	133197925	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	133197925	133197925	T	C	SNP	P2RX2	ENST00000343948	human	ensembl	74_37	+1	known	silent	c.990	p.H330	0.645	pfam_P2X_purnocptor,prints_P2X_purnocptor,tigrfam_P2X_purnocptor	pfam_P2X_purnocptor,prints_P2X2_purnocptor,prints_P2X_purnocptor,tigrfam_P2X_purnocptor	-	no_errors	P2RX2	HGNC	ENSG00000187848				76	0	0	74	6	7.5
POLE	0	genome.wustl.edu	37	12	133214612	133214612	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	133214612	133214612	T	C	SNP	POLE	ENST00000320574	human	ensembl	74_37	-1	known	missense	c.5666	p.Y1889C	1.000	pfam_DNA_pol_e_suA_C	pfam_DNA_pol_e_suA_C,pfam_DNA-dir_DNA_pol_B_exonuc,pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_3'-5'_exonuclease_PolB-like,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B	-	no_errors	POLE	HGNC	ENSG00000177084				93	0	0	90	9	9.09091
POLE	0	genome.wustl.edu	37	12	133234500	133234500	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	133234500	133234500	C	T	SNP	POLE	ENST00000320574	human	ensembl	74_37	-1	known	missense	c.3332	p.R1111Q	1.000	pfam_DNA-dir_DNA_pol_B_multi_dom	pfam_DNA_pol_e_suA_C,pfam_DNA-dir_DNA_pol_B_exonuc,pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_3'-5'_exonuclease_PolB-like,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B	-	no_errors	POLE	HGNC	ENSG00000177084				158	0	0	110	32	22.5352
POLE	0	genome.wustl.edu	37	12	133245074	133245074	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	133245074	133245074	T	G	SNP	POLE	ENST00000320574	human	ensembl	74_37	-1	known	missense	c.2041	p.S681R	1.000	pfam_DNA-dir_DNA_pol_B_multi_dom,smart_DNA-dir_DNA_pol_B	pfam_DNA_pol_e_suA_C,pfam_DNA-dir_DNA_pol_B_exonuc,pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_3'-5'_exonuclease_PolB-like,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B	-	no_errors	POLE	HGNC	ENSG00000177084				90	0	0	85	8	8.60215
POLE	0	genome.wustl.edu	37	12	133249803	133249803	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	133249803	133249803	C	T	SNP	POLE	ENST00000320574	human	ensembl	74_37	-1	known	missense	c.1420	p.V474I	1.000	pfam_3'-5'_exonuclease_PolB-like,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B	pfam_DNA_pol_e_suA_C,pfam_DNA-dir_DNA_pol_B_exonuc,pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_3'-5'_exonuclease_PolB-like,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B	-	no_errors	POLE	HGNC	ENSG00000177084				84	0	0	68	18	20.9302
PGAM5	0	genome.wustl.edu	37	12	133291482	133291482	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	133291482	133291482	A	G	SNP	PGAM5	ENST00000498926	human	ensembl	74_37	+1	known	missense	c.230	p.N77S	0.378	NULL	pfam_His_Pase_superF_clade-1,smart_His_Pase_superF_clade-1	-	no_errors	PGAM5	HGNC	ENSG00000247077				80	0	0	68	4	5.55556
ANKLE2	0	genome.wustl.edu	37	12	133306795	133306795	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	133306795	133306795	T	C	SNP	ANKLE2	ENST00000357997	human	ensembl	74_37	-1	known	missense	c.1953	p.I651M	0.054	NULL	pfam_LEM_dom,superfamily_LEM/LEM-like_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Ribosomal_L9/RNase_H1_N,pfscan_LEM_dom	-	no_errors	ANKLE2	HGNC	ENSG00000176915				86	0	0	70	4	5.40541
ANKLE2	0	genome.wustl.edu	37	12	133324563	133324563	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	133324563	133324563	T	C	SNP	ANKLE2	ENST00000357997	human	ensembl	74_37	-1	known	missense	c.1085	p.N362S	1.000	superfamily_Ankyrin_rpt-contain_dom	pfam_LEM_dom,superfamily_LEM/LEM-like_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Ribosomal_L9/RNase_H1_N,pfscan_LEM_dom	-	no_errors	ANKLE2	HGNC	ENSG00000176915				67	0	0	64	7	9.85915
GOLGA3	0	genome.wustl.edu	37	12	133350896	133350896	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	133350896	133350896	G	A	SNP	GOLGA3	ENST00000204726	human	ensembl	74_37	-1	known	missense	c.4154	p.P1385L	0.855	NULL	superfamily_Prefoldin	-	no_errors	GOLGA3	HGNC	ENSG00000090615				65	0	0	51	15	22.7273
GOLGA3	0	genome.wustl.edu	37	12	133363022	133363022	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	133363022	133363022	C	T	SNP	GOLGA3	ENST00000204726	human	ensembl	74_37	-1	known	missense	c.3026	p.R1009H	1.000	NULL	superfamily_Prefoldin	-	no_errors	GOLGA3	HGNC	ENSG00000090615				22	0	0	22	6	21.4286
CHFR	0	genome.wustl.edu	37	12	133433166	133433166	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	133433166	133433166	T	C	SNP	CHFR	ENST00000266880	human	ensembl	74_37	-1	known	missense	c.1153	p.I385V	1.000	NULL	pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,smart_Znf_RING,pfscan_FHA_dom,pfscan_Znf_RING	-	no_errors	CHFR	HGNC	ENSG00000072609				359	0	0	292	30	9.31677
CHFR	0	genome.wustl.edu	37	12	133433184	133433184	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	133433184	133433184	T	C	SNP	CHFR	ENST00000266880	human	ensembl	74_37	-1	known	missense	c.1135	p.M379V	1.000	NULL	pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,smart_Znf_RING,pfscan_FHA_dom,pfscan_Znf_RING	-	no_errors	CHFR	HGNC	ENSG00000072609				354	0	0	262	32	10.8844
GRIN2B	0	genome.wustl.edu	37	12	13716607	13716607	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	13716607	13716607	C	T	SNP	GRIN2B	ENST00000609686	human	ensembl	74_37	-1	known	missense	c.3565	p.V1189M	0.988	pfam_NMDAR2_C	pfam_NMDAR2_C,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2B	HGNC	ENSG00000273079				94	0	0	92	16	14.8148
GRIN2B	0	genome.wustl.edu	37	12	13768096	13768096	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	13768096	13768096	C	T	SNP	GRIN2B	ENST00000609686	human	ensembl	74_37	-1	known	missense	c.1606	p.V536I	1.000	pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_NMDAR2_C,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2B	HGNC	ENSG00000273079				115	0	0	87	14	13.8614
ATF7IP	0	genome.wustl.edu	37	12	14577340	14577340	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	14577340	14577340	C	T	SNP	ATF7IP	ENST00000261168	human	ensembl	74_37	+1	known	missense	c.491	p.P164L	0.000	NULL	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	ATF7IP	HGNC	ENSG00000171681				72	0	0	91	6	6.18557
ATF7IP	0	genome.wustl.edu	37	12	14649274	14649274	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	14649274	14649274	T	C	SNP	ATF7IP	ENST00000261168	human	ensembl	74_37	+1	known	silent	c.3390	p.H1130	0.975	NULL	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	ATF7IP	HGNC	ENSG00000171681				41	0	0	26	4	13.3333
GUCY2C	0	genome.wustl.edu	37	12	14804958	14804958	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	14804958	14804958	T	A	SNP	GUCY2C	ENST00000261170	human	ensembl	74_37	-1	known	missense	c.1540	p.I514F	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	pfam_A/G_cyclase,pfam_ANF_lig-bd_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_A/G_cyclase,superfamily_Peripla_BP_I,superfamily_Kinase-like_dom,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_A/G_cyclase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_A/G_cyclase	-	no_errors	GUCY2C	HGNC	ENSG00000070019				91	0	0	56	6	9.67742
GUCY2C	0	genome.wustl.edu	37	12	14813967	14813967	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	14813967	14813967	T	C	SNP	GUCY2C	ENST00000261170	human	ensembl	74_37	-1	known	missense	c.1312	p.T438A	1.000	NULL	pfam_A/G_cyclase,pfam_ANF_lig-bd_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_A/G_cyclase,superfamily_Peripla_BP_I,superfamily_Kinase-like_dom,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_A/G_cyclase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_A/G_cyclase	-	no_errors	GUCY2C	HGNC	ENSG00000070019				97	0	0	75	8	9.63855
GUCY2C	0	genome.wustl.edu	37	12	14822720	14822720	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	14822720	14822720	A	G	SNP	GUCY2C	ENST00000261170	human	ensembl	74_37	-1	known	silent	c.1218	p.P406	0.000	superfamily_Peripla_BP_I	pfam_A/G_cyclase,pfam_ANF_lig-bd_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_A/G_cyclase,superfamily_Peripla_BP_I,superfamily_Kinase-like_dom,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_A/G_cyclase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_A/G_cyclase	-	no_errors	GUCY2C	HGNC	ENSG00000070019				108	0	0	111	10	8.26446
GUCY2C	0	genome.wustl.edu	37	12	14849242	14849242	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	14849242	14849242	A	G	SNP	GUCY2C	ENST00000261170	human	ensembl	74_37	-1	known	silent	c.141	p.F47	0.905	superfamily_Peripla_BP_I	pfam_A/G_cyclase,pfam_ANF_lig-bd_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_A/G_cyclase,superfamily_Peripla_BP_I,superfamily_Kinase-like_dom,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_A/G_cyclase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_A/G_cyclase	-	no_errors	GUCY2C	HGNC	ENSG00000070019				48	0	0	42	7	14.2857
PTPRO	0	genome.wustl.edu	37	12	15652375	15652375	+	Splice_Site	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	15652375	15652375	G	T	SNP	PTPRO	ENST00000281171	human	ensembl	74_37	+1	known	splice_site	c.509-1	e4-1	1.000	-	-	-	no_errors	PTPRO	HGNC	ENSG00000151490				100	1	0.990099	79	8	9.1954
PTPRO	0	genome.wustl.edu	37	12	15679131	15679131	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	15679131	15679131	A	C	SNP	PTPRO	ENST00000281171	human	ensembl	74_37	+1	known	missense	c.2099	p.N700T	1.000	superfamily_Fibronectin_type3,smart_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRO	HGNC	ENSG00000151490				115	1	0.862069	104	9	7.9646
EPS8	0	genome.wustl.edu	37	12	15803899	15803899	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	15803899	15803899	G	A	SNP	EPS8	ENST00000281172	human	ensembl	74_37	-1	known	missense	c.1292	p.P431L	0.926	NULL	pfam_PTB,pfam_SH3_domain,pfam_PTB/PI_dom,pfam_SH3_2,superfamily_SH3_domain,superfamily_SAM/pointed,smart_PTB/PI_dom,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	EPS8	HGNC	ENSG00000151491				148	0	0	131	9	6.42857
EPS8	0	genome.wustl.edu	37	12	15811494	15811494	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	15811494	15811494	T	C	SNP	EPS8	ENST00000281172	human	ensembl	74_37	-1	known	silent	c.963	p.K321	1.000	NULL	pfam_PTB,pfam_SH3_domain,pfam_PTB/PI_dom,pfam_SH3_2,superfamily_SH3_domain,superfamily_SAM/pointed,smart_PTB/PI_dom,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	EPS8	HGNC	ENSG00000151491				225	0	0	183	14	7.1066
STRAP	0	genome.wustl.edu	37	12	16035702	16035702	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	16035702	16035702	G	A	SNP	STRAP	ENST00000025399	human	ensembl	74_37	+1	known	missense	c.61	p.A21T	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	STRAP	HGNC	ENSG00000023734				45	0	0	32	5	13.5135
ADIPOR2	0	genome.wustl.edu	37	12	1882031	1882031	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	1882031	1882031	T	C	SNP	ADIPOR2	ENST00000357103	human	ensembl	74_37	+1	known	silent	c.195	p.S65	0.946	NULL	pfam_HlyIII-related	-	no_errors	ADIPOR2	HGNC	ENSG00000006831				116	0	0	90	7	7.21649
AEBP2	0	genome.wustl.edu	37	12	19593269	19593269	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	19593269	19593269	T	C	SNP	AEBP2	ENST00000398864	human	ensembl	74_37	+1	known	silent	c.636	p.D212	0.987	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	AEBP2	HGNC	ENSG00000139154				41	0	0	37	6	13.9535
AEBP2	0	genome.wustl.edu	37	12	19615467	19615467	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	19615467	19615467	T	C	SNP	AEBP2	ENST00000398864	human	ensembl	74_37	+1	known	missense	c.695	p.V232A	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	AEBP2	HGNC	ENSG00000139154				30	0	0	20	4	16.6667
AEBP2	0	genome.wustl.edu	37	12	19671029	19671029	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	19671029	19671029	C	T	SNP	AEBP2	ENST00000398864	human	ensembl	74_37	+1	known	missense	c.1490	p.P497L	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	AEBP2	HGNC	ENSG00000139154				35	0	0	16	6	27.2727
CACNA2D4	0	genome.wustl.edu	37	12	1983839	1983839	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	1983839	1983839	C	T	SNP	CACNA2D4	ENST00000382722	human	ensembl	74_37	-1	known	silent	c.1809	p.L603	1.000	NULL	pfam_VWA_N,pfam_Cache_domain,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	CACNA2D4	HGNC	ENSG00000151062				59	0	0	46	5	9.80392
DCP1B	0	genome.wustl.edu	37	12	2055377	2055377	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	2055377	2055377	T	C	SNP	DCP1B	ENST00000280665	human	ensembl	74_37	-1	known	missense	c.1849	p.M617V	0.006	NULL	pfam_DCP1	-	no_errors	DCP1B	HGNC	ENSG00000151065				73	0	0	45	5	10
PDE3A	0	genome.wustl.edu	37	12	20803459	20803459	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	20803459	20803459	T	C	SNP	PDE3A	ENST00000359062	human	ensembl	74_37	+1	known	silent	c.2850	p.D950	1.000	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom	-	no_errors	PDE3A	HGNC	ENSG00000172572				112	0	0	66	8	10.8108
DCP1B	0	genome.wustl.edu	37	12	2102471	2102471	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	2102471	2102471	A	T	SNP	DCP1B	ENST00000280665	human	ensembl	74_37	-1	known	missense	c.278	p.F93Y	1.000	pfam_DCP1	pfam_DCP1	-	no_errors	DCP1B	HGNC	ENSG00000151065				137	0	0	110	12	9.83607
SLCO1B3	0	genome.wustl.edu	37	12	21033815	21033815	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	21033815	21033815	A	T	SNP	SLCO1B3	ENST00000553473	human	ensembl	74_37	+1	known	missense	c.1358	p.D453V	0.388	pfam_OA_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO1B3	HGNC	ENSG00000111700				95	0	0	84	7	7.69231
SLCO1B7	0	genome.wustl.edu	37	12	21201738	21201738	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	21201738	21201738	T	A	SNP	SLCO1B7	ENST00000554957	human	ensembl	74_37	+1	known	missense	c.1228	p.L410M	0.869	pfam_OA_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO1B7	HGNC	ENSG00000205754				42	0	0	25	3	10.7143
SLCO1B1	0	genome.wustl.edu	37	12	21327601	21327601	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	21327601	21327601	T	A	SNP	SLCO1B1	ENST00000256958	human	ensembl	74_37	+1	known	missense	c.317	p.I106N	0.015	pfam_OA_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO1B1	HGNC	ENSG00000134538				96	0	0	54	5	8.47458
SLCO1B1	0	genome.wustl.edu	37	12	21377697	21377697	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	21377697	21377697	A	G	SNP	SLCO1B1	ENST00000256958	human	ensembl	74_37	+1	known	missense	c.1789	p.T597A	0.264	pfam_OA_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO1B1	HGNC	ENSG00000134538				139	0	0	96	6	5.88235
RECQL	0	genome.wustl.edu	37	12	21636379	21636379	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	21636379	21636379	T	C	SNP	RECQL	ENST00000421138	human	ensembl	74_37	-1	known	missense	c.631	p.R211G	0.001	pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd,tigrfam_DNA_helicase_ATP-dep_RecQ	pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_RQC_domain,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ	-	no_errors	RECQL	HGNC	ENSG00000004700				97	0	0	59	7	10.6061
ABCC9	0	genome.wustl.edu	37	12	21981972	21981972	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	21981972	21981972	G	A	SNP	ABCC9	ENST00000261200	human	ensembl	74_37	-1	known	missense	c.3589	p.R1197C	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,prints_Sulphorea_rcpt,prints_Sulphonylurea_rcpt-2	-	no_errors	ABCC9	HGNC	ENSG00000069431				98	0	0	82	7	7.86517
ABCC9	0	genome.wustl.edu	37	12	22069897	22069897	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	22069897	22069897	C	T	SNP	ABCC9	ENST00000261200	human	ensembl	74_37	-1	known	missense	c.547	p.V183M	1.000	NULL	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,prints_Sulphorea_rcpt,prints_Sulphonylurea_rcpt-2	-	no_errors	ABCC9	HGNC	ENSG00000069431				302	0	0	209	24	10.3004
ABCC9	0	genome.wustl.edu	37	12	22078945	22078945	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	22078945	22078945	C	T	SNP	ABCC9	ENST00000261200	human	ensembl	74_37	-1	known	missense	c.337	p.V113I	1.000	NULL	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,prints_Sulphorea_rcpt,prints_Sulphonylurea_rcpt-2	-	no_errors	ABCC9	HGNC	ENSG00000069431				131	1	0.757576	105	7	6.25
SOX5	0	genome.wustl.edu	37	12	23893932	23893932	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	23893932	23893932	C	A	SNP	SOX5	ENST00000451604	human	ensembl	74_37	-1	known	missense	c.610	p.G204C	1.000	NULL	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	SOX5	HGNC	ENSG00000134532				61	0	0	59	12	16.9014
MIR920	0	genome.wustl.edu	37	12	24365362	24365362	+	RNA	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	24365362	24365362	T	G	SNP	MIR920	ENST00000401373	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MIR920	HGNC	ENSG00000216192				126	0	0	117	10	7.87402
LINC00477	0	genome.wustl.edu	37	12	24736709	24736709	+	RNA	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	24736709	24736709	G	T	SNP	LINC00477	ENST00000483544	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.122	-	-	-	no_errors	LINC00477	HGNC	ENSG00000197503				84	0	0	78	5	6.0241
IQSEC3	0	genome.wustl.edu	37	12	247988	247988	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	247988	247988	G	A	SNP	IQSEC3	ENST00000326261	human	ensembl	74_37	+1	known	missense	c.1459	p.D487N	1.000	NULL	pfam_Sec7_dom,superfamily_Sec7_dom,smart_Sec7_dom,pfscan_IQ_motif_EF-hand-BS,pfscan_Sec7_dom	-	no_errors	IQSEC3	HGNC	ENSG00000120645				26	0	0	25	5	16.6667
IFLTD1	0	genome.wustl.edu	37	12	25702341	25702341	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	25702341	25702341	T	C	SNP	IFLTD1	ENST00000458174	human	ensembl	74_37	-1	known	missense	c.229	p.S77G	0.218	NULL	pfam_Lamin_tail_dom	-	no_errors	IFLTD1	HGNC	ENSG00000152936				67	0	0	63	8	11.2676
ITPR2	0	genome.wustl.edu	37	12	26571996	26571996	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	26571996	26571996	A	G	SNP	ITPR2	ENST00000381340	human	ensembl	74_37	-1	known	missense	c.7096	p.F2366L	1.000	pfam_Ion_trans_dom	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ARM-type_fold,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR2	HGNC	ENSG00000123104				74	0	0	52	16	23.5294
ITPR2	0	genome.wustl.edu	37	12	26709200	26709200	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	26709200	26709200	C	T	SNP	ITPR2	ENST00000381340	human	ensembl	74_37	-1	known	missense	c.4930	p.D1644N	0.992	superfamily_ARM-type_fold	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ARM-type_fold,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR2	HGNC	ENSG00000123104				187	0	0	160	23	12.5683
ITPR2	0	genome.wustl.edu	37	12	26864129	26864129	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	26864129	26864129	T	A	SNP	ITPR2	ENST00000381340	human	ensembl	74_37	-1	known	missense	c.928	p.T310S	0.999	pfam_MIR_motif,superfamily_MIR_motif,smart_MIR_motif,prints_InsP3_rcpt-bd	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ARM-type_fold,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR2	HGNC	ENSG00000123104				61	0	0	34	3	8.10811
ASUN	0	genome.wustl.edu	37	12	27087529	27087529	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	27087529	27087529	A	G	SNP	ASUN	ENST00000261191	human	ensembl	74_37	-1	known	missense	c.260	p.V87A	1.000	pfam_Cell_cycle_regulator_Mat89Bb	pfam_Cell_cycle_regulator_Mat89Bb	-	no_errors	ASUN	HGNC	ENSG00000064102				234	0	0	163	14	7.9096
TM7SF3	0	genome.wustl.edu	37	12	27143484	27143484	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	27143484	27143484	A	G	SNP	TM7SF3	ENST00000343028	human	ensembl	74_37	-1	known	missense	c.767	p.V256A	1.000	NULL	NULL	-	no_errors	TM7SF3	HGNC	ENSG00000064115				97	0	0	90	7	7.21649
MED21	0	genome.wustl.edu	37	12	27179427	27179427	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	27179427	27179427	G	T	SNP	MED21	ENST00000282892	human	ensembl	74_37	+1	known	missense	c.117	p.Q39H	1.000	pfam_Mediator_Med21	pfam_Mediator_Med21	-	no_errors	MED21	HGNC	ENSG00000152944				81	0	0	52	7	11.8644
CACNA1C	0	genome.wustl.edu	37	12	2774756	2774756	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	2774756	2774756	C	T	SNP	CACNA1C	ENST00000399634	human	ensembl	74_37	+1	known	missense	c.4408	p.L1470F	1.000	pfam_Ion_trans_dom,pfam_PKD1_2_channel	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCC_L_a1csu,prints_VDCCAlpha1,prints_VDCC_L_a1su	-	no_errors	CACNA1C	HGNC	ENSG00000151067				101	0	0	92	6	6.12245
FAR2	0	genome.wustl.edu	37	12	29485537	29485537	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	29485537	29485537	T	C	SNP	FAR2	ENST00000182377	human	ensembl	74_37	+1	known	missense	c.1262	p.F421S	1.000	pfam_FAR	pfam_Male_sterile_NAD-bd,pfam_FAR,pfam_Epimerase_deHydtase,pfam_3Beta_OHSteriod_DH/Estase,pfam_Polysac_CapD-like	-	no_errors	FAR2	HGNC	ENSG00000064763				81	0	0	55	4	6.77966
OVCH1	0	genome.wustl.edu	37	12	29592296	29592296	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	29592296	29592296	T	C	SNP	OVCH1	ENST00000318184	human	ensembl	74_37	-1	known	missense	c.3229	p.N1077D	0.005	NULL	pfam_Peptidase_S1,pfam_CUB_dom,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,superfamily_CUB_dom,smart_Peptidase_S1,smart_CUB_dom,pfscan_CUB_dom,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	OVCH1	HGNC	ENSG00000187950				34	0	0	21	3	12.5
OVCH1	0	genome.wustl.edu	37	12	29630380	29630380	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	29630380	29630380	T	C	SNP	OVCH1	ENST00000318184	human	ensembl	74_37	-1	known	silent	c.1140	p.P380	0.011	superfamily_CUB_dom,pfscan_CUB_dom	pfam_Peptidase_S1,pfam_CUB_dom,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,superfamily_CUB_dom,smart_Peptidase_S1,smart_CUB_dom,pfscan_CUB_dom,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	OVCH1	HGNC	ENSG00000187950				124	0	0	105	6	5.40541
TMTC1	0	genome.wustl.edu	37	12	29665046	29665046	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	29665046	29665046	C	G	SNP	TMTC1	ENST00000256062	human	ensembl	74_37	-1	known	missense	c.2114	p.R705T	0.004	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR_1,pfam_TPR_2,pfam_DUF1736,pfam_PIK-rel_kinase_FAT,pfam_TPR-3,smart_HAT,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TMTC1	HGNC	ENSG00000133687				185	0	0	154	18	10.4651
IPO8	0	genome.wustl.edu	37	12	30805933	30805933	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	30805933	30805933	A	G	SNP	IPO8	ENST00000256079	human	ensembl	74_37	-1	known	missense	c.2042	p.V681A	1.000	superfamily_ARM-type_fold	pfam_Importin-beta_N,pfam_Cse1,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	IPO8	HGNC	ENSG00000133704				107	0	0	78	10	11.3636
CAPRIN2	0	genome.wustl.edu	37	12	30882246	30882246	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	30882246	30882246	C	T	SNP	CAPRIN2	ENST00000251071	human	ensembl	74_37	-1	known	missense	c.1118	p.R373H	1.000	NULL	pfam_Caprin-1_C,pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	CAPRIN2	HGNC	ENSG00000110888				86	0	0	47	12	20.339
CAPRIN2	0	genome.wustl.edu	37	12	30887988	30887988	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	30887988	30887988	A	G	SNP	CAPRIN2	ENST00000251071	human	ensembl	74_37	-1	known	silent	c.723	p.N241	1.000	NULL	pfam_Caprin-1_C,pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	CAPRIN2	HGNC	ENSG00000110888				241	0	0	170	14	7.6087
SYT10	0	genome.wustl.edu	37	12	33592387	33592387	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	33592387	33592387	C	T	SNP	SYT10	ENST00000228567	human	ensembl	74_37	-1	known	missense	c.71	p.C24Y	1.000	NULL	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom,prints_Synaptotagmin,prints_C2_dom	-	no_errors	SYT10	HGNC	ENSG00000110975				154	0	0	123	32	20.6452
TSPAN9	0	genome.wustl.edu	37	12	3388233	3388233	+	Splice_Site	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	3388233	3388233	G	A	SNP	TSPAN9	ENST00000011898	human	ensembl	74_37	+1	known	splice_site	c.330+1	e3+1	1.000	-	-	-	no_errors	TSPAN9	HGNC	ENSG00000011105				94	0	0	71	8	10.1266
KIF21A	0	genome.wustl.edu	37	12	39751199	39751199	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	39751199	39751199	T	A	SNP	KIF21A	ENST00000395670	human	ensembl	74_37	-1	known	missense	c.1256	p.N419I	1.000	NULL	pfam_Kinesin_motor_dom,pfam_WD40_repeat,superfamily_P-loop_NTPase,superfamily_WD40_repeat_dom,superfamily_Prefoldin,superfamily_ARM-type_fold,smart_Kinesin_motor_dom,smart_WD40_repeat,pfscan_Kinesin_motor_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Kinesin_motor_dom	-	no_errors	KIF21A	HGNC	ENSG00000139116				122	0	0	75	5	6.25
LRRK2	0	genome.wustl.edu	37	12	40677882	40677882	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	40677882	40677882	C	A	SNP	LRRK2	ENST00000298910	human	ensembl	74_37	+1	known	missense	c.2447	p.S816Y	0.919	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_MIRO-like,pfam_Small_GTPase,pfam_Leu-rich_rpt,pfam_Small_GTPase_ARF/SAR,superfamily_Kinase-like_dom,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,superfamily_WD40_repeat_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Small_GTPase_Rab_type,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,prints_Small_GTPase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	LRRK2	HGNC	ENSG00000188906				133	0	0	82	9	9.89011
CNTN1	0	genome.wustl.edu	37	12	41327636	41327636	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	41327636	41327636	A	G	SNP	CNTN1	ENST00000347616	human	ensembl	74_37	+1	known	missense	c.941	p.N314S	1.000	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CNTN1	HGNC	ENSG00000018236				93	0	0	78	5	6.0241
CNTN1	0	genome.wustl.edu	37	12	41374737	41374737	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	41374737	41374737	A	G	SNP	CNTN1	ENST00000347616	human	ensembl	74_37	+1	known	missense	c.1831	p.R611G	0.956	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CNTN1	HGNC	ENSG00000018236				204	0	0	154	11	6.66667
PDZRN4	0	genome.wustl.edu	37	12	41961604	41961604	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	41961604	41961604	A	G	SNP	PDZRN4	ENST00000402685	human	ensembl	74_37	+1	known	missense	c.1487	p.E496G	1.000	NULL	pfam_PDZ,superfamily_PDZ,superfamily_TRAF-like,smart_Znf_RING,smart_PDZ,pfscan_PDZ,pfscan_Znf_RING	-	no_errors	PDZRN4	HGNC	ENSG00000165966				53	0	0	39	5	11.3636
GXYLT1	0	genome.wustl.edu	37	12	42512919	42512919	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	42512919	42512919	A	G	SNP	GXYLT1	ENST00000398675	human	ensembl	74_37	-1	known	silent	c.369	p.C123	1.000	NULL	pfam_Glyco_trans_8	-	no_errors	GXYLT1	HGNC	ENSG00000151233				133	0	0	80	9	10.1124
PPHLN1	0	genome.wustl.edu	37	12	42745851	42745851	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	42745851	42745851	A	G	SNP	PPHLN1	ENST00000395568	human	ensembl	74_37	+1	known	silent	c.237	p.G79	1.000	NULL	NULL	-	no_errors	PPHLN1	HGNC	ENSG00000134283				58	0	0	51	4	7.27273
ADAMTS20	0	genome.wustl.edu	37	12	43846182	43846182	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	43846182	43846182	A	G	SNP	ADAMTS20	ENST00000389420	human	ensembl	74_37	-1	known	silent	c.1974	p.C658	1.000	NULL	pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS20	HGNC	ENSG00000173157				126	0	0	84	6	6.66667
TMEM117	0	genome.wustl.edu	37	12	44338087	44338087	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	44338087	44338087	T	C	SNP	TMEM117	ENST00000266534	human	ensembl	74_37	+1	known	missense	c.352	p.F118L	1.000	NULL	NULL	-	no_errors	TMEM117	HGNC	ENSG00000139173				119	0	0	106	15	12.3967
TMEM117	0	genome.wustl.edu	37	12	44782428	44782428	+	Silent	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	44782428	44782428	G	T	SNP	TMEM117	ENST00000266534	human	ensembl	74_37	+1	known	silent	c.1518	p.T506	0.000	NULL	NULL	-	no_errors	TMEM117	HGNC	ENSG00000139173				157	0	0	131	9	6.42857
C12orf4	0	genome.wustl.edu	37	12	4599042	4599042	+	Nonsense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	4599042	4599042	A	T	SNP	C12orf4	ENST00000261250	human	ensembl	74_37	-1	known	nonsense	c.1590	p.Y530*	0.998	pfam_DUF2362	pfam_DUF2362	-	no_errors	C12orf4	HGNC	ENSG00000047621				96	0	0	72	7	8.86076
ARID2	0	genome.wustl.edu	37	12	46231180	46231180	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	46231180	46231180	A	T	SNP	ARID2	ENST00000334344	human	ensembl	74_37	+1	known	missense	c.1100	p.D367V	1.000	superfamily_ARM-type_fold	pfam_ARID/BRIGHT_DNA-bd,pfam_DNA-bd_RFX,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID2	HGNC	ENSG00000189079				153	0	0	80	25	23.8095
ARID2	0	genome.wustl.edu	37	12	46245033	46245033	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	46245033	46245033	C	T	SNP	ARID2	ENST00000334344	human	ensembl	74_37	+1	known	nonsense	c.3127	p.Q1043*	0.998	NULL	pfam_ARID/BRIGHT_DNA-bd,pfam_DNA-bd_RFX,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID2	HGNC	ENSG00000189079				117	0	0	94	8	7.84314
ARID2	0	genome.wustl.edu	37	12	46245055	46245055	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	46245055	46245055	G	C	SNP	ARID2	ENST00000334344	human	ensembl	74_37	+1	known	missense	c.3149	p.G1050A	0.990	NULL	pfam_ARID/BRIGHT_DNA-bd,pfam_DNA-bd_RFX,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID2	HGNC	ENSG00000189079				139	0	0	102	7	6.42202
ARID2	0	genome.wustl.edu	37	12	46246402	46246402	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	46246402	46246402	T	C	SNP	ARID2	ENST00000334344	human	ensembl	74_37	+1	known	missense	c.4496	p.L1499P	0.946	NULL	pfam_ARID/BRIGHT_DNA-bd,pfam_DNA-bd_RFX,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID2	HGNC	ENSG00000189079				125	0	0	112	6	5.08475
SCAF11	0	genome.wustl.edu	37	12	46320326	46320326	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	46320326	46320326	T	C	SNP	SCAF11	ENST00000369367	human	ensembl	74_37	-1	known	missense	c.3158	p.E1053G	1.000	NULL	smart_Znf_RING,pfscan_Znf_RING	-	no_errors	SCAF11	HGNC	ENSG00000139218				119	0	0	102	9	8.10811
SCAF11	0	genome.wustl.edu	37	12	46321589	46321589	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	46321589	46321589	A	G	SNP	SCAF11	ENST00000369367	human	ensembl	74_37	-1	known	missense	c.1895	p.V632A	0.000	NULL	smart_Znf_RING,pfscan_Znf_RING	-	no_errors	SCAF11	HGNC	ENSG00000139218				111	0	0	82	8	8.88889
RAD51AP1	0	genome.wustl.edu	37	12	4654960	4654960	+	Silent	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	4654960	4654960	T	A	SNP	RAD51AP1	ENST00000228843	human	ensembl	74_37	+1	known	silent	c.222	p.G74	0.007	NULL	NULL	-	no_errors	RAD51AP1	HGNC	ENSG00000111247				391	1	0.255102	295	18	5.7508
SLC38A2	0	genome.wustl.edu	37	12	46756850	46756850	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	46756850	46756850	G	A	SNP	SLC38A2	ENST00000256689	human	ensembl	74_37	-1	known	missense	c.1133	p.A378V	1.000	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC38A2	HGNC	ENSG00000134294				74	0	0	59	7	10.6061
SLC38A2	0	genome.wustl.edu	37	12	46764393	46764393	+	Silent	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	46764393	46764393	G	T	SNP	SLC38A2	ENST00000256689	human	ensembl	74_37	-1	known	silent	c.216	p.S72	1.000	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC38A2	HGNC	ENSG00000134294				102	1	0.970874	72	5	6.49351
SLC38A4	0	genome.wustl.edu	37	12	47172470	47172470	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	47172470	47172470	C	T	SNP	SLC38A4	ENST00000266579	human	ensembl	74_37	-1	known	missense	c.807	p.M269I	0.275	NULL	pfam_AA_transpt_TM	-	no_errors	SLC38A4	HGNC	ENSG00000139209				87	0	0	94	10	9.61538
AKAP3	0	genome.wustl.edu	37	12	4735822	4735822	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	4735822	4735822	G	A	SNP	AKAP3	ENST00000228850	human	ensembl	74_37	-1	known	missense	c.2246	p.P749L	0.004	pfam_AKAP_110_C,smart_AKAP_110	pfam_AKAP_110_C,pfam_RII_binding_1,smart_AKAP_110	-	no_errors	AKAP3	HGNC	ENSG00000111254				121	0	0	115	10	8
COL2A1	0	genome.wustl.edu	37	12	48367266	48367266	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	48367266	48367266	A	G	SNP	COL2A1	ENST00000380518	human	ensembl	74_37	-1	known	missense	c.4388	p.I1463T	1.000	pfam_Fib_collagen_C,smart_Fib_collagen_C	pfam_Collagen,pfam_Fib_collagen_C,pfam_VWF_C,superfamily_Fibrinogen_a/b/g_C_dom,smart_VWF_C,smart_Fib_collagen_C,pfscan_VWF_C	-	no_errors	COL2A1	HGNC	ENSG00000139219				103	0	0	93	12	11.4286
COL2A1	0	genome.wustl.edu	37	12	48369119	48369119	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	48369119	48369119	G	A	SNP	COL2A1	ENST00000380518	human	ensembl	74_37	-1	known	silent	c.3867	p.C1289	1.000	pfam_Fib_collagen_C,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fib_collagen_C	pfam_Collagen,pfam_Fib_collagen_C,pfam_VWF_C,superfamily_Fibrinogen_a/b/g_C_dom,smart_VWF_C,smart_Fib_collagen_C,pfscan_VWF_C	-	no_errors	COL2A1	HGNC	ENSG00000139219				48	0	0	50	5	9.09091
SENP1	0	genome.wustl.edu	37	12	48442746	48442746	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	48442746	48442746	A	G	SNP	SENP1	ENST00000004980	human	ensembl	74_37	-1	known	missense	c.1577	p.V526A	0.999	pfam_Peptidase_C48,pfscan_Peptidase_C48	pfam_Peptidase_C48,pfscan_Peptidase_C48	-	no_errors	SENP1	HGNC	ENSG00000079387				48	0	0	44	4	8.33333
SENP1	0	genome.wustl.edu	37	12	48457539	48457539	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	48457539	48457539	C	T	SNP	SENP1	ENST00000004980	human	ensembl	74_37	-1	known	missense	c.1361	p.R454H	1.000	pfscan_Peptidase_C48	pfam_Peptidase_C48,pfscan_Peptidase_C48	-	no_errors	SENP1	HGNC	ENSG00000079387				77	0	0	67	4	5.6338
PFKM	0	genome.wustl.edu	37	12	48535570	48535570	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	48535570	48535570	A	C	SNP	PFKM	ENST00000312352	human	ensembl	74_37	+1	known	missense	c.1460	p.K487T	1.000	pfam_Phosphofructokinase_dom,superfamily_Phosphofructokinase_dom,pirsf_6-phosphofructokinase_euk,tigrfam_6-phosphofructokinase_euk	pfam_Phosphofructokinase_dom,superfamily_Phosphofructokinase_dom,pirsf_6-phosphofructokinase_euk,prints_Phosphofructokinase,tigrfam_6-phosphofructokinase_euk	-	no_errors	PFKM	HGNC	ENSG00000152556				155	0	0	121	29	19.3333
KCNA6	0	genome.wustl.edu	37	12	4919490	4919490	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	4919490	4919490	G	A	SNP	KCNA6	ENST00000280684	human	ensembl	74_37	+1	known	missense	c.283	p.A95T	1.000	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.6,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA6	HGNC	ENSG00000151079				90	0	0	82	20	19.6078
DDX23	0	genome.wustl.edu	37	12	49224275	49224275	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	49224275	49224275	G	A	SNP	DDX23	ENST00000308025	human	ensembl	74_37	-1	known	missense	c.2440	p.R814W	1.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX23	HGNC	ENSG00000174243				66	0	0	48	16	25
FKBP11	0	genome.wustl.edu	37	12	49315835	49315835	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	49315835	49315835	C	T	SNP	FKBP11	ENST00000550765	human	ensembl	74_37	-1	known	missense	c.538	p.A180T	1.000	NULL	pfam_PPIase_FKBP_dom,pfscan_PPIase_FKBP_dom	-	no_errors	FKBP11	HGNC	ENSG00000134285				113	0	0	93	12	11.4286
KMT2D	0	genome.wustl.edu	37	12	49420243	49420243	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	49420243	49420243	A	G	SNP	KMT2D	ENST00000301067	human	ensembl	74_37	-1	known	missense	c.15506	p.I5169T	1.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2D	HGNC	ENSG00000167548				35	0	0	46	6	11.5385
KMT2D	0	genome.wustl.edu	37	12	49420661	49420661	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	49420661	49420661	G	A	SNP	KMT2D	ENST00000301067	human	ensembl	74_37	-1	known	missense	c.15088	p.R5030C	1.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2D	HGNC	ENSG00000167548				64	0	0	56	11	16.4179
DHH	0	genome.wustl.edu	37	12	49488108	49488108	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	49488108	49488108	G	A	SNP	DHH	ENST00000266991	human	ensembl	74_37	-1	known	missense	c.188	p.A63V	0.577	pfam_Hedgehog_signaling_dom,superfamily_Hedgehog_sig/DD-Pept_Zn-bd_dom,pirsf_Hedgehog	pfam_Hedgehog_signaling_dom,pfam_Hint_dom,superfamily_Hedgehog_sig/DD-Pept_Zn-bd_dom,smart_Hint_dom_N,smart_Hint_dom_C,pirsf_Hedgehog,prints_Hedgehog	-	no_errors	DHH	HGNC	ENSG00000139549				54	0	0	45	20	30.7692
TUBA1B	0	genome.wustl.edu	37	12	49523058	49523058	+	Silent	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	49523058	49523058	G	T	SNP	TUBA1B	ENST00000336023	human	ensembl	74_37	-1	known	silent	c.342	p.I114	1.000	pfam_Tubulin_FtsZ_GTPase,superfamily_Tubulin_FtsZ_GTPase,smart_Tubulin_FtsZ_GTPase,prints_Tubulin,prints_Epsilon_tubulin,prints_Beta_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Beta_tubulin,prints_Delta_tubulin	-	no_errors	TUBA1B	HGNC	ENSG00000123416				178	0	0	166	10	5.68182
TUBA1A	0	genome.wustl.edu	37	12	49579012	49579012	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	49579012	49579012	G	A	SNP	TUBA1A	ENST00000301071	human	ensembl	74_37	-1	known	silent	c.1137	p.S379	1.000	pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tub_FtsZ_C,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin,prints_Delta_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin,prints_Beta_tubulin	-	no_errors	TUBA1A	HGNC	ENSG00000167552				70	0	0	61	6	8.95522
C1QL4	0	genome.wustl.edu	37	12	49726989	49726989	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	49726989	49726989	C	T	SNP	C1QL4	ENST00000334221	human	ensembl	74_37	-1	known	missense	c.565	p.A189T	1.000	pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q	pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	C1QL4	HGNC	ENSG00000186897				37	0	0	30	3	9.09091
KCNH3	0	genome.wustl.edu	37	12	49937785	49937785	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	49937785	49937785	C	T	SNP	KCNH3	ENST00000257981	human	ensembl	74_37	+1	known	missense	c.911	p.T304I	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,pfam_cNMP-bd_dom,pfam_PAS_4,pfam_PAS_fold,pfam_PAS_fold_3,superfamily_cNMP-bd-like,superfamily_PAS,smart_PAC,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ELK,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,pfscan_PAS,pfscan_PAS-assoc_C,tigrfam_PAS	-	no_errors	KCNH3	HGNC	ENSG00000135519				125	0	0	116	14	10.7692
KCNH3	0	genome.wustl.edu	37	12	49944111	49944111	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	49944111	49944111	A	G	SNP	KCNH3	ENST00000257981	human	ensembl	74_37	+1	known	silent	c.1917	p.L639	1.000	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,pfam_cNMP-bd_dom,pfam_PAS_4,pfam_PAS_fold,pfam_PAS_fold_3,superfamily_cNMP-bd-like,superfamily_PAS,smart_PAC,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ELK,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,pfscan_PAS,pfscan_PAS-assoc_C,tigrfam_PAS	-	no_errors	KCNH3	HGNC	ENSG00000135519				73	0	0	71	4	5.33333
MCRS1	0	genome.wustl.edu	37	12	49953259	49953259	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	49953259	49953259	G	A	SNP	MCRS1	ENST00000357123	human	ensembl	74_37	-1	known	missense	c.1102	p.R368W	1.000	superfamily_SMAD_FHA_domain	pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	MCRS1	HGNC	ENSG00000187778				66	0	0	80	9	10.1124
MCRS1	0	genome.wustl.edu	37	12	49958615	49958615	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	49958615	49958615	G	A	SNP	MCRS1	ENST00000357123	human	ensembl	74_37	-1	known	missense	c.391	p.R131C	1.000	NULL	pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	MCRS1	HGNC	ENSG00000187778				106	0	0	95	8	7.76699
FMNL3	0	genome.wustl.edu	37	12	50040738	50040738	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	50040738	50040738	G	A	SNP	FMNL3	ENST00000293590	human	ensembl	74_37	-1	known	missense	c.2926	p.R976W	1.000	smart_FH2_Formin	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,superfamily_ARM-type_fold,smart_FH2_Formin	-	no_errors	FMNL3	HGNC	ENSG00000161791				60	0	0	65	5	7.14286
FMNL3	0	genome.wustl.edu	37	12	50041555	50041555	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	50041555	50041555	G	A	SNP	FMNL3	ENST00000293590	human	ensembl	74_37	-1	known	silent	c.2709	p.G903	0.334	pfam_FH2_Formin,smart_FH2_Formin	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,superfamily_ARM-type_fold,smart_FH2_Formin	-	no_errors	FMNL3	HGNC	ENSG00000161791				64	0	0	47	4	7.84314
FMNL3	0	genome.wustl.edu	37	12	50044495	50044495	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	50044495	50044495	C	T	SNP	FMNL3	ENST00000293590	human	ensembl	74_37	-1	known	missense	c.1964	p.G655D	1.000	pfam_FH2_Formin,smart_FH2_Formin	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,superfamily_ARM-type_fold,smart_FH2_Formin	-	no_errors	FMNL3	HGNC	ENSG00000161791				83	0	0	74	5	6.32911
NCKAP5L	0	genome.wustl.edu	37	12	50190678	50190678	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	50190678	50190678	G	C	SNP	NCKAP5L	ENST00000335999	human	ensembl	74_37	-1	known	missense	c.965	p.A322G	0.941	NULL	NULL	-	no_errors	NCKAP5L	HGNC	ENSG00000167566				23	0	0	20	9	31.0345
KCNA1	0	genome.wustl.edu	37	12	5020846	5020846	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	5020846	5020846	G	A	SNP	KCNA1	ENST00000382545	human	ensembl	74_37	+1	known	missense	c.302	p.R101H	1.000	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv1.1,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv1.3	-	no_errors	KCNA1	HGNC	ENSG00000111262				72	0	0	70	7	9.09091
KCNA1	0	genome.wustl.edu	37	12	5021176	5021176	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	5021176	5021176	T	C	SNP	KCNA1	ENST00000382545	human	ensembl	74_37	+1	known	missense	c.632	p.I211T	0.113	prints_K_chnl_volt-dep_Kv1.1	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv1.1,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv1.3	-	no_errors	KCNA1	HGNC	ENSG00000111262				52	0	0	42	10	19.2308
FAIM2	0	genome.wustl.edu	37	12	50291301	50291301	+	Splice_Site	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	50291301	50291301	C	T	SNP	FAIM2	ENST00000320634	human	ensembl	74_37	-1	known	splice_site	c.380+1	e4+1	1.000	-	-	-	no_errors	FAIM2	HGNC	ENSG00000135472				45	0	0	29	6	17.1429
RACGAP1	0	genome.wustl.edu	37	12	50399142	50399142	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	50399142	50399142	T	C	SNP	RACGAP1	ENST00000312377	human	ensembl	74_37	-1	known	missense	c.322	p.M108V	1.000	NULL	pfam_RhoGAP_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Rho_GTPase_activation_prot,superfamily_Regulat_G_prot_signal_superfam,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom	-	no_errors	RACGAP1	HGNC	ENSG00000161800				72	0	0	59	6	9.23077
ASIC1	0	genome.wustl.edu	37	12	50475044	50475044	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	50475044	50475044	T	C	SNP	ASIC1	ENST00000228468	human	ensembl	74_37	+1	known	missense	c.1517	p.V506A	1.000	NULL	pfam_Na+channel_ASC,prints_Na+channel_ASC	-	no_errors	ASIC1	HGNC	ENSG00000110881				15	0	0	11	2	15.3846
DIP2B	0	genome.wustl.edu	37	12	51086792	51086792	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	51086792	51086792	T	C	SNP	DIP2B	ENST00000301180	human	ensembl	74_37	+1	known	missense	c.1715	p.F572S	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig,pfam_DMAP1-bd	-	no_errors	DIP2B	HGNC	ENSG00000066084				86	0	0	77	5	6.09756
KCNA5	0	genome.wustl.edu	37	12	5153531	5153531	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	5153531	5153531	C	T	SNP	KCNA5	ENST00000252321	human	ensembl	74_37	+1	known	missense	c.218	p.P73L	0.054	NULL	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,pfam_PKD1_2_channel,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.5,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA5	HGNC	ENSG00000130037				8	0	0	3	3	50
KCNA5	0	genome.wustl.edu	37	12	5154130	5154130	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	5154130	5154130	C	T	SNP	KCNA5	ENST00000252321	human	ensembl	74_37	+1	known	missense	c.817	p.P273S	1.000	prints_K_chnl_volt-dep_Kv1	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,pfam_PKD1_2_channel,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.5,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA5	HGNC	ENSG00000130037				113	0	0	99	19	16.1017
KCNA5	0	genome.wustl.edu	37	12	5154984	5154984	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	5154984	5154984	C	T	SNP	KCNA5	ENST00000252321	human	ensembl	74_37	+1	known	silent	c.1671	p.S557	0.871	NULL	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,pfam_PKD1_2_channel,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.5,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA5	HGNC	ENSG00000130037				35	0	0	35	11	23.913
SCN8A	0	genome.wustl.edu	37	12	52078069	52078069	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	52078069	52078069	A	T	SNP	SCN8A	ENST00000354534	human	ensembl	74_37	+1	known	missense	c.388	p.I130L	1.000	NULL	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,prints_Na_channel_a8su,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN8A	HGNC	ENSG00000196876				72	0	0	47	4	7.84314
ACVRL1	0	genome.wustl.edu	37	12	52308233	52308233	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	52308233	52308233	C	T	SNP	ACVRL1	ENST00000550683	human	ensembl	74_37	+1	known	silent	c.678	p.R226	0.985	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_TGF_beta_rcpt_GS,superfamily_Kinase-like_dom,smart_TGF_beta_rcpt_GS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_TGFB_receptor	-	no_errors	ACVRL1	HGNC	ENSG00000139567				57	0	0	42	3	6.66667
GRASP	0	genome.wustl.edu	37	12	52407946	52407946	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	52407946	52407946	T	C	SNP	GRASP	ENST00000293662	human	ensembl	74_37	+1	known	missense	c.643	p.Y215H	1.000	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	GRASP	HGNC	ENSG00000161835				13	0	0	14	4	22.2222
KRT6B	0	genome.wustl.edu	37	12	52841348	52841348	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	52841348	52841348	G	A	SNP	KRT6B	ENST00000252252	human	ensembl	74_37	-1	known	silent	c.1434	p.G478	0.786	NULL	pfam_IF,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT6B	HGNC	ENSG00000185479				57	0	0	39	17	30.3571
KRT6C	0	genome.wustl.edu	37	12	52865209	52865209	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	52865209	52865209	T	C	SNP	KRT6C	ENST00000252250	human	ensembl	74_37	-1	known	missense	c.908	p.D303G	0.995	pfam_IF	pfam_IF,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT6C	HGNC	ENSG00000170465				96	0	0	103	13	11.2069
KRT6C	0	genome.wustl.edu	37	12	52865984	52865984	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	52865984	52865984	C	T	SNP	KRT6C	ENST00000252250	human	ensembl	74_37	-1	known	silent	c.621	p.R207	0.385	pfam_IF	pfam_IF,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT6C	HGNC	ENSG00000170465				80	0	0	62	10	13.8889
KRT6A	0	genome.wustl.edu	37	12	52884922	52884922	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	52884922	52884922	C	T	SNP	KRT6A	ENST00000330722	human	ensembl	74_37	-1	known	missense	c.790	p.E264K	1.000	pfam_IF,prints_Keratin_II	pfam_IF,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT6A	HGNC	ENSG00000205420				104	0	0	78	8	9.30233
KRT2	0	genome.wustl.edu	37	12	53040608	53040608	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	53040608	53040608	T	C	SNP	KRT2	ENST00000309680	human	ensembl	74_37	-1	known	missense	c.1385	p.D462G	1.000	pfam_IF	pfam_IF,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT2	HGNC	ENSG00000172867				122	0	0	109	8	6.83761
KRT77	0	genome.wustl.edu	37	12	53086570	53086570	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	53086570	53086570	A	C	SNP	KRT77	ENST00000341809	human	ensembl	74_37	-1	known	missense	c.1175	p.L392R	1.000	pfam_IF,superfamily_Prefoldin	pfam_IF,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT77	HGNC	ENSG00000189182				55	0	0	53	8	13.1148
KRT76	0	genome.wustl.edu	37	12	53165877	53165877	+	Splice_Site	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	53165877	53165877	C	T	SNP	KRT76	ENST00000332411	human	ensembl	74_37	-1	known	splice_site	c.1137+1	e5+1	1.000	-	-	-	no_errors	KRT76	HGNC	ENSG00000185069				51	0	0	62	4	6.06061
KRT79	0	genome.wustl.edu	37	12	53227765	53227765	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	53227765	53227765	C	T	SNP	KRT79	ENST00000330553	human	ensembl	74_37	-1	known	missense	c.280	p.A94T	0.006	NULL	pfam_IF,superfamily_STAT_TF_coiled-coil,prints_Keratin_II	-	no_errors	KRT79	HGNC	ENSG00000185640				35	0	0	33	6	15.3846
MFSD5	0	genome.wustl.edu	37	12	53647656	53647656	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	53647656	53647656	C	T	SNP	MFSD5	ENST00000534842	human	ensembl	74_37	+1	known	missense	c.1358	p.A453V	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_DUF791,pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	MFSD5	HGNC	ENSG00000182544				144	0	0	116	9	7.2
MAP3K12	0	genome.wustl.edu	37	12	53879982	53879982	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	53879982	53879982	C	T	SNP	MAP3K12	ENST00000267079	human	ensembl	74_37	-1	known	missense	c.580	p.A194T	1.000	pirsf_MAP3K12_MAP3K13,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_MAP3K12_MAP3K13,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP3K12	HGNC	ENSG00000139625				51	0	0	38	6	13.6364
TARBP2	0	genome.wustl.edu	37	12	53899798	53899798	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	53899798	53899798	T	C	SNP	TARBP2	ENST00000266987	human	ensembl	74_37	+1	known	missense	c.967	p.C323R	1.000	smart_dsRNA-bd_dom,pfscan_dsRNA-bd_dom	pfam_dsRNA-bd_dom,smart_dsRNA-bd_dom,pfscan_dsRNA-bd_dom	-	no_errors	TARBP2	HGNC	ENSG00000139546				52	0	0	47	3	6
TARBP2	0	genome.wustl.edu	37	12	53899914	53899914	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	53899914	53899914	C	T	SNP	TARBP2	ENST00000266987	human	ensembl	74_37	+1	known	silent	c.1083	p.I361	1.000	pfscan_dsRNA-bd_dom	pfam_dsRNA-bd_dom,smart_dsRNA-bd_dom,pfscan_dsRNA-bd_dom	-	no_errors	TARBP2	HGNC	ENSG00000139546				56	0	0	25	12	32.4324
NPFF	0	genome.wustl.edu	37	12	53901178	53901178	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	53901178	53901178	C	A	SNP	NPFF	ENST00000267017	human	ensembl	74_37	-1	known	missense	c.81	p.Q27H	0.000	pirsf_FMRFamid-related_peptide	pirsf_FMRFamid-related_peptide,prints_FMRFamid-related_peptide	-	no_errors	NPFF	HGNC	ENSG00000139574				68	0	0	59	8	11.9403
ATP5G2	0	genome.wustl.edu	37	12	54063713	54063713	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	54063713	54063713	A	G	SNP	ATP5G2	ENST00000394349	human	ensembl	74_37	-1	known	missense	c.230	p.L77P	1.000	NULL	pfam_ATPase_proteolipid_c_like_dom,superfamily_ATPase_proteolipid_c_like_dom,prints_ATPase_F0-cplx_csu	-	no_errors	ATP5G2	HGNC	ENSG00000135390				78	0	0	77	5	6.09756
HOXC12	0	genome.wustl.edu	37	12	54348796	54348796	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	54348796	54348796	A	G	SNP	HOXC12	ENST00000243103	human	ensembl	74_37	+1	known	missense	c.83	p.N28S	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	HOXC12	HGNC	ENSG00000123407				25	0	0	27	3	10
ITGA5	0	genome.wustl.edu	37	12	54797044	54797044	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	54797044	54797044	G	A	SNP	ITGA5	ENST00000293379	human	ensembl	74_37	-1	known	missense	c.1841	p.P614L	0.841	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA5	HGNC	ENSG00000161638				206	0	0	201	15	6.94444
NCKAP1L	0	genome.wustl.edu	37	12	54922129	54922129	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	54922129	54922129	A	T	SNP	NCKAP1L	ENST00000293373	human	ensembl	74_37	+1	known	missense	c.2474	p.N825I	0.997	pfam_Nck-associated_protein-1	pfam_Nck-associated_protein-1,superfamily_Nucl_hormone_rcpt_ligand-bd	-	no_errors	NCKAP1L	HGNC	ENSG00000123338				150	0	0	144	16	10
PDE1B	0	genome.wustl.edu	37	12	54968964	54968964	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	54968964	54968964	C	T	SNP	PDE1B	ENST00000243052	human	ensembl	74_37	+1	known	missense	c.1147	p.R383C	1.000	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom,prints_PDEase	pfam_PDEase_catalytic_dom,pfam_PDEase_N,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE1B	HGNC	ENSG00000123360				92	0	0	91	21	18.75
PPP1R1A	0	genome.wustl.edu	37	12	54974788	54974788	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	54974788	54974788	T	C	SNP	PPP1R1A	ENST00000547431	human	ensembl	74_37	-1	novel	missense	c.230	p.N77S	0.548	pfam_PPI_1DARPP-32	pfam_PPI_1DARPP-32	-	no_errors	PPP1R1A	HGNC	ENSG00000135447				235	0	0	212	15	6.60793
OR6C74	0	genome.wustl.edu	37	12	55641092	55641092	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	55641092	55641092	A	G	SNP	OR6C74	ENST00000343870	human	ensembl	74_37	+1	known	silent	c.21	p.V7	0.000	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6C74	HGNC	ENSG00000197706				149	0	0	112	12	9.67742
OR6C74	0	genome.wustl.edu	37	12	55641717	55641717	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	55641717	55641717	T	C	SNP	OR6C74	ENST00000343870	human	ensembl	74_37	+1	known	missense	c.646	p.Y216H	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6C74	HGNC	ENSG00000197706				90	0	0	76	6	7.31707
OR6C1	0	genome.wustl.edu	37	12	55714599	55714599	+	Silent	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	55714599	55714599	A	C	SNP	OR6C1	ENST00000379668	human	ensembl	74_37	+1	known	silent	c.216	p.T72	0.999	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6C1	HGNC	ENSG00000205330				78	0	0	63	8	11.2676
OR6C1	0	genome.wustl.edu	37	12	55715169	55715169	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	55715169	55715169	A	G	SNP	OR6C1	ENST00000379668	human	ensembl	74_37	+1	known	silent	c.786	p.A262	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6C1	HGNC	ENSG00000205330				144	0	0	117	9	7.14286
OR6C1	0	genome.wustl.edu	37	12	55715233	55715233	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	55715233	55715233	A	G	SNP	OR6C1	ENST00000379668	human	ensembl	74_37	+1	known	missense	c.850	p.N284D	0.996	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6C1	HGNC	ENSG00000205330				168	0	0	110	28	20.2899
BLOC1S1	0	genome.wustl.edu	37	12	56112932	56112932	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	56112932	56112932	G	T	SNP	BLOC1S1	ENST00000548925	human	ensembl	74_37	+1	known	missense	c.276	p.Q92H	1.000	pfam_GCN5L1	pfam_GCN5L1	-	no_errors	BLOC1S1	HGNC	ENSG00000135441				33	0	0	40	5	11.1111
RDH5	0	genome.wustl.edu	37	12	56115638	56115638	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	56115638	56115638	T	A	SNP	RDH5	ENST00000257895	human	ensembl	74_37	+1	known	missense	c.476	p.I159N	0.993	pfam_DH_sc/Rdtase_SDR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	pfam_DH_sc/Rdtase_SDR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR,prints_DHB_DH	-	no_errors	RDH5	HGNC	ENSG00000135437				36	0	0	41	5	10.8696
RAB5B	0	genome.wustl.edu	37	12	56384499	56384499	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	56384499	56384499	G	A	SNP	RAB5B	ENST00000360299	human	ensembl	74_37	+1	known	missense	c.349	p.E117K	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB5B	HGNC	ENSG00000111540				190	0	0	178	21	10.5528
ERBB3	0	genome.wustl.edu	37	12	56478899	56478899	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	56478899	56478899	G	A	SNP	ERBB3	ENST00000267101	human	ensembl	74_37	+1	known	missense	c.355	p.V119I	0.950	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_EGF_rcpt_L	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Furin-like_Cys-rich_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	ERBB3	HGNC	ENSG00000065361				149	0	0	113	27	19.2857
ESYT1	0	genome.wustl.edu	37	12	56526307	56526307	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	56526307	56526307	C	T	SNP	ESYT1	ENST00000267113	human	ensembl	74_37	+1	known	missense	c.1087	p.R363C	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,prints_C2_dom,pfscan_C2_dom	-	no_errors	ESYT1	HGNC	ENSG00000139641				119	0	0	96	13	11.9266
ESYT1	0	genome.wustl.edu	37	12	56530569	56530569	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	56530569	56530569	G	A	SNP	ESYT1	ENST00000267113	human	ensembl	74_37	+1	known	silent	c.1704	p.T568	0.278	superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,prints_C2_dom,pfscan_C2_dom	-	no_errors	ESYT1	HGNC	ENSG00000139641				55	0	0	54	5	8.47458
SLC39A5	0	genome.wustl.edu	37	12	56625260	56625260	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	56625260	56625260	G	T	SNP	SLC39A5	ENST00000266980	human	ensembl	74_37	+1	known	missense	c.202	p.G68C	1.000	NULL	pfam_ZIP	-	no_errors	SLC39A5	HGNC	ENSG00000139540				67	0	0	93	10	9.70874
PAN2	0	genome.wustl.edu	37	12	56719213	56719213	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	56719213	56719213	T	C	SNP	PAN2	ENST00000425394	human	ensembl	74_37	-1	known	missense	c.1385	p.D462G	1.000	NULL	pfam_Exonuclease_RNaseT/DNA_pol3,pfam_Peptidase_C19/C67,superfamily_RNaseH-like_dom,superfamily_WD40_repeat_dom,smart_Exonuclease,pfscan_Peptidase_C19/C67	-	no_errors	PAN2	HGNC	ENSG00000135473				191	0	0	144	14	8.86076
TIMELESS	0	genome.wustl.edu	37	12	56811707	56811707	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	56811707	56811707	A	G	SNP	TIMELESS	ENST00000553532	human	ensembl	74_37	-1	known	silent	c.3540	p.D1180	0.000	NULL	pfam_TIMELESS_C,pfam_Timeless	-	no_errors	TIMELESS	HGNC	ENSG00000111602				203	0	0	173	21	10.8247
TIMELESS	0	genome.wustl.edu	37	12	56822332	56822332	+	Splice_Site	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	56822332	56822332	C	T	SNP	TIMELESS	ENST00000553532	human	ensembl	74_37	-1	known	splice_site	c.1408+1	e11+1	1.000	-	-	-	no_errors	TIMELESS	HGNC	ENSG00000111602				48	0	0	28	12	30
NACA	0	genome.wustl.edu	37	12	57113163	57113163	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	57113163	57113163	G	A	SNP	NACA	ENST00000454682	human	ensembl	74_37	-1	known	silent	c.2151	p.T717	0.000	NULL	pfam_Nas_poly-pep-assoc_cplx_dom,superfamily_UBA-like,pfscan_Nas_poly-pep-assoc_cplx_dom	-	no_errors	NACA	HGNC	ENSG00000196531				36	0	0	17	6	26.087
ANO2	0	genome.wustl.edu	37	12	5744509	5744509	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	5744509	5744509	G	A	SNP	ANO2	ENST00000356134	human	ensembl	74_37	-1	known	missense	c.1628	p.A543V	0.996	pfam_Anoctamin	pfam_Anoctamin	-	no_errors	ANO2	HGNC	ENSG00000047617				37	0	0	35	8	18.6047
TMEM194A	0	genome.wustl.edu	37	12	57466637	57466637	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	57466637	57466637	G	A	SNP	TMEM194A	ENST00000300128	human	ensembl	74_37	-1	known	silent	c.186	p.A62	0.005	NULL	pfam_TMEM194	-	no_errors	TMEM194A	HGNC	ENSG00000166881				104	0	0	69	17	19.7674
LRP1	0	genome.wustl.edu	37	12	57550055	57550055	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	57550055	57550055	G	A	SNP	LRP1	ENST00000243077	human	ensembl	74_37	+1	known	missense	c.1406	p.R469H	1.000	NULL	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1	HGNC	ENSG00000123384				52	0	0	33	8	19.5122
LRP1	0	genome.wustl.edu	37	12	57553773	57553773	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	57553773	57553773	T	C	SNP	LRP1	ENST00000243077	human	ensembl	74_37	+1	known	missense	c.1964	p.V655A	1.000	pfam_LDLR_classB_rpt,smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1	HGNC	ENSG00000123384				38	0	0	26	5	16.129
LRP1	0	genome.wustl.edu	37	12	57561277	57561277	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	57561277	57561277	T	C	SNP	LRP1	ENST00000243077	human	ensembl	74_37	+1	known	missense	c.2965	p.C989R	1.000	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt,prints_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1	HGNC	ENSG00000123384				95	0	0	101	10	9.00901
LRP1	0	genome.wustl.edu	37	12	57573210	57573210	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	57573210	57573210	G	A	SNP	LRP1	ENST00000243077	human	ensembl	74_37	+1	known	missense	c.4837	p.D1613N	1.000	smart_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1	HGNC	ENSG00000123384				41	0	0	41	6	12.766
STAC3	0	genome.wustl.edu	37	12	57638744	57638744	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	57638744	57638744	G	A	SNP	STAC3	ENST00000557176	human	ensembl	74_37	-1	known	missense	c.50	p.T17I	0.999	NULL	NULL	-	no_errors	STAC3	HGNC	ENSG00000185482				148	0	0	144	9	5.88235
STAC3	0	genome.wustl.edu	37	12	57638988	57638988	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	57638988	57638988	C	A	SNP	STAC3	ENST00000332782	human	ensembl	74_37	-1	known	missense	c.610	p.A204S	1.000	NULL	pfam_SH3_2,pfam_SH3_domain,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_SH3_domain,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_SH3_domain,pfscan_SH3_domain,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_SH3_domain,prints_p67phox	-	no_errors	STAC3	HGNC	ENSG00000185482				118	0	0	110	7	5.98291
GLI1	0	genome.wustl.edu	37	12	57865375	57865375	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	57865375	57865375	G	A	SNP	GLI1	ENST00000228682	human	ensembl	74_37	+1	known	missense	c.2852	p.G951D	0.998	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI1	HGNC	ENSG00000111087				71	0	0	58	15	20.5479
MARS	0	genome.wustl.edu	37	12	57908808	57908808	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	57908808	57908808	C	T	SNP	MARS	ENST00000262027	human	ensembl	74_37	+1	known	missense	c.2171	p.P724L	1.000	superfamily_tRNAsynth_1a_anticodon-bd,tigrfam_Met-tRNA_synth	pfam_Methionyl/Leucyl_tRNA_Synth,pfam_WHEP-TRS,superfamily_tRNAsynth_1a_anticodon-bd,superfamily_Glutathione-S-Trfase_C-like,superfamily_S15_NS1_RNA-bd,superfamily_Thioredoxin-like_fold,pfscan_WHEP-TRS,prints_Met-tRNA_synth,tigrfam_Met-tRNA_synth	-	no_errors	MARS	HGNC	ENSG00000166986				64	0	0	63	9	12.5
KIF5A	0	genome.wustl.edu	37	12	57963431	57963431	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	57963431	57963431	C	T	SNP	KIF5A	ENST00000455537	human	ensembl	74_37	+1	known	missense	c.1082	p.A361V	0.994	superfamily_P-loop_NTPase	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF5A	HGNC	ENSG00000155980				60	0	0	56	9	13.8462
PIP4K2C	0	genome.wustl.edu	37	12	57994595	57994595	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	57994595	57994595	T	C	SNP	PIP4K2C	ENST00000354947	human	ensembl	74_37	+1	known	missense	c.815	p.F272S	1.000	pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub	pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub	-	no_errors	PIP4K2C	HGNC	ENSG00000166908				321	0	0	339	31	8.37838
OS9	0	genome.wustl.edu	37	12	58109590	58109590	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	58109590	58109590	C	T	SNP	OS9	ENST00000315970	human	ensembl	74_37	+1	known	silent	c.627	p.R209	0.000	superfamily_Man6P_isomerase_rcpt-bd_dom	pfam_PRKCSH,superfamily_Man6P_isomerase_rcpt-bd_dom	-	no_errors	OS9	HGNC	ENSG00000135506				64	0	0	47	5	9.61538
METTL21B	0	genome.wustl.edu	37	12	58174222	58174222	+	Silent	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	58174222	58174222	C	A	SNP	METTL21B	ENST00000300209	human	ensembl	74_37	+1	known	silent	c.474	p.T158	1.000	pfam_Nicotinamide_N-MeTfrase-like	pfam_Nicotinamide_N-MeTfrase-like	-	no_errors	METTL21B	HGNC	ENSG00000123427				57	0	0	60	6	9.09091
LRIG3	0	genome.wustl.edu	37	12	59282123	59282123	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	59282123	59282123	T	G	SNP	LRIG3	ENST00000320743	human	ensembl	74_37	-1	known	missense	c.935	p.K312T	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Immunoglobulin,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LRIG3	HGNC	ENSG00000139263				93	0	0	79	6	7.05882
MON2	0	genome.wustl.edu	37	12	62949898	62949898	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	62949898	62949898	C	T	SNP	MON2	ENST00000393630	human	ensembl	74_37	+1	known	missense	c.3338	p.A1113V	1.000	superfamily_ARM-type_fold	pfam_DUF1981_Sec7_assoc,superfamily_ARM-type_fold	-	no_errors	MON2	HGNC	ENSG00000061987				61	0	0	44	9	16.9811
CD9	0	genome.wustl.edu	37	12	6344710	6344710	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	6344710	6344710	A	G	SNP	CD9	ENST00000009180	human	ensembl	74_37	+1	known	silent	c.516	p.V172	0.000	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	CD9	HGNC	ENSG00000010278				46	0	0	52	3	5.45455
TNFRSF1A	0	genome.wustl.edu	37	12	6438737	6438737	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	6438737	6438737	C	T	SNP	TNFRSF1A	ENST00000162749	human	ensembl	74_37	-1	known	missense	c.1109	p.R370H	1.000	pfam_Death_domain,superfamily_DEATH-like_dom,smart_Death_domain,pfscan_Death_domain	pfam_TNFR/NGFR_Cys_rich_reg,pfam_Death_domain,superfamily_DEATH-like_dom,smart_TNFR/NGFR_Cys_rich_reg,smart_Death_domain,pfscan_Death_domain,pfscan_TNFR/NGFR_Cys_rich_reg,prints_TNFR_1A	-	no_errors	TNFRSF1A	HGNC	ENSG00000067182				15	0	0	13	5	27.7778
C12orf56	0	genome.wustl.edu	37	12	64746772	64746772	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	64746772	64746772	A	G	SNP	C12orf56	ENST00000333722	human	ensembl	74_37	-1	known	missense	c.317	p.I106T	0.900	NULL	NULL	-	no_errors	C12orf56	HGNC	ENSG00000185306				138	0	0	74	10	11.9048
TBK1	0	genome.wustl.edu	37	12	64878159	64878159	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	64878159	64878159	C	T	SNP	TBK1	ENST00000331710	human	ensembl	74_37	+1	known	nonsense	c.1069	p.R357*	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TBK1	HGNC	ENSG00000183735				74	0	0	47	5	9.61538
TBK1	0	genome.wustl.edu	37	12	64891510	64891510	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	64891510	64891510	A	G	SNP	TBK1	ENST00000331710	human	ensembl	74_37	+1	known	missense	c.2042	p.N681S	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TBK1	HGNC	ENSG00000183735				63	0	0	51	3	5.55556
GNS	0	genome.wustl.edu	37	12	65110533	65110533	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	65110533	65110533	T	G	SNP	GNS	ENST00000258145	human	ensembl	74_37	-1	known	missense	c.1647	p.K549N	0.628	pirsf_GlcNAc_6-SO4ase	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core,pirsf_GlcNAc_6-SO4ase	-	no_errors	GNS	HGNC	ENSG00000135677				70	0	0	49	4	7.54717
VAMP1	0	genome.wustl.edu	37	12	6574081	6574081	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	6574081	6574081	A	G	SNP	VAMP1	ENST00000396308	human	ensembl	74_37	-1	known	silent	c.315	p.C105	0.994	pfam_Synaptobrevin,pirsf_Synaptobrevin_met/fun,prints_Synaptobrevin	pfam_Synaptobrevin,pirsf_Synaptobrevin_met/fun,pfscan_Synaptobrevin,prints_Synaptobrevin	-	no_errors	VAMP1	HGNC	ENSG00000139190				181	0	0	154	13	7.78443
NCAPD2	0	genome.wustl.edu	37	12	6639009	6639009	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	6639009	6639009	G	A	SNP	NCAPD2	ENST00000315579	human	ensembl	74_37	+1	known	missense	c.3722	p.R1241H	0.973	pirsf_Condensin_cplx_su1	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_Condensin_cplx_su1	-	no_errors	NCAPD2	HGNC	ENSG00000010292				112	0	0	78	23	22.7723
IFFO1	0	genome.wustl.edu	37	12	6664471	6664471	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	6664471	6664471	T	C	SNP	IFFO1	ENST00000356896	human	ensembl	74_37	-1	known	missense	c.725	p.Y242C	1.000	NULL	NULL	-	no_errors	IFFO1	HGNC	ENSG00000010295				104	0	0	96	9	8.57143
CHD4	0	genome.wustl.edu	37	12	6692213	6692213	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	6692213	6692213	T	C	SNP	CHD4	ENST00000309577	human	ensembl	74_37	-1	known	missense	c.4211	p.D1404G	1.000	pfam_DUF1086	pfam_CHD_C2,pfam_DUF1086,pfam_SNF2_N,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,superfamily_Homeodomain-like,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD4	HGNC	ENSG00000111642				83	0	0	81	11	11.9565
CHD4	0	genome.wustl.edu	37	12	6696652	6696652	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	6696652	6696652	G	A	SNP	CHD4	ENST00000309577	human	ensembl	74_37	-1	known	silent	c.3777	p.D1259	1.000	NULL	pfam_CHD_C2,pfam_DUF1086,pfam_SNF2_N,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,superfamily_Homeodomain-like,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD4	HGNC	ENSG00000111642				188	0	0	158	12	7.05882
MDM2	0	genome.wustl.edu	37	12	69202995	69202995	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	69202995	69202995	T	C	SNP	MDM2	ENST00000462284	human	ensembl	74_37	+1	known	missense	c.22	p.C8R	1.000	pirsf_p53_neg-reg_MDM_2/4	pfam_SWIB_MDM2_domain,pfam_Znf_RanBP2,superfamily_SWIB_MDM2_domain,pirsf_p53_neg-reg_MDM_2/4,pfscan_Znf_RanBP2,pfscan_Znf_RING	-	no_errors	MDM2	HGNC	ENSG00000135679				489	0	0	351	31	8.11518
CD4	0	genome.wustl.edu	37	12	6928489	6928489	+	Silent	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	6928489	6928489	C	A	SNP	CD4	ENST00000011653	human	ensembl	74_37	+1	known	silent	c.1371	p.P457	0.001	NULL	pfam_CD4-extracel,pfam_Ig_C2-set,pfam_Tcell_CD4_Cterm,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Ig_I-set,pfam_NK_rcpt_2B4_Ig_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom,prints_Ag_CD4	-	no_errors	CD4	HGNC	ENSG00000010610				140	0	0	142	11	7.18954
CPSF6	0	genome.wustl.edu	37	12	69652831	69652831	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	69652831	69652831	C	T	SNP	CPSF6	ENST00000266679	human	ensembl	74_37	+1	known	nonsense	c.1267	p.R423*	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CPSF6	HGNC	ENSG00000111605				77	0	0	59	24	28.9157
USP5	0	genome.wustl.edu	37	12	6972414	6972414	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	6972414	6972414	C	T	SNP	USP5	ENST00000229268	human	ensembl	74_37	+1	known	silent	c.1827	p.P609	0.003	pfam_Peptidase_C19/C67,pirsf_Ubiquitinyl_hydrolase,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfam_UBA/Ts_N,pfam_Znf_UBP,superfamily_UBA-like,smart_Znf_UBP,smart_UBA/transl_elong_EF1B_N_euk,pirsf_Ubiquitinyl_hydrolase,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_UBP,pfscan_Peptidase_C19/C67	-	no_errors	USP5	HGNC	ENSG00000111667				56	0	0	61	5	7.57576
LYZ	0	genome.wustl.edu	37	12	69742245	69742245	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	69742245	69742245	G	T	SNP	LYZ	ENST00000261267	human	ensembl	74_37	+1	known	missense	c.57	p.K19N	0.964	pfam_Glyco_hydro_22,superfamily_Lysozyme-like_dom,smart_Glyco_hydro_22	pfam_Glyco_hydro_22,pfam_TGlycosylase-like_SLT,superfamily_Lysozyme-like_dom,smart_Glyco_hydro_22,prints_Glyco_hydro_22_lys,prints_Glyco_hydro_22	-	no_errors	LYZ	HGNC	ENSG00000090382				90	0	0	68	8	10.5263
SPSB2	0	genome.wustl.edu	37	12	6981914	6981914	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	6981914	6981914	T	C	SNP	SPSB2	ENST00000523102	human	ensembl	74_37	-1	known	missense	c.152	p.K51R	1.000	superfamily_ConA-like_lec_gl_sf,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_SOCS_C,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,smart_SOCS_C,pfscan_B30.2/SPRY,pfscan_SOCS_C	-	no_errors	SPSB2	HGNC	ENSG00000111671				101	0	0	129	8	5.83942
FRS2	0	genome.wustl.edu	37	12	69968696	69968696	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	69968696	69968696	T	C	SNP	FRS2	ENST00000299293	human	ensembl	74_37	+1	known	silent	c.1488	p.S496	0.997	NULL	pfam_Insln_rcpt_S1,smart_Insln_rcpt_S1,pfscan_Insln_rcpt_S1	-	no_errors	FRS2	HGNC	ENSG00000166225				115	0	0	81	8	8.98876
RAB3IP	0	genome.wustl.edu	37	12	70149411	70149411	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	70149411	70149411	T	C	SNP	RAB3IP	ENST00000550536	human	ensembl	74_37	+1	known	silent	c.271	p.L91	0.796	NULL	pfam_Sec2p	-	no_errors	RAB3IP	HGNC	ENSG00000127328				90	0	0	73	4	5.19481
LRRC23	0	genome.wustl.edu	37	12	7015022	7015022	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	7015022	7015022	C	T	SNP	LRRC23	ENST00000007969	human	ensembl	74_37	+1	known	missense	c.140	p.P47L	0.995	NULL	pfam_Leu-rich_rpt	-	no_errors	LRRC23	HGNC	ENSG00000010626				78	0	0	79	7	8.13953
ATN1	0	genome.wustl.edu	37	12	7043403	7043403	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	7043403	7043403	G	A	SNP	ATN1	ENST00000356654	human	ensembl	74_37	+1	known	missense	c.92	p.G31D	1.000	pfam_Atrophin-like	pfam_Atrophin-like,prints_Atrophin-1	-	no_errors	ATN1	HGNC	ENSG00000111676				80	0	0	65	4	5.7971
ATN1	0	genome.wustl.edu	37	12	7046281	7046281	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	7046281	7046281	C	T	SNP	ATN1	ENST00000356654	human	ensembl	74_37	+1	known	silent	c.1851	p.V617	0.954	pfam_Atrophin-like	pfam_Atrophin-like,prints_Atrophin-1	-	no_errors	ATN1	HGNC	ENSG00000111676				74	0	0	86	5	5.49451
ATN1	0	genome.wustl.edu	37	12	7047957	7047957	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	7047957	7047957	A	G	SNP	ATN1	ENST00000356654	human	ensembl	74_37	+1	known	missense	c.2831	p.D944G	1.000	pfam_Atrophin-like	pfam_Atrophin-like,prints_Atrophin-1	-	no_errors	ATN1	HGNC	ENSG00000111676				64	0	0	71	9	11.25
PHB2	0	genome.wustl.edu	37	12	7079581	7079581	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	7079581	7079581	G	A	SNP	PHB2	ENST00000399433	human	ensembl	74_37	-1	known	silent	c.126	p.T42	0.854	pfam_Band_7,smart_Band_7	pfam_Band_7,smart_Band_7,prints_Prohibitin	-	no_errors	PHB2	HGNC	ENSG00000215021				29	0	0	22	8	26.6667
LPCAT3	0	genome.wustl.edu	37	12	7087608	7087608	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	7087608	7087608	T	G	SNP	LPCAT3	ENST00000261407	human	ensembl	74_37	-1	known	missense	c.935	p.K312T	0.107	pfam_MBOAT_fam	pfam_MBOAT_fam	-	no_errors	LPCAT3	HGNC	ENSG00000111684				119	0	0	130	9	6.47482
PTPRR	0	genome.wustl.edu	37	12	71050594	71050594	+	Silent	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	71050594	71050594	T	A	SNP	PTPRR	ENST00000283228	human	ensembl	74_37	-1	known	silent	c.1770	p.A590	0.886	pirsf_Tyr_Pase_rcpt_R/non-rcpt_5,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	pirsf_Tyr_Pase_rcpt_R/non-rcpt_5,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_KIM-con,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRR	HGNC	ENSG00000153233				136	0	0	94	9	8.73786
ZFC3H1	0	genome.wustl.edu	37	12	72024378	72024378	+	Splice_Site	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	72024378	72024378	A	C	SNP	ZFC3H1	ENST00000378743	human	ensembl	74_37	-1	known	splice_site	c.3724+2	e18+2	1.000	-	-	-	no_errors	ZFC3H1	HGNC	ENSG00000133858				64	0	0	47	5	9.61538
TBC1D15	0	genome.wustl.edu	37	12	72265950	72265950	+	Splice_Site	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	72265950	72265950	T	C	SNP	TBC1D15	ENST00000550746	human	ensembl	74_37	+1	known	splice_site	c.129+2	e2+2	1.000	-	-	-	no_errors	TBC1D15	HGNC	ENSG00000121749				129	0	0	64	6	8.57143
TRHDE	0	genome.wustl.edu	37	12	72667178	72667178	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	72667178	72667178	G	T	SNP	TRHDE	ENST00000261180	human	ensembl	74_37	+1	known	missense	c.620	p.G207V	0.995	pfam_Peptidase_M1_N	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	TRHDE	HGNC	ENSG00000072657				65	0	0	75	8	9.63855
CLSTN3	0	genome.wustl.edu	37	12	7289485	7289485	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	7289485	7289485	C	T	SNP	CLSTN3	ENST00000266546	human	ensembl	74_37	+1	known	missense	c.989	p.A330V	0.050	superfamily_ConA-like_lec_gl_sf	pfam_Cadherin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CLSTN3	HGNC	ENSG00000139182				214	1	0.465116	162	49	23.2227
CLSTN3	0	genome.wustl.edu	37	12	7290632	7290632	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	7290632	7290632	G	A	SNP	CLSTN3	ENST00000266546	human	ensembl	74_37	+1	known	missense	c.1292	p.R431H	1.000	superfamily_ConA-like_lec_gl_sf	pfam_Cadherin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CLSTN3	HGNC	ENSG00000139182				70	0	0	60	5	7.69231
CLSTN3	0	genome.wustl.edu	37	12	7295559	7295559	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	7295559	7295559	C	T	SNP	CLSTN3	ENST00000266546	human	ensembl	74_37	+1	known	silent	c.1635	p.C545	1.000	superfamily_ConA-like_lec_gl_sf	pfam_Cadherin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CLSTN3	HGNC	ENSG00000139182				39	0	0	49	6	10.9091
PEX5	0	genome.wustl.edu	37	12	7361760	7361760	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	7361760	7361760	T	C	SNP	PEX5	ENST00000434354	human	ensembl	74_37	+1	known	silent	c.1599	p.R533	0.991	pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	PEX5	HGNC	ENSG00000139197				81	0	0	70	6	7.89474
KCNC2	0	genome.wustl.edu	37	12	75444651	75444651	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	75444651	75444651	A	G	SNP	KCNC2	ENST00000549446	human	ensembl	74_37	-1	known	silent	c.1134	p.S378	1.000	pfam_Ion_trans_dom,prints_K_chnl	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNC2	HGNC	ENSG00000166006				81	0	0	50	4	7.40741
CD163L1	0	genome.wustl.edu	37	12	7585081	7585081	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	7585081	7585081	T	A	SNP	CD163L1	ENST00000313599	human	ensembl	74_37	-1	known	missense	c.697	p.N233Y	0.000	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR,prints_SRCR	-	no_errors	CD163L1	HGNC	ENSG00000177675				89	0	0	67	4	5.6338
CD163	0	genome.wustl.edu	37	12	7653746	7653746	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	7653746	7653746	A	G	SNP	CD163	ENST00000359156	human	ensembl	74_37	-1	known	missense	c.446	p.V149A	1.000	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,prints_SRCR,pfscan_SRCR	-	no_errors	CD163	HGNC	ENSG00000177575				367	0	0	240	23	8.74525
OSBPL8	0	genome.wustl.edu	37	12	76772266	76772266	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	76772266	76772266	A	T	SNP	OSBPL8	ENST00000261183	human	ensembl	74_37	-1	known	missense	c.1695	p.D565E	0.995	pfam_Oxysterol-bd	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL8	HGNC	ENSG00000091039				262	0	0	176	10	5.37634
CSRP2	0	genome.wustl.edu	37	12	77259935	77259935	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	77259935	77259935	G	C	SNP	CSRP2	ENST00000311083	human	ensembl	74_37	-1	known	missense	c.106	p.L36V	1.000	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	CSRP2	HGNC	ENSG00000175183				44	0	0	45	4	8.16327
E2F7	0	genome.wustl.edu	37	12	77449736	77449736	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	77449736	77449736	G	T	SNP	E2F7	ENST00000322886	human	ensembl	74_37	-1	known	missense	c.268	p.L90I	1.000	NULL	pfam_E2F_TDP	-	no_errors	E2F7	HGNC	ENSG00000165891				165	0	0	162	16	8.98876
E2F7	0	genome.wustl.edu	37	12	77449893	77449893	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	77449893	77449893	A	T	SNP	E2F7	ENST00000322886	human	ensembl	74_37	-1	known	missense	c.111	p.D37E	0.987	NULL	pfam_E2F_TDP	-	no_errors	E2F7	HGNC	ENSG00000165891				105	0	0	62	6	8.82353
APOBEC1	0	genome.wustl.edu	37	12	7805322	7805322	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	7805322	7805322	G	A	SNP	APOBEC1	ENST00000229304	human	ensembl	74_37	-1	known	nonsense	c.154	p.R52*	0.727	pfam_APOBEC_N,superfamily_Cytidine_deaminase-like	pfam_APOBEC_N,pfam_APOBEC_C,superfamily_Cytidine_deaminase-like	-	no_errors	APOBEC1	HGNC	ENSG00000111701				75	0	0	52	6	10.3448
NAV3	0	genome.wustl.edu	37	12	78400965	78400965	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	78400965	78400965	A	G	SNP	NAV3	ENST00000397909	human	ensembl	74_37	+1	known	silent	c.1647	p.K549	0.993	NULL	pfam_CH-domain,pfam_ATPase_AAA_core,superfamily_CH-domain,superfamily_P-loop_NTPase,smart_CH-domain,smart_AAA+_ATPase,pfscan_CH-domain	-	no_errors	NAV3	HGNC	ENSG00000067798				77	0	0	62	7	10.1449
NAV3	0	genome.wustl.edu	37	12	78516145	78516145	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	78516145	78516145	G	A	SNP	NAV3	ENST00000397909	human	ensembl	74_37	+1	known	missense	c.4175	p.G1392D	1.000	NULL	pfam_CH-domain,pfam_ATPase_AAA_core,superfamily_CH-domain,superfamily_P-loop_NTPase,smart_CH-domain,smart_AAA+_ATPase,pfscan_CH-domain	-	no_errors	NAV3	HGNC	ENSG00000067798				92	0	0	86	9	9.47368
NAV3	0	genome.wustl.edu	37	12	78570943	78570943	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	78570943	78570943	C	T	SNP	NAV3	ENST00000397909	human	ensembl	74_37	+1	known	missense	c.5147	p.A1716V	1.000	NULL	pfam_CH-domain,pfam_ATPase_AAA_core,superfamily_CH-domain,superfamily_P-loop_NTPase,smart_CH-domain,smart_AAA+_ATPase,pfscan_CH-domain	-	no_errors	NAV3	HGNC	ENSG00000067798				139	0	0	92	8	8
MIR1252	0	genome.wustl.edu	37	12	79813047	79813047	+	RNA	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	79813047	79813047	A	G	SNP	MIR1252	ENST00000408861	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	MIR1252	HGNC	ENSG00000221788				35	0	0	28	5	15.1515
OTOGL	0	genome.wustl.edu	37	12	80750253	80750253	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	80750253	80750253	T	C	SNP	OTOGL	ENST00000458043	human	ensembl	74_37	+1	known	missense	c.5837	p.L1946S	0.722	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_AbfB,superfamily_AbfB,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_Cys_knot_C,pfscan_Cys_knot_C	-	no_errors	OTOGL	HGNC	ENSG00000165899				144	0	0	103	20	16.2602
FOXJ2	0	genome.wustl.edu	37	12	8203211	8203211	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	8203211	8203211	G	A	SNP	FOXJ2	ENST00000162391	human	ensembl	74_37	+1	known	missense	c.1631	p.R544H	1.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXJ2	HGNC	ENSG00000065970				90	0	0	72	7	8.86076
C3AR1	0	genome.wustl.edu	37	12	8212130	8212130	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	8212130	8212130	T	C	SNP	C3AR1	ENST00000307637	human	ensembl	74_37	-1	known	missense	c.652	p.T218A	0.000	pfscan_GPCR_Rhodpsn_7TM,prints_Anaphtx_C3AR1	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Anaphtx_C3AR1,prints_GPCR_Rhodpsn,prints_Anphylx_rcpt,prints_Formyl_pep_rcpt,prints_Anaphtx_C5AR1/C5AR2	-	no_errors	C3AR1	HGNC	ENSG00000171860				133	0	0	97	11	10.1852
TMTC2	0	genome.wustl.edu	37	12	83251004	83251004	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	83251004	83251004	G	A	SNP	TMTC2	ENST00000321196	human	ensembl	74_37	+1	known	missense	c.299	p.G100D	0.995	NULL	pfam_TPR_1,pfam_TPR_2,pfam_DUF1736,pfam_TPR-4,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TMTC2	HGNC	ENSG00000179104				145	0	0	126	7	5.26316
TMTC2	0	genome.wustl.edu	37	12	83526060	83526060	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	83526060	83526060	C	T	SNP	TMTC2	ENST00000321196	human	ensembl	74_37	+1	known	silent	c.2403	p.N801	1.000	pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR_1,pfam_TPR_2,pfam_DUF1736,pfam_TPR-4,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TMTC2	HGNC	ENSG00000179104				52	0	0	46	4	8
LOC101927905	0	genome.wustl.edu	37	12	8391334	8391334	+	RNA	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	8391334	8391334	A	T	SNP	LOC101927905	ENST00000304751	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.977	-	-	-	no_errors	RP11-266K4.9	Clone_based_vega_gene	ENSG00000215241				44	0	0	43	4	8.51064
LRRIQ1	0	genome.wustl.edu	37	12	85449486	85449486	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	85449486	85449486	A	G	SNP	LRRIQ1	ENST00000393217	human	ensembl	74_37	+1	known	silent	c.915	p.P305	0.140	pfscan_IQ_motif_EF-hand-BS	pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_IQ_motif_EF-hand-BS,smart_Leu-rich_rpt_typical-subtyp,pfscan_IQ_motif_EF-hand-BS	-	no_errors	LRRIQ1	HGNC	ENSG00000133640				86	0	0	51	5	8.92857
WNK1	0	genome.wustl.edu	37	12	863056	863056	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	863056	863056	G	A	SNP	WNK1	ENST00000530271	human	ensembl	74_37	+1	known	missense	c.325	p.A109T	0.186	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	WNK1	HGNC	ENSG00000060237				15	0	0	18	3	14.2857
CEP290	0	genome.wustl.edu	37	12	88454773	88454773	+	Splice_Site	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	88454773	88454773	T	C	SNP	CEP290	ENST00000309041	human	ensembl	74_37	-1	known	splice_site	c.6364-2	e46-2	0.997	-	-	-	no_errors	CEP290	HGNC	ENSG00000198707				20	0	0	8	2	20
CEP290	0	genome.wustl.edu	37	12	88483134	88483134	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	88483134	88483134	T	A	SNP	CEP290	ENST00000309041	human	ensembl	74_37	-1	known	missense	c.3710	p.N1237I	0.944	NULL	NULL	-	no_errors	CEP290	HGNC	ENSG00000198707				80	0	0	56	4	6.66667
CEP290	0	genome.wustl.edu	37	12	88483141	88483141	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	88483141	88483141	C	T	SNP	CEP290	ENST00000309041	human	ensembl	74_37	-1	known	missense	c.3703	p.A1235T	0.996	NULL	NULL	-	no_errors	CEP290	HGNC	ENSG00000198707				73	0	0	53	4	7.01754
TMTC3	0	genome.wustl.edu	37	12	88584371	88584371	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	88584371	88584371	C	T	SNP	TMTC3	ENST00000266712	human	ensembl	74_37	+1	known	missense	c.1678	p.P560S	1.000	smart_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR_2,pfam_TPR_1,pfam_DUF1736,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TMTC3	HGNC	ENSG00000139324				95	0	0	60	4	6.25
RIMKLB	0	genome.wustl.edu	37	12	8866566	8866566	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	8866566	8866566	G	T	SNP	RIMKLB	ENST00000357529	human	ensembl	74_37	+1	known	missense	c.104	p.C35F	1.000	tigrfam_RpS6_RimK/Lys_biosynth_LsyX	pfam_ATP-grasp_RimK-type,pfam_GSHS_ATP-bd,pfam_ATP-grasp_DUF201-type,pfscan_ATP-grasp,tigrfam_RpS6_RimK/Lys_biosynth_LsyX	-	no_errors	RIMKLB	HGNC	ENSG00000166532				91	0	0	63	4	5.97015
A2ML1	0	genome.wustl.edu	37	12	8990998	8990998	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	8990998	8990998	T	C	SNP	A2ML1	ENST00000299698	human	ensembl	74_37	+1	known	missense	c.922	p.Y308H	0.003	NULL	pfam_A2M_comp,pfam_Macroglobln_a2,pfam_A2M_N_2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_SV_autoAg,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd	-	no_errors	A2ML1	HGNC	ENSG00000166535				132	0	0	113	13	10.3175
GALNT4	0	genome.wustl.edu	37	12	89917932	89917932	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	89917932	89917932	C	A	SNP	GALNT4	ENST00000529983	human	ensembl	74_37	-1	known	missense	c.395	p.R132M	0.174	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT4	HGNC	ENSG00000257594				76	0	0	74	11	12.9412
ATP2B1	0	genome.wustl.edu	37	12	89997947	89997947	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	89997947	89997947	G	A	SNP	ATP2B1	ENST00000261173	human	ensembl	74_37	-1	known	silent	c.2619	p.G873	0.934	tigrfam_ATPase_P-typ_Ca-transp_plasma,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_plasma,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP2B1	HGNC	ENSG00000070961				73	0	0	48	11	18.6441
A2ML1	0	genome.wustl.edu	37	12	9004515	9004515	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	9004515	9004515	C	T	SNP	A2ML1	ENST00000299698	human	ensembl	74_37	+1	known	silent	c.2370	p.F790	1.000	pfam_Macroglobln_a2,pfam_SV_autoAg	pfam_A2M_comp,pfam_Macroglobln_a2,pfam_A2M_N_2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_SV_autoAg,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd	-	no_errors	A2ML1	HGNC	ENSG00000166535				176	0	0	151	8	5.03145
ATP2B1	0	genome.wustl.edu	37	12	90049575	90049575	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	90049575	90049575	G	A	SNP	ATP2B1	ENST00000261173	human	ensembl	74_37	-1	known	missense	c.89	p.T30M	1.000	NULL	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_plasma,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP2B1	HGNC	ENSG00000070961				113	0	0	71	9	11.25
PHC1	0	genome.wustl.edu	37	12	9089499	9089499	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	9089499	9089499	T	A	SNP	PHC1	ENST00000543824	human	ensembl	74_37	+1	known	missense	c.2416	p.Y806N	1.000	pfam_Znf_MYM,pfscan_Znf_FCS	pfam_SAM_type1,pfam_SAM_2,pfam_Znf_MYM,superfamily_SAM/pointed,smart_SAM,pfscan_SAM,pfscan_Znf_FCS	-	no_errors	PHC1	HGNC	ENSG00000111752				31	0	0	27	5	15.625
DCN	0	genome.wustl.edu	37	12	91539849	91539849	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	91539849	91539849	C	T	SNP	DCN	ENST00000052754	human	ensembl	74_37	-1	known	missense	c.1066	p.G356R	1.000	pirsf_SLRP_I_decor/aspor/byglycan	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,pirsf_SLRP_I_decor/aspor/byglycan	-	no_errors	DCN	HGNC	ENSG00000011465				112	0	0	76	20	20.8333
A2M	0	genome.wustl.edu	37	12	9221379	9221379	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	9221379	9221379	A	T	SNP	A2M	ENST00000318602	human	ensembl	74_37	-1	known	missense	c.4323	p.D1441E	0.995	pfam_A-macroglobulin_rcpt-bd,superfamily_A-macroglobulin_rcpt-bd	pfam_A2M_comp,pfam_A2M_N_2,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd,superfamily_Beta-lactam/transpept-like,superfamily_Cupredoxin	-	no_errors	A2M	HGNC	ENSG00000175899				29	0	0	30	5	14.2857
A2M	0	genome.wustl.edu	37	12	9262545	9262545	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	9262545	9262545	C	A	SNP	A2M	ENST00000318602	human	ensembl	74_37	-1	known	missense	c.591	p.E197D	1.000	pfam_A2M_N	pfam_A2M_comp,pfam_A2M_N_2,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd,superfamily_Beta-lactam/transpept-like,superfamily_Cupredoxin	-	no_errors	A2M	HGNC	ENSG00000175899				202	0	0	161	16	9.03955
PZP	0	genome.wustl.edu	37	12	9316284	9316284	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	9316284	9316284	T	C	SNP	PZP	ENST00000261336	human	ensembl	74_37	-1	known	missense	c.2716	p.I906V	0.986	NULL	pfam_A2M_comp,pfam_A2M_N_2,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_SV_autoAg,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd	-	no_errors	PZP	HGNC	ENSG00000126838				95	0	0	73	7	8.75
TMCC3	0	genome.wustl.edu	37	12	94975728	94975728	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	94975728	94975728	T	C	SNP	TMCC3	ENST00000261226	human	ensembl	74_37	-1	known	missense	c.665	p.H222R	1.000	pfam_Predicted_TM_coiled-coil_2	pfam_Predicted_TM_coiled-coil_2	-	no_errors	TMCC3	HGNC	ENSG00000057704				110	0	0	92	8	8
VEZT	0	genome.wustl.edu	37	12	95656842	95656842	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	95656842	95656842	C	T	SNP	VEZT	ENST00000436874	human	ensembl	74_37	+1	known	missense	c.419	p.A140V	1.000	NULL	NULL	-	no_errors	VEZT	HGNC	ENSG00000028203				297	1	0.33557	195	47	19.4215
VEZT	0	genome.wustl.edu	37	12	95668625	95668625	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	95668625	95668625	C	T	SNP	VEZT	ENST00000436874	human	ensembl	74_37	+1	known	missense	c.956	p.A319V	1.000	NULL	NULL	-	no_errors	VEZT	HGNC	ENSG00000028203				148	0	0	128	7	5.18519
CCDC38	0	genome.wustl.edu	37	12	96288811	96288811	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	96288811	96288811	G	A	SNP	CCDC38	ENST00000344280	human	ensembl	74_37	-1	known	missense	c.728	p.A243V	0.000	NULL	NULL	-	no_errors	CCDC38	HGNC	ENSG00000165972				221	0	0	135	11	7.53425
WNK1	0	genome.wustl.edu	37	12	968488	968488	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	968488	968488	A	G	SNP	WNK1	ENST00000530271	human	ensembl	74_37	+1	known	missense	c.1478	p.D493G	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	WNK1	HGNC	ENSG00000060237				120	0	0	84	5	5.61798
WNK1	0	genome.wustl.edu	37	12	977470	977470	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	977470	977470	C	T	SNP	WNK1	ENST00000530271	human	ensembl	74_37	+1	known	missense	c.2833	p.R945W	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	WNK1	HGNC	ENSG00000060237				16	0	0	16	6	27.2727
TMPO	0	genome.wustl.edu	37	12	98927983	98927983	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	98927983	98927983	C	T	SNP	TMPO	ENST00000266732	human	ensembl	74_37	+1	known	missense	c.1948	p.R650C	0.972	pfam_LAP2alpha	pfam_LAP2alpha,pfam_LEM-like_dom,pfam_LEM_dom,superfamily_LEM/LEM-like_dom,smart_LEM_dom,pfscan_LEM_dom,pfscan_LEM-like_dom	-	no_errors	TMPO	HGNC	ENSG00000120802				224	0	0	186	16	7.92079
TMPO	0	genome.wustl.edu	37	12	98928112	98928112	+	Nonsense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	98928112	98928112	A	T	SNP	TMPO	ENST00000266732	human	ensembl	74_37	+1	known	nonsense	c.2077	p.K693*	0.282	pfam_LAP2alpha	pfam_LAP2alpha,pfam_LEM-like_dom,pfam_LEM_dom,superfamily_LEM/LEM-like_dom,smart_LEM_dom,pfscan_LEM_dom,pfscan_LEM-like_dom	-	no_errors	TMPO	HGNC	ENSG00000120802				225	0	0	141	18	11.3208
WNK1	0	genome.wustl.edu	37	12	994674	994674	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	994674	994674	T	A	SNP	WNK1	ENST00000530271	human	ensembl	74_37	+1	known	missense	c.6198	p.H2066Q	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	WNK1	HGNC	ENSG00000060237				364	0	0	377	38	9.15663
ZIC5	0	genome.wustl.edu	37	13	100617835	100617835	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	100617835	100617835	G	A	SNP	ZIC5	ENST00000267294	human	ensembl	74_37	-1	known	silent	c.1788	p.G596	0.940	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZIC5	HGNC	ENSG00000139800				111	0	0	104	6	5.45455
PCCA	0	genome.wustl.edu	37	13	100959498	100959498	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	100959498	100959498	A	T	SNP	PCCA	ENST00000376285	human	ensembl	74_37	+1	known	missense	c.1337	p.D446V	1.000	pfam_Biotin_COase_C,superfamily_Rudment_hybrid_motif,smart_Biotin_COase_C,pfscan_Biotin_carboxylation_dom	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,pfam_Dala_Dala_lig_C,pfam_ATP-grasp_RimK-type,pfam_ATP-grasp_carboxylate-amine,superfamily_PreATP-grasp_dom,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_Biotin_lipoyl	-	no_errors	PCCA	HGNC	ENSG00000175198				64	0	0	41	6	12.766
TMTC4	0	genome.wustl.edu	37	13	101277794	101277794	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	101277794	101277794	G	A	SNP	TMTC4	ENST00000342624	human	ensembl	74_37	-1	known	missense	c.1831	p.R611C	1.000	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR_1,pfam_DUF1736,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TMTC4	HGNC	ENSG00000125247				73	0	0	70	16	18.6047
TMTC4	0	genome.wustl.edu	37	13	101287129	101287129	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	101287129	101287129	C	A	SNP	TMTC4	ENST00000342624	human	ensembl	74_37	-1	known	missense	c.1436	p.R479L	1.000	pfscan_TPR-contain_dom	pfam_TPR_1,pfam_DUF1736,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TMTC4	HGNC	ENSG00000125247				141	0	0	136	17	11.1111
NALCN	0	genome.wustl.edu	37	13	101707766	101707766	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	101707766	101707766	C	T	SNP	NALCN	ENST00000251127	human	ensembl	74_37	-1	known	missense	c.5098	p.V1700M	0.998	NULL	pfam_Ion_trans_dom	-	no_errors	NALCN	HGNC	ENSG00000102452				205	0	0	132	31	19.0184
NALCN	0	genome.wustl.edu	37	13	101733920	101733920	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	101733920	101733920	C	T	SNP	NALCN	ENST00000251127	human	ensembl	74_37	-1	known	silent	c.3843	p.T1281	0.886	pfam_Ion_trans_dom	pfam_Ion_trans_dom	-	no_errors	NALCN	HGNC	ENSG00000102452				77	0	0	46	9	16.3636
NALCN	0	genome.wustl.edu	37	13	101757279	101757279	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	101757279	101757279	C	A	SNP	NALCN	ENST00000251127	human	ensembl	74_37	-1	known	nonsense	c.2602	p.G868*	1.000	NULL	pfam_Ion_trans_dom	-	no_errors	NALCN	HGNC	ENSG00000102452				117	1	0.847458	84	9	9.67742
NALCN	0	genome.wustl.edu	37	13	101910797	101910797	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	101910797	101910797	C	T	SNP	NALCN	ENST00000251127	human	ensembl	74_37	-1	known	silent	c.1263	p.A421	0.981	pfam_Ion_trans_dom	pfam_Ion_trans_dom	-	no_errors	NALCN	HGNC	ENSG00000102452				34	0	0	33	4	10.8108
TEX30	0	genome.wustl.edu	37	13	103420632	103420632	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	103420632	103420632	T	C	SNP	TEX30	ENST00000376032	human	ensembl	74_37	-1	known	silent	c.276	p.K92	1.000	NULL	pfam_Dienelactn_hydro	-	no_errors	TEX30	HGNC	ENSG00000151287				153	0	0	102	7	6.42202
KDELC1	0	genome.wustl.edu	37	13	103449358	103449358	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	103449358	103449358	A	T	SNP	KDELC1	ENST00000376004	human	ensembl	74_37	-1	known	missense	c.184	p.F62I	0.998	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_LipoPS_modifying,pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,smart_LipoPS_modifying,pfscan_Filamin/ABP280_repeat-like	-	no_errors	KDELC1	HGNC	ENSG00000134901				104	0	0	70	4	5.40541
EFNB2	0	genome.wustl.edu	37	13	107145577	107145577	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	107145577	107145577	T	C	SNP	EFNB2	ENST00000245323	human	ensembl	74_37	-1	known	silent	c.813	p.T271	0.878	NULL	pfam_Ephrin,superfamily_Cupredoxin,prints_Ephrin	-	no_errors	EFNB2	HGNC	ENSG00000125266				73	0	0	69	4	5.47945
EFNB2	0	genome.wustl.edu	37	13	107148116	107148116	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	107148116	107148116	A	T	SNP	EFNB2	ENST00000245323	human	ensembl	74_37	-1	known	missense	c.479	p.I160N	1.000	pfam_Ephrin,superfamily_Cupredoxin	pfam_Ephrin,superfamily_Cupredoxin,prints_Ephrin	-	no_errors	EFNB2	HGNC	ENSG00000125266				276	0	0	171	39	18.5714
FAM155A	0	genome.wustl.edu	37	13	108518877	108518877	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	108518877	108518877	C	T	SNP	FAM155A	ENST00000375915	human	ensembl	74_37	-1	known	missense	c.68	p.R23Q	1.000	NULL	NULL	-	no_errors	FAM155A	HGNC	ENSG00000204442				248	1	0.401606	175	34	16.2679
LIG4	0	genome.wustl.edu	37	13	108861807	108861807	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	108861807	108861807	C	T	SNP	LIG4	ENST00000356922	human	ensembl	74_37	-1	known	missense	c.1810	p.G604R	0.958	superfamily_NA-bd_OB-fold	pfam_DNA_ligase_ATP-dep_cent,pfam_DNA_ligase_ATP-dep_N,pfam_DNA_ligase_IV,pfam_BRCT_dom,pfam_DNA_ligase_ATP-dep_C,superfamily_NA-bd_OB-fold,superfamily_BRCT_dom,superfamily_DNA_ligase_ATP-dep_N,smart_BRCT_dom,pfscan_BRCT_dom,pfscan_DNA_ligase_ATP-dep_cent,tigrfam_DNA_ligase_ATP-dep	-	no_errors	LIG4	HGNC	ENSG00000174405				122	0	0	77	9	10.4651
LIG4	0	genome.wustl.edu	37	13	108861847	108861847	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	108861847	108861847	C	T	SNP	LIG4	ENST00000356922	human	ensembl	74_37	-1	known	nonsense	c.1770	p.W590*	1.000	superfamily_NA-bd_OB-fold,tigrfam_DNA_ligase_ATP-dep	pfam_DNA_ligase_ATP-dep_cent,pfam_DNA_ligase_ATP-dep_N,pfam_DNA_ligase_IV,pfam_BRCT_dom,pfam_DNA_ligase_ATP-dep_C,superfamily_NA-bd_OB-fold,superfamily_BRCT_dom,superfamily_DNA_ligase_ATP-dep_N,smart_BRCT_dom,pfscan_BRCT_dom,pfscan_DNA_ligase_ATP-dep_cent,tigrfam_DNA_ligase_ATP-dep	-	no_errors	LIG4	HGNC	ENSG00000174405				97	0	0	64	7	9.85915
LIG4	0	genome.wustl.edu	37	13	108862965	108862965	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	108862965	108862965	T	C	SNP	LIG4	ENST00000356922	human	ensembl	74_37	-1	known	missense	c.652	p.T218A	1.000	superfamily_DNA_ligase_ATP-dep_N,tigrfam_DNA_ligase_ATP-dep	pfam_DNA_ligase_ATP-dep_cent,pfam_DNA_ligase_ATP-dep_N,pfam_DNA_ligase_IV,pfam_BRCT_dom,pfam_DNA_ligase_ATP-dep_C,superfamily_NA-bd_OB-fold,superfamily_BRCT_dom,superfamily_DNA_ligase_ATP-dep_N,smart_BRCT_dom,pfscan_BRCT_dom,pfscan_DNA_ligase_ATP-dep_cent,tigrfam_DNA_ligase_ATP-dep	-	no_errors	LIG4	HGNC	ENSG00000174405				85	0	0	57	3	5
MYO16	0	genome.wustl.edu	37	13	109438032	109438032	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	109438032	109438032	A	T	SNP	MYO16	ENST00000356711	human	ensembl	74_37	+1	known	missense	c.491	p.D164V	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Myosin_head_motor_dom,pfam_Ankyrin_rpt,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Myosin_head_motor_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO16	HGNC	ENSG00000041515				73	0	0	66	9	12
MYO16	0	genome.wustl.edu	37	13	109831918	109831918	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	109831918	109831918	G	A	SNP	MYO16	ENST00000356711	human	ensembl	74_37	+1	known	silent	c.5286	p.R1762	0.000	NULL	pfam_Myosin_head_motor_dom,pfam_Ankyrin_rpt,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Myosin_head_motor_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO16	HGNC	ENSG00000041515				127	0	0	66	4	5.71429
COL4A1	0	genome.wustl.edu	37	13	110822921	110822921	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	110822921	110822921	C	T	SNP	COL4A1	ENST00000375820	human	ensembl	74_37	-1	known	missense	c.3715	p.G1239R	1.000	NULL	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A1	HGNC	ENSG00000187498				16	0	0	8	3	27.2727
CARKD	0	genome.wustl.edu	37	13	111290911	111290911	+	RNA	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	111290911	111290911	C	T	SNP	CARKD	ENST00000470164	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CARKD	HGNC	ENSG00000213995				41	0	0	44	14	24.1379
ING1	0	genome.wustl.edu	37	13	111372083	111372083	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	111372083	111372083	G	A	SNP	ING1	ENST00000375774	human	ensembl	74_37	+1	known	missense	c.1073	p.C358Y	1.000	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	ING1	HGNC	ENSG00000153487				56	0	0	53	4	7.01754
ARHGEF7	0	genome.wustl.edu	37	13	111862257	111862257	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	111862257	111862257	T	C	SNP	ARHGEF7	ENST00000375741	human	ensembl	74_37	+1	known	missense	c.439	p.S147P	1.000	superfamily_CH-domain	pfam_DH-domain,pfam_SH3_2,pfam_SH3_domain,pfam_Pleckstrin_homology,pfam_CH-domain,superfamily_DH-domain,superfamily_CH-domain,superfamily_SH3_domain,smart_CH-domain,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_CH-domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain,prints_SH3_domain	-	no_errors	ARHGEF7	HGNC	ENSG00000102606				244	0	0	196	13	6.2201
ARHGEF7	0	genome.wustl.edu	37	13	111927973	111927973	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	111927973	111927973	T	C	SNP	ARHGEF7	ENST00000375741	human	ensembl	74_37	+1	known	missense	c.1430	p.L477P	1.000	pfscan_Pleckstrin_homology	pfam_DH-domain,pfam_SH3_2,pfam_SH3_domain,pfam_Pleckstrin_homology,pfam_CH-domain,superfamily_DH-domain,superfamily_CH-domain,superfamily_SH3_domain,smart_CH-domain,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_CH-domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain,prints_SH3_domain	-	no_errors	ARHGEF7	HGNC	ENSG00000102606				156	1	0.636943	113	11	8.87097
SPACA7	0	genome.wustl.edu	37	13	113053461	113053461	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	113053461	113053461	G	T	SNP	SPACA7	ENST00000283550	human	ensembl	74_37	+1	known	missense	c.323	p.G108V	0.000	NULL	NULL	-	no_errors	SPACA7	HGNC	ENSG00000153498				64	0	0	43	4	8.51064
ATP11A	0	genome.wustl.edu	37	13	113532535	113532535	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	113532535	113532535	A	G	SNP	ATP11A	ENST00000283558	human	ensembl	74_37	+1	known	missense	c.3332	p.K1111R	0.999	NULL	pfam_ATPase_P-typ_transduc_dom_A,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP11A	HGNC	ENSG00000068650				117	0	0	88	8	8.33333
MCF2L	0	genome.wustl.edu	37	13	113669143	113669143	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	113669143	113669143	G	A	SNP	MCF2L	ENST00000375604	human	ensembl	74_37	+1	known	missense	c.317	p.R106H	1.000	superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	pfam_DH-domain,pfam_Spectrin_repeat,pfam_Pleckstrin_homology,pfam_SH3_2,superfamily_DH-domain,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	MCF2L	HGNC	ENSG00000126217				65	0	0	92	8	8
F7	0	genome.wustl.edu	37	13	113773089	113773089	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	113773089	113773089	G	A	SNP	F7	ENST00000375581	human	ensembl	74_37	+1	known	missense	c.1168	p.A390T	1.000	pirsf_Pept_S1A_FX,pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pirsf_Pept_S1A_FX,pfam_Peptidase_S1,pfam_GLA_domain,pfam_Peptidase_S1A_nudel,pfam_EG-like_dom,superfamily_Trypsin-like_Pept_dom,superfamily_GLA_domain,smart_GLA_domain,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Peptidase_S1,prints_Peptidase_S1A,prints_GLA_domain,pfscan_EG-like_dom,pfscan_GLA_domain,pfscan_Peptidase_S1	-	no_errors	F7	HGNC	ENSG00000057593				26	0	0	14	6	30
LAMP1	0	genome.wustl.edu	37	13	113975975	113975975	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	113975975	113975975	G	A	SNP	LAMP1	ENST00000332556	human	ensembl	74_37	+1	known	silent	c.1047	p.A349	0.000	pfam_Lysosome-assoc_membr_glycop	pfam_Lysosome-assoc_membr_glycop,prints_Lysosome-assoc_membr_glycop	-	no_errors	LAMP1	HGNC	ENSG00000185896				66	0	0	82	6	6.81818
GRK1	0	genome.wustl.edu	37	13	114324068	114324068	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	114324068	114324068	G	A	SNP	GRK1	ENST00000335678	human	ensembl	74_37	+1	known	missense	c.766	p.A256T	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_RGS_dom,superfamily_Kinase-like_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Regulat_G_prot_signal_superfam,pfscan_Prot_kinase_dom,prints_GPCR_kinase	-	no_errors	GRK1	HGNC	ENSG00000185974				170	0	0	140	37	20.904
GAS6	0	genome.wustl.edu	37	13	114537624	114537624	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	114537624	114537624	C	T	SNP	GAS6	ENST00000357389	human	ensembl	74_37	-1	known	missense	c.734	p.G245D	0.000	pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom	pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,pfam_GLA_domain,superfamily_ConA-like_lec_gl_sf,superfamily_GLA_domain,smart_GLA_domain,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_GLA_domain,pfscan_Laminin_G,prints_GLA_domain	-	no_errors	GAS6	HGNC	ENSG00000183087				37	0	0	36	7	16.2791
RASA3	0	genome.wustl.edu	37	13	114780792	114780792	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	114780792	114780792	T	C	SNP	RASA3	ENST00000334062	human	ensembl	74_37	-1	known	missense	c.1298	p.Y433C	1.000	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,smart_RasGAP,pfscan_RasGAP	pfam_RasGAP,pfam_C2_dom,pfam_Znf_Btk_motif,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_C2_dom,smart_RasGAP,smart_Pleckstrin_homology,smart_Znf_Btk_motif,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_Znf_Btk_motif,pfscan_RasGAP,prints_Znf_Btk_motif	-	no_errors	RASA3	HGNC	ENSG00000185989				53	0	0	54	6	10
ZMYM5	0	genome.wustl.edu	37	13	20412952	20412952	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	20412952	20412952	C	T	SNP	ZMYM5	ENST00000337963	human	ensembl	74_37	-1	known	missense	c.760	p.G254R	1.000	pfam_Znf_MYM,smart_TRASH_dom	pfam_Znf_MYM,smart_TRASH_dom	-	no_errors	ZMYM5	HGNC	ENSG00000132950				233	0	0	172	20	10.4167
ZMYM2	0	genome.wustl.edu	37	13	20579332	20579332	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	20579332	20579332	G	T	SNP	ZMYM2	ENST00000382869	human	ensembl	74_37	+1	known	nonsense	c.1252	p.G418*	1.000	NULL	pfam_Znf_MYM,pfam_DUF3504,smart_TRASH_dom	-	no_errors	ZMYM2	HGNC	ENSG00000121741				57	0	0	48	5	9.43396
XPO4	0	genome.wustl.edu	37	13	21373315	21373315	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	21373315	21373315	A	G	SNP	XPO4	ENST00000255305	human	ensembl	74_37	-1	known	missense	c.2311	p.Y771H	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	XPO4	HGNC	ENSG00000132953				375	0	0	291	26	8.20189
XPO4	0	genome.wustl.edu	37	13	21373449	21373449	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	21373449	21373449	C	T	SNP	XPO4	ENST00000255305	human	ensembl	74_37	-1	known	nonsense	c.2177	p.W726*	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	XPO4	HGNC	ENSG00000132953				175	0	0	162	10	5.81395
LATS2	0	genome.wustl.edu	37	13	21562755	21562755	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	21562755	21562755	C	T	SNP	LATS2	ENST00000382592	human	ensembl	74_37	-1	known	silent	c.1164	p.A388	0.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_UBA-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom	-	no_errors	LATS2	HGNC	ENSG00000150457				17	0	0	13	5	27.7778
LATS2	0	genome.wustl.edu	37	13	21562993	21562993	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	21562993	21562993	G	A	SNP	LATS2	ENST00000382592	human	ensembl	74_37	-1	known	missense	c.926	p.A309V	0.013	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_UBA-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom	-	no_errors	LATS2	HGNC	ENSG00000150457				16	0	0	10	3	23.0769
SKA3	0	genome.wustl.edu	37	13	21736007	21736007	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	21736007	21736007	C	T	SNP	SKA3	ENST00000314759	human	ensembl	74_37	-1	known	missense	c.751	p.A251T	0.000	NULL	NULL	-	no_errors	SKA3	HGNC	ENSG00000165480				48	0	0	29	5	14.7059
MIPEPP3	0	genome.wustl.edu	37	13	21875703	21875703	+	RNA	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	21875703	21875703	G	A	SNP	MIPEPP3	ENST00000424756	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MIPEPP3	HGNC	ENSG00000233325				30	0	0	21	5	19.2308
FGF9	0	genome.wustl.edu	37	13	22275428	22275428	+	Silent	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	22275428	22275428	C	A	SNP	FGF9	ENST00000382353	human	ensembl	74_37	+1	known	silent	c.481	p.R161	1.000	pfam_Fibroblast_GF_fam,superfamily_Cytokine_IL1-like,smart_Fibroblast_GF_fam	pfam_Fibroblast_GF_fam,superfamily_Cytokine_IL1-like,smart_Fibroblast_GF_fam,prints_Fibroblast_GF_fam,prints_IL-1_fam/FGF_fam	-	no_errors	FGF9	HGNC	ENSG00000102678				75	0	0	72	4	5.26316
SACS	0	genome.wustl.edu	37	13	23904580	23904580	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	23904580	23904580	G	T	SNP	SACS	ENST00000382292	human	ensembl	74_37	-1	known	missense	c.13435	p.L4479I	1.000	pfam_HEPN,smart_HEPN,pfscan_HEPN	pfam_HEPN,pfam_Ubiquitin_dom,superfamily_HATPase_ATP-bd,superfamily_DnaJ_domain,smart_HEPN,pfscan_HEPN,pfscan_DnaJ_domain,pfscan_Ubiquitin_supergroup	-	no_errors	SACS	HGNC	ENSG00000151835				173	1	0.574713	148	13	8.07453
C1QTNF9	0	genome.wustl.edu	37	13	24890300	24890300	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	24890300	24890300	C	T	SNP	C1QTNF9	ENST00000332018	human	ensembl	74_37	+1	known	silent	c.159	p.G53	0.938	pfam_Collagen	pfam_C1q,pfam_Collagen,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	C1QTNF9	HGNC	ENSG00000240654				31	0	0	24	12	33.3333
PARP4	0	genome.wustl.edu	37	13	25072362	25072362	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	25072362	25072362	T	C	SNP	PARP4	ENST00000381989	human	ensembl	74_37	-1	known	silent	c.483	p.G161	0.000	NULL	pfam_Poly(ADP-ribose)pol_cat_dom,pfam_VIT,pfam_VWF_A,pfam_BRCT_dom,superfamily_Poly(ADP-ribose)pol_reg_dom,superfamily_BRCT_dom,smart_BRCT_dom,smart_VIT,smart_VWF_A,pfscan_BRCT_dom,pfscan_VWF_A,pfscan_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_reg_dom	-	no_errors	PARP4	HGNC	ENSG00000102699				31	0	0	36	4	10
ATP12A	0	genome.wustl.edu	37	13	25276190	25276190	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	25276190	25276190	G	A	SNP	ATP12A	ENST00000218548	human	ensembl	74_37	+1	known	missense	c.2017	p.V673M	1.000	pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Na/K_IIC	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP12A	HGNC	ENSG00000075673				128	0	0	84	18	17.6471
RNF17	0	genome.wustl.edu	37	13	25451230	25451230	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	25451230	25451230	A	G	SNP	RNF17	ENST00000255324	human	ensembl	74_37	+1	known	missense	c.4679	p.E1560G	0.995	NULL	pfam_Tudor,smart_Tudor,pfscan_Tudor,pfscan_Znf_RING	-	no_errors	RNF17	HGNC	ENSG00000132972				124	0	0	86	5	5.49451
CENPJ	0	genome.wustl.edu	37	13	25457393	25457393	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	25457393	25457393	A	T	SNP	CENPJ	ENST00000381884	human	ensembl	74_37	-1	known	missense	c.3939	p.H1313Q	0.692	pfam_Tcp10_C_dom	pfam_Tcp10_C_dom	-	no_errors	CENPJ	HGNC	ENSG00000151849				231	0	0	171	9	5
AMER2	0	genome.wustl.edu	37	13	25745239	25745239	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	25745239	25745239	C	T	SNP	AMER2	ENST00000515384	human	ensembl	74_37	-1	known	silent	c.519	p.S173	0.548	pfam_Uncharacterised_FAM123	pfam_Uncharacterised_FAM123	-	no_errors	AMER2	HGNC	ENSG00000165566				27	0	0	30	4	11.7647
MTMR6	0	genome.wustl.edu	37	13	25841985	25841985	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	25841985	25841985	T	C	SNP	MTMR6	ENST00000381801	human	ensembl	74_37	-1	known	missense	c.236	p.H79R	1.000	NULL	pfam_Myotubularin-like_Pase_dom,smart_Tyr_Pase_cat	-	no_errors	MTMR6	HGNC	ENSG00000139505				100	0	0	62	5	7.46269
ATP8A2	0	genome.wustl.edu	37	13	26163837	26163837	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	26163837	26163837	T	C	SNP	ATP8A2	ENST00000381655	human	ensembl	74_37	+1	known	silent	c.2211	p.D737	1.000	superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP8A2	HGNC	ENSG00000132932				144	0	0	101	7	6.48148
GPR12	0	genome.wustl.edu	37	13	27333537	27333537	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	27333537	27333537	T	A	SNP	GPR12	ENST00000381436	human	ensembl	74_37	-1	known	missense	c.428	p.Y143F	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPR_3/6/12_orphan	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPR_3/6/12_orphan,prints_GPR12,prints_GPCR_Rhodpsn	-	no_errors	GPR12	HGNC	ENSG00000132975				67	0	0	67	8	10.6667
CDX2	0	genome.wustl.edu	37	13	28537373	28537373	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	28537373	28537373	G	T	SNP	CDX2	ENST00000381020	human	ensembl	74_37	-1	known	missense	c.821	p.P274H	0.907	NULL	pfam_Caudal_activation_dom,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_HTH_motif,prints_Homeobox_metazoa	-	no_errors	CDX2	HGNC	ENSG00000165556				53	0	0	52	7	11.8644
PAN3	0	genome.wustl.edu	37	13	28866538	28866538	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	28866538	28866538	A	G	SNP	PAN3	ENST00000380958	human	ensembl	74_37	+1	known	missense	c.2543	p.E848G	1.000	NULL	superfamily_Kinase-like_dom,smart_Znf_CCCH,pfscan_Prot_kinase_dom	-	no_errors	PAN3	HGNC	ENSG00000152520				85	0	0	64	8	11.1111
FLT1	0	genome.wustl.edu	37	13	28959109	28959109	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	28959109	28959109	A	C	SNP	FLT1	ENST00000282397	human	ensembl	74_37	-1	known	missense	c.2029	p.S677A	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Prot_kinase_dom,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_VEGFR1_rcpt	-	no_errors	FLT1	HGNC	ENSG00000102755				138	0	0	143	14	8.9172
MTUS2	0	genome.wustl.edu	37	13	29855913	29855913	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	29855913	29855913	C	G	SNP	MTUS2	ENST00000431530	human	ensembl	74_37	+1	known	missense	c.2747	p.A916G	0.097	NULL	NULL	-	no_errors	MTUS2	HGNC	ENSG00000132938				41	0	0	41	5	10.8696
B3GALTL	0	genome.wustl.edu	37	13	31821211	31821211	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	31821211	31821211	T	C	SNP	B3GALTL	ENST00000343307	human	ensembl	74_37	+1	known	missense	c.322	p.W108R	0.985	NULL	pfam_Fringe-like	-	no_errors	B3GALTL	HGNC	ENSG00000187676				85	0	0	59	5	7.8125
RXFP2	0	genome.wustl.edu	37	13	32332460	32332460	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	32332460	32332460	A	G	SNP	RXFP2	ENST00000298386	human	ensembl	74_37	+1	known	missense	c.160	p.N54D	1.000	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt,prints_Relaxin_rcpt	pfam_GPCR_Rhodpsn,pfam_Leu-rich_rpt,pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_Leu-rich_rpt_typical-subtyp,pfscan_LDrepeatLR_classA_rpt,pfscan_GPCR_Rhodpsn_7TM,prints_Relaxin_rcpt,prints_GPCR_Rhodpsn,prints_Gphrmn_rcpt_fam	-	no_errors	RXFP2	HGNC	ENSG00000133105				145	0	0	123	10	7.5188
FRY	0	genome.wustl.edu	37	13	32808832	32808832	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	32808832	32808832	A	G	SNP	FRY	ENST00000380250	human	ensembl	74_37	+1	known	silent	c.5649	p.A1883	0.217	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	FRY	HGNC	ENSG00000073910				93	0	0	88	7	7.36842
FRY	0	genome.wustl.edu	37	13	32841346	32841346	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	32841346	32841346	G	A	SNP	FRY	ENST00000380250	human	ensembl	74_37	+1	known	silent	c.7986	p.S2662	0.740	NULL	superfamily_ARM-type_fold	-	no_errors	FRY	HGNC	ENSG00000073910				154	0	0	140	21	13.0435
FRY	0	genome.wustl.edu	37	13	32868689	32868689	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	32868689	32868689	G	T	SNP	FRY	ENST00000380250	human	ensembl	74_37	+1	known	missense	c.8765	p.R2922L	0.961	NULL	superfamily_ARM-type_fold	-	no_errors	FRY	HGNC	ENSG00000073910				55	0	0	41	4	8.88889
BRCA2	0	genome.wustl.edu	37	13	32906609	32906609	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	32906609	32906609	A	T	SNP	BRCA2	ENST00000380152	human	ensembl	74_37	+1	known	missense	c.994	p.I332F	0.012	pirsf_BRCA2	pfam_DNA_recomb/repair_BRCA2_hlx,pfam_BRCA2_repeat,pfam_BRCA2_OB_3,pfam_BRCA2_OB_1,pfam_Tower,superfamily_DNA_recomb/repair_BRCA2_hlx,superfamily_NA-bd_OB-fold,pirsf_BRCA2,pfscan_BRCA2_repeat	-	no_errors	BRCA2	HGNC	ENSG00000139618				197	0	0	143	11	7.14286
KL	0	genome.wustl.edu	37	13	33635256	33635256	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	33635256	33635256	C	T	SNP	KL	ENST00000380099	human	ensembl	74_37	+1	known	silent	c.2040	p.H680	0.001	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_1	-	no_errors	KL	HGNC	ENSG00000133116				64	0	0	46	6	11.5385
STARD13	0	genome.wustl.edu	37	13	33692261	33692261	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	33692261	33692261	T	A	SNP	STARD13	ENST00000336934	human	ensembl	74_37	-1	known	missense	c.2222	p.D741V	1.000	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_START_lipid-bd_dom,pfam_RhoGAP_dom,pfam_SAM_2,superfamily_Rho_GTPase_activation_prot,superfamily_SAM/pointed,smart_RhoGAP_dom,smart_START_lipid-bd_dom,pfscan_START_lipid-bd_dom,pfscan_RhoGAP_dom	-	no_errors	STARD13	HGNC	ENSG00000133121				107	0	0	84	10	10.6383
STARD13	0	genome.wustl.edu	37	13	33703177	33703177	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	33703177	33703177	G	A	SNP	STARD13	ENST00000336934	human	ensembl	74_37	-1	known	missense	c.1637	p.T546M	0.999	NULL	pfam_START_lipid-bd_dom,pfam_RhoGAP_dom,pfam_SAM_2,superfamily_Rho_GTPase_activation_prot,superfamily_SAM/pointed,smart_RhoGAP_dom,smart_START_lipid-bd_dom,pfscan_START_lipid-bd_dom,pfscan_RhoGAP_dom	-	no_errors	STARD13	HGNC	ENSG00000133121				108	0	0	76	9	10.5882
NBEA	0	genome.wustl.edu	37	13	36242655	36242655	+	Silent	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	36242655	36242655	A	C	SNP	NBEA	ENST00000310336	human	ensembl	74_37	+1	known	silent	c.8749	p.R2917	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_BEACH_dom,pfam_DUF1088,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_ConA-like_lec_gl_sf,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat_dom	-	no_errors	NBEA	HGNC	ENSG00000172915				55	0	0	46	4	8
DCLK1	0	genome.wustl.edu	37	13	36348794	36348794	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	36348794	36348794	G	A	SNP	DCLK1	ENST00000360631	human	ensembl	74_37	-1	known	missense	c.2101	p.R701C	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Doublecortin_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Doublecortin_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Doublecortin_dom,pfscan_Prot_kinase_dom	-	no_errors	DCLK1	HGNC	ENSG00000133083				28	0	0	14	3	17.6471
DCLK1	0	genome.wustl.edu	37	13	36699987	36699987	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	36699987	36699987	C	T	SNP	DCLK1	ENST00000360631	human	ensembl	74_37	-1	known	silent	c.288	p.S96	0.978	pfam_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	pfam_Prot_kinase_dom,pfam_Doublecortin_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Doublecortin_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Doublecortin_dom,pfscan_Prot_kinase_dom	-	no_errors	DCLK1	HGNC	ENSG00000133083				62	0	0	60	7	10.4478
SPG20	0	genome.wustl.edu	37	13	36909169	36909169	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	36909169	36909169	C	T	SNP	SPG20	ENST00000355182	human	ensembl	74_37	-1	known	missense	c.799	p.G267R	1.000	NULL	pfam_Senescence/spartin,pfam_MIT,smart_MIT	-	no_errors	SPG20	HGNC	ENSG00000133104				171	0	0	124	28	18.4211
SUPT20H	0	genome.wustl.edu	37	13	37614783	37614783	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	37614783	37614783	T	C	SNP	SUPT20H	ENST00000350612	human	ensembl	74_37	-1	known	missense	c.443	p.Y148C	1.000	pfam_Spt20	pfam_Spt20	-	no_errors	SUPT20H	HGNC	ENSG00000102710				93	0	0	61	6	8.95522
POSTN	0	genome.wustl.edu	37	13	38153250	38153250	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	38153250	38153250	A	G	SNP	POSTN	ENST00000379747	human	ensembl	74_37	-1	known	silent	c.1800	p.D600	0.986	pfam_FAS1_domain,superfamily_FAS1_domain,smart_FAS1_domain,pirsf_TGFb-ind_bIGH3/osteoblast_fac2,pfscan_FAS1_domain	pfam_FAS1_domain,superfamily_FAS1_domain,smart_FAS1_domain,pirsf_TGFb-ind_bIGH3/osteoblast_fac2,pfscan_EMI_domain,pfscan_FAS1_domain	-	no_errors	POSTN	HGNC	ENSG00000133110				43	0	0	41	4	8.88889
FREM2	0	genome.wustl.edu	37	13	39263259	39263259	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	39263259	39263259	A	T	SNP	FREM2	ENST00000280481	human	ensembl	74_37	+1	known	missense	c.1778	p.D593V	1.000	NULL	pfam_Calx_beta,superfamily_Cadherin-like,smart_Calx_beta	-	no_errors	FREM2	HGNC	ENSG00000150893				90	0	0	68	7	9.33333
FREM2	0	genome.wustl.edu	37	13	39432107	39432107	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	39432107	39432107	C	T	SNP	FREM2	ENST00000280481	human	ensembl	74_37	+1	known	silent	c.7152	p.D2384	0.993	NULL	pfam_Calx_beta,superfamily_Cadherin-like,smart_Calx_beta	-	no_errors	FREM2	HGNC	ENSG00000150893				110	0	0	58	25	30.1205
FREM2	0	genome.wustl.edu	37	13	39450201	39450201	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	39450201	39450201	G	A	SNP	FREM2	ENST00000280481	human	ensembl	74_37	+1	known	missense	c.8324	p.G2775D	0.996	NULL	pfam_Calx_beta,superfamily_Cadherin-like,smart_Calx_beta	-	no_errors	FREM2	HGNC	ENSG00000150893				181	0	0	132	11	7.69231
PROSER1	0	genome.wustl.edu	37	13	39587269	39587269	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	39587269	39587269	A	T	SNP	PROSER1	ENST00000352251	human	ensembl	74_37	-1	known	missense	c.2120	p.F707Y	0.995	NULL	NULL	-	no_errors	PROSER1	HGNC	ENSG00000120685				133	0	0	117	15	11.3636
PROSER1	0	genome.wustl.edu	37	13	39587655	39587655	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	39587655	39587655	T	C	SNP	PROSER1	ENST00000352251	human	ensembl	74_37	-1	known	silent	c.1734	p.S578	0.000	NULL	NULL	-	no_errors	PROSER1	HGNC	ENSG00000120685				113	0	0	106	10	8.62069
COG6	0	genome.wustl.edu	37	13	40261756	40261756	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	40261756	40261756	A	G	SNP	COG6	ENST00000455146	human	ensembl	74_37	+1	known	missense	c.905	p.H302R	1.000	pfam_COG6	pfam_COG6	-	no_errors	COG6	HGNC	ENSG00000133103				112	0	0	99	6	5.71429
KBTBD6	0	genome.wustl.edu	37	13	41706252	41706252	+	Silent	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	41706252	41706252	A	T	SNP	KBTBD6	ENST00000379485	human	ensembl	74_37	-1	known	silent	c.396	p.G132	0.990	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_BTB_POZ,pfam_BACK,pfam_Kelch_1,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pfscan_BTB/POZ-like	-	no_errors	KBTBD6	HGNC	ENSG00000165572				50	0	0	56	5	8.19672
NAA16	0	genome.wustl.edu	37	13	41902913	41902913	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	41902913	41902913	A	G	SNP	NAA16	ENST00000379406	human	ensembl	74_37	+1	known	missense	c.745	p.N249D	0.985	smart_TPR_repeat,pirsf_NatA_aux_su	pfam_TPR_2,pfam_NatA_aux_su,pfam_TPR_1,smart_TPR_repeat,pirsf_NatA_aux_su,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	NAA16	HGNC	ENSG00000172766				164	0	0	118	14	10.6061
VWA8	0	genome.wustl.edu	37	13	42303761	42303761	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	42303761	42303761	G	T	SNP	VWA8	ENST00000379310	human	ensembl	74_37	-1	known	missense	c.2555	p.A852D	1.000	pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_ATPase_dyneun-rel_AAA,pfam_VWF_A,superfamily_P-loop_NTPase,smart_AAA+_ATPase,smart_VWF_A,pfscan_VWF_A	-	no_errors	VWA8	HGNC	ENSG00000102763				152	0	0	69	19	21.5909
VWA8	0	genome.wustl.edu	37	13	42385394	42385394	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	42385394	42385394	A	G	SNP	VWA8	ENST00000379310	human	ensembl	74_37	-1	known	missense	c.2030	p.L677P	1.000	superfamily_P-loop_NTPase	pfam_ATPase_dyneun-rel_AAA,pfam_VWF_A,superfamily_P-loop_NTPase,smart_AAA+_ATPase,smart_VWF_A,pfscan_VWF_A	-	no_errors	VWA8	HGNC	ENSG00000102763				159	0	0	142	10	6.57895
VWA8	0	genome.wustl.edu	37	13	42407516	42407516	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	42407516	42407516	A	C	SNP	VWA8	ENST00000379310	human	ensembl	74_37	-1	known	missense	c.1577	p.V526G	1.000	pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_ATPase_dyneun-rel_AAA,pfam_VWF_A,superfamily_P-loop_NTPase,smart_AAA+_ATPase,smart_VWF_A,pfscan_VWF_A	-	no_errors	VWA8	HGNC	ENSG00000102763				39	0	0	41	3	6.81818
VWA8	0	genome.wustl.edu	37	13	42457538	42457538	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	42457538	42457538	C	T	SNP	VWA8	ENST00000379310	human	ensembl	74_37	-1	known	silent	c.1065	p.V355	1.000	NULL	pfam_ATPase_dyneun-rel_AAA,pfam_VWF_A,superfamily_P-loop_NTPase,smart_AAA+_ATPase,smart_VWF_A,pfscan_VWF_A	-	no_errors	VWA8	HGNC	ENSG00000102763				76	0	0	66	5	7.04225
DGKH	0	genome.wustl.edu	37	13	42729868	42729868	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	42729868	42729868	A	G	SNP	DGKH	ENST00000538674	human	ensembl	74_37	+1	known	missense	c.53	p.D18G	0.045	NULL	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory	-	no_errors	DGKH	HGNC	ENSG00000102780				111	0	0	87	5	5.43478
DGKH	0	genome.wustl.edu	37	13	42795459	42795459	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	42795459	42795459	T	C	SNP	DGKH	ENST00000337343	human	ensembl	74_37	+1	known	missense	c.3502	p.Y1168H	1.000	pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Pleckstrin_homology,pfam_SAM_2,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_SAM_type1,superfamily_SAM/pointed,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,smart_SAM,pfscan_Pleckstrin_homology,pfscan_SAM,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	DGKH	HGNC	ENSG00000102780				134	0	0	107	8	6.95652
AKAP11	0	genome.wustl.edu	37	13	42872729	42872729	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	42872729	42872729	A	T	SNP	AKAP11	ENST00000025301	human	ensembl	74_37	+1	known	missense	c.412	p.I138F	0.997	NULL	NULL	-	no_errors	AKAP11	HGNC	ENSG00000023516				162	0	0	113	11	8.87097
NUFIP1	0	genome.wustl.edu	37	13	45553376	45553376	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	45553376	45553376	A	G	SNP	NUFIP1	ENST00000379161	human	ensembl	74_37	-1	known	missense	c.683	p.I228T	1.000	pfam_NUFIP1_cons_dom	pfam_NUFIP1_cons_dom,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	NUFIP1	HGNC	ENSG00000083635				117	0	0	82	5	5.74713
KCTD4	0	genome.wustl.edu	37	13	45768438	45768438	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	45768438	45768438	C	T	SNP	KCTD4	ENST00000379108	human	ensembl	74_37	-1	known	missense	c.265	p.V89I	1.000	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	-	no_errors	KCTD4	HGNC	ENSG00000180332				146	0	0	91	24	20.8696
GTF2F2	0	genome.wustl.edu	37	13	45841416	45841416	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	45841416	45841416	G	A	SNP	GTF2F2	ENST00000340473	human	ensembl	74_37	+1	known	missense	c.535	p.D179N	1.000	pfam_TFIIF_beta,pirsf_TFIIF-beta_subgr	pfam_TFIIF_beta,superfamily_TFIIF_interaction,pirsf_TFIIF-beta_subgr	-	no_errors	GTF2F2	HGNC	ENSG00000188342				134	0	0	102	8	7.27273
COG3	0	genome.wustl.edu	37	13	46093104	46093104	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	46093104	46093104	G	A	SNP	COG3	ENST00000349995	human	ensembl	74_37	+1	known	missense	c.2029	p.E677K	1.000	NULL	pfam_COG_su3,superfamily_Cullin_repeat-like_dom	-	no_errors	COG3	HGNC	ENSG00000136152				90	0	0	74	6	7.5
SPERT	0	genome.wustl.edu	37	13	46287717	46287717	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	46287717	46287717	A	G	SNP	SPERT	ENST00000310521	human	ensembl	74_37	+1	known	missense	c.557	p.N186S	0.987	NULL	NULL	-	no_errors	SPERT	HGNC	ENSG00000174015				71	0	0	61	4	6.15385
SPERT	0	genome.wustl.edu	37	13	46287807	46287807	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	46287807	46287807	C	T	SNP	SPERT	ENST00000310521	human	ensembl	74_37	+1	known	missense	c.647	p.S216L	0.001	NULL	NULL	-	no_errors	SPERT	HGNC	ENSG00000174015				35	0	0	42	4	8.69565
SIAH3	0	genome.wustl.edu	37	13	46357728	46357728	+	Silent	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	46357728	46357728	G	T	SNP	SIAH3	ENST00000400405	human	ensembl	74_37	-1	known	silent	c.600	p.T200	1.000	pfam_7-in-absentia-prot_TRAF-dom,superfamily_TRAF-like	pfam_7-in-absentia-prot_TRAF-dom,superfamily_TRAF-like	-	no_errors	SIAH3	HGNC	ENSG00000215475				35	0	0	39	6	13.3333
ZC3H13	0	genome.wustl.edu	37	13	46559477	46559477	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	46559477	46559477	G	A	SNP	ZC3H13	ENST00000242848	human	ensembl	74_37	-1	known	nonsense	c.1675	p.R559*	0.994	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H13	HGNC	ENSG00000123200				124	0	0	99	13	11.6071
CPB2	0	genome.wustl.edu	37	13	46638817	46638817	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	46638817	46638817	G	A	SNP	CPB2	ENST00000181383	human	ensembl	74_37	-1	known	silent	c.762	p.D254	0.987	pfam_Peptidase_M14,smart_Peptidase_M14,prints_Peptidase_M14	pfam_Peptidase_M14,pfam_Prot_inh_M14A,superfamily_Prot_inh_propept,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPB2	HGNC	ENSG00000080618				77	0	0	70	6	7.89474
CPB2	0	genome.wustl.edu	37	13	46661956	46661956	+	Splice_Site	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	46661956	46661956	C	T	SNP	CPB2	ENST00000181383	human	ensembl	74_37	-1	known	splice_site	c.75-1	e2-1	1.000	-	-	-	no_errors	CPB2	HGNC	ENSG00000080618				156	0	0	113	12	9.6
HTR2A	0	genome.wustl.edu	37	13	47409003	47409003	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	47409003	47409003	T	G	SNP	HTR2A	ENST00000378688	human	ensembl	74_37	-1	known	missense	c.1385	p.D462A	0.000	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_5HT2A_rcpt,prints_GPCR_Rhodpsn,prints_5HT_rcpt	-	no_errors	HTR2A	HGNC	ENSG00000102468				119	0	0	97	13	11.8182
RB1	0	genome.wustl.edu	37	13	48921969	48921969	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	48921969	48921969	A	G	SNP	RB1	ENST00000267163	human	ensembl	74_37	+1	known	missense	c.509	p.E170G	1.000	pfam_RB_N	pfam_RB_C,pfam_RB_A,pfam_RB_B,pfam_RB_N,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	RB1	HGNC	ENSG00000139687				72	0	0	43	4	8.51064
FNDC3A	0	genome.wustl.edu	37	13	49781431	49781431	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	49781431	49781431	G	A	SNP	FNDC3A	ENST00000492622	human	ensembl	74_37	+1	known	missense	c.3497	p.R1166Q	0.998	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	FNDC3A	HGNC	ENSG00000102531				40	0	0	28	12	30
CDADC1	0	genome.wustl.edu	37	13	49833617	49833617	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	49833617	49833617	T	C	SNP	CDADC1	ENST00000251108	human	ensembl	74_37	+1	known	missense	c.388	p.S130P	1.000	pfam_CMP_dCMP_Zn-bd,superfamily_Cytidine_deaminase-like	pfam_CMP_dCMP_Zn-bd,superfamily_Cytidine_deaminase-like	-	no_errors	CDADC1	HGNC	ENSG00000102543				102	0	0	71	24	25.2632
CAB39L	0	genome.wustl.edu	37	13	49885125	49885125	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	49885125	49885125	A	G	SNP	CAB39L	ENST00000347776	human	ensembl	74_37	-1	known	missense	c.839	p.F280S	1.000	pfam_Mo25,superfamily_ARM-type_fold	pfam_Mo25,superfamily_ARM-type_fold	-	no_errors	CAB39L	HGNC	ENSG00000102547				201	0	0	169	11	6.11111
SETDB2	0	genome.wustl.edu	37	13	50050783	50050783	+	Nonsense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	50050783	50050783	T	A	SNP	SETDB2	ENST00000317257	human	ensembl	74_37	+1	known	nonsense	c.513	p.C171*	1.000	pfam_Methyl_CpG_DNA-bd,superfamily_DNA-bd_dom,smart_Methyl_CpG_DNA-bd,pfscan_Methyl_CpG_DNA-bd	pfam_SET_dom,pfam_Pre-SET_dom,pfam_Methyl_CpG_DNA-bd,superfamily_DNA-bd_dom,smart_Methyl_CpG_DNA-bd,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,pfscan_Methyl_CpG_DNA-bd,pfscan_SET_dom,pfscan_Pre-SET_dom	-	no_errors	SETDB2	HGNC	ENSG00000136169				143	0	0	88	20	18.5185
SETDB2	0	genome.wustl.edu	37	13	50055082	50055082	+	Splice_Site	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	50055082	50055082	G	A	SNP	SETDB2	ENST00000317257	human	ensembl	74_37	+1	known	splice_site	c.1023-1	e8-1	1.000	-	-	-	no_errors	SETDB2	HGNC	ENSG00000136169				115	0	0	64	6	8.57143
KPNA3	0	genome.wustl.edu	37	13	50279883	50279883	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	50279883	50279883	A	G	SNP	KPNA3	ENST00000261667	human	ensembl	74_37	-1	known	missense	c.1246	p.F416L	1.000	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo	pfam_Armadillo,pfam_Importin-a_IBB,pfam_HEAT,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo,pfscan_Importin-a_IBB	-	no_errors	KPNA3	HGNC	ENSG00000102753				94	0	0	67	5	6.94444
FAM124A	0	genome.wustl.edu	37	13	51855296	51855296	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	51855296	51855296	C	T	SNP	FAM124A	ENST00000280057	human	ensembl	74_37	+1	known	silent	c.1653	p.C551	0.000	NULL	NULL	-	no_errors	FAM124A	HGNC	ENSG00000150510				68	0	0	73	5	6.41026
ATP7B	0	genome.wustl.edu	37	13	52515217	52515217	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	52515217	52515217	C	T	SNP	ATP7B	ENST00000242839	human	ensembl	74_37	-1	known	missense	c.3556	p.G1186S	0.996	pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_Cation_transp_P-typ_ATPase_IB,tigrfam_Cation_transp_P_typ_ATPase	pfam_HeavyMe-assoc_HMA,pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_HeavyMe-assoc_HMA,pfscan_HeavyMe-assoc_HMA,prints_Cation_transp_P_typ_ATPase,tigrfam_Cation_transp_P-typ_ATPase_IB,tigrfam_Cation_transp_P_typ_ATPase,tigrfam_HMA_Cu_ion-bd	-	no_errors	ATP7B	HGNC	ENSG00000123191				90	0	0	59	9	13.2353
ATP7B	0	genome.wustl.edu	37	13	52523920	52523920	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	52523920	52523920	G	A	SNP	ATP7B	ENST00000242839	human	ensembl	74_37	-1	known	nonsense	c.2743	p.Q915*	1.000	pfam_ATPase_P-typ_transduc_dom_A,tigrfam_Cation_transp_P-typ_ATPase_IB,tigrfam_Cation_transp_P_typ_ATPase	pfam_HeavyMe-assoc_HMA,pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_HeavyMe-assoc_HMA,pfscan_HeavyMe-assoc_HMA,prints_Cation_transp_P_typ_ATPase,tigrfam_Cation_transp_P-typ_ATPase_IB,tigrfam_Cation_transp_P_typ_ATPase,tigrfam_HMA_Cu_ion-bd	-	no_errors	ATP7B	HGNC	ENSG00000123191				128	0	0	93	7	7
ATP7B	0	genome.wustl.edu	37	13	52539088	52539088	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	52539088	52539088	C	T	SNP	ATP7B	ENST00000242839	human	ensembl	74_37	-1	known	missense	c.1789	p.V597I	1.000	pfam_HeavyMe-assoc_HMA,superfamily_HeavyMe-assoc_HMA,pfscan_HeavyMe-assoc_HMA,tigrfam_HMA_Cu_ion-bd	pfam_HeavyMe-assoc_HMA,pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_HeavyMe-assoc_HMA,pfscan_HeavyMe-assoc_HMA,prints_Cation_transp_P_typ_ATPase,tigrfam_Cation_transp_P-typ_ATPase_IB,tigrfam_Cation_transp_P_typ_ATPase,tigrfam_HMA_Cu_ion-bd	-	no_errors	ATP7B	HGNC	ENSG00000123191				133	1	0.746269	98	17	14.7826
NEK5	0	genome.wustl.edu	37	13	52663438	52663438	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	52663438	52663438	T	C	SNP	NEK5	ENST00000355568	human	ensembl	74_37	-1	known	missense	c.1220	p.Y407C	0.996	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK5	HGNC	ENSG00000197168				57	0	0	41	4	8.88889
THSD1	0	genome.wustl.edu	37	13	52952229	52952229	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	52952229	52952229	G	A	SNP	THSD1	ENST00000258613	human	ensembl	74_37	-1	known	missense	c.1876	p.R626C	0.470	NULL	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD1	HGNC	ENSG00000136114				73	0	0	58	4	6.45161
THSD1	0	genome.wustl.edu	37	13	52952905	52952905	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	52952905	52952905	T	C	SNP	THSD1	ENST00000258613	human	ensembl	74_37	-1	known	silent	c.1200	p.P400	0.000	NULL	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD1	HGNC	ENSG00000136114				29	0	0	30	7	18.9189
PCDH8	0	genome.wustl.edu	37	13	53420245	53420245	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	53420245	53420245	C	T	SNP	PCDH8	ENST00000377942	human	ensembl	74_37	-1	known	missense	c.2327	p.R776H	1.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH8	HGNC	ENSG00000136099				76	0	0	65	16	19.7531
PCDH17	0	genome.wustl.edu	37	13	58208481	58208481	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	58208481	58208481	G	A	SNP	PCDH17	ENST00000377918	human	ensembl	74_37	+1	known	missense	c.1801	p.A601T	1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH17	HGNC	ENSG00000118946				36	0	0	36	4	10
PCDH17	0	genome.wustl.edu	37	13	58208869	58208869	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	58208869	58208869	G	A	SNP	PCDH17	ENST00000377918	human	ensembl	74_37	+1	known	missense	c.2189	p.C730Y	1.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH17	HGNC	ENSG00000118946				67	0	0	41	16	28.0702
DIAPH3	0	genome.wustl.edu	37	13	60240957	60240957	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	60240957	60240957	C	A	SNP	DIAPH3	ENST00000400324	human	ensembl	74_37	-1	known	nonsense	c.3343	p.E1115*	1.000	NULL	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,pfam_Drf_DAD,superfamily_ARM-type_fold,smart_FH2_Formin	-	no_errors	DIAPH3	HGNC	ENSG00000139734				97	0	0	61	9	12.8571
DIAPH3	0	genome.wustl.edu	37	13	60545158	60545158	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	60545158	60545158	G	T	SNP	DIAPH3	ENST00000400324	human	ensembl	74_37	-1	known	missense	c.1787	p.P596H	1.000	NULL	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,pfam_Drf_DAD,superfamily_ARM-type_fold,smart_FH2_Formin	-	no_errors	DIAPH3	HGNC	ENSG00000139734				75	0	0	63	6	8.69565
DIAPH3	0	genome.wustl.edu	37	13	60616864	60616864	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	60616864	60616864	G	T	SNP	DIAPH3	ENST00000400324	human	ensembl	74_37	-1	known	missense	c.586	p.L196M	1.000	pfam_GTPase-bd,superfamily_ARM-type_fold	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,pfam_Drf_DAD,superfamily_ARM-type_fold,smart_FH2_Formin	-	no_errors	DIAPH3	HGNC	ENSG00000139734				54	0	0	45	4	8.16327
PCDH20	0	genome.wustl.edu	37	13	61986186	61986186	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	61986186	61986186	A	G	SNP	PCDH20	ENST00000409186	human	ensembl	74_37	-1	known	silent	c.2046	p.S682	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH20	HGNC	ENSG00000197991				122	0	0	99	14	12.3894
DACH1	0	genome.wustl.edu	37	13	72049923	72049923	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	72049923	72049923	T	C	SNP	DACH1	ENST00000359684	human	ensembl	74_37	-1	known	silent	c.2091	p.A697	0.759	NULL	pfam_Transform_Ski,superfamily_DNA-bd_dom_put	-	no_errors	DACH1	HGNC	ENSG00000165659				216	0	0	157	23	12.7778
DACH1	0	genome.wustl.edu	37	13	72146996	72146996	+	Silent	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	72146996	72146996	G	T	SNP	DACH1	ENST00000359684	human	ensembl	74_37	-1	known	silent	c.1437	p.S479	1.000	NULL	pfam_Transform_Ski,superfamily_DNA-bd_dom_put	-	no_errors	DACH1	HGNC	ENSG00000165659				80	0	0	69	5	6.75676
DIS3	0	genome.wustl.edu	37	13	73350153	73350153	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	73350153	73350153	A	G	SNP	DIS3	ENST00000377767	human	ensembl	74_37	-1	known	silent	c.732	p.G244	0.251	NULL	smart_PIN_dom	-	no_errors	DIS3	HGNC	ENSG00000083520				84	0	0	55	5	8.33333
TBC1D4	0	genome.wustl.edu	37	13	75861153	75861153	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	75861153	75861153	A	G	SNP	TBC1D4	ENST00000377636	human	ensembl	74_37	-1	known	silent	c.3672	p.H1224	1.000	NULL	pfam_Rab-GTPase-TBC_dom,pfam_DUF3350,pfam_PTB/PI_dom,superfamily_Rab-GTPase-TBC_dom,smart_PTB/PI_dom,smart_Rab-GTPase-TBC_dom,pfscan_PTB/PI_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D4	HGNC	ENSG00000136111				86	0	0	74	4	5.12821
LMO7	0	genome.wustl.edu	37	13	76408473	76408473	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	76408473	76408473	C	T	SNP	LMO7	ENST00000357063	human	ensembl	74_37	+1	known	missense	c.3332	p.A1111V	0.999	superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_CH-domain,pfam_PDZ,superfamily_CH-domain,superfamily_PDZ,smart_CH-domain,smart_PDZ,pfscan_CH-domain,pfscan_PDZ,prints_SM22_calponin	-	no_errors	LMO7	HGNC	ENSG00000136153				156	0	0	95	8	7.76699
KCTD12	0	genome.wustl.edu	37	13	77459345	77459345	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	77459345	77459345	G	C	SNP	KCTD12	ENST00000317765	human	ensembl	74_37	-1	known	missense	c.939	p.I313M	1.000	NULL	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	-	no_errors	KCTD12	HGNC	ENSG00000178695				64	0	0	66	5	7.04225
MYCBP2	0	genome.wustl.edu	37	13	77671955	77671955	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	77671955	77671955	T	A	SNP	MYCBP2	ENST00000407578	human	ensembl	74_37	-1	known	missense	c.9334	p.M3112L	1.000	superfamily_ARM-type_fold	pfam_PHR,pfam_Reg_chr_condens,pfam_Filamin/ABP280_repeat-like,superfamily_RCC1/BLIP-II,superfamily_Galactose-bd-like,superfamily_Ig_E-set,superfamily_ARM-type_fold,smart_Znf_RING,pfscan_Filamin/ABP280_repeat-like,pfscan_Znf_RING,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	MYCBP2	HGNC	ENSG00000005810				130	0	0	115	14	10.8527
MYCBP2	0	genome.wustl.edu	37	13	77847693	77847693	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	77847693	77847693	C	T	SNP	MYCBP2	ENST00000407578	human	ensembl	74_37	-1	known	missense	c.859	p.A287T	1.000	superfamily_ARM-type_fold	pfam_PHR,pfam_Reg_chr_condens,pfam_Filamin/ABP280_repeat-like,superfamily_RCC1/BLIP-II,superfamily_Galactose-bd-like,superfamily_Ig_E-set,superfamily_ARM-type_fold,smart_Znf_RING,pfscan_Filamin/ABP280_repeat-like,pfscan_Znf_RING,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	MYCBP2	HGNC	ENSG00000005810				106	0	0	105	6	5.40541
EDNRB	0	genome.wustl.edu	37	13	78492418	78492418	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	78492418	78492418	C	A	SNP	EDNRB	ENST00000334286	human	ensembl	74_37	-1	known	missense	c.291	p.K97N	0.805	prints_Endthln_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_ETB_rcpt,prints_Endthln_rcpt,prints_GPCR_Rhodpsn,prints_Bombsn_rcpt	-	no_errors	EDNRB	HGNC	ENSG00000136160				64	0	0	60	7	10.4478
RNF219	0	genome.wustl.edu	37	13	79219069	79219069	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	79219069	79219069	A	G	SNP	RNF219	ENST00000282003	human	ensembl	74_37	-1	known	silent	c.136	p.L46	1.000	pfscan_Znf_RING	pfscan_Znf_RING	-	no_errors	RNF219	HGNC	ENSG00000152193				139	0	0	89	8	8.24742
RNF219	0	genome.wustl.edu	37	13	79219087	79219087	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	79219087	79219087	T	A	SNP	RNF219	ENST00000282003	human	ensembl	74_37	-1	known	missense	c.118	p.I40F	0.003	pfscan_Znf_RING	pfscan_Znf_RING	-	no_errors	RNF219	HGNC	ENSG00000152193				117	0	0	73	7	8.75
RBM26	0	genome.wustl.edu	37	13	79939848	79939848	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	79939848	79939848	A	G	SNP	RBM26	ENST00000438724	human	ensembl	74_37	-1	known	missense	c.1282	p.Y428H	1.000	NULL	pfam_PWI_dom,superfamily_PWI_dom,smart_Znf_CCCH,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM26	HGNC	ENSG00000139746				97	0	0	85	7	7.6087
SLITRK5	0	genome.wustl.edu	37	13	88328670	88328670	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	88328670	88328670	C	T	SNP	SLITRK5	ENST00000325089	human	ensembl	74_37	+1	known	missense	c.1027	p.R343C	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK5	HGNC	ENSG00000165300				83	0	0	79	23	22.549
SLITRK5	0	genome.wustl.edu	37	13	88328765	88328765	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	88328765	88328765	T	C	SNP	SLITRK5	ENST00000325089	human	ensembl	74_37	+1	known	silent	c.1122	p.C374	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK5	HGNC	ENSG00000165300				65	0	0	65	4	5.7971
GPC6	0	genome.wustl.edu	37	13	93879729	93879729	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	93879729	93879729	C	T	SNP	GPC6	ENST00000377047	human	ensembl	74_37	+1	known	missense	c.20	p.A7V	1.000	NULL	pfam_Glypican	-	no_errors	GPC6	HGNC	ENSG00000183098				88	0	0	72	11	13.253
DCT	0	genome.wustl.edu	37	13	95092303	95092303	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	95092303	95092303	G	A	SNP	DCT	ENST00000446125	human	ensembl	74_37	-1	known	missense	c.1508	p.P503L	0.057	NULL	pfam_Tyrosinase,superfamily_Unchr_di-copper_centre,prints_Tyrosinase	-	no_errors	DCT	HGNC	ENSG00000080166				55	0	0	62	5	7.46269
SOX21	0	genome.wustl.edu	37	13	95364135	95364135	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	95364135	95364135	A	G	SNP	SOX21	ENST00000376945	human	ensembl	74_37	-1	known	missense	c.169	p.F57L	1.000	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	pfam_HMG_box_dom,pfam_TF_SOX,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom,prints_Antifreeze_1	-	no_errors	SOX21	HGNC	ENSG00000125285				84	0	0	86	6	6.52174
HS6ST3	0	genome.wustl.edu	37	13	97484962	97484962	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	97484962	97484962	G	T	SNP	HS6ST3	ENST00000376705	human	ensembl	74_37	+1	known	missense	c.926	p.R309L	1.000	pfam_Sulfotransferase,superfamily_P-loop_NTPase	pfam_Sulfotransferase,superfamily_P-loop_NTPase	-	no_errors	HS6ST3	HGNC	ENSG00000185352				64	0	0	63	4	5.97015
RAP2A	0	genome.wustl.edu	37	13	98116606	98116606	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	98116606	98116606	C	T	SNP	RAP2A	ENST00000245304	human	ensembl	74_37	+1	known	silent	c.462	p.D154	1.000	pfam_Small_GTPase,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAP2A	HGNC	ENSG00000125249				148	0	0	90	26	22.4138
IPO5	0	genome.wustl.edu	37	13	98662198	98662198	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	98662198	98662198	T	A	SNP	IPO5	ENST00000261574	human	ensembl	74_37	+1	known	missense	c.1918	p.Y640N	1.000	superfamily_ARM-type_fold	pfam_HEAT,superfamily_ARM-type_fold,pfscan_Importin-beta_N	-	no_errors	IPO5	HGNC	ENSG00000065150				50	0	0	45	4	8.16327
IPO5	0	genome.wustl.edu	37	13	98671963	98671963	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	98671963	98671963	G	A	SNP	IPO5	ENST00000261574	human	ensembl	74_37	+1	known	missense	c.3019	p.V1007I	0.982	superfamily_ARM-type_fold	pfam_HEAT,superfamily_ARM-type_fold,pfscan_Importin-beta_N	-	no_errors	IPO5	HGNC	ENSG00000065150				109	0	0	70	24	25.5319
IPO5	0	genome.wustl.edu	37	13	98673356	98673356	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	98673356	98673356	A	G	SNP	IPO5	ENST00000261574	human	ensembl	74_37	+1	known	missense	c.3230	p.K1077R	1.000	superfamily_ARM-type_fold	pfam_HEAT,superfamily_ARM-type_fold,pfscan_Importin-beta_N	-	no_errors	IPO5	HGNC	ENSG00000065150				197	0	0	165	18	9.83607
RNF113B	0	genome.wustl.edu	37	13	98829068	98829068	+	Silent	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	98829068	98829068	C	A	SNP	RNF113B	ENST00000267291	human	ensembl	74_37	-1	known	silent	c.423	p.R141	1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF113B	HGNC	ENSG00000139797				36	0	0	45	8	15.0943
DOCK9	0	genome.wustl.edu	37	13	99461670	99461670	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	99461670	99461670	G	A	SNP	DOCK9	ENST00000339416	human	ensembl	74_37	-1	known	missense	c.5306	p.T1769I	1.000	NULL	pfam_DOCK_C,pfam_DOCK_C/D_N,pfam_Pleckstrin_homology,superfamily_ARM-type_fold,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK9	HGNC	ENSG00000088387				113	0	0	89	11	11
DOCK9	0	genome.wustl.edu	37	13	99538086	99538086	+	Splice_Site	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	99538086	99538086	C	T	SNP	DOCK9	ENST00000339416	human	ensembl	74_37	-1	known	splice_site	c.2140-1	e20-1	1.000	-	-	-	no_errors	DOCK9	HGNC	ENSG00000088387				90	0	0	61	4	6.15385
EML1	0	genome.wustl.edu	37	14	100317246	100317246	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	100317246	100317246	G	T	SNP	EML1	ENST00000334192	human	ensembl	74_37	+1	known	nonsense	c.124	p.E42*	1.000	NULL	pfam_HELP,pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like_supfam,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EML1	HGNC	ENSG00000066629				72	0	0	62	6	8.82353
EML1	0	genome.wustl.edu	37	14	100363529	100363529	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	100363529	100363529	C	T	SNP	EML1	ENST00000334192	human	ensembl	74_37	+1	known	missense	c.782	p.P261L	1.000	pfam_HELP,superfamily_Quinonprotein_ADH-like_supfam	pfam_HELP,pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like_supfam,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EML1	HGNC	ENSG00000066629				103	0	0	78	6	7.14286
EML1	0	genome.wustl.edu	37	14	100406438	100406438	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	100406438	100406438	C	T	SNP	EML1	ENST00000334192	human	ensembl	74_37	+1	known	missense	c.2494	p.R832C	1.000	smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_HELP,pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like_supfam,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EML1	HGNC	ENSG00000066629				30	0	0	24	4	14.2857
WDR25	0	genome.wustl.edu	37	14	100950346	100950346	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	100950346	100950346	G	T	SNP	WDR25	ENST00000335290	human	ensembl	74_37	+1	known	missense	c.986	p.S329I	0.707	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR25	HGNC	ENSG00000176473				150	1	0.662252	123	13	9.55882
DLK1	0	genome.wustl.edu	37	14	101198408	101198408	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	101198408	101198408	G	A	SNP	DLK1	ENST00000341267	human	ensembl	74_37	+1	known	missense	c.292	p.A98T	0.653	pfam_EG-like_dom,pfam_EGF_extracell,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_EG-like_dom,pfam_EGF_extracell,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	DLK1	HGNC	ENSG00000185559				41	0	0	58	4	6.45161
MIR493	0	genome.wustl.edu	37	14	101335474	101335474	+	RNA	SNP	G	G	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	101335474	101335474	G	C	SNP	MIR493	ENST00000385254	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MIR493	HGNC	ENSG00000207989				42	0	0	33	8	19.5122
SNORD113-2	0	genome.wustl.edu	37	14	101393741	101393741	+	RNA	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	101393741	101393741	A	T	SNP	SNORD113-2	ENST00000391082	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SNORD113-2	HGNC	ENSG00000212384				71	0	0	39	4	9.30233
MIR487A	0	genome.wustl.edu	37	14	101518813	101518813	+	RNA	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	101518813	101518813	T	C	SNP	MIR487A	ENST00000384827	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MIR487A	HGNC	ENSG00000207558				81	0	0	77	5	6.09756
MIR377	0	genome.wustl.edu	37	14	101528429	101528429	+	RNA	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	101528429	101528429	G	A	SNP	MIR377	ENST00000362145	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MIR377	HGNC	ENSG00000199015				117	0	0	103	13	11.2069
DYNC1H1	0	genome.wustl.edu	37	14	102453856	102453856	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	102453856	102453856	T	C	SNP	DYNC1H1	ENST00000360184	human	ensembl	74_37	+1	known	missense	c.2605	p.Y869H	1.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_Thioredoxin-like_fold,superfamily_Glutathione-S-Trfase_C-like,smart_AAA+_ATPase	-	no_errors	DYNC1H1	HGNC	ENSG00000197102				66	0	0	46	9	16.3636
DYNC1H1	0	genome.wustl.edu	37	14	102461592	102461592	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	102461592	102461592	G	A	SNP	DYNC1H1	ENST00000360184	human	ensembl	74_37	+1	known	silent	c.3519	p.V1173	0.996	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_Thioredoxin-like_fold,superfamily_Glutathione-S-Trfase_C-like,smart_AAA+_ATPase	-	no_errors	DYNC1H1	HGNC	ENSG00000197102				231	0	0	188	13	6.46766
DYNC1H1	0	genome.wustl.edu	37	14	102474611	102474611	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	102474611	102474611	T	C	SNP	DYNC1H1	ENST00000360184	human	ensembl	74_37	+1	known	missense	c.5914	p.S1972P	1.000	superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_Thioredoxin-like_fold,superfamily_Glutathione-S-Trfase_C-like,smart_AAA+_ATPase	-	no_errors	DYNC1H1	HGNC	ENSG00000197102				59	0	0	50	5	9.09091
DYNC1H1	0	genome.wustl.edu	37	14	102483497	102483497	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	102483497	102483497	T	C	SNP	DYNC1H1	ENST00000360184	human	ensembl	74_37	+1	known	missense	c.7921	p.Y2641H	1.000	superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_Thioredoxin-like_fold,superfamily_Glutathione-S-Trfase_C-like,smart_AAA+_ATPase	-	no_errors	DYNC1H1	HGNC	ENSG00000197102				112	0	0	123	7	5.38462
TECPR2	0	genome.wustl.edu	37	14	102901049	102901049	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	102901049	102901049	C	T	SNP	TECPR2	ENST00000359520	human	ensembl	74_37	+1	known	missense	c.1895	p.P632L	0.000	NULL	pfam_Beta-propeller_rpt_TECPR,superfamily_WD40_repeat_dom,superfamily_RCC1/BLIP-II,smart_WD40_repeat,smart_Beta-propeller_rpt_TECPR	-	no_errors	TECPR2	HGNC	ENSG00000196663				61	0	0	39	4	9.30233
TECPR2	0	genome.wustl.edu	37	14	102918744	102918744	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	102918744	102918744	G	A	SNP	TECPR2	ENST00000359520	human	ensembl	74_37	+1	known	nonsense	c.3420	p.W1140*	1.000	superfamily_RCC1/BLIP-II	pfam_Beta-propeller_rpt_TECPR,superfamily_WD40_repeat_dom,superfamily_RCC1/BLIP-II,smart_WD40_repeat,smart_Beta-propeller_rpt_TECPR	-	no_errors	TECPR2	HGNC	ENSG00000196663				36	0	0	38	5	11.6279
CDC42BPB	0	genome.wustl.edu	37	14	103452834	103452834	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	103452834	103452834	T	C	SNP	CDC42BPB	ENST00000361246	human	ensembl	74_37	-1	known	missense	c.680	p.D227G	0.997	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Citron,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Myotonic_dystrophy_kinase_coil,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,smart_CRIB_dom,pfscan_CRIB_dom,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_DAG/PE-bd	-	no_errors	CDC42BPB	HGNC	ENSG00000198752				104	0	0	90	12	11.7647
CKB	0	genome.wustl.edu	37	14	103986380	103986380	+	Splice_Site	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	103986380	103986380	C	A	SNP	CKB	ENST00000348956	human	ensembl	74_37	-1	known	splice_site	c.968-1	e7-1	1.000	-	-	-	no_errors	CKB	HGNC	ENSG00000166165				24	0	0	13	2	13.3333
TDRD9	0	genome.wustl.edu	37	14	104472992	104472992	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	104472992	104472992	T	C	SNP	TDRD9	ENST00000409874	human	ensembl	74_37	+1	known	missense	c.1889	p.L630P	0.989	pfam_Helicase-assoc_dom,smart_Helicase-assoc_dom	pfam_Helicase-assoc_dom,pfam_Tudor,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,smart_Tudor,pfscan_Tudor,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	TDRD9	HGNC	ENSG00000156414				59	0	0	40	4	9.09091
ADSSL1	0	genome.wustl.edu	37	14	105204736	105204736	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	105204736	105204736	C	T	SNP	ADSSL1	ENST00000332972	human	ensembl	74_37	+1	known	missense	c.448	p.P150S	1.000	pfam_Adenylosuccinate_synthetase,superfamily_P-loop_NTPase,smart_Adenylosuccinate_synthetase,tigrfam_Adenylosuccinate_synthetase	pfam_Adenylosuccinate_synthetase,superfamily_P-loop_NTPase,smart_Adenylosuccinate_synthetase,tigrfam_Adenylosuccinate_synthetase	-	no_errors	ADSSL1	HGNC	ENSG00000185100				71	0	0	54	7	11.4754
ADSSL1	0	genome.wustl.edu	37	14	105207003	105207003	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	105207003	105207003	G	A	SNP	ADSSL1	ENST00000332972	human	ensembl	74_37	+1	known	missense	c.671	p.R224H	0.999	pfam_Adenylosuccinate_synthetase,superfamily_P-loop_NTPase,smart_Adenylosuccinate_synthetase,tigrfam_Adenylosuccinate_synthetase	pfam_Adenylosuccinate_synthetase,superfamily_P-loop_NTPase,smart_Adenylosuccinate_synthetase,tigrfam_Adenylosuccinate_synthetase	-	no_errors	ADSSL1	HGNC	ENSG00000185100				72	0	0	65	17	20.7317
AKT1	0	genome.wustl.edu	37	14	105238712	105238712	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	105238712	105238712	T	C	SNP	AKT1	ENST00000349310	human	ensembl	74_37	-1	known	missense	c.1250	p.Y417C	0.998	superfamily_Kinase-like_dom,smart_AGC-kinase_C	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pleckstrin_homology,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom	-	no_errors	AKT1	HGNC	ENSG00000142208				77	0	0	69	6	8
PLD4	0	genome.wustl.edu	37	14	105397263	105397263	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	105397263	105397263	C	T	SNP	PLD4	ENST00000392593	human	ensembl	74_37	+1	known	missense	c.902	p.T301I	1.000	NULL	pfam_PLipase_D/transphosphatidylase,smart_PLipase_D/transphosphatidylase,pfscan_PLipase_D/transphosphatidylase	-	no_errors	PLD4	HGNC	ENSG00000166428				81	0	0	83	13	13.5417
AHNAK2	0	genome.wustl.edu	37	14	105405613	105405613	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	105405613	105405613	G	T	SNP	AHNAK2	ENST00000333244	human	ensembl	74_37	-1	known	missense	c.16175	p.P5392Q	0.807	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567				68	0	0	60	6	9.09091
AHNAK2	0	genome.wustl.edu	37	14	105408953	105408953	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	105408953	105408953	G	A	SNP	AHNAK2	ENST00000333244	human	ensembl	74_37	-1	known	missense	c.12835	p.R4279W	0.224	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567				216	0	0	230	21	8.36653
AHNAK2	0	genome.wustl.edu	37	14	105410623	105410623	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	105410623	105410623	G	T	SNP	AHNAK2	ENST00000333244	human	ensembl	74_37	-1	known	missense	c.11165	p.P3722H	0.006	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567				224	1	0.444444	255	14	5.20446
AHNAK2	0	genome.wustl.edu	37	14	105411049	105411049	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	105411049	105411049	C	T	SNP	AHNAK2	ENST00000333244	human	ensembl	74_37	-1	known	missense	c.10739	p.G3580D	0.011	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567				189	0	0	185	15	7.5
AHNAK2	0	genome.wustl.edu	37	14	105411899	105411899	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	105411899	105411899	C	T	SNP	AHNAK2	ENST00000333244	human	ensembl	74_37	-1	known	missense	c.9889	p.A3297T	0.005	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567				177	0	0	175	17	8.85417
AHNAK2	0	genome.wustl.edu	37	14	105412394	105412394	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	105412394	105412394	C	T	SNP	AHNAK2	ENST00000333244	human	ensembl	74_37	-1	known	missense	c.9394	p.A3132T	0.071	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567				95	0	0	81	7	7.95455
AHNAK2	0	genome.wustl.edu	37	14	105413160	105413160	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	105413160	105413160	C	T	SNP	AHNAK2	ENST00000333244	human	ensembl	74_37	-1	known	silent	c.8628	p.Q2876	0.038	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567				197	0	0	150	60	28.5714
AHNAK2	0	genome.wustl.edu	37	14	105413926	105413926	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	105413926	105413926	G	A	SNP	AHNAK2	ENST00000333244	human	ensembl	74_37	-1	known	missense	c.7862	p.P2621L	0.271	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567				235	1	0.423729	228	22	8.8
AHNAK2	0	genome.wustl.edu	37	14	105416427	105416427	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	105416427	105416427	G	A	SNP	AHNAK2	ENST00000333244	human	ensembl	74_37	-1	known	silent	c.5361	p.P1787	0.003	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567				222	0	0	249	28	10.1083
AHNAK2	0	genome.wustl.edu	37	14	105419623	105419623	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	105419623	105419623	T	C	SNP	AHNAK2	ENST00000333244	human	ensembl	74_37	-1	known	missense	c.2165	p.D722G	0.005	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567				169	0	0	165	22	11.7647
GPR132	0	genome.wustl.edu	37	14	105517541	105517541	+	Silent	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	105517541	105517541	G	T	SNP	GPR132	ENST00000329797	human	ensembl	74_37	-1	known	silent	c.933	p.A311	0.706	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,prints_G2A_lysphc_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	GPR132	HGNC	ENSG00000183484				44	0	0	38	7	15.5556
BTBD6	0	genome.wustl.edu	37	14	105716945	105716945	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	105716945	105716945	C	T	SNP	BTBD6	ENST00000392554	human	ensembl	74_37	+1	known	missense	c.1394	p.S465L	0.997	pfam_PHR	pfam_PHR,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	BTBD6	HGNC	ENSG00000184887				71	0	0	56	21	27.2727
OR4M1	0	genome.wustl.edu	37	14	20249085	20249085	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	20249085	20249085	A	G	SNP	OR4M1	ENST00000315957	human	ensembl	74_37	+1	known	missense	c.604	p.S202G	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4M1	HGNC	ENSG00000176299				193	0	0	190	13	6.40394
OR4N2	0	genome.wustl.edu	37	14	20296017	20296017	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	20296017	20296017	A	T	SNP	OR4N2	ENST00000315947	human	ensembl	74_37	+1	known	missense	c.410	p.N137I	0.239	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4N2	HGNC	ENSG00000176294				247	0	0	192	18	8.57143
OR4K5	0	genome.wustl.edu	37	14	20389618	20389618	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	20389618	20389618	A	G	SNP	OR4K5	ENST00000315915	human	ensembl	74_37	+1	known	missense	c.853	p.I285V	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4K5	HGNC	ENSG00000176281				162	0	0	137	8	5.51724
OR4N5	0	genome.wustl.edu	37	14	20612317	20612317	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	20612317	20612317	C	T	SNP	OR4N5	ENST00000333629	human	ensembl	74_37	+1	known	silent	c.423	p.C141	0.003	pfam_GPCR_Rhodpsn,prints_Olfact_rcpt,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR4N5	HGNC	ENSG00000184394				246	0	0	219	20	8.3682
OR11G2	0	genome.wustl.edu	37	14	20666363	20666363	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	20666363	20666363	A	G	SNP	OR11G2	ENST00000357366	human	ensembl	74_37	+1	known	missense	c.869	p.Y290C	0.998	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR11G2	HGNC	ENSG00000196832				210	0	0	205	13	5.9633
TEP1	0	genome.wustl.edu	37	14	20845495	20845495	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	20845495	20845495	A	G	SNP	TEP1	ENST00000262715	human	ensembl	74_37	-1	known	missense	c.6032	p.F2011S	0.087	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_TROVE,pfam_TEP1_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_P-loop_NTPase,smart_WD40_repeat,pfscan_NACHT_NTPase,pfscan_TROVE,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TEP1	HGNC	ENSG00000129566				35	0	0	29	5	14.7059
TEP1	0	genome.wustl.edu	37	14	20846301	20846301	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	20846301	20846301	A	C	SNP	TEP1	ENST00000262715	human	ensembl	74_37	-1	known	missense	c.5603	p.L1868R	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_TROVE,pfam_TEP1_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_P-loop_NTPase,smart_WD40_repeat,pfscan_NACHT_NTPase,pfscan_TROVE,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TEP1	HGNC	ENSG00000129566				70	0	0	83	7	7.77778
TEP1	0	genome.wustl.edu	37	14	20846985	20846985	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	20846985	20846985	G	A	SNP	TEP1	ENST00000262715	human	ensembl	74_37	-1	known	silent	c.5280	p.Y1760	0.999	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_TROVE,pfam_TEP1_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_P-loop_NTPase,smart_WD40_repeat,pfscan_NACHT_NTPase,pfscan_TROVE,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TEP1	HGNC	ENSG00000129566				71	0	0	73	8	9.87654
TEP1	0	genome.wustl.edu	37	14	20850794	20850794	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	20850794	20850794	C	T	SNP	TEP1	ENST00000262715	human	ensembl	74_37	-1	known	silent	c.4128	p.T1376	0.026	superfamily_P-loop_NTPase,pfscan_NACHT_NTPase	pfam_TROVE,pfam_TEP1_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_P-loop_NTPase,smart_WD40_repeat,pfscan_NACHT_NTPase,pfscan_TROVE,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TEP1	HGNC	ENSG00000129566				80	0	0	81	10	10.989
TEP1	0	genome.wustl.edu	37	14	20859807	20859807	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	20859807	20859807	A	G	SNP	TEP1	ENST00000262715	human	ensembl	74_37	-1	known	missense	c.2048	p.L683P	0.016	NULL	pfam_TROVE,pfam_TEP1_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_P-loop_NTPase,smart_WD40_repeat,pfscan_NACHT_NTPase,pfscan_TROVE,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TEP1	HGNC	ENSG00000129566				145	0	0	125	31	19.8718
APEX1	0	genome.wustl.edu	37	14	20924885	20924885	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	20924885	20924885	A	T	SNP	APEX1	ENST00000216714	human	ensembl	74_37	+1	known	missense	c.305	p.N102I	1.000	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,tigrfam_AP_endonuc_1	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,tigrfam_AP_endonuc_1	-	no_errors	APEX1	HGNC	ENSG00000100823				170	1	0.584795	125	11	8.08824
RNASE3	0	genome.wustl.edu	37	14	21360111	21360111	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	21360111	21360111	G	A	SNP	RNASE3	ENST00000304639	human	ensembl	74_37	+1	known	missense	c.266	p.C89Y	0.008	pfam_RNaseA_domain,superfamily_RNaseA_domain,smart_RNaseA_domain,prints_RNaseA	pfam_RNaseA_domain,superfamily_RNaseA_domain,smart_RNaseA_domain,prints_RNaseA	-	no_errors	RNASE3	HGNC	ENSG00000169397				103	0	0	89	22	19.8198
ZNF219	0	genome.wustl.edu	37	14	21561223	21561223	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	21561223	21561223	G	A	SNP	ZNF219	ENST00000360947	human	ensembl	74_37	-1	known	missense	c.233	p.A78V	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2,prints_Histamine_H3_rcpt	-	no_errors	ZNF219	HGNC	ENSG00000165804				15	0	0	13	4	23.5294
HNRNPC	0	genome.wustl.edu	37	14	21679995	21679995	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	21679995	21679995	A	T	SNP	HNRNPC	ENST00000320084	human	ensembl	74_37	-1	known	missense	c.650	p.I217N	1.000	superfamily_Regulat_G_prot_signal_superfam,pirsf_hnRNP_C_Raly	pfam_RRM_dom,superfamily_Regulat_G_prot_signal_superfam,smart_RRM_dom,pirsf_hnRNP_C_Raly,pfscan_RRM_dom	-	no_errors	HNRNPC	HGNC	ENSG00000092199				222	0	0	150	11	6.8323
CHD8	0	genome.wustl.edu	37	14	21860770	21860770	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	21860770	21860770	A	G	SNP	CHD8	ENST00000399982	human	ensembl	74_37	-1	known	missense	c.6667	p.S2223P	1.000	NULL	pfam_SNF2_N,pfam_Chromo_domain,pfam_BRK_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD8	HGNC	ENSG00000100888				157	0	0	149	12	7.45342
TOX4	0	genome.wustl.edu	37	14	21961062	21961062	+	Silent	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	21961062	21961062	T	A	SNP	TOX4	ENST00000262709	human	ensembl	74_37	+1	known	silent	c.1287	p.A429	0.939	NULL	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	TOX4	HGNC	ENSG00000092203				181	1	0.549451	156	11	6.58683
OXA1L	0	genome.wustl.edu	37	14	23239726	23239726	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	23239726	23239726	G	A	SNP	OXA1L	ENST00000285848	human	ensembl	74_37	+1	known	silent	c.906	p.V302	1.000	pfam_Membrane_insert_OXA1/ALB3/YidC,tigrfam_Membr_insert_YidC/Oxa1_C	pfam_Membrane_insert_OXA1/ALB3/YidC,tigrfam_Membr_insert_YidC/Oxa1_C	-	no_errors	OXA1L	HGNC	ENSG00000155463				114	0	0	105	11	9.48276
C14orf93	0	genome.wustl.edu	37	14	23467914	23467914	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	23467914	23467914	T	C	SNP	C14orf93	ENST00000299088	human	ensembl	74_37	-1	known	missense	c.319	p.I107V	0.000	NULL	NULL	-	no_errors	C14orf93	HGNC	ENSG00000100802				63	0	0	72	5	6.49351
ACIN1	0	genome.wustl.edu	37	14	23530297	23530297	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	23530297	23530297	C	A	SNP	ACIN1	ENST00000262710	human	ensembl	74_37	-1	known	missense	c.3695	p.S1232I	1.000	NULL	pfam_SAP_dom,smart_SAP_dom,pfscan_SAP_dom	-	no_errors	ACIN1	HGNC	ENSG00000100813				47	0	0	35	8	18.6047
HOMEZ	0	genome.wustl.edu	37	14	23745847	23745847	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	23745847	23745847	C	G	SNP	HOMEZ	ENST00000431326	human	ensembl	74_37	-1	known	missense	c.596	p.S199T	0.989	NULL	superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	HOMEZ	HGNC	ENSG00000215271				148	0	0	136	27	16.5644
MYH6	0	genome.wustl.edu	37	14	23855309	23855309	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	23855309	23855309	C	T	SNP	MYH6	ENST00000356287	human	ensembl	74_37	-1	known	missense	c.4991	p.R1664H	0.223	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH6	HGNC	ENSG00000197616				43	0	0	36	3	7.69231
MYH6	0	genome.wustl.edu	37	14	23858074	23858074	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	23858074	23858074	T	C	SNP	MYH6	ENST00000356287	human	ensembl	74_37	-1	known	missense	c.4169	p.E1390G	1.000	pfam_Myosin_tail,superfamily_Prefoldin	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH6	HGNC	ENSG00000197616				74	0	0	80	6	6.97674
MYH6	0	genome.wustl.edu	37	14	23868101	23868101	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	23868101	23868101	G	A	SNP	MYH6	ENST00000356287	human	ensembl	74_37	-1	known	missense	c.1727	p.A576V	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH6	HGNC	ENSG00000197616				75	0	0	62	22	26.1905
AP1G2	0	genome.wustl.edu	37	14	24029026	24029026	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	24029026	24029026	C	T	SNP	AP1G2	ENST00000308724	human	ensembl	74_37	-1	known	missense	c.2290	p.D764N	0.975	pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_Coatomer/clathrin_app_Ig-like,smart_Clathrin_a/b/g-adaptin_app_Ig,pirsf_AP1_complex_gsu,pfscan_Clathrin_g-adaptin_app	pfam_Clathrin/coatomer_adapt-like_N,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ARM-type_fold,superfamily_Coatomer/clathrin_app_Ig-like,smart_Clathrin_a/b/g-adaptin_app_Ig,pirsf_AP1_complex_gsu,pfscan_Clathrin_g-adaptin_app	-	no_errors	AP1G2	HGNC	ENSG00000213983				37	0	0	31	5	13.8889
PCK2	0	genome.wustl.edu	37	14	24569212	24569212	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	24569212	24569212	C	T	SNP	PCK2	ENST00000216780	human	ensembl	74_37	+1	known	missense	c.1024	p.R342W	1.000	pfam_PEP_carboxykinase_GTP,pirsf_PEP_carboxykinase_GTP	pfam_PEP_carboxykinase_GTP,superfamily_PEP_carboxykinase_N,pirsf_PEP_carboxykinase_GTP	-	no_errors	PCK2	HGNC	ENSG00000100889				172	0	0	192	14	6.79612
FITM1	0	genome.wustl.edu	37	14	24600921	24600921	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	24600921	24600921	C	A	SNP	FITM1	ENST00000267426	human	ensembl	74_37	+1	known	missense	c.149	p.P50H	1.000	NULL	pfam_FIT	-	no_errors	FITM1	HGNC	ENSG00000139914				76	0	0	65	5	7.14286
IRF9	0	genome.wustl.edu	37	14	24632717	24632717	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	24632717	24632717	T	C	SNP	IRF9	ENST00000396864	human	ensembl	74_37	+1	known	silent	c.495	p.N165	0.033	NULL	pfam_Interferon_reg_fact_DNA-bd_dom,pfam_Interferon_reg_factor-3,superfamily_SMAD_FHA_domain,smart_Interferon_reg_fact_DNA-bd_dom,prints_Interferon_reg_fact_DNA-bd_dom	-	no_errors	IRF9	HGNC	ENSG00000213928				76	0	0	72	8	10
GMPR2	0	genome.wustl.edu	37	14	24705334	24705334	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	24705334	24705334	G	A	SNP	GMPR2	ENST00000348719	human	ensembl	74_37	+1	known	silent	c.453	p.Q151	0.981	pfam_IMP_DH_GMPRt,tigrfam_GMP_reduct1	pfam_IMP_DH_GMPRt,pfam_FMN-dep_DH,tigrfam_GMP_reduct1	-	no_errors	GMPR2	HGNC	ENSG00000100938				135	0	0	105	12	10.2564
RIPK3	0	genome.wustl.edu	37	14	24808444	24808444	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	24808444	24808444	T	A	SNP	RIPK3	ENST00000216274	human	ensembl	74_37	-1	known	missense	c.248	p.N83I	0.008	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	RIPK3	HGNC	ENSG00000129465				98	0	0	99	6	5.71429
NFATC4	0	genome.wustl.edu	37	14	24839280	24839280	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	24839280	24839280	A	T	SNP	NFATC4	ENST00000413692	human	ensembl	74_37	+1	known	missense	c.865	p.T289S	1.000	NULL	pfam_RHD,pfam_IPT,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT,pfscan_RHD,prints_NFAT	-	no_errors	NFATC4	HGNC	ENSG00000100968				25	0	0	20	7	25.9259
CTSG	0	genome.wustl.edu	37	14	25043577	25043577	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	25043577	25043577	T	C	SNP	CTSG	ENST00000216336	human	ensembl	74_37	-1	known	silent	c.468	p.T156	0.000	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	CTSG	HGNC	ENSG00000100448				69	0	0	70	8	10.2564
CTSG	0	genome.wustl.edu	37	14	25044505	25044505	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	25044505	25044505	C	T	SNP	CTSG	ENST00000216336	human	ensembl	74_37	-1	known	missense	c.169	p.D57N	1.000	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	CTSG	HGNC	ENSG00000100448				80	0	0	79	5	5.95238
NOVA1	0	genome.wustl.edu	37	14	26918159	26918159	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	26918159	26918159	A	G	SNP	NOVA1	ENST00000539517	human	ensembl	74_37	-1	known	missense	c.530	p.I177T	1.000	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	NOVA1	HGNC	ENSG00000139910				161	1	0.617284	140	8	5.40541
G2E3	0	genome.wustl.edu	37	14	31050312	31050312	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	31050312	31050312	A	G	SNP	G2E3	ENST00000206595	human	ensembl	74_37	+1	known	silent	c.27	p.S9	0.970	NULL	pfam_HECT,superfamily_HECT,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_HECT,pfscan_HECT	-	no_errors	G2E3	HGNC	ENSG00000092140				132	0	0	75	10	11.7647
G2E3	0	genome.wustl.edu	37	14	31071242	31071242	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	31071242	31071242	T	A	SNP	G2E3	ENST00000206595	human	ensembl	74_37	+1	known	missense	c.915	p.N305K	0.001	NULL	pfam_HECT,superfamily_HECT,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_HECT,pfscan_HECT	-	no_errors	G2E3	HGNC	ENSG00000092140				85	0	0	72	4	5.26316
SCFD1	0	genome.wustl.edu	37	14	31191743	31191743	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	31191743	31191743	A	G	SNP	SCFD1	ENST00000458591	human	ensembl	74_37	+1	known	missense	c.1814	p.Q605R	1.000	pfam_Sec1-like,superfamily_Sec1-like	pfam_Sec1-like,superfamily_Sec1-like	-	no_errors	SCFD1	HGNC	ENSG00000092108				125	0	0	84	9	9.67742
HEATR5A	0	genome.wustl.edu	37	14	31856444	31856444	+	Nonsense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	31856444	31856444	A	T	SNP	HEATR5A	ENST00000389961	human	ensembl	74_37	-1	known	nonsense	c.1053	p.C351*	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	HEATR5A	HGNC	ENSG00000129493				134	0	0	99	29	22.6562
ARHGAP5	0	genome.wustl.edu	37	14	32561822	32561822	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	32561822	32561822	G	A	SNP	ARHGAP5	ENST00000345122	human	ensembl	74_37	+1	known	nonsense	c.1947	p.W649*	1.000	NULL	pfam_RhoGAP_dom,pfam_FF_domain,pfam_Small_GTPase,superfamily_Rho_GTPase_activation_prot,superfamily_P-loop_NTPase,superfamily_FF_domain,smart_FF_domain,smart_RhoGAP_dom,pfscan_RhoGAP_dom,prints_Small_GTPase	-	no_errors	ARHGAP5	HGNC	ENSG00000100852				189	0	0	136	8	5.55556
ARHGAP5	0	genome.wustl.edu	37	14	32562224	32562224	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	32562224	32562224	C	T	SNP	ARHGAP5	ENST00000345122	human	ensembl	74_37	+1	known	silent	c.2349	p.C783	1.000	NULL	pfam_RhoGAP_dom,pfam_FF_domain,pfam_Small_GTPase,superfamily_Rho_GTPase_activation_prot,superfamily_P-loop_NTPase,superfamily_FF_domain,smart_FF_domain,smart_RhoGAP_dom,pfscan_RhoGAP_dom,prints_Small_GTPase	-	no_errors	ARHGAP5	HGNC	ENSG00000100852				138	0	0	75	27	26.4706
ARHGAP5	0	genome.wustl.edu	37	14	32562668	32562668	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	32562668	32562668	T	C	SNP	ARHGAP5	ENST00000345122	human	ensembl	74_37	+1	known	silent	c.2793	p.F931	0.998	NULL	pfam_RhoGAP_dom,pfam_FF_domain,pfam_Small_GTPase,superfamily_Rho_GTPase_activation_prot,superfamily_P-loop_NTPase,superfamily_FF_domain,smart_FF_domain,smart_RhoGAP_dom,pfscan_RhoGAP_dom,prints_Small_GTPase	-	no_errors	ARHGAP5	HGNC	ENSG00000100852				107	0	0	67	5	6.94444
AKAP6	0	genome.wustl.edu	37	14	33290606	33290606	+	Splice_Site	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	33290606	33290606	A	G	SNP	AKAP6	ENST00000280979	human	ensembl	74_37	+1	known	splice_site	c.3589-2	e12-2	1.000	-	-	-	no_errors	AKAP6	HGNC	ENSG00000151320				88	0	0	67	9	11.8421
BAZ1A	0	genome.wustl.edu	37	14	35264961	35264961	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	35264961	35264961	T	C	SNP	BAZ1A	ENST00000360310	human	ensembl	74_37	-1	known	missense	c.1139	p.K380R	1.000	NULL	pfam_WSTF_Acf1_Cbp146,pfam_Bromodomain,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_WSTF_Acf1_Cbp146,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ1A	HGNC	ENSG00000198604				95	0	0	57	4	6.55738
SRP54	0	genome.wustl.edu	37	14	35487907	35487907	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	35487907	35487907	C	T	SNP	SRP54	ENST00000216774	human	ensembl	74_37	+1	known	missense	c.983	p.T328M	1.000	pfam_Signal_recog_particle_SRP54_M,superfamily_Signal_recog_particle_SRP54_M,tigrfam_SRP54_euk	pfam_SRP54_GTPase_dom,pfam_Signal_recog_particle_SRP54_M,pfam_Signal_recog_particl_SRP54_hlx,pfam_CobW/HypB/UreG_dom,pfam_CobQ/CobB/MinD/ParA_Nub-bd_dom,superfamily_P-loop_NTPase,superfamily_Signal_recog_particle_SRP54_M,superfamily_Signal_recog_particl_SRP54_hlx,smart_Signal_recog_particl_SRP54_hlx,smart_AAA+_ATPase,smart_SRP54_GTPase_dom,tigrfam_SRP54_euk	-	no_errors	SRP54	HGNC	ENSG00000100883				96	0	0	52	4	7.14286
PSMA6	0	genome.wustl.edu	37	14	35780027	35780027	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	35780027	35780027	A	G	SNP	PSMA6	ENST00000261479	human	ensembl	74_37	+1	known	missense	c.335	p.D112G	1.000	pfam_Proteasome_sua/b	pfam_Proteasome_sua/b,pfam_Proteasome_asu_N,smart_Proteasome_asu_N	-	no_errors	PSMA6	HGNC	ENSG00000100902				94	0	0	65	4	5.7971
PSMA6	0	genome.wustl.edu	37	14	35780041	35780041	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	35780041	35780041	A	G	SNP	PSMA6	ENST00000261479	human	ensembl	74_37	+1	known	missense	c.349	p.R117G	1.000	pfam_Proteasome_sua/b	pfam_Proteasome_sua/b,pfam_Proteasome_asu_N,smart_Proteasome_asu_N	-	no_errors	PSMA6	HGNC	ENSG00000100902				97	0	0	69	4	5.47945
INSM2	0	genome.wustl.edu	37	14	36004685	36004685	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	36004685	36004685	C	T	SNP	INSM2	ENST00000307169	human	ensembl	74_37	+1	known	silent	c.1227	p.R409	0.998	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	INSM2	HGNC	ENSG00000168348				57	0	0	55	4	6.77966
RALGAPA1	0	genome.wustl.edu	37	14	36143454	36143454	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	36143454	36143454	T	C	SNP	RALGAPA1	ENST00000258840	human	ensembl	74_37	-1	known	missense	c.3472	p.N1158D	1.000	superfamily_ARM-type_fold	pfam_Rap_GAP_dom,superfamily_ARM-type_fold,pfscan_Rap_GAP_dom	-	no_errors	RALGAPA1	HGNC	ENSG00000174373				69	0	0	26	5	16.129
RALGAPA1	0	genome.wustl.edu	37	14	36221254	36221254	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	36221254	36221254	T	C	SNP	RALGAPA1	ENST00000258840	human	ensembl	74_37	-1	known	missense	c.778	p.N260D	1.000	NULL	pfam_Rap_GAP_dom,superfamily_ARM-type_fold,pfscan_Rap_GAP_dom	-	no_errors	RALGAPA1	HGNC	ENSG00000174373				89	0	0	41	7	14.5833
MBIP	0	genome.wustl.edu	37	14	36784000	36784000	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	36784000	36784000	A	G	SNP	MBIP	ENST00000416007	human	ensembl	74_37	-1	known	missense	c.371	p.L124P	0.000	NULL	NULL	-	no_errors	MBIP	HGNC	ENSG00000151332				156	0	0	97	10	9.34579
PAX9	0	genome.wustl.edu	37	14	37132275	37132275	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	37132275	37132275	T	C	SNP	PAX9	ENST00000361487	human	ensembl	74_37	+1	known	missense	c.178	p.Y60H	1.000	pfam_Paired_dom,superfamily_Homeodomain-like,smart_Paired_dom,pfscan_Paired_dom,prints_Paired_dom	pfam_Paired_dom,superfamily_Homeodomain-like,smart_Paired_dom,pfscan_Paired_dom,prints_Paired_dom	-	no_errors	PAX9	HGNC	ENSG00000198807				39	0	0	41	4	8.88889
SLC25A21	0	genome.wustl.edu	37	14	37180557	37180557	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	37180557	37180557	T	C	SNP	SLC25A21	ENST00000331299	human	ensembl	74_37	-1	known	missense	c.569	p.Y190C	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	-	no_errors	SLC25A21	HGNC	ENSG00000183032				68	0	0	55	14	20.2899
SLC25A21	0	genome.wustl.edu	37	14	37194876	37194876	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	37194876	37194876	C	T	SNP	SLC25A21	ENST00000331299	human	ensembl	74_37	-1	known	missense	c.337	p.A113T	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	-	no_errors	SLC25A21	HGNC	ENSG00000183032				59	0	0	43	7	14
MIPOL1	0	genome.wustl.edu	37	14	37892127	37892127	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	37892127	37892127	A	G	SNP	MIPOL1	ENST00000327441	human	ensembl	74_37	+1	known	missense	c.1004	p.E335G	1.000	NULL	NULL	-	no_errors	MIPOL1	HGNC	ENSG00000151338				33	0	0	19	3	13.6364
MIPOL1	0	genome.wustl.edu	37	14	37969207	37969207	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	37969207	37969207	A	G	SNP	MIPOL1	ENST00000327441	human	ensembl	74_37	+1	known	missense	c.1126	p.I376V	0.854	NULL	NULL	-	no_errors	MIPOL1	HGNC	ENSG00000151338				123	0	0	93	13	12.2642
TTC6	0	genome.wustl.edu	37	14	38265994	38265994	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	38265994	38265994	C	T	SNP	TTC6	ENST00000478811	human	ensembl	74_37	+1	known	missense	c.64	p.L22F	0.945	NULL	pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC6	HGNC	ENSG00000139865				115	1	0.862069	79	10	11.236
TTC6	0	genome.wustl.edu	37	14	38295401	38295401	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	38295401	38295401	C	T	SNP	TTC6	ENST00000478811	human	ensembl	74_37	+1	known	missense	c.1169	p.A390V	0.793	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC6	HGNC	ENSG00000139865				90	0	0	61	4	6.15385
TTC6	0	genome.wustl.edu	37	14	38296418	38296418	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	38296418	38296418	A	G	SNP	TTC6	ENST00000478811	human	ensembl	74_37	+1	known	silent	c.1338	p.E446	0.999	pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC6	HGNC	ENSG00000139865				67	0	0	66	7	9.58904
CLEC14A	0	genome.wustl.edu	37	14	38724773	38724773	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	38724773	38724773	A	T	SNP	CLEC14A	ENST00000342213	human	ensembl	74_37	-1	known	missense	c.455	p.V152D	0.002	superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	CLEC14A	HGNC	ENSG00000176435				39	0	0	42	6	12.5
CTAGE5	0	genome.wustl.edu	37	14	39771359	39771359	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	39771359	39771359	G	A	SNP	CTAGE5	ENST00000396158	human	ensembl	74_37	+1	known	missense	c.837	p.M279I	1.000	NULL	NULL	-	no_errors	CTAGE5	HGNC	ENSG00000150527				153	0	0	128	9	6.56934
FBXO33	0	genome.wustl.edu	37	14	39871660	39871660	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	39871660	39871660	T	G	SNP	FBXO33	ENST00000298097	human	ensembl	74_37	-1	known	missense	c.655	p.S219R	1.000	NULL	pfam_F-box_dom,superfamily_F-box_dom,smart_F-box_dom,pfscan_F-box_dom	-	no_errors	FBXO33	HGNC	ENSG00000165355				84	0	0	47	3	6
FSCB	0	genome.wustl.edu	37	14	44975832	44975832	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	44975832	44975832	T	C	SNP	FSCB	ENST00000340446	human	ensembl	74_37	-1	known	missense	c.359	p.N120S	0.000	NULL	NULL	-	no_errors	FSCB	HGNC	ENSG00000189139				249	0	0	199	14	6.57277
FSCB	0	genome.wustl.edu	37	14	44976056	44976056	+	Silent	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	44976056	44976056	G	T	SNP	FSCB	ENST00000340446	human	ensembl	74_37	-1	known	silent	c.135	p.A45	0.435	NULL	NULL	-	no_errors	FSCB	HGNC	ENSG00000189139				184	0	0	134	11	7.58621
KLHL28	0	genome.wustl.edu	37	14	45398323	45398323	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	45398323	45398323	T	C	SNP	KLHL28	ENST00000396128	human	ensembl	74_37	-1	known	missense	c.1624	p.T542A	1.000	pfam_Kelch_1,pfam_Kelch_2,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL28	HGNC	ENSG00000179454				117	0	0	102	11	9.73451
FAM179B	0	genome.wustl.edu	37	14	45432481	45432481	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	45432481	45432481	G	A	SNP	FAM179B	ENST00000361577	human	ensembl	74_37	+1	known	missense	c.857	p.R286Q	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	FAM179B	HGNC	ENSG00000198718				140	0	0	129	12	8.51064
FAM179B	0	genome.wustl.edu	37	14	45433203	45433203	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	45433203	45433203	C	T	SNP	FAM179B	ENST00000361577	human	ensembl	74_37	+1	known	missense	c.1579	p.R527C	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	FAM179B	HGNC	ENSG00000198718				177	0	0	137	10	6.80272
FANCM	0	genome.wustl.edu	37	14	45645393	45645393	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	45645393	45645393	G	A	SNP	FANCM	ENST00000267430	human	ensembl	74_37	+1	known	missense	c.3436	p.D1146N	0.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Restrct_endonuc-II-like,superfamily_RuvA_2-like,smart_Helicase_ATP-bd,smart_Helicase_C,smart_ERCC4_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	FANCM	HGNC	ENSG00000187790				152	0	0	116	9	7.2
FANCM	0	genome.wustl.edu	37	14	45658140	45658140	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	45658140	45658140	A	G	SNP	FANCM	ENST00000267430	human	ensembl	74_37	+1	known	missense	c.4915	p.K1639E	0.066	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Restrct_endonuc-II-like,superfamily_RuvA_2-like,smart_Helicase_ATP-bd,smart_Helicase_C,smart_ERCC4_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	FANCM	HGNC	ENSG00000187790				129	1	0.769231	65	4	5.7971
MIS18BP1	0	genome.wustl.edu	37	14	45675336	45675336	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	45675336	45675336	A	T	SNP	MIS18BP1	ENST00000310806	human	ensembl	74_37	-1	known	missense	c.3190	p.Y1064N	0.072	NULL	pfam_SANTA,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	MIS18BP1	HGNC	ENSG00000129534				61	0	0	44	4	8.33333
RPS29	0	genome.wustl.edu	37	14	50050329	50050329	+	RNA	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	50050329	50050329	T	A	SNP	RPS29	ENST00000557111	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	RPS29	HGNC	ENSG00000213741				81	0	0	41	19	31.6667
DNAAF2	0	genome.wustl.edu	37	14	50101028	50101028	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	50101028	50101028	G	A	SNP	DNAAF2	ENST00000298292	human	ensembl	74_37	-1	known	silent	c.840	p.P280	0.986	pfam_PIH	pfam_PIH	-	no_errors	DNAAF2	HGNC	ENSG00000165506				40	0	0	34	3	8.10811
NEMF	0	genome.wustl.edu	37	14	50255864	50255864	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	50255864	50255864	C	T	SNP	NEMF	ENST00000298310	human	ensembl	74_37	-1	known	silent	c.2895	p.K965	1.000	NULL	pfam_Fibro-bd_N,pfam_DUF3441,pfam_DUF814,superfamily_FlgN-like_dom	-	no_errors	NEMF	HGNC	ENSG00000165525				146	0	0	115	8	6.50407
C14orf183	0	genome.wustl.edu	37	14	50550523	50550523	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	50550523	50550523	G	A	SNP	C14orf183	ENST00000305273	human	ensembl	74_37	-1	novel	missense	c.821	p.T274M	0.000	NULL	NULL	-	no_errors	C14orf183	HGNC	ENSG00000168260				37	0	0	58	7	10.7692
SOS2	0	genome.wustl.edu	37	14	50647365	50647365	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	50647365	50647365	C	A	SNP	SOS2	ENST00000216373	human	ensembl	74_37	-1	known	missense	c.894	p.Q298H	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Histone_core_D,superfamily_Ras_GEF_dom,superfamily_Histone-fold,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_Pleckstrin_homology,pfscan_DH-domain,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	SOS2	HGNC	ENSG00000100485				45	0	0	30	3	9.09091
MAP4K5	0	genome.wustl.edu	37	14	50904618	50904618	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	50904618	50904618	A	G	SNP	MAP4K5	ENST00000013125	human	ensembl	74_37	-1	known	missense	c.1817	p.L606P	1.000	pfam_Citron,smart_Citron	pfam_Citron,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_dom	-	no_errors	MAP4K5	HGNC	ENSG00000012983				143	0	0	103	8	7.20721
NIN	0	genome.wustl.edu	37	14	51210974	51210974	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	51210974	51210974	C	A	SNP	NIN	ENST00000245441	human	ensembl	74_37	-1	known	missense	c.5174	p.S1725I	0.880	NULL	superfamily_tRNA-bd_arm,pfscan_EF_hand_dom	-	no_errors	NIN	HGNC	ENSG00000100503				163	0	0	142	12	7.79221
NIN	0	genome.wustl.edu	37	14	51245521	51245521	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	51245521	51245521	T	C	SNP	NIN	ENST00000245441	human	ensembl	74_37	-1	known	missense	c.437	p.H146R	1.000	NULL	superfamily_tRNA-bd_arm,pfscan_EF_hand_dom	-	no_errors	NIN	HGNC	ENSG00000100503				105	0	0	85	8	8.60215
ABHD12B	0	genome.wustl.edu	37	14	51352376	51352376	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	51352376	51352376	A	G	SNP	ABHD12B	ENST00000337334	human	ensembl	74_37	+1	known	silent	c.531	p.R177	1.000	pfam_AB_hydrolase_1,pfam_Peptidase_S9,pfam_X-Pro-like_dom	pfam_AB_hydrolase_1,pfam_Peptidase_S9,pfam_X-Pro-like_dom	-	no_errors	ABHD12B	HGNC	ENSG00000131969				133	0	0	107	10	8.54701
FRMD6	0	genome.wustl.edu	37	14	52194524	52194524	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	52194524	52194524	G	A	SNP	FRMD6	ENST00000344768	human	ensembl	74_37	+1	known	missense	c.1646	p.R549K	1.000	NULL	pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	-	no_errors	FRMD6	HGNC	ENSG00000139926				96	0	0	67	4	5.6338
NID2	0	genome.wustl.edu	37	14	52495506	52495506	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	52495506	52495506	G	A	SNP	NID2	ENST00000216286	human	ensembl	74_37	-1	known	missense	c.2464	p.P822S	0.080	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_G2_nidogen/fibulin_G2F,pfam_LDLR_classB_rpt,pfam_Nidogen_extracell_dom,pfam_Thyroglobulin_1,pfam_EGF-like_Ca-bd_dom,superfamily_GFP,superfamily_Thyroglobulin_1,smart_Nidogen_extracell_dom,smart_EG-like_dom,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd_dom,smart_Thyroglobulin_1,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDLR_classB_rpt,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thyroglobulin_1	-	no_errors	NID2	HGNC	ENSG00000087303				91	0	0	55	5	8.33333
NID2	0	genome.wustl.edu	37	14	52534616	52534616	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	52534616	52534616	G	A	SNP	NID2	ENST00000216286	human	ensembl	74_37	-1	known	missense	c.494	p.A165V	1.000	smart_Nidogen_extracell_dom	pfam_G2_nidogen/fibulin_G2F,pfam_LDLR_classB_rpt,pfam_Nidogen_extracell_dom,pfam_Thyroglobulin_1,pfam_EGF-like_Ca-bd_dom,superfamily_GFP,superfamily_Thyroglobulin_1,smart_Nidogen_extracell_dom,smart_EG-like_dom,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd_dom,smart_Thyroglobulin_1,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDLR_classB_rpt,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thyroglobulin_1	-	no_errors	NID2	HGNC	ENSG00000087303				122	0	0	129	12	8.51064
TXNDC16	0	genome.wustl.edu	37	14	52949652	52949652	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	52949652	52949652	A	G	SNP	TXNDC16	ENST00000281741	human	ensembl	74_37	-1	known	silent	c.1140	p.V380	0.998	superfamily_Thioredoxin-like_fold	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	-	no_errors	TXNDC16	HGNC	ENSG00000087301				78	0	0	54	5	8.47458
TXNDC16	0	genome.wustl.edu	37	14	52981596	52981596	+	Splice_Site	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	52981596	52981596	A	G	SNP	TXNDC16	ENST00000281741	human	ensembl	74_37	-1	known	splice_site	c.605+2	e6+2	1.000	-	-	-	no_errors	TXNDC16	HGNC	ENSG00000087301				196	0	0	159	14	8.09249
ERO1L	0	genome.wustl.edu	37	14	53133178	53133178	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	53133178	53133178	G	T	SNP	ERO1L	ENST00000395686	human	ensembl	74_37	-1	known	missense	c.544	p.L182I	1.000	pfam_Ero1,pirsf_Ero1	pfam_Ero1,pirsf_Ero1	-	no_errors	ERO1L	HGNC	ENSG00000197930				38	0	0	31	2	6.06061
DDHD1	0	genome.wustl.edu	37	14	53570477	53570477	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	53570477	53570477	A	T	SNP	DDHD1	ENST00000323669	human	ensembl	74_37	-1	known	missense	c.936	p.H312Q	1.000	NULL	pfam_DDHD,pfscan_DDHD	-	no_errors	DDHD1	HGNC	ENSG00000100523				95	0	0	50	6	10.7143
BMP4	0	genome.wustl.edu	37	14	54417455	54417455	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	54417455	54417455	G	A	SNP	BMP4	ENST00000245451	human	ensembl	74_37	-1	known	silent	c.522	p.G174	0.992	pfam_TGF-b_N	pfam_TGF-b_N,pfam_TGF-b_C,smart_TGF-b_C	-	no_errors	BMP4	HGNC	ENSG00000125378				37	0	0	44	5	10.2041
BMP4	0	genome.wustl.edu	37	14	54418876	54418876	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	54418876	54418876	C	T	SNP	BMP4	ENST00000245451	human	ensembl	74_37	-1	known	missense	c.65	p.S22N	1.000	NULL	pfam_TGF-b_N,pfam_TGF-b_C,smart_TGF-b_C	-	no_errors	BMP4	HGNC	ENSG00000125378				69	0	0	87	11	11.2245
SOCS4	0	genome.wustl.edu	37	14	55510474	55510474	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	55510474	55510474	A	G	SNP	SOCS4	ENST00000339298	human	ensembl	74_37	+1	known	missense	c.715	p.T239A	1.000	NULL	pfam_SOCS,pfam_SOCS_C,pfam_SH2,smart_SH2,smart_SOCS_C,pfscan_SOCS_C,pfscan_SH2	-	no_errors	SOCS4	HGNC	ENSG00000180008				89	0	0	54	7	11.4754
SOCS4	0	genome.wustl.edu	37	14	55510709	55510709	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	55510709	55510709	A	G	SNP	SOCS4	ENST00000339298	human	ensembl	74_37	+1	known	missense	c.950	p.D317G	1.000	pfam_SH2,smart_SH2,pfscan_SH2	pfam_SOCS,pfam_SOCS_C,pfam_SH2,smart_SH2,smart_SOCS_C,pfscan_SOCS_C,pfscan_SH2	-	no_errors	SOCS4	HGNC	ENSG00000180008				152	1	0.653595	116	16	12.1212
LGALS3	0	genome.wustl.edu	37	14	55609411	55609411	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	55609411	55609411	T	C	SNP	LGALS3	ENST00000254301	human	ensembl	74_37	+1	known	missense	c.541	p.W181R	0.991	pfam_Galectin_CRD,superfamily_ConA-like_lec_gl_sf,smart_Galectin_CRD	pfam_Galectin_CRD,superfamily_ConA-like_lec_gl_sf,smart_Galectin_CRD	-	no_errors	LGALS3	HGNC	ENSG00000131981				127	0	0	95	6	5.94059
TBPL2	0	genome.wustl.edu	37	14	55907245	55907245	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	55907245	55907245	G	A	SNP	TBPL2	ENST00000247219	human	ensembl	74_37	-1	known	missense	c.19	p.P7S	0.000	NULL	pfam_TBP,prints_TBP	-	no_errors	TBPL2	HGNC	ENSG00000182521				31	0	0	42	5	10.6383
TMEM260	0	genome.wustl.edu	37	14	57070532	57070532	+	Splice_Site	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	57070532	57070532	G	A	SNP	TMEM260	ENST00000261556	human	ensembl	74_37	+1	known	splice_site	c.345-1	e4-1	1.000	-	-	-	no_errors	TMEM260	HGNC	ENSG00000070269				146	0	0	103	9	8.03571
TMEM260	0	genome.wustl.edu	37	14	57088287	57088287	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	57088287	57088287	T	C	SNP	TMEM260	ENST00000261556	human	ensembl	74_37	+1	known	missense	c.1265	p.F422S	1.000	NULL	pfam_DUF2723	-	no_errors	TMEM260	HGNC	ENSG00000070269				111	0	0	83	7	7.77778
OTX2	0	genome.wustl.edu	37	14	57271037	57271037	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	57271037	57271037	G	A	SNP	OTX2	ENST00000339475	human	ensembl	74_37	-1	known	missense	c.142	p.R48W	0.775	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Otx_TF_C,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Otx2_TF,prints_Otx_TF	-	no_errors	OTX2	HGNC	ENSG00000165588				41	0	0	42	18	30
EXOC5	0	genome.wustl.edu	37	14	57675501	57675501	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	57675501	57675501	T	C	SNP	EXOC5	ENST00000413566	human	ensembl	74_37	-1	known	silent	c.1953	p.L651	1.000	pfam_Sec10-like	pfam_Sec10-like	-	no_errors	EXOC5	HGNC	ENSG00000070367				45	0	0	53	3	5.35714
EXOC5	0	genome.wustl.edu	37	14	57713439	57713439	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	57713439	57713439	T	C	SNP	EXOC5	ENST00000413566	human	ensembl	74_37	-1	known	missense	c.260	p.K87R	1.000	NULL	pfam_Sec10-like	-	no_errors	EXOC5	HGNC	ENSG00000070367				262	0	0	161	9	5.29412
NAA30	0	genome.wustl.edu	37	14	57876098	57876098	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	57876098	57876098	T	C	SNP	NAA30	ENST00000556492	human	ensembl	74_37	+1	known	missense	c.953	p.V318A	1.000	pfam_GNAT_dom,pfam_FR47,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	pfam_GNAT_dom,pfam_FR47,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	-	no_errors	NAA30	HGNC	ENSG00000139977				64	0	0	28	3	9.67742
SLC35F4	0	genome.wustl.edu	37	14	58038710	58038710	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	58038710	58038710	C	T	SNP	SLC35F4	ENST00000339762	human	ensembl	74_37	-1	known	missense	c.943	p.G315S	1.000	pfam_DMT,pfam_SLC35_F1/F2/F6	pfam_DMT,pfam_SLC35_F1/F2/F6	-	no_errors	SLC35F4	HGNC	ENSG00000151812				29	0	0	18	7	28
ACTR10	0	genome.wustl.edu	37	14	58701258	58701258	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	58701258	58701258	A	G	SNP	ACTR10	ENST00000254286	human	ensembl	74_37	+1	known	missense	c.1243	p.T415A	1.000	NULL	pfam_Actin-related,smart_Actin-related	-	no_errors	ACTR10	HGNC	ENSG00000131966				85	0	0	63	4	5.97015
KIAA0586	0	genome.wustl.edu	37	14	58917322	58917322	+	Silent	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	58917322	58917322	G	T	SNP	KIAA0586	ENST00000556134	human	ensembl	74_37	+1	known	silent	c.942	p.T314	0.000	NULL	NULL	-	no_errors	KIAA0586	HGNC	ENSG00000100578				69	0	0	44	3	6.38298
DACT1	0	genome.wustl.edu	37	14	59112846	59112846	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	59112846	59112846	T	C	SNP	DACT1	ENST00000335867	human	ensembl	74_37	+1	known	missense	c.1505	p.V502A	0.000	NULL	NULL	-	no_errors	DACT1	HGNC	ENSG00000165617				107	0	0	134	13	8.84354
PCNXL4	0	genome.wustl.edu	37	14	60574744	60574744	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	60574744	60574744	C	A	SNP	PCNXL4	ENST00000404681	human	ensembl	74_37	+1	known	missense	c.388	p.L130I	1.000	NULL	pfam_Pecanex	-	no_errors	PCNXL4	HGNC	ENSG00000126773				70	0	0	52	10	16.129
PCNXL4	0	genome.wustl.edu	37	14	60581930	60581930	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	60581930	60581930	A	G	SNP	PCNXL4	ENST00000404681	human	ensembl	74_37	+1	known	missense	c.1108	p.T370A	0.997	NULL	pfam_Pecanex	-	no_errors	PCNXL4	HGNC	ENSG00000126773				184	0	0	111	18	13.9535
PCNXL4	0	genome.wustl.edu	37	14	60585237	60585237	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	60585237	60585237	T	C	SNP	PCNXL4	ENST00000404681	human	ensembl	74_37	+1	known	missense	c.1769	p.L590S	1.000	NULL	pfam_Pecanex	-	no_errors	PCNXL4	HGNC	ENSG00000126773				39	0	0	47	6	11.3208
C14orf39	0	genome.wustl.edu	37	14	60903672	60903672	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	60903672	60903672	T	G	SNP	C14orf39	ENST00000321731	human	ensembl	74_37	-1	known	missense	c.1655	p.D552A	1.000	NULL	NULL	-	no_errors	C14orf39	HGNC	ENSG00000179008				341	0	0	205	61	22.9323
SIX6	0	genome.wustl.edu	37	14	60976477	60976477	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	60976477	60976477	C	T	SNP	SIX6	ENST00000327720	human	ensembl	74_37	+1	known	silent	c.361	p.L121	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	SIX6	HGNC	ENSG00000184302				23	0	0	23	7	23.3333
SIX1	0	genome.wustl.edu	37	14	61115821	61115821	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	61115821	61115821	G	A	SNP	SIX1	ENST00000247182	human	ensembl	74_37	-1	known	silent	c.87	p.R29	0.998	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	SIX1	HGNC	ENSG00000126778				70	0	0	79	8	9.1954
MNAT1	0	genome.wustl.edu	37	14	61201575	61201575	+	RNA	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	61201575	61201575	A	T	SNP	MNAT1	ENST00000553354	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.022	-	-	-	no_errors	MNAT1	HGNC	ENSG00000020426				56	0	0	55	3	5.17241
MNAT1	0	genome.wustl.edu	37	14	61346478	61346478	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	61346478	61346478	T	C	SNP	MNAT1	ENST00000261245	human	ensembl	74_37	+1	known	missense	c.734	p.L245P	0.989	pirsf_MAT1/Tfb3,pfam_Cdk-activating_kinase_MAT1_cen,tigrfam_MAT1/Tfb3	pirsf_MAT1/Tfb3,pfam_Cdk-activating_kinase_MAT1_cen,smart_Znf_RING,pfscan_Ubiquitin-int_motif,pfscan_Znf_RING,tigrfam_MAT1/Tfb3	-	no_errors	MNAT1	HGNC	ENSG00000020426				87	0	0	57	5	8.06452
PPP2R5E	0	genome.wustl.edu	37	14	63842769	63842769	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	63842769	63842769	C	T	SNP	PPP2R5E	ENST00000337537	human	ensembl	74_37	-1	known	silent	c.1362	p.E454	1.000	pirsf_PP2A_B56	pfam_PP2A_B56,superfamily_ARM-type_fold,pirsf_PP2A_B56	-	no_errors	PPP2R5E	HGNC	ENSG00000154001				109	0	0	67	12	15.1899
PPP2R5E	0	genome.wustl.edu	37	14	63881929	63881929	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	63881929	63881929	G	A	SNP	PPP2R5E	ENST00000337537	human	ensembl	74_37	-1	known	nonsense	c.478	p.R160*	1.000	pfam_PP2A_B56,superfamily_ARM-type_fold,pirsf_PP2A_B56	pfam_PP2A_B56,superfamily_ARM-type_fold,pirsf_PP2A_B56	-	no_errors	PPP2R5E	HGNC	ENSG00000154001				132	0	0	91	9	9
SYNE2	0	genome.wustl.edu	37	14	64608200	64608200	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	64608200	64608200	C	T	SNP	SYNE2	ENST00000358025	human	ensembl	74_37	+1	known	missense	c.15118	p.L5040F	0.999	smart_Spectrin/alpha-actinin	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654				93	0	0	73	12	14.1176
AKAP5	0	genome.wustl.edu	37	14	64936006	64936006	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	64936006	64936006	G	A	SNP	AKAP5	ENST00000320636	human	ensembl	74_37	+1	known	silent	c.894	p.E298	0.000	NULL	pfam_Pkinase-A_anch_WSK-motif	-	no_errors	AKAP5	HGNC	ENSG00000179841				111	0	0	91	8	8.08081
FNTB	0	genome.wustl.edu	37	14	65521297	65521297	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	65521297	65521297	C	T	SNP	FNTB	ENST00000447296	human	ensembl	74_37	+1	known	missense	c.1174	p.R392C	0.981	pfam_Prenyltrans,superfamily_Terpenoid_cyclase/PrenylTrfase	pfam_Prenyltrans,pfam_Transcrpt_activator_Churchill,superfamily_Terpenoid_cyclase/PrenylTrfase	-	no_errors	FNTB	HGNC	ENSG00000257365				15	0	0	12	3	20
GPHN	0	genome.wustl.edu	37	14	67589003	67589003	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	67589003	67589003	G	T	SNP	GPHN	ENST00000478722	human	ensembl	74_37	+1	known	missense	c.1657	p.G553W	1.000	pfam_Mopterin-bd_dom,superfamily_Mopterin-bd_dom,smart_Mopterin-bd_dom,tigrfam_Mo_cofactor_synthesis	pfam_Mopterin-bd_dom,pfam_MoeA_linker/N,pfam_MoeA_C_domain_IV,superfamily_MoeA_linker/N,superfamily_Mopterin-bd_dom,superfamily_MoeA_C_domain_IV,smart_Mopterin-bd_dom,tigrfam_Mo_cofactor_synthesis	-	no_errors	GPHN	HGNC	ENSG00000171723				82	0	0	42	15	26.3158
MPP5	0	genome.wustl.edu	37	14	67787971	67787971	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	67787971	67787971	A	G	SNP	MPP5	ENST00000261681	human	ensembl	74_37	+1	known	missense	c.1735	p.T579A	1.000	pfam_GK/Ca_channel_bsu,superfamily_P-loop_NTPase,smart_GK/Ca_channel_bsu,pfscan_Guanylate_kin-like	pfam_GK/Ca_channel_bsu,pfam_L27_N,pfam_SH3_2,pfam_PDZ,pfam_SH3_domain,pfam_L27_C,superfamily_P-loop_NTPase,superfamily_SH3_domain,superfamily_PDZ,smart_L27,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like	-	no_errors	MPP5	HGNC	ENSG00000072415				153	0	0	76	26	25.4902
PLEK2	0	genome.wustl.edu	37	14	67859098	67859098	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	67859098	67859098	A	G	SNP	PLEK2	ENST00000216446	human	ensembl	74_37	-1	known	missense	c.716	p.L239P	0.047	NULL	pfam_Pleckstrin_homology,pfam_DEP_dom,smart_Pleckstrin_homology,smart_DEP_dom,pfscan_DEP_dom,pfscan_Pleckstrin_homology	-	no_errors	PLEK2	HGNC	ENSG00000100558				130	0	0	89	24	21.2389
PLEKHH1	0	genome.wustl.edu	37	14	68044777	68044777	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	68044777	68044777	C	T	SNP	PLEKHH1	ENST00000329153	human	ensembl	74_37	+1	known	missense	c.2612	p.A871V	1.000	smart_MyTH4_dom,pfscan_MyTH4_dom	pfam_Pleckstrin_homology,pfam_MyTH4_dom,pfam_FERM_central,superfamily_FERM_central,smart_Pleckstrin_homology,smart_MyTH4_dom,smart_Band_41_domain,pfscan_FERM_domain,pfscan_MyTH4_dom,pfscan_Pleckstrin_homology	-	no_errors	PLEKHH1	HGNC	ENSG00000054690				78	0	0	70	16	18.6047
GALNT16	0	genome.wustl.edu	37	14	69795187	69795187	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	69795187	69795187	C	T	SNP	GALNT16	ENST00000337827	human	ensembl	74_37	+1	known	missense	c.589	p.R197C	0.941	pfam_Glyco_trans_2	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT16	HGNC	ENSG00000100626				105	0	0	127	11	7.97101
SLC10A1	0	genome.wustl.edu	37	14	70263858	70263858	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	70263858	70263858	G	A	SNP	SLC10A1	ENST00000216540	human	ensembl	74_37	-1	known	silent	c.15	p.N5	0.000	NULL	pfam_BilAc/Na_symport,tigrfam_Bil_ac_transpt	-	no_errors	SLC10A1	HGNC	ENSG00000100652				46	0	0	29	10	25.641
SLC8A3	0	genome.wustl.edu	37	14	70517823	70517823	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	70517823	70517823	G	A	SNP	SLC8A3	ENST00000381269	human	ensembl	74_37	-1	known	missense	c.2033	p.T678I	0.998	tigrfam_Na_Ca_Ex	pfam_NaCa_Exmemb,pfam_Calx_beta,smart_Calx_beta,prints_Na_Ca_Ex,tigrfam_Na_Ca_Ex	-	no_errors	SLC8A3	HGNC	ENSG00000100678				55	0	0	54	9	14.2857
ADAM21P1	0	genome.wustl.edu	37	14	70712780	70712780	+	RNA	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	70712780	70712780	A	G	SNP	ADAM21P1	ENST00000530196	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.905	-	-	-	no_errors	ADAM21P1	HGNC	ENSG00000235812				168	0	0	139	10	6.71141
ADAM21P1	0	genome.wustl.edu	37	14	70713621	70713621	+	RNA	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	70713621	70713621	T	C	SNP	ADAM21P1	ENST00000530196	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	ADAM21P1	HGNC	ENSG00000235812				86	0	0	64	7	9.85915
ADAM21P1	0	genome.wustl.edu	37	14	70713999	70713999	+	RNA	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	70713999	70713999	C	T	SNP	ADAM21P1	ENST00000530196	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.735	-	-	-	no_errors	ADAM21P1	HGNC	ENSG00000235812				106	0	0	86	10	10.4167
ADAM21	0	genome.wustl.edu	37	14	70924308	70924308	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	70924308	70924308	C	A	SNP	ADAM21	ENST00000267499	human	ensembl	74_37	+1	known	missense	c.92	p.A31D	0.000	NULL	pfam_Peptidase_M12B,pfam_ADAM_Cys-rich,pfam_Peptidase_M12B_N,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM21	HGNC	ENSG00000139985				128	0	0	119	11	8.46154
ADAM21	0	genome.wustl.edu	37	14	70925509	70925509	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	70925509	70925509	C	T	SNP	ADAM21	ENST00000267499	human	ensembl	74_37	+1	known	silent	c.1293	p.D431	1.000	pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,pfscan_Blood-coag_inhib_Disintegrin	pfam_Peptidase_M12B,pfam_ADAM_Cys-rich,pfam_Peptidase_M12B_N,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM21	HGNC	ENSG00000139985				78	0	0	54	12	18.1818
ADAM20	0	genome.wustl.edu	37	14	70989594	70989594	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	70989594	70989594	A	G	SNP	ADAM20	ENST00000256389	human	ensembl	74_37	-1	known	silent	c.2031	p.S677	0.000	smart_ADAM_Cys-rich	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM20	HGNC	ENSG00000134007				346	0	0	256	23	8.24373
PCNX	0	genome.wustl.edu	37	14	71429014	71429014	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	71429014	71429014	G	T	SNP	PCNX	ENST00000304743	human	ensembl	74_37	+1	known	missense	c.434	p.R145I	1.000	NULL	pfam_Pecanex	-	no_errors	PCNX	HGNC	ENSG00000100731				236	0	0	163	12	6.85714
PCNX	0	genome.wustl.edu	37	14	71435739	71435739	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	71435739	71435739	A	G	SNP	PCNX	ENST00000304743	human	ensembl	74_37	+1	known	silent	c.516	p.G172	1.000	NULL	pfam_Pecanex	-	no_errors	PCNX	HGNC	ENSG00000100731				237	0	0	165	13	7.30337
PCNX	0	genome.wustl.edu	37	14	71444774	71444774	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	71444774	71444774	T	C	SNP	PCNX	ENST00000304743	human	ensembl	74_37	+1	known	missense	c.1720	p.S574P	0.517	NULL	pfam_Pecanex	-	no_errors	PCNX	HGNC	ENSG00000100731				148	0	0	102	34	25
SIPA1L1	0	genome.wustl.edu	37	14	72055054	72055054	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	72055054	72055054	G	T	SNP	SIPA1L1	ENST00000555818	human	ensembl	74_37	+1	known	missense	c.465	p.M155I	1.000	NULL	pfam_DUF3401,pfam_Rap_GAP_dom,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP_dom	-	no_errors	SIPA1L1	HGNC	ENSG00000197555				75	0	0	67	7	9.45946
SIPA1L1	0	genome.wustl.edu	37	14	72152235	72152235	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	72152235	72152235	T	A	SNP	SIPA1L1	ENST00000555818	human	ensembl	74_37	+1	known	missense	c.3261	p.S1087R	0.934	NULL	pfam_DUF3401,pfam_Rap_GAP_dom,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP_dom	-	no_errors	SIPA1L1	HGNC	ENSG00000197555				43	0	0	40	5	11.1111
RGS6	0	genome.wustl.edu	37	14	72936781	72936781	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	72936781	72936781	G	T	SNP	RGS6	ENST00000553525	human	ensembl	74_37	+1	known	missense	c.526	p.A176S	1.000	NULL	pfam_RGS_dom,pfam_G-protein_gamma-like_dom,pfam_DEP_dom,superfamily_Regulat_G_prot_signal_superfam,superfamily_G-protein_gamma-like_dom,smart_DEP_dom,smart_G-protein_gamma-like_dom,smart_Regulat_G_prot_signal_superfam,pfscan_DEP_dom,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS6	HGNC	ENSG00000182732				109	0	0	62	5	7.46269
DPF3	0	genome.wustl.edu	37	14	73181139	73181139	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	73181139	73181139	A	G	SNP	DPF3	ENST00000366353	human	ensembl	74_37	-1	known	missense	c.761	p.V254A	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	DPF3	HGNC	ENSG00000205683				73	0	0	71	8	10.1266
PAPLN	0	genome.wustl.edu	37	14	73721271	73721271	+	Silent	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	73721271	73721271	G	T	SNP	PAPLN	ENST00000427855	human	ensembl	74_37	+1	known	silent	c.1353	p.R451	0.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Ig_I-set,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_Prot_inh_Kunz-m,pfam_PLAC,superfamily_Prot_inh_Kunz-m,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_Prot_inh_Kunz-m,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Prot_inh_Kunz-m,pfscan_Ig-like_dom,prints_Peptidase_M12B_ADAM-TS,prints_Prot_inh_Kunz-m	-	no_errors	PAPLN	HGNC	ENSG00000100767				129	1	0.769231	138	9	6.12245
NUMB	0	genome.wustl.edu	37	14	73750839	73750839	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	73750839	73750839	T	C	SNP	NUMB	ENST00000355058	human	ensembl	74_37	-1	known	missense	c.899	p.E300G	1.000	pfam_Numb_domain,pirsf_Numb/numb-like	pfam_Numb_domain,pfam_PTB/PI_dom,pfam_PTB,smart_PTB/PI_dom,pirsf_Numb/numb-like,pfscan_PTB/PI_dom	-	no_errors	NUMB	HGNC	ENSG00000133961				117	0	0	116	9	7.2
HEATR4	0	genome.wustl.edu	37	14	73945354	73945354	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	73945354	73945354	G	T	SNP	HEATR4	ENST00000334988	human	ensembl	74_37	-1	known	missense	c.3038	p.P1013H	0.000	NULL	pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	HEATR4	HGNC	ENSG00000187105				86	0	0	81	12	12.9032
ACOT2	0	genome.wustl.edu	37	14	74040291	74040291	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	74040291	74040291	C	T	SNP	ACOT2	ENST00000238651	human	ensembl	74_37	+1	known	silent	c.843	p.P281	0.014	pfam_BAAT_C,pirsf_Acyl-CoA_thioEstase_long-chain	pfam_BAAT_C,pfam_Thio_Ohase/aa_AcTrfase,pirsf_Acyl-CoA_thioEstase_long-chain	-	no_errors	ACOT2	HGNC	ENSG00000119673				115	0	0	94	23	19.6581
DNAL1	0	genome.wustl.edu	37	14	74128725	74128725	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	74128725	74128725	T	A	SNP	DNAL1	ENST00000553645	human	ensembl	74_37	+1	known	missense	c.188	p.I63N	1.000	NULL	NULL	-	no_errors	DNAL1	HGNC	ENSG00000119661				14	0	0	8	3	27.2727
ELMSAN1	0	genome.wustl.edu	37	14	74205679	74205679	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	74205679	74205679	G	A	SNP	ELMSAN1	ENST00000286523	human	ensembl	74_37	-1	known	missense	c.1033	p.R345C	0.997	NULL	pfam_ELM2_dom,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_ELM2_dom	-	no_errors	ELMSAN1	HGNC	ENSG00000156030				33	0	0	44	10	18.5185
ELMSAN1	0	genome.wustl.edu	37	14	74206622	74206622	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	74206622	74206622	A	G	SNP	ELMSAN1	ENST00000286523	human	ensembl	74_37	-1	known	silent	c.90	p.P30	0.051	NULL	pfam_ELM2_dom,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_ELM2_dom	-	no_errors	ELMSAN1	HGNC	ENSG00000156030				66	0	0	64	9	12.3288
ELMSAN1	0	genome.wustl.edu	37	14	74206623	74206623	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	74206623	74206623	G	A	SNP	ELMSAN1	ENST00000286523	human	ensembl	74_37	-1	known	missense	c.89	p.P30L	0.160	NULL	pfam_ELM2_dom,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_ELM2_dom	-	no_errors	ELMSAN1	HGNC	ENSG00000156030				66	0	0	61	9	12.8571
ALDH6A1	0	genome.wustl.edu	37	14	74534085	74534085	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	74534085	74534085	G	A	SNP	ALDH6A1	ENST00000553458	human	ensembl	74_37	-1	known	missense	c.1040	p.A347V	1.000	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH,tigrfam_MeMal-semiAld_DH	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH,tigrfam_MeMal-semiAld_DH	-	no_errors	ALDH6A1	HGNC	ENSG00000119711				111	0	0	93	12	11.4286
ABCD4	0	genome.wustl.edu	37	14	74758990	74758990	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	74758990	74758990	G	A	SNP	ABCD4	ENST00000356924	human	ensembl	74_37	-1	known	missense	c.1118	p.T373I	0.928	superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom	pfam_ABC_Peroxi_TM,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCD4	HGNC	ENSG00000119688				65	0	0	69	8	10.3896
VRTN	0	genome.wustl.edu	37	14	74824569	74824569	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	74824569	74824569	G	A	SNP	VRTN	ENST00000256362	human	ensembl	74_37	+1	known	silent	c.1083	p.P361	0.000	NULL	pfam_Transposase_8	-	no_errors	VRTN	HGNC	ENSG00000133980				40	0	0	36	10	21.7391
SYNDIG1L	0	genome.wustl.edu	37	14	74874616	74874616	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	74874616	74874616	G	A	SNP	SYNDIG1L	ENST00000331628	human	ensembl	74_37	-1	known	missense	c.494	p.T165I	0.991	pfam_CD225/Dispanin_fam	pfam_CD225/Dispanin_fam	-	no_errors	SYNDIG1L	HGNC	ENSG00000183379				42	0	0	42	4	8.69565
LTBP2	0	genome.wustl.edu	37	14	75019682	75019682	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	75019682	75019682	A	G	SNP	LTBP2	ENST00000261978	human	ensembl	74_37	-1	known	missense	c.1105	p.C369R	1.000	NULL	pfam_EGF-like_Ca-bd_dom,pfam_TB_dom,pfam_EG-like_dom,superfamily_TB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	LTBP2	HGNC	ENSG00000119681				23	0	0	28	3	9.67742
LTBP2	0	genome.wustl.edu	37	14	75078162	75078162	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	75078162	75078162	C	T	SNP	LTBP2	ENST00000261978	human	ensembl	74_37	-1	known	silent	c.486	p.R162	0.998	NULL	pfam_EGF-like_Ca-bd_dom,pfam_TB_dom,pfam_EG-like_dom,superfamily_TB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	LTBP2	HGNC	ENSG00000119681				62	0	0	60	8	11.7647
YLPM1	0	genome.wustl.edu	37	14	75264547	75264547	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	75264547	75264547	G	A	SNP	YLPM1	ENST00000325680	human	ensembl	74_37	+1	known	silent	c.2547	p.Q849	1.000	NULL	superfamily_P-loop_NTPase	-	no_errors	YLPM1	HGNC	ENSG00000119596				120	0	0	88	6	6.38298
MLH3	0	genome.wustl.edu	37	14	75513923	75513923	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	75513923	75513923	A	G	SNP	MLH3	ENST00000355774	human	ensembl	74_37	-1	known	silent	c.2436	p.S812	0.018	NULL	pfam_MutL_C,pfam_DNA_mismatch_repair_C,pfam_HATPase_ATP-bd,superfamily_HATPase_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_WW_dom,smart_MutL_C	-	no_errors	MLH3	HGNC	ENSG00000119684				121	0	0	82	5	5.74713
MLH3	0	genome.wustl.edu	37	14	75515816	75515816	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	75515816	75515816	C	T	SNP	MLH3	ENST00000355774	human	ensembl	74_37	-1	known	missense	c.543	p.M181I	1.000	superfamily_HATPase_ATP-bd	pfam_MutL_C,pfam_DNA_mismatch_repair_C,pfam_HATPase_ATP-bd,superfamily_HATPase_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_WW_dom,smart_MutL_C	-	no_errors	MLH3	HGNC	ENSG00000119684				72	0	0	55	4	6.77966
FLVCR2	0	genome.wustl.edu	37	14	76107378	76107378	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	76107378	76107378	C	T	SNP	FLVCR2	ENST00000238667	human	ensembl	74_37	+1	known	missense	c.1316	p.S439F	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,superfamily_Trimer_LpxA-like,pfscan_MFS_dom	-	no_errors	FLVCR2	HGNC	ENSG00000119686				115	0	0	104	25	19.3798
TGFB3	0	genome.wustl.edu	37	14	76429788	76429788	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	76429788	76429788	C	T	SNP	TGFB3	ENST00000238682	human	ensembl	74_37	-1	known	missense	c.797	p.R266H	1.000	pirsf_TGF-beta,prints_Transform_grow_fac_b3	pirsf_TGF-beta,pfam_TGF-b_N,pfam_TGF-b_C,smart_TGF-b_C,prints_Transform_grow_fac_b3,prints_TGF-beta	-	no_errors	TGFB3	HGNC	ENSG00000119699				124	0	0	123	12	8.88889
TGFB3	0	genome.wustl.edu	37	14	76437504	76437504	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	76437504	76437504	A	T	SNP	TGFB3	ENST00000238682	human	ensembl	74_37	-1	known	missense	c.611	p.V204D	1.000	pirsf_TGF-beta,pfam_TGF-b_N,prints_TGF-beta	pirsf_TGF-beta,pfam_TGF-b_N,pfam_TGF-b_C,smart_TGF-b_C,prints_Transform_grow_fac_b3,prints_TGF-beta	-	no_errors	TGFB3	HGNC	ENSG00000119699				104	0	0	112	12	9.67742
IRF2BPL	0	genome.wustl.edu	37	14	77492964	77492964	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	77492964	77492964	C	T	SNP	IRF2BPL	ENST00000238647	human	ensembl	74_37	-1	known	missense	c.1172	p.R391H	1.000	pfam_Interferon_reg_fac2-bd1_2_Znf	pfam_Interferon_reg_fac2-bd1_2_Znf	-	no_errors	IRF2BPL	HGNC	ENSG00000119669				28	0	0	36	4	10
TMEM63C	0	genome.wustl.edu	37	14	77715740	77715740	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	77715740	77715740	G	T	SNP	TMEM63C	ENST00000298351	human	ensembl	74_37	+1	known	missense	c.1977	p.Q659H	1.000	pfam_DUF221	pfam_DUF221	-	no_errors	TMEM63C	HGNC	ENSG00000165548				72	0	0	72	8	10
GSTZ1	0	genome.wustl.edu	37	14	77794333	77794333	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	77794333	77794333	G	A	SNP	GSTZ1	ENST00000216465	human	ensembl	74_37	+1	known	missense	c.295	p.V99M	0.996	superfamily_Glutathione-S-Trfase_C-like,tigrfam_Mal_ac_isom	pfam_Glutathione_S-Trfase_N,pfam_GST_C,superfamily_Glutathione-S-Trfase_C-like,superfamily_Thioredoxin-like_fold,tigrfam_Mal_ac_isom	-	no_errors	GSTZ1	HGNC	ENSG00000100577				36	0	0	31	3	8.82353
ISM2	0	genome.wustl.edu	37	14	77942198	77942198	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	77942198	77942198	T	C	SNP	ISM2	ENST00000342219	human	ensembl	74_37	-1	known	missense	c.1456	p.T486A	1.000	pfam_AMOP,smart_AMOP,pfscan_AMOP	pfam_AMOP,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_AMOP,pfscan_AMOP,pfscan_Thrombospondin_1_rpt	-	no_errors	ISM2	HGNC	ENSG00000100593				40	0	0	31	5	13.8889
SNW1	0	genome.wustl.edu	37	14	78198882	78198882	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	78198882	78198882	G	A	SNP	SNW1	ENST00000261531	human	ensembl	74_37	-1	known	silent	c.837	p.H279	1.000	pfam_SKI-int_prot_SKIP_SNW-dom,superfamily_Signal_recog_particl_SRP54_hlx	pfam_SKI-int_prot_SKIP_SNW-dom,superfamily_Signal_recog_particl_SRP54_hlx	-	no_errors	SNW1	HGNC	ENSG00000100603				83	0	0	49	3	5.76923
ADCK1	0	genome.wustl.edu	37	14	78285417	78285417	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	78285417	78285417	T	C	SNP	ADCK1	ENST00000238561	human	ensembl	74_37	+1	known	silent	c.96	p.N32	1.000	NULL	pfam_UbiB_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom	-	no_errors	ADCK1	HGNC	ENSG00000063761				140	0	0	100	10	9.09091
DIO2	0	genome.wustl.edu	37	14	80677662	80677662	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	80677662	80677662	G	A	SNP	DIO2	ENST00000422005	human	ensembl	74_37	-1	known	missense	c.154	p.R52W	1.000	pfam_Iodothyronine_deiodinase	pfam_Iodothyronine_deiodinase	-	no_errors	DIO2	HGNC	ENSG00000211448				37	0	0	34	4	10.5263
TSHR	0	genome.wustl.edu	37	14	81574744	81574744	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	81574744	81574744	A	G	SNP	TSHR	ENST00000298171	human	ensembl	74_37	+1	known	missense	c.640	p.T214A	0.996	prints_TSH_rcpt,prints_FSH_rcpt,prints_LSH_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_TSH_rcpt,prints_Gphrmn_rcpt_fam,prints_GPCR_Rhodpsn,prints_FSH_rcpt,prints_LSH_rcpt	-	no_errors	TSHR	HGNC	ENSG00000165409				164	0	0	84	21	20
SEL1L	0	genome.wustl.edu	37	14	81993276	81993276	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	81993276	81993276	G	A	SNP	SEL1L	ENST00000336735	human	ensembl	74_37	-1	known	silent	c.141	p.D47	1.000	NULL	pfam_Sel1-like,pfam_FN_type2_col-bd,superfamily_Kringle-like,smart_FN_type2_col-bd,smart_Sel1-like,pfscan_FN_type2_col-bd	-	no_errors	SEL1L	HGNC	ENSG00000071537				102	0	0	81	6	6.89655
FLRT2	0	genome.wustl.edu	37	14	86088684	86088684	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	86088684	86088684	C	T	SNP	FLRT2	ENST00000330753	human	ensembl	74_37	+1	known	missense	c.826	p.R276C	0.990	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_Fibronectin_type3,pfam_LRR-contain_N,superfamily_Fibronectin_type3,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_Fibronectin_type3	-	no_errors	FLRT2	HGNC	ENSG00000185070				253	0	0	164	48	22.6415
FLRT2	0	genome.wustl.edu	37	14	86089822	86089822	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	86089822	86089822	T	C	SNP	FLRT2	ENST00000330753	human	ensembl	74_37	+1	known	missense	c.1964	p.L655P	1.000	NULL	pfam_Leu-rich_rpt,pfam_Fibronectin_type3,pfam_LRR-contain_N,superfamily_Fibronectin_type3,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_Fibronectin_type3	-	no_errors	FLRT2	HGNC	ENSG00000185070				203	1	0.490196	171	20	10.4712
EML5	0	genome.wustl.edu	37	14	89123818	89123818	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	89123818	89123818	A	G	SNP	EML5	ENST00000554922	human	ensembl	74_37	-1	known	silent	c.3906	p.N1302	1.000	NULL	pfam_WD40_repeat,pfam_HELP,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EML5	HGNC	ENSG00000165521				45	0	0	34	3	8.10811
EML5	0	genome.wustl.edu	37	14	89206880	89206880	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	89206880	89206880	G	A	SNP	EML5	ENST00000554922	human	ensembl	74_37	-1	known	nonsense	c.562	p.R188*	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_HELP,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EML5	HGNC	ENSG00000165521				189	0	0	141	19	11.875
TTC8	0	genome.wustl.edu	37	14	89338740	89338740	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	89338740	89338740	G	A	SNP	TTC8	ENST00000338104	human	ensembl	74_37	+1	known	missense	c.1339	p.A447T	1.000	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC8	HGNC	ENSG00000165533				86	0	0	66	21	24.1379
TDP1	0	genome.wustl.edu	37	14	90442125	90442125	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	90442125	90442125	G	A	SNP	TDP1	ENST00000335725	human	ensembl	74_37	+1	known	missense	c.757	p.A253T	1.000	pfam_Tyr-DNA_phospho	pfam_Tyr-DNA_phospho	-	no_errors	TDP1	HGNC	ENSG00000042088				151	0	0	133	11	7.63889
PSMC1	0	genome.wustl.edu	37	14	90734649	90734649	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	90734649	90734649	A	G	SNP	PSMC1	ENST00000261303	human	ensembl	74_37	+1	known	missense	c.773	p.K258R	1.000	pfam_ATPase_AAA_core,pfam_ATPase_AAA-2,pfam_DUF815,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_P-loop_NTPase,smart_AAA+_ATPase,tigrfam_26S_Psome_P45	pfam_ATPase_AAA_core,pfam_ATPase_AAA-2,pfam_DUF815,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_P-loop_NTPase,smart_AAA+_ATPase,tigrfam_26S_Psome_P45	-	no_errors	PSMC1	HGNC	ENSG00000100764				76	0	0	42	5	10.6383
NRDE2	0	genome.wustl.edu	37	14	90754929	90754929	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	90754929	90754929	C	T	SNP	NRDE2	ENST00000354366	human	ensembl	74_37	-1	known	silent	c.2790	p.V930	0.000	NULL	pfam_NRDE-2	-	no_errors	NRDE2	HGNC	ENSG00000119720				72	0	0	69	8	10.3896
TTC7B	0	genome.wustl.edu	37	14	91211165	91211165	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	91211165	91211165	C	T	SNP	TTC7B	ENST00000357056	human	ensembl	74_37	-1	known	missense	c.547	p.A183T	0.997	NULL	pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC7B	HGNC	ENSG00000165914				129	0	0	106	19	15.2
TTC7B	0	genome.wustl.edu	37	14	91247091	91247091	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	91247091	91247091	C	T	SNP	TTC7B	ENST00000357056	human	ensembl	74_37	-1	known	missense	c.436	p.A146T	0.999	NULL	pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC7B	HGNC	ENSG00000165914				111	0	0	79	18	18.5567
GPR68	0	genome.wustl.edu	37	14	91701388	91701388	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	91701388	91701388	T	A	SNP	GPR68	ENST00000238699	human	ensembl	74_37	-1	known	missense	c.37	p.N13Y	1.000	prints_OGR1_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_OGR1_rcpt,prints_GPCR_Rhodpsn,prints_Psych_rcpt	-	no_errors	GPR68	HGNC	ENSG00000119714				55	0	0	58	8	12.1212
CCDC88C	0	genome.wustl.edu	37	14	91804375	91804375	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	91804375	91804375	C	T	SNP	CCDC88C	ENST00000389857	human	ensembl	74_37	-1	known	missense	c.1024	p.V342M	0.997	pfam_Hook-related_fam	pfam_Hook-related_fam,superfamily_Prefoldin,superfamily_Fum_Rdtase/Succ_DH_flav-like_C	-	no_errors	CCDC88C	HGNC	ENSG00000015133				52	0	0	39	8	17.0213
FBLN5	0	genome.wustl.edu	37	14	92353637	92353637	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	92353637	92353637	G	A	SNP	FBLN5	ENST00000342058	human	ensembl	74_37	-1	known	silent	c.639	p.T213	0.001	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd_dom,superfamily_TIL_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	-	no_errors	FBLN5	HGNC	ENSG00000140092				113	0	0	104	21	16.8
NDUFB1	0	genome.wustl.edu	37	14	92583937	92583937	+	Silent	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	92583937	92583937	A	C	SNP	NDUFB1	ENST00000329559	human	ensembl	74_37	-1	known	silent	c.186	p.V62	0.031	pfam_NADH_UbQ_OxRdtase_MNLL_su	pfam_NADH_UbQ_OxRdtase_MNLL_su	-	no_errors	NDUFB1	HGNC	ENSG00000183648				74	0	0	46	14	23.3333
RIN3	0	genome.wustl.edu	37	14	93043784	93043784	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	93043784	93043784	C	T	SNP	RIN3	ENST00000216487	human	ensembl	74_37	+1	known	missense	c.329	p.A110V	0.022	smart_SH2,pfscan_SH2	pfam_VPS9,smart_SH2,smart_VPS9_subgr,pfscan_Ras-assoc,pfscan_SH2,pfscan_VPS9	-	no_errors	RIN3	HGNC	ENSG00000100599				164	1	0.606061	114	33	22.449
RIN3	0	genome.wustl.edu	37	14	93154423	93154423	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	93154423	93154423	C	T	SNP	RIN3	ENST00000216487	human	ensembl	74_37	+1	known	silent	c.2784	p.D928	0.998	pfscan_Ras-assoc	pfam_VPS9,smart_SH2,smart_VPS9_subgr,pfscan_Ras-assoc,pfscan_SH2,pfscan_VPS9	-	no_errors	RIN3	HGNC	ENSG00000100599				20	0	0	15	5	25
RIN3	0	genome.wustl.edu	37	14	93154499	93154499	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	93154499	93154499	C	T	SNP	RIN3	ENST00000216487	human	ensembl	74_37	+1	known	missense	c.2860	p.R954C	0.972	pfscan_Ras-assoc	pfam_VPS9,smart_SH2,smart_VPS9_subgr,pfscan_Ras-assoc,pfscan_SH2,pfscan_VPS9	-	no_errors	RIN3	HGNC	ENSG00000100599				32	0	0	24	5	17.2414
LGMN	0	genome.wustl.edu	37	14	93176081	93176081	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	93176081	93176081	A	G	SNP	LGMN	ENST00000334869	human	ensembl	74_37	-1	known	missense	c.956	p.L319P	1.000	NULL	pfam_Peptidase_C13,prints_Peptidase_C13	-	no_errors	LGMN	HGNC	ENSG00000100600				168	0	0	170	14	7.6087
LGMN	0	genome.wustl.edu	37	14	93180773	93180773	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	93180773	93180773	A	C	SNP	LGMN	ENST00000334869	human	ensembl	74_37	-1	known	missense	c.428	p.I143S	0.979	pfam_Peptidase_C13,prints_Peptidase_C13	pfam_Peptidase_C13,prints_Peptidase_C13	-	no_errors	LGMN	HGNC	ENSG00000100600				97	0	0	72	5	6.49351
BTBD7	0	genome.wustl.edu	37	14	93760752	93760752	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	93760752	93760752	C	A	SNP	BTBD7	ENST00000334746	human	ensembl	74_37	-1	known	missense	c.614	p.G205V	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	BTBD7	HGNC	ENSG00000011114				68	0	0	56	4	6.66667
BTBD7	0	genome.wustl.edu	37	14	93761249	93761249	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	93761249	93761249	G	A	SNP	BTBD7	ENST00000334746	human	ensembl	74_37	-1	known	silent	c.117	p.C39	1.000	NULL	pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	BTBD7	HGNC	ENSG00000011114				146	1	0.680272	76	30	28.3019
UNC79	0	genome.wustl.edu	37	14	94069685	94069685	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	94069685	94069685	T	C	SNP	UNC79	ENST00000553484	human	ensembl	74_37	+1	known	silent	c.3675	p.R1225	0.967	superfamily_ARM-type_fold	superfamily_P-loop_NTPase,superfamily_ARM-type_fold	-	no_errors	UNC79	HGNC	ENSG00000133958				85	0	0	73	8	9.87654
ASB2	0	genome.wustl.edu	37	14	94420793	94420793	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	94420793	94420793	G	A	SNP	ASB2	ENST00000315988	human	ensembl	74_37	-1	known	silent	c.204	p.G68	0.052	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C,prints_Ankyrin_rpt	-	no_errors	ASB2	HGNC	ENSG00000100628				103	0	0	70	32	31.3725
IFI27L1	0	genome.wustl.edu	37	14	94568278	94568278	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	94568278	94568278	C	T	SNP	IFI27L1	ENST00000553664	human	ensembl	74_37	+1	putative	missense	c.247	p.R83W	0.064	NULL	NULL	-	no_errors	IFI27L1	HGNC	ENSG00000165948				71	0	0	76	8	9.52381
SERPINA6	0	genome.wustl.edu	37	14	94780965	94780965	+	Silent	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	94780965	94780965	G	T	SNP	SERPINA6	ENST00000341584	human	ensembl	74_37	-1	known	silent	c.21	p.T7	0.737	superfamily_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINA6	HGNC	ENSG00000170099				144	0	0	127	15	10.5634
DICER1	0	genome.wustl.edu	37	14	95562437	95562437	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	95562437	95562437	C	T	SNP	DICER1	ENST00000343455	human	ensembl	74_37	-1	known	missense	c.4820	p.R1607Q	0.087	NULL	pfam_RNase_III_dom,pfam_PAZ_dom,pfam_Dicer_dimerisation_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,superfamily_RNase_III_dom,superfamily_P-loop_NTPase,superfamily_PAZ_dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_PAZ_dom,smart_RNase_III_dom,smart_dsRNA-bd_dom,pfscan_PAZ_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_dsRNA-bd_dom,pfscan_RNase_III_dom	-	no_errors	DICER1	HGNC	ENSG00000100697				368	0	0	261	32	10.9215
CLMN	0	genome.wustl.edu	37	14	95690184	95690184	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	95690184	95690184	T	C	SNP	CLMN	ENST00000298912	human	ensembl	74_37	-1	known	silent	c.153	p.P51	0.944	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	CLMN	HGNC	ENSG00000165959				51	0	0	43	4	8.51064
SYNE3	0	genome.wustl.edu	37	14	95923565	95923565	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	95923565	95923565	G	A	SNP	SYNE3	ENST00000334258	human	ensembl	74_37	-1	known	silent	c.738	p.C246	0.436	smart_Spectrin/alpha-actinin	pfam_KASH,pfam_Spectrin_repeat,superfamily_Retrov_capsid_C,smart_Spectrin/alpha-actinin,pfscan_KASH	-	no_errors	SYNE3	HGNC	ENSG00000176438				110	0	0	123	13	9.55882
TCL1B	0	genome.wustl.edu	37	14	96157234	96157234	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	96157234	96157234	C	T	SNP	TCL1B	ENST00000340722	human	ensembl	74_37	+1	known	silent	c.324	p.D108	0.002	pfam_TCL1_MTCP1,superfamily_TCL1_MTCP1	pfam_TCL1_MTCP1,superfamily_TCL1_MTCP1	-	no_errors	TCL1B	HGNC	ENSG00000213231				47	0	0	41	5	10.8696
BDKRB2	0	genome.wustl.edu	37	14	96707571	96707571	+	Silent	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	96707571	96707571	C	A	SNP	BDKRB2	ENST00000306005	human	ensembl	74_37	+1	known	silent	c.906	p.S302	0.001	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Brdyknn_2_rcpt,prints_ATII_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Brdyknn_2_rcpt,prints_GPCR_Rhodpsn,prints_Brdyknn_rcpt,prints_ATII_rcpt	-	no_errors	BDKRB2	HGNC	ENSG00000168398				26	0	0	29	6	17.1429
ATG2B	0	genome.wustl.edu	37	14	96761477	96761477	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	96761477	96761477	G	A	SNP	ATG2B	ENST00000359933	human	ensembl	74_37	-1	known	missense	c.5246	p.T1749I	1.000	NULL	pfam_Autophagy-rel_C	-	no_errors	ATG2B	HGNC	ENSG00000066739				101	0	0	61	22	26.506
BCL11B	0	genome.wustl.edu	37	14	99697807	99697807	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	99697807	99697807	C	T	SNP	BCL11B	ENST00000357195	human	ensembl	74_37	-1	known	missense	c.515	p.R172H	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	BCL11B	HGNC	ENSG00000127152				22	0	0	12	4	25
CERS3	0	genome.wustl.edu	37	15	101016374	101016374	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	101016374	101016374	G	A	SNP	CERS3	ENST00000284382	human	ensembl	74_37	-1	known	missense	c.526	p.P176S	1.000	pirsf_Longevity_assurance_LAG1_LAC1,pfam_TLC-dom,smart_TLC-dom,pfscan_TLC-dom	pirsf_Longevity_assurance_LAG1_LAC1,pfam_TLC-dom,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,smart_TLC-dom,pfscan_TLC-dom,pfscan_Homeobox_dom	-	no_errors	CERS3	HGNC	ENSG00000154227				114	0	0	76	4	5
LINS	0	genome.wustl.edu	37	15	101109963	101109963	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	101109963	101109963	T	A	SNP	LINS	ENST00000314742	human	ensembl	74_37	-1	known	missense	c.1754	p.D585V	0.000	NULL	NULL	-	no_errors	LINS	HGNC	ENSG00000140471				49	0	0	57	5	8.06452
ALDH1A3	0	genome.wustl.edu	37	15	101434180	101434180	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	101434180	101434180	C	A	SNP	ALDH1A3	ENST00000329841	human	ensembl	74_37	+1	known	missense	c.559	p.L187M	1.000	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	-	no_errors	ALDH1A3	HGNC	ENSG00000184254				111	0	0	104	11	9.56522
ALDH1A3	0	genome.wustl.edu	37	15	101438337	101438337	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	101438337	101438337	T	A	SNP	ALDH1A3	ENST00000329841	human	ensembl	74_37	+1	known	missense	c.830	p.V277E	1.000	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	-	no_errors	ALDH1A3	HGNC	ENSG00000184254				50	0	0	64	5	7.24638
CHSY1	0	genome.wustl.edu	37	15	101719007	101719007	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	101719007	101719007	A	G	SNP	CHSY1	ENST00000254190	human	ensembl	74_37	-1	known	missense	c.995	p.I332T	0.812	pfam_Chond_GalNAc	pfam_Chond_GalNAc,pfam_Fringe-like	-	no_errors	CHSY1	HGNC	ENSG00000131873				73	0	0	80	7	8.04598
TARSL2	0	genome.wustl.edu	37	15	102211755	102211755	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	102211755	102211755	T	C	SNP	TARSL2	ENST00000335968	human	ensembl	74_37	-1	known	missense	c.1901	p.Y634C	1.000	pfscan_aa-tRNA-synth_II,prints_Thr-tRNA-ligase_IIa,tigrfam_Thr-tRNA-ligase_IIa	pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Anticodon-bd,pfam_TGS,pfam_tRNA_SAD,superfamily_Thr/Ala-tRNA-synth_IIc_edit,superfamily_Anticodon-bd,superfamily_TGS-like,smart_tRNA_SAD,pfscan_aa-tRNA-synth_II,prints_Thr-tRNA-ligase_IIa,tigrfam_Thr-tRNA-ligase_IIa	-	no_errors	TARSL2	HGNC	ENSG00000185418				212	0	0	147	8	5.16129
OR4F15	0	genome.wustl.edu	37	15	102358739	102358739	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	102358739	102358739	C	T	SNP	OR4F15	ENST00000332238	human	ensembl	74_37	+1	known	missense	c.350	p.A117V	0.997	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4F15	HGNC	ENSG00000182854				189	0	0	163	21	11.413
CYFIP1	0	genome.wustl.edu	37	15	22956546	22956546	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	22956546	22956546	T	A	SNP	CYFIP1	ENST00000313077	human	ensembl	74_37	+1	known	missense	c.1783	p.F595I	1.000	pfam_Cytoplasmic_FMR1-int,pirsf_Cytoplasmic_FMR1-int_sub	pfam_Cytoplasmic_FMR1-int,pirsf_Cytoplasmic_FMR1-int_sub,prints_Cytoplasmic_FMR1-int	-	no_errors	CYFIP1	HGNC	ENSG00000068793				87	0	0	74	6	7.5
CYFIP1	0	genome.wustl.edu	37	15	23000163	23000163	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	23000163	23000163	C	T	SNP	CYFIP1	ENST00000313077	human	ensembl	74_37	+1	known	missense	c.3517	p.R1173C	1.000	pfam_Cytoplasmic_FMR1-int,pirsf_Cytoplasmic_FMR1-int_sub	pfam_Cytoplasmic_FMR1-int,pirsf_Cytoplasmic_FMR1-int_sub,prints_Cytoplasmic_FMR1-int	-	no_errors	CYFIP1	HGNC	ENSG00000068793				79	0	0	51	13	20.3125
NIPA2	0	genome.wustl.edu	37	15	23006481	23006481	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	23006481	23006481	G	T	SNP	NIPA2	ENST00000337451	human	ensembl	74_37	-1	known	missense	c.823	p.P275T	1.000	pfam_Mg_trans_NIPA	pfam_Mg_trans_NIPA,pfam_DMT	-	no_errors	NIPA2	HGNC	ENSG00000140157				137	0	0	114	11	8.8
NIPA2	0	genome.wustl.edu	37	15	23006661	23006661	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	23006661	23006661	G	A	SNP	NIPA2	ENST00000337451	human	ensembl	74_37	-1	known	missense	c.643	p.H215Y	0.233	pfam_Mg_trans_NIPA	pfam_Mg_trans_NIPA,pfam_DMT	-	no_errors	NIPA2	HGNC	ENSG00000140157				133	0	0	110	11	9.09091
GOLGA8I	0	genome.wustl.edu	37	15	23261078	23261078	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	23261078	23261078	G	A	SNP	GOLGA8I	ENST00000450802	human	ensembl	74_37	+1	known	silent	c.753	p.R251	0.080	NULL	NULL	-	no_errors	GOLGA8I	HGNC	ENSG00000153666				133	0	0	89	21	19.0909
NDN	0	genome.wustl.edu	37	15	23931990	23931990	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	23931990	23931990	C	T	SNP	NDN	ENST00000331837	human	ensembl	74_37	-1	known	silent	c.375	p.V125	0.996	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfscan_MAGE	-	no_errors	NDN	HGNC	ENSG00000182636				123	0	0	90	7	7.21649
SNRPN	0	genome.wustl.edu	37	15	25223574	25223574	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	25223574	25223574	C	T	SNP	SNRPN	ENST00000444203	human	ensembl	74_37	+1	known	missense	c.718	p.R240C	0.995	pirsf_snRNP-assoc_SmB/SmN	pfam_Ribonucl_LSM,superfamily_LSM_dom,smart_Ribonucl_LSM_euk/arc,pirsf_snRNP-assoc_SmB/SmN	-	no_errors	SNRPN	HGNC	ENSG00000128739				211	0	0	199	15	7.00935
SNORD116-16	0	genome.wustl.edu	37	15	25327959	25327959	+	RNA	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	25327959	25327959	C	T	SNP	SNORD116-16	ENST00000384533	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SNORD116-16	HGNC	ENSG00000207263				169	0	0	124	22	15.0685
SNORD115-41	0	genome.wustl.edu	37	15	25490636	25490636	+	RNA	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	25490636	25490636	G	T	SNP	SNORD115-41	ENST00000363608	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.022	-	-	-	no_errors	SNORD115-41	HGNC	ENSG00000200478				232	0	0	207	21	9.21053
SNORD115-48	0	genome.wustl.edu	37	15	25514961	25514961	+	RNA	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	25514961	25514961	A	G	SNP	SNORD115-48	ENST00000364764	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SNORD115-48	HGNC	ENSG00000201634				62	0	0	39	4	9.30233
UBE3A	0	genome.wustl.edu	37	15	25616489	25616489	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	25616489	25616489	G	A	SNP	UBE3A	ENST00000397954	human	ensembl	74_37	-1	known	missense	c.841	p.P281S	1.000	pirsf_Ubiquitin-protein_ligase_E6-AP	pfam_HECT,superfamily_HECT,smart_HECT,pirsf_Ubiquitin-protein_ligase_E6-AP,pfscan_HECT	-	no_errors	UBE3A	HGNC	ENSG00000114062				91	0	0	79	8	9.1954
UBE3A	0	genome.wustl.edu	37	15	25616842	25616842	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	25616842	25616842	A	G	SNP	UBE3A	ENST00000397954	human	ensembl	74_37	-1	known	missense	c.488	p.L163S	1.000	pirsf_Ubiquitin-protein_ligase_E6-AP	pfam_HECT,superfamily_HECT,smart_HECT,pirsf_Ubiquitin-protein_ligase_E6-AP,pfscan_HECT	-	no_errors	UBE3A	HGNC	ENSG00000114062				128	0	0	90	10	10
ATP10A	0	genome.wustl.edu	37	15	25926195	25926195	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	25926195	25926195	A	G	SNP	ATP10A	ENST00000356865	human	ensembl	74_37	-1	known	silent	c.3519	p.F1173	0.999	tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP10A	HGNC	ENSG00000206190				46	0	0	42	5	10.6383
ATP10A	0	genome.wustl.edu	37	15	25966960	25966960	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	25966960	25966960	T	C	SNP	ATP10A	ENST00000356865	human	ensembl	74_37	-1	known	missense	c.1207	p.T403A	1.000	tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP10A	HGNC	ENSG00000206190				168	0	0	126	12	8.69565
ATP10A	0	genome.wustl.edu	37	15	25981215	25981215	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	25981215	25981215	A	C	SNP	ATP10A	ENST00000356865	human	ensembl	74_37	-1	known	missense	c.728	p.F243C	1.000	pfam_ATPase_P-typ_transduc_dom_A,tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP10A	HGNC	ENSG00000206190				49	0	0	35	5	12.5
GABRA5	0	genome.wustl.edu	37	15	27182338	27182338	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	27182338	27182338	A	G	SNP	GABRA5	ENST00000335625	human	ensembl	74_37	+1	known	missense	c.587	p.Y196C	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_GABAA_rcpt,prints_GABBAa5_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRA5	HGNC	ENSG00000186297				106	0	0	93	5	5.10204
HERC2	0	genome.wustl.edu	37	15	28380769	28380769	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	28380769	28380769	T	C	SNP	HERC2	ENST00000261609	human	ensembl	74_37	-1	known	missense	c.12085	p.T4029A	1.000	pfam_Reg_chr_condens,superfamily_RCC1/BLIP-II,pfscan_Reg_chr_condens	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5-like_heme/steroid-bd,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_RCC1/BLIP-II,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5-like_heme/steroid-bd,superfamily_UBA-like,superfamily_CUB_dom,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5-like_heme/steroid-bd,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731				125	0	0	103	7	6.36364
HERC2	0	genome.wustl.edu	37	15	28386919	28386919	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	28386919	28386919	A	G	SNP	HERC2	ENST00000261609	human	ensembl	74_37	-1	known	missense	c.11774	p.F3925S	1.000	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5-like_heme/steroid-bd,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_RCC1/BLIP-II,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5-like_heme/steroid-bd,superfamily_UBA-like,superfamily_CUB_dom,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5-like_heme/steroid-bd,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731				266	0	0	204	16	7.27273
HERC2	0	genome.wustl.edu	37	15	28422651	28422651	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	28422651	28422651	G	A	SNP	HERC2	ENST00000261609	human	ensembl	74_37	-1	known	silent	c.9168	p.G3056	0.999	pfam_Reg_chr_condens,superfamily_RCC1/BLIP-II,pfscan_Reg_chr_condens	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5-like_heme/steroid-bd,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_RCC1/BLIP-II,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5-like_heme/steroid-bd,superfamily_UBA-like,superfamily_CUB_dom,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5-like_heme/steroid-bd,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731				67	0	0	40	8	16.6667
HERC2	0	genome.wustl.edu	37	15	28441714	28441714	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	28441714	28441714	A	G	SNP	HERC2	ENST00000261609	human	ensembl	74_37	-1	known	silent	c.8013	p.A2671	0.999	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5-like_heme/steroid-bd,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_RCC1/BLIP-II,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5-like_heme/steroid-bd,superfamily_UBA-like,superfamily_CUB_dom,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5-like_heme/steroid-bd,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731				71	0	0	57	8	12.3077
HERC2	0	genome.wustl.edu	37	15	28463797	28463797	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	28463797	28463797	T	A	SNP	HERC2	ENST00000261609	human	ensembl	74_37	-1	known	missense	c.5866	p.N1956Y	1.000	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5-like_heme/steroid-bd,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_RCC1/BLIP-II,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5-like_heme/steroid-bd,superfamily_UBA-like,superfamily_CUB_dom,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5-like_heme/steroid-bd,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731				117	0	0	68	6	8.10811
HERC2	0	genome.wustl.edu	37	15	28525254	28525254	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	28525254	28525254	T	C	SNP	HERC2	ENST00000261609	human	ensembl	74_37	-1	known	missense	c.502	p.K168E	1.000	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5-like_heme/steroid-bd,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_RCC1/BLIP-II,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5-like_heme/steroid-bd,superfamily_UBA-like,superfamily_CUB_dom,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5-like_heme/steroid-bd,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731				103	0	0	93	13	12.2642
ENSG00000237850	0	genome.wustl.edu	37	15	28599994	28599994	+	RNA	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	28599994	28599994	C	T	SNP	ENSG00000237850	ENST00000568624	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.999	-	-	-	no_errors	RP11-483E23.2	Clone_based_vega_gene	ENSG00000237850				127	0	0	100	11	9.90991
NDNL2	0	genome.wustl.edu	37	15	29561679	29561679	+	Silent	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	29561679	29561679	C	A	SNP	NDNL2	ENST00000332303	human	ensembl	74_37	-1	known	silent	c.231	p.V77	0.904	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	NDNL2	HGNC	ENSG00000185115				54	0	0	40	14	25.9259
MTMR10	0	genome.wustl.edu	37	15	31234015	31234015	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	31234015	31234015	C	G	SNP	MTMR10	ENST00000435680	human	ensembl	74_37	-1	known	missense	c.1992	p.W664C	1.000	pfam_Myotubularin_assoc	pfam_Myotubularin_assoc,pfam_Myotubularin-like_Pase_dom	-	no_errors	MTMR10	HGNC	ENSG00000166912				47	0	0	43	16	27.1186
TRPM1	0	genome.wustl.edu	37	15	31354888	31354888	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	31354888	31354888	A	G	SNP	TRPM1	ENST00000542188	human	ensembl	74_37	-1	known	missense	c.1034	p.L345P	1.000	NULL	pfam_Ion_trans_dom	-	no_errors	TRPM1	HGNC	ENSG00000134160				91	0	0	73	4	5.19481
TRPM1	0	genome.wustl.edu	37	15	31358307	31358307	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	31358307	31358307	C	T	SNP	TRPM1	ENST00000542188	human	ensembl	74_37	-1	known	silent	c.813	p.K271	0.989	NULL	pfam_Ion_trans_dom	-	no_errors	TRPM1	HGNC	ENSG00000134160				165	0	0	148	12	7.5
KLF13	0	genome.wustl.edu	37	15	31664305	31664305	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	31664305	31664305	G	A	SNP	KLF13	ENST00000307145	human	ensembl	74_37	+1	known	missense	c.670	p.E224K	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	KLF13	HGNC	ENSG00000169926				34	0	0	23	13	36.1111
SCG5	0	genome.wustl.edu	37	15	32936006	32936006	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	32936006	32936006	C	T	SNP	SCG5	ENST00000300175	human	ensembl	74_37	+1	known	silent	c.213	p.P71	0.608	pfam_Secretogranin_V	pfam_Secretogranin_V	-	no_errors	SCG5	HGNC	ENSG00000166922				48	0	0	40	6	13.0435
FMN1	0	genome.wustl.edu	37	15	33357235	33357235	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	33357235	33357235	C	A	SNP	FMN1	ENST00000334528	human	ensembl	74_37	-1	known	missense	c.1415	p.G472V	1.000	prints_Formin_Cappuccino_subfam	pfam_FH2_Formin,smart_FH2_Formin,prints_Formin_Cappuccino_subfam	-	no_errors	FMN1	HGNC	ENSG00000248905				207	0	0	170	21	10.9948
FMN1	0	genome.wustl.edu	37	15	33358942	33358942	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	33358942	33358942	C	A	SNP	FMN1	ENST00000334528	human	ensembl	74_37	-1	known	missense	c.1144	p.G382C	0.000	NULL	pfam_FH2_Formin,smart_FH2_Formin,prints_Formin_Cappuccino_subfam	-	no_errors	FMN1	HGNC	ENSG00000248905				123	1	0.806452	109	8	6.83761
FMN1	0	genome.wustl.edu	37	15	33359555	33359555	+	Silent	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	33359555	33359555	A	C	SNP	FMN1	ENST00000334528	human	ensembl	74_37	-1	known	silent	c.531	p.S177	0.001	NULL	pfam_FH2_Formin,smart_FH2_Formin,prints_Formin_Cappuccino_subfam	-	no_errors	FMN1	HGNC	ENSG00000248905				78	0	0	54	20	27.027
RYR3	0	genome.wustl.edu	37	15	33895365	33895365	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	33895365	33895365	C	T	SNP	RYR3	ENST00000389232	human	ensembl	74_37	+1	known	missense	c.1964	p.A655V	0.997	pfscan_B30.2/SPRY	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838				123	0	0	133	14	9.52381
RYR3	0	genome.wustl.edu	37	15	34140608	34140608	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	34140608	34140608	G	A	SNP	RYR3	ENST00000389232	human	ensembl	74_37	+1	known	silent	c.13614	p.L4538	1.000	NULL	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838				77	0	0	76	6	7.31707
CHRM5	0	genome.wustl.edu	37	15	34355236	34355236	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	34355236	34355236	G	A	SNP	CHRM5	ENST00000383263	human	ensembl	74_37	+1	known	nonsense	c.318	p.W106*	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Musac_Ach_M5_rcpt,prints_Musac_Ach_rcpt,prints_GPCR_Rhodpsn	-	no_errors	CHRM5	HGNC	ENSG00000184984				65	0	0	74	5	6.32911
SLC12A6	0	genome.wustl.edu	37	15	34537953	34537953	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	34537953	34537953	T	C	SNP	SLC12A6	ENST00000558589	human	ensembl	74_37	-1	known	missense	c.1738	p.T580A	1.000	pfam_AA-permease/SLC12A_dom,tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease/SLC12A_dom,pfam_K/Cl_cotranspt_1/3,prints_KCL_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A6	HGNC	ENSG00000140199				84	0	0	81	5	5.81395
NUTM1	0	genome.wustl.edu	37	15	34648162	34648162	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	34648162	34648162	T	C	SNP	NUTM1	ENST00000333756	human	ensembl	74_37	+1	known	silent	c.1869	p.C623	0.022	NULL	NULL	-	no_errors	NUTM1	HGNC	ENSG00000184507				43	0	0	41	4	8.88889
GJD2	0	genome.wustl.edu	37	15	35045359	35045359	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	35045359	35045359	A	T	SNP	GJD2	ENST00000290374	human	ensembl	74_37	-1	known	missense	c.286	p.Y96N	1.000	pfam_Connexin_N,prints_Connexin	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin,prints_Connexin36	-	no_errors	GJD2	HGNC	ENSG00000159248				99	0	0	109	10	8.40336
AQR	0	genome.wustl.edu	37	15	35185907	35185907	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	35185907	35185907	T	C	SNP	AQR	ENST00000156471	human	ensembl	74_37	-1	known	missense	c.2528	p.N843S	1.000	superfamily_P-loop_NTPase	superfamily_P-loop_NTPase	-	no_errors	AQR	HGNC	ENSG00000021776				272	0	0	201	14	6.51163
C15orf54	0	genome.wustl.edu	37	15	39544627	39544627	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	39544627	39544627	A	G	SNP	C15orf54	ENST00000318578	human	ensembl	74_37	+1	known	silent	c.291	p.Q97	0.819	NULL	NULL	-	no_errors	C15orf54	HGNC	ENSG00000175746				127	0	0	98	7	6.66667
FSIP1	0	genome.wustl.edu	37	15	40005645	40005645	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	40005645	40005645	C	T	SNP	FSIP1	ENST00000350221	human	ensembl	74_37	-1	known	silent	c.1188	p.V396	0.966	NULL	NULL	-	no_errors	FSIP1	HGNC	ENSG00000150667				192	0	0	134	9	6.29371
FSIP1	0	genome.wustl.edu	37	15	40068628	40068628	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	40068628	40068628	A	G	SNP	FSIP1	ENST00000350221	human	ensembl	74_37	-1	known	missense	c.98	p.V33A	1.000	NULL	NULL	-	no_errors	FSIP1	HGNC	ENSG00000150667				137	0	0	111	12	9.7561
GPR176	0	genome.wustl.edu	37	15	40094113	40094113	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	40094113	40094113	A	G	SNP	GPR176	ENST00000561100	human	ensembl	74_37	-1	known	silent	c.768	p.Y256	0.491	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR176	HGNC	ENSG00000166073				97	0	0	78	12	13.3333
GPR176	0	genome.wustl.edu	37	15	40099369	40099369	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	40099369	40099369	A	C	SNP	GPR176	ENST00000561100	human	ensembl	74_37	-1	known	missense	c.263	p.I88S	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR176	HGNC	ENSG00000166073				137	0	0	119	11	8.46154
PAK6	0	genome.wustl.edu	37	15	40558052	40558052	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	40558052	40558052	C	T	SNP	PAK6	ENST00000260404	human	ensembl	74_37	+1	known	missense	c.214	p.R72W	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_CRIB_dom,superfamily_Kinase-like_dom,smart_CRIB_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRIB_dom,pfscan_Prot_kinase_dom	-	no_errors	PAK6	HGNC	ENSG00000137843				29	0	0	23	8	25.8065
PLCB2	0	genome.wustl.edu	37	15	40594733	40594733	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	40594733	40594733	G	A	SNP	PLCB2	ENST00000260402	human	ensembl	74_37	-1	known	silent	c.309	p.S103	0.667	pirsf_PLC-beta	pirsf_PLC-beta,pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLC-beta_C,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,prints_Pinositol_PLipase_C,pfscan_C2_dom,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCB2	HGNC	ENSG00000137841				44	0	0	30	9	23.0769
DISP2	0	genome.wustl.edu	37	15	40656101	40656101	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	40656101	40656101	A	C	SNP	DISP2	ENST00000267889	human	ensembl	74_37	+1	known	missense	c.395	p.Q132P	0.981	NULL	pfscan_SSD	-	no_errors	DISP2	HGNC	ENSG00000140323				66	0	0	56	3	5.08475
CHST14	0	genome.wustl.edu	37	15	40764141	40764141	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	40764141	40764141	G	C	SNP	CHST14	ENST00000306243	human	ensembl	74_37	+1	known	missense	c.729	p.R243S	0.999	pfam_Sulfotransferase	pfam_Sulfotransferase	-	no_errors	CHST14	HGNC	ENSG00000169105				170	0	0	152	12	7.31707
CHST14	0	genome.wustl.edu	37	15	40764146	40764146	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	40764146	40764146	A	G	SNP	CHST14	ENST00000306243	human	ensembl	74_37	+1	known	missense	c.734	p.Y245C	1.000	pfam_Sulfotransferase	pfam_Sulfotransferase	-	no_errors	CHST14	HGNC	ENSG00000169105				162	0	0	153	13	7.83133
RPUSD2	0	genome.wustl.edu	37	15	40862035	40862035	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	40862035	40862035	A	G	SNP	RPUSD2	ENST00000315616	human	ensembl	74_37	+1	known	missense	c.499	p.S167G	1.000	tigrfam_PsdUridine_synth_RluC/D	pfam_PsdUridine_synth_RsuA/RluD,superfamily_PsdUridine_synth_cat_dom,tigrfam_PsdUridine_synth_RluC/D	-	no_errors	RPUSD2	HGNC	ENSG00000166133				36	0	0	18	5	21.7391
RPUSD2	0	genome.wustl.edu	37	15	40866263	40866263	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	40866263	40866263	G	A	SNP	RPUSD2	ENST00000315616	human	ensembl	74_37	+1	known	missense	c.1441	p.A481T	0.000	superfamily_PsdUridine_synth_cat_dom	pfam_PsdUridine_synth_RsuA/RluD,superfamily_PsdUridine_synth_cat_dom,tigrfam_PsdUridine_synth_RluC/D	-	no_errors	RPUSD2	HGNC	ENSG00000166133				73	0	0	57	4	6.55738
CASC5	0	genome.wustl.edu	37	15	40915370	40915370	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	40915370	40915370	A	T	SNP	CASC5	ENST00000346991	human	ensembl	74_37	+1	known	missense	c.2986	p.T996S	0.006	NULL	NULL	-	no_errors	CASC5	HGNC	ENSG00000137812				76	0	0	47	7	12.963
VPS18	0	genome.wustl.edu	37	15	41191463	41191463	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	41191463	41191463	G	T	SNP	VPS18	ENST00000220509	human	ensembl	74_37	+1	known	missense	c.447	p.K149N	0.940	NULL	pfam_Pep3_Vps18,pfam_Clathrin_H-chain/VPS_repeat,superfamily_ARM-type_fold	-	no_errors	VPS18	HGNC	ENSG00000104142				47	0	0	50	5	9.09091
VPS18	0	genome.wustl.edu	37	15	41192724	41192724	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	41192724	41192724	G	A	SNP	VPS18	ENST00000220509	human	ensembl	74_37	+1	known	missense	c.1708	p.V570M	0.999	superfamily_ARM-type_fold	pfam_Pep3_Vps18,pfam_Clathrin_H-chain/VPS_repeat,superfamily_ARM-type_fold	-	no_errors	VPS18	HGNC	ENSG00000104142				113	0	0	114	13	10.2362
INO80	0	genome.wustl.edu	37	15	41352087	41352087	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	41352087	41352087	A	C	SNP	INO80	ENST00000361937	human	ensembl	74_37	-1	known	missense	c.1820	p.V607G	1.000	pfam_SNF2_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_SNF2_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	INO80	HGNC	ENSG00000128908				103	1	0.961538	75	9	10.7143
EXD1	0	genome.wustl.edu	37	15	41482161	41482161	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	41482161	41482161	A	T	SNP	EXD1	ENST00000314992	human	ensembl	74_37	-1	known	missense	c.856	p.S286T	0.789	superfamily_RNaseH-like_dom	pfam_3'-5'_exonuclease_dom,superfamily_RNaseH-like_dom,smart_3'-5'_exonuclease_dom	-	no_errors	EXD1	HGNC	ENSG00000178997				111	0	0	112	10	8.19672
EXD1	0	genome.wustl.edu	37	15	41509324	41509324	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	41509324	41509324	G	A	SNP	EXD1	ENST00000314992	human	ensembl	74_37	-1	known	silent	c.57	p.G19	0.897	NULL	pfam_3'-5'_exonuclease_dom,superfamily_RNaseH-like_dom,smart_3'-5'_exonuclease_dom	-	no_errors	EXD1	HGNC	ENSG00000178997				56	0	0	42	6	12.5
NUSAP1	0	genome.wustl.edu	37	15	41663789	41663789	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	41663789	41663789	T	A	SNP	NUSAP1	ENST00000559596	human	ensembl	74_37	+1	known	missense	c.913	p.S305T	1.000	NULL	NULL	-	no_errors	NUSAP1	HGNC	ENSG00000137804				68	0	0	56	4	6.66667
RPAP1	0	genome.wustl.edu	37	15	41815492	41815492	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	41815492	41815492	G	A	SNP	RPAP1	ENST00000304330	human	ensembl	74_37	-1	known	silent	c.2497	p.L833	0.997	NULL	pfam_RNA_pol_II_AP1_C,pfam_RNA_pol_II_AP1_N,superfamily_ARM-type_fold	-	no_errors	RPAP1	HGNC	ENSG00000103932				54	0	0	42	6	12.5
MGA	0	genome.wustl.edu	37	15	42028759	42028759	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	42028759	42028759	C	T	SNP	MGA	ENST00000219905	human	ensembl	74_37	+1	known	nonsense	c.4297	p.Q1433*	0.987	NULL	pfam_TF_T-box,pfam_bHLH_dom,superfamily_p53-like_TF_DNA-bd,superfamily_bHLH_dom,smart_TF_T-box,smart_bHLH_dom,pfscan_bHLH_dom,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	MGA	HGNC	ENSG00000174197				77	0	0	57	7	10.9375
MGA	0	genome.wustl.edu	37	15	42041713	42041713	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	42041713	42041713	A	G	SNP	MGA	ENST00000219905	human	ensembl	74_37	+1	known	missense	c.5908	p.R1970G	0.994	NULL	pfam_TF_T-box,pfam_bHLH_dom,superfamily_p53-like_TF_DNA-bd,superfamily_bHLH_dom,smart_TF_T-box,smart_bHLH_dom,pfscan_bHLH_dom,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	MGA	HGNC	ENSG00000174197				86	0	0	58	5	7.93651
SPTBN5	0	genome.wustl.edu	37	15	42147511	42147511	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	42147511	42147511	G	A	SNP	SPTBN5	ENST00000320955	human	ensembl	74_37	-1	known	nonsense	c.9334	p.R3112*	0.001	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTBN5	HGNC	ENSG00000137877				36	0	0	35	3	7.89474
PLA2G4F	0	genome.wustl.edu	37	15	42437796	42437796	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	42437796	42437796	T	C	SNP	PLA2G4F	ENST00000397272	human	ensembl	74_37	-1	known	missense	c.1763	p.Y588C	0.008	superfamily_Acyl_Trfase/lysoPLipase,smart_LysoPLipase_cat_dom,pfscan_LysoPLipase_cat_dom	pfam_LysoPLipase_cat_dom,pfam_C2_dom,superfamily_Acyl_Trfase/lysoPLipase,superfamily_C2_dom,smart_C2_dom,smart_LysoPLipase_cat_dom,pfscan_C2_dom,pfscan_LysoPLipase_cat_dom	-	no_errors	PLA2G4F	HGNC	ENSG00000168907				125	0	0	134	10	6.94444
ZNF106	0	genome.wustl.edu	37	15	42731697	42731697	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	42731697	42731697	C	T	SNP	ZNF106	ENST00000263805	human	ensembl	74_37	-1	known	missense	c.4009	p.A1337T	0.983	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_Znf_C2H2-like,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	ZNF106	HGNC	ENSG00000103994				154	0	0	138	13	8.60927
CDAN1	0	genome.wustl.edu	37	15	43021290	43021290	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	43021290	43021290	G	A	SNP	CDAN1	ENST00000356231	human	ensembl	74_37	-1	known	missense	c.2576	p.P859L	1.000	NULL	NULL	-	no_errors	CDAN1	HGNC	ENSG00000140326				106	0	0	79	16	16.8421
CDAN1	0	genome.wustl.edu	37	15	43026186	43026186	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	43026186	43026186	A	T	SNP	CDAN1	ENST00000356231	human	ensembl	74_37	-1	known	missense	c.1317	p.N439K	1.000	NULL	NULL	-	no_errors	CDAN1	HGNC	ENSG00000140326				101	0	0	64	9	12.3288
UBR1	0	genome.wustl.edu	37	15	43367236	43367236	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	43367236	43367236	A	G	SNP	UBR1	ENST00000290650	human	ensembl	74_37	-1	known	missense	c.469	p.W157R	1.000	pfam_Znf_N-recognin,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	pfam_ClpS_core,pfam_Znf_N-recognin,superfamily_Ribosomal_L7/12_C/ClpS-like,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR1	HGNC	ENSG00000159459				379	0	0	238	65	21.4521
EPB42	0	genome.wustl.edu	37	15	43500968	43500968	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	43500968	43500968	G	A	SNP	EPB42	ENST00000300215	human	ensembl	74_37	-1	known	nonsense	c.928	p.R310*	0.988	pfam_Transglutaminase-like,smart_Transglutaminase-like	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	EPB42	HGNC	ENSG00000166947				38	0	0	38	13	25.4902
LCMT2	0	genome.wustl.edu	37	15	43622496	43622496	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	43622496	43622496	C	T	SNP	LCMT2	ENST00000305641	human	ensembl	74_37	-1	known	silent	c.192	p.R64	0.522	pfam_LCM_MeTrfase	pfam_LCM_MeTrfase	-	no_errors	LCMT2	HGNC	ENSG00000168806				44	0	0	45	9	16.6667
TP53BP1	0	genome.wustl.edu	37	15	43701152	43701152	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	43701152	43701152	T	C	SNP	TP53BP1	ENST00000382044	human	ensembl	74_37	-1	known	missense	c.5543	p.Y1848C	1.000	superfamily_BRCT_dom,pfscan_BRCT_dom	pfam_53-BP1_Tudor,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	TP53BP1	HGNC	ENSG00000067369				99	0	0	83	14	14.433
TP53BP1	0	genome.wustl.edu	37	15	43714210	43714210	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	43714210	43714210	A	G	SNP	TP53BP1	ENST00000382044	human	ensembl	74_37	-1	known	missense	c.3943	p.S1315P	1.000	NULL	pfam_53-BP1_Tudor,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	TP53BP1	HGNC	ENSG00000067369				88	0	0	94	8	7.84314
TP53BP1	0	genome.wustl.edu	37	15	43733752	43733752	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	43733752	43733752	A	T	SNP	TP53BP1	ENST00000382044	human	ensembl	74_37	-1	known	missense	c.3070	p.S1024T	1.000	NULL	pfam_53-BP1_Tudor,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	TP53BP1	HGNC	ENSG00000067369				183	0	0	118	11	8.52713
MAP1A	0	genome.wustl.edu	37	15	43817621	43817621	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	43817621	43817621	T	C	SNP	MAP1A	ENST00000399453	human	ensembl	74_37	+1	known	missense	c.3950	p.L1317P	0.997	NULL	NULL	-	no_errors	MAP1A	HGNC	ENSG00000166963				105	0	0	86	10	10.4167
STRC	0	genome.wustl.edu	37	15	43892737	43892737	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	43892737	43892737	A	G	SNP	STRC	ENST00000450892	human	ensembl	74_37	-1	known	missense	c.4988	p.I1663T	0.994	NULL	NULL	-	no_errors	STRC	HGNC	ENSG00000242866				74	0	0	48	13	21.3115
CATSPER2	0	genome.wustl.edu	37	15	43924970	43924970	+	Silent	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	43924970	43924970	G	T	SNP	CATSPER2	ENST00000321596	human	ensembl	74_37	-1	known	silent	c.1341	p.S447	0.003	NULL	pfam_Ion_trans_dom	-	no_errors	CATSPER2	HGNC	ENSG00000166762				147	0	0	144	11	7.09677
CKMT1A	0	genome.wustl.edu	37	15	43991208	43991208	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	43991208	43991208	A	G	SNP	CKMT1A	ENST00000413453	human	ensembl	74_37	+1	known	missense	c.1175	p.Y392C	1.000	pfam_ATP-guanido_PTrfase_cat	pfam_ATP-guanido_PTrfase_cat,pfam_ATP-guanido_PTrfase_N,superfamily_ATP-guanido_PTrfase_N	-	no_errors	CKMT1A	HGNC	ENSG00000223572				180	0	0	123	16	11.5108
CATSPER2P1	0	genome.wustl.edu	37	15	44029113	44029113	+	RNA	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	44029113	44029113	A	T	SNP	CATSPER2P1	ENST00000381680	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.699	-	-	-	no_errors	CATSPER2P1	HGNC	ENSG00000205771				95	0	0	86	7	7.52688
SPG11	0	genome.wustl.edu	37	15	44877948	44877948	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	44877948	44877948	A	G	SNP	SPG11	ENST00000261866	human	ensembl	74_37	-1	known	silent	c.5007	p.L1669	0.994	NULL	NULL	-	no_errors	SPG11	HGNC	ENSG00000104133				144	0	0	102	7	6.42202
DUOX2	0	genome.wustl.edu	37	15	45398417	45398417	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	45398417	45398417	A	G	SNP	DUOX2	ENST00000389039	human	ensembl	74_37	-1	known	missense	c.2054	p.V685A	0.960	NULL	pfam_Haem_peroxidase_animal,pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_EF_hand_dom,superfamily_Haem_peroxidase,superfamily_Riboflavin_synthase-like_b-brl,smart_EF_hand_dom,pfscan_EF_hand_dom,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr,prints_Recoverin	-	no_errors	DUOX2	HGNC	ENSG00000140279				34	0	0	42	5	10.6383
DUOXA1	0	genome.wustl.edu	37	15	45415136	45415136	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	45415136	45415136	C	A	SNP	DUOXA1	ENST00000267803	human	ensembl	74_37	-1	known	missense	c.77	p.S26I	0.639	pfam_Dual_oxidase_maturation_fac	pfam_Dual_oxidase_maturation_fac	-	no_errors	DUOXA1	HGNC	ENSG00000140254				91	0	0	89	10	10.101
DUOX1	0	genome.wustl.edu	37	15	45445594	45445594	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	45445594	45445594	C	T	SNP	DUOX1	ENST00000321429	human	ensembl	74_37	+1	known	silent	c.3441	p.G1147	1.000	pfam_Fe3_Rdtase_TM_dom	pfam_Haem_peroxidase_animal,pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_EF_hand_dom,superfamily_Haem_peroxidase,superfamily_Riboflavin_synthase-like_b-brl,smart_EF_hand_dom,prints_Haem_peroxidase_animal_subgr,prints_Recoverin,pfscan_EF_hand_dom,pfscan_Haem_peroxidase_animal	-	no_errors	DUOX1	HGNC	ENSG00000137857				178	0	0	162	36	18.1818
SEMA6D	0	genome.wustl.edu	37	15	48060784	48060784	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	48060784	48060784	A	G	SNP	SEMA6D	ENST00000316364	human	ensembl	74_37	+1	known	missense	c.1772	p.E591G	1.000	NULL	pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,pfscan_Semap_dom	-	no_errors	SEMA6D	HGNC	ENSG00000137872				68	0	0	47	3	6
SEMA6D	0	genome.wustl.edu	37	15	48063628	48063628	+	Silent	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	48063628	48063628	T	G	SNP	SEMA6D	ENST00000316364	human	ensembl	74_37	+1	known	silent	c.2868	p.T956	1.000	NULL	pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,pfscan_Semap_dom	-	no_errors	SEMA6D	HGNC	ENSG00000137872				110	0	0	92	9	8.91089
SEMA6D	0	genome.wustl.edu	37	15	48063661	48063661	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	48063661	48063661	T	A	SNP	SEMA6D	ENST00000316364	human	ensembl	74_37	+1	known	missense	c.2901	p.N967K	0.916	NULL	pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,pfscan_Semap_dom	-	no_errors	SEMA6D	HGNC	ENSG00000137872				118	0	0	83	8	8.79121
SEMA6D	0	genome.wustl.edu	37	15	48063820	48063820	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	48063820	48063820	T	C	SNP	SEMA6D	ENST00000316364	human	ensembl	74_37	+1	known	silent	c.3060	p.H1020	0.996	NULL	pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,pfscan_Semap_dom	-	no_errors	SEMA6D	HGNC	ENSG00000137872				160	0	0	150	9	5.66038
DUT	0	genome.wustl.edu	37	15	48626625	48626625	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	48626625	48626625	A	G	SNP	DUT	ENST00000331200	human	ensembl	74_37	+1	known	missense	c.431	p.Y144C	0.995	pfam_dUTP_pyroPase,tigrfam_dUTP_pyroPase_sf	pfam_dUTP_pyroPase,tigrfam_dUTP_pyroPase_sf	-	no_errors	DUT	HGNC	ENSG00000128951				80	0	0	60	6	9.09091
FBN1	0	genome.wustl.edu	37	15	48717623	48717623	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	48717623	48717623	A	G	SNP	FBN1	ENST00000316623	human	ensembl	74_37	-1	known	missense	c.7396	p.Y2466H	1.000	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pirsf_FBN	pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pirsf_FBN,pfscan_EG-like_dom	-	no_errors	FBN1	HGNC	ENSG00000166147				77	0	0	81	6	6.89655
FBN1	0	genome.wustl.edu	37	15	48796050	48796050	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	48796050	48796050	A	G	SNP	FBN1	ENST00000316623	human	ensembl	74_37	-1	known	missense	c.2047	p.C683R	1.000	pfam_TB_dom,superfamily_TB_dom,pirsf_FBN	pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pirsf_FBN,pfscan_EG-like_dom	-	no_errors	FBN1	HGNC	ENSG00000166147				141	0	0	109	8	6.83761
FBN1	0	genome.wustl.edu	37	15	48829959	48829959	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	48829959	48829959	G	A	SNP	FBN1	ENST00000316623	human	ensembl	74_37	-1	known	silent	c.585	p.C195	1.000	pfam_TB_dom,superfamily_TB_dom,pirsf_FBN	pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pirsf_FBN,pfscan_EG-like_dom	-	no_errors	FBN1	HGNC	ENSG00000166147				126	0	0	123	12	8.88889
FBN1	0	genome.wustl.edu	37	15	48936859	48936859	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	48936859	48936859	T	C	SNP	FBN1	ENST00000316623	human	ensembl	74_37	-1	known	silent	c.108	p.E36	0.951	pirsf_FBN	pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pirsf_FBN,pfscan_EG-like_dom	-	no_errors	FBN1	HGNC	ENSG00000166147				169	0	0	169	22	11.5183
FBN1	0	genome.wustl.edu	37	15	48936889	48936889	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	48936889	48936889	G	A	SNP	FBN1	ENST00000316623	human	ensembl	74_37	-1	known	silent	c.78	p.D26	0.392	pirsf_FBN	pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pirsf_FBN,pfscan_EG-like_dom	-	no_errors	FBN1	HGNC	ENSG00000166147				120	0	0	131	12	8.39161
CEP152	0	genome.wustl.edu	37	15	49081124	49081124	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	49081124	49081124	A	G	SNP	CEP152	ENST00000380950	human	ensembl	74_37	-1	known	silent	c.1047	p.S349	0.741	NULL	NULL	-	no_errors	CEP152	HGNC	ENSG00000103995				161	0	0	123	13	9.55882
SHC4	0	genome.wustl.edu	37	15	49135610	49135610	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	49135610	49135610	G	A	SNP	SHC4	ENST00000332408	human	ensembl	74_37	-1	known	silent	c.1479	p.C493	0.001	NULL	pfam_PTB/PI_dom,pfam_SH2,smart_PTB/PI_dom,smart_SH2,pfscan_PTB/PI_dom,pfscan_SH2,prints_PID_Shc-like,prints_SH2	-	no_errors	SHC4	HGNC	ENSG00000185634				198	0	0	139	31	18.2353
SHC4	0	genome.wustl.edu	37	15	49176493	49176493	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	49176493	49176493	C	T	SNP	SHC4	ENST00000332408	human	ensembl	74_37	-1	known	silent	c.792	p.L264	1.000	pfam_PTB/PI_dom,smart_PTB/PI_dom,pfscan_PTB/PI_dom,prints_PID_Shc-like	pfam_PTB/PI_dom,pfam_SH2,smart_PTB/PI_dom,smart_SH2,pfscan_PTB/PI_dom,pfscan_SH2,prints_PID_Shc-like,prints_SH2	-	no_errors	SHC4	HGNC	ENSG00000185634				78	0	0	65	7	9.72222
SECISBP2L	0	genome.wustl.edu	37	15	49292172	49292172	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	49292172	49292172	T	G	SNP	SECISBP2L	ENST00000559471	human	ensembl	74_37	-1	known	missense	c.2261	p.E754A	1.000	pfam_Ribosomal_L7Ae/L30e/S12e/Gad45	pfam_Ribosomal_L7Ae/L30e/S12e/Gad45	-	no_errors	SECISBP2L	HGNC	ENSG00000138593				132	0	0	71	19	21.1111
SECISBP2L	0	genome.wustl.edu	37	15	49325281	49325281	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	49325281	49325281	T	C	SNP	SECISBP2L	ENST00000559471	human	ensembl	74_37	-1	known	missense	c.545	p.Q182R	0.939	NULL	pfam_Ribosomal_L7Ae/L30e/S12e/Gad45	-	no_errors	SECISBP2L	HGNC	ENSG00000138593				83	0	0	55	7	11.2903
GALK2	0	genome.wustl.edu	37	15	49509474	49509474	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	49509474	49509474	A	T	SNP	GALK2	ENST00000560031	human	ensembl	74_37	+1	known	missense	c.230	p.Y77F	0.066	superfamily_Ribosomal_S5_D2-typ_fold,pirsf_Galactokinase,tigrfam_Galactokinase	pfam_GalKase_gal-bd,pfam_GHMP_kinase_N_dom,pfam_GHMP_kinase_C_dom,superfamily_Ribosomal_S5_D2-typ_fold,pirsf_Galactokinase,prints_Mevalonate/galactokinase,prints_Galactokinase,tigrfam_Galactokinase	-	no_errors	GALK2	HGNC	ENSG00000156958				135	0	0	123	9	6.81818
DTWD1	0	genome.wustl.edu	37	15	49926794	49926794	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	49926794	49926794	A	G	SNP	DTWD1	ENST00000251250	human	ensembl	74_37	+1	known	missense	c.470	p.Q157R	1.000	pfam_DTW	pfam_DTW	-	no_errors	DTWD1	HGNC	ENSG00000104047				118	0	0	76	5	6.17284
ATP8B4	0	genome.wustl.edu	37	15	50264895	50264895	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	50264895	50264895	G	A	SNP	ATP8B4	ENST00000284509	human	ensembl	74_37	-1	known	missense	c.1127	p.T376M	1.000	tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP8B4	HGNC	ENSG00000104043				63	0	0	50	13	20.6349
HDC	0	genome.wustl.edu	37	15	50535355	50535355	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	50535355	50535355	C	T	SNP	HDC	ENST00000267845	human	ensembl	74_37	-1	known	silent	c.1227	p.V409	1.000	pfam_PyrdxlP-dep_de-COase,superfamily_PyrdxlP-dep_Trfase,prints_Aromatic_deC	pfam_PyrdxlP-dep_de-COase,superfamily_PyrdxlP-dep_Trfase,prints_Aromatic_deC	-	no_errors	HDC	HGNC	ENSG00000140287				73	0	0	59	6	9.23077
USP8	0	genome.wustl.edu	37	15	50769071	50769071	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	50769071	50769071	A	G	SNP	USP8	ENST00000307179	human	ensembl	74_37	+1	known	missense	c.875	p.N292S	0.986	pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,pfscan_Rhodanese-like_dom	pfam_Peptidase_C19/C67,pfam_USP8_dimer,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,superfamily_WW_dom,pfscan_Rhodanese-like_dom,pfscan_Peptidase_C19/C67	-	no_errors	USP8	HGNC	ENSG00000138592				120	0	0	83	12	12.6316
TRPM7	0	genome.wustl.edu	37	15	50886647	50886647	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	50886647	50886647	C	T	SNP	TRPM7	ENST00000313478	human	ensembl	74_37	-1	known	missense	c.3454	p.D1152N	1.000	NULL	pfam_MHCK_EF2_kinase,pfam_Ion_trans_dom,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	TRPM7	HGNC	ENSG00000092439				279	0	0	147	14	8.69565
AP4E1	0	genome.wustl.edu	37	15	51260462	51260462	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	51260462	51260462	A	G	SNP	AP4E1	ENST00000261842	human	ensembl	74_37	+1	known	silent	c.1854	p.V618	0.995	superfamily_ARM-type_fold,pirsf_AP4_complex_esu	pfam_Clathrin/coatomer_adapt-like_N,pfam_Coatomer_bsu_C,superfamily_ARM-type_fold,pirsf_AP4_complex_esu	-	no_errors	AP4E1	HGNC	ENSG00000081014				34	0	0	19	3	13.6364
AP4E1	0	genome.wustl.edu	37	15	51285692	51285692	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	51285692	51285692	A	T	SNP	AP4E1	ENST00000261842	human	ensembl	74_37	+1	known	missense	c.2216	p.E739V	0.460	pirsf_AP4_complex_esu	pfam_Clathrin/coatomer_adapt-like_N,pfam_Coatomer_bsu_C,superfamily_ARM-type_fold,pirsf_AP4_complex_esu	-	no_errors	AP4E1	HGNC	ENSG00000081014				54	0	0	30	5	14.2857
TNFAIP8L3	0	genome.wustl.edu	37	15	51350349	51350349	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	51350349	51350349	G	A	SNP	TNFAIP8L3	ENST00000327536	human	ensembl	74_37	-1	known	missense	c.608	p.T203I	0.992	pfam_DUF758	pfam_DUF758	-	no_errors	TNFAIP8L3	HGNC	ENSG00000183578				96	0	0	99	16	13.913
GLDN	0	genome.wustl.edu	37	15	51634204	51634204	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	51634204	51634204	G	A	SNP	GLDN	ENST00000335449	human	ensembl	74_37	+1	known	missense	c.323	p.S108N	1.000	NULL	pfam_Olfac-like,pfam_Collagen,smart_Olfac-like,pfscan_Olfac-like	-	no_errors	GLDN	HGNC	ENSG00000186417				61	0	0	62	27	30.3371
GLDN	0	genome.wustl.edu	37	15	51689758	51689758	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	51689758	51689758	C	T	SNP	GLDN	ENST00000335449	human	ensembl	74_37	+1	known	silent	c.780	p.G260	0.802	NULL	pfam_Olfac-like,pfam_Collagen,smart_Olfac-like,pfscan_Olfac-like	-	no_errors	GLDN	HGNC	ENSG00000186417				55	0	0	53	7	11.6667
DMXL2	0	genome.wustl.edu	37	15	51828742	51828742	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	51828742	51828742	T	A	SNP	DMXL2	ENST00000543779	human	ensembl	74_37	-1	known	missense	c.1935	p.R645S	0.965	NULL	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL2	HGNC	ENSG00000104093				71	0	0	43	5	10.4167
MAPK6	0	genome.wustl.edu	37	15	52339143	52339143	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	52339143	52339143	G	A	SNP	MAPK6	ENST00000261845	human	ensembl	74_37	+1	known	silent	c.486	p.T162	0.414	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_MAPK_ERK3/4	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_MAPK_ERK3/4	-	no_errors	MAPK6	HGNC	ENSG00000069956				130	0	0	85	21	19.8113
MYO5C	0	genome.wustl.edu	37	15	52503982	52503982	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	52503982	52503982	T	C	SNP	MYO5C	ENST00000261839	human	ensembl	74_37	-1	known	missense	c.4241	p.N1414S	0.000	NULL	pfam_Myosin_head_motor_dom,pfam_Dil_domain,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_Dilute,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO5C	HGNC	ENSG00000128833				191	0	0	181	14	7.17949
MYO5C	0	genome.wustl.edu	37	15	52564895	52564895	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	52564895	52564895	C	T	SNP	MYO5C	ENST00000261839	human	ensembl	74_37	-1	known	missense	c.632	p.R211H	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Dil_domain,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_Dilute,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO5C	HGNC	ENSG00000128833				90	0	0	51	14	21.5385
MYO5A	0	genome.wustl.edu	37	15	52680091	52680091	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	52680091	52680091	C	A	SNP	MYO5A	ENST00000358212	human	ensembl	74_37	-1	known	nonsense	c.1687	p.G563*	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Dil_domain,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Skp1_comp_dimer,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_Dilute,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO5A	HGNC	ENSG00000197535				107	0	0	69	4	5.47945
MYO5A	0	genome.wustl.edu	37	15	52689518	52689518	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	52689518	52689518	C	T	SNP	MYO5A	ENST00000358212	human	ensembl	74_37	-1	known	missense	c.1199	p.R400H	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Dil_domain,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Skp1_comp_dimer,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_Dilute,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO5A	HGNC	ENSG00000197535				75	0	0	40	17	29.8246
ARPP19	0	genome.wustl.edu	37	15	52849361	52849361	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	52849361	52849361	C	T	SNP	ARPP19	ENST00000249822	human	ensembl	74_37	-1	known	missense	c.104	p.R35K	1.000	pfam_Endosulphine	pfam_Endosulphine	-	no_errors	ARPP19	HGNC	ENSG00000128989				137	0	0	91	11	10.7843
FAM214A	0	genome.wustl.edu	37	15	52902186	52902186	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	52902186	52902186	C	T	SNP	FAM214A	ENST00000261844	human	ensembl	74_37	-1	known	missense	c.925	p.D309N	0.996	NULL	NULL	-	no_errors	FAM214A	HGNC	ENSG00000047346				33	0	0	27	4	12.9032
ONECUT1	0	genome.wustl.edu	37	15	53081207	53081207	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	53081207	53081207	A	G	SNP	ONECUT1	ENST00000305901	human	ensembl	74_37	-1	known	missense	c.875	p.I292T	1.000	pfam_Hmoeo_CUT,superfamily_Lambda_DNA-bd_dom,pfscan_Hmoeo_CUT	pfam_Hmoeo_CUT,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Hmoeo_CUT	-	no_errors	ONECUT1	HGNC	ENSG00000169856				129	0	0	96	8	7.69231
UNC13C	0	genome.wustl.edu	37	15	54307698	54307698	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	54307698	54307698	T	C	SNP	UNC13C	ENST00000260323	human	ensembl	74_37	+1	known	silent	c.2598	p.D866	0.735	NULL	pfam_Munc13_subgr_dom-2,pfam_Ca-dep_secretion_activator,pfam_C2_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_dom,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13C	HGNC	ENSG00000137766				90	0	0	66	7	9.58904
UNC13C	0	genome.wustl.edu	37	15	54307737	54307737	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	54307737	54307737	T	C	SNP	UNC13C	ENST00000260323	human	ensembl	74_37	+1	known	silent	c.2637	p.V879	0.981	NULL	pfam_Munc13_subgr_dom-2,pfam_Ca-dep_secretion_activator,pfam_C2_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_dom,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13C	HGNC	ENSG00000137766				131	0	0	74	9	10.8434
RAB27A	0	genome.wustl.edu	37	15	55516108	55516108	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	55516108	55516108	A	G	SNP	RAB27A	ENST00000336787	human	ensembl	74_37	-1	known	missense	c.446	p.I149T	0.835	pfam_Small_GTPase,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Ras,smart_Small_GTPase_Rho,smart_Ran_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Ras,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB27A	HGNC	ENSG00000069974				265	0	0	210	18	7.89474
RAB27A	0	genome.wustl.edu	37	15	55522617	55522617	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	55522617	55522617	T	A	SNP	RAB27A	ENST00000336787	human	ensembl	74_37	-1	known	missense	c.221	p.D74V	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Ras,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Ras,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB27A	HGNC	ENSG00000069974				136	0	0	127	12	8.63309
CCPG1	0	genome.wustl.edu	37	15	55652398	55652398	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	55652398	55652398	A	T	SNP	CCPG1	ENST00000310958	human	ensembl	74_37	-1	known	missense	c.1573	p.F525I	1.000	NULL	NULL	-	no_errors	CCPG1	HGNC	ENSG00000260916				191	0	0	141	17	10.7595
MIR628	0	genome.wustl.edu	37	15	55665215	55665215	+	RNA	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	55665215	55665215	A	G	SNP	MIR628	ENST00000385229	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MIR628	HGNC	ENSG00000207964				61	0	0	41	8	16.3265
PRTG	0	genome.wustl.edu	37	15	55971497	55971497	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	55971497	55971497	T	G	SNP	PRTG	ENST00000389286	human	ensembl	74_37	-1	known	missense	c.1120	p.K374Q	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	PRTG	HGNC	ENSG00000166450				86	0	0	42	4	8.69565
RFX7	0	genome.wustl.edu	37	15	56388470	56388470	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	56388470	56388470	T	C	SNP	RFX7	ENST00000423270	human	ensembl	74_37	-1	known	missense	c.1456	p.N486D	0.009	NULL	pfam_DNA-bd_RFX	-	no_errors	RFX7	HGNC	ENSG00000181827				71	0	0	61	4	6.15385
TEX9	0	genome.wustl.edu	37	15	56719831	56719831	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	56719831	56719831	T	A	SNP	TEX9	ENST00000352903	human	ensembl	74_37	+1	known	missense	c.992	p.I331N	1.000	NULL	NULL	-	no_errors	TEX9	HGNC	ENSG00000151575				128	0	0	85	9	9.57447
GCOM1	0	genome.wustl.edu	37	15	57925827	57925827	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	57925827	57925827	T	A	SNP	GCOM1	ENST00000380569	human	ensembl	74_37	+1	known	missense	c.821	p.F274Y	0.985	NULL	NULL	-	no_errors	GCOM1	HGNC	ENSG00000137878				94	0	0	86	12	12.2449
FAM81A	0	genome.wustl.edu	37	15	59752285	59752285	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	59752285	59752285	T	C	SNP	FAM81A	ENST00000288228	human	ensembl	74_37	+1	known	silent	c.174	p.I58	0.968	NULL	superfamily_Ferritin-like_SF	-	no_errors	FAM81A	HGNC	ENSG00000157470				100	0	0	90	6	6.25
NARG2	0	genome.wustl.edu	37	15	60741267	60741267	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	60741267	60741267	T	G	SNP	NARG2	ENST00000261520	human	ensembl	74_37	-1	known	missense	c.1899	p.K633N	1.000	NULL	pfam_NARG2_C	-	no_errors	NARG2	HGNC	ENSG00000128915				122	0	0	90	7	7.21649
VPS13C	0	genome.wustl.edu	37	15	62155653	62155653	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	62155653	62155653	A	G	SNP	VPS13C	ENST00000261517	human	ensembl	74_37	-1	known	silent	c.10938	p.L3646	0.316	NULL	pfam_VPSAP_dom,pfam_Autophagy-rel_C	-	no_errors	VPS13C	HGNC	ENSG00000129003				77	0	0	63	6	8.69565
VPS13C	0	genome.wustl.edu	37	15	62208153	62208153	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	62208153	62208153	A	G	SNP	VPS13C	ENST00000261517	human	ensembl	74_37	-1	known	silent	c.8124	p.G2708	0.683	NULL	pfam_VPSAP_dom,pfam_Autophagy-rel_C	-	no_errors	VPS13C	HGNC	ENSG00000129003				63	0	0	64	7	9.85915
VPS13C	0	genome.wustl.edu	37	15	62210431	62210431	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	62210431	62210431	A	G	SNP	VPS13C	ENST00000261517	human	ensembl	74_37	-1	known	missense	c.7664	p.F2555S	1.000	NULL	pfam_VPSAP_dom,pfam_Autophagy-rel_C	-	no_errors	VPS13C	HGNC	ENSG00000129003				113	0	0	85	8	8.60215
VPS13C	0	genome.wustl.edu	37	15	62251774	62251774	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	62251774	62251774	A	G	SNP	VPS13C	ENST00000261517	human	ensembl	74_37	-1	known	missense	c.3929	p.I1310T	0.000	NULL	pfam_VPSAP_dom,pfam_Autophagy-rel_C	-	no_errors	VPS13C	HGNC	ENSG00000129003				52	0	0	45	12	21.0526
VPS13C	0	genome.wustl.edu	37	15	62253854	62253854	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	62253854	62253854	T	C	SNP	VPS13C	ENST00000261517	human	ensembl	74_37	-1	known	missense	c.3842	p.E1281G	1.000	NULL	pfam_VPSAP_dom,pfam_Autophagy-rel_C	-	no_errors	VPS13C	HGNC	ENSG00000129003				97	0	0	77	7	8.33333
TLN2	0	genome.wustl.edu	37	15	62945511	62945511	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	62945511	62945511	A	T	SNP	TLN2	ENST00000306829	human	ensembl	74_37	+1	known	missense	c.515	p.D172V	1.000	pfam_FERM_N,smart_Band_41_domain,pfscan_FERM_domain	pfam_Talin_cent,pfam_ILWEQ_dom,pfam_Vinculin-bd_dom,pfam_FERM_N,pfam_FERM_central,pfam_Insln_rcpt_S1,superfamily_Talin_cent,superfamily_Vinculin/catenin,superfamily_FERM_central,smart_Band_41_domain,smart_ILWEQ_dom,pfscan_FERM_domain,pfscan_ILWEQ_dom	-	no_errors	TLN2	HGNC	ENSG00000171914				44	0	0	28	4	12.5
TLN2	0	genome.wustl.edu	37	15	63031735	63031735	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	63031735	63031735	C	T	SNP	TLN2	ENST00000306829	human	ensembl	74_37	+1	known	silent	c.3876	p.G1292	1.000	superfamily_Vinculin/catenin	pfam_Talin_cent,pfam_ILWEQ_dom,pfam_Vinculin-bd_dom,pfam_FERM_N,pfam_FERM_central,pfam_Insln_rcpt_S1,superfamily_Talin_cent,superfamily_Vinculin/catenin,superfamily_FERM_central,smart_Band_41_domain,smart_ILWEQ_dom,pfscan_FERM_domain,pfscan_ILWEQ_dom	-	no_errors	TLN2	HGNC	ENSG00000171914				62	0	0	51	5	8.92857
USP3	0	genome.wustl.edu	37	15	63862713	63862713	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	63862713	63862713	C	T	SNP	USP3	ENST00000559873	human	ensembl	74_37	+1	known	missense	c.173	p.T58M	0.998	NULL	NULL	-	no_errors	USP3	HGNC	ENSG00000140455				95	0	0	70	26	27.0833
HERC1	0	genome.wustl.edu	37	15	63904619	63904619	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	63904619	63904619	T	C	SNP	HERC1	ENST00000443617	human	ensembl	74_37	-1	known	missense	c.14231	p.Y4744C	1.000	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_Reg_chr_condens,pfam_HECT,pfam_WD40_repeat,pfam_SPRY_rcpt,superfamily_RCC1/BLIP-II,superfamily_HECT,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl_sf,superfamily_UBA-like,superfamily_ARM-type_fold,smart_SPla/RYanodine_receptor_subgr,smart_WD40_repeat,smart_HECT,pfscan_B30.2/SPRY,pfscan_HECT,pfscan_Reg_chr_condens,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Reg_chr_condens	-	no_errors	HERC1	HGNC	ENSG00000103657				91	0	0	69	10	12.6582
HERC1	0	genome.wustl.edu	37	15	63937702	63937702	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	63937702	63937702	C	T	SNP	HERC1	ENST00000443617	human	ensembl	74_37	-1	known	silent	c.11058	p.K3686	0.987	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_Reg_chr_condens,pfam_HECT,pfam_WD40_repeat,pfam_SPRY_rcpt,superfamily_RCC1/BLIP-II,superfamily_HECT,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl_sf,superfamily_UBA-like,superfamily_ARM-type_fold,smart_SPla/RYanodine_receptor_subgr,smart_WD40_repeat,smart_HECT,pfscan_B30.2/SPRY,pfscan_HECT,pfscan_Reg_chr_condens,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Reg_chr_condens	-	no_errors	HERC1	HGNC	ENSG00000103657				47	0	0	25	3	10.7143
HERC1	0	genome.wustl.edu	37	15	63950833	63950833	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	63950833	63950833	C	T	SNP	HERC1	ENST00000443617	human	ensembl	74_37	-1	known	missense	c.9509	p.R3170H	1.000	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_WD40_repeat,pfam_SPRY_rcpt,superfamily_RCC1/BLIP-II,superfamily_HECT,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl_sf,superfamily_UBA-like,superfamily_ARM-type_fold,smart_SPla/RYanodine_receptor_subgr,smart_WD40_repeat,smart_HECT,pfscan_B30.2/SPRY,pfscan_HECT,pfscan_Reg_chr_condens,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Reg_chr_condens	-	no_errors	HERC1	HGNC	ENSG00000103657				70	0	0	45	6	11.7647
HERC1	0	genome.wustl.edu	37	15	64011049	64011049	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	64011049	64011049	A	G	SNP	HERC1	ENST00000443617	human	ensembl	74_37	-1	known	missense	c.3790	p.S1264P	1.000	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_WD40_repeat,pfam_SPRY_rcpt,superfamily_RCC1/BLIP-II,superfamily_HECT,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl_sf,superfamily_UBA-like,superfamily_ARM-type_fold,smart_SPla/RYanodine_receptor_subgr,smart_WD40_repeat,smart_HECT,pfscan_B30.2/SPRY,pfscan_HECT,pfscan_Reg_chr_condens,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Reg_chr_condens	-	no_errors	HERC1	HGNC	ENSG00000103657				105	0	0	76	4	5
HERC1	0	genome.wustl.edu	37	15	64067600	64067600	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	64067600	64067600	G	A	SNP	HERC1	ENST00000443617	human	ensembl	74_37	-1	known	nonsense	c.223	p.Q75*	1.000	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_WD40_repeat,pfam_SPRY_rcpt,superfamily_RCC1/BLIP-II,superfamily_HECT,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl_sf,superfamily_UBA-like,superfamily_ARM-type_fold,smart_SPla/RYanodine_receptor_subgr,smart_WD40_repeat,smart_HECT,pfscan_B30.2/SPRY,pfscan_HECT,pfscan_Reg_chr_condens,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Reg_chr_condens	-	no_errors	HERC1	HGNC	ENSG00000103657				59	0	0	40	3	6.97674
ZNF609	0	genome.wustl.edu	37	15	64915123	64915123	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	64915123	64915123	T	C	SNP	ZNF609	ENST00000326648	human	ensembl	74_37	+1	known	missense	c.845	p.V282A	1.000	NULL	pfscan_Znf_C2H2	-	no_errors	ZNF609	HGNC	ENSG00000180357				125	0	0	143	12	7.74194
ZNF609	0	genome.wustl.edu	37	15	64973005	64973005	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	64973005	64973005	A	G	SNP	ZNF609	ENST00000326648	human	ensembl	74_37	+1	known	missense	c.4106	p.H1369R	1.000	NULL	pfscan_Znf_C2H2	-	no_errors	ZNF609	HGNC	ENSG00000180357				74	0	0	77	9	10.4651
RBPMS2	0	genome.wustl.edu	37	15	65041207	65041207	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	65041207	65041207	C	T	SNP	RBPMS2	ENST00000300069	human	ensembl	74_37	-1	known	missense	c.410	p.R137Q	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBPMS2	HGNC	ENSG00000166831				47	0	0	64	5	7.24638
PIF1	0	genome.wustl.edu	37	15	65111388	65111388	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	65111388	65111388	G	A	SNP	PIF1	ENST00000333425	human	ensembl	74_37	-1	known	silent	c.1368	p.N456	1.000	pfam_DNA_helicase_Pif1,superfamily_P-loop_NTPase	pfam_DNA_helicase_Pif1,pfam_DNA_helicase,superfamily_P-loop_NTPase	-	no_errors	PIF1	HGNC	ENSG00000140451				47	0	0	29	6	17.1429
PIF1	0	genome.wustl.edu	37	15	65112130	65112130	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	65112130	65112130	G	A	SNP	PIF1	ENST00000333425	human	ensembl	74_37	-1	known	nonsense	c.1249	p.R417*	1.000	pfam_DNA_helicase_Pif1,superfamily_P-loop_NTPase	pfam_DNA_helicase_Pif1,pfam_DNA_helicase,superfamily_P-loop_NTPase	-	no_errors	PIF1	HGNC	ENSG00000140451				81	0	0	84	8	8.69565
MTFMT	0	genome.wustl.edu	37	15	65308852	65308852	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	65308852	65308852	A	G	SNP	MTFMT	ENST00000220058	human	ensembl	74_37	-1	known	silent	c.735	p.S245	0.653	pfam_Formyl_trans_C,superfamily_Formyl_transferase_C-like,tigrfam_Fmt	pfam_Formyl_transf_N,pfam_Formyl_trans_C,superfamily_Formyl_transf_N,superfamily_Formyl_transferase_C-like,tigrfam_Fmt	-	no_errors	MTFMT	HGNC	ENSG00000103707				194	0	0	136	14	9.33333
DPP8	0	genome.wustl.edu	37	15	65746615	65746615	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	65746615	65746615	A	G	SNP	DPP8	ENST00000341861	human	ensembl	74_37	-1	known	missense	c.2305	p.S769P	1.000	pfam_Peptidase_S9,pfam_X-Pro-like_dom	pfam_Peptidase_S9B,pfam_Peptidase_S9,pfam_X-Pro-like_dom	-	no_errors	DPP8	HGNC	ENSG00000074603				100	0	0	69	7	9.21053
DENND4A	0	genome.wustl.edu	37	15	65956734	65956734	+	Splice_Site	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	65956734	65956734	T	C	SNP	DENND4A	ENST00000443035	human	ensembl	74_37	-1	known	splice_site	c.5520-2	e30-2	0.998	-	-	-	no_errors	DENND4A	HGNC	ENSG00000174485				56	0	0	43	5	10.4167
DENND4A	0	genome.wustl.edu	37	15	65983416	65983416	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	65983416	65983416	A	G	SNP	DENND4A	ENST00000443035	human	ensembl	74_37	-1	known	silent	c.3513	p.S1171	0.005	NULL	pfam_DENN_dom,pfam_dDENN_dom,pfam_uDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,tigrfam_Pentatricopeptide_repeat	-	no_errors	DENND4A	HGNC	ENSG00000174485				51	0	0	43	6	12.2449
RAB11A	0	genome.wustl.edu	37	15	66170134	66170134	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	66170134	66170134	T	C	SNP	RAB11A	ENST00000261890	human	ensembl	74_37	+1	known	missense	c.271	p.Y91H	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB11A	HGNC	ENSG00000103769				106	0	0	97	8	7.61905
SMAD6	0	genome.wustl.edu	37	15	67004041	67004041	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	67004041	67004041	C	T	SNP	SMAD6	ENST00000288840	human	ensembl	74_37	+1	known	missense	c.853	p.R285C	0.358	superfamily_SMAD_FHA_domain	pfam_SMAD_dom_Dwarfin-type,pfam_MAD_homology1_Dwarfin-type,superfamily_SMAD_FHA_domain,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,smart_SMAD_dom_Dwarfin-type,pfscan_MAD_homology_MH1,pfscan_SMAD_dom_Dwarfin-type	-	no_errors	SMAD6	HGNC	ENSG00000137834				72	0	0	81	8	8.98876
SMAD6	0	genome.wustl.edu	37	15	67004051	67004051	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	67004051	67004051	A	G	SNP	SMAD6	ENST00000288840	human	ensembl	74_37	+1	known	missense	c.863	p.Y288C	1.000	superfamily_SMAD_FHA_domain	pfam_SMAD_dom_Dwarfin-type,pfam_MAD_homology1_Dwarfin-type,superfamily_SMAD_FHA_domain,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,smart_SMAD_dom_Dwarfin-type,pfscan_MAD_homology_MH1,pfscan_SMAD_dom_Dwarfin-type	-	no_errors	SMAD6	HGNC	ENSG00000137834				70	0	0	70	8	10.2564
SMAD6	0	genome.wustl.edu	37	15	67073423	67073423	+	Nonsense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	67073423	67073423	T	A	SNP	SMAD6	ENST00000288840	human	ensembl	74_37	+1	known	nonsense	c.1041	p.Y347*	0.998	pfam_SMAD_dom_Dwarfin-type,superfamily_SMAD_FHA_domain,smart_SMAD_dom_Dwarfin-type,pfscan_SMAD_dom_Dwarfin-type	pfam_SMAD_dom_Dwarfin-type,pfam_MAD_homology1_Dwarfin-type,superfamily_SMAD_FHA_domain,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,smart_SMAD_dom_Dwarfin-type,pfscan_MAD_homology_MH1,pfscan_SMAD_dom_Dwarfin-type	-	no_errors	SMAD6	HGNC	ENSG00000137834				15	0	0	22	2	8.33333
SMAD3	0	genome.wustl.edu	37	15	67482849	67482849	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	67482849	67482849	G	A	SNP	SMAD3	ENST00000327367	human	ensembl	74_37	+1	known	missense	c.1253	p.S418N	1.000	pfscan_SMAD_dom_Dwarfin-type	pfam_SMAD_dom_Dwarfin-type,pfam_MAD_homology1_Dwarfin-type,pfam_Interferon_reg_factor-3,superfamily_SMAD_FHA_domain,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,smart_SMAD_dom_Dwarfin-type,pfscan_MAD_homology_MH1,pfscan_SMAD_dom_Dwarfin-type	-	no_errors	SMAD3	HGNC	ENSG00000166949				33	0	0	32	6	15.7895
IQCH	0	genome.wustl.edu	37	15	67692609	67692609	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	67692609	67692609	A	G	SNP	IQCH	ENST00000335894	human	ensembl	74_37	+1	known	missense	c.2063	p.Y688C	0.030	NULL	superfamily_P-loop_NTPase,pfscan_IQ_motif_EF-hand-BS	-	no_errors	IQCH	HGNC	ENSG00000103599				46	0	0	41	6	12.766
SKOR1	0	genome.wustl.edu	37	15	68118726	68118726	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	68118726	68118726	G	T	SNP	SKOR1	ENST00000380035	human	ensembl	74_37	+1	known	missense	c.560	p.C187F	1.000	pfam_c-SKI_SMAD4-bd_dom,superfamily_SAND_dom-like	pfam_Transform_Ski,pfam_c-SKI_SMAD4-bd_dom,superfamily_DNA-bd_dom_put,superfamily_SAND_dom-like	-	no_errors	SKOR1	HGNC	ENSG00000188779				74	0	0	70	10	12.5
PIAS1	0	genome.wustl.edu	37	15	68378712	68378712	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	68378712	68378712	C	T	SNP	PIAS1	ENST00000249636	human	ensembl	74_37	+1	known	silent	c.93	p.H31	1.000	smart_SAP_dom,pfscan_SAP_dom	pfam_Znf_MIZ,smart_SAP_dom,pfscan_Znf_MIZ,pfscan_SAP_dom	-	no_errors	PIAS1	HGNC	ENSG00000033800				38	0	0	25	2	7.40741
PIAS1	0	genome.wustl.edu	37	15	68438930	68438930	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	68438930	68438930	C	T	SNP	PIAS1	ENST00000249636	human	ensembl	74_37	+1	known	silent	c.720	p.G240	1.000	NULL	pfam_Znf_MIZ,smart_SAP_dom,pfscan_Znf_MIZ,pfscan_SAP_dom	-	no_errors	PIAS1	HGNC	ENSG00000033800				122	0	0	84	8	8.69565
ITGA11	0	genome.wustl.edu	37	15	68608055	68608055	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	68608055	68608055	C	T	SNP	ITGA11	ENST00000315757	human	ensembl	74_37	-1	known	missense	c.2726	p.R909H	1.000	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGA11	HGNC	ENSG00000137809				15	0	0	10	6	37.5
GLCE	0	genome.wustl.edu	37	15	69548299	69548299	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	69548299	69548299	T	C	SNP	GLCE	ENST00000261858	human	ensembl	74_37	+1	known	missense	c.154	p.F52L	0.761	NULL	pfam_C5-epim	-	no_errors	GLCE	HGNC	ENSG00000138604				65	0	0	58	12	17.1429
KIF23	0	genome.wustl.edu	37	15	69737152	69737152	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	69737152	69737152	C	T	SNP	KIF23	ENST00000260363	human	ensembl	74_37	+1	known	silent	c.2403	p.N801	0.692	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF23	HGNC	ENSG00000137807				79	0	0	62	6	8.82353
RPLP1	0	genome.wustl.edu	37	15	69747800	69747800	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	69747800	69747800	A	G	SNP	RPLP1	ENST00000260379	human	ensembl	74_37	+1	known	missense	c.299	p.E100G	1.000	pfam_Ribosomal_L10/L12	pfam_Ribosomal_L10/L12	-	no_errors	RPLP1	HGNC	ENSG00000137818				41	0	0	34	4	10.5263
LRRC49	0	genome.wustl.edu	37	15	71196973	71196973	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	71196973	71196973	A	T	SNP	LRRC49	ENST00000260382	human	ensembl	74_37	+1	known	missense	c.379	p.I127L	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC49	HGNC	ENSG00000137821				126	0	0	80	9	10.1124
THSD4	0	genome.wustl.edu	37	15	72050275	72050275	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	72050275	72050275	G	A	SNP	THSD4	ENST00000261862	human	ensembl	74_37	+1	known	missense	c.2450	p.R817H	1.000	superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD4	HGNC	ENSG00000187720				52	0	0	47	11	18.9655
GRAMD2	0	genome.wustl.edu	37	15	72455965	72455965	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	72455965	72455965	G	A	SNP	GRAMD2	ENST00000309731	human	ensembl	74_37	-1	known	missense	c.734	p.P245L	0.942	NULL	pfam_GRAM,smart_GRAM	-	no_errors	GRAMD2	HGNC	ENSG00000175318				38	0	0	40	5	11.1111
PARP6	0	genome.wustl.edu	37	15	72552962	72552962	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	72552962	72552962	C	T	SNP	PARP6	ENST00000287196	human	ensembl	74_37	-1	known	missense	c.613	p.V205I	1.000	NULL	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP6	HGNC	ENSG00000137817				492	1	0.20284	448	37	7.62887
CELF6	0	genome.wustl.edu	37	15	72580706	72580706	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	72580706	72580706	C	A	SNP	CELF6	ENST00000569547	human	ensembl	74_37	-1	known	missense	c.1261	p.A421S	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CELF6	Uniprot_gn	ENSG00000273025				178	0	0	164	12	6.81818
NEO1	0	genome.wustl.edu	37	15	73542047	73542047	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	73542047	73542047	C	T	SNP	NEO1	ENST00000261908	human	ensembl	74_37	+1	known	nonsense	c.1879	p.R627*	1.000	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Neogenin_C,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	NEO1	HGNC	ENSG00000067141				169	0	0	132	12	8.33333
NEO1	0	genome.wustl.edu	37	15	73547093	73547093	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	73547093	73547093	G	A	SNP	NEO1	ENST00000261908	human	ensembl	74_37	+1	known	missense	c.2015	p.R672H	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Neogenin_C,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	NEO1	HGNC	ENSG00000067141				218	0	0	120	49	28.9941
NEO1	0	genome.wustl.edu	37	15	73575319	73575319	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	73575319	73575319	C	T	SNP	NEO1	ENST00000261908	human	ensembl	74_37	+1	known	missense	c.3277	p.H1093Y	1.000	pfam_Neogenin_C	pfam_Neogenin_C,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	NEO1	HGNC	ENSG00000067141				382	0	0	341	24	6.57534
HCN4	0	genome.wustl.edu	37	15	73635998	73635998	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	73635998	73635998	T	C	SNP	HCN4	ENST00000261917	human	ensembl	74_37	-1	known	missense	c.937	p.N313D	1.000	pfam_Ion_trans_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG	pfam_Ion_trans_N,pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,pfscan_cNMP-bd_dom	-	no_errors	HCN4	HGNC	ENSG00000138622				44	0	0	53	5	8.62069
CD276	0	genome.wustl.edu	37	15	73994658	73994658	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	73994658	73994658	C	A	SNP	CD276	ENST00000318443	human	ensembl	74_37	+1	known	missense	c.142	p.L48M	1.000	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_CD80_C2-set,pfam_Ig_C1-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	CD276	HGNC	ENSG00000103855				25	0	0	25	8	24.2424
PML	0	genome.wustl.edu	37	15	74315214	74315214	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	74315214	74315214	G	A	SNP	PML	ENST00000268058	human	ensembl	74_37	+1	known	silent	c.648	p.A216	0.818	pfscan_Znf_B-box	pfam_DUF3583,pfam_Znf_B-box,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	PML	HGNC	ENSG00000140464				27	0	0	18	3	14.2857
PML	0	genome.wustl.edu	37	15	74315245	74315245	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	74315245	74315245	T	C	SNP	PML	ENST00000268058	human	ensembl	74_37	+1	known	missense	c.679	p.C227R	0.761	NULL	pfam_DUF3583,pfam_Znf_B-box,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	PML	HGNC	ENSG00000140464				28	0	0	16	2	11.1111
ISLR2	0	genome.wustl.edu	37	15	74427037	74427037	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	74427037	74427037	C	T	SNP	ISLR2	ENST00000361742	human	ensembl	74_37	+1	known	missense	c.1942	p.R648C	1.000	NULL	pfam_Leu-rich_rpt,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_Ig-like_dom	-	no_errors	ISLR2	HGNC	ENSG00000167178				50	0	0	66	5	7.04225
ISLR2	0	genome.wustl.edu	37	15	74427273	74427273	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	74427273	74427273	C	T	SNP	ISLR2	ENST00000361742	human	ensembl	74_37	+1	known	silent	c.2178	p.G726	0.098	NULL	pfam_Leu-rich_rpt,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_Ig-like_dom	-	no_errors	ISLR2	HGNC	ENSG00000167178				66	0	0	65	4	5.7971
CCDC33	0	genome.wustl.edu	37	15	74565210	74565210	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	74565210	74565210	T	C	SNP	CCDC33	ENST00000321288	human	ensembl	74_37	+1	known	missense	c.1346	p.V449A	0.165	NULL	pfam_C2_dom,superfamily_C2_dom	-	no_errors	CCDC33	HGNC	ENSG00000140481				111	0	0	100	11	9.90991
SEMA7A	0	genome.wustl.edu	37	15	74708178	74708178	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	74708178	74708178	C	A	SNP	SEMA7A	ENST00000261918	human	ensembl	74_37	-1	known	missense	c.950	p.R317M	0.209	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,pfscan_Semap_dom,pfscan_Ig-like_dom	-	no_errors	SEMA7A	HGNC	ENSG00000138623				37	0	0	52	4	7.14286
UBL7	0	genome.wustl.edu	37	15	74741564	74741564	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	74741564	74741564	G	A	SNP	UBL7	ENST00000361351	human	ensembl	74_37	-1	known	missense	c.845	p.P282L	0.998	NULL	pfam_Ubiquitin_dom,pfam_UBA/Ts_N,superfamily_UBA-like,smart_Ubiquitin_dom,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Ubiquitin_supergroup	-	no_errors	UBL7	HGNC	ENSG00000138629				68	0	0	53	6	10.1695
ARID3B	0	genome.wustl.edu	37	15	74888103	74888103	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	74888103	74888103	C	A	SNP	ARID3B	ENST00000346246	human	ensembl	74_37	+1	known	missense	c.1671	p.S557R	1.000	NULL	pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID3B	HGNC	ENSG00000179361				55	0	0	45	4	8.16327
LMAN1L	0	genome.wustl.edu	37	15	75117871	75117871	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	75117871	75117871	G	A	SNP	LMAN1L	ENST00000309664	human	ensembl	74_37	+1	known	silent	c.1506	p.L502	0.002	NULL	pfam_Lectin_leg,superfamily_ConA-like_lec_gl_sf	-	no_errors	LMAN1L	HGNC	ENSG00000140506				150	0	0	127	40	23.9521
NEIL1	0	genome.wustl.edu	37	15	75646609	75646609	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	75646609	75646609	G	A	SNP	NEIL1	ENST00000355059	human	ensembl	74_37	+1	known	missense	c.865	p.A289T	1.000	pfam_Endonuclease-VIII_DNA-bd	pfam_Endonuclease-VIII_DNA-bd,pfam_DNA_glycosylase/AP_lyase_cat,pfam_DNA_glyclase/AP_lyase_DNA-bd,superfamily_DNA_glycosylase/AP_lyase_cat,superfamily_Ribosomal_S13-like_H2TH,smart_DNA_glycosylase/AP_lyase_cat,pfscan_DNA_glycosylase/AP_lyase_cat	-	no_errors	NEIL1	HGNC	ENSG00000140398				78	0	0	90	10	10
MAN2C1	0	genome.wustl.edu	37	15	75648486	75648486	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	75648486	75648486	C	T	SNP	MAN2C1	ENST00000267978	human	ensembl	74_37	-1	known	nonsense	c.2961	p.W987*	1.000	pfam_Glyco_hydro_38_C,superfamily_Gal_mutarotase_SF_dom	pfam_Glyco_hydro_38_N,pfam_Glyco_hydro_38_C,pfam_Glyco_hydro_38_cen_dom,superfamily_Gal_mutarotase_SF_dom,superfamily_Glyco_hydro/deAcase_b/a-brl,smart_Glyco_hydro_38_cen_dom	-	no_errors	MAN2C1	HGNC	ENSG00000140400				31	0	0	30	3	9.09091
CSPG4	0	genome.wustl.edu	37	15	75969124	75969124	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	75969124	75969124	G	A	SNP	CSPG4	ENST00000308508	human	ensembl	74_37	-1	known	silent	c.5736	p.S1912	0.033	NULL	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	-	no_errors	CSPG4	HGNC	ENSG00000173546				43	0	0	58	5	7.93651
TSPAN3	0	genome.wustl.edu	37	15	77348527	77348527	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	77348527	77348527	A	G	SNP	TSPAN3	ENST00000267970	human	ensembl	74_37	-1	known	missense	c.134	p.F45S	1.000	pfam_Tetraspanin/Peripherin	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	TSPAN3	HGNC	ENSG00000140391				145	0	0	129	32	19.8758
ENSG00000261244	0	genome.wustl.edu	37	15	78208916	78208916	+	RNA	SNP	C	C	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	78208916	78208916	C	G	SNP	ENSG00000261244	ENST00000565869	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.569	-	-	-	no_errors	RP11-114H24.7	Clone_based_vega_gene	ENSG00000261244				74	0	0	66	4	5.71429
CIB2	0	genome.wustl.edu	37	15	78398176	78398176	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	78398176	78398176	G	A	SNP	CIB2	ENST00000258930	human	ensembl	74_37	-1	known	silent	c.447	p.C149	0.786	smart_EF_hand_dom,pfscan_EF_hand_dom	smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	CIB2	HGNC	ENSG00000136425				61	0	0	69	5	6.75676
IREB2	0	genome.wustl.edu	37	15	78732142	78732142	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	78732142	78732142	G	A	SNP	IREB2	ENST00000258886	human	ensembl	74_37	+1	known	missense	c.25	p.A9T	0.053	superfamily_Acoase/IPM_deHydtase_lsu_aba	pfam_Acoase/IPM_deHydtase_lsu_aba,pfam_AconitaseA/IPMdHydase_ssu_swvl,superfamily_Acoase/IPM_deHydtase_lsu_aba,superfamily_Aconitase/3IPM_dehydase_swvl,prints_Acoase/IPM_deHydtase_lsu_aba,tigrfam_Aconitase/Fe_reg_prot_2	-	no_errors	IREB2	HGNC	ENSG00000136381				56	0	0	30	6	16.6667
PSMA4	0	genome.wustl.edu	37	15	78834954	78834954	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	78834954	78834954	T	C	SNP	PSMA4	ENST00000044462	human	ensembl	74_37	+1	known	missense	c.176	p.V59A	1.000	pfam_Proteasome_sua/b	pfam_Proteasome_sua/b,pfam_Proteasome_asu_N,smart_Proteasome_asu_N	-	no_errors	PSMA4	HGNC	ENSG00000041357				222	0	0	144	21	12.7273
PSMA4	0	genome.wustl.edu	37	15	78841185	78841185	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	78841185	78841185	A	G	SNP	PSMA4	ENST00000044462	human	ensembl	74_37	+1	known	missense	c.685	p.K229E	1.000	NULL	pfam_Proteasome_sua/b,pfam_Proteasome_asu_N,smart_Proteasome_asu_N	-	no_errors	PSMA4	HGNC	ENSG00000041357				99	0	0	55	20	26.6667
CHRNB4	0	genome.wustl.edu	37	15	78922159	78922159	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	78922159	78922159	T	C	SNP	CHRNB4	ENST00000261751	human	ensembl	74_37	-1	known	missense	c.488	p.D163G	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,prints_Neur_channel,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNB4	HGNC	ENSG00000117971				65	0	0	50	18	26.4706
RASGRF1	0	genome.wustl.edu	37	15	79288103	79288103	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	79288103	79288103	C	T	SNP	RASGRF1	ENST00000419573	human	ensembl	74_37	-1	known	silent	c.3054	p.T1018	0.181	superfamily_Ras_GEF_dom	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_Ras_GEF_dom,superfamily_DH-domain,smart_Pleckstrin_homology,smart_DH-domain,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_DH-domain,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGRF1	HGNC	ENSG00000058335				83	0	0	84	5	5.61798
KIAA1024	0	genome.wustl.edu	37	15	79748674	79748674	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	79748674	79748674	C	T	SNP	KIAA1024	ENST00000305428	human	ensembl	74_37	+1	known	missense	c.185	p.A62V	1.000	NULL	pfam_UPF0258	-	no_errors	KIAA1024	HGNC	ENSG00000169330				112	0	0	94	9	8.73786
KIAA1024	0	genome.wustl.edu	37	15	79749496	79749496	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	79749496	79749496	C	T	SNP	KIAA1024	ENST00000305428	human	ensembl	74_37	+1	known	missense	c.1007	p.A336V	1.000	NULL	pfam_UPF0258	-	no_errors	KIAA1024	HGNC	ENSG00000169330				106	0	0	112	10	8.19672
BCL2A1	0	genome.wustl.edu	37	15	80263396	80263396	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	80263396	80263396	C	T	SNP	BCL2A1	ENST00000267953	human	ensembl	74_37	-1	known	silent	c.66	p.Q22	0.424	NULL	pfam_Blc2_fam,pfscan_Bcl2-like,prints_Bcl2A1,prints_Blc2_fam	-	no_errors	BCL2A1	HGNC	ENSG00000140379				94	0	0	91	7	7.14286
TMC3	0	genome.wustl.edu	37	15	81650613	81650613	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	81650613	81650613	A	G	SNP	TMC3	ENST00000359440	human	ensembl	74_37	-1	known	missense	c.620	p.V207A	0.995	NULL	pfam_TMC	-	no_errors	TMC3	HGNC	ENSG00000188869				147	0	0	131	11	7.74648
MEX3B	0	genome.wustl.edu	37	15	82336468	82336468	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	82336468	82336468	A	G	SNP	MEX3B	ENST00000329713	human	ensembl	74_37	-1	known	missense	c.743	p.V248A	1.000	NULL	pfam_KH_dom_type_1,smart_KH_dom,smart_Znf_RING,pfscan_Znf_RING,pfscan_KH_dom_type_1	-	no_errors	MEX3B	HGNC	ENSG00000183496				118	0	0	95	11	10.3774
FAM154B	0	genome.wustl.edu	37	15	82575356	82575356	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	82575356	82575356	G	A	SNP	FAM154B	ENST00000339465	human	ensembl	74_37	+1	known	missense	c.1150	p.G384S	0.999	NULL	NULL	-	no_errors	FAM154B	HGNC	ENSG00000188659				71	0	0	45	8	15.0943
CPEB1	0	genome.wustl.edu	37	15	83240228	83240228	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	83240228	83240228	G	A	SNP	CPEB1	ENST00000562019	human	ensembl	74_37	-1	known	missense	c.245	p.A82V	1.000	NULL	pfscan_RRM_dom	-	no_errors	CPEB1	HGNC	ENSG00000214575				161	1	0.617284	140	10	6.66667
FSD2	0	genome.wustl.edu	37	15	83456128	83456128	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	83456128	83456128	C	T	SNP	FSD2	ENST00000334574	human	ensembl	74_37	-1	known	silent	c.15	p.S5	0.000	NULL	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,prints_Butyrophylin	-	no_errors	FSD2	HGNC	ENSG00000186628				119	0	0	104	8	7.14286
WHAMM	0	genome.wustl.edu	37	15	83481966	83481966	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	83481966	83481966	T	C	SNP	WHAMM	ENST00000286760	human	ensembl	74_37	+1	known	missense	c.721	p.Y241H	1.000	NULL	superfamily_tRNA-bd_arm,pfscan_WH2_dom	-	no_errors	WHAMM	HGNC	ENSG00000156232				48	0	0	27	3	10
C15orf40	0	genome.wustl.edu	37	15	83677350	83677350	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	83677350	83677350	A	T	SNP	C15orf40	ENST00000451195	human	ensembl	74_37	-1	known	missense	c.316	p.Y106N	0.957	pfam_DUF167,superfamily_DUF167	pfam_DUF167,superfamily_DUF167	-	no_errors	C15orf40	HGNC	ENSG00000169609				113	0	0	96	9	8.57143
TM6SF1	0	genome.wustl.edu	37	15	83805252	83805252	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	83805252	83805252	G	A	SNP	TM6SF1	ENST00000379386	human	ensembl	74_37	+1	known	missense	c.950	p.G317D	1.000	pfam_Transmembrane_6/97	pfam_Transmembrane_6/97	-	no_errors	TM6SF1	HGNC	ENSG00000136404				130	0	0	96	8	7.69231
BNC1	0	genome.wustl.edu	37	15	83931934	83931934	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	83931934	83931934	C	A	SNP	BNC1	ENST00000345382	human	ensembl	74_37	-1	known	missense	c.2069	p.R690M	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	BNC1	HGNC	ENSG00000169594				118	0	0	78	10	11.3636
BNC1	0	genome.wustl.edu	37	15	83932495	83932495	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	83932495	83932495	T	G	SNP	BNC1	ENST00000345382	human	ensembl	74_37	-1	known	missense	c.1508	p.N503T	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	BNC1	HGNC	ENSG00000169594				81	0	0	71	5	6.57895
ZSCAN2	0	genome.wustl.edu	37	15	85164124	85164124	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	85164124	85164124	G	A	SNP	ZSCAN2	ENST00000448803	human	ensembl	74_37	+1	known	missense	c.698	p.R233Q	0.998	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN2	HGNC	ENSG00000176371				96	0	0	99	8	7.47664
ZNF592	0	genome.wustl.edu	37	15	85327807	85327807	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	85327807	85327807	G	A	SNP	ZNF592	ENST00000299927	human	ensembl	74_37	+1	known	missense	c.1901	p.R634Q	0.988	smart_Znf_C2H2-like	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF592	HGNC	ENSG00000166716				75	0	0	61	5	7.57576
ALPK3	0	genome.wustl.edu	37	15	85383526	85383526	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	85383526	85383526	G	A	SNP	ALPK3	ENST00000258888	human	ensembl	74_37	+1	known	missense	c.1622	p.R541H	0.001	NULL	pfam_MHCK_EF2_kinase,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase,pfscan_Ig-like_dom	-	no_errors	ALPK3	HGNC	ENSG00000136383				45	0	0	36	10	21.7391
ALPK3	0	genome.wustl.edu	37	15	85383680	85383680	+	Silent	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	85383680	85383680	C	A	SNP	ALPK3	ENST00000258888	human	ensembl	74_37	+1	known	silent	c.1776	p.A592	0.032	NULL	pfam_MHCK_EF2_kinase,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase,pfscan_Ig-like_dom	-	no_errors	ALPK3	HGNC	ENSG00000136383				27	0	0	19	11	36.6667
ALPK3	0	genome.wustl.edu	37	15	85399886	85399886	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	85399886	85399886	G	A	SNP	ALPK3	ENST00000258888	human	ensembl	74_37	+1	known	silent	c.2523	p.T841	0.002	NULL	pfam_MHCK_EF2_kinase,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase,pfscan_Ig-like_dom	-	no_errors	ALPK3	HGNC	ENSG00000136383				52	0	0	33	13	28.2609
AKAP13	0	genome.wustl.edu	37	15	86122596	86122596	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	86122596	86122596	C	T	SNP	AKAP13	ENST00000361243	human	ensembl	74_37	+1	known	missense	c.1297	p.P433S	0.000	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_Ankyrin_rpt-contain_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain	-	no_errors	AKAP13	HGNC	ENSG00000170776				110	0	0	76	8	9.52381
AGBL1	0	genome.wustl.edu	37	15	86697774	86697774	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	86697774	86697774	C	T	SNP	AGBL1	ENST00000441037	human	ensembl	74_37	+1	known	missense	c.238	p.R80C	1.000	superfamily_ARM-type_fold	pfam_Peptidase_M14,superfamily_ARM-type_fold	-	no_errors	AGBL1	HGNC	ENSG00000166748				52	0	0	32	4	11.1111
AGBL1	0	genome.wustl.edu	37	15	86790986	86790986	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	86790986	86790986	C	A	SNP	AGBL1	ENST00000441037	human	ensembl	74_37	+1	known	missense	c.473	p.A158D	0.025	superfamily_ARM-type_fold	pfam_Peptidase_M14,superfamily_ARM-type_fold	-	no_errors	AGBL1	HGNC	ENSG00000166748				30	0	0	37	12	24.4898
NTRK3	0	genome.wustl.edu	37	15	88678533	88678533	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	88678533	88678533	A	G	SNP	NTRK3	ENST00000360948	human	ensembl	74_37	-1	known	missense	c.1003	p.W335R	1.000	pfam_Ig_I-set	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_LRR-contain_N,superfamily_Kinase-like_dom,smart_LRR-contain_N,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_Tyr_kinase_NGF_rcpt,prints_Tyr_kin_neurotrophic_rcpt_3,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NTRK3	HGNC	ENSG00000140538				93	0	0	77	10	11.4943
NTRK3	0	genome.wustl.edu	37	15	88726694	88726694	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	88726694	88726694	C	G	SNP	NTRK3	ENST00000360948	human	ensembl	74_37	-1	known	missense	c.350	p.S117T	1.000	prints_Tyr_kinase_NGF_rcpt	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_LRR-contain_N,superfamily_Kinase-like_dom,smart_LRR-contain_N,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_Tyr_kinase_NGF_rcpt,prints_Tyr_kin_neurotrophic_rcpt_3,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NTRK3	HGNC	ENSG00000140538				168	0	0	159	11	6.47059
AEN	0	genome.wustl.edu	37	15	89169940	89169940	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	89169940	89169940	A	G	SNP	AEN	ENST00000379231	human	ensembl	74_37	+1	known	missense	c.500	p.H167R	1.000	pfam_Exonuclease_RNaseT/DNA_pol3,superfamily_RNaseH-like_dom,smart_Exonuclease	pfam_Exonuclease_RNaseT/DNA_pol3,superfamily_RNaseH-like_dom,smart_Exonuclease	-	no_errors	AEN	HGNC	ENSG00000181026				56	0	0	61	4	6.15385
POLG	0	genome.wustl.edu	37	15	89864450	89864450	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	89864450	89864450	G	A	SNP	POLG	ENST00000268124	human	ensembl	74_37	-1	known	silent	c.2640	p.A880	0.869	pirsf_DNA-dir_DNA_pol_A_mt_sub,pfam_DNA-dir_DNA_pol_A_palm_dom,smart_DNA-dir_DNA_pol_A_palm_dom	pirsf_DNA-dir_DNA_pol_A_mt_sub,pfam_DNA-dir_DNA_pol_A_palm_dom,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_A_palm_dom,prints_DNA-dir_DNA_pol_A_mt	-	no_errors	POLG	HGNC	ENSG00000140521				43	0	0	54	17	23.9437
POLG	0	genome.wustl.edu	37	15	89871936	89871936	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	89871936	89871936	C	T	SNP	POLG	ENST00000268124	human	ensembl	74_37	-1	known	missense	c.1150	p.D384N	1.000	pirsf_DNA-dir_DNA_pol_A_mt_sub,superfamily_RNaseH-like_dom	pirsf_DNA-dir_DNA_pol_A_mt_sub,pfam_DNA-dir_DNA_pol_A_palm_dom,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_A_palm_dom,prints_DNA-dir_DNA_pol_A_mt	-	no_errors	POLG	HGNC	ENSG00000140521				140	0	0	156	11	6.58683
WDR93	0	genome.wustl.edu	37	15	90276280	90276280	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	90276280	90276280	C	T	SNP	WDR93	ENST00000268130	human	ensembl	74_37	+1	known	silent	c.1374	p.C458	0.981	superfamily_WD40_repeat_dom	superfamily_WD40_repeat_dom	-	no_errors	WDR93	HGNC	ENSG00000140527				178	0	0	171	15	8.06452
ANPEP	0	genome.wustl.edu	37	15	90344794	90344794	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	90344794	90344794	G	A	SNP	ANPEP	ENST00000300060	human	ensembl	74_37	-1	known	silent	c.1614	p.D538	0.008	NULL	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	ANPEP	HGNC	ENSG00000166825				44	0	0	45	12	21.0526
ANPEP	0	genome.wustl.edu	37	15	90349552	90349552	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	90349552	90349552	G	A	SNP	ANPEP	ENST00000300060	human	ensembl	74_37	-1	known	missense	c.263	p.T88M	0.001	pfam_Peptidase_M1_N	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	ANPEP	HGNC	ENSG00000166825				72	0	0	59	10	14.4928
TTLL13	0	genome.wustl.edu	37	15	90802126	90802126	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	90802126	90802126	T	C	SNP	TTLL13	ENST00000438251	human	ensembl	74_37	+1	known	missense	c.1319	p.L440P	1.000	NULL	pfam_TTL/TTLL_fam	-	no_errors	TTLL13	HGNC	ENSG00000213471				111	0	0	84	13	13.4021
ZNF774	0	genome.wustl.edu	37	15	90902116	90902116	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	90902116	90902116	G	A	SNP	ZNF774	ENST00000354377	human	ensembl	74_37	+1	known	silent	c.138	p.E46	0.998	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF774	HGNC	ENSG00000196391				54	0	0	38	6	13.6364
BLM	0	genome.wustl.edu	37	15	91292795	91292795	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	91292795	91292795	A	G	SNP	BLM	ENST00000355112	human	ensembl	74_37	+1	known	silent	c.297	p.T99	0.000	NULL	pfam_RQC_domain,pfam_BDHCT,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_HRDC_dom,superfamily_P-loop_NTPase,superfamily_HRDC-like,smart_Helicase_ATP-bd,smart_Helicase_C,smart_RQC_domain,smart_HRDC_dom,pfscan_HRDC_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ	-	no_errors	BLM	HGNC	ENSG00000197299				62	0	0	69	6	8
BLM	0	genome.wustl.edu	37	15	91293254	91293254	+	Silent	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	91293254	91293254	T	G	SNP	BLM	ENST00000355112	human	ensembl	74_37	+1	known	silent	c.756	p.A252	0.649	NULL	pfam_RQC_domain,pfam_BDHCT,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_HRDC_dom,superfamily_P-loop_NTPase,superfamily_HRDC-like,smart_Helicase_ATP-bd,smart_Helicase_C,smart_RQC_domain,smart_HRDC_dom,pfscan_HRDC_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ	-	no_errors	BLM	HGNC	ENSG00000197299				80	0	0	61	4	6.15385
FES	0	genome.wustl.edu	37	15	91430451	91430451	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	91430451	91430451	G	A	SNP	FES	ENST00000328850	human	ensembl	74_37	+1	known	silent	c.519	p.V173	0.594	pirsf_Tyr_kinase_non-rcpt_Fes_subgr	pirsf_Tyr_kinase_non-rcpt_Fes_subgr,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_FCH_dom,superfamily_Kinase-like_dom,superfamily_t-SNARE,smart_FCH_dom,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,pfscan_FCH_dom,pfscan_SH2,pfscan_Prot_kinase_dom	-	no_errors	FES	HGNC	ENSG00000182511				79	0	0	77	22	22.2222
FES	0	genome.wustl.edu	37	15	91436381	91436381	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	91436381	91436381	C	T	SNP	FES	ENST00000328850	human	ensembl	74_37	+1	known	silent	c.1878	p.C626	1.000	pirsf_Tyr_kinase_non-rcpt_Fes_subgr,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Tyr_kinase_non-rcpt_Fes_subgr,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_FCH_dom,superfamily_Kinase-like_dom,superfamily_t-SNARE,smart_FCH_dom,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,pfscan_FCH_dom,pfscan_SH2,pfscan_Prot_kinase_dom	-	no_errors	FES	HGNC	ENSG00000182511				22	0	0	15	4	21.0526
FES	0	genome.wustl.edu	37	15	91436956	91436956	+	Silent	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	91436956	91436956	A	T	SNP	FES	ENST00000328850	human	ensembl	74_37	+1	known	silent	c.2118	p.R706	0.997	pirsf_Tyr_kinase_non-rcpt_Fes_subgr,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Tyr_kinase_non-rcpt_Fes_subgr,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_FCH_dom,superfamily_Kinase-like_dom,superfamily_t-SNARE,smart_FCH_dom,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,pfscan_FCH_dom,pfscan_SH2,pfscan_Prot_kinase_dom	-	no_errors	FES	HGNC	ENSG00000182511				90	0	0	84	9	9.67742
MAN2A2	0	genome.wustl.edu	37	15	91456571	91456571	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	91456571	91456571	G	A	SNP	MAN2A2	ENST00000360468	human	ensembl	74_37	+1	known	missense	c.2653	p.A885T	1.000	pfam_Glyco_hydro_38_C,superfamily_Gal_mutarotase_SF_dom	pfam_Glyco_hydro_38_N,pfam_Glyco_hydro_38_C,pfam_Glyco_hydro_38_cen_dom,superfamily_Gal_mutarotase_SF_dom,superfamily_Glyco_hydro/deAcase_b/a-brl,smart_Glyco_hydro_38_cen_dom	-	no_errors	MAN2A2	HGNC	ENSG00000196547				56	0	0	62	9	12.6761
UNC45A	0	genome.wustl.edu	37	15	91491946	91491946	+	Nonsense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	91491946	91491946	T	A	SNP	UNC45A	ENST00000418476	human	ensembl	74_37	+1	known	nonsense	c.1800	p.Y600*	0.060	superfamily_ARM-type_fold	pfam_UNC-45/Ring3,superfamily_ARM-type_fold,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	UNC45A	HGNC	ENSG00000140553				43	0	0	48	3	5.88235
UNC45A	0	genome.wustl.edu	37	15	91496278	91496278	+	Splice_Site	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	91496278	91496278	T	C	SNP	UNC45A	ENST00000418476	human	ensembl	74_37	+1	known	splice_site	c.2421+2	e18+2	1.000	-	-	-	no_errors	UNC45A	HGNC	ENSG00000140553				50	0	0	58	5	7.93651
RCCD1	0	genome.wustl.edu	37	15	91504966	91504966	+	Silent	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	91504966	91504966	C	A	SNP	RCCD1	ENST00000394258	human	ensembl	74_37	+1	known	silent	c.1098	p.T366	0.953	pfam_Reg_chr_condens,superfamily_RCC1/BLIP-II,pfscan_Reg_chr_condens	pfam_Reg_chr_condens,superfamily_RCC1/BLIP-II,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	RCCD1	HGNC	ENSG00000166965				112	1	0.884956	86	19	18.0952
SV2B	0	genome.wustl.edu	37	15	91769874	91769874	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	91769874	91769874	C	T	SNP	SV2B	ENST00000330276	human	ensembl	74_37	+1	known	silent	c.381	p.F127	0.937	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_SV2	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_SV2	-	no_errors	SV2B	HGNC	ENSG00000185518				77	0	0	64	4	5.88235
ST8SIA2	0	genome.wustl.edu	37	15	92981597	92981597	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	92981597	92981597	A	G	SNP	ST8SIA2	ENST00000268164	human	ensembl	74_37	+1	known	missense	c.305	p.K102R	1.000	pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST8SIA2	HGNC	ENSG00000140557				237	0	0	226	16	6.61157
C15orf32	0	genome.wustl.edu	37	15	93015547	93015547	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	93015547	93015547	A	T	SNP	C15orf32	ENST00000333334	human	ensembl	74_37	+1	known	missense	c.169	p.M57L	0.000	NULL	NULL	-	no_errors	C15orf32	HGNC	ENSG00000183643				118	0	0	125	11	8.08824
C15orf32	0	genome.wustl.edu	37	15	93015736	93015736	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	93015736	93015736	A	G	SNP	C15orf32	ENST00000333334	human	ensembl	74_37	+1	known	missense	c.358	p.N120D	0.000	NULL	NULL	-	no_errors	C15orf32	HGNC	ENSG00000183643				112	0	0	96	7	6.79612
ENSG00000258741	0	genome.wustl.edu	37	15	93277269	93277269	+	RNA	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	93277269	93277269	C	T	SNP	ENSG00000258741	ENST00000556424	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.982	-	-	-	no_errors	RP11-386M24.4	Clone_based_vega_gene	ENSG00000258741				41	0	0	48	7	12.7273
CHD2	0	genome.wustl.edu	37	15	93482927	93482927	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	93482927	93482927	G	A	SNP	CHD2	ENST00000420239	human	ensembl	74_37	+1	known	missense	c.671	p.R224Q	1.000	NULL	pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow	-	no_errors	CHD2	HGNC	ENSG00000173575				126	0	0	102	13	11.3043
CHD2	0	genome.wustl.edu	37	15	93489068	93489068	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	93489068	93489068	T	C	SNP	CHD2	ENST00000420239	human	ensembl	74_37	+1	known	missense	c.1171	p.S391P	1.000	pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow	pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow	-	no_errors	CHD2	HGNC	ENSG00000173575				49	0	0	40	3	6.97674
IGF1R	0	genome.wustl.edu	37	15	99251247	99251247	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	99251247	99251247	G	T	SNP	IGF1R	ENST00000268035	human	ensembl	74_37	+1	known	missense	c.551	p.G184V	1.000	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_Furin-like_Cys-rich_dom	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_dom,pfam_Furin-like_Cys-rich_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_Fibronectin_type3,smart_Furin_repeat,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom	-	no_errors	IGF1R	HGNC	ENSG00000140443				103	0	0	98	7	6.66667
SYNM	0	genome.wustl.edu	37	15	99669820	99669820	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	99669820	99669820	G	A	SNP	SYNM	ENST00000336292	human	ensembl	74_37	+1	known	missense	c.1252	p.V418I	0.000	NULL	pfam_IF	-	no_errors	SYNM	HGNC	ENSG00000182253				140	0	0	106	32	23.1884
NUBP1	0	genome.wustl.edu	37	16	10846529	10846529	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	10846529	10846529	A	G	SNP	NUBP1	ENST00000283027	human	ensembl	74_37	+1	known	silent	c.321	p.G107	1.000	pfam_CobQ/CobB/MinD/ParA_Nub-bd_dom,pfam_ATPase_MipZ/NubP2/Cfd1,superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_ATPase-like_ParA/MinD,pfam_CobQ/CobB/MinD/ParA_Nub-bd_dom,pfam_Anion-transp_ATPase-like_dom,pfam_ATPase_MipZ/NubP2/Cfd1,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	NUBP1	HGNC	ENSG00000103274				131	0	0	112	10	8.19672
CIITA	0	genome.wustl.edu	37	16	11001075	11001075	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	11001075	11001075	G	A	SNP	CIITA	ENST00000324288	human	ensembl	74_37	+1	known	missense	c.1726	p.A576T	0.001	superfamily_P-loop_NTPase,pfscan_NACHT_NTPase	superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,prints_MHC_II_transact	-	no_errors	CIITA	HGNC	ENSG00000179583				41	0	0	35	14	28.5714
CLEC16A	0	genome.wustl.edu	37	16	11217761	11217761	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	11217761	11217761	G	T	SNP	CLEC16A	ENST00000409790	human	ensembl	74_37	+1	known	missense	c.2431	p.G811C	1.000	NULL	pfam_Uncharacterised_FPL	-	no_errors	CLEC16A	HGNC	ENSG00000038532				21	0	0	22	4	15.3846
SSTR5	0	genome.wustl.edu	37	16	1129571	1129571	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	1129571	1129571	G	A	SNP	SSTR5	ENST00000293897	human	ensembl	74_37	+1	known	missense	c.703	p.V235M	0.106	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Somatstn_rcpt_5,prints_Somatstn_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Somatstn_rcpt_5,prints_Somatstn_rcpt,prints_Opioid_rcpt,prints_NPY_rcpt	-	no_errors	SSTR5	HGNC	ENSG00000162009				24	0	0	25	9	26.4706
RSL1D1	0	genome.wustl.edu	37	16	11941581	11941581	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	11941581	11941581	T	C	SNP	RSL1D1	ENST00000571133	human	ensembl	74_37	-1	known	missense	c.328	p.T110A	1.000	pfam_Ribosomal_L1/biogenesis,superfamily_Ribosomal_L1-like	pfam_Ribosomal_L1/biogenesis,superfamily_Ribosomal_L1-like	-	no_errors	RSL1D1	HGNC	ENSG00000171490				115	0	0	78	6	7.14286
SNX29	0	genome.wustl.edu	37	16	12450122	12450122	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	12450122	12450122	G	A	SNP	SNX29	ENST00000306030	human	ensembl	74_37	+1	known	missense	c.730	p.D244N	1.000	NULL	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	SNX29	HGNC	ENSG00000048471				21	0	0	17	9	34.6154
CACNA1H	0	genome.wustl.edu	37	16	1250495	1250495	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	1250495	1250495	G	A	SNP	CACNA1H	ENST00000348261	human	ensembl	74_37	+1	known	missense	c.1043	p.R348H	0.999	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_PKD_2	-	no_errors	CACNA1H	HGNC	ENSG00000196557				34	0	0	37	4	9.7561
ERCC4	0	genome.wustl.edu	37	16	14020418	14020418	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	14020418	14020418	G	A	SNP	ERCC4	ENST00000311895	human	ensembl	74_37	+1	known	missense	c.389	p.G130D	1.000	tigrfam_Rad1	pfam_ERCC4_domain,superfamily_Restrct_endonuc-II-like,superfamily_RuvA_2-like,smart_ERCC4_domain,tigrfam_Rad1	-	no_errors	ERCC4	HGNC	ENSG00000175595				157	0	0	111	10	8.26446
NPRL3	0	genome.wustl.edu	37	16	142647	142647	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	142647	142647	A	G	SNP	NPRL3	ENST00000399953	human	ensembl	74_37	-1	known	silent	c.1108	p.L370	1.000	pfam_NPR3	pfam_NPR3,superfamily_Galactose-bd-like	-	no_errors	NPRL3	HGNC	ENSG00000103148				23	0	0	34	4	10.5263
NOMO1	0	genome.wustl.edu	37	16	14951484	14951484	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	14951484	14951484	C	T	SNP	NOMO1	ENST00000287667	human	ensembl	74_37	+1	known	missense	c.1192	p.P398S	1.000	superfamily_CarboxyPept-like_regulatory	pfam_DUF2012,superfamily_CarboxyPept-like_regulatory,superfamily_Carb-bd-like_fold,superfamily_Collagen-bd_Cna_B-typ_dom	-	no_errors	NOMO1	HGNC	ENSG00000103512				187	0	0	145	22	13.1737
NTAN1	0	genome.wustl.edu	37	16	15131997	15131997	+	Nonsense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	15131997	15131997	A	T	SNP	NTAN1	ENST00000287706	human	ensembl	74_37	-1	known	nonsense	c.824	p.L275*	1.000	NULL	NULL	-	no_errors	NTAN1	HGNC	ENSG00000157045				92	0	0	50	23	31.5068
RRN3	0	genome.wustl.edu	37	16	15180276	15180276	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	15180276	15180276	A	G	SNP	RRN3	ENST00000198767	human	ensembl	74_37	-1	known	silent	c.288	p.R96	0.308	pfam_RNA_pol_I_trans_ini_fac_RRN3,superfamily_ARM-type_fold	pfam_RNA_pol_I_trans_ini_fac_RRN3,superfamily_ARM-type_fold	-	no_errors	RRN3	HGNC	ENSG00000085721				178	0	0	108	13	10.7438
MYH11	0	genome.wustl.edu	37	16	15815483	15815483	+	Silent	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	15815483	15815483	G	T	SNP	MYH11	ENST00000396324	human	ensembl	74_37	-1	known	silent	c.4395	p.A1465	0.302	pfam_Myosin_tail	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_t-SNARE,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYH11	HGNC	ENSG00000133392				85	0	0	78	5	6.0241
ABCC6	0	genome.wustl.edu	37	16	16257015	16257015	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	16257015	16257015	C	T	SNP	ABCC6	ENST00000205557	human	ensembl	74_37	-1	known	missense	c.3341	p.R1114H	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom,tigrfam_Multidrug-R_assoc	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,tigrfam_Multidrug-R_assoc	-	no_errors	ABCC6	HGNC	ENSG00000091262				53	0	0	43	9	17.3077
ABCC6	0	genome.wustl.edu	37	16	16302603	16302603	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	16302603	16302603	T	C	SNP	ABCC6	ENST00000205557	human	ensembl	74_37	-1	known	missense	c.776	p.N259S	0.000	tigrfam_Multidrug-R_assoc	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,tigrfam_Multidrug-R_assoc	-	no_errors	ABCC6	HGNC	ENSG00000091262				69	0	0	61	6	8.95522
XYLT1	0	genome.wustl.edu	37	16	17228514	17228514	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	17228514	17228514	A	G	SNP	XYLT1	ENST00000261381	human	ensembl	74_37	-1	known	missense	c.1843	p.Y615H	1.000	pfam_XylT	pfam_XylT,pfam_Glyco_trans_14	-	no_errors	XYLT1	HGNC	ENSG00000103489				133	0	0	121	14	10.3704
IGFALS	0	genome.wustl.edu	37	16	1840991	1840991	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	1840991	1840991	G	A	SNP	IGFALS	ENST00000415638	human	ensembl	74_37	-1	known	silent	c.1542	p.D514	0.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	IGFALS	HGNC	ENSG00000099769				19	0	0	25	8	24.2424
NOMO2	0	genome.wustl.edu	37	16	18542829	18542829	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	18542829	18542829	A	G	SNP	NOMO2	ENST00000381474	human	ensembl	74_37	-1	known	missense	c.1496	p.V499A	1.000	superfamily_Carb-bd-like_fold	pfam_DUF2012,superfamily_Carb-bd-like_fold,superfamily_CarboxyPept-like_regulatory,superfamily_Collagen-bd_Cna_B-typ_dom	-	no_errors	NOMO2	HGNC	ENSG00000185164				243	0	0	210	22	9.48276
ABCC6P1	0	genome.wustl.edu	37	16	18602471	18602471	+	RNA	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	18602471	18602471	G	T	SNP	ABCC6P1	ENST00000546162	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ABCC6P1	HGNC	ENSG00000256340				82	0	0	50	5	9.09091
ARL6IP1	0	genome.wustl.edu	37	16	18806808	18806808	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	18806808	18806808	A	C	SNP	ARL6IP1	ENST00000304414	human	ensembl	74_37	-1	known	missense	c.386	p.L129R	0.998	pfam_Reticulon	pfam_Reticulon	-	no_errors	ARL6IP1	HGNC	ENSG00000170540				107	0	0	57	8	12.3077
SMG1	0	genome.wustl.edu	37	16	18847478	18847478	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	18847478	18847478	A	G	SNP	SMG1	ENST00000389467	human	ensembl	74_37	-1	known	silent	c.7834	p.L2612	0.999	superfamily_ARM-type_fold	pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	SMG1	HGNC	ENSG00000157106				28	0	0	15	5	25
ITPRIPL2	0	genome.wustl.edu	37	16	19126266	19126266	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	19126266	19126266	C	T	SNP	ITPRIPL2	ENST00000381440	human	ensembl	74_37	+1	known	silent	c.483	p.S161	1.000	NULL	NULL	-	no_errors	ITPRIPL2	HGNC	ENSG00000205730				25	0	0	33	3	8.33333
ITPRIPL2	0	genome.wustl.edu	37	16	19126792	19126792	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	19126792	19126792	C	A	SNP	ITPRIPL2	ENST00000381440	human	ensembl	74_37	+1	known	missense	c.1009	p.L337I	1.000	NULL	NULL	-	no_errors	ITPRIPL2	HGNC	ENSG00000205730				56	0	0	51	7	12.069
ITPRIPL2	0	genome.wustl.edu	37	16	19126815	19126815	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	19126815	19126815	G	T	SNP	ITPRIPL2	ENST00000381440	human	ensembl	74_37	+1	known	missense	c.1032	p.E344D	0.976	NULL	NULL	-	no_errors	ITPRIPL2	HGNC	ENSG00000205730				59	0	0	60	8	11.7647
SYT17	0	genome.wustl.edu	37	16	19195180	19195180	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	19195180	19195180	G	A	SNP	SYT17	ENST00000355377	human	ensembl	74_37	+1	known	missense	c.662	p.R221H	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom,prints_Synaptotagmin	-	no_errors	SYT17	HGNC	ENSG00000103528				114	0	0	103	31	23.1343
CCP110	0	genome.wustl.edu	37	16	19548587	19548587	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	19548587	19548587	G	A	SNP	CCP110	ENST00000381396	human	ensembl	74_37	+1	known	silent	c.1596	p.E532	0.999	NULL	NULL	-	no_errors	CCP110	HGNC	ENSG00000103540				78	0	0	74	8	9.7561
C16orf62	0	genome.wustl.edu	37	16	19627476	19627476	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	19627476	19627476	A	G	SNP	C16orf62	ENST00000438132	human	ensembl	74_37	+1	known	missense	c.1331	p.N444S	1.000	NULL	NULL	-	no_errors	C16orf62	HGNC	ENSG00000103544				147	0	0	78	8	9.30233
C16orf62	0	genome.wustl.edu	37	16	19680566	19680566	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	19680566	19680566	A	T	SNP	C16orf62	ENST00000438132	human	ensembl	74_37	+1	known	missense	c.2573	p.E858V	0.990	NULL	NULL	-	no_errors	C16orf62	HGNC	ENSG00000103544				101	0	0	67	11	14.1026
UMOD	0	genome.wustl.edu	37	16	20352615	20352615	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	20352615	20352615	G	A	SNP	UMOD	ENST00000424589	human	ensembl	74_37	-1	known	missense	c.1474	p.R492W	0.966	pfam_ZP_dom,smart_ZP_dom,pfscan_ZP_dom	pfam_ZP_dom,pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_ZP_dom,pfscan_EG-like_dom,pfscan_ZP_dom,prints_ZP_dom	-	no_errors	UMOD	HGNC	ENSG00000169344				45	0	0	44	4	8.33333
PDILT	0	genome.wustl.edu	37	16	20386160	20386160	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	20386160	20386160	A	G	SNP	PDILT	ENST00000302451	human	ensembl	74_37	-1	known	missense	c.665	p.V222A	0.883	superfamily_Thioredoxin-like_fold	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	-	no_errors	PDILT	HGNC	ENSG00000169340				116	0	0	102	9	8.10811
LOC81691	0	genome.wustl.edu	37	16	20851156	20851156	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	20851156	20851156	T	A	SNP	LOC81691	ENST00000261377	human	ensembl	74_37	+1	known	missense	c.1463	p.V488D	0.000	NULL	pfam_Exonuclease_RNaseT/DNA_pol3,pfam_RRM_dom,superfamily_RNaseH-like_dom,smart_Exonuclease,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	AC004381.6	Clone_based_vega_gene	ENSG00000005189				232	0	0	198	23	10.4072
DNAH3	0	genome.wustl.edu	37	16	20975196	20975196	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	20975196	20975196	G	A	SNP	DNAH3	ENST00000261383	human	ensembl	74_37	-1	known	missense	c.10010	p.T3337M	0.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_AAA+_ATPase	-	no_errors	DNAH3	HGNC	ENSG00000158486				148	0	0	100	32	24.2424
DNAH3	0	genome.wustl.edu	37	16	21031117	21031117	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	21031117	21031117	G	A	SNP	DNAH3	ENST00000261383	human	ensembl	74_37	-1	known	missense	c.5851	p.L1951F	1.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_AAA+_ATPase	-	no_errors	DNAH3	HGNC	ENSG00000158486				86	0	0	71	8	10.1266
DNAH3	0	genome.wustl.edu	37	16	21061243	21061243	+	Silent	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	21061243	21061243	G	T	SNP	DNAH3	ENST00000261383	human	ensembl	74_37	-1	known	silent	c.4335	p.A1445	0.888	superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_AAA+_ATPase	-	no_errors	DNAH3	HGNC	ENSG00000158486				152	0	0	115	7	5.7377
DNAH3	0	genome.wustl.edu	37	16	21086796	21086796	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	21086796	21086796	G	A	SNP	DNAH3	ENST00000261383	human	ensembl	74_37	-1	known	missense	c.3056	p.T1019M	0.000	pfam_Dynein_heavy_dom-2,superfamily_P-loop_NTPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_AAA+_ATPase	-	no_errors	DNAH3	HGNC	ENSG00000158486				131	0	0	81	23	22.1154
CRYM	0	genome.wustl.edu	37	16	21273385	21273385	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	21273385	21273385	C	A	SNP	CRYM	ENST00000219599	human	ensembl	74_37	-1	known	missense	c.768	p.K256N	0.977	pfam_ODC_Mu_crystall	pfam_ODC_Mu_crystall,pfam_Shikm_DH/Glu-tRNA_Rdtase,pfam_6PGDH_NADP-bd	-	no_errors	CRYM	HGNC	ENSG00000103316				72	0	0	69	6	8
PKD1	0	genome.wustl.edu	37	16	2140480	2140480	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	2140480	2140480	G	A	SNP	PKD1	ENST00000262304	human	ensembl	74_37	-1	known	missense	c.12250	p.P4084S	0.014	pfam_PKD1_2_channel	pfam_PKD_dom,pfam_PKD1_2_channel,pfam_PKD/REJ-like,pfam_PLAT/LH2_dom,pfam_C-type_lectin,pfam_WSC_carb-bd,pfam_GPS_dom,superfamily_C-type_lectin_fold,superfamily_Lipase_LipOase,superfamily_PKD_dom,superfamily_Fe_hydrogenase,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_WSC_carb-bd_subgr,smart_PKD/Chitinase_dom,smart_C-type_lectin,smart_GPS_dom,smart_PLAT/LH2_dom,prints_PKD_1,pfscan_GPS_dom,pfscan_C-type_lectin,pfscan_PKD_dom,pfscan_PLAT/LH2_dom,pfscan_REJ-like,pfscan_WSC_carb-bd,tigrfam_Polycystin_cat	-	no_errors	PKD1	HGNC	ENSG00000008710				16	0	0	26	3	10.3448
PKD1	0	genome.wustl.edu	37	16	2147934	2147934	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	2147934	2147934	C	T	SNP	PKD1	ENST00000262304	human	ensembl	74_37	-1	known	missense	c.10102	p.D3368N	0.993	NULL	pfam_PKD_dom,pfam_PKD1_2_channel,pfam_PKD/REJ-like,pfam_PLAT/LH2_dom,pfam_C-type_lectin,pfam_WSC_carb-bd,pfam_GPS_dom,superfamily_C-type_lectin_fold,superfamily_Lipase_LipOase,superfamily_PKD_dom,superfamily_Fe_hydrogenase,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_WSC_carb-bd_subgr,smart_PKD/Chitinase_dom,smart_C-type_lectin,smart_GPS_dom,smart_PLAT/LH2_dom,prints_PKD_1,pfscan_GPS_dom,pfscan_C-type_lectin,pfscan_PKD_dom,pfscan_PLAT/LH2_dom,pfscan_REJ-like,pfscan_WSC_carb-bd,tigrfam_Polycystin_cat	-	no_errors	PKD1	HGNC	ENSG00000008710				23	0	0	13	4	23.5294
PKD1	0	genome.wustl.edu	37	16	2160411	2160411	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	2160411	2160411	T	A	SNP	PKD1	ENST00000262304	human	ensembl	74_37	-1	known	missense	c.4757	p.D1586V	1.000	pfam_PKD_dom,superfamily_PKD_dom,smart_PKD/Chitinase_dom,pfscan_PKD_dom,tigrfam_Polycystin_cat	pfam_PKD_dom,pfam_PKD1_2_channel,pfam_PKD/REJ-like,pfam_PLAT/LH2_dom,pfam_C-type_lectin,pfam_WSC_carb-bd,pfam_GPS_dom,superfamily_C-type_lectin_fold,superfamily_Lipase_LipOase,superfamily_PKD_dom,superfamily_Fe_hydrogenase,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_WSC_carb-bd_subgr,smart_PKD/Chitinase_dom,smart_C-type_lectin,smart_GPS_dom,smart_PLAT/LH2_dom,prints_PKD_1,pfscan_GPS_dom,pfscan_C-type_lectin,pfscan_PKD_dom,pfscan_PLAT/LH2_dom,pfscan_REJ-like,pfscan_WSC_carb-bd,tigrfam_Polycystin_cat	-	no_errors	PKD1	HGNC	ENSG00000008710				46	0	0	46	5	9.80392
METTL9	0	genome.wustl.edu	37	16	21624098	21624098	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	21624098	21624098	T	C	SNP	METTL9	ENST00000358154	human	ensembl	74_37	+1	known	missense	c.298	p.Y100H	1.000	pfam_DREV_MeTrfase	pfam_DREV_MeTrfase,pfam_Methyltransf_12,pfam_Methyltransf_11	-	no_errors	METTL9	HGNC	ENSG00000197006				86	0	0	53	4	7.01754
PKD1	0	genome.wustl.edu	37	16	2164608	2164608	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	2164608	2164608	C	T	SNP	PKD1	ENST00000262304	human	ensembl	74_37	-1	known	missense	c.2416	p.V806M	0.025	tigrfam_Polycystin_cat	pfam_PKD_dom,pfam_PKD1_2_channel,pfam_PKD/REJ-like,pfam_PLAT/LH2_dom,pfam_C-type_lectin,pfam_WSC_carb-bd,pfam_GPS_dom,superfamily_C-type_lectin_fold,superfamily_Lipase_LipOase,superfamily_PKD_dom,superfamily_Fe_hydrogenase,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_WSC_carb-bd_subgr,smart_PKD/Chitinase_dom,smart_C-type_lectin,smart_GPS_dom,smart_PLAT/LH2_dom,prints_PKD_1,pfscan_GPS_dom,pfscan_C-type_lectin,pfscan_PKD_dom,pfscan_PLAT/LH2_dom,pfscan_REJ-like,pfscan_WSC_carb-bd,tigrfam_Polycystin_cat	-	no_errors	PKD1	HGNC	ENSG00000008710				12	0	0	7	4	36.3636
POLR3E	0	genome.wustl.edu	37	16	22335840	22335840	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	22335840	22335840	T	C	SNP	POLR3E	ENST00000299853	human	ensembl	74_37	+1	known	missense	c.1145	p.V382A	1.000	pfam_RNA_pol_III_Rpc5	pfam_RNA_pol_III_Rpc5	-	no_errors	POLR3E	HGNC	ENSG00000058600				147	0	0	125	12	8.75912
LOC653786	0	genome.wustl.edu	37	16	22558294	22558294	+	RNA	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	22558294	22558294	C	T	SNP	LOC653786	ENST00000550753	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.984	-	-	-	no_errors	RP11-368J21.3	Clone_based_vega_gene	ENSG00000257838				114	0	0	83	11	11.7021
HS3ST2	0	genome.wustl.edu	37	16	22926539	22926539	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	22926539	22926539	G	A	SNP	HS3ST2	ENST00000261374	human	ensembl	74_37	+1	known	missense	c.760	p.V254M	0.980	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	HS3ST2	HGNC	ENSG00000122254				112	0	0	89	36	28.8
USP31	0	genome.wustl.edu	37	16	23079803	23079803	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	23079803	23079803	C	A	SNP	USP31	ENST00000219689	human	ensembl	74_37	-1	known	missense	c.3623	p.S1208I	0.003	NULL	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP31	HGNC	ENSG00000103404				129	0	0	139	16	10.3226
USP31	0	genome.wustl.edu	37	16	23079919	23079919	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	23079919	23079919	G	A	SNP	USP31	ENST00000219689	human	ensembl	74_37	-1	known	silent	c.3507	p.S1169	0.000	NULL	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP31	HGNC	ENSG00000103404				78	0	0	70	10	12.5
SCNN1G	0	genome.wustl.edu	37	16	23208672	23208672	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	23208672	23208672	A	G	SNP	SCNN1G	ENST00000300061	human	ensembl	74_37	+1	known	missense	c.1001	p.Q334R	1.000	pfam_Na+channel_ASC,prints_Na+channel_ASC,tigrfam_EnaC	pfam_Na+channel_ASC,prints_Na+channel_ASC,tigrfam_EnaC	-	no_errors	SCNN1G	HGNC	ENSG00000166828				89	0	0	73	8	9.87654
SCNN1G	0	genome.wustl.edu	37	16	23223385	23223385	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	23223385	23223385	A	G	SNP	SCNN1G	ENST00000300061	human	ensembl	74_37	+1	known	missense	c.1207	p.M403V	1.000	pfam_Na+channel_ASC,prints_Na+channel_ASC,tigrfam_EnaC	pfam_Na+channel_ASC,prints_Na+channel_ASC,tigrfam_EnaC	-	no_errors	SCNN1G	HGNC	ENSG00000166828				87	0	0	88	8	8.33333
ABCA3	0	genome.wustl.edu	37	16	2333349	2333349	+	Nonsense_Mutation	SNP	G	G	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	2333349	2333349	G	C	SNP	ABCA3	ENST00000301732	human	ensembl	74_37	-1	known	nonsense	c.3873	p.Y1291*	1.000	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA3	HGNC	ENSG00000167972				47	0	0	40	9	18.3673
SCNN1B	0	genome.wustl.edu	37	16	23366710	23366710	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	23366710	23366710	A	G	SNP	SCNN1B	ENST00000307331	human	ensembl	74_37	+1	known	missense	c.811	p.I271V	1.000	pfam_Na+channel_ASC,tigrfam_EnaC	pfam_Na+channel_ASC,prints_Na+channel_ASC,tigrfam_EnaC	-	no_errors	SCNN1B	HGNC	ENSG00000168447				63	0	0	64	7	9.85915
SCNN1B	0	genome.wustl.edu	37	16	23383173	23383173	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	23383173	23383173	A	G	SNP	SCNN1B	ENST00000307331	human	ensembl	74_37	+1	known	missense	c.1256	p.Y419C	1.000	pfam_Na+channel_ASC,tigrfam_EnaC	pfam_Na+channel_ASC,prints_Na+channel_ASC,tigrfam_EnaC	-	no_errors	SCNN1B	HGNC	ENSG00000168447				70	0	0	73	6	7.59494
NDUFAB1	0	genome.wustl.edu	37	16	23607444	23607444	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	23607444	23607444	C	A	SNP	NDUFAB1	ENST00000007516	human	ensembl	74_37	-1	known	missense	c.168	p.Q56H	1.000	NULL	pfam_Acyl_carrier_prot-like,superfamily_Acyl_carrier_prot-like,pfscan_Acyl_carrier_prot-like,tigrfam_Acyl_carrier	-	no_errors	NDUFAB1	HGNC	ENSG00000004779				36	0	0	30	8	21.0526
PRKCB	0	genome.wustl.edu	37	16	24192144	24192144	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	24192144	24192144	T	C	SNP	PRKCB	ENST00000303531	human	ensembl	74_37	+1	known	silent	c.1428	p.S476	0.006	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Protein_kinase_C_a/b/g,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_C2_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Protein_kinase_C_a/b/g,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_DAG/PE-bd,prints_C2_dom	-	no_errors	PRKCB	HGNC	ENSG00000166501				119	0	0	74	25	25.2525
RBBP6	0	genome.wustl.edu	37	16	24578545	24578545	+	Silent	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	24578545	24578545	A	T	SNP	RBBP6	ENST00000319715	human	ensembl	74_37	+1	known	silent	c.1671	p.V557	0.538	NULL	pfam_DWNN_domain,pfam_Ubox_domain,pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_CCHC,smart_Znf_RING,pfscan_Znf_RING,pfscan_Znf_CCHC	-	no_errors	RBBP6	HGNC	ENSG00000122257				73	0	0	82	6	6.81818
RBBP6	0	genome.wustl.edu	37	16	24581095	24581095	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	24581095	24581095	G	A	SNP	RBBP6	ENST00000319715	human	ensembl	74_37	+1	known	silent	c.3084	p.V1028	0.000	NULL	pfam_DWNN_domain,pfam_Ubox_domain,pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_CCHC,smart_Znf_RING,pfscan_Znf_RING,pfscan_Znf_CCHC	-	no_errors	RBBP6	HGNC	ENSG00000122257				124	1	0.8	81	25	23.5849
TNRC6A	0	genome.wustl.edu	37	16	24802947	24802947	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	24802947	24802947	T	C	SNP	TNRC6A	ENST00000395799	human	ensembl	74_37	+1	known	missense	c.2984	p.I995T	0.999	NULL	pfam_Argonaute_hook_dom,superfamily_UBA-like	-	no_errors	TNRC6A	HGNC	ENSG00000090905				68	0	0	55	4	6.77966
SLC5A11	0	genome.wustl.edu	37	16	24919375	24919375	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	24919375	24919375	T	G	SNP	SLC5A11	ENST00000347898	human	ensembl	74_37	+1	known	missense	c.1357	p.S453A	1.000	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A11	HGNC	ENSG00000158865				174	0	0	161	26	13.9037
SLC5A11	0	genome.wustl.edu	37	16	24922695	24922695	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	24922695	24922695	G	A	SNP	SLC5A11	ENST00000347898	human	ensembl	74_37	+1	known	nonsense	c.1869	p.W623*	1.000	NULL	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A11	HGNC	ENSG00000158865				196	0	0	172	15	8.02139
ARHGAP17	0	genome.wustl.edu	37	16	24950789	24950789	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	24950789	24950789	T	C	SNP	ARHGAP17	ENST00000289968	human	ensembl	74_37	-1	known	silent	c.1620	p.P540	1.000	NULL	pfam_BAR_dom,pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_BAR_dom,smart_RhoGAP_dom,pfscan_BAR_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP17	HGNC	ENSG00000140750				32	0	0	33	3	8.33333
ARHGAP17	0	genome.wustl.edu	37	16	24955129	24955129	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	24955129	24955129	T	C	SNP	ARHGAP17	ENST00000289968	human	ensembl	74_37	-1	known	silent	c.1296	p.E432	0.278	superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_BAR_dom,pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_BAR_dom,smart_RhoGAP_dom,pfscan_BAR_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP17	HGNC	ENSG00000140750				125	0	0	86	10	10.4167
TBC1D24	0	genome.wustl.edu	37	16	2546590	2546590	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	2546590	2546590	C	T	SNP	TBC1D24	ENST00000293970	human	ensembl	74_37	+1	known	silent	c.441	p.D147	0.919	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom	pfam_TLDc,pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,smart_TLDc	-	no_errors	TBC1D24	HGNC	ENSG00000162065				40	0	0	43	5	10.4167
IL4R	0	genome.wustl.edu	37	16	27374122	27374122	+	Silent	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	27374122	27374122	T	G	SNP	IL4R	ENST00000170630	human	ensembl	74_37	+1	known	silent	c.1449	p.T483	0.000	NULL	pfam_IL-4_rcpt-alpha_N,superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL4R	HGNC	ENSG00000077238				96	0	0	61	27	30.6818
IL21R	0	genome.wustl.edu	37	16	27454346	27454346	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	27454346	27454346	G	A	SNP	IL21R	ENST00000337929	human	ensembl	74_37	+1	known	missense	c.416	p.R139H	0.077	superfamily_Fibronectin_type3	superfamily_Fibronectin_type3	-	no_errors	IL21R	HGNC	ENSG00000103522				120	0	0	100	20	16.6667
GTF3C1	0	genome.wustl.edu	37	16	27499693	27499693	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	27499693	27499693	G	A	SNP	GTF3C1	ENST00000356183	human	ensembl	74_37	-1	known	silent	c.3555	p.S1185	0.001	NULL	pfam_TFIIIC_Bblock-bd	-	no_errors	GTF3C1	HGNC	ENSG00000077235				156	0	0	143	9	5.92105
KCTD5	0	genome.wustl.edu	37	16	2752389	2752389	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	2752389	2752389	C	T	SNP	KCTD5	ENST00000564195	human	ensembl	74_37	+1	putative	nonsense	c.493	p.R165*	0.965	NULL	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	-	no_errors	KCTD5	HGNC	ENSG00000167977				78	0	0	76	17	18.2796
KIAA0556	0	genome.wustl.edu	37	16	27761012	27761012	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	27761012	27761012	C	T	SNP	KIAA0556	ENST00000261588	human	ensembl	74_37	+1	known	missense	c.2731	p.R911W	1.000	NULL	superfamily_Thaumatin	-	no_errors	KIAA0556	HGNC	ENSG00000047578				55	0	0	57	9	13.6364
SRRM2	0	genome.wustl.edu	37	16	2812491	2812491	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	2812491	2812491	A	G	SNP	SRRM2	ENST00000301740	human	ensembl	74_37	+1	known	silent	c.1962	p.R654	0.086	NULL	pfam_mRNA_splic_Cwf21	-	no_errors	SRRM2	HGNC	ENSG00000167978				79	0	0	100	8	7.40741
SRRM2	0	genome.wustl.edu	37	16	2814127	2814127	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	2814127	2814127	C	T	SNP	SRRM2	ENST00000301740	human	ensembl	74_37	+1	known	silent	c.3598	p.L1200	0.939	NULL	pfam_mRNA_splic_Cwf21	-	no_errors	SRRM2	HGNC	ENSG00000167978				162	0	0	123	32	20.6452
SULT1A2	0	genome.wustl.edu	37	16	28604874	28604874	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	28604874	28604874	G	A	SNP	SULT1A2	ENST00000335715	human	ensembl	74_37	-1	known	missense	c.388	p.R130C	1.000	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	SULT1A2	HGNC	ENSG00000197165				63	0	0	66	18	21.4286
ATXN2L	0	genome.wustl.edu	37	16	28844557	28844557	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	28844557	28844557	G	A	SNP	ATXN2L	ENST00000395547	human	ensembl	74_37	+1	known	missense	c.1837	p.A613T	0.173	NULL	pfam_LsmAD_domain,pfam_Ataxin-2_C,superfamily_LSM_dom	-	no_errors	ATXN2L	HGNC	ENSG00000168488				81	0	0	77	18	18.9474
ATXN2L	0	genome.wustl.edu	37	16	28845679	28845679	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	28845679	28845679	C	A	SNP	ATXN2L	ENST00000395547	human	ensembl	74_37	+1	known	missense	c.2188	p.P730T	1.000	NULL	pfam_LsmAD_domain,pfam_Ataxin-2_C,superfamily_LSM_dom	-	no_errors	ATXN2L	HGNC	ENSG00000168488				107	1	0.925926	100	8	7.40741
ATXN2L	0	genome.wustl.edu	37	16	28847720	28847720	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	28847720	28847720	G	A	SNP	ATXN2L	ENST00000395547	human	ensembl	74_37	+1	known	silent	c.3213	p.P1071	1.000	NULL	pfam_LsmAD_domain,pfam_Ataxin-2_C,superfamily_LSM_dom	-	no_errors	ATXN2L	HGNC	ENSG00000168488				52	0	0	38	15	28.3019
SH2B1	0	genome.wustl.edu	37	16	28883270	28883270	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	28883270	28883270	C	T	SNP	SH2B1	ENST00000322610	human	ensembl	74_37	+1	known	silent	c.1479	p.P493	0.999	NULL	pfam_Phe_ZIP,pfam_Pleckstrin_homology,pfam_SH2,superfamily_Phe_ZIP,smart_Pleckstrin_homology,smart_SH2,pfscan_SH2,prints_SH2	-	no_errors	SH2B1	HGNC	ENSG00000178188				35	0	0	41	3	6.81818
RABEP2	0	genome.wustl.edu	37	16	28916347	28916347	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	28916347	28916347	G	A	SNP	RABEP2	ENST00000358201	human	ensembl	74_37	-1	known	missense	c.1627	p.R543C	1.000	NULL	pfam_Rabaptin_coiled-coil,pfam_Rabaptin_Rab5-bd_dom,prints_Rabaptin	-	no_errors	RABEP2	HGNC	ENSG00000177548				29	0	0	31	8	20.5128
RABEP2	0	genome.wustl.edu	37	16	28931258	28931258	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	28931258	28931258	A	G	SNP	RABEP2	ENST00000358201	human	ensembl	74_37	-1	known	missense	c.281	p.I94T	1.000	pfam_Rabaptin_coiled-coil	pfam_Rabaptin_coiled-coil,pfam_Rabaptin_Rab5-bd_dom,prints_Rabaptin	-	no_errors	RABEP2	HGNC	ENSG00000177548				43	0	0	27	6	18.1818
PRRT2	0	genome.wustl.edu	37	16	29825671	29825671	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	29825671	29825671	G	A	SNP	PRRT2	ENST00000567659	human	ensembl	74_37	+1	known	silent	c.897	p.Q299	1.000	pfam_CD225/Dispanin_fam	pfam_CD225/Dispanin_fam	-	no_errors	PRRT2	HGNC	ENSG00000167371				140	0	0	134	12	8.21918
SEZ6L2	0	genome.wustl.edu	37	16	29891331	29891331	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	29891331	29891331	G	T	SNP	SEZ6L2	ENST00000308713	human	ensembl	74_37	-1	known	missense	c.1427	p.T476N	1.000	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,pfam_CUB_dom,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	SEZ6L2	HGNC	ENSG00000174938				56	0	0	56	15	21.1268
TAOK2	0	genome.wustl.edu	37	16	29990778	29990778	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	29990778	29990778	T	C	SNP	TAOK2	ENST00000308893	human	ensembl	74_37	+1	known	missense	c.604	p.Y202H	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TAOK2	HGNC	ENSG00000149930				25	0	0	29	4	12.1212
TAOK2	0	genome.wustl.edu	37	16	29992970	29992970	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	29992970	29992970	C	T	SNP	TAOK2	ENST00000416441	human	ensembl	74_37	+1	known	missense	c.125	p.P42L	0.000	NULL	superfamily_Kinase-like_dom	-	no_errors	TAOK2	HGNC	ENSG00000149930				63	0	0	79	6	7.05882
DOC2A	0	genome.wustl.edu	37	16	30017638	30017638	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	30017638	30017638	C	T	SNP	DOC2A	ENST00000350119	human	ensembl	74_37	-1	known	missense	c.1072	p.G358R	1.000	superfamily_C2_dom,smart_C2_dom,pirsf_Doc2	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pirsf_Doc2,prints_Synaptotagmin,prints_C2_dom,pfscan_C2_dom	-	no_errors	DOC2A	HGNC	ENSG00000149927				23	0	0	28	7	20
CD2BP2	0	genome.wustl.edu	37	16	30364758	30364758	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	30364758	30364758	A	G	SNP	CD2BP2	ENST00000305596	human	ensembl	74_37	-1	known	missense	c.739	p.S247P	1.000	NULL	pfam_GYF,superfamily_GYF,smart_GYF,pfscan_GYF	-	no_errors	CD2BP2	HGNC	ENSG00000169217				65	0	0	81	7	7.95455
ITGAL	0	genome.wustl.edu	37	16	30507514	30507514	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	30507514	30507514	G	A	SNP	ITGAL	ENST00000356798	human	ensembl	74_37	+1	known	missense	c.1600	p.D534N	1.000	pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,smart_VWF_A,prints_Integrin_alpha,pfscan_VWF_A	-	no_errors	ITGAL	HGNC	ENSG00000005844				147	0	0	153	14	8.38323
ZNF768	0	genome.wustl.edu	37	16	30536163	30536163	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	30536163	30536163	T	C	SNP	ZNF768	ENST00000380412	human	ensembl	74_37	-1	known	missense	c.1298	p.E433G	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_RNA_pol_II_repeat_euk,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF768	HGNC	ENSG00000169957				44	0	0	37	5	11.9048
SRCAP	0	genome.wustl.edu	37	16	30734045	30734045	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	30734045	30734045	A	C	SNP	SRCAP	ENST00000262518	human	ensembl	74_37	+1	known	missense	c.3868	p.S1290R	1.000	NULL	pfam_SNF2_N,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,smart_AT_hook_DNA-bd_motif,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_AT_hook-like	-	no_errors	SRCAP	HGNC	ENSG00000080603				148	1	0.671141	146	30	17.0455
SRCAP	0	genome.wustl.edu	37	16	30750183	30750183	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	30750183	30750183	G	A	SNP	SRCAP	ENST00000262518	human	ensembl	74_37	+1	known	missense	c.8822	p.R2941Q	0.998	smart_AT_hook_DNA-bd_motif,prints_AT_hook-like	pfam_SNF2_N,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,smart_AT_hook_DNA-bd_motif,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_AT_hook-like	-	no_errors	SRCAP	HGNC	ENSG00000080603				63	0	0	54	18	25
SRCAP	0	genome.wustl.edu	37	16	30750685	30750685	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	30750685	30750685	A	G	SNP	SRCAP	ENST00000262518	human	ensembl	74_37	+1	known	silent	c.9324	p.P3108	0.009	NULL	pfam_SNF2_N,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,smart_AT_hook_DNA-bd_motif,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_AT_hook-like	-	no_errors	SRCAP	HGNC	ENSG00000080603				62	0	0	54	3	5.26316
SETD1A	0	genome.wustl.edu	37	16	30990644	30990644	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	30990644	30990644	G	A	SNP	SETD1A	ENST00000262519	human	ensembl	74_37	+1	known	silent	c.3537	p.P1179	0.977	NULL	pfam_COMPASS_Set1_N-SET,pfam_SET_dom,pfam_RRM_dom,smart_RRM_dom,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_RRM_dom	-	no_errors	SETD1A	HGNC	ENSG00000099381				53	0	0	33	10	23.2558
ZNF668	0	genome.wustl.edu	37	16	31072650	31072650	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	31072650	31072650	C	T	SNP	ZNF668	ENST00000426488	human	ensembl	74_37	-1	known	silent	c.1668	p.R556	0.827	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF668	HGNC	ENSG00000167394				63	0	0	74	7	8.64198
ZNF668	0	genome.wustl.edu	37	16	31072971	31072971	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	31072971	31072971	C	T	SNP	ZNF668	ENST00000426488	human	ensembl	74_37	-1	known	silent	c.1347	p.Q449	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF668	HGNC	ENSG00000167394				82	0	0	93	9	8.82353
ZNF668	0	genome.wustl.edu	37	16	31075475	31075475	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	31075475	31075475	G	A	SNP	ZNF668	ENST00000426488	human	ensembl	74_37	-1	known	silent	c.375	p.H125	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF668	HGNC	ENSG00000167394				39	0	0	37	3	7.5
ZNF646	0	genome.wustl.edu	37	16	31092587	31092587	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	31092587	31092587	A	C	SNP	ZNF646	ENST00000300850	human	ensembl	74_37	+1	known	missense	c.4942	p.T1648P	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF646	HGNC	ENSG00000167395				36	0	0	42	3	6.66667
PRSS53	0	genome.wustl.edu	37	16	31095491	31095491	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	31095491	31095491	C	T	SNP	PRSS53	ENST00000280606	human	ensembl	74_37	-1	known	missense	c.1591	p.A531T	0.921	NULL	pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	PRSS53	HGNC	ENSG00000151006				15	0	0	12	3	20
KAT8	0	genome.wustl.edu	37	16	31142181	31142181	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	31142181	31142181	G	A	SNP	KAT8	ENST00000448516	human	ensembl	74_37	+1	known	silent	c.1272	p.E424	0.999	superfamily_Acyl_CoA_acyltransferase	pfam_MOZ_SAS,pfam_Tudor-knot,superfamily_Acyl_CoA_acyltransferase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow	-	no_errors	KAT8	HGNC	ENSG00000103510				40	0	0	34	18	34.6154
PRSS8	0	genome.wustl.edu	37	16	31143846	31143846	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	31143846	31143846	G	A	SNP	PRSS8	ENST00000317508	human	ensembl	74_37	-1	known	silent	c.609	p.C203	0.999	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	PRSS8	HGNC	ENSG00000052344				68	0	0	66	7	9.58904
ITGAX	0	genome.wustl.edu	37	16	31383731	31383731	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	31383731	31383731	C	T	SNP	ITGAX	ENST00000268296	human	ensembl	74_37	+1	known	silent	c.2193	p.T731	0.009	pfam_Integrin_alpha-2,prints_Integrin_alpha	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGAX	HGNC	ENSG00000140678				72	0	0	72	8	10
ITGAX	0	genome.wustl.edu	37	16	31384582	31384582	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	31384582	31384582	G	A	SNP	ITGAX	ENST00000268296	human	ensembl	74_37	+1	known	silent	c.2379	p.L793	0.969	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGAX	HGNC	ENSG00000140678				71	0	0	74	5	6.32911
ITGAD	0	genome.wustl.edu	37	16	31424522	31424522	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	31424522	31424522	G	A	SNP	ITGAD	ENST00000389202	human	ensembl	74_37	+1	known	missense	c.1951	p.A651T	0.017	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGAD	HGNC	ENSG00000156886				65	0	0	99	7	6.60377
TGFB1I1	0	genome.wustl.edu	37	16	31485969	31485969	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	31485969	31485969	G	A	SNP	TGFB1I1	ENST00000394863	human	ensembl	74_37	+1	known	missense	c.605	p.G202D	1.000	pirsf_Leupaxin	pfam_Znf_LIM,smart_Znf_LIM,pirsf_Leupaxin,pfscan_Znf_LIM	-	no_errors	TGFB1I1	HGNC	ENSG00000140682				29	0	0	27	4	12.9032
TGFB1I1	0	genome.wustl.edu	37	16	31487398	31487398	+	Silent	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	31487398	31487398	C	A	SNP	TGFB1I1	ENST00000394863	human	ensembl	74_37	+1	known	silent	c.780	p.A260	0.995	pfam_Znf_LIM,smart_Znf_LIM,pirsf_Leupaxin,pfscan_Znf_LIM	pfam_Znf_LIM,smart_Znf_LIM,pirsf_Leupaxin,pfscan_Znf_LIM	-	no_errors	TGFB1I1	HGNC	ENSG00000140682				62	0	0	68	5	6.84932
ZNF205	0	genome.wustl.edu	37	16	3170039	3170039	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	3170039	3170039	C	T	SNP	ZNF205	ENST00000219091	human	ensembl	74_37	+1	known	missense	c.1378	p.R460C	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF205	HGNC	ENSG00000122386				61	0	0	67	7	9.45946
ZNF267	0	genome.wustl.edu	37	16	31926568	31926568	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	31926568	31926568	A	G	SNP	ZNF267	ENST00000300870	human	ensembl	74_37	+1	known	missense	c.998	p.H333R	0.001	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF267	HGNC	ENSG00000185947				155	0	0	110	7	5.98291
ZNF267	0	genome.wustl.edu	37	16	31927166	31927166	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	31927166	31927166	C	T	SNP	ZNF267	ENST00000300870	human	ensembl	74_37	+1	known	silent	c.1596	p.F532	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF267	HGNC	ENSG00000185947				62	0	0	32	5	13.5135
ZNF267	0	genome.wustl.edu	37	16	31927343	31927343	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	31927343	31927343	T	C	SNP	ZNF267	ENST00000300870	human	ensembl	74_37	+1	known	silent	c.1773	p.L591	0.003	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF267	HGNC	ENSG00000185947				64	0	0	47	8	14.5455
ZNF267	0	genome.wustl.edu	37	16	31927722	31927722	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	31927722	31927722	T	G	SNP	ZNF267	ENST00000300870	human	ensembl	74_37	+1	known	missense	c.2152	p.C718G	0.952	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF267	HGNC	ENSG00000185947				57	0	0	56	4	6.66667
OR1F1	0	genome.wustl.edu	37	16	3254364	3254364	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	3254364	3254364	C	A	SNP	OR1F1	ENST00000304646	human	ensembl	74_37	+1	known	missense	c.118	p.L40M	0.183	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR1F1	HGNC	ENSG00000168124				75	0	0	84	8	8.69565
MEFV	0	genome.wustl.edu	37	16	3293638	3293638	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	3293638	3293638	G	T	SNP	MEFV	ENST00000219596	human	ensembl	74_37	-1	known	missense	c.1849	p.L617M	0.000	superfamily_ConA-like_lec_gl_sf,smart_PRY,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_DAPIN,pfam_SPRY_rcpt,pfam_Znf_B-box,superfamily_ConA-like_lec_gl_sf,superfamily_DEATH-like_dom,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_DAPIN,pfscan_Znf_B-box,prints_Butyrophylin	-	no_errors	MEFV	HGNC	ENSG00000103313				366	2	0.543478	270	27	9.09091
PDIA2	0	genome.wustl.edu	37	16	334558	334558	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	334558	334558	G	T	SNP	PDIA2	ENST00000219406	human	ensembl	74_37	+1	known	missense	c.371	p.R124L	0.015	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold,prints_Thioredoxin,tigrfam_Prot_disulphide_isomerase	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold,prints_Thioredoxin,tigrfam_Prot_disulphide_isomerase	-	no_errors	PDIA2	HGNC	ENSG00000185615				21	0	0	27	7	20.5882
PDIA2	0	genome.wustl.edu	37	16	336467	336467	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	336467	336467	A	G	SNP	PDIA2	ENST00000219406	human	ensembl	74_37	+1	known	missense	c.1234	p.K412E	1.000	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold,tigrfam_Prot_disulphide_isomerase	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold,prints_Thioredoxin,tigrfam_Prot_disulphide_isomerase	-	no_errors	PDIA2	HGNC	ENSG00000185615				87	0	0	59	8	11.9403
SLX4	0	genome.wustl.edu	37	16	3632367	3632367	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	3632367	3632367	G	A	SNP	SLX4	ENST00000294008	human	ensembl	74_37	-1	known	silent	c.5481	p.G1827	0.990	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	-	no_errors	SLX4	HGNC	ENSG00000188827				76	0	0	85	6	6.59341
SLX4	0	genome.wustl.edu	37	16	3656564	3656564	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	3656564	3656564	A	G	SNP	SLX4	ENST00000294008	human	ensembl	74_37	-1	known	missense	c.671	p.L224S	0.582	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	-	no_errors	SLX4	HGNC	ENSG00000188827				233	0	0	206	22	9.64912
SLX4	0	genome.wustl.edu	37	16	3658827	3658827	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	3658827	3658827	A	G	SNP	SLX4	ENST00000294008	human	ensembl	74_37	-1	known	missense	c.139	p.S47P	0.996	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	-	no_errors	SLX4	HGNC	ENSG00000188827				121	0	0	89	9	9.18367
CREBBP	0	genome.wustl.edu	37	16	3778617	3778617	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	3778617	3778617	G	A	SNP	CREBBP	ENST00000262367	human	ensembl	74_37	-1	known	missense	c.6431	p.A2144V	0.033	NULL	pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX_dom,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX_dom,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX_dom,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	CREBBP	HGNC	ENSG00000005339				84	0	0	94	11	10.4762
CREBBP	0	genome.wustl.edu	37	16	3779699	3779699	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	3779699	3779699	G	A	SNP	CREBBP	ENST00000262367	human	ensembl	74_37	-1	known	silent	c.5349	p.C1783	1.000	pfam_Znf_TAZ,superfamily_Znf_TAZ,smart_Znf_TAZ,pfscan_Znf_TAZ	pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX_dom,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX_dom,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX_dom,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	CREBBP	HGNC	ENSG00000005339				52	0	0	44	3	6.38298
CREBBP	0	genome.wustl.edu	37	16	3843433	3843433	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	3843433	3843433	G	A	SNP	CREBBP	ENST00000262367	human	ensembl	74_37	-1	known	silent	c.1170	p.N390	0.971	pfam_Znf_TAZ,superfamily_Znf_TAZ,smart_Znf_TAZ,pfscan_Znf_TAZ	pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX_dom,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX_dom,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX_dom,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	CREBBP	HGNC	ENSG00000005339				157	0	0	143	11	7.14286
ADCY9	0	genome.wustl.edu	37	16	4164493	4164493	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	4164493	4164493	A	G	SNP	ADCY9	ENST00000294016	human	ensembl	74_37	-1	known	silent	c.951	p.I317	0.992	NULL	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY9	HGNC	ENSG00000162104				115	0	0	112	13	10.4
ADCY9	0	genome.wustl.edu	37	16	4164997	4164997	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	4164997	4164997	C	T	SNP	ADCY9	ENST00000294016	human	ensembl	74_37	-1	known	silent	c.447	p.A149	0.009	NULL	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY9	HGNC	ENSG00000162104				35	0	0	47	5	9.61538
SRL	0	genome.wustl.edu	37	16	4242609	4242609	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	4242609	4242609	C	T	SNP	SRL	ENST00000399609	human	ensembl	74_37	-1	known	missense	c.967	p.E323K	1.000	superfamily_P-loop_NTPase	pfam_Dynamin_GTPase,pfam_GTP_binding_domain,superfamily_P-loop_NTPase	-	no_errors	SRL	HGNC	ENSG00000185739				171	0	0	146	16	9.87654
TMEM8A	0	genome.wustl.edu	37	16	425133	425133	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	425133	425133	T	A	SNP	TMEM8A	ENST00000431232	human	ensembl	74_37	-1	known	missense	c.1439	p.E480V	0.039	NULL	pfam_DUF3522,pfscan_EG-like_dom	-	no_errors	TMEM8A	HGNC	ENSG00000129925				83	0	0	76	22	22.449
TFAP4	0	genome.wustl.edu	37	16	4308190	4308190	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	4308190	4308190	C	A	SNP	TFAP4	ENST00000204517	human	ensembl	74_37	-1	known	missense	c.883	p.A295S	0.997	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	TFAP4	HGNC	ENSG00000090447				46	0	0	42	14	25
TFAP4	0	genome.wustl.edu	37	16	4308199	4308199	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	4308199	4308199	G	C	SNP	TFAP4	ENST00000204517	human	ensembl	74_37	-1	known	missense	c.874	p.Q292E	1.000	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	TFAP4	HGNC	ENSG00000090447				43	0	0	43	7	14
CORO7-PAM16	0	genome.wustl.edu	37	16	4409546	4409546	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	4409546	4409546	C	T	SNP	CORO7-PAM16	ENST00000572467	human	ensembl	74_37	-1	known	missense	c.2185	p.V729M	0.998	pfam_DUF1900	pfam_DUF1900,pfam_WD40_repeat,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CORO7-PAM16	HGNC	ENSG00000103426				31	0	0	35	8	18.6047
CORO7-PAM16	0	genome.wustl.edu	37	16	4438557	4438557	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	4438557	4438557	C	T	SNP	CORO7-PAM16	ENST00000572467	human	ensembl	74_37	-1	known	missense	c.691	p.G231R	1.000	smart_WD40_repeat	pfam_DUF1900,pfam_WD40_repeat,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CORO7-PAM16	HGNC	ENSG00000103426				26	0	0	30	7	18.9189
ORC6	0	genome.wustl.edu	37	16	46731415	46731415	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	46731415	46731415	A	C	SNP	ORC6	ENST00000219097	human	ensembl	74_37	+1	known	missense	c.677	p.E226A	0.971	NULL	pfam_ORC6	-	no_errors	ORC6	HGNC	ENSG00000091651				55	0	0	33	3	8.33333
DNAJA2	0	genome.wustl.edu	37	16	46998641	46998641	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	46998641	46998641	A	T	SNP	DNAJA2	ENST00000317089	human	ensembl	74_37	-1	known	missense	c.656	p.V219D	1.000	superfamily_HSP40/DnaJ_pept-bd	pfam_DnaJ_C,pfam_DnaJ_domain,pfam_HSP_DnaJ_Cys-rich_dom,superfamily_DnaJ_domain,superfamily_HSP40/DnaJ_pept-bd,superfamily_HSP_DnaJ_Cys-rich_dom,smart_DnaJ_domain,pfscan_DnaJ_domain,pfscan_HSP_DnaJ_Cys-rich_dom,prints_DnaJ_domain	-	no_errors	DNAJA2	HGNC	ENSG00000069345				159	0	0	135	18	11.7647
PHKB	0	genome.wustl.edu	37	16	47497890	47497890	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	47497890	47497890	C	T	SNP	PHKB	ENST00000455779	human	ensembl	74_37	+1	known	missense	c.41	p.A14V	0.941	NULL	pfam_Glyco_hydro_15,superfamily_6-hairpin_glycosidase-like	-	no_errors	PHKB	HGNC	ENSG00000102893				93	0	0	85	6	6.59341
ANKS3	0	genome.wustl.edu	37	16	4780145	4780145	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	4780145	4780145	G	A	SNP	ANKS3	ENST00000304283	human	ensembl	74_37	-1	known	silent	c.6	p.S2	0.009	NULL	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_SAM_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SAM,prints_Ankyrin_rpt	-	no_errors	ANKS3	HGNC	ENSG00000168096				36	0	0	35	4	10.2564
LONP2	0	genome.wustl.edu	37	16	48381563	48381563	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	48381563	48381563	A	T	SNP	LONP2	ENST00000285737	human	ensembl	74_37	+1	known	missense	c.2084	p.E695V	1.000	pfam_Pept_S16_C,superfamily_Ribosomal_S5_D2-typ_fold,tigrfam_Lon_bac/euk-typ	pfam_Pept_S16_C,pfam_Pept_S16_N,pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_P-loop_NTPase,superfamily_PUA-like_domain,smart_Pept_S16_N,smart_AAA+_ATPase,tigrfam_Lon_bac/euk-typ	-	no_errors	LONP2	HGNC	ENSG00000102910				65	0	0	40	5	11.1111
ROGDI	0	genome.wustl.edu	37	16	4847966	4847966	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	4847966	4847966	G	A	SNP	ROGDI	ENST00000322048	human	ensembl	74_37	-1	known	missense	c.668	p.A223V	0.925	pfam_RAVE2/Rogdi	pfam_RAVE2/Rogdi	-	no_errors	ROGDI	HGNC	ENSG00000067836				33	0	0	24	5	17.2414
ROGDI	0	genome.wustl.edu	37	16	4851560	4851560	+	Silent	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	4851560	4851560	C	A	SNP	ROGDI	ENST00000322048	human	ensembl	74_37	-1	known	silent	c.144	p.P48	0.000	pfam_RAVE2/Rogdi	pfam_RAVE2/Rogdi	-	no_errors	ROGDI	HGNC	ENSG00000067836				18	0	0	8	3	27.2727
UBN1	0	genome.wustl.edu	37	16	4908571	4908571	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	4908571	4908571	T	C	SNP	UBN1	ENST00000262376	human	ensembl	74_37	+1	known	silent	c.339	p.G113	0.999	NULL	NULL	-	no_errors	UBN1	HGNC	ENSG00000118900				59	0	0	38	7	15.5556
UBN1	0	genome.wustl.edu	37	16	4920857	4920857	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	4920857	4920857	G	A	SNP	UBN1	ENST00000262376	human	ensembl	74_37	+1	known	silent	c.1443	p.E481	1.000	NULL	NULL	-	no_errors	UBN1	HGNC	ENSG00000118900				36	0	0	34	3	8.10811
CBLN1	0	genome.wustl.edu	37	16	49313459	49313459	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	49313459	49313459	C	A	SNP	CBLN1	ENST00000219197	human	ensembl	74_37	-1	known	missense	c.438	p.Q146H	1.000	pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q	pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	CBLN1	HGNC	ENSG00000102924				60	0	0	54	6	10
C16orf78	0	genome.wustl.edu	37	16	49407988	49407988	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	49407988	49407988	A	G	SNP	C16orf78	ENST00000299191	human	ensembl	74_37	+1	known	silent	c.138	p.K46	0.039	NULL	NULL	-	no_errors	C16orf78	HGNC	ENSG00000166152				79	0	0	67	5	6.94444
PPL	0	genome.wustl.edu	37	16	4942192	4942192	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	4942192	4942192	C	T	SNP	PPL	ENST00000345988	human	ensembl	74_37	-1	known	missense	c.1673	p.R558Q	0.299	smart_Spectrin/alpha-actinin	pfam_Plectin_repeat,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	PPL	HGNC	ENSG00000118898				40	0	0	47	6	11.3208
ZNF423	0	genome.wustl.edu	37	16	49671085	49671085	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	49671085	49671085	G	A	SNP	ZNF423	ENST00000262383	human	ensembl	74_37	-1	known	missense	c.1978	p.R660W	0.996	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF423	HGNC	ENSG00000102935				53	0	0	42	13	23.6364
ADCY7	0	genome.wustl.edu	37	16	50326626	50326626	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	50326626	50326626	A	G	SNP	ADCY7	ENST00000254235	human	ensembl	74_37	+1	known	missense	c.577	p.T193A	0.990	NULL	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY7	HGNC	ENSG00000121281				60	0	0	59	9	13.2353
SEC14L5	0	genome.wustl.edu	37	16	5056027	5056027	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	5056027	5056027	A	T	SNP	SEC14L5	ENST00000251170	human	ensembl	74_37	+1	known	missense	c.1415	p.D472V	1.000	pfam_CRAL-TRIO_dom,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	pfam_PRELI/MSF1,pfam_CRAL-TRIO_dom,pfam_CRAL/TRIO_N_dom,superfamily_CRAL-TRIO_dom,superfamily_CRAL/TRIO_N_dom,superfamily_GOLD,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_GOLD,pfscan_PRELI/MSF1,prints_CRAL-bd_toc_tran	-	no_errors	SEC14L5	HGNC	ENSG00000103184				34	0	0	37	4	9.7561
NKD1	0	genome.wustl.edu	37	16	50583381	50583381	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	50583381	50583381	A	T	SNP	NKD1	ENST00000268459	human	ensembl	74_37	+1	known	missense	c.107	p.E36V	1.000	NULL	pfscan_EF_hand_dom	-	no_errors	NKD1	HGNC	ENSG00000140807				29	0	0	29	5	14.7059
NKD1	0	genome.wustl.edu	37	16	50667258	50667258	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	50667258	50667258	A	G	SNP	NKD1	ENST00000268459	human	ensembl	74_37	+1	known	missense	c.979	p.K327E	1.000	NULL	pfscan_EF_hand_dom	-	no_errors	NKD1	HGNC	ENSG00000140807				110	0	0	96	23	19.3277
RBL2	0	genome.wustl.edu	37	16	53504299	53504299	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	53504299	53504299	T	C	SNP	RBL2	ENST00000262133	human	ensembl	74_37	+1	known	silent	c.2250	p.I750	1.000	NULL	pfam_RB_A,pfam_RB_B,pfam_RB_N,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	RBL2	HGNC	ENSG00000103479				49	0	0	48	6	11.1111
RPGRIP1L	0	genome.wustl.edu	37	16	53675335	53675335	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	53675335	53675335	A	G	SNP	RPGRIP1L	ENST00000379925	human	ensembl	74_37	-1	known	silent	c.2736	p.V912	0.989	superfamily_C2_dom	pfam_DUF3250,pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	RPGRIP1L	HGNC	ENSG00000103494				120	0	0	58	8	12.1212
FTO	0	genome.wustl.edu	37	16	54145700	54145700	+	Nonsense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	54145700	54145700	T	A	SNP	FTO	ENST00000471389	human	ensembl	74_37	+1	known	nonsense	c.1391	p.L464*	0.296	NULL	NULL	-	no_errors	FTO	HGNC	ENSG00000140718				251	0	0	218	19	8.01688
IRX6	0	genome.wustl.edu	37	16	55362679	55362679	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	55362679	55362679	G	T	SNP	IRX6	ENST00000290552	human	ensembl	74_37	+1	known	missense	c.789	p.E263D	0.993	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,smart_Iroquois_homeo,pfscan_Homeobox_dom	-	no_errors	IRX6	HGNC	ENSG00000159387				74	0	0	79	8	9.1954
MMP2	0	genome.wustl.edu	37	16	55518028	55518028	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	55518028	55518028	C	T	SNP	MMP2	ENST00000219070	human	ensembl	74_37	+1	known	nonsense	c.481	p.R161*	1.000	pfam_Pept_M10_metallopeptidase,smart_Peptidase_Metallo	pfam_Pept_M10_metallopeptidase,pfam_FN_type2_col-bd,pfam_Hemopexin-like_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Kringle-like,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_FN_type2_col-bd,smart_Hemopexin-like_repeat,pfscan_FN_type2_col-bd,prints_Pept_M10A	-	no_errors	MMP2	HGNC	ENSG00000087245				89	0	0	68	20	22.7273
MMP2	0	genome.wustl.edu	37	16	55525713	55525713	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	55525713	55525713	G	A	SNP	MMP2	ENST00000219070	human	ensembl	74_37	+1	known	missense	c.1181	p.G394E	1.000	pfam_Pept_M10_metallopeptidase,smart_Peptidase_Metallo	pfam_Pept_M10_metallopeptidase,pfam_FN_type2_col-bd,pfam_Hemopexin-like_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Kringle-like,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_FN_type2_col-bd,smart_Hemopexin-like_repeat,pfscan_FN_type2_col-bd,prints_Pept_M10A	-	no_errors	MMP2	HGNC	ENSG00000087245				57	0	0	54	6	10
MMP2	0	genome.wustl.edu	37	16	55532275	55532275	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	55532275	55532275	C	T	SNP	MMP2	ENST00000219070	human	ensembl	74_37	+1	known	missense	c.1684	p.P562S	1.000	pfam_Hemopexin-like_repeat,superfamily_Hemopexin-like_dom,smart_Hemopexin-like_repeat	pfam_Pept_M10_metallopeptidase,pfam_FN_type2_col-bd,pfam_Hemopexin-like_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Kringle-like,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_FN_type2_col-bd,smart_Hemopexin-like_repeat,pfscan_FN_type2_col-bd,prints_Pept_M10A	-	no_errors	MMP2	HGNC	ENSG00000087245				76	0	0	60	15	20
LPCAT2	0	genome.wustl.edu	37	16	55583280	55583280	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	55583280	55583280	C	A	SNP	LPCAT2	ENST00000262134	human	ensembl	74_37	+1	known	missense	c.1027	p.L343M	0.823	NULL	pfam_EF_hand_dom,pfam_Plipid/glycerol_acylTrfase,smart_Plipid/glycerol_acylTrfase,smart_EF_hand_dom,pfscan_EF_hand_dom,prints_Recoverin	-	no_errors	LPCAT2	HGNC	ENSG00000087253				150	1	0.662252	109	7	6.03448
SLC6A2	0	genome.wustl.edu	37	16	55719159	55719159	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	55719159	55719159	T	G	SNP	SLC6A2	ENST00000219833	human	ensembl	74_37	+1	known	missense	c.749	p.F250C	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_noradrenaline	-	no_errors	SLC6A2	HGNC	ENSG00000103546				124	0	0	85	9	9.57447
CES5A	0	genome.wustl.edu	37	16	55899902	55899902	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	55899902	55899902	G	A	SNP	CES5A	ENST00000521992	human	ensembl	74_37	-1	known	silent	c.765	p.S255	0.059	pfam_CarbesteraseB,pfam_AB_hydrolase_3	pfam_CarbesteraseB,pfam_AB_hydrolase_3	-	no_errors	CES5A	HGNC	ENSG00000159398				51	0	0	45	6	11.7647
CES5A	0	genome.wustl.edu	37	16	55903587	55903587	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	55903587	55903587	C	T	SNP	CES5A	ENST00000521992	human	ensembl	74_37	-1	known	missense	c.574	p.A192T	1.000	pfam_CarbesteraseB,pfam_AB_hydrolase_3	pfam_CarbesteraseB,pfam_AB_hydrolase_3	-	no_errors	CES5A	HGNC	ENSG00000159398				28	0	0	22	5	18.5185
OGFOD1	0	genome.wustl.edu	37	16	56501107	56501107	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	56501107	56501107	C	T	SNP	OGFOD1	ENST00000566157	human	ensembl	74_37	+1	known	missense	c.688	p.R230C	1.000	smart_Pro_4_hyd_alph	pfam_Oxoglutarate/Fe-dep_Oase_C,smart_Pro_4_hyd_alph	-	no_errors	OGFOD1	HGNC	ENSG00000087263				197	0	0	136	38	21.8391
NUP93	0	genome.wustl.edu	37	16	56782236	56782236	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	56782236	56782236	T	C	SNP	NUP93	ENST00000308159	human	ensembl	74_37	+1	known	missense	c.77	p.L26P	1.000	NULL	pfam_Nucleoporin_int_Nup93/Nic96	-	no_errors	NUP93	HGNC	ENSG00000102900				60	0	0	71	6	7.79221
NUP93	0	genome.wustl.edu	37	16	56878563	56878563	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	56878563	56878563	A	G	SNP	NUP93	ENST00000569842	human	ensembl	74_37	+1	putative	missense	c.2620	p.T874A	0.005	NULL	pfam_Nucleoporin_int_Nup93/Nic96	-	no_errors	NUP93	HGNC	ENSG00000102900				26	0	0	26	3	10.3448
HERPUD1	0	genome.wustl.edu	37	16	56974002	56974002	+	Splice_Site	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	56974002	56974002	T	C	SNP	HERPUD1	ENST00000570273	human	ensembl	74_37	+1	known	splice_site	c.NULL	NULL	0.156	-	-	-	no_errors	HERPUD1	HGNC	ENSG00000051108				107	0	0	89	9	9.18367
CETP	0	genome.wustl.edu	37	16	56995923	56995923	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	56995923	56995923	T	C	SNP	CETP	ENST00000200676	human	ensembl	74_37	+1	known	missense	c.32	p.L11P	1.000	pirsf_Cholesteryl_ester_transfer	pfam_Lipid-bd_serum_glycop_C,pfam_Lipid-bd_serum_glycop_N,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_N,smart_Lipid-bd_serum_glycop_C,pirsf_Cholesteryl_ester_transfer	-	no_errors	CETP	HGNC	ENSG00000087237				35	0	0	48	7	12.7273
GPR114	0	genome.wustl.edu	37	16	57601918	57601918	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	57601918	57601918	G	A	SNP	GPR114	ENST00000340339	human	ensembl	74_37	+1	known	silent	c.972	p.A324	0.432	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	pfam_GPCR_2_secretin-like,pfam_GPS_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like,prints_GPCR_2_orphan_rcpt_GPR56	-	no_errors	GPR114	HGNC	ENSG00000159618				70	0	0	47	13	21.6667
TEPP	0	genome.wustl.edu	37	16	58011825	58011825	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	58011825	58011825	G	A	SNP	TEPP	ENST00000290871	human	ensembl	74_37	+1	known	silent	c.270	p.A90	0.378	NULL	NULL	-	no_errors	TEPP	HGNC	ENSG00000159648				49	0	0	42	21	33.3333
ZNF319	0	genome.wustl.edu	37	16	58031417	58031417	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	58031417	58031417	C	T	SNP	ZNF319	ENST00000299237	human	ensembl	74_37	-1	known	silent	c.753	p.T251	0.994	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF319	HGNC	ENSG00000166188				74	0	0	77	14	15.3846
GINS3	0	genome.wustl.edu	37	16	58438412	58438412	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	58438412	58438412	G	A	SNP	GINS3	ENST00000426538	human	ensembl	74_37	+1	known	missense	c.547	p.G183R	1.000	pfam_GINS_complex	pfam_GINS_complex	-	no_errors	GINS3	HGNC	ENSG00000181938				74	0	0	56	4	6.66667
SETD6	0	genome.wustl.edu	37	16	58550154	58550154	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	58550154	58550154	C	T	SNP	SETD6	ENST00000219315	human	ensembl	74_37	+1	known	missense	c.383	p.A128V	1.000	pfam_SET_dom,pirsf_RuBisCo-cyt_methylase	pfam_SET_dom,pfam_Rubisco_LSMT_subst-bd,superfamily_Rubisco_LSMT_subst-bd,pirsf_RuBisCo-cyt_methylase	-	no_errors	SETD6	HGNC	ENSG00000103037				49	0	0	40	4	9.09091
CNOT1	0	genome.wustl.edu	37	16	58577483	58577483	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	58577483	58577483	A	G	SNP	CNOT1	ENST00000441024	human	ensembl	74_37	-1	known	missense	c.4462	p.Y1488H	0.005	NULL	superfamily_ARM-type_fold	-	no_errors	CNOT1	HGNC	ENSG00000125107				62	0	0	54	3	5.26316
CNOT1	0	genome.wustl.edu	37	16	58589714	58589714	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	58589714	58589714	G	A	SNP	CNOT1	ENST00000317147	human	ensembl	74_37	-1	known	missense	c.2578	p.P860S	1.000	NULL	pfam_CCR4-Not_Not1_C,superfamily_ARM-type_fold	-	no_errors	CNOT1	HGNC	ENSG00000125107				84	0	0	60	4	6.25
SLC38A7	0	genome.wustl.edu	37	16	58712265	58712265	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	58712265	58712265	T	C	SNP	SLC38A7	ENST00000219320	human	ensembl	74_37	-1	known	missense	c.583	p.R195G	1.000	pfam_AA_transpt_TM,pfam_Tryptophan/tyrosine_permease	pfam_AA_transpt_TM,pfam_Tryptophan/tyrosine_permease	-	no_errors	SLC38A7	HGNC	ENSG00000103042				64	0	0	66	9	12
CAPN15	0	genome.wustl.edu	37	16	597774	597774	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	597774	597774	C	T	SNP	CAPN15	ENST00000219611	human	ensembl	74_37	+1	known	silent	c.936	p.A312	0.268	NULL	pfam_Peptidase_C2_calpain_cat,pfam_Znf_RanBP2,smart_Znf_RanBP2,smart_Peptidase_C2_calpain_cat,pfscan_Znf_RanBP2,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	-	no_errors	CAPN15	HGNC	ENSG00000103326				23	0	0	15	5	25
C16orf11	0	genome.wustl.edu	37	16	614329	614329	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	614329	614329	G	A	SNP	C16orf11	ENST00000409413	human	ensembl	74_37	+1	known	silent	c.1035	p.E345	0.003	NULL	NULL	-	no_errors	C16orf11	HGNC	ENSG00000161992				10	0	0	13	3	18.75
PIGQ	0	genome.wustl.edu	37	16	624233	624233	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	624233	624233	G	A	SNP	PIGQ	ENST00000026218	human	ensembl	74_37	+1	known	silent	c.159	p.R53	1.000	NULL	pfam_GlcNAc_Gpi1	-	no_errors	PIGQ	HGNC	ENSG00000007541				26	0	0	16	4	20
CDH11	0	genome.wustl.edu	37	16	64981928	64981928	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	64981928	64981928	G	A	SNP	CDH11	ENST00000268603	human	ensembl	74_37	-1	known	missense	c.1969	p.R657C	1.000	pfam_Cadherin_cytoplasmic-dom	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH11	HGNC	ENSG00000140937				123	0	0	92	5	5.15464
CDH5	0	genome.wustl.edu	37	16	66424419	66424419	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	66424419	66424419	C	T	SNP	CDH5	ENST00000341529	human	ensembl	74_37	+1	known	missense	c.895	p.R299W	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH5	HGNC	ENSG00000179776				78	0	0	55	13	19.1176
CMTM2	0	genome.wustl.edu	37	16	66613716	66613716	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	66613716	66613716	G	T	SNP	CMTM2	ENST00000268595	human	ensembl	74_37	+1	known	missense	c.206	p.R69L	0.010	NULL	NULL	-	no_errors	CMTM2	HGNC	ENSG00000140932				81	0	0	75	5	6.25
DYNC1LI2	0	genome.wustl.edu	37	16	66764088	66764088	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	66764088	66764088	A	G	SNP	DYNC1LI2	ENST00000258198	human	ensembl	74_37	-1	known	missense	c.968	p.L323S	1.000	pfam_Dynein_light_int_chain	pfam_Dynein_light_int_chain,superfamily_P-loop_NTPase	-	no_errors	DYNC1LI2	HGNC	ENSG00000135720				69	0	0	55	5	8.33333
C16orf70	0	genome.wustl.edu	37	16	67180991	67180991	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	67180991	67180991	C	T	SNP	C16orf70	ENST00000219139	human	ensembl	74_37	+1	known	missense	c.1226	p.P409L	1.000	NULL	pfam_UPF0183	-	no_errors	C16orf70	HGNC	ENSG00000125149				89	0	0	99	20	16.8067
NOL3	0	genome.wustl.edu	37	16	67208597	67208597	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	67208597	67208597	A	G	SNP	NOL3	ENST00000568146	human	ensembl	74_37	+1	known	missense	c.359	p.H120R	0.001	NULL	pfam_CARD,superfamily_DEATH-like_dom,smart_CARD,pfscan_CARD	-	no_errors	NOL3	HGNC	ENSG00000140939				30	0	0	27	3	10
FAM65A	0	genome.wustl.edu	37	16	67575891	67575891	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	67575891	67575891	G	T	SNP	FAM65A	ENST00000422602	human	ensembl	74_37	+1	known	missense	c.1262	p.R421M	0.016	NULL	superfamily_ARM-type_fold,superfamily_HR1_rho-bd	-	no_errors	FAM65A	HGNC	ENSG00000039523				66	0	0	61	9	12.8571
RANBP10	0	genome.wustl.edu	37	16	67763897	67763897	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	67763897	67763897	G	A	SNP	RANBP10	ENST00000317506	human	ensembl	74_37	-1	known	silent	c.942	p.T314	0.806	smart_CTLH_C,pfscan_CTLH_C	pfam_SPRY_rcpt,pfam_CTLH/CRA,pfam_LisH_dimerisation_subgr,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,smart_CTLH_C,smart_CRA_dom,pfscan_B30.2/SPRY,pfscan_LisH_dimerisation,pfscan_CTLH_C	-	no_errors	RANBP10	HGNC	ENSG00000141084				64	0	0	70	7	9.09091
EDC4	0	genome.wustl.edu	37	16	67911221	67911221	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	67911221	67911221	G	A	SNP	EDC4	ENST00000358933	human	ensembl	74_37	+1	known	missense	c.553	p.A185T	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EDC4	HGNC	ENSG00000038358				56	0	0	42	7	14.2857
EDC4	0	genome.wustl.edu	37	16	67915267	67915267	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	67915267	67915267	G	T	SNP	EDC4	ENST00000358933	human	ensembl	74_37	+1	known	missense	c.2736	p.K912N	0.996	NULL	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EDC4	HGNC	ENSG00000038358				120	0	0	111	7	5.9322
EDC4	0	genome.wustl.edu	37	16	67916191	67916191	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	67916191	67916191	C	T	SNP	EDC4	ENST00000358933	human	ensembl	74_37	+1	known	silent	c.3237	p.G1079	1.000	NULL	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EDC4	HGNC	ENSG00000038358				17	0	0	8	3	27.2727
NRN1L	0	genome.wustl.edu	37	16	67919655	67919655	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	67919655	67919655	C	T	SNP	NRN1L	ENST00000339176	human	ensembl	74_37	+1	known	missense	c.110	p.A37V	0.000	NULL	NULL	-	no_errors	NRN1L	HGNC	ENSG00000188038				43	0	0	40	12	23.0769
CTRL	0	genome.wustl.edu	37	16	67964403	67964403	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	67964403	67964403	C	A	SNP	CTRL	ENST00000574481	human	ensembl	74_37	-1	known	missense	c.407	p.R136L	0.000	pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	CTRL	HGNC	ENSG00000141086				166	0	0	156	12	7.14286
PSMB10	0	genome.wustl.edu	37	16	67968708	67968708	+	Silent	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	67968708	67968708	G	T	SNP	PSMB10	ENST00000358514	human	ensembl	74_37	-1	known	silent	c.702	p.P234	0.031	pfam_Proteasome_bsu_C	pfam_Proteasome_sua/b,pfam_Proteasome_bsu_C,prints_Pept_T1A_subB	-	no_errors	PSMB10	HGNC	ENSG00000205220				109	1	0.909091	104	11	9.56522
SLC12A4	0	genome.wustl.edu	37	16	67979673	67979673	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	67979673	67979673	C	T	SNP	SLC12A4	ENST00000422611	human	ensembl	74_37	-1	known	silent	c.2847	p.E949	0.799	tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease/SLC12A_dom,pfam_K/Cl_cotranspt_1/3,prints_KCL_cotranspt,prints_K/Cl_cotranspt1,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A4	HGNC	ENSG00000124067				44	0	0	42	5	10.6383
DPEP3	0	genome.wustl.edu	37	16	68014116	68014116	+	Silent	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	68014116	68014116	G	T	SNP	DPEP3	ENST00000268793	human	ensembl	74_37	-1	known	silent	c.243	p.T81	0.001	NULL	pfam_Peptidase_M19	-	no_errors	DPEP3	HGNC	ENSG00000141096				34	0	0	35	5	12.5
ESRP2	0	genome.wustl.edu	37	16	68264194	68264194	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	68264194	68264194	G	C	SNP	ESRP2	ENST00000565858	human	ensembl	74_37	-1	known	missense	c.2119	p.L707V	1.000	NULL	superfamily_RNaseH-like_dom,smart_RRM_dom	-	no_errors	ESRP2	HGNC	ENSG00000103067				110	0	0	119	8	6.29921
SLC7A6OS	0	genome.wustl.edu	37	16	68338046	68338046	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	68338046	68338046	G	A	SNP	SLC7A6OS	ENST00000263997	human	ensembl	74_37	-1	known	silent	c.561	p.R187	0.279	NULL	NULL	-	no_errors	SLC7A6OS	HGNC	ENSG00000103061				180	0	0	133	17	11.3333
PRMT7	0	genome.wustl.edu	37	16	68373745	68373745	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	68373745	68373745	T	C	SNP	PRMT7	ENST00000339507	human	ensembl	74_37	+1	known	silent	c.801	p.F267	0.985	pirsf_Arg_MeTrfase_PRMT7	pfam_Ribosomal-L11_MeTrfase_PrmA,pirsf_Arg_MeTrfase_PRMT7	-	no_errors	PRMT7	HGNC	ENSG00000132600				120	0	0	100	8	7.40741
SMPD3	0	genome.wustl.edu	37	16	68397447	68397447	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	68397447	68397447	G	A	SNP	SMPD3	ENST00000219334	human	ensembl	74_37	-1	known	missense	c.1661	p.T554M	0.003	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase	-	no_errors	SMPD3	HGNC	ENSG00000103056				50	0	0	62	5	7.46269
CDH3	0	genome.wustl.edu	37	16	68712677	68712677	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	68712677	68712677	G	A	SNP	CDH3	ENST00000264012	human	ensembl	74_37	+1	known	missense	c.559	p.A187T	0.998	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH3	HGNC	ENSG00000062038				44	0	0	34	4	10.5263
CDH3	0	genome.wustl.edu	37	16	68716321	68716321	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	68716321	68716321	T	C	SNP	CDH3	ENST00000264012	human	ensembl	74_37	+1	known	silent	c.1113	p.G371	0.983	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH3	HGNC	ENSG00000062038				45	0	0	46	3	6.12245
CDH1	0	genome.wustl.edu	37	16	68857436	68857436	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	68857436	68857436	G	A	SNP	CDH1	ENST00000261769	human	ensembl	74_37	+1	known	missense	c.2071	p.A691T	0.000	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068				124	0	0	108	11	9.2437
SNTB2	0	genome.wustl.edu	37	16	69334808	69334808	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	69334808	69334808	G	A	SNP	SNTB2	ENST00000336278	human	ensembl	74_37	+1	known	missense	c.1604	p.R535H	1.000	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology	-	no_errors	SNTB2	HGNC	ENSG00000168807				80	0	0	64	6	8.57143
NFAT5	0	genome.wustl.edu	37	16	69727557	69727557	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	69727557	69727557	C	T	SNP	NFAT5	ENST00000432919	human	ensembl	74_37	+1	known	nonsense	c.3829	p.Q1277*	0.994	NULL	pfam_RHD,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT,pfscan_RHD,prints_NFAT	-	no_errors	NFAT5	HGNC	ENSG00000102908				67	0	0	48	6	11.1111
PDPR	0	genome.wustl.edu	37	16	70154527	70154527	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	70154527	70154527	G	T	SNP	PDPR	ENST00000288050	human	ensembl	74_37	+1	known	missense	c.132	p.Q44H	0.994	NULL	pfam_FAD-dep_OxRdtase,pfam_GCV_T_N,pfam_GCV_T_C,pfam_FAD_bind_dom	-	no_errors	PDPR	HGNC	ENSG00000090857				82	0	0	66	7	9.58904
WDR90	0	genome.wustl.edu	37	16	701681	701681	+	Silent	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	701681	701681	G	T	SNP	WDR90	ENST00000549091	human	ensembl	74_37	+1	novel	silent	c.774	p.P258	0.000	NULL	pfam_WD40_repeat,pfam_DUF667,pfam_Nucleoporin_Nup160,superfamily_Quinonprotein_ADH-like_supfam,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR90	HGNC	ENSG00000161996				133	1	0.746269	133	28	17.3913
AARS	0	genome.wustl.edu	37	16	70286780	70286780	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	70286780	70286780	G	A	SNP	AARS	ENST00000261772	human	ensembl	74_37	-1	known	silent	c.2751	p.S917	0.831	pfam_Pesterase_DHHA1,tigrfam_Ala-tRNA-lgiase_IIc	pfam_Ala-tRNA-synth_IIc_N,pfam_tRNA_SAD,pfam_Pesterase_DHHA1,superfamily_Ala-tRNA-ligase_IIc_anticod-bd,superfamily_Thr/Ala-tRNA-synth_IIc_edit,smart_tRNA_SAD,prints_Ala-tRNA-lgiase_IIc,pfscan_Ala-tRNA-synth_IIc_core,tigrfam_Ala-tRNA-lgiase_IIc	-	no_errors	AARS	HGNC	ENSG00000090861				94	0	0	83	9	9.78261
AARS	0	genome.wustl.edu	37	16	70294945	70294945	+	Splice_Site	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	70294945	70294945	A	G	SNP	AARS	ENST00000261772	human	ensembl	74_37	-1	known	splice_site	c.1785+2	e12+2	1.000	-	-	-	no_errors	AARS	HGNC	ENSG00000090861				102	0	0	77	5	6.09756
AARS	0	genome.wustl.edu	37	16	70302259	70302259	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	70302259	70302259	C	T	SNP	AARS	ENST00000261772	human	ensembl	74_37	-1	known	missense	c.986	p.R329H	1.000	pfam_Ala-tRNA-synth_IIc_N,superfamily_Ala-tRNA-ligase_IIc_anticod-bd,prints_Ala-tRNA-lgiase_IIc,pfscan_Ala-tRNA-synth_IIc_core,tigrfam_Ala-tRNA-lgiase_IIc	pfam_Ala-tRNA-synth_IIc_N,pfam_tRNA_SAD,pfam_Pesterase_DHHA1,superfamily_Ala-tRNA-ligase_IIc_anticod-bd,superfamily_Thr/Ala-tRNA-synth_IIc_edit,smart_tRNA_SAD,prints_Ala-tRNA-lgiase_IIc,pfscan_Ala-tRNA-synth_IIc_core,tigrfam_Ala-tRNA-lgiase_IIc	-	no_errors	AARS	HGNC	ENSG00000090861				66	0	0	62	7	10.1449
AARS	0	genome.wustl.edu	37	16	70304204	70304204	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	70304204	70304204	G	A	SNP	AARS	ENST00000261772	human	ensembl	74_37	-1	known	silent	c.711	p.S237	1.000	pfam_Ala-tRNA-synth_IIc_N,pfscan_Ala-tRNA-synth_IIc_core,tigrfam_Ala-tRNA-lgiase_IIc	pfam_Ala-tRNA-synth_IIc_N,pfam_tRNA_SAD,pfam_Pesterase_DHHA1,superfamily_Ala-tRNA-ligase_IIc_anticod-bd,superfamily_Thr/Ala-tRNA-synth_IIc_edit,smart_tRNA_SAD,prints_Ala-tRNA-lgiase_IIc,pfscan_Ala-tRNA-synth_IIc_core,tigrfam_Ala-tRNA-lgiase_IIc	-	no_errors	AARS	HGNC	ENSG00000090861				87	0	0	81	6	6.89655
DDX19B	0	genome.wustl.edu	37	16	70350004	70350004	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	70350004	70350004	G	A	SNP	DDX19B	ENST00000288071	human	ensembl	74_37	+1	known	missense	c.293	p.R98Q	0.993	pfscan_RNA_helicase_DEAD_Q_motif	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX19B	HGNC	ENSG00000157349				203	0	0	173	13	6.98925
ST3GAL2	0	genome.wustl.edu	37	16	70429011	70429011	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	70429011	70429011	G	T	SNP	ST3GAL2	ENST00000342907	human	ensembl	74_37	-1	known	missense	c.407	p.P136H	1.000	pfam_Glyco_trans_29,pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST3GAL2	HGNC	ENSG00000157350				161	0	0	156	12	7.14286
FUK	0	genome.wustl.edu	37	16	70503129	70503129	+	Silent	SNP	C	C	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	70503129	70503129	C	G	SNP	FUK	ENST00000378912	human	ensembl	74_37	+1	known	silent	c.954	p.P318	0.725	pfam_Fucokinase	pfam_Fucokinase,pfam_GHMP_kinase_C_dom,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_Trimer_LpxA-like,prints_Galkinase	-	no_errors	FUK	HGNC	ENSG00000157353				117	0	0	116	7	5.69106
SF3B3	0	genome.wustl.edu	37	16	70588357	70588357	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	70588357	70588357	G	A	SNP	SF3B3	ENST00000302516	human	ensembl	74_37	+1	known	missense	c.1411	p.D471N	1.000	NULL	pfam_Cleavage/polyA-sp_fac_asu_C,superfamily_WD40_repeat_dom	-	no_errors	SF3B3	HGNC	ENSG00000189091				169	0	0	107	10	8.54701
SF3B3	0	genome.wustl.edu	37	16	70590845	70590845	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	70590845	70590845	T	C	SNP	SF3B3	ENST00000302516	human	ensembl	74_37	+1	known	silent	c.1923	p.C641	0.998	superfamily_WD40_repeat_dom	pfam_Cleavage/polyA-sp_fac_asu_C,superfamily_WD40_repeat_dom	-	no_errors	SF3B3	HGNC	ENSG00000189091				87	0	0	75	4	5.06329
HYDIN	0	genome.wustl.edu	37	16	70871608	70871608	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	70871608	70871608	C	A	SNP	HYDIN	ENST00000393567	human	ensembl	74_37	-1	putative	missense	c.13227	p.K4409N	0.998	NULL	superfamily_P-loop_NTPase,superfamily_PapD-like	-	no_errors	HYDIN	HGNC	ENSG00000157423				90	0	0	59	6	9.23077
HYDIN	0	genome.wustl.edu	37	16	71218785	71218785	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	71218785	71218785	C	T	SNP	HYDIN	ENST00000448089	human	ensembl	74_37	-1	known	missense	c.244	p.E82K	1.000	NULL	superfamily_PapD-like	-	no_errors	HYDIN	HGNC	ENSG00000157423				189	0	0	138	11	7.38255
TAT	0	genome.wustl.edu	37	16	71605530	71605530	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	71605530	71605530	A	G	SNP	TAT	ENST00000355962	human	ensembl	74_37	-1	known	silent	c.738	p.A246	0.958	pfam_Aminotransferase_I/II,pfam_ArAA_b-elim_lyase/Thr_aldolase,pfam_DegT/StrS_aminotransferase,superfamily_PyrdxlP-dep_Trfase,pirsf_Tyrosine_transaminase,tigrfam_Tyrosine_aminoTrfase,tigrfam_TyrNic_aminoTrfase	pfam_Aminotransferase_I/II,pfam_Tyr_aminoTrfase_ubiquitination,pfam_ArAA_b-elim_lyase/Thr_aldolase,pfam_Aminotrans_V/Cys_dSase,pfam_DegT/StrS_aminotransferase,superfamily_PyrdxlP-dep_Trfase,pirsf_Tyrosine_transaminase,tigrfam_Tyrosine_aminoTrfase,tigrfam_TyrNic_aminoTrfase	-	no_errors	TAT	HGNC	ENSG00000198650				95	0	0	90	5	5.26316
MARVELD3	0	genome.wustl.edu	37	16	71663380	71663380	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	71663380	71663380	A	G	SNP	MARVELD3	ENST00000299952	human	ensembl	74_37	+1	known	missense	c.578	p.Y193C	1.000	NULL	NULL	-	no_errors	MARVELD3	HGNC	ENSG00000140832				122	0	0	120	9	6.97674
PHLPP2	0	genome.wustl.edu	37	16	71683225	71683225	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	71683225	71683225	C	T	SNP	PHLPP2	ENST00000356272	human	ensembl	74_37	-1	known	silent	c.3540	p.E1180	0.927	NULL	pfam_PP2C-like_dom,pfam_Leu-rich_rpt,superfamily_PP2C-like_dom,smart_Leu-rich_rpt_typical-subtyp,smart_PP2C-like_dom	-	no_errors	PHLPP2	HGNC	ENSG00000040199				80	0	0	69	6	8
IST1	0	genome.wustl.edu	37	16	71950395	71950395	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	71950395	71950395	T	A	SNP	IST1	ENST00000535424	human	ensembl	74_37	+1	known	missense	c.158	p.I53N	1.000	pfam_DUF292_euk	pfam_DUF292_euk	-	no_errors	IST1	HGNC	ENSG00000182149				54	0	0	58	7	10.7692
HPR	0	genome.wustl.edu	37	16	72110871	72110871	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	72110871	72110871	C	T	SNP	HPR	ENST00000228226	human	ensembl	74_37	+1	known	missense	c.1049	p.A350V	0.991	pirsf_Haptoglobin,pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pirsf_Haptoglobin,pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,superfamily_Sushi_SCR_CCP,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_Peptidase_S1	-	no_errors	HPR	HGNC	ENSG00000261701				151	0	0	97	21	17.7966
DHX38	0	genome.wustl.edu	37	16	72131586	72131586	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	72131586	72131586	T	C	SNP	DHX38	ENST00000268482	human	ensembl	74_37	+1	known	silent	c.522	p.D174	0.940	NULL	pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX38	HGNC	ENSG00000140829				30	0	0	18	3	14.2857
PMFBP1	0	genome.wustl.edu	37	16	72153953	72153953	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	72153953	72153953	T	C	SNP	PMFBP1	ENST00000537465	human	ensembl	74_37	-1	known	missense	c.2819	p.E940G	1.000	NULL	NULL	-	no_errors	PMFBP1	HGNC	ENSG00000118557				173	0	0	169	11	6.11111
ZFHX3	0	genome.wustl.edu	37	16	72821778	72821778	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	72821778	72821778	A	G	SNP	ZFHX3	ENST00000268489	human	ensembl	74_37	-1	known	missense	c.10397	p.V3466A	1.000	smart_Znf_C2H2-like	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX3	HGNC	ENSG00000140836				117	0	0	83	11	11.7021
ZFHX3	0	genome.wustl.edu	37	16	72828653	72828653	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	72828653	72828653	C	T	SNP	ZFHX3	ENST00000268489	human	ensembl	74_37	-1	known	missense	c.7928	p.R2643H	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX3	HGNC	ENSG00000140836				445	0	0	353	74	17.3302
ZFHX3	0	genome.wustl.edu	37	16	72830751	72830751	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	72830751	72830751	C	T	SNP	ZFHX3	ENST00000268489	human	ensembl	74_37	-1	known	missense	c.5830	p.A1944T	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX3	HGNC	ENSG00000140836				110	0	0	107	6	5.30973
ZFHX3	0	genome.wustl.edu	37	16	72831787	72831787	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	72831787	72831787	A	G	SNP	ZFHX3	ENST00000268489	human	ensembl	74_37	-1	known	silent	c.4794	p.C1598	1.000	smart_Znf_U1,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX3	HGNC	ENSG00000140836				117	0	0	96	7	6.79612
ZFHX3	0	genome.wustl.edu	37	16	72832395	72832395	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	72832395	72832395	G	A	SNP	ZFHX3	ENST00000268489	human	ensembl	74_37	-1	known	missense	c.4186	p.R1396C	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX3	HGNC	ENSG00000140836				89	0	0	72	9	11.1111
ZFHX3	0	genome.wustl.edu	37	16	72993166	72993166	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	72993166	72993166	G	T	SNP	ZFHX3	ENST00000268489	human	ensembl	74_37	-1	known	nonsense	c.879	p.Y293*	1.000	smart_Znf_C2H2-like	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX3	HGNC	ENSG00000140836				102	1	0.970874	90	7	7.21649
PSMD7	0	genome.wustl.edu	37	16	74334090	74334090	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	74334090	74334090	C	T	SNP	PSMD7	ENST00000219313	human	ensembl	74_37	+1	known	missense	c.152	p.S51L	1.000	pfam_JAB_MPN_dom,smart_JAB_MPN_dom	pfam_JAB_MPN_dom,smart_JAB_MPN_dom	-	no_errors	PSMD7	HGNC	ENSG00000103035				51	0	0	37	7	15.9091
GLG1	0	genome.wustl.edu	37	16	74503938	74503938	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	74503938	74503938	A	G	SNP	GLG1	ENST00000205061	human	ensembl	74_37	-1	known	missense	c.2263	p.F755L	1.000	pfam_Cys-rich_GLG1_repeat	pfam_Cys-rich_GLG1_repeat	-	no_errors	GLG1	HGNC	ENSG00000090863				117	0	0	95	6	5.94059
MLKL	0	genome.wustl.edu	37	16	74729205	74729205	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	74729205	74729205	G	A	SNP	MLKL	ENST00000308807	human	ensembl	74_37	-1	known	silent	c.451	p.L151	0.003	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MLKL	HGNC	ENSG00000168404				106	0	0	88	6	6.38298
KARS	0	genome.wustl.edu	37	16	75675553	75675553	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	75675553	75675553	C	T	SNP	KARS	ENST00000319410	human	ensembl	74_37	-1	known	missense	c.215	p.S72N	1.000	NULL	pfam_aa-tRNA-synt_II,pfam_NA-bd_OB_tRNA,superfamily_NA-bd_OB-fold,pfscan_aa-tRNA-synth_II,prints_Lys-tRNA-synth_II_C,prints_Asp/Asn-tRNA-synth_IIb,tigrfam_Lys-tRNA-ligase_II	-	no_errors	KARS	HGNC	ENSG00000065427				94	0	0	98	8	7.54717
CNTNAP4	0	genome.wustl.edu	37	16	76350303	76350303	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	76350303	76350303	C	A	SNP	CNTNAP4	ENST00000476707	human	ensembl	74_37	+1	putative	missense	c.88	p.L30M	0.583	NULL	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP4	HGNC	ENSG00000152910				45	0	0	30	5	14.2857
MON1B	0	genome.wustl.edu	37	16	77227572	77227572	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	77227572	77227572	C	T	SNP	MON1B	ENST00000248248	human	ensembl	74_37	+1	known	missense	c.373	p.R125W	0.908	pfam_Vacuolar_fusion_protein_MON1,prints_Vacuolar_fusion_protein_MON1	pfam_Vacuolar_fusion_protein_MON1,prints_Vacuolar_fusion_protein_MON1	-	no_errors	MON1B	HGNC	ENSG00000103111				64	0	0	61	18	22.7848
MON1B	0	genome.wustl.edu	37	16	77228320	77228320	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	77228320	77228320	G	A	SNP	MON1B	ENST00000248248	human	ensembl	74_37	+1	known	silent	c.564	p.G188	0.579	pfam_Vacuolar_fusion_protein_MON1,prints_Vacuolar_fusion_protein_MON1	pfam_Vacuolar_fusion_protein_MON1,prints_Vacuolar_fusion_protein_MON1	-	no_errors	MON1B	HGNC	ENSG00000103111				77	0	0	109	6	5.21739
MON1B	0	genome.wustl.edu	37	16	77228534	77228534	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	77228534	77228534	G	A	SNP	MON1B	ENST00000248248	human	ensembl	74_37	+1	known	missense	c.778	p.A260T	1.000	pfam_Vacuolar_fusion_protein_MON1,prints_Vacuolar_fusion_protein_MON1	pfam_Vacuolar_fusion_protein_MON1,prints_Vacuolar_fusion_protein_MON1	-	no_errors	MON1B	HGNC	ENSG00000103111				47	0	0	54	7	11.4754
ADAMTS18	0	genome.wustl.edu	37	16	77369677	77369677	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	77369677	77369677	T	C	SNP	ADAMTS18	ENST00000282849	human	ensembl	74_37	-1	known	missense	c.1835	p.Q612R	0.993	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS18	HGNC	ENSG00000140873				239	0	0	224	15	6.27615
ADAMTS18	0	genome.wustl.edu	37	16	77401590	77401590	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	77401590	77401590	A	T	SNP	ADAMTS18	ENST00000282849	human	ensembl	74_37	-1	known	missense	c.526	p.F176I	1.000	pfam_Peptidase_M12B_N	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS18	HGNC	ENSG00000140873				68	0	0	60	6	9.09091
WWOX	0	genome.wustl.edu	37	16	78466602	78466602	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	78466602	78466602	G	A	SNP	WWOX	ENST00000566780	human	ensembl	74_37	+1	known	missense	c.1009	p.V337M	1.000	NULL	pfam_WW_dom,pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom,prints_Glc/ribitol_DH	-	no_errors	WWOX	HGNC	ENSG00000186153				259	1	0.384615	219	12	5.19481
CDYL2	0	genome.wustl.edu	37	16	80718775	80718775	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	80718775	80718775	T	C	SNP	CDYL2	ENST00000570137	human	ensembl	74_37	-1	known	silent	c.276	p.R92	0.994	NULL	pfam_Crotonase_core_superfam,pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow	-	no_errors	CDYL2	HGNC	ENSG00000166446				70	0	0	72	4	5.26316
ATMIN	0	genome.wustl.edu	37	16	81077197	81077197	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	81077197	81077197	G	A	SNP	ATMIN	ENST00000299575	human	ensembl	74_37	+1	known	missense	c.1094	p.S365N	0.293	NULL	smart_Znf_C2H2-like	-	no_errors	ATMIN	HGNC	ENSG00000166454				94	0	0	60	8	11.7647
PKD1L2	0	genome.wustl.edu	37	16	81211477	81211477	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	81211477	81211477	A	G	SNP	PKD1L2	ENST00000337114	human	ensembl	74_37	-1	known	missense	c.2372	p.F791S	0.953	pfam_PKD/REJ-like,pfscan_REJ-like	pfam_Lectin_gal-bd_dom,pfam_C-type_lectin,pfam_PKD/REJ-like,superfamily_C-type_lectin_fold,superfamily_Coatomer/clathrin_app_Ig-like,superfamily_PKD_dom,smart_C-type_lectin,pfscan_C-type_lectin,pfscan_Lectin_gal-bd_dom,pfscan_REJ-like	-	no_errors	PKD1L2	HGNC	ENSG00000166473				75	0	0	81	7	7.95455
CMIP	0	genome.wustl.edu	37	16	81733378	81733378	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	81733378	81733378	C	T	SNP	CMIP	ENST00000537098	human	ensembl	74_37	+1	known	missense	c.1727	p.A576V	1.000	NULL	NULL	-	no_errors	CMIP	HGNC	ENSG00000153815				20	0	0	19	6	24
PLCG2	0	genome.wustl.edu	37	16	81891910	81891910	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	81891910	81891910	A	G	SNP	PLCG2	ENST00000359376	human	ensembl	74_37	+1	known	missense	c.380	p.K127R	0.928	smart_Pleckstrin_homology,pirsf_PLC-gamma,pfscan_Pleckstrin_homology	pfam_PLipase_C_PInositol-sp_X_dom,pfam_SH2,pfam_PLipase_C_Pinositol-sp_Y,pfam_SH3_domain,pfam_C2_dom,pfam_PLipase_C_EF-hand-like,pfam_SH3_2,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_PLipase_C_PInositol-sp_X_dom,smart_SH2,smart_SH3_domain,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,pirsf_PLC-gamma,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C,prints_SH2,prints_SH3_domain	-	no_errors	PLCG2	HGNC	ENSG00000197943				168	0	0	155	13	7.7381
MSLNL	0	genome.wustl.edu	37	16	822937	822937	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	822937	822937	C	T	SNP	MSLNL	ENST00000293892	human	ensembl	74_37	-1	known	missense	c.2248	p.V750I	0.001	pfam_Mesothelin	pfam_Mesothelin	-	no_errors	MSLNL	HGNC	ENSG00000162006				47	0	0	49	11	18.3333
CDH13	0	genome.wustl.edu	37	16	83704437	83704437	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	83704437	83704437	A	G	SNP	CDH13	ENST00000566620	human	ensembl	74_37	+1	known	missense	c.1144	p.N382D	1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH13	HGNC	ENSG00000140945				89	0	0	65	20	23.5294
MLYCD	0	genome.wustl.edu	37	16	83948723	83948723	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	83948723	83948723	A	G	SNP	MLYCD	ENST00000262430	human	ensembl	74_37	+1	known	missense	c.1111	p.I371V	0.000	pfam_Malonyl_CoA_deC	pfam_Malonyl_CoA_deC	-	no_errors	MLYCD	HGNC	ENSG00000103150				143	0	0	122	7	5.42636
OSGIN1	0	genome.wustl.edu	37	16	83998695	83998695	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	83998695	83998695	G	A	SNP	OSGIN1	ENST00000361711	human	ensembl	74_37	+1	known	missense	c.517	p.G173R	0.970	NULL	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD	-	no_errors	OSGIN1	HGNC	ENSG00000140961				89	0	0	97	22	18.4874
SLC38A8	0	genome.wustl.edu	37	16	84050247	84050247	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	84050247	84050247	G	A	SNP	SLC38A8	ENST00000299709	human	ensembl	74_37	-1	known	missense	c.1039	p.R347W	0.992	pfam_AA_transpt_TM	pfam_AA_transpt_TM,pfam_Tryptophan/tyrosine_permease	-	no_errors	SLC38A8	HGNC	ENSG00000166558				52	0	0	43	13	23.2143
MBTPS1	0	genome.wustl.edu	37	16	84101321	84101321	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	84101321	84101321	A	G	SNP	MBTPS1	ENST00000343411	human	ensembl	74_37	-1	known	missense	c.2179	p.Y727H	1.000	NULL	pfam_Peptidase_S8/S53_dom,superfamily_Peptidase_S8/S53_dom,prints_Peptidase_S8_subtilisin-rel	-	no_errors	MBTPS1	HGNC	ENSG00000140943				65	0	0	43	5	10.4167
MBTPS1	0	genome.wustl.edu	37	16	84103626	84103626	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	84103626	84103626	T	C	SNP	MBTPS1	ENST00000343411	human	ensembl	74_37	-1	known	silent	c.1800	p.E600	0.984	NULL	pfam_Peptidase_S8/S53_dom,superfamily_Peptidase_S8/S53_dom,prints_Peptidase_S8_subtilisin-rel	-	no_errors	MBTPS1	HGNC	ENSG00000140943				186	0	0	157	14	8.18713
TAF1C	0	genome.wustl.edu	37	16	84214743	84214743	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	84214743	84214743	G	A	SNP	TAF1C	ENST00000378541	human	ensembl	74_37	-1	known	missense	c.1292	p.S431L	0.167	NULL	superfamily_WD40_repeat_dom	-	no_errors	TAF1C	HGNC	ENSG00000103168				49	0	0	51	10	16.3934
WFDC1	0	genome.wustl.edu	37	16	84351925	84351925	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	84351925	84351925	G	T	SNP	WFDC1	ENST00000219454	human	ensembl	74_37	+1	known	missense	c.385	p.G129C	1.000	NULL	pfam_WAP-type_4-diS_core,superfamily_WAP-type_4-diS_core,smart_WAP-type_4-diS_core	-	no_errors	WFDC1	HGNC	ENSG00000103175				46	0	0	42	8	16
ATP2C2	0	genome.wustl.edu	37	16	84474490	84474490	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	84474490	84474490	G	T	SNP	ATP2C2	ENST00000262429	human	ensembl	74_37	+1	known	missense	c.1237	p.G413W	0.971	pfam_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Ca-transp_PMR1	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_PMR1,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP2C2	HGNC	ENSG00000064270				78	0	0	59	10	14.4928
ZDHHC7	0	genome.wustl.edu	37	16	85024046	85024046	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	85024046	85024046	T	C	SNP	ZDHHC7	ENST00000344861	human	ensembl	74_37	-1	known	missense	c.179	p.Y60C	1.000	NULL	pfam_Znf_DHHC_palmitoyltrfase,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC7	HGNC	ENSG00000153786				32	0	0	29	3	9.375
FOXF1	0	genome.wustl.edu	37	16	86545019	86545019	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	86545019	86545019	G	A	SNP	FOXF1	ENST00000262426	human	ensembl	74_37	+1	known	missense	c.844	p.A282T	0.955	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXF1	HGNC	ENSG00000103241				12	0	0	8	5	38.4615
FOXF1	0	genome.wustl.edu	37	16	86546570	86546570	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	86546570	86546570	A	C	SNP	FOXF1	ENST00000262426	human	ensembl	74_37	+1	known	missense	c.1019	p.D340A	1.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXF1	HGNC	ENSG00000103241				48	0	0	41	3	6.81818
FOXC2	0	genome.wustl.edu	37	16	86601011	86601011	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	86601011	86601011	T	C	SNP	FOXC2	ENST00000320354	human	ensembl	74_37	+1	known	missense	c.70	p.Y24H	1.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXC2	HGNC	ENSG00000176692				61	0	0	38	7	15.5556
FOXL1	0	genome.wustl.edu	37	16	86612547	86612547	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	86612547	86612547	A	G	SNP	FOXL1	ENST00000320241	human	ensembl	74_37	+1	known	missense	c.218	p.N73S	1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXL1	HGNC	ENSG00000176678				107	0	0	107	9	7.75862
METTL22	0	genome.wustl.edu	37	16	8735041	8735041	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	8735041	8735041	G	T	SNP	METTL22	ENST00000381920	human	ensembl	74_37	+1	known	missense	c.826	p.D276Y	1.000	pfam_Nicotinamide_N-MeTfrase-like	pfam_Nicotinamide_N-MeTfrase-like	-	no_errors	METTL22	HGNC	ENSG00000067365				63	0	0	35	5	12.5
JPH3	0	genome.wustl.edu	37	16	87678420	87678420	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	87678420	87678420	C	T	SNP	JPH3	ENST00000284262	human	ensembl	74_37	+1	known	silent	c.939	p.G313	0.995	pirsf_Junctophilin,pfam_MORN,smart_MORN	pirsf_Junctophilin,pfam_MORN,smart_MORN	-	no_errors	JPH3	HGNC	ENSG00000154118				41	0	0	36	9	20
ZC3H18	0	genome.wustl.edu	37	16	88697554	88697554	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	88697554	88697554	G	A	SNP	ZC3H18	ENST00000301011	human	ensembl	74_37	+1	known	silent	c.2709	p.T903	0.025	NULL	smart_Znf_CCCH	-	no_errors	ZC3H18	HGNC	ENSG00000158545				45	0	0	38	14	26.9231
TRAPPC2L	0	genome.wustl.edu	37	16	88923569	88923569	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	88923569	88923569	G	A	SNP	TRAPPC2L	ENST00000301021	human	ensembl	74_37	+1	known	missense	c.11	p.C4Y	1.000	superfamily_Longin-like_dom	pfam_Sedlin,pfam_Sybindin,superfamily_Longin-like_dom	-	no_errors	TRAPPC2L	HGNC	ENSG00000167515				20	0	0	17	3	15
PMM2	0	genome.wustl.edu	37	16	8900242	8900242	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	8900242	8900242	A	G	SNP	PMM2	ENST00000268261	human	ensembl	74_37	+1	known	missense	c.325	p.K109E	0.979	pfam_PMM,pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_HAD-SF_hydro_IIB	pfam_PMM,pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_HAD-SF_hydro_IIB	-	no_errors	PMM2	HGNC	ENSG00000140650				89	0	0	69	11	13.75
ZNF778	0	genome.wustl.edu	37	16	89294580	89294580	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	89294580	89294580	A	G	SNP	ZNF778	ENST00000433976	human	ensembl	74_37	+1	known	silent	c.1800	p.T600	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF778	HGNC	ENSG00000170100				139	0	0	117	9	7.14286
SPATA2L	0	genome.wustl.edu	37	16	89764596	89764596	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	89764596	89764596	C	A	SNP	SPATA2L	ENST00000289805	human	ensembl	74_37	-1	known	missense	c.421	p.A141S	0.000	NULL	NULL	-	no_errors	SPATA2L	HGNC	ENSG00000158792				78	0	0	103	15	12.7119
VPS9D1	0	genome.wustl.edu	37	16	89783004	89783004	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	89783004	89783004	A	G	SNP	VPS9D1	ENST00000389386	human	ensembl	74_37	-1	known	silent	c.297	p.P99	0.000	NULL	pfam_VPS9,smart_VPS9_subgr,pfscan_VPS9	-	no_errors	VPS9D1	HGNC	ENSG00000075399				151	0	0	191	12	5.91133
FANCA	0	genome.wustl.edu	37	16	89836392	89836392	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	89836392	89836392	G	A	SNP	FANCA	ENST00000389301	human	ensembl	74_37	-1	known	missense	c.2357	p.A786V	0.983	NULL	pfam_Fanconia,prints_Fanconia	-	no_errors	FANCA	HGNC	ENSG00000187741				39	0	0	27	8	22.8571
FANCA	0	genome.wustl.edu	37	16	89865524	89865524	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	89865524	89865524	G	A	SNP	FANCA	ENST00000563673	human	ensembl	74_37	-1	putative	missense	c.943	p.P315S	0.000	NULL	NULL	-	no_errors	FANCA	HGNC	ENSG00000187741				140	0	0	139	15	9.74026
USP7	0	genome.wustl.edu	37	16	8988948	8988948	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	8988948	8988948	C	T	SNP	USP7	ENST00000344836	human	ensembl	74_37	-1	known	silent	c.2979	p.A993	0.000	NULL	pfam_Peptidase_C19/C67,pfam_MATH,pfam_USP7_ICP0-binding_dom,superfamily_TRAF-like,smart_MATH,pfscan_MATH,pfscan_Peptidase_C19/C67	-	no_errors	USP7	HGNC	ENSG00000187555				262	0	0	242	22	8.33333
TCF25	0	genome.wustl.edu	37	16	89977618	89977618	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	89977618	89977618	A	G	SNP	TCF25	ENST00000263346	human	ensembl	74_37	+1	known	missense	c.2003	p.D668G	0.886	NULL	pfam_TCF25	-	no_errors	TCF25	HGNC	ENSG00000141002				79	0	0	62	12	16.2162
DEF8	0	genome.wustl.edu	37	16	90029779	90029779	+	Silent	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	90029779	90029779	C	A	SNP	DEF8	ENST00000268676	human	ensembl	74_37	+1	known	silent	c.1113	p.R371	1.000	NULL	pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	DEF8	HGNC	ENSG00000140995				49	0	0	40	14	25.9259
GAS8	0	genome.wustl.edu	37	16	90099232	90099232	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	90099232	90099232	G	A	SNP	GAS8	ENST00000268699	human	ensembl	74_37	+1	known	missense	c.395	p.R132H	0.274	NULL	NULL	-	no_errors	GAS8	HGNC	ENSG00000141013				44	0	0	37	10	21.2766
MYH13	0	genome.wustl.edu	37	17	10227392	10227392	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	10227392	10227392	G	T	SNP	MYH13	ENST00000252172	human	ensembl	74_37	-1	known	missense	c.2881	p.L961M	1.000	NULL	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH13	HGNC	ENSG00000006788				67	0	0	69	6	8
MYH13	0	genome.wustl.edu	37	17	10261071	10261071	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	10261071	10261071	T	C	SNP	MYH13	ENST00000252172	human	ensembl	74_37	-1	known	missense	c.719	p.N240S	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH13	HGNC	ENSG00000006788				132	0	0	81	7	7.95455
MYH8	0	genome.wustl.edu	37	17	10322295	10322295	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	10322295	10322295	T	C	SNP	MYH8	ENST00000403437	human	ensembl	74_37	-1	known	missense	c.263	p.D88G	1.000	superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_t-SNARE,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH8	HGNC	ENSG00000133020				144	0	0	96	14	12.7273
MYH8	0	genome.wustl.edu	37	17	10323492	10323492	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	10323492	10323492	T	C	SNP	MYH8	ENST00000403437	human	ensembl	74_37	-1	known	missense	c.53	p.Y18C	0.999	NULL	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_t-SNARE,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH8	HGNC	ENSG00000133020				131	0	0	107	10	8.54701
MYH4	0	genome.wustl.edu	37	17	10358102	10358102	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	10358102	10358102	T	A	SNP	MYH4	ENST00000255381	human	ensembl	74_37	-1	known	missense	c.2461	p.N821Y	1.000	superfamily_P-loop_NTPase	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH4	HGNC	ENSG00000264424				126	0	0	96	12	11.1111
MYH1	0	genome.wustl.edu	37	17	10398373	10398373	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	10398373	10398373	C	T	SNP	MYH1	ENST00000226207	human	ensembl	74_37	-1	known	missense	c.5341	p.A1781T	1.000	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH1	HGNC	ENSG00000109061				234	0	0	191	16	7.72947
MYH1	0	genome.wustl.edu	37	17	10402051	10402051	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	10402051	10402051	T	C	SNP	MYH1	ENST00000226207	human	ensembl	74_37	-1	known	missense	c.4073	p.K1358R	1.000	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH1	HGNC	ENSG00000109061				141	0	0	123	11	8.20896
MYH2	0	genome.wustl.edu	37	17	10448771	10448771	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	10448771	10448771	G	T	SNP	MYH2	ENST00000245503	human	ensembl	74_37	-1	known	missense	c.397	p.P133T	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_Ribosomal_L29,superfamily_t-SNARE,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH2	HGNC	ENSG00000125414				155	1	0.641026	124	8	6.06061
MYH3	0	genome.wustl.edu	37	17	10535851	10535851	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	10535851	10535851	G	T	SNP	MYH3	ENST00000226209	human	ensembl	74_37	-1	known	missense	c.4898	p.A1633D	1.000	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH3	HGNC	ENSG00000109063				192	0	0	203	11	5.14019
MYH3	0	genome.wustl.edu	37	17	10539158	10539158	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	10539158	10539158	C	T	SNP	MYH3	ENST00000226209	human	ensembl	74_37	-1	known	missense	c.3869	p.R1290H	1.000	pfam_Myosin_tail,superfamily_Prefoldin	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH3	HGNC	ENSG00000109063				160	0	0	121	7	5.46875
PIRT	0	genome.wustl.edu	37	17	10728777	10728777	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	10728777	10728777	G	A	SNP	PIRT	ENST00000580256	human	ensembl	74_37	-1	known	silent	c.186	p.G62	0.001	NULL	NULL	-	no_errors	PIRT	HGNC	ENSG00000233670				45	0	0	37	11	22.9167
DNAH9	0	genome.wustl.edu	37	17	11554567	11554567	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	11554567	11554567	T	C	SNP	DNAH9	ENST00000262442	human	ensembl	74_37	+1	known	missense	c.2279	p.L760S	1.000	pfam_Dynein_heavy_dom-1	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH9	HGNC	ENSG00000007174				134	0	0	100	11	9.90991
DNAH9	0	genome.wustl.edu	37	17	11572398	11572398	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	11572398	11572398	A	G	SNP	DNAH9	ENST00000262442	human	ensembl	74_37	+1	known	missense	c.2749	p.T917A	0.045	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH9	HGNC	ENSG00000007174				158	0	0	126	36	22.2222
HS3ST3B1	0	genome.wustl.edu	37	17	14204913	14204913	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	14204913	14204913	G	A	SNP	HS3ST3B1	ENST00000360954	human	ensembl	74_37	+1	known	silent	c.78	p.P26	1.000	NULL	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	HS3ST3B1	HGNC	ENSG00000125430				43	0	0	32	7	17.9487
ENSG00000205325	0	genome.wustl.edu	37	17	14683188	14683188	+	RNA	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	14683188	14683188	A	G	SNP	ENSG00000205325	ENST00000379640	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	AC005863.1	Clone_based_vega_gene	ENSG00000205325				127	0	0	92	11	10.6796
TVP23C	0	genome.wustl.edu	37	17	15441469	15441469	+	Splice_Site	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	15441469	15441469	C	T	SNP	TVP23C	ENST00000523573	human	ensembl	74_37	-1	known	splice_site	c.162-2	e5-2	0.998	-	-	-	no_errors	TVP23C	HGNC	ENSG00000175106				76	0	0	74	46	38.3333
TRIM16	0	genome.wustl.edu	37	17	15539514	15539514	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	15539514	15539514	C	T	SNP	TRIM16	ENST00000336708	human	ensembl	74_37	-1	known	missense	c.685	p.A229T	1.000	NULL	pfam_SPRY_rcpt,pfam_Znf_B-box,superfamily_ConA-like_lec_gl_sf,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,prints_Butyrophylin	-	no_errors	TRIM16	HGNC	ENSG00000221926				92	0	0	72	6	7.69231
PRPF8	0	genome.wustl.edu	37	17	1576438	1576438	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	1576438	1576438	C	T	SNP	PRPF8	ENST00000304992	human	ensembl	74_37	-1	known	missense	c.3711	p.M1237I	1.000	pfam_Prp8_U5-snRNA-bd	pfam_PROCN,pfam_PRP8_domainIV,pfam_Prp8_U6-snRNA-bd,pfam_PRO8NT,pfam_Prp8_U5-snRNA-bd,pfam_PROCT,pfam_RRM_spliceosomal_PrP8,pfam_JAB_MPN_dom,superfamily_Cupredoxin,superfamily_Histone-fold,smart_JAB_MPN_dom	-	no_errors	PRPF8	HGNC	ENSG00000174231				84	0	0	60	5	7.69231
PRPF8	0	genome.wustl.edu	37	17	1579343	1579343	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	1579343	1579343	T	C	SNP	PRPF8	ENST00000304992	human	ensembl	74_37	-1	known	missense	c.2558	p.K853R	1.000	NULL	pfam_PROCN,pfam_PRP8_domainIV,pfam_Prp8_U6-snRNA-bd,pfam_PRO8NT,pfam_Prp8_U5-snRNA-bd,pfam_PROCT,pfam_RRM_spliceosomal_PrP8,pfam_JAB_MPN_dom,superfamily_Cupredoxin,superfamily_Histone-fold,smart_JAB_MPN_dom	-	no_errors	PRPF8	HGNC	ENSG00000174231				57	0	0	69	6	8
TTC19	0	genome.wustl.edu	37	17	15906111	15906111	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	15906111	15906111	C	T	SNP	TTC19	ENST00000486880	human	ensembl	74_37	+1	known	missense	c.791	p.A264V	1.000	NULL	smart_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC19	HGNC	ENSG00000011295				124	0	0	71	9	11.25
NCOR1	0	genome.wustl.edu	37	17	15968182	15968182	+	Splice_Site	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	15968182	15968182	A	G	SNP	NCOR1	ENST00000268712	human	ensembl	74_37	-1	known	splice_site	c.5101+2	e33+2	1.000	-	-	-	no_errors	NCOR1	HGNC	ENSG00000141027				72	0	0	71	4	5.33333
NCOR1	0	genome.wustl.edu	37	17	15971261	15971261	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	15971261	15971261	T	C	SNP	NCOR1	ENST00000268712	human	ensembl	74_37	-1	known	missense	c.4688	p.H1563R	1.000	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR1	HGNC	ENSG00000141027				59	0	0	52	3	5.45455
NCOR1	0	genome.wustl.edu	37	17	16022749	16022749	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	16022749	16022749	C	T	SNP	NCOR1	ENST00000268712	human	ensembl	74_37	-1	known	missense	c.1903	p.V635I	1.000	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR1	HGNC	ENSG00000141027				214	1	0.465116	134	11	7.58621
NCOR1	0	genome.wustl.edu	37	17	16024445	16024445	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	16024445	16024445	G	A	SNP	NCOR1	ENST00000268712	human	ensembl	74_37	-1	known	silent	c.1773	p.N591	0.376	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR1	HGNC	ENSG00000141027				114	0	0	121	9	6.92308
NCOR1	0	genome.wustl.edu	37	17	16042375	16042375	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	16042375	16042375	A	G	SNP	NCOR1	ENST00000268712	human	ensembl	74_37	-1	known	silent	c.1299	p.D433	1.000	superfamily_Homeodomain-like	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR1	HGNC	ENSG00000141027				35	0	0	26	2	7.14286
NCOR1	0	genome.wustl.edu	37	17	16075115	16075115	+	Splice_Site	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	16075115	16075115	A	G	SNP	NCOR1	ENST00000268712	human	ensembl	74_37	-1	known	splice_site	c.435+2	e3+2	1.000	-	-	-	no_errors	NCOR1	HGNC	ENSG00000141027				37	0	0	16	4	20
CENPV	0	genome.wustl.edu	37	17	16246220	16246220	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	16246220	16246220	G	A	SNP	CENPV	ENST00000299736	human	ensembl	74_37	-1	known	missense	c.730	p.R244W	1.000	NULL	pfam_GFA/CENP-V,superfamily_Mss4-like	-	no_errors	CENPV	HGNC	ENSG00000166582				58	0	0	54	8	12.9032
TRPV2	0	genome.wustl.edu	37	17	16335120	16335120	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	16335120	16335120	G	A	SNP	TRPV2	ENST00000338560	human	ensembl	74_37	+1	known	missense	c.1610	p.R537H	1.000	tigrfam_TRP_channel	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_TRPV1-4_channel,tigrfam_TRP_channel	-	no_errors	TRPV2	HGNC	ENSG00000187688				58	0	0	51	21	29.1667
FAM211A	0	genome.wustl.edu	37	17	16365661	16365661	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	16365661	16365661	A	G	SNP	FAM211A	ENST00000470794	human	ensembl	74_37	-1	known	missense	c.286	p.Y96H	1.000	NULL	NULL	-	no_errors	FAM211A	HGNC	ENSG00000181350				32	0	0	23	3	11.5385
WDR81	0	genome.wustl.edu	37	17	1640894	1640894	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	1640894	1640894	G	A	SNP	WDR81	ENST00000409644	human	ensembl	74_37	+1	known	missense	c.5741	p.G1914D	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_Kinase-like_dom,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR81	HGNC	ENSG00000167716				44	0	0	46	4	8
ZNF624	0	genome.wustl.edu	37	17	16527226	16527226	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	16527226	16527226	A	T	SNP	ZNF624	ENST00000311331	human	ensembl	74_37	-1	known	missense	c.974	p.I325N	0.974	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF624	HGNC	ENSG00000197566				123	0	0	103	9	8.03571
ZNF624	0	genome.wustl.edu	37	17	16527781	16527781	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	16527781	16527781	T	G	SNP	ZNF624	ENST00000311331	human	ensembl	74_37	-1	known	missense	c.419	p.K140T	0.003	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF624	HGNC	ENSG00000197566				95	0	0	73	5	6.41026
CCDC144A	0	genome.wustl.edu	37	17	16612506	16612506	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	16612506	16612506	C	T	SNP	CCDC144A	ENST00000360524	human	ensembl	74_37	+1	known	missense	c.1135	p.P379S	0.007	NULL	pfam_DUF3496	-	no_errors	CCDC144A	HGNC	ENSG00000170160				224	0	0	140	19	11.9497
KRT16P2	0	genome.wustl.edu	37	17	16735072	16735072	+	RNA	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	16735072	16735072	C	T	SNP	KRT16P2	ENST00000579062	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.073	-	-	-	no_errors	KRT16P2	HGNC	ENSG00000227300				32	0	0	32	3	8.57143
TBC1D27	0	genome.wustl.edu	37	17	16831013	16831013	+	RNA	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	16831013	16831013	C	T	SNP	TBC1D27	ENST00000261651	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TBC1D27	HGNC	ENSG00000128438				22	0	0	24	10	29.4118
SMYD4	0	genome.wustl.edu	37	17	1686415	1686415	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	1686415	1686415	A	G	SNP	SMYD4	ENST00000305513	human	ensembl	74_37	-1	known	silent	c.2175	p.S725	0.998	NULL	pfam_SET_dom,pfam_Znf_MYND,pfscan_SET_dom,pfscan_Znf_MYND	-	no_errors	SMYD4	HGNC	ENSG00000186532				114	0	0	91	7	7.14286
COPS3	0	genome.wustl.edu	37	17	17179427	17179427	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	17179427	17179427	G	A	SNP	COPS3	ENST00000268717	human	ensembl	74_37	-1	known	missense	c.107	p.A36V	1.000	NULL	pfam_PCI_dom,smart_PCI_dom	-	no_errors	COPS3	HGNC	ENSG00000141030				90	0	0	48	23	32.3944
RPH3AL	0	genome.wustl.edu	37	17	177323	177323	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	177323	177323	G	A	SNP	RPH3AL	ENST00000331302	human	ensembl	74_37	-1	known	silent	c.12	p.T4	1.000	pfam_Znf_FYVE-typ	pfam_Znf_FYVE-typ,superfamily_Znf_FYVE_PHD,pfscan_Znf_FYVE-typ,pfscan_Znf_FYVE-rel	-	no_errors	RPH3AL	HGNC	ENSG00000181031				51	0	0	44	3	6.38298
LRRC48	0	genome.wustl.edu	37	17	17887240	17887240	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	17887240	17887240	G	A	SNP	LRRC48	ENST00000313838	human	ensembl	74_37	+1	known	missense	c.259	p.A87T	0.000	NULL	NULL	-	no_errors	LRRC48	HGNC	ENSG00000171962				99	0	0	70	10	12.5
DRG2	0	genome.wustl.edu	37	17	17997252	17997252	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	17997252	17997252	C	T	SNP	DRG2	ENST00000225729	human	ensembl	74_37	+1	known	missense	c.190	p.R64C	1.000	pfam_Fe2_transport_prot_B_N,superfamily_P-loop_NTPase,tigrfam_Small_GTP-bd_dom	pfam_TGS,pfam_GTP_binding_domain,pfam_Fe2_transport_prot_B_N,superfamily_P-loop_NTPase,superfamily_TGS-like,prints_GTP_binding_domain,tigrfam_Small_GTP-bd_dom	-	no_errors	DRG2	HGNC	ENSG00000108591				86	0	0	62	8	11.4286
MYO15A	0	genome.wustl.edu	37	17	18023508	18023508	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	18023508	18023508	A	G	SNP	MYO15A	ENST00000205890	human	ensembl	74_37	+1	known	missense	c.1394	p.K465R	0.394	NULL	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_SH3_2,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_SH3_domain,smart_Band_41_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO15A	HGNC	ENSG00000091536				31	0	0	36	3	7.69231
MYO15A	0	genome.wustl.edu	37	17	18039118	18039118	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	18039118	18039118	G	A	SNP	MYO15A	ENST00000205890	human	ensembl	74_37	+1	known	missense	c.4576	p.A1526T	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_SH3_2,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_SH3_domain,smart_Band_41_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO15A	HGNC	ENSG00000091536				39	0	0	30	7	18.9189
MYO15A	0	genome.wustl.edu	37	17	18082167	18082167	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	18082167	18082167	G	A	SNP	MYO15A	ENST00000205890	human	ensembl	74_37	+1	known	missense	c.10576	p.E3526K	1.000	pfscan_FERM_domain	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_SH3_2,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_SH3_domain,smart_Band_41_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO15A	HGNC	ENSG00000091536				33	0	0	35	6	14.6341
LLGL1	0	genome.wustl.edu	37	17	18143909	18143909	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	18143909	18143909	A	G	SNP	LLGL1	ENST00000316843	human	ensembl	74_37	+1	known	missense	c.2224	p.T742A	1.000	superfamily_WD40_repeat_dom	pfam_LLGL2,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,prints_Lethal2_giant	-	no_errors	LLGL1	HGNC	ENSG00000131899				141	0	0	147	12	7.54717
TOP3A	0	genome.wustl.edu	37	17	18188810	18188810	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	18188810	18188810	T	C	SNP	TOP3A	ENST00000321105	human	ensembl	74_37	-1	known	missense	c.1622	p.H541R	1.000	pfam_Topo_IA_cen,superfamily_Topo_IA_core_domain,smart_Topo_IA_DNA-bd,prints_Topo_IA	pfam_Topo_IA_cen,pfam_Znf_GRF,pfam_Toprim_domain,pfam_Topo_IA_Znf,superfamily_Topo_IA_core_domain,superfamily_Znf_CCHC,smart_Toprim_domain,smart_Topo_IA_2,smart_Topo_IA_DNA-bd,prints_Topo_IA	-	no_errors	TOP3A	HGNC	ENSG00000177302				36	0	0	29	5	14.7059
TOP3A	0	genome.wustl.edu	37	17	18205934	18205934	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	18205934	18205934	G	A	SNP	TOP3A	ENST00000321105	human	ensembl	74_37	-1	known	silent	c.603	p.S201	0.704	pfam_Topo_IA_cen,superfamily_Topo_IA_core_domain,smart_Topo_IA_2	pfam_Topo_IA_cen,pfam_Znf_GRF,pfam_Toprim_domain,pfam_Topo_IA_Znf,superfamily_Topo_IA_core_domain,superfamily_Znf_CCHC,smart_Toprim_domain,smart_Topo_IA_2,smart_Topo_IA_DNA-bd,prints_Topo_IA	-	no_errors	TOP3A	HGNC	ENSG00000177302				74	0	0	53	10	15.873
SHMT1	0	genome.wustl.edu	37	17	18233876	18233876	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	18233876	18233876	G	A	SNP	SHMT1	ENST00000316694	human	ensembl	74_37	-1	known	silent	c.1164	p.T388	1.000	pfam_Ser_HO-MeTrfase,pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase,pirsf_Ser_HO-MeTrfase	pfam_Ser_HO-MeTrfase,pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase,pirsf_Ser_HO-MeTrfase	-	no_errors	SHMT1	HGNC	ENSG00000176974				82	0	0	74	5	6.32911
ZNF286B	0	genome.wustl.edu	37	17	18566378	18566378	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	18566378	18566378	A	G	SNP	ZNF286B	ENST00000545289	human	ensembl	74_37	-1	known	silent	c.441	p.S147	0.047	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF286B	HGNC	ENSG00000249459				84	0	0	48	7	12.7273
TRIM16L	0	genome.wustl.edu	37	17	18638407	18638407	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	18638407	18638407	C	T	SNP	TRIM16L	ENST00000414850	human	ensembl	74_37	+1	novel	missense	c.419	p.A140V	0.921	NULL	NULL	-	no_errors	TRIM16L	HGNC	ENSG00000108448				79	0	0	72	8	10
FAM83G	0	genome.wustl.edu	37	17	18874741	18874741	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	18874741	18874741	G	A	SNP	FAM83G	ENST00000345041	human	ensembl	74_37	-1	known	silent	c.2403	p.G801	0.000	NULL	pfam_DUF1669	-	no_errors	FAM83G	HGNC	ENSG00000188522				106	0	0	132	15	10.2041
FAM83G	0	genome.wustl.edu	37	17	18881506	18881506	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	18881506	18881506	G	A	SNP	FAM83G	ENST00000345041	human	ensembl	74_37	-1	known	silent	c.1473	p.N491	0.000	NULL	pfam_DUF1669	-	no_errors	FAM83G	HGNC	ENSG00000188522				45	0	0	34	6	15
EPN2	0	genome.wustl.edu	37	17	19237382	19237382	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	19237382	19237382	C	T	SNP	EPN2	ENST00000314728	human	ensembl	74_37	+1	known	missense	c.1741	p.P581S	0.419	NULL	pfam_Epsin_dom_N,pfam_ANTH_dom,superfamily_ENTH_VHS,smart_Epsin-like_N,smart_Ubiquitin-int_motif,pfscan_Epsin-like_N,pfscan_Ubiquitin-int_motif	-	no_errors	EPN2	HGNC	ENSG00000072134				22	0	0	14	3	17.6471
MAPK7	0	genome.wustl.edu	37	17	19284296	19284296	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	19284296	19284296	G	A	SNP	MAPK7	ENST00000308406	human	ensembl	74_37	+1	known	silent	c.774	p.R258	0.993	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAPK7	HGNC	ENSG00000166484				49	0	0	30	4	11.7647
RNF112	0	genome.wustl.edu	37	17	19319055	19319055	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	19319055	19319055	T	A	SNP	RNF112	ENST00000461366	human	ensembl	74_37	+1	novel	missense	c.1463	p.V488D	0.037	NULL	pfam_Guanylate-bd_N,superfamily_P-loop_NTPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF112	HGNC	ENSG00000128482				35	0	0	38	7	15.5556
SLC47A1	0	genome.wustl.edu	37	17	19470491	19470491	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	19470491	19470491	G	A	SNP	SLC47A1	ENST00000395585	human	ensembl	74_37	+1	known	missense	c.1259	p.G420D	0.983	pfam_MATE,tigrfam_MATE	pfam_MATE,tigrfam_MATE	-	no_errors	SLC47A1	HGNC	ENSG00000142494				195	0	0	195	17	8.01887
ULK2	0	genome.wustl.edu	37	17	19679710	19679710	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	19679710	19679710	A	G	SNP	ULK2	ENST00000361658	human	ensembl	74_37	-1	known	silent	c.3063	p.S1021	1.000	pfam_Ser/Thr_kinase_C,pirsf_Ser/Thr_kin_STPK_Ulk-1/2	pfam_Prot_kinase_dom,pfam_Ser/Thr_kinase_C,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,pfam_RIO-like_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ser/Thr_kin_STPK_Ulk-1/2,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	ULK2	HGNC	ENSG00000083290				17	0	0	26	5	16.129
ULK2	0	genome.wustl.edu	37	17	19705207	19705207	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	19705207	19705207	T	C	SNP	ULK2	ENST00000361658	human	ensembl	74_37	-1	known	missense	c.1324	p.S442G	1.000	pirsf_Ser/Thr_kin_STPK_Ulk-1/2	pfam_Prot_kinase_dom,pfam_Ser/Thr_kinase_C,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,pfam_RIO-like_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ser/Thr_kin_STPK_Ulk-1/2,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	ULK2	HGNC	ENSG00000083290				199	0	0	181	12	6.21762
AKAP10	0	genome.wustl.edu	37	17	19827780	19827780	+	Silent	SNP	C	C	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	19827780	19827780	C	G	SNP	AKAP10	ENST00000225737	human	ensembl	74_37	-1	known	silent	c.1692	p.A564	0.975	NULL	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam	-	no_errors	AKAP10	HGNC	ENSG00000108599				45	0	0	32	5	13.5135
SPECC1	0	genome.wustl.edu	37	17	20135555	20135555	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	20135555	20135555	A	T	SNP	SPECC1	ENST00000261503	human	ensembl	74_37	+1	known	missense	c.2188	p.T730S	1.000	NULL	pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	SPECC1	HGNC	ENSG00000128487				159	0	0	127	8	5.92593
KRT16P3	0	genome.wustl.edu	37	17	20406434	20406434	+	RNA	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	20406434	20406434	C	T	SNP	KRT16P3	ENST00000580113	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.889	-	-	-	no_errors	KRT16P3	HGNC	ENSG00000214822				43	0	0	39	4	9.30233
CCDC144NL	0	genome.wustl.edu	37	17	20799218	20799218	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	20799218	20799218	T	C	SNP	CCDC144NL	ENST00000327925	human	ensembl	74_37	-1	known	missense	c.116	p.D39G	0.002	NULL	NULL	-	no_errors	CCDC144NL	HGNC	ENSG00000205212				53	0	0	64	8	11.1111
MAP2K3	0	genome.wustl.edu	37	17	21204191	21204191	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	21204191	21204191	C	T	SNP	MAP2K3	ENST00000342679	human	ensembl	74_37	+1	known	silent	c.285	p.I95	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP2K3	HGNC	ENSG00000034152				63	0	0	64	4	5.88235
SGSM2	0	genome.wustl.edu	37	17	2266328	2266328	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	2266328	2266328	A	G	SNP	SGSM2	ENST00000268989	human	ensembl	74_37	+1	known	missense	c.572	p.H191R	1.000	pfscan_Run	pfam_Run,pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Run,smart_Rab-GTPase-TBC_dom,pfscan_Run,pfscan_Rab-GTPase-TBC_dom	-	no_errors	SGSM2	HGNC	ENSG00000141258				48	0	0	55	3	5.17241
METTL16	0	genome.wustl.edu	37	17	2323876	2323876	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	2323876	2323876	T	C	SNP	METTL16	ENST00000263092	human	ensembl	74_37	-1	known	silent	c.1077	p.R359	0.992	pirsf_S-AdoMet-dep_MeTrfase_Mett10D	pfam_rRNA_lsu_MeTfrase_F-like,pirsf_S-AdoMet-dep_MeTrfase_Mett10D	-	no_errors	METTL16	HGNC	ENSG00000127804				136	0	0	105	7	6.25
CLUH	0	genome.wustl.edu	37	17	2604780	2604780	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	2604780	2604780	C	T	SNP	CLUH	ENST00000435359	human	ensembl	74_37	-1	known	missense	c.665	p.G222E	1.000	superfamily_GSKIP_dom	superfamily_GSKIP_dom	-	no_errors	CLUH	HGNC	ENSG00000132361				36	0	0	31	4	11.4286
CLUH	0	genome.wustl.edu	37	17	2605316	2605316	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	2605316	2605316	G	A	SNP	CLUH	ENST00000435359	human	ensembl	74_37	-1	known	missense	c.397	p.R133C	1.000	NULL	superfamily_GSKIP_dom	-	no_errors	CLUH	HGNC	ENSG00000132361				24	0	0	25	6	19.3548
NLK	0	genome.wustl.edu	37	17	26449711	26449711	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	26449711	26449711	A	G	SNP	NLK	ENST00000407008	human	ensembl	74_37	+1	known	missense	c.541	p.R181G	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	NLK	HGNC	ENSG00000087095				149	0	0	104	11	9.56522
KIAA0100	0	genome.wustl.edu	37	17	26966990	26966990	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	26966990	26966990	T	C	SNP	KIAA0100	ENST00000528896	human	ensembl	74_37	-1	known	missense	c.944	p.D315G	1.000	pfam_FMP27_N	pfam_FMP27_C,pfam_FMP27_N,pfam_FMP27_GFWDK_dom	-	no_errors	KIAA0100	HGNC	ENSG00000007202				111	0	0	100	9	8.25688
KIAA0100	0	genome.wustl.edu	37	17	26970214	26970214	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	26970214	26970214	A	C	SNP	KIAA0100	ENST00000528896	human	ensembl	74_37	-1	known	missense	c.364	p.F122V	0.998	pfam_FMP27_N	pfam_FMP27_C,pfam_FMP27_N,pfam_FMP27_GFWDK_dom	-	no_errors	KIAA0100	HGNC	ENSG00000007202				114	0	0	83	16	16.1616
NEK8	0	genome.wustl.edu	37	17	27061177	27061177	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	27061177	27061177	C	T	SNP	NEK8	ENST00000268766	human	ensembl	74_37	+1	known	missense	c.224	p.A75V	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Reg_chr_condens,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_RCC1/BLIP-II,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Reg_chr_condens,pfscan_Prot_kinase_dom,prints_Reg_chr_condens,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK8	HGNC	ENSG00000160602				101	0	0	98	7	6.66667
TRAF4	0	genome.wustl.edu	37	17	27076177	27076177	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	27076177	27076177	G	A	SNP	TRAF4	ENST00000262395	human	ensembl	74_37	+1	known	missense	c.995	p.C332Y	1.000	pfam_MATH,superfamily_TRAF-like,smart_MATH,pirsf_TNF_rcpt--assoc_TRAF,pfscan_MATH	pfam_MATH,pfam_Znf_C3HC4_RING-type,superfamily_TRAF-like,smart_Znf_RING,smart_MATH,pirsf_TNF_rcpt--assoc_TRAF,pfscan_MATH,pfscan_Znf_RING,pfscan_Znf_TRAF	-	no_errors	TRAF4	HGNC	ENSG00000076604				88	0	0	57	13	18.5714
TIAF1	0	genome.wustl.edu	37	17	27400906	27400906	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	27400906	27400906	G	A	SNP	TIAF1	ENST00000359450	human	ensembl	74_37	-1	known	silent	c.312	p.D104	0.000	NULL	NULL	-	no_errors	TIAF1	HGNC	ENSG00000221995				180	0	0	159	12	7.01754
MYO18A	0	genome.wustl.edu	37	17	27437573	27437573	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	27437573	27437573	C	T	SNP	MYO18A	ENST00000354329	human	ensembl	74_37	-1	known	missense	c.2968	p.G990S	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_PDZ,superfamily_P-loop_NTPase,superfamily_PDZ,superfamily_Regulat_G_prot_signal_superfam,smart_PDZ,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_PDZ,pfscan_RecA_monomer-monomer_interface,prints_Myosin_head_motor_dom	-	no_errors	MYO18A	HGNC	ENSG00000196535				22	0	0	28	3	9.67742
MYO18A	0	genome.wustl.edu	37	17	27442812	27442812	+	Silent	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	27442812	27442812	C	A	SNP	MYO18A	ENST00000354329	human	ensembl	74_37	-1	known	silent	c.2097	p.A699	0.009	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_PDZ,superfamily_P-loop_NTPase,superfamily_PDZ,superfamily_Regulat_G_prot_signal_superfam,smart_PDZ,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_PDZ,pfscan_RecA_monomer-monomer_interface,prints_Myosin_head_motor_dom	-	no_errors	MYO18A	HGNC	ENSG00000196535				10	0	0	5	3	37.5
TAOK1	0	genome.wustl.edu	37	17	27818822	27818822	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	27818822	27818822	T	C	SNP	TAOK1	ENST00000261716	human	ensembl	74_37	+1	known	missense	c.770	p.F257S	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Homeodomain-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TAOK1	HGNC	ENSG00000160551				186	0	0	121	8	6.20155
TAOK1	0	genome.wustl.edu	37	17	27818871	27818871	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	27818871	27818871	G	T	SNP	TAOK1	ENST00000261716	human	ensembl	74_37	+1	known	missense	c.819	p.E273D	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Homeodomain-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TAOK1	HGNC	ENSG00000160551				178	0	0	130	11	7.80142
ABHD15	0	genome.wustl.edu	37	17	27893504	27893504	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	27893504	27893504	G	T	SNP	ABHD15	ENST00000307201	human	ensembl	74_37	-1	known	missense	c.481	p.L161M	1.000	pirsf_AB-Hydro_YheT	pirsf_AB-Hydro_YheT	-	no_errors	ABHD15	HGNC	ENSG00000168792				30	0	0	24	2	7.69231
ANKRD13B	0	genome.wustl.edu	37	17	27939735	27939735	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	27939735	27939735	G	A	SNP	ANKRD13B	ENST00000394859	human	ensembl	74_37	+1	known	missense	c.1477	p.G493S	1.000	NULL	pfam_ANKRD13,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Ubiquitin-int_motif,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Ubiquitin-int_motif	-	no_errors	ANKRD13B	HGNC	ENSG00000198720				29	0	0	27	3	10
CORO6	0	genome.wustl.edu	37	17	27948258	27948258	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	27948258	27948258	A	T	SNP	CORO6	ENST00000345068	human	ensembl	74_37	-1	known	missense	c.182	p.V61D	1.000	pfam_DUF1899,superfamily_WD40_repeat_dom	pfam_DUF1900,pfam_DUF1899,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CORO6	HGNC	ENSG00000167549				43	0	0	58	6	9.375
SSH2	0	genome.wustl.edu	37	17	27959499	27959499	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	27959499	27959499	G	A	SNP	SSH2	ENST00000269033	human	ensembl	74_37	-1	known	missense	c.2632	p.R878W	1.000	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_DEK_C,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	SSH2	HGNC	ENSG00000141298				190	1	0.52356	137	42	23.4637
SSH2	0	genome.wustl.edu	37	17	27999065	27999065	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	27999065	27999065	C	T	SNP	SSH2	ENST00000269033	human	ensembl	74_37	-1	known	missense	c.616	p.V206M	1.000	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_DEK_C,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	SSH2	HGNC	ENSG00000141298				128	0	0	113	7	5.83333
EFCAB5	0	genome.wustl.edu	37	17	28320295	28320295	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	28320295	28320295	G	A	SNP	EFCAB5	ENST00000394835	human	ensembl	74_37	+1	known	missense	c.880	p.D294N	0.018	NULL	pfscan_EF_hand_dom	-	no_errors	EFCAB5	HGNC	ENSG00000176927				61	0	0	49	3	5.76923
RAP1GAP2	0	genome.wustl.edu	37	17	2867364	2867364	+	Splice_Site	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	2867364	2867364	T	C	SNP	RAP1GAP2	ENST00000254695	human	ensembl	74_37	+1	known	splice_site	c.492+2	e7+2	1.000	-	-	-	no_errors	RAP1GAP2	HGNC	ENSG00000132359				60	0	0	58	9	13.4328
CPD	0	genome.wustl.edu	37	17	28712243	28712243	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	28712243	28712243	A	G	SNP	CPD	ENST00000225719	human	ensembl	74_37	+1	known	missense	c.983	p.Y328C	1.000	pfam_Peptidase_M14,smart_Peptidase_M14	pfam_Peptidase_M14,superfamily_CarboxyPept-like_regulatory,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPD	HGNC	ENSG00000108582				232	0	0	157	14	8.18713
CPD	0	genome.wustl.edu	37	17	28712247	28712247	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	28712247	28712247	T	C	SNP	CPD	ENST00000225719	human	ensembl	74_37	+1	known	silent	c.987	p.D329	0.984	pfam_Peptidase_M14,smart_Peptidase_M14	pfam_Peptidase_M14,superfamily_CarboxyPept-like_regulatory,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPD	HGNC	ENSG00000108582				232	0	0	157	15	8.72093
CPD	0	genome.wustl.edu	37	17	28791791	28791791	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	28791791	28791791	A	G	SNP	CPD	ENST00000225719	human	ensembl	74_37	+1	known	missense	c.4102	p.T1368A	1.000	NULL	pfam_Peptidase_M14,superfamily_CarboxyPept-like_regulatory,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPD	HGNC	ENSG00000108582				186	0	0	149	12	7.45342
GOSR1	0	genome.wustl.edu	37	17	28808272	28808272	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	28808272	28808272	A	G	SNP	GOSR1	ENST00000225724	human	ensembl	74_37	+1	known	missense	c.143	p.D48G	1.000	NULL	NULL	-	no_errors	GOSR1	HGNC	ENSG00000108587				133	0	0	96	6	5.88235
ATAD5	0	genome.wustl.edu	37	17	29161368	29161368	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	29161368	29161368	T	C	SNP	ATAD5	ENST00000321990	human	ensembl	74_37	+1	known	missense	c.269	p.V90A	0.000	NULL	pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	ATAD5	HGNC	ENSG00000176208				115	0	0	91	6	6.18557
ADAP2	0	genome.wustl.edu	37	17	29283258	29283258	+	Splice_Site	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	29283258	29283258	G	T	SNP	ADAP2	ENST00000330889	human	ensembl	74_37	+1	known	splice_site	c.883-1	e10-1	1.000	-	-	-	no_errors	ADAP2	HGNC	ENSG00000184060				42	0	0	43	6	12.2449
LRRC37B	0	genome.wustl.edu	37	17	30348561	30348561	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	30348561	30348561	A	G	SNP	LRRC37B	ENST00000341671	human	ensembl	74_37	+1	known	silent	c.396	p.P132	0.003	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC37B	HGNC	ENSG00000185158				93	0	0	72	19	20.8791
LRRC37B	0	genome.wustl.edu	37	17	30348993	30348993	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	30348993	30348993	G	A	SNP	LRRC37B	ENST00000341671	human	ensembl	74_37	+1	known	silent	c.828	p.Q276	0.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC37B	HGNC	ENSG00000185158				180	0	0	148	24	13.9535
LRRC37B	0	genome.wustl.edu	37	17	30349701	30349701	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	30349701	30349701	G	C	SNP	LRRC37B	ENST00000341671	human	ensembl	74_37	+1	known	missense	c.1536	p.Q512H	0.079	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC37B	HGNC	ENSG00000185158				183	0	0	127	46	26.5896
C17orf75	0	genome.wustl.edu	37	17	30662406	30662406	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	30662406	30662406	A	G	SNP	C17orf75	ENST00000225805	human	ensembl	74_37	-1	known	missense	c.605	p.V202A	0.985	NULL	NULL	-	no_errors	C17orf75	HGNC	ENSG00000108666				223	1	0.446429	162	25	13.369
ZNF207	0	genome.wustl.edu	37	17	30692444	30692444	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	30692444	30692444	A	T	SNP	ZNF207	ENST00000394670	human	ensembl	74_37	+1	known	missense	c.766	p.T256S	0.980	NULL	smart_Znf_C2H2-like	-	no_errors	ZNF207	HGNC	ENSG00000010244				67	0	0	62	11	15.0685
MYO1D	0	genome.wustl.edu	37	17	30986316	30986316	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	30986316	30986316	G	A	SNP	MYO1D	ENST00000318217	human	ensembl	74_37	-1	known	missense	c.2162	p.T721I	1.000	superfamily_P-loop_NTPase,pfscan_IQ_motif_EF-hand-BS	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO1D	HGNC	ENSG00000176658				116	0	0	93	16	14.6789
OR3A1	0	genome.wustl.edu	37	17	3195465	3195465	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	3195465	3195465	G	A	SNP	OR3A1	ENST00000323404	human	ensembl	74_37	-1	known	missense	c.412	p.R138C	0.003	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR3A1	HGNC	ENSG00000180090				121	0	0	96	19	16.5217
CCL8	0	genome.wustl.edu	37	17	32646550	32646550	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	32646550	32646550	G	A	SNP	CCL8	ENST00000394620	human	ensembl	74_37	+1	known	silent	c.30	p.L10	0.697	NULL	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom	-	no_errors	CCL8	HGNC	ENSG00000108700				84	0	0	56	8	12.5
TMEM132E	0	genome.wustl.edu	37	17	32959781	32959781	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	32959781	32959781	A	G	SNP	TMEM132E	ENST00000321639	human	ensembl	74_37	+1	known	missense	c.1271	p.N424S	0.989	NULL	NULL	-	no_errors	TMEM132E	HGNC	ENSG00000181291				99	0	0	106	9	7.82609
CCT6B	0	genome.wustl.edu	37	17	33266714	33266714	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	33266714	33266714	A	G	SNP	CCT6B	ENST00000314144	human	ensembl	74_37	-1	known	silent	c.987	p.G329	1.000	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,superfamily_GroEL-like_apical_dom,tigrfam_Chap_CCT_zeta	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,superfamily_GroEL-like_apical_dom,prints_Chaperone_TCP-1,prints_Chaprnin_Cpn60,tigrfam_Chap_CCT_zeta	-	no_errors	CCT6B	HGNC	ENSG00000132141				30	0	0	29	3	9.375
SLFN5	0	genome.wustl.edu	37	17	33585998	33585998	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	33585998	33585998	A	T	SNP	SLFN5	ENST00000299977	human	ensembl	74_37	+1	known	missense	c.289	p.I97F	0.023	NULL	pfam_ATPase_AAA-4,pfam_DUF2075,superfamily_P-loop_NTPase	-	no_errors	SLFN5	HGNC	ENSG00000166750				162	0	0	145	8	5.22876
SLFN11	0	genome.wustl.edu	37	17	33680045	33680045	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	33680045	33680045	T	C	SNP	SLFN11	ENST00000308377	human	ensembl	74_37	-1	known	missense	c.2036	p.D679G	0.038	pfam_DUF2075,superfamily_P-loop_NTPase	pfam_ATPase_AAA-4,pfam_DUF2075,superfamily_P-loop_NTPase	-	no_errors	SLFN11	HGNC	ENSG00000172716				181	0	0	154	10	6.09756
SLFN11	0	genome.wustl.edu	37	17	33680106	33680106	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	33680106	33680106	A	G	SNP	SLFN11	ENST00000308377	human	ensembl	74_37	-1	known	missense	c.1975	p.F659L	0.000	pfam_DUF2075,superfamily_P-loop_NTPase	pfam_ATPase_AAA-4,pfam_DUF2075,superfamily_P-loop_NTPase	-	no_errors	SLFN11	HGNC	ENSG00000172716				153	0	0	132	16	10.8108
SLFN13	0	genome.wustl.edu	37	17	33772396	33772396	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	33772396	33772396	C	T	SNP	SLFN13	ENST00000285013	human	ensembl	74_37	-1	known	missense	c.304	p.G102R	0.000	NULL	pfam_ATPase_AAA-4,pfam_DUF2075,superfamily_P-loop_NTPase	-	no_errors	SLFN13	HGNC	ENSG00000154760				77	0	0	60	5	7.69231
GAS2L2	0	genome.wustl.edu	37	17	34073121	34073121	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	34073121	34073121	G	A	SNP	GAS2L2	ENST00000254466	human	ensembl	74_37	-1	known	silent	c.1395	p.A465	0.029	NULL	pfam_GAS2_dom,pfam_CH-domain,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_GAS2_dom,pfscan_CH-domain	-	no_errors	GAS2L2	HGNC	ENSG00000132139				129	0	0	118	14	10.6061
C17orf66	0	genome.wustl.edu	37	17	34183196	34183196	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	34183196	34183196	T	C	SNP	C17orf66	ENST00000311880	human	ensembl	74_37	-1	known	missense	c.1259	p.Q420R	0.857	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	C17orf66	HGNC	ENSG00000172653				102	0	0	92	7	7.07071
TRPV3	0	genome.wustl.edu	37	17	3422073	3422073	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	3422073	3422073	C	T	SNP	TRPV3	ENST00000301365	human	ensembl	74_37	-1	known	missense	c.1882	p.A628T	0.660	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_TRPV1-4_channel	-	no_errors	TRPV3	HGNC	ENSG00000167723				52	0	0	21	15	41.6667
TRPV3	0	genome.wustl.edu	37	17	3433413	3433413	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	3433413	3433413	G	C	SNP	TRPV3	ENST00000301365	human	ensembl	74_37	-1	known	missense	c.1150	p.P384A	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_TRPV1-4_channel	-	no_errors	TRPV3	HGNC	ENSG00000167723				47	0	0	52	3	5.45455
TRPV1	0	genome.wustl.edu	37	17	3483809	3483809	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	3483809	3483809	G	T	SNP	TRPV1	ENST00000399756	human	ensembl	74_37	-1	known	missense	c.1489	p.L497M	1.000	tigrfam_TRP_channel	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_TRPV1-4_channel,tigrfam_TRP_channel	-	no_errors	TRPV1	HGNC	ENSG00000196689				124	1	0.8	85	6	6.59341
MYO19	0	genome.wustl.edu	37	17	34862848	34862848	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	34862848	34862848	G	A	SNP	MYO19	ENST00000431794	human	ensembl	74_37	-1	known	missense	c.1598	p.A533V	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO19	HGNC	ENSG00000141140				28	0	0	31	3	8.82353
TRPV1	0	genome.wustl.edu	37	17	3494585	3494585	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	3494585	3494585	C	T	SNP	TRPV1	ENST00000399756	human	ensembl	74_37	-1	known	missense	c.347	p.R116K	1.000	tigrfam_TRP_channel	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_TRPV1-4_channel,tigrfam_TRP_channel	-	no_errors	TRPV1	HGNC	ENSG00000196689				52	0	0	45	4	8.16327
ACACA	0	genome.wustl.edu	37	17	35601597	35601597	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	35601597	35601597	G	A	SNP	ACACA	ENST00000353139	human	ensembl	74_37	-1	known	silent	c.2649	p.G883	1.000	pfam_AcCoA_COase_cen	pfam_AcCoA_COase_cen,pfam_Carboxyl_trans,pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,pfam_Dala_Dala_lig_C,pfam_ATP-grasp_carboxylate-amine,superfamily_PreATP-grasp_dom,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_COA_CT_N,pfscan_COA_CT_C,pfscan_Biotin_lipoyl	-	no_errors	ACACA	HGNC	ENSG00000132142				96	0	0	80	13	13.9785
DUSP14	0	genome.wustl.edu	37	17	35872915	35872915	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	35872915	35872915	G	A	SNP	DUSP14	ENST00000394386	human	ensembl	74_37	+1	known	missense	c.541	p.V181I	1.000	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_Atypical_DUSP_famB,prints_Atypical_DUSP	-	no_errors	DUSP14	HGNC	ENSG00000161326				94	0	0	64	5	7.24638
SYNRG	0	genome.wustl.edu	37	17	35914085	35914085	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	35914085	35914085	T	C	SNP	SYNRG	ENST00000339208	human	ensembl	74_37	-1	known	silent	c.1740	p.S580	1.000	NULL	smart_EPS15_homology,pfscan_EPS15_homology	-	no_errors	SYNRG	HGNC	ENSG00000006114				157	1	0.632911	134	10	6.94444
SYNRG	0	genome.wustl.edu	37	17	35931915	35931915	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	35931915	35931915	A	G	SNP	SYNRG	ENST00000339208	human	ensembl	74_37	-1	known	missense	c.1073	p.V358A	1.000	smart_EPS15_homology,pfscan_EPS15_homology	smart_EPS15_homology,pfscan_EPS15_homology	-	no_errors	SYNRG	HGNC	ENSG00000006114				120	0	0	86	5	5.49451
DDX52	0	genome.wustl.edu	37	17	35986896	35986896	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	35986896	35986896	C	T	SNP	DDX52	ENST00000349699	human	ensembl	74_37	-1	known	silent	c.870	p.V290	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX52	HGNC	ENSG00000141141				119	0	0	72	9	11.1111
P2RX5	0	genome.wustl.edu	37	17	3599262	3599262	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	3599262	3599262	A	C	SNP	P2RX5	ENST00000435558	human	ensembl	74_37	-1	known	missense	c.38	p.L13R	0.099	prints_P2X5_purnocptor,tigrfam_P2X_purnocptor	pfam_P2X_purnocptor,prints_P2X_purnocptor,prints_P2X5_purnocptor,tigrfam_P2X_purnocptor	-	no_errors	P2RX5	HGNC	ENSG00000083454				73	0	0	59	4	6.34921
ITGAE	0	genome.wustl.edu	37	17	3656663	3656663	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	3656663	3656663	T	A	SNP	ITGAE	ENST00000263087	human	ensembl	74_37	-1	known	missense	c.1589	p.D530V	0.867	smart_Int_alpha_beta-p	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_Integrin_alpha_C_CS,smart_VWF_A,smart_Int_alpha_beta-p,prints_Integrin_alpha,pfscan_VWF_A	-	no_errors	ITGAE	HGNC	ENSG00000083457				55	0	0	46	4	8
ITGAE	0	genome.wustl.edu	37	17	3660314	3660314	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	3660314	3660314	G	A	SNP	ITGAE	ENST00000263087	human	ensembl	74_37	-1	known	silent	c.1135	p.L379	1.000	smart_VWF_A,pfscan_VWF_A	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_Integrin_alpha_C_CS,smart_VWF_A,smart_Int_alpha_beta-p,prints_Integrin_alpha,pfscan_VWF_A	-	no_errors	ITGAE	HGNC	ENSG00000083457				160	0	0	136	19	12.2581
MLLT6	0	genome.wustl.edu	37	17	36865786	36865786	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	36865786	36865786	C	T	SNP	MLLT6	ENST00000325718	human	ensembl	74_37	+1	known	silent	c.510	p.N170	0.957	smart_Znf_PHD,pfscan_Znf_PHD-finger	superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	MLLT6	HGNC	ENSG00000108292				52	0	0	44	5	10.2041
PCGF2	0	genome.wustl.edu	37	17	36895090	36895090	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	36895090	36895090	C	T	SNP	PCGF2	ENST00000360797	human	ensembl	74_37	-1	known	missense	c.341	p.R114H	0.841	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	PCGF2	HGNC	ENSG00000056661				58	0	0	68	9	11.6883
PLXDC1	0	genome.wustl.edu	37	17	37243861	37243861	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	37243861	37243861	C	T	SNP	PLXDC1	ENST00000315392	human	ensembl	74_37	-1	known	silent	c.906	p.P302	0.965	superfamily_Plexin-like_fold	pfam_Plexin_repeat,superfamily_Plexin-like_fold	-	no_errors	PLXDC1	HGNC	ENSG00000161381				25	0	0	22	7	24.1379
FBXL20	0	genome.wustl.edu	37	17	37420566	37420566	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	37420566	37420566	C	T	SNP	FBXL20	ENST00000264658	human	ensembl	74_37	-1	known	silent	c.1065	p.Q355	0.999	smart_Leu-rich_rpt_Cys-con_subtyp	pfam_F-box_dom,superfamily_F-box_dom,smart_F-box_dom,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_F-box_dom	-	no_errors	FBXL20	HGNC	ENSG00000108306				104	0	0	86	6	6.52174
FBXL20	0	genome.wustl.edu	37	17	37455285	37455285	+	Nonsense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	37455285	37455285	A	T	SNP	FBXL20	ENST00000264658	human	ensembl	74_37	-1	known	nonsense	c.287	p.L96*	1.000	smart_Leu-rich_rpt_Cys-con_subtyp	pfam_F-box_dom,superfamily_F-box_dom,smart_F-box_dom,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_F-box_dom	-	no_errors	FBXL20	HGNC	ENSG00000108306				83	0	0	65	9	12.1622
MED1	0	genome.wustl.edu	37	17	37565253	37565253	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	37565253	37565253	A	G	SNP	MED1	ENST00000300651	human	ensembl	74_37	-1	known	missense	c.3221	p.V1074A	1.000	NULL	pfam_Mediator_Med1_met/fun	-	no_errors	MED1	HGNC	ENSG00000125686				139	0	0	110	17	13.3858
MED1	0	genome.wustl.edu	37	17	37566692	37566692	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	37566692	37566692	G	A	SNP	MED1	ENST00000300651	human	ensembl	74_37	-1	known	silent	c.1782	p.D594	1.000	NULL	pfam_Mediator_Med1_met/fun	-	no_errors	MED1	HGNC	ENSG00000125686				104	0	0	116	15	11.4504
CAMKK1	0	genome.wustl.edu	37	17	3779601	3779601	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	3779601	3779601	G	A	SNP	CAMKK1	ENST00000381771	human	ensembl	74_37	-1	known	silent	c.1026	p.D342	0.099	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CAMKK1	HGNC	ENSG00000004660				74	0	0	72	5	6.49351
PSMD3	0	genome.wustl.edu	37	17	38142913	38142913	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	38142913	38142913	A	G	SNP	PSMD3	ENST00000264639	human	ensembl	74_37	+1	known	missense	c.497	p.Y166C	1.000	NULL	pfam_26S_Psome_reg_C,pfam_PCI_dom,smart_PAM,smart_PCI_dom	-	no_errors	PSMD3	HGNC	ENSG00000108344				157	0	0	179	23	11.3861
IGFBP4	0	genome.wustl.edu	37	17	38612755	38612755	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	38612755	38612755	A	T	SNP	IGFBP4	ENST00000269593	human	ensembl	74_37	+1	known	missense	c.697	p.T233S	1.000	pfam_Thyroglobulin_1,superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,pfscan_Thyroglobulin_1,prints_IGFBP-4	pfam_Thyroglobulin_1,pfam_IGFBP-like,superfamily_Thyroglobulin_1,superfamily_Growth_fac_rcpt_N_dom,smart_IGFBP-like,smart_Thyroglobulin_1,pfscan_Thyroglobulin_1,prints_IGFBP_1-6_chordata,prints_IGFBP-4	-	no_errors	IGFBP4	HGNC	ENSG00000141753				83	0	0	68	4	5.55556
TNS4	0	genome.wustl.edu	37	17	38643669	38643669	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	38643669	38643669	A	T	SNP	TNS4	ENST00000254051	human	ensembl	74_37	-1	known	missense	c.907	p.S303T	0.001	NULL	pfam_PTB,pfam_SH2,smart_SH2,smart_PTB/PI_dom,pfscan_SH2	-	no_errors	TNS4	HGNC	ENSG00000131746				67	0	0	43	7	14
KRT24	0	genome.wustl.edu	37	17	38859802	38859802	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	38859802	38859802	G	A	SNP	KRT24	ENST00000264651	human	ensembl	74_37	-1	known	silent	c.144	p.S48	0.749	NULL	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT24	HGNC	ENSG00000167916				45	0	0	58	12	17.1429
KRT25	0	genome.wustl.edu	37	17	38907439	38907439	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	38907439	38907439	G	A	SNP	KRT25	ENST00000312150	human	ensembl	74_37	-1	known	missense	c.809	p.A270V	0.112	pfam_IF	pfam_IF,prints_Keratin_I	-	no_errors	KRT25	HGNC	ENSG00000204897				57	0	0	53	20	27.3973
KRT28	0	genome.wustl.edu	37	17	38953225	38953225	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	38953225	38953225	G	A	SNP	KRT28	ENST00000306658	human	ensembl	74_37	-1	known	silent	c.921	p.T307	0.002	pfam_IF,superfamily_Prefoldin	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT28	HGNC	ENSG00000173908				83	0	0	66	13	16.4557
KRT20	0	genome.wustl.edu	37	17	39036904	39036904	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	39036904	39036904	T	C	SNP	KRT20	ENST00000167588	human	ensembl	74_37	-1	known	missense	c.592	p.N198D	0.980	pfam_IF	pfam_IF,prints_Keratin_I	-	no_errors	KRT20	HGNC	ENSG00000171431				118	0	0	115	14	10.8527
KRT39	0	genome.wustl.edu	37	17	39114896	39114896	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	39114896	39114896	T	A	SNP	KRT39	ENST00000355612	human	ensembl	74_37	-1	known	missense	c.1433	p.E478V	0.925	NULL	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT39	HGNC	ENSG00000196859				158	0	0	155	17	9.88372
KRT39	0	genome.wustl.edu	37	17	39122754	39122754	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	39122754	39122754	G	A	SNP	KRT39	ENST00000355612	human	ensembl	74_37	-1	known	nonsense	c.355	p.R119*	0.013	pfam_IF	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT39	HGNC	ENSG00000196859				251	0	0	224	14	5.88235
KRT40	0	genome.wustl.edu	37	17	39137109	39137109	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	39137109	39137109	G	A	SNP	KRT40	ENST00000377755	human	ensembl	74_37	-1	known	silent	c.903	p.C301	1.000	pfam_IF	pfam_IF,prints_Keratin_I	-	no_errors	KRT40	HGNC	ENSG00000204889				189	1	0.526316	130	36	21.6867
KRT33B	0	genome.wustl.edu	37	17	39521647	39521647	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	39521647	39521647	C	T	SNP	KRT33B	ENST00000251646	human	ensembl	74_37	-1	known	silent	c.747	p.T249	0.002	pfam_IF	pfam_IF,prints_Keratin_I	-	no_errors	KRT33B	HGNC	ENSG00000131738				38	0	0	51	4	7.27273
KRT34	0	genome.wustl.edu	37	17	39535677	39535677	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	39535677	39535677	G	A	SNP	KRT34	ENST00000394001	human	ensembl	74_37	-1	known	silent	c.930	p.C310	0.838	pfam_IF,superfamily_Prefoldin	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT34	HGNC	ENSG00000131737				93	0	0	88	13	12.8713
KRT32	0	genome.wustl.edu	37	17	39623459	39623459	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	39623459	39623459	A	G	SNP	KRT32	ENST00000225899	human	ensembl	74_37	-1	known	missense	c.119	p.V40A	0.747	NULL	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT32	HGNC	ENSG00000108759				55	0	0	65	12	15.5844
KRT14	0	genome.wustl.edu	37	17	39740076	39740076	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	39740076	39740076	C	T	SNP	KRT14	ENST00000167586	human	ensembl	74_37	-1	known	missense	c.863	p.R288H	1.000	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT14	HGNC	ENSG00000186847				170	0	0	116	36	23.6842
ZZEF1	0	genome.wustl.edu	37	17	3989830	3989830	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	3989830	3989830	C	T	SNP	ZZEF1	ENST00000381638	human	ensembl	74_37	-1	known	missense	c.2462	p.S821N	0.000	NULL	pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,superfamily_CUB_dom,smart_EF_hand_dom,smart_Znf_ZZ,pfscan_EF_hand_dom,pfscan_Znf_ZZ	-	no_errors	ZZEF1	HGNC	ENSG00000074755				109	0	0	115	9	7.25806
JUP	0	genome.wustl.edu	37	17	39921283	39921283	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	39921283	39921283	C	T	SNP	JUP	ENST00000310706	human	ensembl	74_37	-1	known	missense	c.946	p.V316M	1.000	superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo,prints_Beta-catenin	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo,prints_Beta-catenin	-	no_errors	JUP	HGNC	ENSG00000173801				62	0	0	60	6	9.09091
FKBP10	0	genome.wustl.edu	37	17	39974715	39974715	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	39974715	39974715	G	A	SNP	FKBP10	ENST00000321562	human	ensembl	74_37	+1	known	missense	c.663	p.M221I	1.000	pfam_PPIase_FKBP_dom,pfscan_PPIase_FKBP_dom	pfam_PPIase_FKBP_dom,smart_EF_hand_dom,pfscan_EF_hand_dom,pfscan_PPIase_FKBP_dom	-	no_errors	FKBP10	HGNC	ENSG00000141756				43	0	0	34	16	32
FKBP10	0	genome.wustl.edu	37	17	39977960	39977960	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	39977960	39977960	G	A	SNP	FKBP10	ENST00000321562	human	ensembl	74_37	+1	known	missense	c.1454	p.R485Q	0.993	pfscan_PPIase_FKBP_dom	pfam_PPIase_FKBP_dom,smart_EF_hand_dom,pfscan_EF_hand_dom,pfscan_PPIase_FKBP_dom	-	no_errors	FKBP10	HGNC	ENSG00000141756				75	0	0	72	12	14.2857
KLHL10	0	genome.wustl.edu	37	17	40001942	40001942	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	40001942	40001942	G	A	SNP	KLHL10	ENST00000293303	human	ensembl	74_37	+1	known	missense	c.1249	p.A417T	0.998	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL10	HGNC	ENSG00000161594				73	0	0	52	8	13.3333
DNAJC7	0	genome.wustl.edu	37	17	40141535	40141535	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	40141535	40141535	A	G	SNP	DNAJC7	ENST00000457167	human	ensembl	74_37	-1	known	missense	c.640	p.Y214H	1.000	pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR_1,pfam_TPR_2,pfam_DnaJ_domain,superfamily_DnaJ_domain,smart_TPR_repeat,smart_DnaJ_domain,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_DnaJ_domain,prints_DnaJ_domain	-	no_errors	DNAJC7	HGNC	ENSG00000168259				265	0	0	218	12	5.21739
ZZEF1	0	genome.wustl.edu	37	17	4020355	4020355	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	4020355	4020355	T	C	SNP	ZZEF1	ENST00000381638	human	ensembl	74_37	-1	known	missense	c.605	p.Y202C	1.000	superfamily_Galactose-bd-like	pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,superfamily_CUB_dom,smart_EF_hand_dom,smart_Znf_ZZ,pfscan_EF_hand_dom,pfscan_Znf_ZZ	-	no_errors	ZZEF1	HGNC	ENSG00000074755				164	0	0	119	41	25.625
KCNH4	0	genome.wustl.edu	37	17	40330388	40330388	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	40330388	40330388	C	A	SNP	KCNH4	ENST00000264661	human	ensembl	74_37	-1	known	nonsense	c.418	p.G140*	0.997	pfscan_PAS-assoc_C	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,pfam_PAS_fold_3,pfam_PAS_fold,pfam_PAS_4,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,superfamily_PAS,smart_PAC,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ELK,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,pfscan_PAS,pfscan_PAS-assoc_C,tigrfam_PAS	-	no_errors	KCNH4	HGNC	ENSG00000089558				39	0	0	34	5	12.8205
GHDC	0	genome.wustl.edu	37	17	40344600	40344600	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	40344600	40344600	C	A	SNP	GHDC	ENST00000301671	human	ensembl	74_37	-1	known	missense	c.548	p.R183M	0.000	NULL	pfam_GH3	-	no_errors	GHDC	HGNC	ENSG00000167925				71	0	0	57	9	13.6364
STAT5A	0	genome.wustl.edu	37	17	40458336	40458336	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	40458336	40458336	C	T	SNP	STAT5A	ENST00000345506	human	ensembl	74_37	+1	known	silent	c.1551	p.A517	0.798	pfam_STAT_TF_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,smart_SH2,pfscan_SH2	-	no_errors	STAT5A	HGNC	ENSG00000126561				55	0	0	43	13	23.2143
CNTNAP1	0	genome.wustl.edu	37	17	40839038	40839038	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	40839038	40839038	C	T	SNP	CNTNAP1	ENST00000264638	human	ensembl	74_37	+1	known	missense	c.1018	p.R340W	0.315	pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,superfamily_Fibrinogen_a/b/g_C_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP1	HGNC	ENSG00000108797				78	0	0	51	17	25
WNK4	0	genome.wustl.edu	37	17	40937321	40937321	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	40937321	40937321	C	T	SNP	WNK4	ENST00000246914	human	ensembl	74_37	+1	known	missense	c.1297	p.R433C	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	WNK4	HGNC	ENSG00000126562				18	0	0	12	5	29.4118
PSME3	0	genome.wustl.edu	37	17	40990148	40990148	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	40990148	40990148	A	G	SNP	PSME3	ENST00000293362	human	ensembl	74_37	+1	known	missense	c.331	p.S111G	1.000	pfam_Proteasome_activ_pa28_C,superfamily_Proteasome_activ_pa28	pfam_Proteasome_activ_pa28_C,pfam_Proteasome_activ_pa28_N,superfamily_Proteasome_activ_pa28	-	no_errors	PSME3	HGNC	ENSG00000131467				117	0	0	103	12	10.4348
AOC3	0	genome.wustl.edu	37	17	41004027	41004027	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	41004027	41004027	C	T	SNP	AOC3	ENST00000308423	human	ensembl	74_37	+1	known	missense	c.667	p.R223W	0.996	pfam_Cu_amine_oxidase_N3,superfamily_Cu_amine_oxidase_N-reg,prints_Cu_amine_oxidase	pfam_Cu_amine_oxidase_C,pfam_Cu_amine_oxidase_N2,pfam_Cu_amine_oxidase_N3,superfamily_Cu_amine_oxidase_C,superfamily_Cu_amine_oxidase_N-reg,prints_Cu_amine_oxidase	-	no_errors	AOC3	HGNC	ENSG00000131471				41	0	0	39	4	9.30233
PTGES3L-AARSD1	0	genome.wustl.edu	37	17	41108275	41108275	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	41108275	41108275	G	A	SNP	PTGES3L-AARSD1	ENST00000409399	human	ensembl	74_37	-1	known	silent	c.1131	p.G377	0.970	pfam_tRNA_SAD,superfamily_Thr/Ala-tRNA-synth_IIc_edit,smart_tRNA_SAD,pfscan_Ala-tRNA-synth_IIc_core	pfam_tRNA_SAD,pfam_CS_dom,pfam_Ala-tRNA-synth_IIc_N,superfamily_Thr/Ala-tRNA-synth_IIc_edit,superfamily_HSP20-like_chaperone,smart_tRNA_SAD,pfscan_CS_dom,pfscan_Ala-tRNA-synth_IIc_core	-	no_errors	PTGES3L-AARSD1	HGNC	ENSG00000108825				94	0	0	87	12	12.1212
VAT1	0	genome.wustl.edu	37	17	41170164	41170164	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	41170164	41170164	C	T	SNP	VAT1	ENST00000355653	human	ensembl	74_37	-1	known	missense	c.655	p.G219R	1.000	pfam_ADH_C,smart_PKS_ER	pfam_ADH_C,pfam_ADH_GroES-like,superfamily_GroES-like,smart_PKS_ER	-	no_errors	VAT1	HGNC	ENSG00000108828				88	0	0	78	12	13.3333
ETV4	0	genome.wustl.edu	37	17	41610241	41610241	+	Silent	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	41610241	41610241	G	T	SNP	ETV4	ENST00000319349	human	ensembl	74_37	-1	known	silent	c.612	p.P204	0.120	pfam_ETS_PEA3_N	pfam_ETS_PEA3_N,pfam_Ets_dom,smart_Ets_dom,prints_Ets_dom,pfscan_Ets_dom	-	no_errors	ETV4	HGNC	ENSG00000175832				84	0	0	74	19	20.4301
MPP3	0	genome.wustl.edu	37	17	41891392	41891392	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	41891392	41891392	G	A	SNP	MPP3	ENST00000398389	human	ensembl	74_37	-1	known	silent	c.1242	p.G414	0.141	pfam_GK/Ca_channel_bsu,superfamily_P-loop_NTPase,smart_GK/Ca_channel_bsu,pfscan_Guanylate_kin-like	pfam_GK/Ca_channel_bsu,pfam_L27_C,pfam_PDZ,pfam_SH3_2,superfamily_P-loop_NTPase,superfamily_SH3_domain,superfamily_PDZ,smart_L27,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like	-	no_errors	MPP3	HGNC	ENSG00000161647				91	0	0	64	20	23.8095
MPP3	0	genome.wustl.edu	37	17	41903165	41903165	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	41903165	41903165	C	T	SNP	MPP3	ENST00000398389	human	ensembl	74_37	-1	known	missense	c.568	p.A190T	0.000	pfam_PDZ,superfamily_SH3_domain,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_GK/Ca_channel_bsu,pfam_L27_C,pfam_PDZ,pfam_SH3_2,superfamily_P-loop_NTPase,superfamily_SH3_domain,superfamily_PDZ,smart_L27,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like	-	no_errors	MPP3	HGNC	ENSG00000161647				38	0	0	41	3	6.81818
PPY	0	genome.wustl.edu	37	17	42018862	42018862	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	42018862	42018862	C	T	SNP	PPY	ENST00000225992	human	ensembl	74_37	-1	known	missense	c.161	p.R54H	1.000	pfam_Pancreatic_hormone-like,smart_Pancreatic_hormone-like,pfscan_Pancreatic_hormone-like,prints_Pancreatic_hormone-like	pfam_Pancreatic_hormone-like,smart_Pancreatic_hormone-like,pfscan_Pancreatic_hormone-like,prints_Pancreatic_hormone-like	-	no_errors	PPY	HGNC	ENSG00000108849				136	0	0	121	11	8.33333
NAGS	0	genome.wustl.edu	37	17	42082072	42082072	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	42082072	42082072	C	A	SNP	NAGS	ENST00000293404	human	ensembl	74_37	+1	known	missense	c.41	p.A14D	0.002	pirsf_GlcNAc_Synth_met	pfam_DUF619,superfamily_Asp/Glu/Uridylate_kinase,superfamily_Acyl_CoA_acyltransferase,pirsf_GlcNAc_Synth_met,pfscan_GNAT_dom	-	no_errors	NAGS	HGNC	ENSG00000161653				42	0	0	32	4	11.1111
HDAC5	0	genome.wustl.edu	37	17	42162039	42162039	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	42162039	42162039	A	T	SNP	HDAC5	ENST00000225983	human	ensembl	74_37	-1	known	missense	c.2192	p.I731N	1.000	pfam_His_deacetylse_dom,pirsf_Histone_deAcase_II_euk	pfam_His_deacetylse_dom,pfam_Hist_deacetylase_Gln_rich_N,pirsf_Histone_deAcase_II_euk,prints_His_deacetylse	-	no_errors	HDAC5	HGNC	ENSG00000108840				79	0	0	82	6	6.81818
C17orf53	0	genome.wustl.edu	37	17	42225348	42225348	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	42225348	42225348	G	A	SNP	C17orf53	ENST00000319977	human	ensembl	74_37	+1	known	silent	c.177	p.R59	0.000	NULL	NULL	-	no_errors	C17orf53	HGNC	ENSG00000125319				85	0	0	77	17	18.0851
C17orf53	0	genome.wustl.edu	37	17	42230037	42230037	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	42230037	42230037	G	T	SNP	C17orf53	ENST00000319977	human	ensembl	74_37	+1	known	missense	c.1341	p.E447D	1.000	NULL	NULL	-	no_errors	C17orf53	HGNC	ENSG00000125319				100	1	0.990099	110	6	5.17241
UBTF	0	genome.wustl.edu	37	17	42286718	42286718	+	Splice_Site	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	42286718	42286718	A	G	SNP	UBTF	ENST00000302904	human	ensembl	74_37	-1	known	splice_site	c.1905+2	e16+2	1.000	-	-	-	no_errors	UBTF	HGNC	ENSG00000108312				39	0	0	36	5	12.1951
ITGA2B	0	genome.wustl.edu	37	17	42463260	42463260	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	42463260	42463260	T	G	SNP	ITGA2B	ENST00000262407	human	ensembl	74_37	-1	known	missense	c.340	p.T114P	0.002	NULL	pfam_Integrin_alpha-2,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA2B	HGNC	ENSG00000005961				15	0	0	18	5	21.7391
GPATCH8	0	genome.wustl.edu	37	17	42478681	42478681	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	42478681	42478681	G	A	SNP	GPATCH8	ENST00000591680	human	ensembl	74_37	-1	known	missense	c.764	p.T255I	0.987	NULL	pfam_G_patch_dom,pfam_Znf_C2H2_jaz,smart_G_patch_dom,pfscan_Znf_C2H2,pfscan_G_patch_dom	-	no_errors	GPATCH8	HGNC	ENSG00000186566				128	0	0	120	12	9.09091
EFTUD2	0	genome.wustl.edu	37	17	42937909	42937909	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	42937909	42937909	T	C	SNP	EFTUD2	ENST00000426333	human	ensembl	74_37	-1	known	missense	c.1610	p.Y537C	1.000	pfam_Transl_elong_EFTu/EF1A_2,superfamily_Transl_B-barrel	pfam_EF_GTP-bd_dom,pfam_Transl_elong_EFG/EF2_IV,pfam_EFG_V,pfam_Transl_elong_EFTu/EF1A_2,pfam_MIRO-like,superfamily_P-loop_NTPase,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_Transl_B-barrel,superfamily_EFG_III-V,smart_Transl_elong_EFG/EF2_IV,smart_EFG_V,prints_EF_GTP-bd_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	EFTUD2	HGNC	ENSG00000108883				64	0	0	62	7	10.1449
C1QL1	0	genome.wustl.edu	37	17	43044935	43044935	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	43044935	43044935	G	A	SNP	C1QL1	ENST00000253407	human	ensembl	74_37	-1	known	missense	c.482	p.A161V	1.000	pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	pfam_C1q,pfam_Collagen,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	C1QL1	HGNC	ENSG00000131094				91	0	0	75	7	8.53659
PLCD3	0	genome.wustl.edu	37	17	43190323	43190323	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	43190323	43190323	G	A	SNP	PLCD3	ENST00000322765	human	ensembl	74_37	-1	known	missense	c.2186	p.A729V	0.057	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_Pleckstrin_homology,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,pfscan_C2_dom,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCD3	HGNC	ENSG00000161714				12	0	0	18	3	14.2857
SPATA32	0	genome.wustl.edu	37	17	43333338	43333338	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	43333338	43333338	C	T	SNP	SPATA32	ENST00000331780	human	ensembl	74_37	-1	known	missense	c.211	p.A71T	0.000	NULL	NULL	-	no_errors	SPATA32	HGNC	ENSG00000184361				56	0	0	61	4	6.15385
PLEKHM1	0	genome.wustl.edu	37	17	43515154	43515154	+	RNA	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	43515154	43515154	T	C	SNP	PLEKHM1	ENST00000580404	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PLEKHM1	HGNC	ENSG00000225190				22	0	0	26	3	10.3448
SPPL2C	0	genome.wustl.edu	37	17	43923692	43923692	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	43923692	43923692	G	A	SNP	SPPL2C	ENST00000329196	human	ensembl	74_37	+1	known	missense	c.1420	p.V474M	0.001	pfam_Peptidase_A22B_SPP,smart_Preselin/SPP	pfam_Peptidase_A22B_SPP,pfam_Protease-assoc_domain,smart_Preselin/SPP	-	no_errors	SPPL2C	HGNC	ENSG00000185294				64	0	0	51	24	32
MAPT	0	genome.wustl.edu	37	17	44061147	44061147	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	44061147	44061147	C	T	SNP	MAPT	ENST00000344290	human	ensembl	74_37	+1	known	missense	c.977	p.A326V	0.000	NULL	pfam_MAP_tubulin-bd_rpt,prints_Tau	-	no_errors	MAPT	HGNC	ENSG00000186868				39	0	0	40	10	20
KANSL1	0	genome.wustl.edu	37	17	44116579	44116579	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	44116579	44116579	G	A	SNP	KANSL1	ENST00000262419	human	ensembl	74_37	-1	known	silent	c.2206	p.L736	1.000	NULL	NULL	-	no_errors	KANSL1	HGNC	ENSG00000120071				54	0	0	56	5	8.19672
SPNS2	0	genome.wustl.edu	37	17	4436605	4436605	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	4436605	4436605	C	T	SNP	SPNS2	ENST00000329078	human	ensembl	74_37	+1	known	missense	c.1156	p.R386C	0.727	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SPNS2	HGNC	ENSG00000183018				40	0	0	22	9	29.0323
GGT6	0	genome.wustl.edu	37	17	4463748	4463748	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	4463748	4463748	C	A	SNP	GGT6	ENST00000574154	human	ensembl	74_37	-1	known	missense	c.69	p.E23D	0.301	NULL	pfam_GGT_peptidase,prints_GGT_peptidase	-	no_errors	GGT6	HGNC	ENSG00000167741				51	0	0	60	5	7.69231
TBX21	0	genome.wustl.edu	37	17	45822579	45822579	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	45822579	45822579	G	A	SNP	TBX21	ENST00000177694	human	ensembl	74_37	+1	known	silent	c.1455	p.P485	0.894	NULL	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX21	HGNC	ENSG00000073861				50	0	0	37	11	22.9167
MRPL10	0	genome.wustl.edu	37	17	45904545	45904545	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	45904545	45904545	C	T	SNP	MRPL10	ENST00000351111	human	ensembl	74_37	-1	known	missense	c.248	p.R83H	0.441	NULL	pfam_Ribosomal_L10/acidic_P0	-	no_errors	MRPL10	HGNC	ENSG00000159111				89	0	0	67	8	10.6667
LRRC46	0	genome.wustl.edu	37	17	45909496	45909496	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	45909496	45909496	G	A	SNP	LRRC46	ENST00000269025	human	ensembl	74_37	+1	known	missense	c.41	p.G14D	0.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC46	HGNC	ENSG00000141294				142	0	0	140	11	7.28477
CBX1	0	genome.wustl.edu	37	17	46153532	46153532	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	46153532	46153532	T	C	SNP	CBX1	ENST00000225603	human	ensembl	74_37	-1	known	missense	c.149	p.N50S	1.000	pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow,prints_Chromo_dom_subgr	pfam_Chromo_shadow_dom,pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Chromo_shadow_dom,pfscan_Chromo_domain/shadow,prints_Chromo_dom_subgr	-	no_errors	CBX1	HGNC	ENSG00000108468				116	0	0	71	7	8.97436
CXCL16	0	genome.wustl.edu	37	17	4641712	4641712	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	4641712	4641712	C	T	SNP	CXCL16	ENST00000293778	human	ensembl	74_37	-1	known	missense	c.349	p.D117N	0.846	NULL	NULL	-	no_errors	CXCL16	HGNC	ENSG00000161921				47	0	0	31	6	16.2162
ZMYND15	0	genome.wustl.edu	37	17	4647966	4647966	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	4647966	4647966	G	A	SNP	ZMYND15	ENST00000433935	human	ensembl	74_37	+1	known	missense	c.1730	p.R577Q	0.675	NULL	pfam_Znf_MYND,pfscan_Znf_MYND	-	no_errors	ZMYND15	HGNC	ENSG00000141497				82	0	0	65	22	25.2874
HOXB1	0	genome.wustl.edu	37	17	46608232	46608232	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	46608232	46608232	T	C	SNP	HOXB1	ENST00000239174	human	ensembl	74_37	-1	known	missense	c.35	p.Y12C	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	HOXB1	HGNC	ENSG00000120094				97	0	0	89	9	9.18367
HOXB5	0	genome.wustl.edu	37	17	46669628	46669628	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	46669628	46669628	C	A	SNP	HOXB5	ENST00000239151	human	ensembl	74_37	-1	known	missense	c.753	p.K251N	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa,prints_Homeobox_antennapedia	-	no_errors	HOXB5	HGNC	ENSG00000120075				137	0	0	124	11	8.14815
HOXB8	0	genome.wustl.edu	37	17	46691747	46691747	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	46691747	46691747	T	C	SNP	HOXB8	ENST00000239144	human	ensembl	74_37	-1	known	missense	c.320	p.Y107C	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa,prints_HTH_motif	-	no_errors	HOXB8	HGNC	ENSG00000120068				33	0	0	30	5	14.2857
HOXB8	0	genome.wustl.edu	37	17	46691765	46691765	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	46691765	46691765	T	C	SNP	HOXB8	ENST00000239144	human	ensembl	74_37	-1	known	missense	c.302	p.D101G	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa,prints_HTH_motif	-	no_errors	HOXB8	HGNC	ENSG00000120068				37	0	0	41	6	12.766
HOXB13	0	genome.wustl.edu	37	17	46804235	46804235	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	46804235	46804235	G	A	SNP	HOXB13	ENST00000290295	human	ensembl	74_37	-1	known	missense	c.772	p.R258C	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_HoxA13_N,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	HOXB13	HGNC	ENSG00000159184				97	0	0	80	21	20.7921
TTLL6	0	genome.wustl.edu	37	17	46847394	46847394	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	46847394	46847394	C	T	SNP	TTLL6	ENST00000393382	human	ensembl	74_37	-1	known	silent	c.2106	p.P702	0.000	NULL	pfam_TTL/TTLL_fam	-	no_errors	TTLL6	HGNC	ENSG00000170703				100	0	0	95	9	8.65385
GIP	0	genome.wustl.edu	37	17	47039154	47039154	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	47039154	47039154	C	T	SNP	GIP	ENST00000357424	human	ensembl	74_37	-1	known	silent	c.285	p.E95	0.693	NULL	pfam_Glucagon_GIP_secretin_VIP,smart_Glucagon_GIP_secretin_VIP	-	no_errors	GIP	HGNC	ENSG00000159224				39	0	0	34	9	20.9302
PLD2	0	genome.wustl.edu	37	17	4711687	4711687	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	4711687	4711687	T	C	SNP	PLD2	ENST00000263088	human	ensembl	74_37	+1	known	missense	c.359	p.L120S	1.000	pfam_Phox,superfamily_Phox,smart_Phox,pirsf_PLipase_D_euk,pfscan_Phox	pfam_Phox,pfam_PLipase_D/transphosphatidylase,superfamily_Phox,smart_Phox,smart_Pleckstrin_homology,smart_PLipase_D/transphosphatidylase,pirsf_PLipase_D_euk,pfscan_Phox,pfscan_PLipase_D/transphosphatidylase	-	no_errors	PLD2	HGNC	ENSG00000129219				186	0	0	153	13	7.83133
IGF2BP1	0	genome.wustl.edu	37	17	47121413	47121413	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	47121413	47121413	A	G	SNP	IGF2BP1	ENST00000290341	human	ensembl	74_37	+1	known	missense	c.1285	p.K429E	1.000	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	pfam_KH_dom_type_1,pfam_RRM_dom,smart_RRM_dom,smart_KH_dom,pfscan_KH_dom_type_1,pfscan_RRM_dom	-	no_errors	IGF2BP1	HGNC	ENSG00000159217				116	0	0	92	28	23.3333
PLD2	0	genome.wustl.edu	37	17	4714224	4714224	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	4714224	4714224	C	T	SNP	PLD2	ENST00000263088	human	ensembl	74_37	+1	known	missense	c.988	p.R330W	0.952	pirsf_PLipase_D_euk	pfam_Phox,pfam_PLipase_D/transphosphatidylase,superfamily_Phox,smart_Phox,smart_Pleckstrin_homology,smart_PLipase_D/transphosphatidylase,pirsf_PLipase_D_euk,pfscan_Phox,pfscan_PLipase_D/transphosphatidylase	-	no_errors	PLD2	HGNC	ENSG00000129219				75	0	0	66	4	5.71429
PLD2	0	genome.wustl.edu	37	17	4721823	4721823	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	4721823	4721823	C	T	SNP	PLD2	ENST00000263088	human	ensembl	74_37	+1	known	missense	c.2044	p.P682S	1.000	pirsf_PLipase_D_euk	pfam_Phox,pfam_PLipase_D/transphosphatidylase,superfamily_Phox,smart_Phox,smart_Pleckstrin_homology,smart_PLipase_D/transphosphatidylase,pirsf_PLipase_D_euk,pfscan_Phox,pfscan_PLipase_D/transphosphatidylase	-	no_errors	PLD2	HGNC	ENSG00000129219				64	0	0	75	7	8.53659
PLD2	0	genome.wustl.edu	37	17	4722429	4722429	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	4722429	4722429	G	T	SNP	PLD2	ENST00000263088	human	ensembl	74_37	+1	known	nonsense	c.2224	p.G742*	0.986	pirsf_PLipase_D_euk	pfam_Phox,pfam_PLipase_D/transphosphatidylase,superfamily_Phox,smart_Phox,smart_Pleckstrin_homology,smart_PLipase_D/transphosphatidylase,pirsf_PLipase_D_euk,pfscan_Phox,pfscan_PLipase_D/transphosphatidylase	-	no_errors	PLD2	HGNC	ENSG00000129219				65	0	0	60	8	11.7647
GNGT2	0	genome.wustl.edu	37	17	47284707	47284707	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	47284707	47284707	T	C	SNP	GNGT2	ENST00000300406	human	ensembl	74_37	-1	known	silent	c.78	p.R26	0.018	pfam_G-protein_gamma-like_dom,superfamily_G-protein_gamma-like_dom,smart_G-protein_gamma-like_dom,pfscan_G-protein_gamma-like_dom,prints_Gprotein-gamma	pfam_G-protein_gamma-like_dom,superfamily_G-protein_gamma-like_dom,smart_G-protein_gamma-like_dom,pfscan_G-protein_gamma-like_dom,prints_Gprotein-gamma	-	no_errors	GNGT2	HGNC	ENSG00000167083				319	0	0	308	28	8.33333
NGFR	0	genome.wustl.edu	37	17	47583768	47583768	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	47583768	47583768	G	A	SNP	NGFR	ENST00000172229	human	ensembl	74_37	+1	known	missense	c.316	p.V106M	1.000	pfam_TNFR/NGFR_Cys_rich_reg,smart_TNFR/NGFR_Cys_rich_reg,pfscan_TNFR/NGFR_Cys_rich_reg	pfam_TNFR/NGFR_Cys_rich_reg,pfam_Death_domain,superfamily_DEATH-like_dom,smart_TNFR/NGFR_Cys_rich_reg,smart_Death_domain,pfscan_Death_domain,pfscan_TNFR/NGFR_Cys_rich_reg,prints_TNFR_16	-	no_errors	NGFR	HGNC	ENSG00000064300				25	0	0	17	8	32
KAT7	0	genome.wustl.edu	37	17	47904898	47904898	+	RNA	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	47904898	47904898	C	T	SNP	KAT7	ENST00000503101	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	KAT7	HGNC	ENSG00000136504				27	0	0	25	2	7.40741
MINK1	0	genome.wustl.edu	37	17	4796870	4796870	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	4796870	4796870	A	C	SNP	MINK1	ENST00000355280	human	ensembl	74_37	+1	known	missense	c.2542	p.S848R	0.997	NULL	pfam_Prot_kinase_dom,pfam_Citron,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_dom	-	no_errors	MINK1	HGNC	ENSG00000141503				30	0	0	31	8	20.5128
DLX3	0	genome.wustl.edu	37	17	48072105	48072105	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	48072105	48072105	A	G	SNP	DLX3	ENST00000434704	human	ensembl	74_37	-1	known	silent	c.258	p.Y86	0.998	pfam_Distal-less_N	pfam_Distal-less_N,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_HTH_motif,prints_Homeobox_metazoa	-	no_errors	DLX3	HGNC	ENSG00000064195				76	0	0	75	6	7.40741
COL1A1	0	genome.wustl.edu	37	17	48263363	48263363	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	48263363	48263363	C	A	SNP	COL1A1	ENST00000225964	human	ensembl	74_37	-1	known	missense	c.4024	p.G1342C	0.998	pfam_Fib_collagen_C,smart_Fib_collagen_C	pfam_Collagen,pfam_Fib_collagen_C,pfam_VWF_C,superfamily_Fibrinogen_a/b/g_C_dom,smart_VWF_C,smart_Fib_collagen_C,pfscan_VWF_C	-	no_errors	COL1A1	HGNC	ENSG00000108821				53	0	0	42	7	14.2857
COL1A1	0	genome.wustl.edu	37	17	48267694	48267694	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	48267694	48267694	G	A	SNP	COL1A1	ENST00000225964	human	ensembl	74_37	-1	known	silent	c.2445	p.G815	0.996	pfam_Collagen	pfam_Collagen,pfam_Fib_collagen_C,pfam_VWF_C,superfamily_Fibrinogen_a/b/g_C_dom,smart_VWF_C,smart_Fib_collagen_C,pfscan_VWF_C	-	no_errors	COL1A1	HGNC	ENSG00000108821				75	0	0	67	7	9.45946
EME1	0	genome.wustl.edu	37	17	48458187	48458187	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	48458187	48458187	C	T	SNP	EME1	ENST00000393271	human	ensembl	74_37	+1	known	missense	c.1639	p.R547C	1.000	NULL	pfam_ERCC4_domain,smart_ERCC4_domain	-	no_errors	EME1	HGNC	ENSG00000154920				168	0	0	136	15	9.93377
RNF167	0	genome.wustl.edu	37	17	4848061	4848061	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	4848061	4848061	G	A	SNP	RNF167	ENST00000262482	human	ensembl	74_37	+1	known	missense	c.803	p.C268Y	1.000	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH,smart_Znf_RING,pfscan_Znf_RING	pfam_Protease-assoc_domain,pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF167	HGNC	ENSG00000108523				113	0	0	99	9	8.33333
ACSF2	0	genome.wustl.edu	37	17	48539648	48539648	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	48539648	48539648	C	T	SNP	ACSF2	ENST00000300441	human	ensembl	74_37	+1	known	missense	c.611	p.A204V	0.809	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSF2	HGNC	ENSG00000167107				63	0	0	56	7	11.1111
CHAD	0	genome.wustl.edu	37	17	48545855	48545855	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	48545855	48545855	G	A	SNP	CHAD	ENST00000258969	human	ensembl	74_37	-1	known	missense	c.320	p.S107F	1.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	CHAD	HGNC	ENSG00000136457				98	0	0	85	9	9.57447
MYCBPAP	0	genome.wustl.edu	37	17	48603399	48603399	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	48603399	48603399	G	A	SNP	MYCBPAP	ENST00000323776	human	ensembl	74_37	+1	known	missense	c.2069	p.R690H	0.000	NULL	NULL	-	no_errors	MYCBPAP	HGNC	ENSG00000136449				57	0	0	61	10	14.0845
SPATA20	0	genome.wustl.edu	37	17	48626681	48626681	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	48626681	48626681	G	T	SNP	SPATA20	ENST00000006658	human	ensembl	74_37	+1	known	missense	c.695	p.S232I	1.000	pfam_DUF255	pfam_DUF255,pfam_AGE/RnBP,superfamily_6-hairpin_glycosidase-like,superfamily_Thioredoxin-like_fold	-	no_errors	SPATA20	HGNC	ENSG00000006282				54	0	0	69	4	5.47945
CACNA1G	0	genome.wustl.edu	37	17	48678434	48678434	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	48678434	48678434	A	G	SNP	CACNA1G	ENST00000359106	human	ensembl	74_37	+1	known	missense	c.3814	p.I1272V	1.000	NULL	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_VDCCAlpha1	-	no_errors	CACNA1G	HGNC	ENSG00000006283				117	0	0	106	9	7.82609
CACNA1G	0	genome.wustl.edu	37	17	48678461	48678461	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	48678461	48678461	G	A	SNP	CACNA1G	ENST00000359106	human	ensembl	74_37	+1	known	missense	c.3841	p.V1281M	0.998	NULL	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_VDCCAlpha1	-	no_errors	CACNA1G	HGNC	ENSG00000006283				101	0	0	91	12	11.6505
CACNA1G	0	genome.wustl.edu	37	17	48680184	48680184	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	48680184	48680184	C	T	SNP	CACNA1G	ENST00000359106	human	ensembl	74_37	+1	known	missense	c.3919	p.R1307C	1.000	NULL	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_VDCCAlpha1	-	no_errors	CACNA1G	HGNC	ENSG00000006283				29	0	0	34	6	15
KIF1C	0	genome.wustl.edu	37	17	4905895	4905895	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	4905895	4905895	A	G	SNP	KIF1C	ENST00000320785	human	ensembl	74_37	+1	known	missense	c.566	p.Y189C	1.000	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF1C	HGNC	ENSG00000129250				105	0	0	135	16	10.596
SLC52A1	0	genome.wustl.edu	37	17	4937093	4937093	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	4937093	4937093	G	A	SNP	SLC52A1	ENST00000254853	human	ensembl	74_37	-1	known	missense	c.691	p.P231S	0.001	NULL	pfam_Endogenous_retrovirus_rcpt	-	no_errors	SLC52A1	HGNC	ENSG00000132517				63	0	0	68	8	10.5263
USP6	0	genome.wustl.edu	37	17	5041418	5041418	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	5041418	5041418	C	T	SNP	USP6	ENST00000250066	human	ensembl	74_37	+1	known	missense	c.928	p.R310C	0.999	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom	pfam_Peptidase_C19/C67,pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom,pfscan_Peptidase_C19/C67	-	no_errors	USP6	HGNC	ENSG00000129204				62	0	0	73	16	17.9775
RABEP1	0	genome.wustl.edu	37	17	5276735	5276735	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	5276735	5276735	C	A	SNP	RABEP1	ENST00000262477	human	ensembl	74_37	+1	known	missense	c.2011	p.P671T	1.000	pfam_Rabaptin_Rab5-bd_dom	pfam_Rabaptin_coiled-coil,pfam_Rabaptin_Rab5-bd_dom,prints_Rabaptin	-	no_errors	RABEP1	HGNC	ENSG00000029725				59	0	0	46	5	9.80392
STXBP4	0	genome.wustl.edu	37	17	53108540	53108540	+	Nonsense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	53108540	53108540	T	A	SNP	STXBP4	ENST00000376352	human	ensembl	74_37	+1	known	nonsense	c.678	p.Y226*	1.000	NULL	pfam_WW_dom,pfam_PDZ,superfamily_PDZ,superfamily_WW_dom,smart_PDZ,smart_WW_dom,pfscan_PDZ,pfscan_WW_dom	-	no_errors	STXBP4	HGNC	ENSG00000166263				36	0	0	35	3	7.89474
C1QBP	0	genome.wustl.edu	37	17	5338255	5338255	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	5338255	5338255	T	C	SNP	C1QBP	ENST00000225698	human	ensembl	74_37	-1	known	missense	c.415	p.I139V	1.000	pfam_MAM33,superfamily_MAM33	pfam_MAM33,superfamily_MAM33	-	no_errors	C1QBP	HGNC	ENSG00000108561				124	0	0	103	9	8.03571
HLF	0	genome.wustl.edu	37	17	53392616	53392616	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	53392616	53392616	A	G	SNP	HLF	ENST00000570962	human	ensembl	74_37	+1	known	missense	c.220	p.T74A	0.987	NULL	NULL	-	no_errors	HLF	HGNC	ENSG00000108924				125	0	0	127	14	9.92908
MMD	0	genome.wustl.edu	37	17	53478860	53478860	+	Silent	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	53478860	53478860	T	A	SNP	MMD	ENST00000262065	human	ensembl	74_37	-1	known	silent	c.486	p.G162	0.989	pfam_HlyIII-related,tigrfam_HylIII	pfam_HlyIII-related,tigrfam_HylIII	-	no_errors	MMD	HGNC	ENSG00000108960				94	0	0	53	12	18.4615
VPS53	0	genome.wustl.edu	37	17	534801	534801	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	534801	534801	G	A	SNP	VPS53	ENST00000437048	human	ensembl	74_37	-1	known	nonsense	c.676	p.Q226*	1.000	pfam_Vps53_N	pfam_Vps53_N,pfam_Vacuolar_sorting-assoc_54	-	no_errors	VPS53	HGNC	ENSG00000141252				77	0	0	57	4	6.55738
NLRP1	0	genome.wustl.edu	37	17	5436169	5436169	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	5436169	5436169	A	G	SNP	NLRP1	ENST00000572272	human	ensembl	74_37	-1	known	missense	c.3269	p.V1090A	0.001	NULL	pfam_CARD,pfam_DAPIN,pfam_Leu-rich_rpt,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_CARD,pfscan_DAPIN,prints_Disease_R	-	no_errors	NLRP1	HGNC	ENSG00000091592				36	0	0	43	3	6.52174
ANKFN1	0	genome.wustl.edu	37	17	54450156	54450156	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	54450156	54450156	A	G	SNP	ANKFN1	ENST00000318698	human	ensembl	74_37	+1	known	missense	c.760	p.R254G	1.000	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Fibronectin_type3,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Fibronectin_type3	-	no_errors	ANKFN1	HGNC	ENSG00000153930				148	0	0	121	11	8.33333
AKAP1	0	genome.wustl.edu	37	17	55182953	55182953	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	55182953	55182953	C	T	SNP	AKAP1	ENST00000337714	human	ensembl	74_37	+1	known	missense	c.128	p.A43V	0.824	NULL	pfam_Tudor,pfam_KH_dom_type_1,smart_KH_dom,smart_Tudor,pfscan_Tudor,pfscan_KH_dom_type_1	-	no_errors	AKAP1	HGNC	ENSG00000121057				33	0	0	38	2	5
EPX	0	genome.wustl.edu	37	17	56276948	56276948	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	56276948	56276948	G	A	SNP	EPX	ENST00000225371	human	ensembl	74_37	+1	known	missense	c.1330	p.A444T	0.652	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	-	no_errors	EPX	HGNC	ENSG00000121053				78	0	0	66	6	8.33333
MKS1	0	genome.wustl.edu	37	17	56284448	56284448	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	56284448	56284448	T	C	SNP	MKS1	ENST00000393119	human	ensembl	74_37	-1	known	missense	c.1405	p.K469E	1.000	pfam_B9_dom	pfam_B9_dom	-	no_errors	MKS1	HGNC	ENSG00000011143				121	0	0	69	5	6.75676
RNF43	0	genome.wustl.edu	37	17	56438188	56438188	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	56438188	56438188	C	T	SNP	RNF43	ENST00000407977	human	ensembl	74_37	-1	known	missense	c.805	p.A269T	0.975	NULL	pfam_Znf_C3HC4_RING-type,superfamily_PAS,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF43	HGNC	ENSG00000108375				49	0	0	38	2	5
RNF43	0	genome.wustl.edu	37	17	56439908	56439908	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	56439908	56439908	C	T	SNP	RNF43	ENST00000407977	human	ensembl	74_37	-1	known	silent	c.684	p.R228	1.000	NULL	pfam_Znf_C3HC4_RING-type,superfamily_PAS,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF43	HGNC	ENSG00000108375				110	0	0	129	8	5.83942
HSF5	0	genome.wustl.edu	37	17	56540625	56540625	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	56540625	56540625	G	A	SNP	HSF5	ENST00000323777	human	ensembl	74_37	-1	known	missense	c.1060	p.P354S	1.000	NULL	pfam_HSF_DNA-bd,smart_HSF_DNA-bd	-	no_errors	HSF5	HGNC	ENSG00000176160				151	0	0	111	14	11.2
HSF5	0	genome.wustl.edu	37	17	56565215	56565215	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	56565215	56565215	C	T	SNP	HSF5	ENST00000323777	human	ensembl	74_37	-1	known	missense	c.421	p.G141S	1.000	NULL	pfam_HSF_DNA-bd,smart_HSF_DNA-bd	-	no_errors	HSF5	HGNC	ENSG00000176160				28	0	0	28	6	17.6471
HSF5	0	genome.wustl.edu	37	17	56565535	56565535	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	56565535	56565535	C	T	SNP	HSF5	ENST00000323777	human	ensembl	74_37	-1	known	missense	c.101	p.G34D	1.000	smart_HSF_DNA-bd	pfam_HSF_DNA-bd,smart_HSF_DNA-bd	-	no_errors	HSF5	HGNC	ENSG00000176160				38	0	0	24	3	11.1111
MTMR4	0	genome.wustl.edu	37	17	56582887	56582887	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	56582887	56582887	C	T	SNP	MTMR4	ENST00000323456	human	ensembl	74_37	-1	known	missense	c.1049	p.R350Q	1.000	NULL	pfam_Myotubularin-like_Pase_dom,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel,pfscan_Tyr/Dual-sp_Pase	-	no_errors	MTMR4	HGNC	ENSG00000108389				98	0	0	86	14	14
SEPT4	0	genome.wustl.edu	37	17	56598409	56598409	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	56598409	56598409	T	C	SNP	SEPT4	ENST00000457347	human	ensembl	74_37	-1	known	silent	c.1272	p.A424	1.000	pfam_Cell_div_GTP-bd	pfam_Cell_div_GTP-bd,superfamily_P-loop_NTPase	-	no_errors	SEPT4	HGNC	ENSG00000108387				143	0	0	119	29	19.5946
SEPT4	0	genome.wustl.edu	37	17	56604289	56604289	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	56604289	56604289	G	A	SNP	SEPT4	ENST00000457347	human	ensembl	74_37	-1	known	silent	c.156	p.F52	0.997	NULL	pfam_Cell_div_GTP-bd,superfamily_P-loop_NTPase	-	no_errors	SEPT4	HGNC	ENSG00000108387				141	0	0	120	35	22.5806
TEX14	0	genome.wustl.edu	37	17	56692669	56692669	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	56692669	56692669	G	T	SNP	TEX14	ENST00000240361	human	ensembl	74_37	-1	known	missense	c.823	p.L275M	0.997	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Prot_kinase_dom	-	no_errors	TEX14	HGNC	ENSG00000121101				105	0	0	86	5	5.49451
TRIM37	0	genome.wustl.edu	37	17	57125059	57125059	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	57125059	57125059	A	G	SNP	TRIM37	ENST00000262294	human	ensembl	74_37	-1	known	missense	c.1652	p.I551T	1.000	NULL	pfam_Znf_B-box,pfam_MATH,superfamily_TRAF-like,smart_Znf_B-box,smart_Bbox_C,smart_MATH,pfscan_MATH,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM37	HGNC	ENSG00000108395				55	0	0	19	5	20.8333
SKA2	0	genome.wustl.edu	37	17	57196750	57196750	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	57196750	57196750	C	G	SNP	SKA2	ENST00000330137	human	ensembl	74_37	-1	known	missense	c.227	p.S76T	0.027	NULL	NULL	-	no_errors	SKA2	HGNC	ENSG00000182628				160	0	0	109	14	11.3821
DHX40	0	genome.wustl.edu	37	17	57684404	57684404	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	57684404	57684404	G	A	SNP	DHX40	ENST00000251241	human	ensembl	74_37	+1	known	silent	c.2211	p.S737	0.975	NULL	pfam_DUF1605,pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_T2SS_protein-E,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX40	HGNC	ENSG00000108406				77	0	0	55	3	5.17241
CLTC	0	genome.wustl.edu	37	17	57762469	57762469	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	57762469	57762469	C	A	SNP	CLTC	ENST00000269122	human	ensembl	74_37	+1	known	missense	c.4487	p.A1496D	1.000	pfam_Clathrin_H-chain/VPS_repeat,superfamily_ARM-type_fold,smart_Clathrin_H-chain/VPS_repeat,pirsf_Clathrin_heavy_chain	pfam_Clathrin_H-chain/VPS_repeat,pfam_Clathrin_H-chain_propeller_rpt,pfam_Clathrin_H-chain_linker_core,superfamily_Clathrin_H-chain_propeller_N,superfamily_ARM-type_fold,smart_Clathrin_H-chain/VPS_repeat,pirsf_Clathrin_heavy_chain	-	no_errors	CLTC	HGNC	ENSG00000141367				190	0	0	137	8	5.51724
TUBD1	0	genome.wustl.edu	37	17	57955509	57955509	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	57955509	57955509	T	A	SNP	TUBD1	ENST00000325752	human	ensembl	74_37	-1	known	missense	c.724	p.T242S	0.930	superfamily_Tubulin_FtsZ_GTPase,smart_Tubulin_FtsZ_GTPase	pfam_Tubulin_FtsZ_GTPase,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,prints_Delta_tubulin,prints_Tubulin,prints_Epsilon_tubulin	-	no_errors	TUBD1	HGNC	ENSG00000108423				84	0	0	57	4	6.55738
TBC1D3P1-DHX40P1	0	genome.wustl.edu	37	17	58064884	58064884	+	RNA	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	58064884	58064884	A	G	SNP	TBC1D3P1-DHX40P1	ENST00000587125	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	TBC1D3P1-DHX40P1	HGNC	ENSG00000267104				137	0	0	95	10	9.52381
CA4	0	genome.wustl.edu	37	17	58233921	58233921	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	58233921	58233921	T	C	SNP	CA4	ENST00000300900	human	ensembl	74_37	+1	known	missense	c.113	p.V38A	0.991	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	-	no_errors	CA4	HGNC	ENSG00000167434				72	0	0	65	10	13.3333
PPM1D	0	genome.wustl.edu	37	17	58740868	58740868	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	58740868	58740868	A	G	SNP	PPM1D	ENST00000305921	human	ensembl	74_37	+1	known	silent	c.1773	p.G591	1.000	NULL	pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom	-	no_errors	PPM1D	HGNC	ENSG00000170836				76	0	0	51	3	5.55556
BCAS3	0	genome.wustl.edu	37	17	58952026	58952026	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	58952026	58952026	C	T	SNP	BCAS3	ENST00000390652	human	ensembl	74_37	+1	known	silent	c.588	p.I196	1.000	NULL	pfam_BCAS3,pfam_WD40_repeat	-	no_errors	BCAS3	HGNC	ENSG00000141376				103	0	0	45	14	23.7288
BCAS3	0	genome.wustl.edu	37	17	58967097	58967097	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	58967097	58967097	C	A	SNP	BCAS3	ENST00000390652	human	ensembl	74_37	+1	known	missense	c.703	p.L235I	1.000	NULL	pfam_BCAS3,pfam_WD40_repeat	-	no_errors	BCAS3	HGNC	ENSG00000141376				192	0	0	126	9	6.66667
TBX2	0	genome.wustl.edu	37	17	59480452	59480452	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	59480452	59480452	C	T	SNP	TBX2	ENST00000240328	human	ensembl	74_37	+1	novel	missense	c.694	p.P232S	1.000	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box,prints_TF_Brachyury	pfam_TF_T-box,pfam_TBX,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box,prints_TF_Brachyury	-	no_errors	TBX2	HGNC	ENSG00000121068				88	0	0	77	20	20.6186
TBX4	0	genome.wustl.edu	37	17	59560379	59560379	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	59560379	59560379	C	T	SNP	TBX4	ENST00000393853	human	ensembl	74_37	+1	known	silent	c.1143	p.P381	0.997	NULL	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX4	HGNC	ENSG00000121075				36	0	0	36	6	14.2857
WSCD1	0	genome.wustl.edu	37	17	5984004	5984004	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	5984004	5984004	A	G	SNP	WSCD1	ENST00000317744	human	ensembl	74_37	+1	known	missense	c.26	p.Q9R	1.000	NULL	pfam_WSC_carb-bd,pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,smart_WSC_carb-bd_subgr,pfscan_WSC_carb-bd	-	no_errors	WSCD1	HGNC	ENSG00000179314				57	0	0	47	3	6
WSCD1	0	genome.wustl.edu	37	17	6021338	6021338	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	6021338	6021338	G	A	SNP	WSCD1	ENST00000317744	human	ensembl	74_37	+1	known	missense	c.1205	p.S402N	1.000	superfamily_P-loop_NTPase	pfam_WSC_carb-bd,pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,smart_WSC_carb-bd_subgr,pfscan_WSC_carb-bd	-	no_errors	WSCD1	HGNC	ENSG00000179314				101	0	0	97	8	7.61905
TLK2	0	genome.wustl.edu	37	17	60678155	60678155	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	60678155	60678155	C	T	SNP	TLK2	ENST00000326270	human	ensembl	74_37	+1	known	missense	c.1760	p.P587L	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TLK2	HGNC	ENSG00000146872				71	0	0	56	5	8.19672
MRC2	0	genome.wustl.edu	37	17	60757577	60757577	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	60757577	60757577	T	A	SNP	MRC2	ENST00000303375	human	ensembl	74_37	+1	known	missense	c.2345	p.I782N	1.000	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,pfam_FN_type2_col-bd,pfam_Herpes_UL45-like,superfamily_C-type_lectin_fold,superfamily_Ricin_B_lectin,superfamily_Kringle-like,smart_Ricin_B_lectin,smart_FN_type2_col-bd,smart_C-type_lectin,pfscan_FN_type2_col-bd,pfscan_C-type_lectin,pfscan_Ricin_B_lectin,prints_AntifreezeII	-	no_errors	MRC2	HGNC	ENSG00000011028				28	0	0	35	4	10.2564
MARCH10	0	genome.wustl.edu	37	17	60802447	60802447	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	60802447	60802447	G	A	SNP	MARCH10	ENST00000311269	human	ensembl	74_37	-1	known	silent	c.1956	p.S652	0.002	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH	-	no_errors	MARCH10	HGNC	ENSG00000173838				59	0	0	64	9	12.3288
TANC2	0	genome.wustl.edu	37	17	61473221	61473221	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	61473221	61473221	G	A	SNP	TANC2	ENST00000424789	human	ensembl	74_37	+1	known	missense	c.2947	p.G983R	1.000	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,smart_Ankyrin_rpt,smart_TPR_repeat,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Ankyrin_rpt	-	no_errors	TANC2	HGNC	ENSG00000170921				24	0	0	18	3	14.2857
ACE	0	genome.wustl.edu	37	17	61561282	61561282	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	61561282	61561282	A	G	SNP	ACE	ENST00000290866	human	ensembl	74_37	+1	known	silent	c.1659	p.P553	0.010	pfam_Peptidase_M2	pfam_Peptidase_M2,prints_Peptidase_M2	-	no_errors	ACE	HGNC	ENSG00000159640				33	0	0	44	7	13.7255
KCNH6	0	genome.wustl.edu	37	17	61611428	61611428	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	61611428	61611428	A	G	SNP	KCNH6	ENST00000583023	human	ensembl	74_37	+1	known	missense	c.857	p.D286G	1.000	NULL	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_2pore_dom_K_chnl_dom,pfam_PAS_fold,superfamily_cNMP-bd-like,superfamily_PAS,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,prints_K_chnl_volt-dep_ELK,prints_2pore_dom_K_chnl,pfscan_cNMP-bd_dom	-	no_errors	KCNH6	HGNC	ENSG00000173826				153	0	0	145	10	6.45161
DCAF7	0	genome.wustl.edu	37	17	61628105	61628105	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	61628105	61628105	A	T	SNP	DCAF7	ENST00000310827	human	ensembl	74_37	+1	known	missense	c.67	p.N23Y	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF7	HGNC	ENSG00000136485				50	0	0	70	6	7.89474
FTSJ3	0	genome.wustl.edu	37	17	61902762	61902762	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	61902762	61902762	A	G	SNP	FTSJ3	ENST00000427159	human	ensembl	74_37	-1	known	silent	c.435	p.C145	1.000	pfam_rRNA_MeTrfase_FtsJ_dom	pfam_rRNA_MeTfrase_Spb1_C,pfam_rRNA_MeTrfase_FtsJ_dom,pfam_rRNA_MeTfrase_Spb1_DUF3381	-	no_errors	FTSJ3	HGNC	ENSG00000108592				64	0	0	68	5	6.84932
SMARCD2	0	genome.wustl.edu	37	17	61914568	61914568	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	61914568	61914568	A	G	SNP	SMARCD2	ENST00000448276	human	ensembl	74_37	-1	known	missense	c.431	p.V144A	1.000	NULL	pfam_SWIB_MDM2_domain,superfamily_SWIB_MDM2_domain,smart_SWIB_domain	-	no_errors	SMARCD2	HGNC	ENSG00000108604				50	0	0	45	6	11.7647
ERN1	0	genome.wustl.edu	37	17	62135346	62135346	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	62135346	62135346	T	C	SNP	ERN1	ENST00000433197	human	ensembl	74_37	-1	known	missense	c.1214	p.N405S	0.998	NULL	pfam_Prot_kinase_dom,pfam_KEN_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Quinonprotein_ADH-like_supfam,smart_PQQ_beta_propeller_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PUG-dom,pfscan_Prot_kinase_dom	-	no_errors	ERN1	HGNC	ENSG00000178607				18	0	0	8	4	33.3333
TEX2	0	genome.wustl.edu	37	17	62290313	62290313	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	62290313	62290313	T	C	SNP	TEX2	ENST00000258991	human	ensembl	74_37	-1	known	missense	c.1265	p.Y422C	1.000	NULL	pfam_DUF2404	-	no_errors	TEX2	HGNC	ENSG00000136478				143	0	0	157	9	5.42169
POLG2	0	genome.wustl.edu	37	17	62492909	62492909	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	62492909	62492909	G	A	SNP	POLG2	ENST00000539111	human	ensembl	74_37	-1	known	missense	c.178	p.P60S	0.763	NULL	pfam_Anticodon-bd,superfamily_Anticodon-bd	-	no_errors	POLG2	HGNC	ENSG00000256525				99	0	0	115	27	19.0141
DDX5	0	genome.wustl.edu	37	17	62496396	62496396	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	62496396	62496396	T	C	SNP	DDX5	ENST00000225792	human	ensembl	74_37	-1	known	missense	c.1490	p.Y497C	1.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_P68HR,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX5	HGNC	ENSG00000108654				154	0	0	103	25	19.5312
CEP95	0	genome.wustl.edu	37	17	62523239	62523239	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	62523239	62523239	G	T	SNP	CEP95	ENST00000556440	human	ensembl	74_37	+1	known	missense	c.1163	p.S388I	0.724	NULL	superfamily_CH-domain	-	no_errors	CEP95	HGNC	ENSG00000258890				103	0	0	68	4	5.55556
LRRC37A3	0	genome.wustl.edu	37	17	62856650	62856650	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	62856650	62856650	C	T	SNP	LRRC37A3	ENST00000319651	human	ensembl	74_37	-1	known	missense	c.3614	p.R1205K	0.016	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC37A3	HGNC	ENSG00000176809				155	0	0	141	12	7.84314
RGS9	0	genome.wustl.edu	37	17	63221501	63221501	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	63221501	63221501	G	A	SNP	RGS9	ENST00000262406	human	ensembl	74_37	+1	known	missense	c.1789	p.A597T	1.000	NULL	pfam_RGS_dom,pfam_G-protein_gamma-like_dom,pfam_DEP_dom,superfamily_Regulat_G_prot_signal_superfam,superfamily_G-protein_gamma-like_dom,smart_DEP_dom,smart_G-protein_gamma-like_dom,smart_Regulat_G_prot_signal_superfam,pfscan_DEP_dom,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS9	HGNC	ENSG00000108370				102	0	0	113	12	9.6
AIPL1	0	genome.wustl.edu	37	17	6329092	6329092	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	6329092	6329092	G	A	SNP	AIPL1	ENST00000381129	human	ensembl	74_37	-1	known	silent	c.843	p.A281	0.084	smart_TPR_repeat,pfscan_TPR-contain_dom	pfam_PPIase_FKBP_dom,smart_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	AIPL1	HGNC	ENSG00000129221				25	0	0	37	7	15.9091
AXIN2	0	genome.wustl.edu	37	17	63533080	63533080	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	63533080	63533080	G	A	SNP	AXIN2	ENST00000307078	human	ensembl	74_37	-1	known	missense	c.1814	p.A605V	0.000	NULL	pfam_DIX,pfam_RGS_dom,pfam_Axin_b-cat-bd,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,smart_DIX,pfscan_DIX,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	AXIN2	HGNC	ENSG00000168646				65	0	0	67	6	8.21918
PITPNM3	0	genome.wustl.edu	37	17	6377778	6377778	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	6377778	6377778	C	T	SNP	PITPNM3	ENST00000262483	human	ensembl	74_37	-1	known	missense	c.1232	p.R411Q	1.000	pfam_DDHD,pfscan_DDHD	pfam_DDHD,pfam_LNS2,superfamily_HAD-like_dom,smart_LNS2,pfscan_DDHD	-	no_errors	PITPNM3	HGNC	ENSG00000091622				28	0	0	30	4	11.7647
CACNG1	0	genome.wustl.edu	37	17	65040890	65040890	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	65040890	65040890	C	T	SNP	CACNG1	ENST00000226021	human	ensembl	74_37	+1	known	silent	c.114	p.H38	0.158	pfam_PMP22/EMP/MP20/Claudin,prints_VDCC_g1su	pfam_PMP22/EMP/MP20/Claudin,prints_VDCC_g1su,prints_VDCC_gsu	-	no_errors	CACNG1	HGNC	ENSG00000108878				45	0	0	52	9	14.7541
KPNA2	0	genome.wustl.edu	37	17	66040035	66040035	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	66040035	66040035	G	A	SNP	KPNA2	ENST00000330459	human	ensembl	74_37	+1	known	missense	c.1012	p.A338T	0.994	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	pfam_Armadillo,pfam_Importin-a_IBB,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo,pfscan_Importin-a_IBB	-	no_errors	KPNA2	HGNC	ENSG00000182481				269	0	0	217	24	9.95851
ARSG	0	genome.wustl.edu	37	17	66416413	66416413	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	66416413	66416413	G	A	SNP	ARSG	ENST00000448504	human	ensembl	74_37	+1	known	missense	c.1387	p.A463T	0.022	superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	-	no_errors	ARSG	HGNC	ENSG00000141337				90	0	0	68	27	28.4211
FAM20A	0	genome.wustl.edu	37	17	66551755	66551755	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	66551755	66551755	G	A	SNP	FAM20A	ENST00000592554	human	ensembl	74_37	-1	known	silent	c.534	p.S178	0.436	NULL	pfam_DUF1193	-	no_errors	FAM20A	HGNC	ENSG00000108950				76	0	0	87	5	5.43478
FBXO39	0	genome.wustl.edu	37	17	6683582	6683582	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	6683582	6683582	A	G	SNP	FBXO39	ENST00000321535	human	ensembl	74_37	+1	known	missense	c.395	p.Q132R	1.000	NULL	NULL	-	no_errors	FBXO39	HGNC	ENSG00000177294				83	0	0	71	8	10.1266
ABCA9	0	genome.wustl.edu	37	17	67041327	67041327	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	67041327	67041327	T	C	SNP	ABCA9	ENST00000340001	human	ensembl	74_37	-1	known	missense	c.455	p.H152R	0.945	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA9	HGNC	ENSG00000154258				73	0	0	50	4	7.40741
ABCA9	0	genome.wustl.edu	37	17	67047255	67047255	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	67047255	67047255	G	A	SNP	ABCA9	ENST00000340001	human	ensembl	74_37	-1	known	missense	c.13	p.R5C	0.003	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA9	HGNC	ENSG00000154258				79	0	0	51	19	27.1429
ABCA5	0	genome.wustl.edu	37	17	67250502	67250502	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	67250502	67250502	C	T	SNP	ABCA5	ENST00000392677	human	ensembl	74_37	-1	known	missense	c.4201	p.A1401T	1.000	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA5	HGNC	ENSG00000154265				168	0	0	99	8	7.47664
ABCA5	0	genome.wustl.edu	37	17	67293435	67293435	+	Silent	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	67293435	67293435	T	G	SNP	ABCA5	ENST00000392677	human	ensembl	74_37	-1	known	silent	c.1333	p.R445	1.000	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA5	HGNC	ENSG00000154265				155	0	0	88	14	13.7255
ALOX12	0	genome.wustl.edu	37	17	6909216	6909216	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	6909216	6909216	C	A	SNP	ALOX12	ENST00000251535	human	ensembl	74_37	+1	known	missense	c.1288	p.R430S	0.000	pfam_LipOase_C,superfamily_LipOase_C,prints_LipOase_mml	pfam_LipOase_C,pfam_PLAT/LH2_dom,superfamily_LipOase_C,superfamily_Lipase_LipOase,smart_PLAT/LH2_dom,pfscan_PLAT/LH2_dom,prints_LipOase_mml,prints_LipOase_C	-	no_errors	ALOX12	HGNC	ENSG00000108839				67	0	0	52	6	10.3448
NXN	0	genome.wustl.edu	37	17	704358	704358	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	704358	704358	T	A	SNP	NXN	ENST00000336868	human	ensembl	74_37	-1	known	missense	c.1139	p.D380V	1.000	superfamily_Thioredoxin-like_fold	pfam_AhpC/TSA,pfam_Redoxin,superfamily_Thioredoxin-like_fold	-	no_errors	NXN	HGNC	ENSG00000167693				42	0	0	40	6	13.0435
SSTR2	0	genome.wustl.edu	37	17	71166456	71166456	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	71166456	71166456	G	A	SNP	SSTR2	ENST00000357585	human	ensembl	74_37	+1	known	missense	c.998	p.S333N	1.000	prints_Somatstn_rcpt_2	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Somatstn_rcpt_2,prints_GPCR_Rhodpsn,prints_Somatstn_rcpt,prints_Neuropept_B/W_rcpt,prints_Opioid_rcpt,prints_NPY_rcpt,prints_Somatstn_rcpt_5	-	no_errors	SSTR2	HGNC	ENSG00000180616				77	0	0	75	6	7.40741
COG1	0	genome.wustl.edu	37	17	71199167	71199167	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	71199167	71199167	T	C	SNP	COG1	ENST00000299886	human	ensembl	74_37	+1	known	missense	c.2102	p.L701S	0.870	NULL	NULL	-	no_errors	COG1	HGNC	ENSG00000166685				105	0	0	77	6	7.22892
C17orf80	0	genome.wustl.edu	37	17	71232596	71232596	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	71232596	71232596	G	A	SNP	C17orf80	ENST00000359042	human	ensembl	74_37	+1	known	silent	c.975	p.R325	0.000	NULL	NULL	-	no_errors	C17orf80	HGNC	ENSG00000141219				32	0	0	36	3	7.69231
C17orf80	0	genome.wustl.edu	37	17	71239049	71239049	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	71239049	71239049	A	G	SNP	C17orf80	ENST00000359042	human	ensembl	74_37	+1	known	missense	c.1636	p.N546D	0.028	NULL	NULL	-	no_errors	C17orf80	HGNC	ENSG00000141219				49	0	0	40	7	14.8936
CDC42EP4	0	genome.wustl.edu	37	17	71282494	71282494	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	71282494	71282494	T	A	SNP	CDC42EP4	ENST00000335793	human	ensembl	74_37	-1	known	missense	c.146	p.D49V	1.000	pfam_CRIB_dom,smart_CRIB_dom	pfam_CRIB_dom,smart_CRIB_dom,pfscan_CRIB_dom	-	no_errors	CDC42EP4	HGNC	ENSG00000179604				67	0	0	65	5	7.14286
TTYH2	0	genome.wustl.edu	37	17	72227099	72227099	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	72227099	72227099	G	T	SNP	TTYH2	ENST00000269346	human	ensembl	74_37	+1	known	missense	c.375	p.L125F	0.999	pfam_Tweety	pfam_Tweety	-	no_errors	TTYH2	HGNC	ENSG00000141540				98	0	0	87	8	8.42105
TTYH2	0	genome.wustl.edu	37	17	72249893	72249893	+	Splice_Site	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	72249893	72249893	G	A	SNP	TTYH2	ENST00000269346	human	ensembl	74_37	+1	known	splice_site	c.1446-1	e13-1	1.000	-	-	-	no_errors	TTYH2	HGNC	ENSG00000141540				66	0	0	73	7	8.75
NEURL4	0	genome.wustl.edu	37	17	7229645	7229645	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	7229645	7229645	C	T	SNP	NEURL4	ENST00000399464	human	ensembl	74_37	-1	known	missense	c.1222	p.G408S	1.000	smart_Neu_Z,pfscan_Neu_Z	pfam_Neu_Z,superfamily_ConA-like_lec_gl_sf,smart_Neu_Z,pfscan_Neu_Z	-	no_errors	NEURL4	HGNC	ENSG00000215041				34	0	0	24	7	22.5806
KIF19	0	genome.wustl.edu	37	17	72340925	72340925	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	72340925	72340925	A	G	SNP	KIF19	ENST00000389916	human	ensembl	74_37	+1	known	missense	c.608	p.N203S	1.000	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	-	no_errors	KIF19	HGNC	ENSG00000196169				70	0	0	44	16	26.6667
KIF19	0	genome.wustl.edu	37	17	72351389	72351389	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	72351389	72351389	G	T	SNP	KIF19	ENST00000389916	human	ensembl	74_37	+1	known	missense	c.2935	p.G979W	0.013	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	-	no_errors	KIF19	HGNC	ENSG00000196169				34	0	0	39	6	13.3333
GPR142	0	genome.wustl.edu	37	17	72368331	72368331	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	72368331	72368331	C	T	SNP	GPR142	ENST00000335666	human	ensembl	74_37	+1	known	silent	c.981	p.G327	0.976	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR142	HGNC	ENSG00000257008				23	0	0	33	5	13.1579
CD300LB	0	genome.wustl.edu	37	17	72521943	72521943	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	72521943	72521943	C	A	SNP	CD300LB	ENST00000392621	human	ensembl	74_37	-1	known	missense	c.425	p.G142V	1.000	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	CD300LB	HGNC	ENSG00000178789				211	1	0.471698	164	48	22.6415
NAT9	0	genome.wustl.edu	37	17	72768367	72768367	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	72768367	72768367	C	T	SNP	NAT9	ENST00000357814	human	ensembl	74_37	-1	known	missense	c.384	p.M128I	1.000	pfam_GNAT_dom,pfam_FR47,superfamily_Acyl_CoA_acyltransferase	pfam_GNAT_dom,pfam_FR47,superfamily_Acyl_CoA_acyltransferase	-	no_errors	NAT9	HGNC	ENSG00000109065				34	0	0	27	4	12.9032
FDXR	0	genome.wustl.edu	37	17	72861880	72861880	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	72861880	72861880	G	A	SNP	FDXR	ENST00000581530	human	ensembl	74_37	-1	known	silent	c.570	p.D190	0.786	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD	-	no_errors	FDXR	HGNC	ENSG00000161513				35	0	0	27	10	27.027
FDXR	0	genome.wustl.edu	37	17	72862566	72862566	+	Splice_Site	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	72862566	72862566	A	G	SNP	FDXR	ENST00000581530	human	ensembl	74_37	-1	known	splice_site	c.393+2	e4+2	1.000	-	-	-	no_errors	FDXR	HGNC	ENSG00000161513				14	0	0	10	4	28.5714
OTOP3	0	genome.wustl.edu	37	17	72943337	72943337	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	72943337	72943337	G	A	SNP	OTOP3	ENST00000328801	human	ensembl	74_37	+1	known	missense	c.1387	p.A463T	0.750	pfam_Otopetrin	pfam_Otopetrin	-	no_errors	OTOP3	HGNC	ENSG00000182938				35	0	0	21	7	25
SLC16A5	0	genome.wustl.edu	37	17	73089824	73089824	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	73089824	73089824	C	T	SNP	SLC16A5	ENST00000329783	human	ensembl	74_37	+1	known	silent	c.93	p.P31	0.099	superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Monocarb_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Monocarb_transpt	-	no_errors	SLC16A5	HGNC	ENSG00000170190				79	0	0	78	23	22.7723
CASKIN2	0	genome.wustl.edu	37	17	73500972	73500972	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	73500972	73500972	C	T	SNP	CASKIN2	ENST00000321617	human	ensembl	74_37	-1	known	silent	c.1113	p.P371	0.000	superfamily_SH3_domain	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_SAM_2,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SAM,pfscan_SH3_domain,prints_Ankyrin_rpt	-	no_errors	CASKIN2	HGNC	ENSG00000177303				29	0	0	28	2	6.66667
CHRNB1	0	genome.wustl.edu	37	17	7351977	7351977	+	Silent	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	7351977	7351977	A	T	SNP	CHRNB1	ENST00000306071	human	ensembl	74_37	+1	known	silent	c.690	p.G230	0.999	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNB1	HGNC	ENSG00000170175				65	0	0	54	6	10
SAP30BP	0	genome.wustl.edu	37	17	73664707	73664707	+	Splice_Site	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	73664707	73664707	T	C	SNP	SAP30BP	ENST00000584667	human	ensembl	74_37	+1	known	splice_site	c.216+2	e2+2	1.000	-	-	-	no_errors	SAP30BP	HGNC	ENSG00000161526				69	0	0	45	6	11.7647
UNC13D	0	genome.wustl.edu	37	17	73831532	73831532	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	73831532	73831532	G	A	SNP	UNC13D	ENST00000412096	human	ensembl	74_37	-1	known	silent	c.1806	p.N602	0.526	NULL	pfam_C2_dom,pfam_Munc13_subgr_dom-2,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	UNC13D	HGNC	ENSG00000092929				20	0	0	16	3	15.7895
ACOX1	0	genome.wustl.edu	37	17	73956385	73956385	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	73956385	73956385	T	C	SNP	ACOX1	ENST00000293217	human	ensembl	74_37	-1	known	missense	c.341	p.Q114R	1.000	superfamily_AcylCoA_DH/oxidase_NM_dom,pirsf_Acyl-CoA_oxidase	pfam_Acyl-CoA_oxidase_C,pfam_Acyl-CoA_Oxase/DH_cen-dom,superfamily_AcylCo_DH/oxidase_C,superfamily_AcylCoA_DH/oxidase_NM_dom,pirsf_Acyl-CoA_oxidase	-	no_errors	ACOX1	HGNC	ENSG00000161533				57	0	0	35	7	16.6667
CDK3	0	genome.wustl.edu	37	17	73998612	73998612	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	73998612	73998612	C	T	SNP	CDK3	ENST00000425876	human	ensembl	74_37	+1	known	silent	c.507	p.R169	0.920	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDK3	HGNC	ENSG00000250506				67	0	0	67	7	9.45946
EVPL	0	genome.wustl.edu	37	17	74003870	74003870	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	74003870	74003870	G	A	SNP	EVPL	ENST00000301607	human	ensembl	74_37	-1	known	missense	c.5416	p.P1806S	0.002	NULL	pfam_Plectin_repeat,superfamily_Ferritin-like_SF,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	EVPL	HGNC	ENSG00000167880				94	0	0	105	11	9.48276
EVPL	0	genome.wustl.edu	37	17	74013872	74013872	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	74013872	74013872	A	T	SNP	EVPL	ENST00000301607	human	ensembl	74_37	-1	known	missense	c.1658	p.L553Q	0.995	NULL	pfam_Plectin_repeat,superfamily_Ferritin-like_SF,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	EVPL	HGNC	ENSG00000167880				53	0	0	53	4	7.01754
RNF157	0	genome.wustl.edu	37	17	74163130	74163130	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	74163130	74163130	G	T	SNP	RNF157	ENST00000269391	human	ensembl	74_37	-1	known	missense	c.521	p.P174H	1.000	NULL	smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF157	HGNC	ENSG00000141576				111	1	0.892857	95	19	16.6667
PRPSAP1	0	genome.wustl.edu	37	17	74307730	74307730	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	74307730	74307730	T	C	SNP	PRPSAP1	ENST00000446526	human	ensembl	74_37	-1	known	missense	c.1051	p.K351E	1.000	tigrfam_Rib-P_diPkinase	tigrfam_Rib-P_diPkinase	-	no_errors	PRPSAP1	HGNC	ENSG00000161542				105	0	0	82	9	9.89011
SPHK1	0	genome.wustl.edu	37	17	74383020	74383020	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	74383020	74383020	G	A	SNP	SPHK1	ENST00000323374	human	ensembl	74_37	+1	known	missense	c.766	p.A256T	1.000	NULL	pfam_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kinase_cat_dom	-	no_errors	SPHK1	HGNC	ENSG00000176170				69	0	0	74	13	14.9425
UBE2O	0	genome.wustl.edu	37	17	74387043	74387043	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	74387043	74387043	T	C	SNP	UBE2O	ENST00000319380	human	ensembl	74_37	-1	known	missense	c.3860	p.E1287G	0.980	NULL	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	-	no_errors	UBE2O	HGNC	ENSG00000175931				103	0	0	121	10	7.63359
UBE2O	0	genome.wustl.edu	37	17	74394418	74394418	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	74394418	74394418	T	C	SNP	UBE2O	ENST00000319380	human	ensembl	74_37	-1	known	missense	c.1943	p.H648R	1.000	NULL	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	-	no_errors	UBE2O	HGNC	ENSG00000175931				318	1	0.31348	289	37	11.3497
UBE2O	0	genome.wustl.edu	37	17	74395720	74395720	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	74395720	74395720	C	T	SNP	UBE2O	ENST00000319380	human	ensembl	74_37	-1	known	missense	c.1438	p.A480T	0.973	NULL	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	-	no_errors	UBE2O	HGNC	ENSG00000175931				85	0	0	81	19	19
SENP3	0	genome.wustl.edu	37	17	7468286	7468286	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	7468286	7468286	C	T	SNP	SENP3	ENST00000429205	human	ensembl	74_37	+1	known	silent	c.966	p.D322	1.000	NULL	pfam_Peptidase_C48,pfscan_Peptidase_C48	-	no_errors	SENP3	HGNC	ENSG00000161956				44	0	0	35	11	23.913
SEC14L1	0	genome.wustl.edu	37	17	75209491	75209491	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	75209491	75209491	C	T	SNP	SEC14L1	ENST00000392476	human	ensembl	74_37	+1	known	silent	c.1959	p.D653	1.000	superfamily_GOLD,pfscan_GOLD	pfam_PRELI/MSF1,pfam_CRAL-TRIO_dom,pfam_CRAL/TRIO_N_dom,superfamily_CRAL-TRIO_dom,superfamily_CRAL/TRIO_N_dom,superfamily_GOLD,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_GOLD,pfscan_PRELI/MSF1	-	no_errors	SEC14L1	HGNC	ENSG00000129657				41	0	0	43	4	8.51064
SEC14L1	0	genome.wustl.edu	37	17	75210055	75210055	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	75210055	75210055	G	A	SNP	SEC14L1	ENST00000392476	human	ensembl	74_37	+1	known	missense	c.2098	p.A700T	1.000	NULL	pfam_PRELI/MSF1,pfam_CRAL-TRIO_dom,pfam_CRAL/TRIO_N_dom,superfamily_CRAL-TRIO_dom,superfamily_CRAL/TRIO_N_dom,superfamily_GOLD,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_GOLD,pfscan_PRELI/MSF1	-	no_errors	SEC14L1	HGNC	ENSG00000129657				76	0	0	53	9	14.5161
SEPT9	0	genome.wustl.edu	37	17	75478396	75478396	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	75478396	75478396	G	A	SNP	SEPT9	ENST00000427177	human	ensembl	74_37	+1	known	missense	c.892	p.E298K	1.000	pfam_Cell_div_GTP-bd,superfamily_P-loop_NTPase	pfam_Cell_div_GTP-bd,pfam_Ribosome_biogen_GTPase_RsgA,pfam_AIG1,superfamily_P-loop_NTPase	-	no_errors	SEPT9	HGNC	ENSG00000184640				44	0	0	29	6	17.1429
TNRC6C	0	genome.wustl.edu	37	17	76046762	76046762	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	76046762	76046762	C	T	SNP	TNRC6C	ENST00000335749	human	ensembl	74_37	+1	known	missense	c.1619	p.S540L	0.950	NULL	pfam_Argonaute_hook_dom,pfam_UBA/Ts_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	TNRC6C	HGNC	ENSG00000078687				117	0	0	89	23	20.5357
WRAP53	0	genome.wustl.edu	37	17	7604986	7604986	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	7604986	7604986	G	A	SNP	WRAP53	ENST00000316024	human	ensembl	74_37	+1	known	silent	c.834	p.T278	0.894	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WRAP53	HGNC	ENSG00000141499				93	0	0	93	9	8.82353
TMC8	0	genome.wustl.edu	37	17	76128901	76128901	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	76128901	76128901	C	T	SNP	TMC8	ENST00000318430	human	ensembl	74_37	+1	known	missense	c.481	p.P161S	0.003	NULL	pfam_TMC	-	no_errors	TMC8	HGNC	ENSG00000167895				95	0	0	118	8	6.34921
DNAH17	0	genome.wustl.edu	37	17	76471424	76471424	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	76471424	76471424	T	C	SNP	DNAH17	ENST00000389840	human	ensembl	74_37	-1	known	missense	c.8405	p.Y2802C	0.999	superfamily_P-loop_NTPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_HR1_rho-bd	-	no_errors	DNAH17	HGNC	ENSG00000187775				96	0	0	94	8	7.84314
LGALS3BP	0	genome.wustl.edu	37	17	76968044	76968044	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	76968044	76968044	A	G	SNP	LGALS3BP	ENST00000262776	human	ensembl	74_37	-1	known	missense	c.1372	p.Y458H	0.000	NULL	pfam_SRCR,pfam_BACK,superfamily_Srcr_rcpt-rel,superfamily_BTB/POZ_fold,smart_Srcr_rcpt-rel,smart_BACK,pfscan_BTB/POZ-like,pfscan_SRCR,prints_SRCR	-	no_errors	LGALS3BP	HGNC	ENSG00000108679				54	0	0	46	5	9.80392
DNAH2	0	genome.wustl.edu	37	17	7710589	7710589	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	7710589	7710589	C	T	SNP	DNAH2	ENST00000389173	human	ensembl	74_37	+1	known	silent	c.9564	p.R3188	0.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH2	HGNC	ENSG00000183914				138	0	0	116	10	7.93651
DNAH2	0	genome.wustl.edu	37	17	7727218	7727218	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	7727218	7727218	G	A	SNP	DNAH2	ENST00000389173	human	ensembl	74_37	+1	known	missense	c.11396	p.R3799H	1.000	pfam_Dynein_heavy_dom	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH2	HGNC	ENSG00000183914				60	0	0	55	11	16.6667
DNAH2	0	genome.wustl.edu	37	17	7727556	7727556	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	7727556	7727556	G	A	SNP	DNAH2	ENST00000389173	human	ensembl	74_37	+1	known	missense	c.11596	p.A3866T	0.998	pfam_Dynein_heavy_dom	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH2	HGNC	ENSG00000183914				49	0	0	37	7	15.9091
CBX8	0	genome.wustl.edu	37	17	77770303	77770303	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	77770303	77770303	A	G	SNP	CBX8	ENST00000269385	human	ensembl	74_37	-1	known	missense	c.106	p.S36P	1.000	pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow	pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow	-	no_errors	CBX8	HGNC	ENSG00000141570				108	0	0	82	19	18.8119
CBX4	0	genome.wustl.edu	37	17	77807929	77807929	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	77807929	77807929	C	T	SNP	CBX4	ENST00000269397	human	ensembl	74_37	-1	known	silent	c.1512	p.A504	0.041	NULL	pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,prints_Chromo_dom_subgr,pfscan_Chromo_domain/shadow	-	no_errors	CBX4	HGNC	ENSG00000141582				62	0	0	52	8	13.3333
CCDC40	0	genome.wustl.edu	37	17	78069165	78069165	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	78069165	78069165	G	A	SNP	CCDC40	ENST00000397545	human	ensembl	74_37	+1	known	missense	c.2936	p.R979H	0.871	NULL	pfam_E3_ubiquit_lig_BRE1	-	no_errors	CCDC40	HGNC	ENSG00000141519				63	0	0	62	5	7.46269
CHD3	0	genome.wustl.edu	37	17	7814196	7814196	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	7814196	7814196	C	T	SNP	CHD3	ENST00000330494	human	ensembl	74_37	+1	known	missense	c.5786	p.P1929L	1.000	NULL	pfam_CHD_C2,pfam_SNF2_N,pfam_DUF1086,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD3	HGNC	ENSG00000170004				140	0	0	153	37	19.4737
SLC26A11	0	genome.wustl.edu	37	17	78195462	78195462	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	78195462	78195462	C	T	SNP	SLC26A11	ENST00000361193	human	ensembl	74_37	+1	known	missense	c.103	p.P35S	1.000	NULL	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom	-	no_errors	SLC26A11	HGNC	ENSG00000181045				36	0	0	38	3	7.31707
SLC26A11	0	genome.wustl.edu	37	17	78210898	78210898	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	78210898	78210898	T	C	SNP	SLC26A11	ENST00000361193	human	ensembl	74_37	+1	known	missense	c.908	p.V303A	0.992	pfam_Sulph_transpt	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom	-	no_errors	SLC26A11	HGNC	ENSG00000181045				45	0	0	54	4	6.89655
RNF213	0	genome.wustl.edu	37	17	78280153	78280153	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	78280153	78280153	T	C	SNP	RNF213	ENST00000582970	human	ensembl	74_37	+1	known	missense	c.2312	p.V771A	0.000	NULL	superfamily_P-loop_NTPase,smart_AAA+_ATPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF213	HGNC	ENSG00000173821				134	0	0	117	9	7.14286
RNF213	0	genome.wustl.edu	37	17	78314040	78314040	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	78314040	78314040	C	T	SNP	RNF213	ENST00000582970	human	ensembl	74_37	+1	known	missense	c.5873	p.A1958V	0.005	NULL	superfamily_P-loop_NTPase,smart_AAA+_ATPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF213	HGNC	ENSG00000173821				34	0	0	34	4	10.5263
RNF213	0	genome.wustl.edu	37	17	78318781	78318781	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	78318781	78318781	C	T	SNP	RNF213	ENST00000582970	human	ensembl	74_37	+1	known	missense	c.6646	p.R2216W	0.001	NULL	superfamily_P-loop_NTPase,smart_AAA+_ATPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF213	HGNC	ENSG00000173821				153	0	0	98	37	27.4074
RNF213	0	genome.wustl.edu	37	17	78321547	78321547	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	78321547	78321547	G	A	SNP	RNF213	ENST00000582970	human	ensembl	74_37	+1	known	missense	c.9412	p.V3138I	1.000	superfamily_P-loop_NTPase	superfamily_P-loop_NTPase,smart_AAA+_ATPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF213	HGNC	ENSG00000173821				51	0	0	52	20	27.7778
RNF213	0	genome.wustl.edu	37	17	78321938	78321938	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	78321938	78321938	T	C	SNP	RNF213	ENST00000582970	human	ensembl	74_37	+1	known	missense	c.9803	p.V3268A	1.000	superfamily_P-loop_NTPase	superfamily_P-loop_NTPase,smart_AAA+_ATPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF213	HGNC	ENSG00000173821				63	0	0	68	9	11.6883
RNF213	0	genome.wustl.edu	37	17	78343340	78343340	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	78343340	78343340	G	A	SNP	RNF213	ENST00000582970	human	ensembl	74_37	+1	known	missense	c.12194	p.C4065Y	1.000	NULL	superfamily_P-loop_NTPase,smart_AAA+_ATPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF213	HGNC	ENSG00000173821				159	0	0	128	9	6.56934
RNF213	0	genome.wustl.edu	37	17	78360533	78360533	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	78360533	78360533	A	C	SNP	RNF213	ENST00000582970	human	ensembl	74_37	+1	known	missense	c.14764	p.S4922R	1.000	NULL	superfamily_P-loop_NTPase,smart_AAA+_ATPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF213	HGNC	ENSG00000173821				100	0	0	99	7	6.60377
CNTROB	0	genome.wustl.edu	37	17	7842846	7842846	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	7842846	7842846	G	T	SNP	CNTROB	ENST00000380262	human	ensembl	74_37	+1	known	missense	c.943	p.A315S	0.999	NULL	NULL	-	no_errors	CNTROB	HGNC	ENSG00000170037				161	0	0	146	13	8.1761
GUCY2D	0	genome.wustl.edu	37	17	7906918	7906918	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	7906918	7906918	G	A	SNP	GUCY2D	ENST00000254854	human	ensembl	74_37	+1	known	missense	c.553	p.A185T	0.995	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_A/G_cyclase,pfam_ANF_lig-bd_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Haem_no_assoc-bd,superfamily_Peripla_BP_I,superfamily_A/G_cyclase,superfamily_Kinase-like_dom,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_A/G_cyclase,pfscan_Prot_kinase_dom,pfscan_A/G_cyclase,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	GUCY2D	HGNC	ENSG00000132518				11	0	0	15	3	16.6667
AZI1	0	genome.wustl.edu	37	17	79177336	79177336	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	79177336	79177336	G	A	SNP	AZI1	ENST00000269392	human	ensembl	74_37	-1	known	missense	c.587	p.A196V	0.000	NULL	superfamily_t-SNARE	-	no_errors	AZI1	HGNC	ENSG00000141577				16	0	0	14	3	17.6471
SLC38A10	0	genome.wustl.edu	37	17	79226324	79226324	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	79226324	79226324	G	A	SNP	SLC38A10	ENST00000374759	human	ensembl	74_37	-1	known	missense	c.1616	p.A539V	0.000	NULL	pfam_AA_transpt_TM	-	no_errors	SLC38A10	HGNC	ENSG00000157637				82	0	0	63	21	25
SLC38A10	0	genome.wustl.edu	37	17	79254484	79254484	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	79254484	79254484	C	A	SNP	SLC38A10	ENST00000374759	human	ensembl	74_37	-1	known	missense	c.551	p.R184L	0.993	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC38A10	HGNC	ENSG00000157637				24	0	0	27	3	10
ALOX15B	0	genome.wustl.edu	37	17	7951813	7951813	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	7951813	7951813	G	A	SNP	ALOX15B	ENST00000380183	human	ensembl	74_37	+1	known	missense	c.1961	p.R654Q	0.972	pfam_LipOase_C,superfamily_LipOase_C	pfam_LipOase_C,pfam_PLAT/LH2_dom,superfamily_LipOase_C,superfamily_Lipase_LipOase,smart_PLAT/LH2_dom,pfscan_PLAT/LH2_dom,prints_LipOase_mml,prints_LipOase_C	-	no_errors	ALOX15B	HGNC	ENSG00000179593				61	0	0	45	14	23.7288
SLC25A10	0	genome.wustl.edu	37	17	79687071	79687071	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	79687071	79687071	G	T	SNP	SLC25A10	ENST00000541223	human	ensembl	74_37	+1	known	missense	c.1293	p.Q431H	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_uncoupling	pfam_Mitochondrial_sb/sol_carrier,pfam_Ribosomal_L7/L12_C,superfamily_Mt_carrier_dom,superfamily_Ribosomal_L7/L12_oligo,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_uncoupling	-	no_errors	SLC25A10	HGNC	ENSG00000183048				81	0	0	71	6	7.79221
P4HB	0	genome.wustl.edu	37	17	79804462	79804462	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	79804462	79804462	C	T	SNP	P4HB	ENST00000331483	human	ensembl	74_37	-1	known	missense	c.899	p.R300H	1.000	superfamily_Thioredoxin-like_fold,tigrfam_Prot_disulphide_isomerase	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold,prints_Thioredoxin,tigrfam_Prot_disulphide_isomerase,tigrfam_Disulphide_isomerase	-	no_errors	P4HB	HGNC	ENSG00000185624				52	0	0	45	7	13.4615
ARHGDIA	0	genome.wustl.edu	37	17	79826767	79826767	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	79826767	79826767	C	A	SNP	ARHGDIA	ENST00000269321	human	ensembl	74_37	-1	known	missense	c.600	p.K200N	1.000	pfam_Rho_GDI,superfamily_Ig_E-set	pfam_Rho_GDI,superfamily_Ig_E-set,prints_Rho_GDI	-	no_errors	ARHGDIA	HGNC	ENSG00000141522				65	0	0	62	8	11.4286
SIRT7	0	genome.wustl.edu	37	17	79873553	79873553	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	79873553	79873553	G	A	SNP	SIRT7	ENST00000328666	human	ensembl	74_37	-1	known	missense	c.341	p.A114V	1.000	pfscan_Ssirtuin_cat_dom	pfam_Sirtuin,pfscan_Ssirtuin_cat_dom	-	no_errors	SIRT7	HGNC	ENSG00000187531				26	0	0	18	3	14.2857
RAC3	0	genome.wustl.edu	37	17	79990609	79990609	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	79990609	79990609	G	A	SNP	RAC3	ENST00000306897	human	ensembl	74_37	+1	known	missense	c.130	p.V44M	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAC3	HGNC	ENSG00000169750				75	0	0	56	27	32.5301
GPS1	0	genome.wustl.edu	37	17	80011878	80011878	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	80011878	80011878	C	T	SNP	GPS1	ENST00000355130	human	ensembl	74_37	+1	known	silent	c.381	p.N127	0.783	NULL	pfam_26S_proteasome_reg_su-Rpn7,pfam_PCI_dom,smart_PCI_dom	-	no_errors	GPS1	HGNC	ENSG00000169727				17	0	0	20	9	31.0345
GPS1	0	genome.wustl.edu	37	17	80014394	80014394	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	80014394	80014394	T	C	SNP	GPS1	ENST00000355130	human	ensembl	74_37	+1	known	missense	c.1204	p.Y402H	1.000	pfam_PCI_dom,smart_PCI_dom	pfam_26S_proteasome_reg_su-Rpn7,pfam_PCI_dom,smart_PCI_dom	-	no_errors	GPS1	HGNC	ENSG00000169727				33	0	0	29	3	9.375
CCDC57	0	genome.wustl.edu	37	17	80136446	80136446	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	80136446	80136446	T	C	SNP	CCDC57	ENST00000389641	human	ensembl	74_37	-1	known	silent	c.1410	p.L470	0.064	NULL	NULL	-	no_errors	CCDC57	HGNC	ENSG00000176155				27	0	0	30	8	21.0526
CCDC57	0	genome.wustl.edu	37	17	80159603	80159603	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	80159603	80159603	C	T	SNP	CCDC57	ENST00000389641	human	ensembl	74_37	-1	known	missense	c.218	p.R73H	0.997	NULL	NULL	-	no_errors	CCDC57	HGNC	ENSG00000176155				71	0	0	57	21	26.9231
C17orf62	0	genome.wustl.edu	37	17	80402405	80402405	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	80402405	80402405	C	T	SNP	C17orf62	ENST00000306645	human	ensembl	74_37	-1	known	missense	c.361	p.G121R	1.000	NULL	NULL	-	no_errors	C17orf62	HGNC	ENSG00000178927				87	0	0	77	6	7.22892
TBCD	0	genome.wustl.edu	37	17	80861301	80861301	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	80861301	80861301	C	T	SNP	TBCD	ENST00000355528	human	ensembl	74_37	+1	known	missense	c.1751	p.A584V	0.030	superfamily_ARM-type_fold	pfam_Tubulin_specific_chaperoneD_C,superfamily_ARM-type_fold	-	no_errors	TBCD	HGNC	ENSG00000141556				12	0	0	21	4	16
PFAS	0	genome.wustl.edu	37	17	8167098	8167098	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	8167098	8167098	G	A	SNP	PFAS	ENST00000314666	human	ensembl	74_37	+1	known	silent	c.1635	p.G545	0.957	pfam_AIR_synth_C_dom,superfamily_AIR_synth_C_dom,tigrfam_PRibForGlyAmidine_synth	pfam_AIR_synth_C_dom,pfam_AIR_synth_N_dom,superfamily_PurM_N-like,superfamily_AIR_synth_C_dom,tigrfam_PRibForGlyAmidine_synth	-	no_errors	PFAS	HGNC	ENSG00000178921				62	0	0	65	7	9.72222
PFAS	0	genome.wustl.edu	37	17	8168393	8168393	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	8168393	8168393	G	A	SNP	PFAS	ENST00000314666	human	ensembl	74_37	+1	known	missense	c.2230	p.V744M	1.000	superfamily_PurM_N-like,tigrfam_PRibForGlyAmidine_synth	pfam_AIR_synth_C_dom,pfam_AIR_synth_N_dom,superfamily_PurM_N-like,superfamily_AIR_synth_C_dom,tigrfam_PRibForGlyAmidine_synth	-	no_errors	PFAS	HGNC	ENSG00000178921				40	0	0	27	3	10
ARHGEF15	0	genome.wustl.edu	37	17	8215626	8215626	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	8215626	8215626	C	T	SNP	ARHGEF15	ENST00000361926	human	ensembl	74_37	+1	known	missense	c.269	p.S90F	0.696	NULL	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	-	no_errors	ARHGEF15	HGNC	ENSG00000198844				118	0	0	128	14	9.85915
MYH10	0	genome.wustl.edu	37	17	8422252	8422252	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	8422252	8422252	G	A	SNP	MYH10	ENST00000396239	human	ensembl	74_37	-1	known	missense	c.2260	p.P754S	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_HR1_rho-bd,superfamily_UBA-like,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH10	HGNC	ENSG00000133026				84	0	0	51	6	10.5263
TIMM22	0	genome.wustl.edu	37	17	902817	902817	+	Silent	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	902817	902817	T	G	SNP	TIMM22	ENST00000327158	human	ensembl	74_37	+1	known	silent	c.501	p.G167	1.000	pfam_Tim17/Tim22/Tim23/PMP24	pfam_Tim17/Tim22/Tim23/PMP24	-	no_errors	TIMM22	HGNC	ENSG00000177370				141	0	0	106	10	8.62069
USP43	0	genome.wustl.edu	37	17	9586272	9586272	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	9586272	9586272	G	A	SNP	USP43	ENST00000285199	human	ensembl	74_37	+1	known	missense	c.1238	p.S413N	0.996	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP43	HGNC	ENSG00000154914				108	1	0.917431	89	7	7.29167
PIEZO2	0	genome.wustl.edu	37	18	10671647	10671647	+	Silent	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	10671647	10671647	T	G	SNP	PIEZO2	ENST00000538948	human	ensembl	74_37	-1	known	silent	c.2007	p.T669	0.955	pfam_Piezo	pfam_Piezo	-	no_errors	PIEZO2	HGNC	ENSG00000154864				84	0	0	55	7	11.2903
PIEZO2	0	genome.wustl.edu	37	18	10696277	10696277	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	10696277	10696277	C	T	SNP	PIEZO2	ENST00000538948	human	ensembl	74_37	-1	known	missense	c.517	p.A173T	0.994	NULL	pfam_Piezo	-	no_errors	PIEZO2	HGNC	ENSG00000154864				45	0	0	47	13	21.6667
CIDEA	0	genome.wustl.edu	37	18	12274124	12274124	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	12274124	12274124	G	A	SNP	CIDEA	ENST00000320477	human	ensembl	74_37	+1	known	silent	c.363	p.P121	0.301	NULL	pfam_CIDE-N_dom,smart_CIDE-N_dom,pfscan_CIDE-N_dom	-	no_errors	CIDEA	HGNC	ENSG00000176194				61	0	0	58	17	22.6667
AFG3L2	0	genome.wustl.edu	37	18	12367305	12367305	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	12367305	12367305	A	G	SNP	AFG3L2	ENST00000269143	human	ensembl	74_37	-1	known	silent	c.369	p.D123	0.592	NULL	pfam_Peptidase_M41,pfam_ATPase_AAA_core,pfam_Pept_M41_FtsH_extracell,superfamily_P-loop_NTPase,smart_AAA+_ATPase,tigrfam_FtsH	-	no_errors	AFG3L2	HGNC	ENSG00000141385				221	0	0	154	11	6.66667
CEP76	0	genome.wustl.edu	37	18	12678171	12678171	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	12678171	12678171	G	A	SNP	CEP76	ENST00000262127	human	ensembl	74_37	-1	known	silent	c.1560	p.D520	0.999	NULL	superfamily_C2_dom	-	no_errors	CEP76	HGNC	ENSG00000101624				126	0	0	92	9	8.91089
CEP76	0	genome.wustl.edu	37	18	12699092	12699092	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	12699092	12699092	A	T	SNP	CEP76	ENST00000262127	human	ensembl	74_37	-1	known	missense	c.406	p.F136I	1.000	superfamily_C2_dom	superfamily_C2_dom	-	no_errors	CEP76	HGNC	ENSG00000101624				106	0	0	84	10	10.6383
PSMG2	0	genome.wustl.edu	37	18	12724555	12724555	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	12724555	12724555	C	T	SNP	PSMG2	ENST00000317615	human	ensembl	74_37	+1	known	silent	c.639	p.N213	1.000	pfam_Proteasome_assmbl_chaperone_2,pirsf_Proteasome_assmbl_chp_2_euk	pfam_Proteasome_assmbl_chaperone_2,pirsf_Proteasome_assmbl_chp_2_euk	-	no_errors	PSMG2	HGNC	ENSG00000128789				67	0	0	45	6	11.7647
CEP192	0	genome.wustl.edu	37	18	13087145	13087145	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	13087145	13087145	C	T	SNP	CEP192	ENST00000506447	human	ensembl	74_37	+1	known	missense	c.5746	p.R1916C	1.000	NULL	NULL	-	no_errors	CEP192	HGNC	ENSG00000101639				127	0	0	74	24	24.4898
LDLRAD4	0	genome.wustl.edu	37	18	13438344	13438344	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	13438344	13438344	C	G	SNP	LDLRAD4	ENST00000359446	human	ensembl	74_37	+1	known	missense	c.142	p.L48V	1.000	superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	-	no_errors	LDLRAD4	HGNC	ENSG00000168675				107	0	0	61	19	23.75
LDLRAD4	0	genome.wustl.edu	37	18	13645246	13645246	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	13645246	13645246	A	G	SNP	LDLRAD4	ENST00000359446	human	ensembl	74_37	+1	known	missense	c.511	p.T171A	1.000	NULL	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	-	no_errors	LDLRAD4	HGNC	ENSG00000168675				82	0	0	76	6	7.31707
FAM210A	0	genome.wustl.edu	37	18	13681828	13681828	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	13681828	13681828	A	T	SNP	FAM210A	ENST00000322247	human	ensembl	74_37	-1	known	missense	c.249	p.H83Q	0.000	NULL	pfam_DUF1279	-	no_errors	FAM210A	HGNC	ENSG00000177150				210	0	0	193	14	6.76329
RNMT	0	genome.wustl.edu	37	18	13734595	13734595	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	13734595	13734595	A	G	SNP	RNMT	ENST00000262173	human	ensembl	74_37	+1	known	missense	c.550	p.I184V	1.000	pfam_mRNA_G-N7_MeTrfase_dom,pirsf_mRNA_G-N7_MeTrfase	pfam_mRNA_G-N7_MeTrfase_dom,pfam_Methyltransf_11,pirsf_mRNA_G-N7_MeTrfase	-	no_errors	RNMT	HGNC	ENSG00000101654				133	0	0	78	6	7.14286
RNMT	0	genome.wustl.edu	37	18	13742637	13742637	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	13742637	13742637	T	C	SNP	RNMT	ENST00000262173	human	ensembl	74_37	+1	known	silent	c.1125	p.F375	1.000	pfam_mRNA_G-N7_MeTrfase_dom,pirsf_mRNA_G-N7_MeTrfase	pfam_mRNA_G-N7_MeTrfase_dom,pfam_Methyltransf_11,pirsf_mRNA_G-N7_MeTrfase	-	no_errors	RNMT	HGNC	ENSG00000101654				115	1	0.862069	73	8	9.87654
SNRPD1	0	genome.wustl.edu	37	18	19203854	19203854	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	19203854	19203854	A	G	SNP	SNRPD1	ENST00000579618	human	ensembl	74_37	+1	putative	missense	c.110	p.Y37C	0.993	NULL	pfam_Ribonucl_LSM,superfamily_LSM_dom	-	no_errors	SNRPD1	HGNC	ENSG00000167088				80	0	0	54	5	8.47458
GATA6	0	genome.wustl.edu	37	18	19762796	19762796	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	19762796	19762796	A	T	SNP	GATA6	ENST00000269216	human	ensembl	74_37	+1	known	missense	c.1507	p.T503S	0.834	NULL	pfam_GATA_N,pfam_Znf_GATA,smart_Znf_GATA,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA6	HGNC	ENSG00000141448				61	0	0	49	9	15.5172
CABLES1	0	genome.wustl.edu	37	18	20814617	20814617	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	20814617	20814617	T	C	SNP	CABLES1	ENST00000256925	human	ensembl	74_37	+1	known	silent	c.1134	p.S378	0.995	pirsf_Cdk5/c-Abl_linker_Cables	pfam_Cyclin_N,superfamily_Cyclin-like,pirsf_Cdk5/c-Abl_linker_Cables	-	no_errors	CABLES1	HGNC	ENSG00000134508				56	0	0	40	5	11.1111
C18orf8	0	genome.wustl.edu	37	18	21109232	21109232	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	21109232	21109232	C	T	SNP	C18orf8	ENST00000269221	human	ensembl	74_37	+1	known	silent	c.1386	p.T462	0.983	NULL	pfam_Mic1,superfamily_WD40_repeat_dom	-	no_errors	C18orf8	HGNC	ENSG00000141452				65	0	0	64	5	7.24638
LAMA3	0	genome.wustl.edu	37	18	21413846	21413846	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	21413846	21413846	G	A	SNP	LAMA3	ENST00000313654	human	ensembl	74_37	+1	known	missense	c.2878	p.V960I	0.002	NULL	pfam_EGF_laminin,pfam_Laminin_G,pfam_Laminin_I,pfam_Laminin_N,pfam_Laminin_II,pfam_Laminin_B_type_IV,superfamily_ConA-like_lec_gl_sf,superfamily_Growth_fac_rcpt_N_dom,superfamily_Galactose-bd-like,superfamily_STAT_TF_coiled-coil,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA3	HGNC	ENSG00000053747				216	0	0	171	60	25.974
LAMA3	0	genome.wustl.edu	37	18	21413908	21413908	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	21413908	21413908	G	A	SNP	LAMA3	ENST00000313654	human	ensembl	74_37	+1	known	silent	c.2940	p.G980	0.000	NULL	pfam_EGF_laminin,pfam_Laminin_G,pfam_Laminin_I,pfam_Laminin_N,pfam_Laminin_II,pfam_Laminin_B_type_IV,superfamily_ConA-like_lec_gl_sf,superfamily_Growth_fac_rcpt_N_dom,superfamily_Galactose-bd-like,superfamily_STAT_TF_coiled-coil,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA3	HGNC	ENSG00000053747				255	0	0	231	25	9.76562
THOC1	0	genome.wustl.edu	37	18	214854	214854	+	Silent	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	214854	214854	A	C	SNP	THOC1	ENST00000261600	human	ensembl	74_37	-1	known	silent	c.1746	p.G582	0.933	pfam_Death_domain,superfamily_DEATH-like_dom,smart_Death_domain,pfscan_Death_domain	pfam_THO_THOC1,pfam_Death_domain,superfamily_DEATH-like_dom,smart_Death_domain,pfscan_Death_domain	-	no_errors	THOC1	HGNC	ENSG00000079134				189	0	0	133	13	8.90411
LAMA3	0	genome.wustl.edu	37	18	21496586	21496586	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	21496586	21496586	C	T	SNP	LAMA3	ENST00000313654	human	ensembl	74_37	+1	known	missense	c.7850	p.A2617V	0.002	superfamily_ConA-like_lec_gl_sf,pfscan_Laminin_G	pfam_EGF_laminin,pfam_Laminin_G,pfam_Laminin_I,pfam_Laminin_N,pfam_Laminin_II,pfam_Laminin_B_type_IV,superfamily_ConA-like_lec_gl_sf,superfamily_Growth_fac_rcpt_N_dom,superfamily_Galactose-bd-like,superfamily_STAT_TF_coiled-coil,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA3	HGNC	ENSG00000053747				125	0	0	101	8	7.33945
LAMA3	0	genome.wustl.edu	37	18	21508129	21508129	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	21508129	21508129	T	A	SNP	LAMA3	ENST00000313654	human	ensembl	74_37	+1	known	missense	c.8220	p.N2740K	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_EGF_laminin,pfam_Laminin_G,pfam_Laminin_I,pfam_Laminin_N,pfam_Laminin_II,pfam_Laminin_B_type_IV,superfamily_ConA-like_lec_gl_sf,superfamily_Growth_fac_rcpt_N_dom,superfamily_Galactose-bd-like,superfamily_STAT_TF_coiled-coil,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA3	HGNC	ENSG00000053747				99	0	0	90	5	5.26316
CABYR	0	genome.wustl.edu	37	18	21739458	21739458	+	Silent	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	21739458	21739458	A	T	SNP	CABYR	ENST00000399496	human	ensembl	74_37	+1	known	silent	c.564	p.G188	1.000	NULL	pfam_cAMP_dep_PK_reg_su_I/II_a/b,superfamily_cAMP_dep_PK_reg_su_I/II_a/b,smart_cAMP_dep_PK_reg_su_I/II_a/b	-	no_errors	CABYR	HGNC	ENSG00000154040				84	0	0	67	5	6.94444
OSBPL1A	0	genome.wustl.edu	37	18	21819305	21819305	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	21819305	21819305	T	C	SNP	OSBPL1A	ENST00000319481	human	ensembl	74_37	-1	known	silent	c.1323	p.K441	1.000	NULL	pfam_Oxysterol-bd,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Pleckstrin_homology,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,prints_Ankyrin_rpt	-	no_errors	OSBPL1A	HGNC	ENSG00000141447				52	0	0	43	3	6.52174
HRH4	0	genome.wustl.edu	37	18	22057338	22057338	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	22057338	22057338	T	C	SNP	HRH4	ENST00000256906	human	ensembl	74_37	+1	known	missense	c.985	p.Y329H	0.016	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Histamine_H4_rcpt,prints_GPCR_Rhodpsn	-	no_errors	HRH4	HGNC	ENSG00000134489				295	0	0	251	23	8.39416
SS18	0	genome.wustl.edu	37	18	23632767	23632767	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	23632767	23632767	A	T	SNP	SS18	ENST00000415083	human	ensembl	74_37	-1	known	missense	c.428	p.L143H	0.991	NULL	pfam_SS18_fam	-	no_errors	SS18	HGNC	ENSG00000141380				177	0	0	152	14	8.43373
PSMA8	0	genome.wustl.edu	37	18	23713955	23713955	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	23713955	23713955	T	A	SNP	PSMA8	ENST00000308268	human	ensembl	74_37	+1	known	missense	c.26	p.I9N	1.000	pfam_Proteasome_asu_N,smart_Proteasome_asu_N	pfam_Proteasome_sua/b,pfam_Proteasome_asu_N,smart_Proteasome_asu_N	-	no_errors	PSMA8	HGNC	ENSG00000154611				86	0	0	81	5	5.81395
PSMA8	0	genome.wustl.edu	37	18	23738101	23738101	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	23738101	23738101	A	G	SNP	PSMA8	ENST00000308268	human	ensembl	74_37	+1	known	missense	c.388	p.N130D	1.000	pfam_Proteasome_sua/b	pfam_Proteasome_sua/b,pfam_Proteasome_asu_N,smart_Proteasome_asu_N	-	no_errors	PSMA8	HGNC	ENSG00000154611				176	0	0	116	15	11.4504
KCTD1	0	genome.wustl.edu	37	18	24035751	24035751	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	24035751	24035751	G	A	SNP	KCTD1	ENST00000417602	human	ensembl	74_37	-1	known	missense	c.2554	p.R852C	1.000	NULL	pfam_DUF3504,pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	-	no_errors	KCTD1	HGNC	ENSG00000134504				100	0	0	75	23	23.4694
DSC2	0	genome.wustl.edu	37	18	28659862	28659862	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	28659862	28659862	C	A	SNP	DSC2	ENST00000280904	human	ensembl	74_37	-1	known	missense	c.1614	p.E538D	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Cadherin/Desmocollin,prints_Desmosomal_cadherin	-	no_errors	DSC2	HGNC	ENSG00000134755				233	2	0.851064	158	17	9.71429
EMILIN2	0	genome.wustl.edu	37	18	2885039	2885039	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	2885039	2885039	G	T	SNP	EMILIN2	ENST00000254528	human	ensembl	74_37	+1	known	missense	c.335	p.G112V	1.000	pfam_EMI_domain,pfscan_EMI_domain	pfam_EMI_domain,pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,pfscan_EMI_domain	-	no_errors	EMILIN2	HGNC	ENSG00000132205				84	0	0	93	10	9.70874
DSG4	0	genome.wustl.edu	37	18	28986263	28986263	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	28986263	28986263	A	G	SNP	DSG4	ENST00000359747	human	ensembl	74_37	+1	known	silent	c.1860	p.Q620	0.000	NULL	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Desmoglein,prints_Desmosomal_cadherin	-	no_errors	DSG4	HGNC	ENSG00000175065				104	0	0	113	6	5.04202
TRAPPC8	0	genome.wustl.edu	37	18	29410886	29410886	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	29410886	29410886	A	G	SNP	TRAPPC8	ENST00000283351	human	ensembl	74_37	-1	known	silent	c.4140	p.L1380	1.000	NULL	NULL	-	no_errors	TRAPPC8	HGNC	ENSG00000153339				110	0	0	62	20	24.3902
TRAPPC8	0	genome.wustl.edu	37	18	29432581	29432581	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	29432581	29432581	G	A	SNP	TRAPPC8	ENST00000283351	human	ensembl	74_37	-1	known	missense	c.3479	p.A1160V	1.000	NULL	NULL	-	no_errors	TRAPPC8	HGNC	ENSG00000153339				320	1	0.311526	232	19	7.56972
RNF125	0	genome.wustl.edu	37	18	29617122	29617122	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	29617122	29617122	T	C	SNP	RNF125	ENST00000217740	human	ensembl	74_37	+1	known	missense	c.208	p.W70R	1.000	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF125	HGNC	ENSG00000101695				265	0	0	222	25	10.1215
RNF125	0	genome.wustl.edu	37	18	29645945	29645945	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	29645945	29645945	T	C	SNP	RNF125	ENST00000217740	human	ensembl	74_37	+1	known	silent	c.585	p.S195	0.848	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF125	HGNC	ENSG00000101695				153	0	0	86	9	9.47368
KLHL14	0	genome.wustl.edu	37	18	30350377	30350377	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	30350377	30350377	A	T	SNP	KLHL14	ENST00000359358	human	ensembl	74_37	-1	known	missense	c.178	p.S60T	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL14	HGNC	ENSG00000197705				36	0	0	30	6	16.6667
ASXL3	0	genome.wustl.edu	37	18	31319679	31319679	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	31319679	31319679	T	A	SNP	ASXL3	ENST00000269197	human	ensembl	74_37	+1	known	missense	c.2311	p.S771T	1.000	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	ASXL3	HGNC	ENSG00000141431				115	0	0	88	12	12
ASXL3	0	genome.wustl.edu	37	18	31323514	31323514	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	31323514	31323514	T	A	SNP	ASXL3	ENST00000269197	human	ensembl	74_37	+1	known	missense	c.3702	p.N1234K	0.993	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	ASXL3	HGNC	ENSG00000141431				96	0	0	60	6	9.09091
MYOM1	0	genome.wustl.edu	37	18	3142042	3142042	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	3142042	3142042	G	A	SNP	MYOM1	ENST00000356443	human	ensembl	74_37	-1	known	silent	c.1920	p.P640	0.590	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	MYOM1	HGNC	ENSG00000101605				100	0	0	93	10	9.70874
NOL4	0	genome.wustl.edu	37	18	31599387	31599387	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	31599387	31599387	C	T	SNP	NOL4	ENST00000261592	human	ensembl	74_37	-1	known	silent	c.951	p.S317	0.426	NULL	NULL	-	no_errors	NOL4	HGNC	ENSG00000101746				116	0	0	80	7	8.04598
ZSCAN30	0	genome.wustl.edu	37	18	32844000	32844000	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	32844000	32844000	G	A	SNP	ZSCAN30	ENST00000333206	human	ensembl	74_37	-1	known	missense	c.317	p.A106V	0.998	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,pfscan_Tscrpt_reg_SCAN	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN30	HGNC	ENSG00000186814				59	0	0	58	4	6.45161
ZNF396	0	genome.wustl.edu	37	18	32948335	32948335	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	32948335	32948335	A	T	SNP	ZNF396	ENST00000306346	human	ensembl	74_37	-1	known	missense	c.982	p.S328T	0.018	NULL	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF396	HGNC	ENSG00000186496				136	0	0	76	8	9.52381
RPRD1A	0	genome.wustl.edu	37	18	33607161	33607161	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	33607161	33607161	A	G	SNP	RPRD1A	ENST00000357384	human	ensembl	74_37	-1	known	missense	c.599	p.L200S	0.974	NULL	pfam_RNA_pol_II-bd,superfamily_ENTH_VHS,smart_CID_dom	-	no_errors	RPRD1A	HGNC	ENSG00000141425				158	0	0	116	11	8.66142
SLC39A6	0	genome.wustl.edu	37	18	33689669	33689669	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	33689669	33689669	A	G	SNP	SLC39A6	ENST00000269187	human	ensembl	74_37	-1	known	missense	c.2155	p.C719R	1.000	pfam_ZIP	pfam_ZIP	-	no_errors	SLC39A6	HGNC	ENSG00000141424				203	0	0	133	15	10.1351
SLC39A6	0	genome.wustl.edu	37	18	33702206	33702206	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	33702206	33702206	T	C	SNP	SLC39A6	ENST00000269187	human	ensembl	74_37	-1	known	missense	c.1168	p.S390G	1.000	pfam_ZIP	pfam_ZIP	-	no_errors	SLC39A6	HGNC	ENSG00000141424				202	0	0	150	14	8.53659
ELP2	0	genome.wustl.edu	37	18	33726313	33726313	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	33726313	33726313	T	C	SNP	ELP2	ENST00000358232	human	ensembl	74_37	+1	known	missense	c.1094	p.L365S	0.962	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	ELP2	HGNC	ENSG00000134759				136	0	0	107	7	6.14035
MOCOS	0	genome.wustl.edu	37	18	33779754	33779754	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	33779754	33779754	G	T	SNP	MOCOS	ENST00000261326	human	ensembl	74_37	+1	known	missense	c.408	p.Q136H	0.000	pfam_Aminotrans_V/Cys_dSase,superfamily_PyrdxlP-dep_Trfase	pfam_MOSC_N,pfam_MoCF_Sase_C,pfam_Aminotrans_V/Cys_dSase,superfamily_PyrdxlP-dep_Trfase,superfamily_Pyrv_Knase-like_insert_dom	-	no_errors	MOCOS	HGNC	ENSG00000075643				58	0	0	56	3	5.08475
MOCOS	0	genome.wustl.edu	37	18	33795548	33795548	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	33795548	33795548	T	G	SNP	MOCOS	ENST00000261326	human	ensembl	74_37	+1	known	missense	c.1405	p.F469V	0.997	pfam_Aminotrans_V/Cys_dSase,superfamily_PyrdxlP-dep_Trfase	pfam_MOSC_N,pfam_MoCF_Sase_C,pfam_Aminotrans_V/Cys_dSase,superfamily_PyrdxlP-dep_Trfase,superfamily_Pyrv_Knase-like_insert_dom	-	no_errors	MOCOS	HGNC	ENSG00000075643				59	0	0	52	3	5.45455
MOCOS	0	genome.wustl.edu	37	18	33795876	33795876	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	33795876	33795876	C	G	SNP	MOCOS	ENST00000261326	human	ensembl	74_37	+1	known	missense	c.1733	p.A578G	0.000	NULL	pfam_MOSC_N,pfam_MoCF_Sase_C,pfam_Aminotrans_V/Cys_dSase,superfamily_PyrdxlP-dep_Trfase,superfamily_Pyrv_Knase-like_insert_dom	-	no_errors	MOCOS	HGNC	ENSG00000075643				50	0	0	64	7	9.85915
FHOD3	0	genome.wustl.edu	37	18	34205603	34205603	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	34205603	34205603	C	T	SNP	FHOD3	ENST00000257209	human	ensembl	74_37	+1	known	missense	c.1087	p.R363C	1.000	superfamily_ARM-type_fold	pfam_FH2_Formin,superfamily_ARM-type_fold,smart_FH2_Formin	-	no_errors	FHOD3	HGNC	ENSG00000134775				59	0	0	51	25	32.8947
TPGS2	0	genome.wustl.edu	37	18	34398915	34398915	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	34398915	34398915	T	C	SNP	TPGS2	ENST00000334295	human	ensembl	74_37	-1	known	missense	c.107	p.E36G	0.957	NULL	smart_SMI1/KNR4_like_dom	-	no_errors	TPGS2	HGNC	ENSG00000134779				153	0	0	102	8	7.27273
DLGAP1	0	genome.wustl.edu	37	18	3879483	3879483	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	3879483	3879483	T	C	SNP	DLGAP1	ENST00000315677	human	ensembl	74_37	-1	known	missense	c.586	p.S196G	0.747	NULL	pfam_GKAP	-	no_errors	DLGAP1	HGNC	ENSG00000170579				134	0	0	128	9	6.56934
SETBP1	0	genome.wustl.edu	37	18	42530292	42530292	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	42530292	42530292	T	C	SNP	SETBP1	ENST00000282030	human	ensembl	74_37	+1	known	silent	c.987	p.P329	0.002	NULL	smart_AT_hook_DNA-bd_motif	-	no_errors	SETBP1	HGNC	ENSG00000152217				87	0	0	78	7	8.23529
SETBP1	0	genome.wustl.edu	37	18	42533228	42533228	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	42533228	42533228	C	T	SNP	SETBP1	ENST00000282030	human	ensembl	74_37	+1	known	missense	c.3923	p.T1308M	0.996	NULL	smart_AT_hook_DNA-bd_motif	-	no_errors	SETBP1	HGNC	ENSG00000152217				82	0	0	52	16	23.5294
SLC14A2	0	genome.wustl.edu	37	18	43219786	43219786	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	43219786	43219786	G	A	SNP	SLC14A2	ENST00000255226	human	ensembl	74_37	+1	known	missense	c.919	p.V307M	1.000	pfam_Urea_transporter	pfam_Urea_transporter	-	no_errors	SLC14A2	HGNC	ENSG00000132874				74	0	0	86	9	9.47368
EPG5	0	genome.wustl.edu	37	18	43510722	43510722	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	43510722	43510722	T	C	SNP	EPG5	ENST00000282041	human	ensembl	74_37	-1	known	missense	c.2332	p.T778A	0.941	NULL	NULL	-	no_errors	EPG5	HGNC	ENSG00000152223				73	0	0	51	7	12.069
EPG5	0	genome.wustl.edu	37	18	43532382	43532382	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	43532382	43532382	A	G	SNP	EPG5	ENST00000282041	human	ensembl	74_37	-1	known	silent	c.1236	p.I412	0.892	NULL	NULL	-	no_errors	EPG5	HGNC	ENSG00000152223				91	0	0	64	8	11.1111
PSTPIP2	0	genome.wustl.edu	37	18	43577772	43577772	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	43577772	43577772	G	A	SNP	PSTPIP2	ENST00000409746	human	ensembl	74_37	-1	known	silent	c.585	p.I195	0.715	NULL	pfam_FCH_dom,smart_FCH_dom,pfscan_FCH_dom	-	no_errors	PSTPIP2	HGNC	ENSG00000152229				170	0	0	109	35	24.3056
PSTPIP2	0	genome.wustl.edu	37	18	43578806	43578806	+	Splice_Site	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	43578806	43578806	C	T	SNP	PSTPIP2	ENST00000409746	human	ensembl	74_37	-1	known	splice_site	c.517-1	e8-1	1.000	-	-	-	no_errors	PSTPIP2	HGNC	ENSG00000152229				82	0	0	81	6	6.89655
ATP5A1	0	genome.wustl.edu	37	18	43664567	43664567	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	43664567	43664567	A	G	SNP	ATP5A1	ENST00000282050	human	ensembl	74_37	-1	known	missense	c.1483	p.Y495H	0.989	pfam_ATPase_F1/V1/A1-cplx_a/bsu_C,superfamily_ATPase_F1/V1/A1-cplx_a/bsu_C,tigrfam_ATPase_F1-cplx_asu	pfam_ATPase_F1/V1/A1_a/bsu_nucl-bd,pfam_ATPase_F1/V1/A1-cplx_a/bsu_C,pfam_ATPase_F1_a/bsu_N,superfamily_P-loop_NTPase,superfamily_ATPase_F1/V1/A1-cplx_a/bsu_C,superfamily_ATPase_F1_a/bsu_N,tigrfam_ATPase_F1-cplx_asu	-	no_errors	ATP5A1	HGNC	ENSG00000152234				58	0	0	39	6	13.3333
HAUS1	0	genome.wustl.edu	37	18	43705714	43705714	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	43705714	43705714	C	T	SNP	HAUS1	ENST00000282058	human	ensembl	74_37	+1	known	missense	c.743	p.P248L	1.000	NULL	NULL	-	no_errors	HAUS1	HGNC	ENSG00000152240				39	0	0	25	5	16.6667
PIAS2	0	genome.wustl.edu	37	18	44392485	44392485	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	44392485	44392485	T	C	SNP	PIAS2	ENST00000585916	human	ensembl	74_37	-1	known	missense	c.1777	p.T593A	1.000	NULL	pfam_Znf_MIZ,smart_SAP_dom,pfscan_Znf_MIZ,pfscan_SAP_dom	-	no_errors	PIAS2	HGNC	ENSG00000078043				64	0	0	56	3	5.08475
PIAS2	0	genome.wustl.edu	37	18	44470945	44470945	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	44470945	44470945	G	A	SNP	PIAS2	ENST00000585916	human	ensembl	74_37	-1	known	missense	c.97	p.R33C	1.000	smart_SAP_dom,pfscan_SAP_dom	pfam_Znf_MIZ,smart_SAP_dom,pfscan_Znf_MIZ,pfscan_SAP_dom	-	no_errors	PIAS2	HGNC	ENSG00000078043				117	0	0	76	22	22.449
TCEB3B	0	genome.wustl.edu	37	18	44559507	44559507	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	44559507	44559507	G	A	SNP	TCEB3B	ENST00000332567	human	ensembl	74_37	-1	known	missense	c.2129	p.A710V	0.012	NULL	pfam_RNA_pol_II_trans_fac_SIII_A,pfam_TFIIS_N,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub	-	no_errors	TCEB3B	HGNC	ENSG00000206181				66	0	0	63	21	25
TCEB3B	0	genome.wustl.edu	37	18	44560674	44560674	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	44560674	44560674	T	C	SNP	TCEB3B	ENST00000332567	human	ensembl	74_37	-1	known	missense	c.962	p.D321G	0.000	NULL	pfam_RNA_pol_II_trans_fac_SIII_A,pfam_TFIIS_N,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub	-	no_errors	TCEB3B	HGNC	ENSG00000206181				135	1	0.735294	131	15	10.274
TCEB3B	0	genome.wustl.edu	37	18	44560714	44560714	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	44560714	44560714	G	A	SNP	TCEB3B	ENST00000332567	human	ensembl	74_37	-1	known	missense	c.922	p.P308S	0.000	NULL	pfam_RNA_pol_II_trans_fac_SIII_A,pfam_TFIIS_N,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub	-	no_errors	TCEB3B	HGNC	ENSG00000206181				172	0	0	167	18	9.72973
TCEB3B	0	genome.wustl.edu	37	18	44561192	44561192	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	44561192	44561192	A	G	SNP	TCEB3B	ENST00000332567	human	ensembl	74_37	-1	known	silent	c.444	p.S148	0.000	NULL	pfam_RNA_pol_II_trans_fac_SIII_A,pfam_TFIIS_N,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub	-	no_errors	TCEB3B	HGNC	ENSG00000206181				107	0	0	103	13	11.2069
TCEB3B	0	genome.wustl.edu	37	18	44561608	44561608	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	44561608	44561608	C	T	SNP	TCEB3B	ENST00000332567	human	ensembl	74_37	-1	known	missense	c.28	p.A10T	0.000	superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub	pfam_RNA_pol_II_trans_fac_SIII_A,pfam_TFIIS_N,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub	-	no_errors	TCEB3B	HGNC	ENSG00000206181				72	0	0	57	13	18.5714
SMAD2	0	genome.wustl.edu	37	18	45374882	45374882	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	45374882	45374882	G	A	SNP	SMAD2	ENST00000262160	human	ensembl	74_37	-1	known	nonsense	c.961	p.R321*	1.000	pfam_SMAD_dom_Dwarfin-type,superfamily_SMAD_FHA_domain,smart_SMAD_dom_Dwarfin-type,pfscan_SMAD_dom_Dwarfin-type	pfam_SMAD_dom_Dwarfin-type,pfam_MAD_homology1_Dwarfin-type,pfam_Interferon_reg_factor-3,superfamily_SMAD_FHA_domain,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,smart_SMAD_dom_Dwarfin-type,pfscan_MAD_homology_MH1,pfscan_SMAD_dom_Dwarfin-type	-	no_errors	SMAD2	HGNC	ENSG00000175387				114	0	0	91	6	6.18557
ZBTB7C	0	genome.wustl.edu	37	18	45567392	45567392	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	45567392	45567392	G	A	SNP	ZBTB7C	ENST00000332053	human	ensembl	74_37	-1	known	silent	c.87	p.H29	0.692	pfam_BTB_POZ,superfamily_BTB/POZ_fold	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB7C	HGNC	ENSG00000184828				55	0	0	48	13	21.3115
DYM	0	genome.wustl.edu	37	18	46645179	46645179	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	46645179	46645179	G	A	SNP	DYM	ENST00000269445	human	ensembl	74_37	-1	known	missense	c.1681	p.R561C	1.000	pfam_Dymeclin,superfamily_ARM-type_fold	pfam_Dymeclin,superfamily_ARM-type_fold	-	no_errors	DYM	HGNC	ENSG00000141627				85	0	0	55	8	12.6984
ACAA2	0	genome.wustl.edu	37	18	47320717	47320717	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	47320717	47320717	T	C	SNP	ACAA2	ENST00000285093	human	ensembl	74_37	-1	known	silent	c.510	p.V170	0.003	pfam_Thiolase_N,superfamily_Thiolase-like,pirsf_Thiolase,tigrfam_Thiolase	pfam_Thiolase_N,pfam_Thiolase_C,superfamily_Thiolase-like,pirsf_Thiolase,tigrfam_Thiolase	-	no_errors	ACAA2	HGNC	ENSG00000167315				71	0	0	56	5	8.19672
MYO5B	0	genome.wustl.edu	37	18	47406824	47406824	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	47406824	47406824	C	T	SNP	MYO5B	ENST00000285039	human	ensembl	74_37	-1	known	missense	c.3047	p.R1016Q	1.000	NULL	pfam_Myosin_head_motor_dom,pfam_Dil_domain,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_Dilute,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO5B	HGNC	ENSG00000167306				320	2	0.621118	235	20	7.84314
SKA1	0	genome.wustl.edu	37	18	47917530	47917530	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	47917530	47917530	T	C	SNP	SKA1	ENST00000285116	human	ensembl	74_37	+1	known	silent	c.486	p.N162	1.000	pfam_DUF1395	pfam_DUF1395	-	no_errors	SKA1	HGNC	ENSG00000154839				66	0	0	38	9	19.1489
COLEC12	0	genome.wustl.edu	37	18	480755	480755	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	480755	480755	C	T	SNP	COLEC12	ENST00000400256	human	ensembl	74_37	-1	known	missense	c.10	p.D4N	1.000	NULL	pfam_C-type_lectin,pfam_Collagen,superfamily_C-type_lectin_fold,smart_C-type_lectin,prints_AntifreezeII,pfscan_C-type_lectin	-	no_errors	COLEC12	HGNC	ENSG00000158270				93	0	0	84	8	8.69565
MAPK4	0	genome.wustl.edu	37	18	48255702	48255702	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	48255702	48255702	G	A	SNP	MAPK4	ENST00000400384	human	ensembl	74_37	+1	known	silent	c.1242	p.S414	0.993	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_MAPK_ERK3/4	-	no_errors	MAPK4	HGNC	ENSG00000141639				11	0	0	9	7	43.75
SMAD4	0	genome.wustl.edu	37	18	48603091	48603091	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	48603091	48603091	C	T	SNP	SMAD4	ENST00000342988	human	ensembl	74_37	+1	known	silent	c.1392	p.A464	0.961	pfam_SMAD_dom_Dwarfin-type,superfamily_SMAD_FHA_domain,smart_SMAD_dom_Dwarfin-type,pfscan_SMAD_dom_Dwarfin-type	pfam_SMAD_dom_Dwarfin-type,pfam_MAD_homology1_Dwarfin-type,superfamily_SMAD_FHA_domain,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,smart_SMAD_dom_Dwarfin-type,pfscan_MAD_homology_MH1,pfscan_SMAD_dom_Dwarfin-type	-	no_errors	SMAD4	HGNC	ENSG00000141646				49	0	0	32	9	21.9512
SMAD4	0	genome.wustl.edu	37	18	48604854	48604854	+	RNA	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	48604854	48604854	G	A	SNP	SMAD4	ENST00000586253	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	SMAD4	HGNC	ENSG00000141646				83	0	0	71	8	10.1266
MBD2	0	genome.wustl.edu	37	18	51731394	51731394	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	51731394	51731394	G	A	SNP	MBD2	ENST00000256429	human	ensembl	74_37	-1	known	nonsense	c.676	p.R226*	0.947	superfamily_DNA-bd_dom	pfam_Methyl_CpG_DNA-bd,superfamily_DNA-bd_dom,smart_Methyl_CpG_DNA-bd,pfscan_Methyl_CpG_DNA-bd	-	no_errors	MBD2	HGNC	ENSG00000134046				199	1	0.5	133	11	7.63889
POLI	0	genome.wustl.edu	37	18	51820609	51820609	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	51820609	51820609	G	A	SNP	POLI	ENST00000579534	human	ensembl	74_37	+1	known	silent	c.1995	p.E665	0.949	NULL	pfam_DNA_repair_prot_UmuC-like,pfam_DNA_pol_Y-fam_little_finger,superfamily_DNA_pol_Y-fam_little_finger,pfscan_DNA_repair_prot_UmuC-like_N	-	no_errors	POLI	HGNC	ENSG00000101751				91	0	0	64	8	11.1111
C18orf54	0	genome.wustl.edu	37	18	51887090	51887090	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	51887090	51887090	C	T	SNP	C18orf54	ENST00000300091	human	ensembl	74_37	+1	known	nonsense	c.148	p.Q50*	0.999	NULL	NULL	-	no_errors	C18orf54	HGNC	ENSG00000166845				121	0	0	94	7	6.93069
ZBTB14	0	genome.wustl.edu	37	18	5291330	5291330	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	5291330	5291330	T	C	SNP	ZBTB14	ENST00000357006	human	ensembl	74_37	-1	known	missense	c.877	p.R293G	0.996	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB14	HGNC	ENSG00000198081				72	0	0	42	7	14.2857
TCF4	0	genome.wustl.edu	37	18	52924545	52924545	+	Splice_Site	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	52924545	52924545	C	T	SNP	TCF4	ENST00000398339	human	ensembl	74_37	-1	known	splice_site	c.1452+1	e15+1	1.000	-	-	-	no_errors	TCF4	HGNC	ENSG00000196628				79	0	0	63	14	18.1818
EPB41L3	0	genome.wustl.edu	37	18	5395110	5395110	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	5395110	5395110	T	C	SNP	EPB41L3	ENST00000341928	human	ensembl	74_37	-1	known	missense	c.3109	p.K1037E	1.000	pirsf_Band_41_protein,pfam_Band_4.1_C	pirsf_Band_41_protein,pfam_Band_4.1_C,pfam_SAB_dom,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	EPB41L3	HGNC	ENSG00000082397				121	0	0	93	6	6.06061
TXNL1	0	genome.wustl.edu	37	18	54281794	54281794	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	54281794	54281794	T	C	SNP	TXNL1	ENST00000217515	human	ensembl	74_37	-1	known	missense	c.596	p.N199S	1.000	pfam_PITH_dom,superfamily_Galactose-bd-like	pfam_PITH_dom,pfam_Thioredoxin_domain,superfamily_Galactose-bd-like,superfamily_Thioredoxin-like_fold	-	no_errors	TXNL1	HGNC	ENSG00000091164				47	0	0	33	4	10.8108
WDR7	0	genome.wustl.edu	37	18	54353252	54353252	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	54353252	54353252	A	G	SNP	WDR7	ENST00000254442	human	ensembl	74_37	+1	known	missense	c.586	p.S196G	0.999	superfamily_Quinonprotein_ADH-like_supfam	pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like_supfam,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR7	HGNC	ENSG00000091157				144	0	0	105	10	8.69565
NARS	0	genome.wustl.edu	37	18	55287875	55287875	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	55287875	55287875	A	G	SNP	NARS	ENST00000256854	human	ensembl	74_37	-1	known	missense	c.19	p.Y7H	0.999	NULL	pfam_aa-tRNA-synt_II,pfam_NA-bd_OB_tRNA,superfamily_NA-bd_OB-fold,pfscan_aa-tRNA-synth_II,prints_Asp/Asn-tRNA-synth_IIb,tigrfam_Asn-tRNA-ligase	-	no_errors	NARS	HGNC	ENSG00000134440				133	0	0	105	11	9.48276
NEDD4L	0	genome.wustl.edu	37	18	55919283	55919283	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	55919283	55919283	A	G	SNP	NEDD4L	ENST00000400345	human	ensembl	74_37	+1	known	silent	c.294	p.R98	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_HECT,pfam_WW_dom,pfam_C2_dom,superfamily_HECT,superfamily_C2_dom,superfamily_WW_dom,smart_C2_dom,smart_WW_dom,smart_HECT,pfscan_HECT,pfscan_C2_dom,pfscan_WW_dom,prints_C2_dom	-	no_errors	NEDD4L	HGNC	ENSG00000049759				108	0	0	71	7	8.97436
ALPK2	0	genome.wustl.edu	37	18	56202770	56202770	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	56202770	56202770	T	C	SNP	ALPK2	ENST00000361673	human	ensembl	74_37	-1	known	missense	c.4649	p.H1550R	0.000	NULL	pfam_MHCK_EF2_kinase,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase,pfscan_Ig-like_dom	-	no_errors	ALPK2	HGNC	ENSG00000198796				99	0	0	90	8	8.16327
ZNF532	0	genome.wustl.edu	37	18	56587141	56587141	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	56587141	56587141	G	A	SNP	ZNF532	ENST00000336078	human	ensembl	74_37	+1	known	missense	c.1622	p.R541H	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF532	HGNC	ENSG00000074657				48	0	0	52	4	7.14286
ZNF532	0	genome.wustl.edu	37	18	56606804	56606804	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	56606804	56606804	C	T	SNP	ZNF532	ENST00000336078	human	ensembl	74_37	+1	known	missense	c.2656	p.H886Y	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF532	HGNC	ENSG00000074657				126	0	0	96	14	12.7273
ZNF532	0	genome.wustl.edu	37	18	56620892	56620892	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	56620892	56620892	A	G	SNP	ZNF532	ENST00000336078	human	ensembl	74_37	+1	known	missense	c.3011	p.E1004G	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF532	HGNC	ENSG00000074657				100	0	0	73	10	12.0482
GRP	0	genome.wustl.edu	37	18	56892961	56892961	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	56892961	56892961	G	A	SNP	GRP	ENST00000256857	human	ensembl	74_37	+1	known	missense	c.377	p.G126D	0.000	NULL	pfam_Bombesin	-	no_errors	GRP	HGNC	ENSG00000134443				134	0	0	115	7	5.7377
LMAN1	0	genome.wustl.edu	37	18	57006142	57006142	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	57006142	57006142	T	C	SNP	LMAN1	ENST00000251047	human	ensembl	74_37	-1	known	silent	c.999	p.Q333	0.924	superfamily_HMG_box_dom	pfam_Lectin_leg,superfamily_ConA-like_lec_gl_sf,superfamily_HMG_box_dom	-	no_errors	LMAN1	HGNC	ENSG00000074695				110	0	0	98	8	7.54717
MC4R	0	genome.wustl.edu	37	18	58038610	58038610	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	58038610	58038610	G	T	SNP	MC4R	ENST00000299766	human	ensembl	74_37	-1	known	missense	c.973	p.L325I	0.194	prints_Mcort_rcpt_4	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Melcrt_ACTH_rcpt,prints_Mcort_rcpt_4,prints_GPCR_Rhodpsn,prints_Melancort_rcpt,prints_Cnbnoid_rcpt	-	no_errors	MC4R	HGNC	ENSG00000166603				144	0	0	116	9	7.2
CETN1	0	genome.wustl.edu	37	18	580531	580531	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	580531	580531	C	T	SNP	CETN1	ENST00000327228	human	ensembl	74_37	+1	known	silent	c.123	p.D41	0.996	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	CETN1	HGNC	ENSG00000177143				39	0	0	28	4	12.5
CDH20	0	genome.wustl.edu	37	18	59157790	59157790	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	59157790	59157790	T	C	SNP	CDH20	ENST00000262717	human	ensembl	74_37	+1	known	missense	c.4	p.W2R	1.000	NULL	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH20	HGNC	ENSG00000101542				163	0	0	112	11	8.94309
CDH20	0	genome.wustl.edu	37	18	59195450	59195450	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	59195450	59195450	T	A	SNP	CDH20	ENST00000262717	human	ensembl	74_37	+1	known	missense	c.1268	p.I423N	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH20	HGNC	ENSG00000101542				236	0	0	166	38	18.6275
RNF152	0	genome.wustl.edu	37	18	59483549	59483549	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	59483549	59483549	G	A	SNP	RNF152	ENST00000312828	human	ensembl	74_37	-1	known	missense	c.148	p.R50W	0.975	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF152	HGNC	ENSG00000176641				51	0	0	44	8	15.3846
L3MBTL4	0	genome.wustl.edu	37	18	5969507	5969507	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	5969507	5969507	G	A	SNP	L3MBTL4	ENST00000284898	human	ensembl	74_37	-1	known	missense	c.1526	p.T509M	0.026	NULL	pfam_Mbt,pfam_SAM_type1,pfam_Znf_C2HC,pfam_SAM_2,superfamily_SAM/pointed,smart_Mbt,smart_SAM,pfscan_Mbt,pfscan_SAM	-	no_errors	L3MBTL4	HGNC	ENSG00000154655				59	0	0	64	5	7.24638
ZCCHC2	0	genome.wustl.edu	37	18	60242648	60242648	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	60242648	60242648	C	T	SNP	ZCCHC2	ENST00000269499	human	ensembl	74_37	+1	known	missense	c.3334	p.P1112S	0.970	superfamily_Znf_CCHC	pfam_Znf_CCHC,superfamily_Phox,superfamily_Znf_CCHC,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC2	HGNC	ENSG00000141664				39	0	0	49	7	12.5
PHLPP1	0	genome.wustl.edu	37	18	60562361	60562361	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	60562361	60562361	A	G	SNP	PHLPP1	ENST00000262719	human	ensembl	74_37	+1	known	silent	c.2184	p.S728	0.003	NULL	pfam_PP2C-like_dom,pfam_Leu-rich_rpt,superfamily_PP2C-like_dom,smart_Leu-rich_rpt_typical-subtyp,smart_PP2C-like_dom,pfscan_Pleckstrin_homology	-	no_errors	PHLPP1	HGNC	ENSG00000081913				46	0	0	46	4	8
PHLPP1	0	genome.wustl.edu	37	18	60609078	60609078	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	60609078	60609078	C	T	SNP	PHLPP1	ENST00000262719	human	ensembl	74_37	+1	known	missense	c.3088	p.P1030S	1.000	NULL	pfam_PP2C-like_dom,pfam_Leu-rich_rpt,superfamily_PP2C-like_dom,smart_Leu-rich_rpt_typical-subtyp,smart_PP2C-like_dom,pfscan_Pleckstrin_homology	-	no_errors	PHLPP1	HGNC	ENSG00000081913				88	0	0	76	4	5
KDSR	0	genome.wustl.edu	37	18	61022445	61022445	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	61022445	61022445	T	A	SNP	KDSR	ENST00000406396	human	ensembl	74_37	-1	known	missense	c.409	p.T137S	0.062	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_DHB_DH	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH,prints_DHB_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	KDSR	HGNC	ENSG00000119537				116	0	0	83	10	10.7527
SERPINB13	0	genome.wustl.edu	37	18	61261619	61261619	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	61261619	61261619	C	T	SNP	SERPINB13	ENST00000344731	human	ensembl	74_37	+1	known	missense	c.503	p.S168F	0.008	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINB13	HGNC	ENSG00000197641				67	0	0	55	6	9.83607
SERPINB7	0	genome.wustl.edu	37	18	61449733	61449733	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	61449733	61449733	C	T	SNP	SERPINB7	ENST00000336429	human	ensembl	74_37	+1	known	missense	c.127	p.R43C	0.987	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINB7	HGNC	ENSG00000166396				122	0	0	87	14	13.8614
SERPINB2	0	genome.wustl.edu	37	18	61562597	61562597	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	61562597	61562597	T	C	SNP	SERPINB2	ENST00000299502	human	ensembl	74_37	+1	known	missense	c.268	p.Y90H	0.969	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINB2	HGNC	ENSG00000197632				193	0	0	158	14	8.13953
CDH7	0	genome.wustl.edu	37	18	63547677	63547677	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	63547677	63547677	A	G	SNP	CDH7	ENST00000323011	human	ensembl	74_37	+1	known	silent	c.1905	p.K635	1.000	pfam_Cadherin_cytoplasmic-dom	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH7	HGNC	ENSG00000081138				68	0	0	56	5	8.19672
CDH19	0	genome.wustl.edu	37	18	64212087	64212087	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	64212087	64212087	T	C	SNP	CDH19	ENST00000262150	human	ensembl	74_37	-1	known	missense	c.829	p.T277A	0.028	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH19	HGNC	ENSG00000071991				58	0	0	35	4	10.2564
DSEL	0	genome.wustl.edu	37	18	65180565	65180565	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	65180565	65180565	T	C	SNP	DSEL	ENST00000310045	human	ensembl	74_37	-1	known	silent	c.1311	p.T437	0.956	NULL	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,superfamily_Chondroitin_lyas	-	no_errors	DSEL	HGNC	ENSG00000171451				64	0	0	52	5	8.77193
TYMS	0	genome.wustl.edu	37	18	659673	659673	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	659673	659673	T	C	SNP	TYMS	ENST00000323274	human	ensembl	74_37	+1	known	missense	c.238	p.F80L	0.999	pfam_Thymidylate_synthase,superfamily_Thymidate_synth/dCMP_Mease,prints_Thymidylate_synthase	pfam_Thymidylate_synthase,superfamily_Thymidate_synth/dCMP_Mease,prints_Thymidylate_synthase,tigrfam_Thymidylate_synthase	-	no_errors	TYMS	HGNC	ENSG00000176890				200	0	0	133	12	8.27586
TMX3	0	genome.wustl.edu	37	18	66346763	66346763	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	66346763	66346763	T	C	SNP	TMX3	ENST00000299608	human	ensembl	74_37	-1	known	silent	c.1041	p.Q347	1.000	pfam_Calsequestrin	pfam_Thioredoxin_domain,pfam_Calsequestrin,superfamily_Thioredoxin-like_fold,prints_Thioredoxin	-	no_errors	TMX3	HGNC	ENSG00000166479				80	0	0	45	4	8.16327
RTTN	0	genome.wustl.edu	37	18	67688033	67688033	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	67688033	67688033	A	G	SNP	RTTN	ENST00000255674	human	ensembl	74_37	-1	known	missense	c.5971	p.S1991P	0.749	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	RTTN	HGNC	ENSG00000176225				129	0	0	119	8	6.29921
RTTN	0	genome.wustl.edu	37	18	67692051	67692051	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	67692051	67692051	A	C	SNP	RTTN	ENST00000255674	human	ensembl	74_37	-1	known	missense	c.5857	p.L1953V	0.001	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	RTTN	HGNC	ENSG00000176225				80	0	0	55	5	8.33333
RTTN	0	genome.wustl.edu	37	18	67695984	67695984	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	67695984	67695984	A	G	SNP	RTTN	ENST00000255674	human	ensembl	74_37	-1	known	silent	c.5799	p.C1933	0.995	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	RTTN	HGNC	ENSG00000176225				87	0	0	58	6	9.375
RTTN	0	genome.wustl.edu	37	18	67794748	67794748	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	67794748	67794748	C	T	SNP	RTTN	ENST00000255674	human	ensembl	74_37	-1	known	missense	c.3373	p.A1125T	0.002	NULL	superfamily_ARM-type_fold	-	no_errors	RTTN	HGNC	ENSG00000176225				56	0	0	52	10	16.129
RTTN	0	genome.wustl.edu	37	18	67802453	67802453	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	67802453	67802453	A	C	SNP	RTTN	ENST00000255674	human	ensembl	74_37	-1	known	missense	c.2852	p.L951R	0.990	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	RTTN	HGNC	ENSG00000176225				132	0	0	79	7	8.13953
RTTN	0	genome.wustl.edu	37	18	67813010	67813010	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	67813010	67813010	C	T	SNP	RTTN	ENST00000255674	human	ensembl	74_37	-1	known	silent	c.2319	p.S773	0.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	RTTN	HGNC	ENSG00000176225				146	0	0	120	9	6.97674
RTTN	0	genome.wustl.edu	37	18	67816137	67816137	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	67816137	67816137	G	A	SNP	RTTN	ENST00000255674	human	ensembl	74_37	-1	known	missense	c.2309	p.S770L	0.646	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	RTTN	HGNC	ENSG00000176225				107	0	0	82	22	21.1538
RTTN	0	genome.wustl.edu	37	18	67860532	67860532	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	67860532	67860532	C	T	SNP	RTTN	ENST00000255674	human	ensembl	74_37	-1	known	silent	c.999	p.A333	0.983	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	RTTN	HGNC	ENSG00000176225				60	0	0	38	14	26.9231
SOCS6	0	genome.wustl.edu	37	18	67993122	67993122	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	67993122	67993122	T	C	SNP	SOCS6	ENST00000397942	human	ensembl	74_37	+1	known	silent	c.1218	p.F406	0.991	pfam_SH2,smart_SH2,pfscan_SH2	pfam_SOCS_C,pfam_SH2,smart_SH2,smart_SOCS_C,pfscan_SOCS_C,pfscan_SH2	-	no_errors	SOCS6	HGNC	ENSG00000170677				97	0	0	89	8	8.24742
SOCS6	0	genome.wustl.edu	37	18	67993331	67993331	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	67993331	67993331	G	A	SNP	SOCS6	ENST00000397942	human	ensembl	74_37	+1	known	missense	c.1427	p.R476Q	1.000	pfscan_SH2	pfam_SOCS_C,pfam_SH2,smart_SH2,smart_SOCS_C,pfscan_SOCS_C,pfscan_SH2	-	no_errors	SOCS6	HGNC	ENSG00000170677				86	0	0	87	9	9.375
LAMA1	0	genome.wustl.edu	37	18	6943249	6943249	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	6943249	6943249	G	A	SNP	LAMA1	ENST00000389658	human	ensembl	74_37	-1	known	silent	c.8997	p.G2999	0.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_B_type_IV,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_II,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA1	HGNC	ENSG00000101680				127	1	0.78125	134	14	9.45946
LAMA1	0	genome.wustl.edu	37	18	6949194	6949194	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	6949194	6949194	A	G	SNP	LAMA1	ENST00000389658	human	ensembl	74_37	-1	known	missense	c.8462	p.V2821A	0.656	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_B_type_IV,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_II,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA1	HGNC	ENSG00000101680				53	0	0	38	4	9.52381
LAMA1	0	genome.wustl.edu	37	18	7049169	7049169	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	7049169	7049169	G	A	SNP	LAMA1	ENST00000389658	human	ensembl	74_37	-1	known	missense	c.676	p.L226F	1.000	pfam_Laminin_N,smart_Laminin_N,pfscan_Laminin_N	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_B_type_IV,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_II,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA1	HGNC	ENSG00000101680				147	0	0	118	9	7.08661
TIMM21	0	genome.wustl.edu	37	18	71822396	71822396	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	71822396	71822396	A	C	SNP	TIMM21	ENST00000169551	human	ensembl	74_37	+1	known	missense	c.318	p.R106S	1.000	pfam_Tim21	pfam_Tim21	-	no_errors	TIMM21	HGNC	ENSG00000075336				120	0	0	89	7	7.29167
CNDP2	0	genome.wustl.edu	37	18	72186224	72186224	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	72186224	72186224	T	C	SNP	CNDP2	ENST00000324262	human	ensembl	74_37	+1	known	silent	c.1251	p.S417	0.959	pfam_Peptidase_M20,pirsf_GSH_degradosome_DUG1	pfam_Peptidase_M20,pfam_Peptidase_M20_dimer,superfamily_Peptidase_M20_dimer,pirsf_GSH_degradosome_DUG1	-	no_errors	CNDP2	HGNC	ENSG00000133313				98	0	0	91	14	13.3333
ZNF407	0	genome.wustl.edu	37	18	72353051	72353051	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	72353051	72353051	T	C	SNP	ZNF407	ENST00000299687	human	ensembl	74_37	+1	known	missense	c.4775	p.M1592T	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,smart_Znf_U1,pfscan_Znf_C2H2	-	no_errors	ZNF407	HGNC	ENSG00000215421				191	0	0	148	14	8.64198
ZNF407	0	genome.wustl.edu	37	18	72632493	72632493	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	72632493	72632493	G	A	SNP	ZNF407	ENST00000299687	human	ensembl	74_37	+1	known	missense	c.5273	p.R1758H	1.000	smart_Znf_C2H2-like	pfam_Znf_C2H2,smart_Znf_C2H2-like,smart_Znf_U1,pfscan_Znf_C2H2	-	no_errors	ZNF407	HGNC	ENSG00000215421				61	0	0	48	12	20
TSHZ1	0	genome.wustl.edu	37	18	72998127	72998127	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	72998127	72998127	C	T	SNP	TSHZ1	ENST00000580243	human	ensembl	74_37	+1	known	silent	c.765	p.Y255	1.000	smart_Znf_C2H2-like	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	TSHZ1	HGNC	ENSG00000179981				26	0	0	19	3	13.6364
TSHZ1	0	genome.wustl.edu	37	18	72998294	72998294	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	72998294	72998294	A	T	SNP	TSHZ1	ENST00000580243	human	ensembl	74_37	+1	known	missense	c.932	p.Y311F	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	TSHZ1	HGNC	ENSG00000179981				73	0	0	51	7	12.069
TSHZ1	0	genome.wustl.edu	37	18	72999306	72999306	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	72999306	72999306	C	T	SNP	TSHZ1	ENST00000580243	human	ensembl	74_37	+1	known	silent	c.1944	p.G648	1.000	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	TSHZ1	HGNC	ENSG00000179981				35	0	0	47	5	9.61538
ZNF516	0	genome.wustl.edu	37	18	74091371	74091371	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	74091371	74091371	G	T	SNP	ZNF516	ENST00000443185	human	ensembl	74_37	-1	known	missense	c.2699	p.A900D	0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF516	HGNC	ENSG00000101493				59	0	0	71	4	5.33333
ZNF516	0	genome.wustl.edu	37	18	74154214	74154214	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	74154214	74154214	T	A	SNP	ZNF516	ENST00000443185	human	ensembl	74_37	-1	known	missense	c.797	p.H266L	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF516	HGNC	ENSG00000101493				48	0	0	50	7	12.2807
ZNF236	0	genome.wustl.edu	37	18	74583682	74583682	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	74583682	74583682	C	T	SNP	ZNF236	ENST00000253159	human	ensembl	74_37	+1	known	missense	c.562	p.R188W	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF236	HGNC	ENSG00000130856				107	0	0	96	6	5.88235
ZNF236	0	genome.wustl.edu	37	18	74635026	74635026	+	Splice_Site	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	74635026	74635026	G	T	SNP	ZNF236	ENST00000253159	human	ensembl	74_37	+1	known	splice_site	c.3552-1	e21-1	1.000	-	-	-	no_errors	ZNF236	HGNC	ENSG00000130856				49	0	0	33	4	10.8108
MBP	0	genome.wustl.edu	37	18	74729219	74729219	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	74729219	74729219	C	T	SNP	MBP	ENST00000355994	human	ensembl	74_37	-1	known	missense	c.145	p.A49T	1.000	NULL	pfam_Myelin_BP,prints_Myelin_BP	-	no_errors	MBP	HGNC	ENSG00000197971				60	0	0	46	5	9.80392
ATP9B	0	genome.wustl.edu	37	18	77067105	77067105	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	77067105	77067105	C	T	SNP	ATP9B	ENST00000426216	human	ensembl	74_37	+1	known	silent	c.1644	p.I548	0.098	pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP9B	HGNC	ENSG00000166377				88	0	0	54	19	26.0274
ATP9B	0	genome.wustl.edu	37	18	77089273	77089273	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	77089273	77089273	G	T	SNP	ATP9B	ENST00000426216	human	ensembl	74_37	+1	known	nonsense	c.1906	p.E636*	1.000	pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP9B	HGNC	ENSG00000166377				98	0	0	92	9	8.91089
NFATC1	0	genome.wustl.edu	37	18	77170667	77170667	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	77170667	77170667	A	G	SNP	NFATC1	ENST00000427363	human	ensembl	74_37	+1	known	missense	c.392	p.N131S	0.000	NULL	pfam_RHD,pfam_IPT,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT,pfscan_RHD,prints_NFAT	-	no_errors	NFATC1	HGNC	ENSG00000131196				52	0	0	44	4	8.33333
NFATC1	0	genome.wustl.edu	37	18	77208854	77208854	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	77208854	77208854	C	T	SNP	NFATC1	ENST00000427363	human	ensembl	74_37	+1	known	missense	c.1459	p.R487C	0.998	pfam_RHD,superfamily_p53-like_TF_DNA-bd,pfscan_RHD	pfam_RHD,pfam_IPT,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT,pfscan_RHD,prints_NFAT	-	no_errors	NFATC1	HGNC	ENSG00000131196				57	0	0	58	9	13.4328
CTDP1	0	genome.wustl.edu	37	18	77475101	77475101	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	77475101	77475101	C	T	SNP	CTDP1	ENST00000299543	human	ensembl	74_37	+1	known	silent	c.1641	p.G547	0.979	NULL	pfam_FCP1_C,pfam_NIF,superfamily_HAD-like_dom,superfamily_BRCT_dom,superfamily_Single_hybrid_motif,smart_NIF,smart_BRCT_dom,pfscan_BRCT_dom,pfscan_NIF,tigrfam_FCP1_euk	-	no_errors	CTDP1	HGNC	ENSG00000060069				42	0	0	37	2	5.12821
KCNG2	0	genome.wustl.edu	37	18	77659249	77659249	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	77659249	77659249	G	T	SNP	KCNG2	ENST00000316249	human	ensembl	74_37	+1	known	missense	c.834	p.K278N	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNG2	HGNC	ENSG00000178342				18	0	0	26	3	10.3448
ADNP2	0	genome.wustl.edu	37	18	77894427	77894427	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	77894427	77894427	A	G	SNP	ADNP2	ENST00000262198	human	ensembl	74_37	+1	known	silent	c.1131	p.P377	0.018	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ADNP2	HGNC	ENSG00000101544				95	0	0	88	33	27.2727
ADNP2	0	genome.wustl.edu	37	18	77894960	77894960	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	77894960	77894960	C	A	SNP	ADNP2	ENST00000262198	human	ensembl	74_37	+1	known	missense	c.1664	p.P555H	0.739	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ADNP2	HGNC	ENSG00000101544				98	0	0	94	5	5.05051
ADNP2	0	genome.wustl.edu	37	18	77895701	77895701	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	77895701	77895701	A	T	SNP	ADNP2	ENST00000262198	human	ensembl	74_37	+1	known	missense	c.2405	p.D802V	0.997	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ADNP2	HGNC	ENSG00000101544				133	0	0	126	14	10
PTPRM	0	genome.wustl.edu	37	18	8069784	8069784	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	8069784	8069784	C	T	SNP	PTPRM	ENST00000400060	human	ensembl	74_37	+1	known	silent	c.1233	p.H411	0.999	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Ig_sub,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRM	HGNC	ENSG00000173482				40	0	0	24	4	14.2857
PTPRM	0	genome.wustl.edu	37	18	8370924	8370924	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	8370924	8370924	A	T	SNP	PTPRM	ENST00000400060	human	ensembl	74_37	+1	known	missense	c.3094	p.I1032L	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Ig_sub,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRM	HGNC	ENSG00000173482				96	0	0	73	5	6.41026
PTPRM	0	genome.wustl.edu	37	18	8376167	8376167	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	8376167	8376167	C	T	SNP	PTPRM	ENST00000400060	human	ensembl	74_37	+1	known	missense	c.3298	p.P1100S	0.999	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Ig_sub,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRM	HGNC	ENSG00000173482				43	0	0	36	9	20
ANKRD12	0	genome.wustl.edu	37	18	9211676	9211676	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	9211676	9211676	T	C	SNP	ANKRD12	ENST00000262126	human	ensembl	74_37	+1	known	silent	c.546	p.N182	1.000	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD12	HGNC	ENSG00000101745				84	0	0	50	4	7.40741
RALBP1	0	genome.wustl.edu	37	18	9522203	9522203	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	9522203	9522203	A	G	SNP	RALBP1	ENST00000019317	human	ensembl	74_37	+1	known	missense	c.749	p.E250G	1.000	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	RALBP1	HGNC	ENSG00000017797				81	0	0	59	7	10.6061
RALBP1	0	genome.wustl.edu	37	18	9530884	9530884	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	9530884	9530884	T	A	SNP	RALBP1	ENST00000019317	human	ensembl	74_37	+1	known	missense	c.1400	p.V467D	1.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	RALBP1	HGNC	ENSG00000017797				70	0	0	35	3	7.89474
RALBP1	0	genome.wustl.edu	37	18	9535901	9535901	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	9535901	9535901	C	T	SNP	RALBP1	ENST00000019317	human	ensembl	74_37	+1	known	missense	c.1934	p.S645L	1.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	RALBP1	HGNC	ENSG00000017797				27	0	0	19	8	29.6296
COL5A3	0	genome.wustl.edu	37	19	10108053	10108053	+	Silent	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	10108053	10108053	A	C	SNP	COL5A3	ENST00000264828	human	ensembl	74_37	-1	known	silent	c.1257	p.G419	0.016	pfam_Collagen	pfam_Collagen,pfam_Fib_collagen_C,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL5A3	HGNC	ENSG00000080573				35	0	0	18	4	18.1818
DNMT1	0	genome.wustl.edu	37	19	10247916	10247916	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	10247916	10247916	G	T	SNP	DNMT1	ENST00000359526	human	ensembl	74_37	-1	known	missense	c.4334	p.P1445H	1.000	pirsf_DNA_C5-MeTrfase_1_euk,pfam_C5_MeTfrase	pirsf_DNA_C5-MeTrfase_1_euk,pfam_C5_MeTfrase,pfam_BAH_dom,pfam_Cytosine_MeTrfase1_RFD,pfam_DMAP1-bd,pfam_Znf_CXXC,smart_BAH_dom,prints_C5_MeTfrase,pfscan_BAH_dom,pfscan_Znf_CXXC	-	no_errors	DNMT1	HGNC	ENSG00000130816				16	0	0	15	3	16.6667
DNMT1	0	genome.wustl.edu	37	19	10250789	10250789	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	10250789	10250789	C	A	SNP	DNMT1	ENST00000359526	human	ensembl	74_37	-1	known	missense	c.3739	p.G1247C	1.000	pirsf_DNA_C5-MeTrfase_1_euk,pfam_C5_MeTfrase	pirsf_DNA_C5-MeTrfase_1_euk,pfam_C5_MeTfrase,pfam_BAH_dom,pfam_Cytosine_MeTrfase1_RFD,pfam_DMAP1-bd,pfam_Znf_CXXC,smart_BAH_dom,prints_C5_MeTfrase,pfscan_BAH_dom,pfscan_Znf_CXXC	-	no_errors	DNMT1	HGNC	ENSG00000130816				55	0	0	68	5	6.84932
RAVER1	0	genome.wustl.edu	37	19	10428998	10428998	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	10428998	10428998	G	A	SNP	RAVER1	ENST00000293677	human	ensembl	74_37	-1	known	silent	c.1947	p.G649	0.002	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RAVER1	HGNC	ENSG00000161847				16	0	0	15	7	31.8182
KEAP1	0	genome.wustl.edu	37	19	10610576	10610576	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	10610576	10610576	G	A	SNP	KEAP1	ENST00000171111	human	ensembl	74_37	-1	known	missense	c.134	p.S45F	1.000	pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KEAP1	HGNC	ENSG00000079999				121	0	0	101	12	10.6195
POLR2E	0	genome.wustl.edu	37	19	1094045	1094045	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	1094045	1094045	C	T	SNP	POLR2E	ENST00000215587	human	ensembl	74_37	-1	known	silent	c.90	p.Q30	1.000	pfam_RNA_pol_Rpb5_N,superfamily_RNA_pol_Rpb5_N,pirsf_DNA_RNA_pol_RPB5_euk/virus	pfam_RNA_pol_subH/Rpb5_C,pfam_RNA_pol_Rpb5_N,superfamily_RNA_pol_Rpb5_N,superfamily_RNA_pol_subH/Rpb5_C,pirsf_DNA_RNA_pol_RPB5_euk/virus	-	no_errors	POLR2E	HGNC	ENSG00000099817				33	0	0	28	4	12.5
SMARCA4	0	genome.wustl.edu	37	19	11113781	11113781	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	11113781	11113781	G	A	SNP	SMARCA4	ENST00000358026	human	ensembl	74_37	+1	known	missense	c.1889	p.G630D	1.000	pfam_BRK_domain,smart_BRK_domain	pfam_SNF2_N,pfam_Bromodomain,pfam_BRK_domain,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,pfam_Gln-Leu-Gln_QLQ,superfamily_P-loop_NTPase,superfamily_Bromodomain,smart_Gln-Leu-Gln_QLQ,smart_HAS_subgr,smart_BRK_domain,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Bromodomain,prints_Bromodomain,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Bromodomain	-	no_errors	SMARCA4	HGNC	ENSG00000127616				77	0	0	82	9	9.89011
SMARCA4	0	genome.wustl.edu	37	19	11121158	11121158	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	11121158	11121158	T	C	SNP	SMARCA4	ENST00000358026	human	ensembl	74_37	+1	known	missense	c.2225	p.V742A	1.000	superfamily_P-loop_NTPase	pfam_SNF2_N,pfam_Bromodomain,pfam_BRK_domain,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,pfam_Gln-Leu-Gln_QLQ,superfamily_P-loop_NTPase,superfamily_Bromodomain,smart_Gln-Leu-Gln_QLQ,smart_HAS_subgr,smart_BRK_domain,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Bromodomain,prints_Bromodomain,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Bromodomain	-	no_errors	SMARCA4	HGNC	ENSG00000127616				104	0	0	99	10	9.17431
SMARCA4	0	genome.wustl.edu	37	19	11135038	11135038	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	11135038	11135038	C	T	SNP	SMARCA4	ENST00000358026	human	ensembl	74_37	+1	known	missense	c.3005	p.A1002V	0.982	pfam_SNF2_N,superfamily_P-loop_NTPase	pfam_SNF2_N,pfam_Bromodomain,pfam_BRK_domain,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,pfam_Gln-Leu-Gln_QLQ,superfamily_P-loop_NTPase,superfamily_Bromodomain,smart_Gln-Leu-Gln_QLQ,smart_HAS_subgr,smart_BRK_domain,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Bromodomain,prints_Bromodomain,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Bromodomain	-	no_errors	SMARCA4	HGNC	ENSG00000127616				46	0	0	40	9	18.3673
DOCK6	0	genome.wustl.edu	37	19	11311643	11311643	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	11311643	11311643	G	A	SNP	DOCK6	ENST00000294618	human	ensembl	74_37	-1	known	missense	c.5774	p.P1925L	0.985	pfam_DOCK_C	pfam_DOCK_C,pfam_DOCK_C/D_N	-	no_errors	DOCK6	HGNC	ENSG00000130158				56	0	0	50	7	12.2807
LPPR2	0	genome.wustl.edu	37	19	11473321	11473321	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	11473321	11473321	G	A	SNP	LPPR2	ENST00000591608	human	ensembl	74_37	+1	known	missense	c.721	p.V241M	1.000	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	-	no_errors	DKFZP761J1410	Uniprot_gn	ENSG00000105520				50	0	0	44	8	15.3846
ZNF823	0	genome.wustl.edu	37	19	11832634	11832634	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	11832634	11832634	C	A	SNP	ZNF823	ENST00000341191	human	ensembl	74_37	-1	known	missense	c.1715	p.G572V	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF823	HGNC	ENSG00000197933				98	0	0	73	7	8.75
ZNF441	0	genome.wustl.edu	37	19	11891793	11891793	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	11891793	11891793	C	G	SNP	ZNF441	ENST00000357901	human	ensembl	74_37	+1	known	missense	c.1154	p.T385S	0.999	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF441	HGNC	ENSG00000197044				103	0	0	78	7	8.23529
ZNF700	0	genome.wustl.edu	37	19	12059503	12059503	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	12059503	12059503	T	C	SNP	ZNF700	ENST00000254321	human	ensembl	74_37	+1	known	missense	c.664	p.Y222H	0.146	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF700	HGNC	ENSG00000196757				109	0	0	76	7	8.43373
ZNF700	0	genome.wustl.edu	37	19	12060238	12060238	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	12060238	12060238	A	G	SNP	ZNF700	ENST00000254321	human	ensembl	74_37	+1	known	missense	c.1399	p.T467A	0.983	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF700	HGNC	ENSG00000196757				78	0	0	50	6	10.7143
ZNF700	0	genome.wustl.edu	37	19	12060550	12060550	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	12060550	12060550	A	G	SNP	ZNF700	ENST00000254321	human	ensembl	74_37	+1	known	missense	c.1711	p.K571E	0.999	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF700	HGNC	ENSG00000196757				101	0	0	74	6	7.5
ZNF700	0	genome.wustl.edu	37	19	12060661	12060661	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	12060661	12060661	C	T	SNP	ZNF700	ENST00000254321	human	ensembl	74_37	+1	known	nonsense	c.1822	p.R608*	0.002	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF700	HGNC	ENSG00000196757				98	0	0	71	6	7.79221
ZNF763	0	genome.wustl.edu	37	19	12087930	12087930	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	12087930	12087930	A	C	SNP	ZNF763	ENST00000538752	human	ensembl	74_37	+1	known	missense	c.141	p.K47N	0.035	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Krueppel-associated_box,pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF763	HGNC	ENSG00000197054				170	0	0	157	16	9.24855
ZNF433	0	genome.wustl.edu	37	19	12126679	12126679	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	12126679	12126679	T	C	SNP	ZNF433	ENST00000344980	human	ensembl	74_37	-1	known	missense	c.1003	p.K335E	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF433	HGNC	ENSG00000197647				57	0	0	47	8	14.5455
ZNF433	0	genome.wustl.edu	37	19	12129088	12129088	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	12129088	12129088	T	C	SNP	ZNF433	ENST00000344980	human	ensembl	74_37	-1	known	missense	c.32	p.D11G	0.995	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF433	HGNC	ENSG00000197647				92	0	0	69	9	11.5385
ZNF20	0	genome.wustl.edu	37	19	12244607	12244607	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	12244607	12244607	A	T	SNP	ZNF20	ENST00000334213	human	ensembl	74_37	-1	known	missense	c.394	p.S132T	0.002	pfscan_Znf_C2H2	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF20	HGNC	ENSG00000132010				361	0	0	290	22	7.05128
C19orf26	0	genome.wustl.edu	37	19	1231118	1231118	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	1231118	1231118	G	A	SNP	C19orf26	ENST00000382477	human	ensembl	74_37	-1	known	missense	c.1196	p.P399L	1.000	NULL	NULL	-	no_errors	C19orf26	HGNC	ENSG00000099625				37	0	0	36	7	16.2791
ZNF563	0	genome.wustl.edu	37	19	12430623	12430623	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	12430623	12430623	A	G	SNP	ZNF563	ENST00000293725	human	ensembl	74_37	-1	known	silent	c.216	p.S72	0.663	pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF563	HGNC	ENSG00000188868				140	0	0	102	7	6.42202
ZNF442	0	genome.wustl.edu	37	19	12461945	12461945	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	12461945	12461945	G	A	SNP	ZNF442	ENST00000242804	human	ensembl	74_37	-1	known	missense	c.454	p.P152S	1.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF442	HGNC	ENSG00000198342				160	0	0	116	15	11.4504
ZNF799	0	genome.wustl.edu	37	19	12502889	12502889	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	12502889	12502889	C	T	SNP	ZNF799	ENST00000430385	human	ensembl	74_37	-1	known	missense	c.323	p.S108N	0.152	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF799	HGNC	ENSG00000196466				99	0	0	103	8	7.20721
ZNF490	0	genome.wustl.edu	37	19	12692186	12692186	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	12692186	12692186	A	C	SNP	ZNF490	ENST00000311437	human	ensembl	74_37	-1	known	missense	c.703	p.F235V	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF490	HGNC	ENSG00000188033				70	0	0	70	4	5.40541
C19orf24	0	genome.wustl.edu	37	19	1278978	1278978	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	1278978	1278978	C	T	SNP	C19orf24	ENST00000469144	human	ensembl	74_37	+1	putative	missense	c.169	p.P57S	0.002	NULL	NULL	-	no_errors	C19orf24	HGNC	ENSG00000228300				77	0	0	71	4	5.33333
ASNA1	0	genome.wustl.edu	37	19	12856292	12856292	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	12856292	12856292	C	T	SNP	ASNA1	ENST00000357332	human	ensembl	74_37	+1	known	silent	c.411	p.S137	1.000	pfam_Anion-transp_ATPase-like_dom,pfam_CobQ/CobB/MinD/ParA_Nub-bd_dom,superfamily_P-loop_NTPase,tigrfam_ATPase_ArsA/GET3	pfam_Anion-transp_ATPase-like_dom,pfam_CobQ/CobB/MinD/ParA_Nub-bd_dom,superfamily_P-loop_NTPase,tigrfam_ATPase_ArsA/GET3	-	no_errors	ASNA1	HGNC	ENSG00000198356				71	0	0	69	6	8
RNASEH2A	0	genome.wustl.edu	37	19	12918104	12918104	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	12918104	12918104	T	C	SNP	RNASEH2A	ENST00000221486	human	ensembl	74_37	+1	known	missense	c.284	p.V95A	0.997	pfam_RNase_HII/HIII_dom,superfamily_RNaseH-like_dom,tigrfam_RNase_H2_suA	pfam_RNase_HII/HIII_dom,superfamily_RNaseH-like_dom,tigrfam_RNase_H2_suA	-	no_errors	RNASEH2A	HGNC	ENSG00000104889				190	0	0	176	16	8.33333
MAST1	0	genome.wustl.edu	37	19	12984255	12984255	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	12984255	12984255	G	A	SNP	MAST1	ENST00000251472	human	ensembl	74_37	+1	known	silent	c.3381	p.S1127	0.930	NULL	pfam_MA_Ser/Thr_Kinase_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,superfamily_Kinase-like_dom,superfamily_MAST_pre-PK_dom,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PDZ,pfscan_PDZ,pfscan_Prot_kinase_dom	-	no_errors	MAST1	HGNC	ENSG00000105613				48	0	0	37	16	30.1887
GCDH	0	genome.wustl.edu	37	19	13006890	13006890	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	13006890	13006890	A	G	SNP	GCDH	ENST00000222214	human	ensembl	74_37	+1	known	missense	c.590	p.Y197C	1.000	pfam_Acyl-CoA_Oxase/DH_cen-dom,superfamily_AcylCoA_DH/oxidase_NM_dom	pfam_AcylCo_DH/oxidase_C,pfam_AcylCoA_DH/ox_N,pfam_Acyl-CoA_Oxase/DH_cen-dom,pfam_Acyl-CoA_DH_2_C,superfamily_AcylCoA_DH/oxidase_NM_dom,superfamily_AcylCo_DH/oxidase_C	-	no_errors	GCDH	HGNC	ENSG00000105607				75	0	0	96	7	6.79612
TRMT1	0	genome.wustl.edu	37	19	13226211	13226211	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	13226211	13226211	G	A	SNP	TRMT1	ENST00000357720	human	ensembl	74_37	-1	known	missense	c.523	p.P175S	1.000	pfam_TRM1,pfam_tRNA_Trfase_Trm5/Tyw2,tigrfam_TRM1	pfam_TRM1,pfam_Znf_CCCH,pfam_tRNA_Trfase_Trm5/Tyw2,smart_Znf_CCCH,tigrfam_TRM1	-	no_errors	TRMT1	HGNC	ENSG00000104907				47	0	0	43	5	10.4167
STX10	0	genome.wustl.edu	37	19	13255675	13255675	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	13255675	13255675	C	T	SNP	STX10	ENST00000587230	human	ensembl	74_37	-1	known	missense	c.481	p.D161N	1.000	smart_T_SNARE_dom,pfscan_T_SNARE_dom	pfam_Syntaxin-6_N,pfam_T_SNARE_dom,superfamily_t-SNARE,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	STX10	HGNC	ENSG00000104915				27	0	0	15	3	16.6667
STX10	0	genome.wustl.edu	37	19	13256151	13256151	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	13256151	13256151	G	A	SNP	STX10	ENST00000587230	human	ensembl	74_37	-1	known	missense	c.422	p.A141V	0.006	NULL	pfam_Syntaxin-6_N,pfam_T_SNARE_dom,superfamily_t-SNARE,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	STX10	HGNC	ENSG00000104915				43	0	0	38	5	11.6279
MUM1	0	genome.wustl.edu	37	19	1360474	1360474	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	1360474	1360474	A	C	SNP	MUM1	ENST00000344663	human	ensembl	74_37	+1	known	missense	c.557	p.N186T	0.000	NULL	pfam_PWWP_dom	-	no_errors	MUM1	HGNC	ENSG00000160953				46	0	0	36	2	5.26316
CC2D1A	0	genome.wustl.edu	37	19	14031712	14031712	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	14031712	14031712	G	T	SNP	CC2D1A	ENST00000318003	human	ensembl	74_37	+1	known	missense	c.1618	p.G540W	1.000	smart_DM14	pfam_C2_dom,superfamily_C2_dom,smart_DM14,smart_C2_dom	-	no_errors	CC2D1A	HGNC	ENSG00000132024				72	0	0	65	4	5.7971
CC2D1A	0	genome.wustl.edu	37	19	14040966	14040966	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	14040966	14040966	G	T	SNP	CC2D1A	ENST00000318003	human	ensembl	74_37	+1	known	missense	c.2786	p.R929M	1.000	NULL	pfam_C2_dom,superfamily_C2_dom,smart_DM14,smart_C2_dom	-	no_errors	CC2D1A	HGNC	ENSG00000132024				83	0	0	64	7	9.85915
PODNL1	0	genome.wustl.edu	37	19	14043557	14043557	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	14043557	14043557	G	A	SNP	PODNL1	ENST00000339560	human	ensembl	74_37	-1	known	silent	c.1500	p.C500	0.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	PODNL1	HGNC	ENSG00000132000				106	0	0	96	11	10.2804
PRKACA	0	genome.wustl.edu	37	19	14208462	14208462	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	14208462	14208462	G	A	SNP	PRKACA	ENST00000308677	human	ensembl	74_37	-1	known	missense	c.571	p.R191C	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PRKACA	HGNC	ENSG00000072062				60	0	0	58	12	17.1429
LPHN1	0	genome.wustl.edu	37	19	14266323	14266323	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	14266323	14266323	C	T	SNP	LPHN1	ENST00000340736	human	ensembl	74_37	-1	known	missense	c.3157	p.A1053T	1.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_latrophilin_rcpt_C,pfam_Olfac-like,pfam_DUF3497,pfam_GPCR_2_secretin-like,pfam_Lectin_gal-bd_dom,pfam_GPS_dom,pfam_GPCR_2_extracellular_dom,smart_Olfac-like,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_Lectin_gal-bd_dom,pfscan_Olfac-like,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_latrophilin,prints_GPCR_2_secretin-like	-	no_errors	LPHN1	HGNC	ENSG00000072071				52	0	0	55	6	9.83607
LPHN1	0	genome.wustl.edu	37	19	14273431	14273431	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	14273431	14273431	G	A	SNP	LPHN1	ENST00000340736	human	ensembl	74_37	-1	known	silent	c.1197	p.P399	0.972	NULL	pfam_GPCR_2_latrophilin_rcpt_C,pfam_Olfac-like,pfam_DUF3497,pfam_GPCR_2_secretin-like,pfam_Lectin_gal-bd_dom,pfam_GPS_dom,pfam_GPCR_2_extracellular_dom,smart_Olfac-like,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_Lectin_gal-bd_dom,pfscan_Olfac-like,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_latrophilin,prints_GPCR_2_secretin-like	-	no_errors	LPHN1	HGNC	ENSG00000072071				120	0	0	82	23	21.9048
LPHN1	0	genome.wustl.edu	37	19	14273951	14273951	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	14273951	14273951	T	A	SNP	LPHN1	ENST00000340736	human	ensembl	74_37	-1	known	missense	c.677	p.N226I	1.000	pfam_Olfac-like,smart_Olfac-like,pfscan_Olfac-like,prints_GPCR_2_latrophilin	pfam_GPCR_2_latrophilin_rcpt_C,pfam_Olfac-like,pfam_DUF3497,pfam_GPCR_2_secretin-like,pfam_Lectin_gal-bd_dom,pfam_GPS_dom,pfam_GPCR_2_extracellular_dom,smart_Olfac-like,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_Lectin_gal-bd_dom,pfscan_Olfac-like,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_latrophilin,prints_GPCR_2_secretin-like	-	no_errors	LPHN1	HGNC	ENSG00000072071				64	0	0	56	3	5.08475
LPHN1	0	genome.wustl.edu	37	19	14288424	14288424	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	14288424	14288424	T	A	SNP	LPHN1	ENST00000340736	human	ensembl	74_37	-1	known	missense	c.203	p.D68V	1.000	pfam_Lectin_gal-bd_dom,pfscan_Lectin_gal-bd_dom	pfam_GPCR_2_latrophilin_rcpt_C,pfam_Olfac-like,pfam_DUF3497,pfam_GPCR_2_secretin-like,pfam_Lectin_gal-bd_dom,pfam_GPS_dom,pfam_GPCR_2_extracellular_dom,smart_Olfac-like,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_Lectin_gal-bd_dom,pfscan_Olfac-like,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_latrophilin,prints_GPCR_2_secretin-like	-	no_errors	LPHN1	HGNC	ENSG00000072071				121	0	0	104	10	8.77193
CD97	0	genome.wustl.edu	37	19	14517536	14517536	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	14517536	14517536	C	T	SNP	CD97	ENST00000242786	human	ensembl	74_37	+1	known	silent	c.2073	p.G691	0.977	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_secretin-like,pfam_EGF-like_Ca-bd_dom,pfam_GPS_dom,pfam_EG-like_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_CD97,prints_GPCR_2_secretin-like,prints_GPCR_2_EMR1_rcpt	-	no_errors	CD97	HGNC	ENSG00000123146				173	0	0	194	22	10.1852
PKN1	0	genome.wustl.edu	37	19	14554388	14554388	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	14554388	14554388	G	A	SNP	PKN1	ENST00000342216	human	ensembl	74_37	+1	known	silent	c.447	p.Q149	1.000	pfam_HR1_rho-bd,superfamily_HR1_rho-bd,smart_HR1_rho-bd	pfam_Prot_kinase_dom,pfam_HR1_rho-bd,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_HR1_rho-bd,superfamily_C2_dom,smart_HR1_rho-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_dom	-	no_errors	PKN1	HGNC	ENSG00000123143				41	0	0	47	4	7.84314
APC2	0	genome.wustl.edu	37	19	1462161	1462161	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	1462161	1462161	C	T	SNP	APC2	ENST00000233607	human	ensembl	74_37	+1	known	missense	c.1838	p.T613I	1.000	superfamily_ARM-type_fold	pfam_APC_basic_dom,pfam_APC_dom,pfam_APC_Cys-rich_rpt,pfam_Armadillo,pfam_SAMP,superfamily_ARM-type_fold,superfamily_Prefoldin,smart_Armadillo	-	no_errors	APC2	HGNC	ENSG00000115266				9	0	0	7	4	36.3636
EMR2	0	genome.wustl.edu	37	19	14877148	14877148	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	14877148	14877148	G	T	SNP	EMR2	ENST00000315576	human	ensembl	74_37	-1	known	missense	c.533	p.T178N	0.961	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_GPCR_2_secretin-like,pfam_EGF-like_Ca-bd_dom,pfam_GPS_dom,pfam_EG-like_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_CD97,prints_GPCR_2_EMR1_rcpt,prints_GPCR_2_secretin-like	-	no_errors	EMR2	HGNC	ENSG00000127507				113	0	0	114	28	19.7183
CCDC105	0	genome.wustl.edu	37	19	15133853	15133853	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	15133853	15133853	C	T	SNP	CCDC105	ENST00000292574	human	ensembl	74_37	+1	known	silent	c.1422	p.Y474	0.907	NULL	pfam_Tektin	-	no_errors	CCDC105	HGNC	ENSG00000160994				36	0	0	18	3	14.2857
SYDE1	0	genome.wustl.edu	37	19	15224405	15224405	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	15224405	15224405	G	A	SNP	SYDE1	ENST00000342784	human	ensembl	74_37	+1	known	silent	c.1839	p.A613	0.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	SYDE1	HGNC	ENSG00000105137				193	0	0	153	28	15.4696
NOTCH3	0	genome.wustl.edu	37	19	15281259	15281259	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	15281259	15281259	C	T	SNP	NOTCH3	ENST00000263388	human	ensembl	74_37	-1	known	missense	c.4997	p.R1666Q	0.994	pirsf_Notch	pirsf_Notch,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,pfam_Ankyrin_rpt,pfam_Notch_dom,pfam_Notch_NODP_dom,pfam_Notch_NOD_dom,pfam_EGF_extracell,pfam_DUF3454_notch,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_3,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom	-	no_errors	NOTCH3	HGNC	ENSG00000074181				33	0	0	38	3	7.31707
NOTCH3	0	genome.wustl.edu	37	19	15298066	15298066	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	15298066	15298066	C	T	SNP	NOTCH3	ENST00000263388	human	ensembl	74_37	-1	known	missense	c.1690	p.A564T	1.000	pirsf_Notch,pfam_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pirsf_Notch,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,pfam_Ankyrin_rpt,pfam_Notch_dom,pfam_Notch_NODP_dom,pfam_Notch_NOD_dom,pfam_EGF_extracell,pfam_DUF3454_notch,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_3,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom	-	no_errors	NOTCH3	HGNC	ENSG00000074181				48	0	0	40	12	23.0769
EPHX3	0	genome.wustl.edu	37	19	15342831	15342831	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	15342831	15342831	G	A	SNP	EPHX3	ENST00000221730	human	ensembl	74_37	-1	known	silent	c.192	p.P64	0.087	NULL	pfam_AB_hydrolase_1,prints_Epox_hydrolase-like,prints_AB_hydrolase_1	-	no_errors	EPHX3	HGNC	ENSG00000105131				19	0	0	11	7	38.8889
BRD4	0	genome.wustl.edu	37	19	15366170	15366170	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	15366170	15366170	G	A	SNP	BRD4	ENST00000263377	human	ensembl	74_37	-1	known	missense	c.1985	p.S662F	1.000	NULL	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRD4	HGNC	ENSG00000141867				66	0	0	57	5	8.06452
AKAP8L	0	genome.wustl.edu	37	19	15512058	15512058	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	15512058	15512058	C	T	SNP	AKAP8L	ENST00000397410	human	ensembl	74_37	-1	known	missense	c.719	p.G240D	0.994	NULL	pfam_AKAP95	-	no_errors	AKAP8L	HGNC	ENSG00000011243				203	1	0.490196	217	16	6.86695
WIZ	0	genome.wustl.edu	37	19	15535436	15535436	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	15535436	15535436	G	C	SNP	WIZ	ENST00000389282	human	ensembl	74_37	-1	known	missense	c.4588	p.Q1530E	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	WIZ	HGNC	ENSG00000011451				24	0	0	16	3	15.7895
RASAL3	0	genome.wustl.edu	37	19	15562668	15562668	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	15562668	15562668	G	A	SNP	RASAL3	ENST00000343625	human	ensembl	74_37	-1	known	missense	c.2974	p.R992W	0.000	NULL	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_RasGAP,pfscan_RasGAP	-	no_errors	RASAL3	HGNC	ENSG00000105122				75	0	0	59	12	16.9014
RASAL3	0	genome.wustl.edu	37	19	15562916	15562916	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	15562916	15562916	G	T	SNP	RASAL3	ENST00000343625	human	ensembl	74_37	-1	known	missense	c.2832	p.S944R	0.006	NULL	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_RasGAP,pfscan_RasGAP	-	no_errors	RASAL3	HGNC	ENSG00000105122				100	0	0	86	21	19.6262
RASAL3	0	genome.wustl.edu	37	19	15566970	15566970	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	15566970	15566970	C	T	SNP	RASAL3	ENST00000343625	human	ensembl	74_37	-1	known	missense	c.1666	p.A556T	0.871	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,smart_RasGAP,pfscan_RasGAP	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_RasGAP,pfscan_RasGAP	-	no_errors	RASAL3	HGNC	ENSG00000105122				73	0	0	44	17	27.8689
PGLYRP2	0	genome.wustl.edu	37	19	15587373	15587373	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	15587373	15587373	C	T	SNP	PGLYRP2	ENST00000292609	human	ensembl	74_37	-1	known	silent	c.108	p.E36	0.000	NULL	pfam_Amidase_domain,superfamily_Amidase_domain,smart_PGRP_domain_met/bac,smart_Amidase_domain	-	no_errors	PGLYRP2	HGNC	ENSG00000161031				26	0	0	23	4	14.8148
MBD3	0	genome.wustl.edu	37	19	1578436	1578436	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	1578436	1578436	G	A	SNP	MBD3	ENST00000156825	human	ensembl	74_37	-1	known	missense	c.779	p.A260V	0.971	superfamily_ARM-type_fold	pfam_Methyl_CpG_DNA-bd,superfamily_DNA-bd_dom,superfamily_ARM-type_fold,smart_Methyl_CpG_DNA-bd,pfscan_Methyl_CpG_DNA-bd	-	no_errors	MBD3	HGNC	ENSG00000071655				40	0	0	50	3	5.66038
MBD3	0	genome.wustl.edu	37	19	1585094	1585094	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	1585094	1585094	C	T	SNP	MBD3	ENST00000156825	human	ensembl	74_37	-1	known	missense	c.230	p.S77N	1.000	superfamily_DNA-bd_dom	pfam_Methyl_CpG_DNA-bd,superfamily_DNA-bd_dom,superfamily_ARM-type_fold,smart_Methyl_CpG_DNA-bd,pfscan_Methyl_CpG_DNA-bd	-	no_errors	MBD3	HGNC	ENSG00000071655				32	0	0	29	5	14.7059
OR10H3	0	genome.wustl.edu	37	19	15852497	15852497	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	15852497	15852497	G	A	SNP	OR10H3	ENST00000305892	human	ensembl	74_37	+1	known	missense	c.295	p.A99T	0.018	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10H3	HGNC	ENSG00000171936				301	1	0.331126	262	29	9.96564
MED26	0	genome.wustl.edu	37	19	16686957	16686957	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	16686957	16686957	C	T	SNP	MED26	ENST00000263390	human	ensembl	74_37	-1	known	missense	c.1684	p.G562R	1.000	NULL	pfam_TFIIS_N,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub	-	no_errors	MED26	HGNC	ENSG00000105085				72	0	0	70	7	9.09091
TMEM38A	0	genome.wustl.edu	37	19	16790815	16790815	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	16790815	16790815	C	T	SNP	TMEM38A	ENST00000187762	human	ensembl	74_37	+1	known	missense	c.145	p.R49C	0.998	pfam_TRIC_channel	pfam_TRIC_channel	-	no_errors	TMEM38A	HGNC	ENSG00000072954				26	0	0	24	9	27.2727
NWD1	0	genome.wustl.edu	37	19	16910714	16910714	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	16910714	16910714	A	T	SNP	NWD1	ENST00000379808	human	ensembl	74_37	+1	known	missense	c.3477	p.E1159D	0.210	superfamily_WD40_repeat_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_P-loop_NTPase,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NWD1	HGNC	ENSG00000188039				67	0	0	80	6	6.97674
NWD1	0	genome.wustl.edu	37	19	16910875	16910875	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	16910875	16910875	A	G	SNP	NWD1	ENST00000379808	human	ensembl	74_37	+1	known	missense	c.3638	p.D1213G	1.000	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_P-loop_NTPase,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NWD1	HGNC	ENSG00000188039				55	0	0	58	5	7.93651
SIN3B	0	genome.wustl.edu	37	19	16982177	16982177	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	16982177	16982177	A	G	SNP	SIN3B	ENST00000379803	human	ensembl	74_37	+1	known	missense	c.2656	p.M886V	1.000	NULL	pfam_PAH,pfam_HDAC_interact,superfamily_PAH,smart_HDAC_interact	-	no_errors	SIN3B	HGNC	ENSG00000127511				49	0	0	46	3	6.12245
SIN3B	0	genome.wustl.edu	37	19	16989146	16989146	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	16989146	16989146	T	C	SNP	SIN3B	ENST00000379803	human	ensembl	74_37	+1	known	missense	c.3203	p.I1068T	1.000	NULL	pfam_PAH,pfam_HDAC_interact,superfamily_PAH,smart_HDAC_interact	-	no_errors	SIN3B	HGNC	ENSG00000127511				27	0	0	23	3	11.5385
CPAMD8	0	genome.wustl.edu	37	19	17007077	17007077	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	17007077	17007077	G	A	SNP	CPAMD8	ENST00000443236	human	ensembl	74_37	-1	known	missense	c.5477	p.P1826L	0.001	NULL	pfam_A2M_comp,pfam_A2M_N_2,pfam_Methyltransf_FA,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_Kazal_dom,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd,smart_Kazal_dom	-	no_errors	CPAMD8	HGNC	ENSG00000160111				33	0	0	32	7	17.9487
CPAMD8	0	genome.wustl.edu	37	19	17088263	17088263	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	17088263	17088263	C	T	SNP	CPAMD8	ENST00000443236	human	ensembl	74_37	-1	known	missense	c.1814	p.R605H	1.000	pfam_A2M_N_2	pfam_A2M_comp,pfam_A2M_N_2,pfam_Methyltransf_FA,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_Kazal_dom,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd,smart_Kazal_dom	-	no_errors	CPAMD8	HGNC	ENSG00000160111				75	0	0	71	10	12.3457
GTPBP3	0	genome.wustl.edu	37	19	17449437	17449437	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	17449437	17449437	G	T	SNP	GTPBP3	ENST00000358792	human	ensembl	74_37	+1	known	missense	c.478	p.G160W	1.000	superfamily_P-loop_NTPase	pfam_GTP-bd_TrmE_N,pfam_GTP_binding_domain,superfamily_P-loop_NTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	GTPBP3	HGNC	ENSG00000130299				69	0	0	61	4	6.15385
PLVAP	0	genome.wustl.edu	37	19	17487970	17487970	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	17487970	17487970	A	G	SNP	PLVAP	ENST00000252590	human	ensembl	74_37	-1	known	missense	c.128	p.L43P	0.994	pfam_PV-1	pfam_PV-1	-	no_errors	PLVAP	HGNC	ENSG00000130300				52	0	0	62	6	8.82353
COLGALT1	0	genome.wustl.edu	37	19	17679355	17679355	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	17679355	17679355	G	A	SNP	COLGALT1	ENST00000252599	human	ensembl	74_37	+1	known	missense	c.662	p.R221H	1.000	NULL	pfam_Glyco_trans_25	-	no_errors	COLGALT1	HGNC	ENSG00000130309				62	0	0	55	4	6.77966
UNC13A	0	genome.wustl.edu	37	19	17743650	17743650	+	Silent	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	17743650	17743650	G	T	SNP	UNC13A	ENST00000428389	human	ensembl	74_37	-1	known	silent	c.3633	p.L1211	0.783	NULL	pfam_Munc13_subgr_dom-2,pfam_C2_dom,pfam_Ca-dep_secretion_activator,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_dom,smart_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13A	HGNC	ENSG00000130477				76	0	0	82	5	5.74713
UNC13A	0	genome.wustl.edu	37	19	17759367	17759367	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	17759367	17759367	C	T	SNP	UNC13A	ENST00000428389	human	ensembl	74_37	-1	known	silent	c.1953	p.T651	0.611	pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_Kinase_C-like_PE/DAG-bd	pfam_Munc13_subgr_dom-2,pfam_C2_dom,pfam_Ca-dep_secretion_activator,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_dom,smart_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13A	HGNC	ENSG00000130477				50	0	0	53	6	10.1695
UNC13A	0	genome.wustl.edu	37	19	17774358	17774358	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	17774358	17774358	C	T	SNP	UNC13A	ENST00000428389	human	ensembl	74_37	-1	known	missense	c.806	p.G269D	1.000	NULL	pfam_Munc13_subgr_dom-2,pfam_C2_dom,pfam_Ca-dep_secretion_activator,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_dom,smart_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13A	HGNC	ENSG00000130477				25	0	0	19	4	17.3913
UNC13A	0	genome.wustl.edu	37	19	17780379	17780379	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	17780379	17780379	C	T	SNP	UNC13A	ENST00000428389	human	ensembl	74_37	-1	known	missense	c.641	p.R214H	1.000	superfamily_C2_dom	pfam_Munc13_subgr_dom-2,pfam_C2_dom,pfam_Ca-dep_secretion_activator,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_dom,smart_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13A	HGNC	ENSG00000130477				31	0	0	22	15	40.5405
MAP1S	0	genome.wustl.edu	37	19	17845130	17845130	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	17845130	17845130	G	A	SNP	MAP1S	ENST00000324096	human	ensembl	74_37	+1	known	missense	c.3073	p.A1025T	1.000	NULL	NULL	-	no_errors	MAP1S	HGNC	ENSG00000130479				37	0	0	22	13	37.1429
JAK3	0	genome.wustl.edu	37	19	17943652	17943652	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	17943652	17943652	C	T	SNP	JAK3	ENST00000458235	human	ensembl	74_37	-1	known	missense	c.2437	p.D813N	1.000	pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_FERM_central,smart_Band_41_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_FERM_domain,pfscan_Prot_kinase_dom,prints_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Tyr_kinase_non-rcpt_Jak3,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	JAK3	HGNC	ENSG00000105639				85	0	0	89	20	18.3486
SLC5A5	0	genome.wustl.edu	37	19	17988883	17988883	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	17988883	17988883	G	T	SNP	SLC5A5	ENST00000222248	human	ensembl	74_37	+1	known	missense	c.950	p.R317L	0.361	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A5	HGNC	ENSG00000105641				60	0	0	43	5	10.4167
REXO1	0	genome.wustl.edu	37	19	1827534	1827534	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	1827534	1827534	C	T	SNP	REXO1	ENST00000170168	human	ensembl	74_37	-1	known	silent	c.1254	p.P418	0.000	NULL	pfam_Exonuclease_RNaseT/DNA_pol3,superfamily_RNaseH-like_dom,smart_Exonuclease	-	no_errors	REXO1	HGNC	ENSG00000079313				37	0	0	36	6	14.2857
REXO1	0	genome.wustl.edu	37	19	1827735	1827735	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	1827735	1827735	C	T	SNP	REXO1	ENST00000170168	human	ensembl	74_37	-1	known	silent	c.1053	p.P351	0.000	NULL	pfam_Exonuclease_RNaseT/DNA_pol3,superfamily_RNaseH-like_dom,smart_Exonuclease	-	no_errors	REXO1	HGNC	ENSG00000079313				19	0	0	15	4	21.0526
PDE4C	0	genome.wustl.edu	37	19	18329232	18329232	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	18329232	18329232	T	C	SNP	PDE4C	ENST00000355502	human	ensembl	74_37	-1	known	missense	c.1142	p.Y381C	1.000	NULL	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE4C	HGNC	ENSG00000105650				119	0	0	141	12	7.84314
ISYNA1	0	genome.wustl.edu	37	19	18547813	18547813	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	18547813	18547813	T	G	SNP	ISYNA1	ENST00000338128	human	ensembl	74_37	-1	known	missense	c.385	p.M129L	1.000	pfam_Myo-inos-1-P_Synthase,pirsf_Myo-inos-1-P_Synthase	pfam_Myo-inos-1-P_Synthase,pfam_Myo-inos-1-P_Synthase_GAPDH,pirsf_Myo-inos-1-P_Synthase	-	no_errors	ISYNA1	HGNC	ENSG00000105655				28	0	0	35	3	7.89474
CRLF1	0	genome.wustl.edu	37	19	18707568	18707568	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	18707568	18707568	G	T	SNP	CRLF1	ENST00000392386	human	ensembl	74_37	-1	known	nonsense	c.888	p.C296*	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Growth/epo_recpt_lig-bind,pfam_IL-6_rcpt_alpha-bd,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	CRLF1	HGNC	ENSG00000006016				33	0	0	35	5	12.5
CRTC1	0	genome.wustl.edu	37	19	18876229	18876229	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	18876229	18876229	G	A	SNP	CRTC1	ENST00000338797	human	ensembl	74_37	+1	known	missense	c.950	p.G317D	0.711	NULL	NULL	-	no_errors	CRTC1	HGNC	ENSG00000105662				164	0	0	165	21	11.2903
UPF1	0	genome.wustl.edu	37	19	18965708	18965708	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	18965708	18965708	C	T	SNP	UPF1	ENST00000599848	human	ensembl	74_37	+1	known	missense	c.1319	p.T440M	0.997	NULL	pfam_RNA-helicase_UPF1_UPF2-interct,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase	-	no_errors	UPF1	HGNC	ENSG00000005007				32	0	0	32	7	17.9487
GDF1	0	genome.wustl.edu	37	19	18981026	18981026	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	18981026	18981026	C	T	SNP	GDF1	ENST00000247005	human	ensembl	74_37	-1	known	missense	c.91	p.V31M	0.003	NULL	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C,prints_Inhibin_asu	-	no_errors	GDF1	HGNC	ENSG00000130283				11	0	0	7	3	30
HOMER3	0	genome.wustl.edu	37	19	19040352	19040352	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	19040352	19040352	C	T	SNP	HOMER3	ENST00000392351	human	ensembl	74_37	-1	known	missense	c.986	p.R329Q	0.005	NULL	pfam_WH1/EVH1,smart_WH1/EVH1,pfscan_WH1/EVH1	-	no_errors	HOMER3	HGNC	ENSG00000051128				8	0	0	4	5	55.5556
SUGP2	0	genome.wustl.edu	37	19	19120711	19120711	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	19120711	19120711	T	C	SNP	SUGP2	ENST00000337018	human	ensembl	74_37	-1	known	missense	c.2291	p.D764G	0.009	superfamily_Surp	pfam_Surp,pfam_G_patch_dom,superfamily_Surp,smart_Surp,smart_G_patch_dom,pfscan_Surp,pfscan_G_patch_dom	-	no_errors	SUGP2	HGNC	ENSG00000064607				118	0	0	127	9	6.61765
RFXANK	0	genome.wustl.edu	37	19	19308333	19308333	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	19308333	19308333	A	G	SNP	RFXANK	ENST00000303088	human	ensembl	74_37	+1	known	missense	c.341	p.D114G	0.983	superfamily_Ankyrin_rpt-contain_dom,pirsf_DNA-bd_RFXANK,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pirsf_DNA-bd_RFXANK,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	RFXANK	HGNC	ENSG00000064490				33	0	0	34	5	12.8205
HAPLN4	0	genome.wustl.edu	37	19	19371751	19371751	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	19371751	19371751	G	A	SNP	HAPLN4	ENST00000291481	human	ensembl	74_37	-1	known	nonsense	c.355	p.Q119*	1.000	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Link,pfam_Ig_V-set,superfamily_C-type_lectin_fold,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Link,pfscan_Link,pfscan_Ig-like_dom,prints_Link	-	no_errors	HAPLN4	HGNC	ENSG00000187664				51	0	0	46	15	24.5902
HAPLN4	0	genome.wustl.edu	37	19	19371882	19371882	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	19371882	19371882	G	A	SNP	HAPLN4	ENST00000291481	human	ensembl	74_37	-1	known	missense	c.224	p.A75V	0.068	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Link,pfam_Ig_V-set,superfamily_C-type_lectin_fold,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Link,pfscan_Link,pfscan_Ig-like_dom,prints_Link	-	no_errors	HAPLN4	HGNC	ENSG00000187664				39	0	0	30	6	16.6667
CILP2	0	genome.wustl.edu	37	19	19655293	19655293	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	19655293	19655293	C	T	SNP	CILP2	ENST00000291495	human	ensembl	74_37	+1	known	missense	c.1939	p.L647F	1.000	NULL	pfam_Thrombospondin_1_rpt,pfam_Ig_I-set,superfamily_Thrombospondin_1_rpt,superfamily_CarboxyPept-like_regulatory,superfamily_Carb-bd-like_fold,smart_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom	-	no_errors	CILP2	HGNC	ENSG00000160161				54	0	0	55	5	8.33333
GMIP	0	genome.wustl.edu	37	19	19745618	19745618	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	19745618	19745618	T	C	SNP	GMIP	ENST00000203556	human	ensembl	74_37	-1	known	missense	c.1870	p.K624E	1.000	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom	-	no_errors	GMIP	HGNC	ENSG00000089639				82	0	0	67	19	22.093
ATP13A1	0	genome.wustl.edu	37	19	19758026	19758026	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	19758026	19758026	T	C	SNP	ATP13A1	ENST00000357324	human	ensembl	74_37	-1	known	missense	c.3017	p.Y1006C	1.000	tigrfam_ATPase_P-typ_Cation_typ_V	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Cation_typ_V,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP13A1	HGNC	ENSG00000105726				87	0	0	91	11	10.7843
ATP13A1	0	genome.wustl.edu	37	19	19766929	19766929	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	19766929	19766929	C	T	SNP	ATP13A1	ENST00000357324	human	ensembl	74_37	-1	known	missense	c.1147	p.V383I	0.977	pfam_ATPase_P-typ_transduc_dom_A,tigrfam_ATPase_P-typ_Cation_typ_V	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Cation_typ_V,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP13A1	HGNC	ENSG00000105726				73	0	0	41	22	34.9206
ZNF253	0	genome.wustl.edu	37	19	20003500	20003500	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	20003500	20003500	G	A	SNP	ZNF253	ENST00000589717	human	ensembl	74_37	+1	known	missense	c.1444	p.V482M	0.361	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF253	HGNC	ENSG00000256771				102	0	0	59	6	9.23077
ZNF682	0	genome.wustl.edu	37	19	20117228	20117228	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	20117228	20117228	T	C	SNP	ZNF682	ENST00000397165	human	ensembl	74_37	-1	known	silent	c.1083	p.V361	0.976	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF682	HGNC	ENSG00000197124				74	0	0	55	6	9.83607
ZNF682	0	genome.wustl.edu	37	19	20117540	20117540	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	20117540	20117540	G	A	SNP	ZNF682	ENST00000397165	human	ensembl	74_37	-1	known	silent	c.771	p.Y257	0.737	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF682	HGNC	ENSG00000197124				76	0	0	63	6	8.69565
ZNF66	0	genome.wustl.edu	37	19	20975374	20975374	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	20975374	20975374	C	T	SNP	ZNF66	ENST00000344519	human	ensembl	74_37	+1	known	silent	c.60	p.C20	0.071	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF66	HGNC	ENSG00000160229				114	0	0	61	4	6.15385
AP3D1	0	genome.wustl.edu	37	19	2102260	2102260	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	2102260	2102260	T	C	SNP	AP3D1	ENST00000355272	human	ensembl	74_37	-1	known	missense	c.3560	p.N1187S	0.968	pfam_BLV_receptor	pfam_BLV_receptor,pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP3_complex_dsu	-	no_errors	AP3D1	HGNC	ENSG00000065000				132	0	0	125	8	6.01504
ZNF85	0	genome.wustl.edu	37	19	21131805	21131805	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	21131805	21131805	A	G	SNP	ZNF85	ENST00000328178	human	ensembl	74_37	+1	known	missense	c.485	p.N162S	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF85	HGNC	ENSG00000105750				121	0	0	76	8	9.52381
ZNF430	0	genome.wustl.edu	37	19	21240721	21240721	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	21240721	21240721	C	G	SNP	ZNF430	ENST00000261560	human	ensembl	74_37	+1	known	missense	c.1607	p.T536S	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF430	HGNC	ENSG00000118620				33	0	0	34	3	8.10811
AP3D1	0	genome.wustl.edu	37	19	2129320	2129320	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	2129320	2129320	C	T	SNP	AP3D1	ENST00000355272	human	ensembl	74_37	-1	known	silent	c.729	p.K243	0.972	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP3_complex_dsu	pfam_BLV_receptor,pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP3_complex_dsu	-	no_errors	AP3D1	HGNC	ENSG00000065000				36	0	0	38	4	9.52381
AP3D1	0	genome.wustl.edu	37	19	2129360	2129360	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	2129360	2129360	G	A	SNP	AP3D1	ENST00000355272	human	ensembl	74_37	-1	known	missense	c.689	p.T230M	1.000	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP3_complex_dsu	pfam_BLV_receptor,pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP3_complex_dsu	-	no_errors	AP3D1	HGNC	ENSG00000065000				50	0	0	52	5	8.77193
ZNF714	0	genome.wustl.edu	37	19	21300886	21300886	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	21300886	21300886	A	G	SNP	ZNF714	ENST00000596143	human	ensembl	74_37	+1	known	missense	c.1416	p.I472M	0.937	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF714	HGNC	ENSG00000160352				42	0	0	30	3	9.09091
ZNF708	0	genome.wustl.edu	37	19	21477270	21477270	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	21477270	21477270	A	T	SNP	ZNF708	ENST00000356929	human	ensembl	74_37	-1	known	missense	c.498	p.N166K	0.028	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF708	HGNC	ENSG00000182141				71	0	0	52	7	11.8644
ZNF493	0	genome.wustl.edu	37	19	21607090	21607090	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	21607090	21607090	A	C	SNP	ZNF493	ENST00000355504	human	ensembl	74_37	+1	known	missense	c.1245	p.K415N	0.929	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF493	HGNC	ENSG00000196268				50	0	0	28	4	12.5
ZNF429	0	genome.wustl.edu	37	19	21720176	21720176	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	21720176	21720176	A	G	SNP	ZNF429	ENST00000358491	human	ensembl	74_37	+1	novel	missense	c.1321	p.T441A	0.003	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF429	HGNC	ENSG00000197013				38	0	0	26	5	16.129
ZNF100	0	genome.wustl.edu	37	19	21909534	21909534	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	21909534	21909534	C	A	SNP	ZNF100	ENST00000358296	human	ensembl	74_37	-1	known	missense	c.1580	p.S527I	0.001	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF100	HGNC	ENSG00000197020				76	0	0	55	6	9.83607
ZNF100	0	genome.wustl.edu	37	19	21910359	21910359	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	21910359	21910359	C	T	SNP	ZNF100	ENST00000358296	human	ensembl	74_37	-1	known	missense	c.755	p.R252K	0.163	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF100	HGNC	ENSG00000197020				70	0	0	44	7	13.7255
ZNF43	0	genome.wustl.edu	37	19	21991813	21991813	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	21991813	21991813	G	A	SNP	ZNF43	ENST00000354959	human	ensembl	74_37	-1	known	silent	c.1026	p.Y342	0.001	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF43	HGNC	ENSG00000198521				70	0	0	57	4	6.55738
ZNF676	0	genome.wustl.edu	37	19	22364184	22364184	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	22364184	22364184	A	G	SNP	ZNF676	ENST00000397121	human	ensembl	74_37	-1	known	missense	c.335	p.V112A	0.072	NULL	pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF676	HGNC	ENSG00000196109				163	1	0.609756	115	13	10.1562
ZNF99	0	genome.wustl.edu	37	19	22941684	22941684	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	22941684	22941684	A	G	SNP	ZNF99	ENST00000397104	human	ensembl	74_37	-1	known	missense	c.754	p.C252R	0.887	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF99	HGNC	ENSG00000213973				81	0	0	51	6	10.5263
ZNF730	0	genome.wustl.edu	37	19	23316907	23316907	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	23316907	23316907	C	T	SNP	ZNF730	ENST00000597761	human	ensembl	74_37	+1	known	missense	c.29	p.A10V	0.095	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF730	HGNC	ENSG00000183850				75	0	0	39	10	20.4082
LMNB2	0	genome.wustl.edu	37	19	2435063	2435063	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	2435063	2435063	C	T	SNP	LMNB2	ENST00000325327	human	ensembl	74_37	-1	known	missense	c.791	p.R264Q	0.996	pfam_IF	pfam_IF,pfam_Lamin_tail_dom,superfamily_Prefoldin	-	no_errors	LMNB2	HGNC	ENSG00000176619				58	0	0	52	8	13.3333
GNG7	0	genome.wustl.edu	37	19	2515092	2515092	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	2515092	2515092	G	T	SNP	GNG7	ENST00000382159	human	ensembl	74_37	-1	known	missense	c.135	p.N45K	0.983	pfam_G-protein_gamma-like_dom,superfamily_G-protein_gamma-like_dom,smart_G-protein_gamma-like_dom,pfscan_G-protein_gamma-like_dom	pfam_G-protein_gamma-like_dom,superfamily_G-protein_gamma-like_dom,smart_G-protein_gamma-like_dom,pfscan_G-protein_gamma-like_dom,prints_Gprotein-gamma	-	no_errors	GNG7	HGNC	ENSG00000176533				110	0	0	93	9	8.82353
THOP1	0	genome.wustl.edu	37	19	2807736	2807736	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	2807736	2807736	C	T	SNP	THOP1	ENST00000307741	human	ensembl	74_37	+1	known	missense	c.1183	p.R395W	0.001	pfam_Pept_M3A_M3B	pfam_Pept_M3A_M3B	-	no_errors	THOP1	HGNC	ENSG00000172009				24	0	0	21	5	19.2308
TLE2	0	genome.wustl.edu	37	19	3005923	3005923	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	3005923	3005923	C	T	SNP	TLE2	ENST00000262953	human	ensembl	74_37	-1	known	missense	c.1544	p.G515D	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_Groucho/TLE_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_Groucho_enhance,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TLE2	HGNC	ENSG00000065717				66	0	0	70	7	9.09091
CCNE1	0	genome.wustl.edu	37	19	30308410	30308410	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	30308410	30308410	C	T	SNP	CCNE1	ENST00000262643	human	ensembl	74_37	+1	known	missense	c.424	p.P142S	1.000	pfam_Cyclin_N,superfamily_Cyclin-like,pirsf_Cyclin_A/B/D/E	pfam_Cyclin_N,pfam_Cyclin_C-dom,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_A/B/D/E	-	no_errors	CCNE1	HGNC	ENSG00000105173				207	0	0	167	16	8.74317
URI1	0	genome.wustl.edu	37	19	30503413	30503413	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	30503413	30503413	T	G	SNP	URI1	ENST00000542441	human	ensembl	74_37	+1	known	missense	c.1400	p.L467R	0.020	NULL	pfam_Prefoldin_subunit_alpha,superfamily_Prefoldin	-	no_errors	URI1	HGNC	ENSG00000105176				121	0	0	86	5	5.49451
ZNF536	0	genome.wustl.edu	37	19	31039501	31039501	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	31039501	31039501	T	C	SNP	ZNF536	ENST00000355537	human	ensembl	74_37	+1	known	missense	c.2975	p.V992A	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF536	HGNC	ENSG00000198597				104	0	0	74	16	17.7778
GNA15	0	genome.wustl.edu	37	19	3150136	3150136	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	3150136	3150136	C	T	SNP	GNA15	ENST00000262958	human	ensembl	74_37	+1	known	missense	c.338	p.A113V	0.982	pfam_Gprotein_alpha_su,superfamily_P-loop_NTPase,superfamily_GproteinA_insert,smart_Gprotein_alpha_su	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su,prints_Gprotein_alpha_Q	-	no_errors	GNA15	HGNC	ENSG00000060558				52	0	0	49	7	12.5
GNA15	0	genome.wustl.edu	37	19	3155864	3155864	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	3155864	3155864	A	T	SNP	GNA15	ENST00000262958	human	ensembl	74_37	+1	known	missense	c.658	p.I220F	1.000	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su,prints_Gprotein_alpha_Q	-	no_errors	GNA15	HGNC	ENSG00000060558				65	0	0	31	4	11.4286
TSHZ3	0	genome.wustl.edu	37	19	31769837	31769837	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	31769837	31769837	G	A	SNP	TSHZ3	ENST00000240587	human	ensembl	74_37	-1	known	nonsense	c.862	p.Q288*	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	TSHZ3	HGNC	ENSG00000121297				132	0	0	126	8	5.97015
TSHZ3	0	genome.wustl.edu	37	19	31769888	31769888	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	31769888	31769888	C	T	SNP	TSHZ3	ENST00000240587	human	ensembl	74_37	-1	known	missense	c.811	p.A271T	1.000	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	TSHZ3	HGNC	ENSG00000121297				162	0	0	153	23	13.0682
S1PR4	0	genome.wustl.edu	37	19	3179649	3179649	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	3179649	3179649	C	T	SNP	S1PR4	ENST00000246115	human	ensembl	74_37	+1	known	missense	c.859	p.R287W	0.956	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_EDG6_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_EDG6_rcpt,prints_S1P_rcpt,prints_GPCR_Rhodpsn	-	no_errors	S1PR4	HGNC	ENSG00000125910				116	0	0	92	21	18.5841
CELF5	0	genome.wustl.edu	37	19	3281228	3281228	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	3281228	3281228	C	T	SNP	CELF5	ENST00000292672	human	ensembl	74_37	+1	known	missense	c.635	p.A212V	0.995	pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CELF5	HGNC	ENSG00000161082				83	0	0	101	6	5.60748
ZNF507	0	genome.wustl.edu	37	19	32844939	32844939	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	32844939	32844939	A	G	SNP	ZNF507	ENST00000311921	human	ensembl	74_37	+1	known	silent	c.1203	p.R401	0.911	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF507	HGNC	ENSG00000168813				58	0	0	55	3	5.17241
ANKRD27	0	genome.wustl.edu	37	19	33117683	33117683	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	33117683	33117683	C	T	SNP	ANKRD27	ENST00000306065	human	ensembl	74_37	-1	known	missense	c.1471	p.A491T	0.999	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_VPS9,superfamily_Ankyrin_rpt-contain_dom,smart_VPS9_subgr,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_VPS9,prints_Ankyrin_rpt	-	no_errors	ANKRD27	HGNC	ENSG00000105186				17	0	0	18	3	14.2857
GPATCH1	0	genome.wustl.edu	37	19	33585162	33585162	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	33585162	33585162	C	T	SNP	GPATCH1	ENST00000170564	human	ensembl	74_37	+1	known	silent	c.540	p.R180	0.975	superfamily_C-type_lectin_fold	pfam_DUF1604,pfam_G_patch_dom,superfamily_C-type_lectin_fold,pfscan_G_patch_dom	-	no_errors	GPATCH1	HGNC	ENSG00000076650				137	0	0	86	8	8.51064
GPATCH1	0	genome.wustl.edu	37	19	33602641	33602641	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	33602641	33602641	C	T	SNP	GPATCH1	ENST00000170564	human	ensembl	74_37	+1	known	missense	c.1597	p.R533C	0.011	NULL	pfam_DUF1604,pfam_G_patch_dom,superfamily_C-type_lectin_fold,pfscan_G_patch_dom	-	no_errors	GPATCH1	HGNC	ENSG00000076650				120	0	0	129	7	5.14706
WDR88	0	genome.wustl.edu	37	19	33623191	33623191	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	33623191	33623191	C	T	SNP	WDR88	ENST00000355868	human	ensembl	74_37	+1	known	missense	c.116	p.A39V	0.000	NULL	pfam_WD40_repeat,pfam_PQQ_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,smart_PQQ_beta_propeller_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR88	HGNC	ENSG00000166359				75	0	0	61	20	24.6914
WDR88	0	genome.wustl.edu	37	19	33666372	33666372	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	33666372	33666372	T	C	SNP	WDR88	ENST00000355868	human	ensembl	74_37	+1	known	missense	c.1313	p.V438A	0.975	NULL	pfam_WD40_repeat,pfam_PQQ_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,smart_PQQ_beta_propeller_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR88	HGNC	ENSG00000166359				195	0	0	175	14	7.40741
KCTD15	0	genome.wustl.edu	37	19	34292139	34292139	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	34292139	34292139	T	C	SNP	KCTD15	ENST00000430256	human	ensembl	74_37	+1	known	missense	c.134	p.I45T	1.000	NULL	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	-	no_errors	KCTD15	HGNC	ENSG00000153885				68	0	0	71	7	8.97436
KCTD15	0	genome.wustl.edu	37	19	34302406	34302406	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	34302406	34302406	G	A	SNP	KCTD15	ENST00000430256	human	ensembl	74_37	+1	known	silent	c.642	p.T214	0.996	NULL	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	-	no_errors	KCTD15	HGNC	ENSG00000153885				42	0	0	22	4	15.3846
GPI	0	genome.wustl.edu	37	19	34887230	34887230	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	34887230	34887230	T	C	SNP	GPI	ENST00000415930	human	ensembl	74_37	+1	known	missense	c.1120	p.Y374H	1.000	pfam_G6P_Isomerase	pfam_G6P_Isomerase,prints_G6P_Isomerase	-	no_errors	GPI	HGNC	ENSG00000105220				81	0	0	95	10	9.52381
UBA2	0	genome.wustl.edu	37	19	34929585	34929585	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	34929585	34929585	G	A	SNP	UBA2	ENST00000246548	human	ensembl	74_37	+1	known	silent	c.495	p.P165	0.979	pfam_Ubiquitin-activating_enzyme,superfamily_Molybdenum_cofac_synth_MoeB	pfam_ThiF_NAD_FAD-bd,pfam_UBact_repeat,pfam_Ubiquitin-activating_enzyme,superfamily_Molybdenum_cofac_synth_MoeB	-	no_errors	UBA2	HGNC	ENSG00000126261				166	0	0	107	28	20.7407
UBA2	0	genome.wustl.edu	37	19	34935965	34935965	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	34935965	34935965	G	A	SNP	UBA2	ENST00000246548	human	ensembl	74_37	+1	known	missense	c.710	p.R237H	1.000	superfamily_Molybdenum_cofac_synth_MoeB	pfam_ThiF_NAD_FAD-bd,pfam_UBact_repeat,pfam_Ubiquitin-activating_enzyme,superfamily_Molybdenum_cofac_synth_MoeB	-	no_errors	UBA2	HGNC	ENSG00000126261				107	0	0	52	23	30.6667
MFSD12	0	genome.wustl.edu	37	19	3551131	3551131	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	3551131	3551131	C	T	SNP	MFSD12	ENST00000585814	human	ensembl	74_37	-1	known	missense	c.91	p.G31S	0.000	NULL	NULL	-	no_errors	MFSD12	HGNC	ENSG00000161091				28	0	0	17	3	15
GRAMD1A	0	genome.wustl.edu	37	19	35512908	35512908	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	35512908	35512908	G	T	SNP	GRAMD1A	ENST00000317991	human	ensembl	74_37	+1	known	missense	c.1807	p.G603C	0.989	NULL	pfam_GRAM,smart_GRAM	-	no_errors	GRAMD1A	HGNC	ENSG00000089351				52	0	0	51	10	16.3934
HPN	0	genome.wustl.edu	37	19	35556188	35556188	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	35556188	35556188	C	T	SNP	HPN	ENST00000262626	human	ensembl	74_37	+1	known	silent	c.846	p.G282	0.964	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,pfam_Hepsin-SRCR,superfamily_Trypsin-like_Pept_dom,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	HPN	HGNC	ENSG00000105707				64	0	0	56	4	6.66667
FAM187B	0	genome.wustl.edu	37	19	35719391	35719391	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	35719391	35719391	T	C	SNP	FAM187B	ENST00000324675	human	ensembl	74_37	-1	known	missense	c.193	p.S65G	0.000	NULL	NULL	-	no_errors	FAM187B	HGNC	ENSG00000177558				76	0	0	63	18	22.2222
ATP4A	0	genome.wustl.edu	37	19	36045887	36045887	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	36045887	36045887	G	A	SNP	ATP4A	ENST00000262623	human	ensembl	74_37	-1	known	silent	c.2418	p.T806	0.001	tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATPase_P-typ_H/K-transp_N,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP4A	HGNC	ENSG00000105675				72	0	0	59	11	15.7143
ATP4A	0	genome.wustl.edu	37	19	36046363	36046363	+	Silent	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	36046363	36046363	G	T	SNP	ATP4A	ENST00000262623	human	ensembl	74_37	-1	known	silent	c.2136	p.I712	0.844	pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATPase_P-typ_H/K-transp_N,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP4A	HGNC	ENSG00000105675				32	0	0	33	6	15.3846
HAUS5	0	genome.wustl.edu	37	19	36109909	36109909	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	36109909	36109909	A	G	SNP	HAUS5	ENST00000203166	human	ensembl	74_37	+1	known	silent	c.1137	p.L379	0.528	NULL	NULL	-	no_errors	HAUS5	HGNC	ENSG00000249115				42	0	0	36	6	14.2857
RBM42	0	genome.wustl.edu	37	19	36128350	36128350	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	36128350	36128350	A	T	SNP	RBM42	ENST00000262633	human	ensembl	74_37	+1	known	missense	c.1337	p.Y446F	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM42	HGNC	ENSG00000126254				49	0	0	49	6	10.9091
UPK1A	0	genome.wustl.edu	37	19	36157788	36157788	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	36157788	36157788	T	A	SNP	UPK1A	ENST00000379013	human	ensembl	74_37	+1	known	missense	c.74	p.I25N	1.000	pfam_Tetraspanin/Peripherin,prints_Tetraspanin	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	UPK1A	HGNC	ENSG00000105668				84	0	0	77	8	9.41176
UPK1A	0	genome.wustl.edu	37	19	36159405	36159405	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	36159405	36159405	A	G	SNP	UPK1A	ENST00000379013	human	ensembl	74_37	+1	known	missense	c.134	p.Q45R	1.000	pfam_Tetraspanin/Peripherin	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	UPK1A	HGNC	ENSG00000105668				48	0	0	53	3	5.35714
CACTIN	0	genome.wustl.edu	37	19	3620185	3620185	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	3620185	3620185	T	C	SNP	CACTIN	ENST00000221899	human	ensembl	74_37	-1	known	missense	c.620	p.E207G	1.000	pfam_Cactin_dom	pfam_Cactin_dom,pfam_Cactin_C	-	no_errors	CACTIN	HGNC	ENSG00000105298				26	0	0	16	9	36
KMT2B	0	genome.wustl.edu	37	19	36224532	36224532	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	36224532	36224532	C	T	SNP	KMT2B	ENST00000222270	human	ensembl	74_37	+1	known	missense	c.6994	p.R2332C	1.000	pirsf_MeTrfase_trithorax	pirsf_MeTrfase_trithorax,pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	KMT2B	Uniprot_gn	ENSG00000272333				12	0	0	6	3	33.3333
KMT2B	0	genome.wustl.edu	37	19	36229256	36229256	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	36229256	36229256	G	A	SNP	KMT2B	ENST00000222270	human	ensembl	74_37	+1	known	missense	c.7946	p.R2649H	1.000	pirsf_MeTrfase_trithorax,pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	pirsf_MeTrfase_trithorax,pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	KMT2B	Uniprot_gn	ENSG00000272333				33	0	0	20	3	13.0435
IGFLR1	0	genome.wustl.edu	37	19	36230664	36230664	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	36230664	36230664	A	G	SNP	IGFLR1	ENST00000246532	human	ensembl	74_37	-1	known	missense	c.668	p.L223P	0.000	NULL	superfamily_DEATH-like_dom	-	no_errors	IGFLR1	HGNC	ENSG00000126246				129	0	0	136	13	8.72483
NFKBID	0	genome.wustl.edu	37	19	36387924	36387924	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	36387924	36387924	G	A	SNP	NFKBID	ENST00000352614	human	ensembl	74_37	-1	known	missense	c.499	p.P167S	0.828	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	NFKBID	HGNC	ENSG00000167604				61	0	0	71	4	5.33333
LRFN3	0	genome.wustl.edu	37	19	36430758	36430758	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	36430758	36430758	C	T	SNP	LRFN3	ENST00000246529	human	ensembl	74_37	+1	known	missense	c.431	p.A144V	0.202	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	LRFN3	HGNC	ENSG00000126243				57	0	0	50	3	5.66038
PIP5K1C	0	genome.wustl.edu	37	19	3656486	3656486	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	3656486	3656486	T	C	SNP	PIP5K1C	ENST00000537021	human	ensembl	74_37	-1	known	missense	c.538	p.T180A	1.000	pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub	pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub	-	no_errors	PIP5K1C	HGNC	ENSG00000186111				86	0	0	101	7	6.48148
WDR62	0	genome.wustl.edu	37	19	36575648	36575648	+	Splice_Site	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	36575648	36575648	T	C	SNP	WDR62	ENST00000401500	human	ensembl	74_37	+1	known	splice_site	c.1642+2	e12+2	1.000	-	-	-	no_errors	WDR62	HGNC	ENSG00000075702				57	0	0	64	12	15.7895
WDR62	0	genome.wustl.edu	37	19	36593712	36593712	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	36593712	36593712	T	C	SNP	WDR62	ENST00000401500	human	ensembl	74_37	+1	known	silent	c.3294	p.S1098	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR62	HGNC	ENSG00000075702				40	0	0	40	3	6.97674
POLR2I	0	genome.wustl.edu	37	19	36604659	36604659	+	Nonstop_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	36604659	36604659	A	G	SNP	POLR2I	ENST00000221859	human	ensembl	74_37	-1	known	nonstop	c.376	p.*126R	1.000	NULL	pfam_DNA-dir_RNA_pol_M/15kDasu,pfam_Znf_TFIIS,smart_DNA-dir_RNA_pol_M/15kDasu,smart_Znf_TFIIS,pfscan_Znf_TFIIS	-	no_errors	POLR2I	HGNC	ENSG00000105258				28	0	0	24	5	17.2414
CAPNS1	0	genome.wustl.edu	37	19	36640666	36640666	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	36640666	36640666	T	C	SNP	CAPNS1	ENST00000587718	human	ensembl	74_37	+1	novel	missense	c.908	p.L303P	0.029	NULL	pfscan_EF_hand_dom	-	no_errors	CAPNS1	HGNC	ENSG00000126247				60	0	0	68	7	9.33333
COX7A1	0	genome.wustl.edu	37	19	36642422	36642422	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	36642422	36642422	C	T	SNP	COX7A1	ENST00000292907	human	ensembl	74_37	-1	known	silent	c.129	p.L43	1.000	pfam_Cyt_c_oxidase_su7a,superfamily_Cyt_c_oxidase_su7a	pfam_Cyt_c_oxidase_su7a,superfamily_Cyt_c_oxidase_su7a	-	no_errors	COX7A1	HGNC	ENSG00000161281				95	0	0	84	6	6.66667
ZFP82	0	genome.wustl.edu	37	19	36883908	36883908	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	36883908	36883908	A	T	SNP	ZFP82	ENST00000392161	human	ensembl	74_37	-1	known	missense	c.1334	p.I445N	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZFP82	HGNC	ENSG00000181007				106	0	0	73	4	5.19481
ZFP82	0	genome.wustl.edu	37	19	36884782	36884782	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	36884782	36884782	G	T	SNP	ZFP82	ENST00000392161	human	ensembl	74_37	-1	known	missense	c.460	p.R154S	0.017	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZFP82	HGNC	ENSG00000181007				114	0	0	96	6	5.88235
ZNF566	0	genome.wustl.edu	37	19	36939920	36939920	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	36939920	36939920	A	G	SNP	ZNF566	ENST00000392170	human	ensembl	74_37	-1	known	missense	c.1219	p.Y407H	0.010	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF566	HGNC	ENSG00000186017				53	0	0	46	3	6.12245
ZNF529	0	genome.wustl.edu	37	19	37037873	37037873	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	37037873	37037873	A	G	SNP	ZNF529	ENST00000591340	human	ensembl	74_37	-1	known	silent	c.1587	p.T529	0.994	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF529	HGNC	ENSG00000186020				92	0	0	58	14	19.4444
ZNF382	0	genome.wustl.edu	37	19	37100894	37100894	+	Silent	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	37100894	37100894	T	G	SNP	ZNF382	ENST00000292928	human	ensembl	74_37	+1	known	silent	c.78	p.P26	0.476	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF382	HGNC	ENSG00000161298				97	0	0	92	6	6.12245
ZNF382	0	genome.wustl.edu	37	19	37117166	37117166	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	37117166	37117166	C	A	SNP	ZNF382	ENST00000292928	human	ensembl	74_37	+1	known	missense	c.367	p.L123I	0.017	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF382	HGNC	ENSG00000161298				106	0	0	69	10	12.6582
TJP3	0	genome.wustl.edu	37	19	3733891	3733891	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	3733891	3733891	C	T	SNP	TJP3	ENST00000262968	human	ensembl	74_37	+1	known	silent	c.915	p.S305	0.863	NULL	pfam_PDZ,pfam_SH3_2,pfam_GK/Ca_channel_bsu,superfamily_PDZ,superfamily_P-loop_NTPase,superfamily_SH3_domain,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like,prints_ZonOcculS3,prints_ZonOcculdens	-	no_errors	TJP3	HGNC	ENSG00000105289				48	0	0	55	6	9.83607
ZNF568	0	genome.wustl.edu	37	19	37441575	37441575	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	37441575	37441575	G	A	SNP	ZNF568	ENST00000333987	human	ensembl	74_37	+1	known	missense	c.1520	p.C507Y	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF568	HGNC	ENSG00000198453				116	0	0	95	6	5.94059
ZNF569	0	genome.wustl.edu	37	19	37903927	37903927	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	37903927	37903927	T	C	SNP	ZNF569	ENST00000316950	human	ensembl	74_37	-1	known	missense	c.1633	p.T545A	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF569	HGNC	ENSG00000196437				132	0	0	73	10	12.0482
ZFP30	0	genome.wustl.edu	37	19	38127031	38127031	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	38127031	38127031	A	G	SNP	ZFP30	ENST00000351218	human	ensembl	74_37	-1	known	silent	c.411	p.P137	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZFP30	HGNC	ENSG00000120784				134	0	0	101	7	6.48148
ZFP30	0	genome.wustl.edu	37	19	38127206	38127206	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	38127206	38127206	T	A	SNP	ZFP30	ENST00000351218	human	ensembl	74_37	-1	known	missense	c.236	p.D79V	0.992	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZFP30	HGNC	ENSG00000120784				50	0	0	50	6	10.7143
ZNF607	0	genome.wustl.edu	37	19	38190323	38190323	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	38190323	38190323	A	G	SNP	ZNF607	ENST00000355202	human	ensembl	74_37	-1	known	missense	c.709	p.Y237H	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF607	HGNC	ENSG00000198182				65	0	0	57	4	6.55738
ZNF607	0	genome.wustl.edu	37	19	38190374	38190374	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	38190374	38190374	A	G	SNP	ZNF607	ENST00000355202	human	ensembl	74_37	-1	known	missense	c.658	p.Y220H	0.283	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF607	HGNC	ENSG00000198182				101	0	0	85	6	6.59341
ZNF607	0	genome.wustl.edu	37	19	38190740	38190740	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	38190740	38190740	G	A	SNP	ZNF607	ENST00000355202	human	ensembl	74_37	-1	known	missense	c.292	p.H98Y	0.265	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF607	HGNC	ENSG00000198182				129	0	0	85	6	6.59341
ZFR2	0	genome.wustl.edu	37	19	3834970	3834970	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	3834970	3834970	G	A	SNP	ZFR2	ENST00000262961	human	ensembl	74_37	-1	known	missense	c.65	p.P22L	0.031	NULL	pfam_DZF,smart_Znf_U1,smart_Znf_C2H2-like,smart_DZF	-	no_errors	ZFR2	HGNC	ENSG00000105278				18	0	0	18	8	30.7692
SIPA1L3	0	genome.wustl.edu	37	19	38655202	38655202	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	38655202	38655202	C	T	SNP	SIPA1L3	ENST00000222345	human	ensembl	74_37	+1	known	silent	c.3864	p.F1288	1.000	NULL	pfam_DUF3401,pfam_Rap_GAP_dom,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP_dom	-	no_errors	SIPA1L3	HGNC	ENSG00000105738				53	0	0	51	3	5.55556
GGN	0	genome.wustl.edu	37	19	38877100	38877100	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	38877100	38877100	G	A	SNP	GGN	ENST00000334928	human	ensembl	74_37	-1	known	silent	c.802	p.L268	0.565	NULL	NULL	-	no_errors	GGN	HGNC	ENSG00000179168				54	0	0	47	10	17.5439
RASGRP4	0	genome.wustl.edu	37	19	38910772	38910772	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	38910772	38910772	G	T	SNP	RASGRP4	ENST00000587738	human	ensembl	74_37	-1	known	missense	c.508	p.L170I	0.454	superfamily_Ras_GEF_dom,pfscan_Ras-like_Gua-exchang_fac_N	pfam_RasGRF_CDC25,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_EF_hand_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N,prints_DAG/PE-bd	-	no_errors	RASGRP4	HGNC	ENSG00000171777				41	0	0	39	6	13.3333
RASGRP4	0	genome.wustl.edu	37	19	38912707	38912707	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	38912707	38912707	C	T	SNP	RASGRP4	ENST00000587738	human	ensembl	74_37	-1	known	missense	c.110	p.R37Q	1.000	superfamily_Ras_GEF_dom	pfam_RasGRF_CDC25,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_EF_hand_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N,prints_DAG/PE-bd	-	no_errors	RASGRP4	HGNC	ENSG00000171777				35	0	0	31	4	11.4286
RYR1	0	genome.wustl.edu	37	19	38990633	38990633	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	38990633	38990633	G	A	SNP	RYR1	ENST00000359596	human	ensembl	74_37	+1	known	missense	c.7300	p.G2434R	1.000	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif	-	no_errors	RYR1	HGNC	ENSG00000196218				40	0	0	34	4	10.5263
RYR1	0	genome.wustl.edu	37	19	39028590	39028590	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	39028590	39028590	G	A	SNP	RYR1	ENST00000359596	human	ensembl	74_37	+1	known	silent	c.11679	p.G3893	0.391	pfam_RIH_assoc-dom	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif	-	no_errors	RYR1	HGNC	ENSG00000196218				82	0	0	67	8	10.6667
ACTN4	0	genome.wustl.edu	37	19	39207920	39207920	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	39207920	39207920	G	A	SNP	ACTN4	ENST00000252699	human	ensembl	74_37	+1	known	silent	c.1107	p.R369	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_EF-hand_Ca_insen,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	ACTN4	HGNC	ENSG00000130402				25	0	0	34	5	12.8205
PAPL	0	genome.wustl.edu	37	19	39597717	39597717	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	39597717	39597717	A	T	SNP	PAPL	ENST00000331256	human	ensembl	74_37	+1	known	missense	c.1244	p.D415V	0.982	NULL	pfam_PEstase_dom,superfamily_Purple_acid_Pase-like_N	-	no_errors	PAPL	Uniprot_gn	ENSG00000183760				41	0	0	36	4	10
PAK4	0	genome.wustl.edu	37	19	39669173	39669173	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	39669173	39669173	C	T	SNP	PAK4	ENST00000358301	human	ensembl	74_37	+1	known	missense	c.1730	p.P577L	0.999	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_CRIB_dom,superfamily_Kinase-like_dom,smart_CRIB_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRIB_dom,pfscan_Prot_kinase_dom	-	no_errors	PAK4	HGNC	ENSG00000130669				33	0	0	26	8	23.5294
IFNL3	0	genome.wustl.edu	37	19	39734787	39734787	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	39734787	39734787	C	T	SNP	IFNL3	ENST00000413851	human	ensembl	74_37	-1	known	missense	c.269	p.R90H	0.669	NULL	NULL	-	no_errors	IFNL3	HGNC	ENSG00000197110				37	0	0	44	7	13.7255
IFNL2	0	genome.wustl.edu	37	19	39760407	39760407	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	39760407	39760407	G	A	SNP	IFNL2	ENST00000331982	human	ensembl	74_37	+1	known	silent	c.450	p.R150	0.000	NULL	NULL	-	no_errors	IFNL2	HGNC	ENSG00000183709				56	0	0	55	4	6.77966
EEF2	0	genome.wustl.edu	37	19	3976577	3976577	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	3976577	3976577	A	G	SNP	EEF2	ENST00000309311	human	ensembl	74_37	-1	known	missense	c.2552	p.L851P	1.000	superfamily_EFG_III-V	pfam_EF_GTP-bd_dom,pfam_Transl_elong_EFG/EF2_IV,pfam_EFG_V,pfam_Transl_elong_EFTu/EF1A_2,superfamily_P-loop_NTPase,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_Transl_B-barrel,superfamily_EFG_III-V,smart_Transl_elong_EFG/EF2_IV,smart_EFG_V,prints_EF_GTP-bd_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	EEF2	HGNC	ENSG00000167658				15	0	0	14	2	12.5
EEF2	0	genome.wustl.edu	37	19	3976711	3976711	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	3976711	3976711	G	A	SNP	EEF2	ENST00000309311	human	ensembl	74_37	-1	known	silent	c.2418	p.G806	1.000	pfam_EFG_V,superfamily_EFG_III-V,smart_EFG_V	pfam_EF_GTP-bd_dom,pfam_Transl_elong_EFG/EF2_IV,pfam_EFG_V,pfam_Transl_elong_EFTu/EF1A_2,superfamily_P-loop_NTPase,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_Transl_B-barrel,superfamily_EFG_III-V,smart_Transl_elong_EFG/EF2_IV,smart_EFG_V,prints_EF_GTP-bd_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	EEF2	HGNC	ENSG00000167658				18	0	0	10	2	16.6667
LRFN1	0	genome.wustl.edu	37	19	39804819	39804819	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	39804819	39804819	G	A	SNP	LRFN1	ENST00000248668	human	ensembl	74_37	-1	known	silent	c.1158	p.C386	0.874	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	LRFN1	HGNC	ENSG00000128011				21	0	0	31	4	11.4286
MED29	0	genome.wustl.edu	37	19	39888188	39888188	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	39888188	39888188	A	C	SNP	MED29	ENST00000315588	human	ensembl	74_37	+1	known	missense	c.515	p.Q172P	1.000	pfam_Mediator_Med29_met	pfam_Mediator_Med29_met	-	no_errors	MED29	HGNC	ENSG00000063322				36	0	0	36	5	12.1951
PLEKHG2	0	genome.wustl.edu	37	19	39906037	39906037	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	39906037	39906037	G	A	SNP	PLEKHG2	ENST00000409794	human	ensembl	74_37	+1	known	missense	c.437	p.G146D	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG2	HGNC	ENSG00000090924				53	0	0	49	7	12.5
DLL3	0	genome.wustl.edu	37	19	39995888	39995888	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	39995888	39995888	A	T	SNP	DLL3	ENST00000205143	human	ensembl	74_37	+1	known	missense	c.890	p.E297V	1.000	pfam_EG-like_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	pfam_EG-like_dom,pfam_Notch_ligand_N,pfam_EGF_extracell,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	DLL3	HGNC	ENSG00000090932				55	0	0	46	6	11.5385
PIAS4	0	genome.wustl.edu	37	19	4013158	4013158	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	4013158	4013158	A	G	SNP	PIAS4	ENST00000262971	human	ensembl	74_37	+1	known	missense	c.265	p.T89A	0.007	NULL	pfam_Znf_MIZ,smart_SAP_dom,pfscan_Znf_MIZ,pfscan_SAP_dom	-	no_errors	PIAS4	HGNC	ENSG00000105229				77	0	0	78	9	10.3448
LGALS14	0	genome.wustl.edu	37	19	40197239	40197239	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	40197239	40197239	A	G	SNP	LGALS14	ENST00000360675	human	ensembl	74_37	+1	known	silent	c.105	p.V35	0.013	superfamily_ConA-like_lec_gl_sf,smart_Galectin_CRD	pfam_Galectin_CRD,superfamily_ConA-like_lec_gl_sf,smart_Galectin_CRD	-	no_errors	LGALS14	HGNC	ENSG00000006659				199	0	0	210	20	8.69565
CLC	0	genome.wustl.edu	37	19	40225044	40225044	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	40225044	40225044	C	T	SNP	CLC	ENST00000221804	human	ensembl	74_37	-1	known	missense	c.182	p.R61H	0.000	pfam_Galectin_CRD,superfamily_ConA-like_lec_gl_sf,smart_Galectin_CRD	pfam_Galectin_CRD,superfamily_ConA-like_lec_gl_sf,smart_Galectin_CRD	-	no_errors	CLC	HGNC	ENSG00000105205				163	0	0	136	12	8.10811
DYRK1B	0	genome.wustl.edu	37	19	40316660	40316660	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	40316660	40316660	G	T	SNP	DYRK1B	ENST00000323039	human	ensembl	74_37	-1	known	missense	c.1585	p.P529T	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	DYRK1B	HGNC	ENSG00000105204				42	0	0	49	6	10.9091
DYRK1B	0	genome.wustl.edu	37	19	40321416	40321416	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	40321416	40321416	G	C	SNP	DYRK1B	ENST00000323039	human	ensembl	74_37	-1	known	missense	c.71	p.P24R	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	DYRK1B	HGNC	ENSG00000105204				37	0	0	41	3	6.81818
DYRK1B	0	genome.wustl.edu	37	19	40321423	40321423	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	40321423	40321423	C	T	SNP	DYRK1B	ENST00000323039	human	ensembl	74_37	-1	known	missense	c.64	p.V22I	0.997	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	DYRK1B	HGNC	ENSG00000105204				37	0	0	38	4	9.52381
FCGBP	0	genome.wustl.edu	37	19	40362933	40362933	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	40362933	40362933	C	T	SNP	FCGBP	ENST00000221347	human	ensembl	74_37	-1	known	missense	c.15137	p.S5046N	0.026	pfam_Unchr_dom_Cys-rich,smart_Unchr_dom_Cys-rich	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EG-like_dom,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920				83	0	0	82	9	9.89011
FCGBP	0	genome.wustl.edu	37	19	40364395	40364395	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	40364395	40364395	A	G	SNP	FCGBP	ENST00000221347	human	ensembl	74_37	-1	known	silent	c.14247	p.G4749	0.000	pfam_TIL_dom,superfamily_TIL_dom	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EG-like_dom,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920				53	0	0	20	11	35.4839
PSMC4	0	genome.wustl.edu	37	19	40485987	40485987	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	40485987	40485987	G	A	SNP	PSMC4	ENST00000157812	human	ensembl	74_37	+1	known	silent	c.852	p.E284	0.998	pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-2,superfamily_P-loop_NTPase,smart_AAA+_ATPase,tigrfam_26S_Psome_P45	pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-2,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_P-loop_NTPase,smart_AAA+_ATPase,tigrfam_26S_Psome_P45	-	no_errors	PSMC4	HGNC	ENSG00000013275				58	0	0	47	9	16.0714
ZNF546	0	genome.wustl.edu	37	19	40521505	40521505	+	Silent	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	40521505	40521505	C	A	SNP	ZNF546	ENST00000347077	human	ensembl	74_37	+1	known	silent	c.2328	p.P776	0.972	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF546	HGNC	ENSG00000187187				58	0	0	44	4	8.33333
ZNF780A	0	genome.wustl.edu	37	19	40581085	40581085	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	40581085	40581085	A	G	SNP	ZNF780A	ENST00000455521	human	ensembl	74_37	-1	known	missense	c.1267	p.C423R	0.981	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF780A	HGNC	ENSG00000197782				237	0	0	203	18	8.1448
PLD3	0	genome.wustl.edu	37	19	40882661	40882661	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	40882661	40882661	A	G	SNP	PLD3	ENST00000356508	human	ensembl	74_37	+1	known	missense	c.1165	p.T389A	1.000	NULL	pfam_PLipase_D/transphosphatidylase,smart_PLipase_D/transphosphatidylase,pfscan_PLipase_D/transphosphatidylase	-	no_errors	PLD3	HGNC	ENSG00000105223				34	0	0	34	4	10.5263
MAP2K2	0	genome.wustl.edu	37	19	4099374	4099374	+	Silent	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	4099374	4099374	C	A	SNP	MAP2K2	ENST00000262948	human	ensembl	74_37	-1	known	silent	c.744	p.S248	0.606	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MAP2K2	HGNC	ENSG00000126934				14	0	0	11	4	26.6667
NUMBL	0	genome.wustl.edu	37	19	41183257	41183257	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	41183257	41183257	T	C	SNP	NUMBL	ENST00000252891	human	ensembl	74_37	-1	known	missense	c.610	p.K204E	1.000	smart_PTB/PI_dom,pirsf_Numb/numb-like	pfam_Numb_domain,pfam_PTB/PI_dom,pfam_PTB,smart_PTB/PI_dom,pirsf_Numb/numb-like,pfscan_PTB/PI_dom	-	no_errors	NUMBL	HGNC	ENSG00000105245				32	0	0	38	5	11.6279
CYP2A6	0	genome.wustl.edu	37	19	41355868	41355868	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	41355868	41355868	G	A	SNP	CYP2A6	ENST00000301141	human	ensembl	74_37	-1	known	silent	c.198	p.G66	0.454	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-I_CYP2A-like,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV	-	no_errors	CYP2A6	HGNC	ENSG00000255974				64	0	0	56	4	6.66667
CYP2B6	0	genome.wustl.edu	37	19	41518216	41518216	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	41518216	41518216	G	A	SNP	CYP2B6	ENST00000324071	human	ensembl	74_37	+1	known	silent	c.978	p.R326	0.952	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-I_CYP2B-like,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I_CYP2A-like	-	no_errors	CYP2B6	HGNC	ENSG00000197408				41	0	0	45	4	8.16327
CREB3L3	0	genome.wustl.edu	37	19	4157037	4157037	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	4157037	4157037	C	A	SNP	CREB3L3	ENST00000078445	human	ensembl	74_37	+1	known	missense	c.202	p.L68M	0.999	NULL	pfam_bZIP,superfamily_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	CREB3L3	HGNC	ENSG00000060566				53	0	0	53	7	11.6667
CYP2A13	0	genome.wustl.edu	37	19	41594537	41594537	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	41594537	41594537	T	A	SNP	CYP2A13	ENST00000330436	human	ensembl	74_37	+1	known	missense	c.161	p.M54K	0.882	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-I_CYP2A-like,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV	-	no_errors	CYP2A13	HGNC	ENSG00000197838				92	0	0	97	14	12.6126
CYP2S1	0	genome.wustl.edu	37	19	41704403	41704403	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	41704403	41704403	C	T	SNP	CYP2S1	ENST00000310054	human	ensembl	74_37	+1	known	missense	c.530	p.A177V	0.999	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-I_CYP2A-like,prints_Cyt_P450_E_grp-I_CYP2B-like,prints_Cyt_P450_B	-	no_errors	CYP2S1	HGNC	ENSG00000167600				132	0	0	104	12	10.3448
CCDC97	0	genome.wustl.edu	37	19	41825542	41825542	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	41825542	41825542	T	A	SNP	CCDC97	ENST00000269967	human	ensembl	74_37	+1	known	missense	c.566	p.I189N	0.997	pfam_DUF2052_coiled-coil	pfam_DUF2052_coiled-coil	-	no_errors	CCDC97	HGNC	ENSG00000142039				90	0	0	96	6	5.88235
TMEM91	0	genome.wustl.edu	37	19	41889623	41889623	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	41889623	41889623	A	G	SNP	TMEM91	ENST00000392002	human	ensembl	74_37	+1	known	missense	c.364	p.N122D	1.000	pfam_CD225/Dispanin_fam	pfam_CD225/Dispanin_fam	-	no_errors	TMEM91	HGNC	ENSG00000142046				89	0	0	72	8	10
B3GNT8	0	genome.wustl.edu	37	19	41931597	41931597	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	41931597	41931597	T	C	SNP	B3GNT8	ENST00000321702	human	ensembl	74_37	-1	known	missense	c.1087	p.T363A	0.171	NULL	pfam_Glyco_trans_31	-	no_errors	B3GNT8	HGNC	ENSG00000177191				61	0	0	72	8	10
ANKRD24	0	genome.wustl.edu	37	19	4216957	4216957	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	4216957	4216957	A	G	SNP	ANKRD24	ENST00000318934	human	ensembl	74_37	+1	known	silent	c.1800	p.K600	0.002	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD24	HGNC	ENSG00000089847				20	0	0	23	3	11.5385
CEACAM3	0	genome.wustl.edu	37	19	42301727	42301727	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	42301727	42301727	C	A	SNP	CEACAM3	ENST00000357396	human	ensembl	74_37	+1	known	missense	c.271	p.P91T	0.000	pfam_Ig_V-set	pfam_Ig_V-set	-	no_errors	CEACAM3	HGNC	ENSG00000170956				223	1	0.446429	188	12	6
EBI3	0	genome.wustl.edu	37	19	4234673	4234673	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	4234673	4234673	A	G	SNP	EBI3	ENST00000221847	human	ensembl	74_37	+1	known	missense	c.389	p.D130G	0.995	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	EBI3	HGNC	ENSG00000105246				125	0	0	125	10	7.40741
CD79A	0	genome.wustl.edu	37	19	42383300	42383300	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	42383300	42383300	G	A	SNP	CD79A	ENST00000221972	human	ensembl	74_37	+1	known	missense	c.320	p.R107Q	0.000	pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_Ig_I-set,pfam_Phos_immunorcpt_sig_ITAM,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Phos_immunorcpt_sig_ITAM,pfscan_Phos_immunorcpt_sig_ITAM,pfscan_Ig-like_dom	-	no_errors	CD79A	HGNC	ENSG00000105369				58	0	0	62	5	7.46269
CD79A	0	genome.wustl.edu	37	19	42383344	42383344	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	42383344	42383344	T	C	SNP	CD79A	ENST00000221972	human	ensembl	74_37	+1	known	missense	c.364	p.Y122H	1.000	smart_Ig_sub	pfam_Ig_V-set,pfam_Ig_I-set,pfam_Phos_immunorcpt_sig_ITAM,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Phos_immunorcpt_sig_ITAM,pfscan_Phos_immunorcpt_sig_ITAM,pfscan_Ig-like_dom	-	no_errors	CD79A	HGNC	ENSG00000105369				34	0	0	33	6	15.3846
ARHGEF1	0	genome.wustl.edu	37	19	42396773	42396773	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	42396773	42396773	A	G	SNP	ARHGEF1	ENST00000337665	human	ensembl	74_37	+1	known	missense	c.512	p.D171G	1.000	pfam_RGS-like_dom,superfamily_Regulat_G_prot_signal_superfam	pfam_RGS-like_dom,pfam_DH-domain,superfamily_Regulat_G_prot_signal_superfam,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF1	HGNC	ENSG00000076928				53	0	0	52	3	5.45455
GRIK5	0	genome.wustl.edu	37	19	42557982	42557982	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	42557982	42557982	G	A	SNP	GRIK5	ENST00000301218	human	ensembl	74_37	-1	known	missense	c.1156	p.R386C	1.000	superfamily_Peripla_BP_I	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK5	HGNC	ENSG00000105737				38	0	0	40	3	6.97674
ZNF574	0	genome.wustl.edu	37	19	42584439	42584439	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	42584439	42584439	A	G	SNP	ZNF574	ENST00000222339	human	ensembl	74_37	+1	known	missense	c.1951	p.T651A	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF574	HGNC	ENSG00000105732				78	0	0	85	6	6.59341
ERF	0	genome.wustl.edu	37	19	42753689	42753689	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	42753689	42753689	C	T	SNP	ERF	ENST00000222329	human	ensembl	74_37	-1	known	missense	c.575	p.G192D	1.000	NULL	pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	ERF	HGNC	ENSG00000105722				66	0	0	49	18	26.8657
TMEM145	0	genome.wustl.edu	37	19	42827839	42827839	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	42827839	42827839	T	C	SNP	TMEM145	ENST00000301204	human	ensembl	74_37	+1	known	silent	c.1299	p.A433	0.001	NULL	pfam_Intimal_thickness-rel_rcpt	-	no_errors	TMEM145	HGNC	ENSG00000167619				64	0	0	64	5	7.24638
MEGF8	0	genome.wustl.edu	37	19	42861608	42861608	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	42861608	42861608	G	A	SNP	MEGF8	ENST00000251268	human	ensembl	74_37	+1	known	missense	c.4883	p.R1628H	1.000	superfamily_Gal_Oxase/kelch_b-propeller	pfam_CUB_dom,pfam_EGF_laminin,pfam_Plexin_repeat,superfamily_Gal_Oxase/kelch_b-propeller,superfamily_CUB_dom,superfamily_Plexin-like_fold,smart_CUB_dom,smart_EG-like_dom,smart_Plexin-like_fold,smart_EGF-like_Ca-bd_dom,smart_EGF_laminin,pfscan_CUB_dom,pfscan_EG-like_dom,pfscan_EGF_laminin	-	no_errors	MEGF8	HGNC	ENSG00000105429				68	0	0	68	21	23.5955
LIPE	0	genome.wustl.edu	37	19	42911548	42911548	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	42911548	42911548	G	A	SNP	LIPE	ENST00000244289	human	ensembl	74_37	-1	known	nonsense	c.1915	p.Q639*	1.000	pfam_Steryl_acetyl_hydrolase	pfam_HSL_N,pfam_AB_hydrolase_3,pfam_Steryl_acetyl_hydrolase	-	no_errors	LIPE	HGNC	ENSG00000079435				52	0	0	43	10	18.8679
LIPE	0	genome.wustl.edu	37	19	42914696	42914696	+	Silent	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	42914696	42914696	C	A	SNP	LIPE	ENST00000244289	human	ensembl	74_37	-1	known	silent	c.1182	p.V394	1.000	pfam_HSL_N	pfam_HSL_N,pfam_AB_hydrolase_3,pfam_Steryl_acetyl_hydrolase	-	no_errors	LIPE	HGNC	ENSG00000079435				43	0	0	45	3	6.25
CEACAM1	0	genome.wustl.edu	37	19	43015763	43015763	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	43015763	43015763	T	C	SNP	CEACAM1	ENST00000161559	human	ensembl	74_37	-1	known	missense	c.1394	p.D465G	0.769	NULL	pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	CEACAM1	HGNC	ENSG00000079385				121	0	0	115	12	9.44882
PSG1	0	genome.wustl.edu	37	19	43382146	43382146	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	43382146	43382146	C	T	SNP	PSG1	ENST00000312439	human	ensembl	74_37	-1	known	missense	c.349	p.A117T	0.001	pfam_Ig_V-set,smart_Ig_sub	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	PSG1	HGNC	ENSG00000231924				354	1	0.28169	360	22	5.75916
PSG6	0	genome.wustl.edu	37	19	43420352	43420352	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	43420352	43420352	A	T	SNP	PSG6	ENST00000292125	human	ensembl	74_37	-1	known	missense	c.352	p.S118T	0.001	pfam_Ig_V-set,smart_Ig_sub	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	PSG6	HGNC	ENSG00000170848				340	0	0	332	37	10.0271
SH3GL1	0	genome.wustl.edu	37	19	4365591	4365591	+	Silent	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	4365591	4365591	C	A	SNP	SH3GL1	ENST00000269886	human	ensembl	74_37	-1	known	silent	c.219	p.T73	0.504	pfam_BAR_dom,smart_BAR_dom,pfscan_BAR_dom	pfam_BAR_dom,pfam_SH3_domain,pfam_BAR_dom-cont,pfam_SH3_2,superfamily_SH3_domain,smart_BAR_dom,smart_SH3_domain,pfscan_BAR_dom,pfscan_SH3_domain,prints_SH3_domain,prints_p67phox	-	no_errors	SH3GL1	HGNC	ENSG00000141985				97	0	0	89	7	7.29167
PSG5	0	genome.wustl.edu	37	19	43683057	43683057	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	43683057	43683057	C	T	SNP	PSG5	ENST00000599812	human	ensembl	74_37	-1	novel	missense	c.683	p.S228N	0.231	smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	PSG5	HGNC	ENSG00000204941				354	1	0.28169	332	19	5.41311
LYPD3	0	genome.wustl.edu	37	19	43968517	43968517	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	43968517	43968517	G	A	SNP	LYPD3	ENST00000244333	human	ensembl	74_37	-1	known	silent	c.171	p.G57	0.477	pfam_LY6_UPAR,smart_LY6_UPA_recep-like	pfam_LY6_UPAR,smart_LY6_UPA_recep-like	-	no_errors	LYPD3	HGNC	ENSG00000124466				26	0	0	24	9	27.2727
IRGQ	0	genome.wustl.edu	37	19	44096782	44096782	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	44096782	44096782	A	G	SNP	IRGQ	ENST00000422989	human	ensembl	74_37	-1	known	missense	c.1268	p.V423A	1.000	NULL	superfamily_P-loop_NTPase	-	no_errors	IRGQ	HGNC	ENSG00000167378				73	0	0	59	5	7.8125
KCNN4	0	genome.wustl.edu	37	19	44278390	44278390	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	44278390	44278390	G	T	SNP	KCNN4	ENST00000262888	human	ensembl	74_37	-1	known	missense	c.637	p.L213I	0.995	pfam_2pore_dom_K_chnl_dom	pfam_K_chnl_Ca-activ_SK,pfam_CaM-bd_dom,pfam_2pore_dom_K_chnl_dom,superfamily_CaM-bd_dom	-	no_errors	KCNN4	HGNC	ENSG00000104783				23	0	0	25	6	19.3548
ZNF283	0	genome.wustl.edu	37	19	44339699	44339699	+	Silent	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	44339699	44339699	C	A	SNP	ZNF283	ENST00000324461	human	ensembl	74_37	+1	known	silent	c.165	p.S55	0.025	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF283	HGNC	ENSG00000167637				29	0	0	22	7	24.1379
ZNF45	0	genome.wustl.edu	37	19	44418273	44418273	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	44418273	44418273	T	C	SNP	ZNF45	ENST00000269973	human	ensembl	74_37	-1	known	missense	c.1315	p.T439A	0.999	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF45	HGNC	ENSG00000124459				97	0	0	90	9	9.09091
ZNF223	0	genome.wustl.edu	37	19	44564934	44564934	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	44564934	44564934	T	C	SNP	ZNF223	ENST00000591793	human	ensembl	74_37	+1	known	missense	c.505	p.F169L	0.000	superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Krueppel-associated_box,pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF223	Uniprot_gn	ENSG00000267022				295	0	0	234	29	11.0266
ZNF227	0	genome.wustl.edu	37	19	44738911	44738911	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	44738911	44738911	T	A	SNP	ZNF227	ENST00000313040	human	ensembl	74_37	+1	known	missense	c.328	p.S110T	0.046	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF227	HGNC	ENSG00000131115				116	0	0	73	10	12.0482
ZNF227	0	genome.wustl.edu	37	19	44740625	44740625	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	44740625	44740625	G	A	SNP	ZNF227	ENST00000313040	human	ensembl	74_37	+1	known	missense	c.2042	p.G681D	0.900	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF227	HGNC	ENSG00000131115				85	0	0	73	9	10.9756
ZNF233	0	genome.wustl.edu	37	19	44777661	44777661	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	44777661	44777661	A	C	SNP	ZNF233	ENST00000391958	human	ensembl	74_37	+1	known	missense	c.848	p.D283A	0.366	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF233	HGNC	ENSG00000159915				81	0	0	63	4	5.97015
ZNF233	0	genome.wustl.edu	37	19	44778453	44778453	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	44778453	44778453	A	G	SNP	ZNF233	ENST00000391958	human	ensembl	74_37	+1	known	missense	c.1640	p.Q547R	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF233	HGNC	ENSG00000159915				103	0	0	89	5	5.31915
ZNF285	0	genome.wustl.edu	37	19	44890966	44890966	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	44890966	44890966	C	A	SNP	ZNF285	ENST00000330997	human	ensembl	74_37	-1	known	nonsense	c.1441	p.E481*	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF285	HGNC	ENSG00000267508				109	0	0	74	25	25.2525
ZNF285	0	genome.wustl.edu	37	19	44892260	44892260	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	44892260	44892260	G	A	SNP	ZNF285	ENST00000330997	human	ensembl	74_37	-1	known	silent	c.147	p.D49	0.000	smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF285	HGNC	ENSG00000267508				85	0	0	67	9	11.8421
HDGFRP2	0	genome.wustl.edu	37	19	4491791	4491791	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	4491791	4491791	C	T	SNP	HDGFRP2	ENST00000301284	human	ensembl	74_37	+1	known	missense	c.637	p.R213W	0.994	NULL	pfam_LEDGF,pfam_PWWP_dom,smart_PWWP_dom,pfscan_PWWP_dom	-	no_errors	HDGFRP2	Uniprot_gn	ENSG00000167674				103	0	0	80	22	21.5686
PLIN4	0	genome.wustl.edu	37	19	4504480	4504480	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	4504480	4504480	G	A	SNP	PLIN4	ENST00000301286	human	ensembl	74_37	-1	novel	silent	c.4065	p.G1355	0.000	NULL	pfam_Perilipin,superfamily_Ankyrin_rpt-contain_dom	-	no_errors	PLIN4	HGNC	ENSG00000167676				14	0	0	8	11	57.8947
PLIN4	0	genome.wustl.edu	37	19	4511181	4511181	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	4511181	4511181	C	T	SNP	PLIN4	ENST00000301286	human	ensembl	74_37	-1	novel	missense	c.2749	p.V917I	0.000	NULL	pfam_Perilipin,superfamily_Ankyrin_rpt-contain_dom	-	no_errors	PLIN4	HGNC	ENSG00000167676				86	0	0	60	28	31.8182
PLIN4	0	genome.wustl.edu	37	19	4511511	4511511	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	4511511	4511511	C	A	SNP	PLIN4	ENST00000301286	human	ensembl	74_37	-1	novel	missense	c.2419	p.A807S	0.003	NULL	pfam_Perilipin,superfamily_Ankyrin_rpt-contain_dom	-	no_errors	PLIN4	HGNC	ENSG00000167676				137	0	0	152	10	6.17284
PLIN4	0	genome.wustl.edu	37	19	4511907	4511907	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	4511907	4511907	C	A	SNP	PLIN4	ENST00000301286	human	ensembl	74_37	-1	novel	missense	c.2023	p.A675S	0.000	NULL	pfam_Perilipin,superfamily_Ankyrin_rpt-contain_dom	-	no_errors	PLIN4	HGNC	ENSG00000167676				189	1	0.526316	214	23	9.70464
CEACAM16	0	genome.wustl.edu	37	19	45209070	45209070	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	45209070	45209070	A	G	SNP	CEACAM16	ENST00000405314	human	ensembl	74_37	+1	known	missense	c.872	p.Y291C	1.000	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	CEACAM16	HGNC	ENSG00000213892				84	0	0	69	14	16.8675
PVRL2	0	genome.wustl.edu	37	19	45381765	45381765	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	45381765	45381765	A	G	SNP	PVRL2	ENST00000252485	human	ensembl	74_37	+1	known	missense	c.1328	p.E443G	0.983	NULL	pfam_CD80_C2-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	PVRL2	HGNC	ENSG00000130202				24	0	0	30	5	14.2857
PVRL2	0	genome.wustl.edu	37	19	45391415	45391415	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	45391415	45391415	C	T	SNP	PVRL2	ENST00000252483	human	ensembl	74_37	+1	known	missense	c.1396	p.P466S	0.933	NULL	pfam_CD80_C2-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	PVRL2	HGNC	ENSG00000130202				71	0	0	67	8	10.6667
APOC2	0	genome.wustl.edu	37	19	45452442	45452442	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	45452442	45452442	C	A	SNP	APOC2	ENST00000252490	human	ensembl	74_37	+1	known	missense	c.242	p.A81D	0.040	pfam_Apo-CII	pfam_Apo-CII	-	no_errors	APOC2	HGNC	ENSG00000234906				47	0	0	41	4	8.88889
CLPTM1	0	genome.wustl.edu	37	19	45477800	45477800	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	45477800	45477800	C	T	SNP	CLPTM1	ENST00000337392	human	ensembl	74_37	+1	known	silent	c.414	p.S138	0.614	pfam_CLPTM1	pfam_CLPTM1	-	no_errors	CLPTM1	HGNC	ENSG00000104853				67	0	0	60	13	17.8082
SEMA6B	0	genome.wustl.edu	37	19	4548328	4548328	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	4548328	4548328	C	T	SNP	SEMA6B	ENST00000301293	human	ensembl	74_37	-1	known	silent	c.1401	p.G467	0.000	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,pfscan_Semap_dom	-	no_errors	SEMA6B	HGNC	ENSG00000167680				51	0	0	43	6	12.2449
RELB	0	genome.wustl.edu	37	19	45540714	45540714	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	45540714	45540714	G	A	SNP	RELB	ENST00000221452	human	ensembl	74_37	+1	known	missense	c.1406	p.G469D	0.005	NULL	pfam_RHD,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT,pfscan_RHD,prints_NF_Rel_Dor	-	no_errors	RELB	HGNC	ENSG00000104856				118	0	0	123	17	12.1429
CLASRP	0	genome.wustl.edu	37	19	45573341	45573341	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	45573341	45573341	C	T	SNP	CLASRP	ENST00000221455	human	ensembl	74_37	+1	known	missense	c.1936	p.R646C	1.000	NULL	pfam_SWAP_N_domain	-	no_errors	CLASRP	HGNC	ENSG00000104859				60	0	0	63	8	11.2676
NKPD1	0	genome.wustl.edu	37	19	45656571	45656571	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	45656571	45656571	C	T	SNP	NKPD1	ENST00000317951	human	ensembl	74_37	-1	known	missense	c.1124	p.S375N	0.000	pfam_KAP_NTPase	pfam_KAP_NTPase	-	no_errors	NKPD1	HGNC	ENSG00000179846				11	0	0	6	3	33.3333
ERCC2	0	genome.wustl.edu	37	19	45860791	45860791	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	45860791	45860791	C	T	SNP	ERCC2	ENST00000391945	human	ensembl	74_37	-1	known	missense	c.1318	p.A440T	1.000	superfamily_P-loop_NTPase,tigrfam_DNA_helicase_DNA-repair_Rad3	pfam_DUF1227,pfam_DEAD_2,superfamily_P-loop_NTPase,smart_Helicase-like_DEXD_c2,smart_ATP-dep_Helicase_C,prints_XPGD_DNA_repair,pfscan_Helic_SF1/SF2_ATP-bd_DinG/Rad3,tigrfam_DNA_helicase_DNA-repair_Rad3	-	no_errors	ERCC2	HGNC	ENSG00000104884				47	0	0	43	9	17.3077
ERCC2	0	genome.wustl.edu	37	19	45867315	45867315	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	45867315	45867315	C	T	SNP	ERCC2	ENST00000391945	human	ensembl	74_37	-1	known	missense	c.878	p.R293Q	1.000	pfam_DUF1227,superfamily_P-loop_NTPase,tigrfam_DNA_helicase_DNA-repair_Rad3	pfam_DUF1227,pfam_DEAD_2,superfamily_P-loop_NTPase,smart_Helicase-like_DEXD_c2,smart_ATP-dep_Helicase_C,prints_XPGD_DNA_repair,pfscan_Helic_SF1/SF2_ATP-bd_DinG/Rad3,tigrfam_DNA_helicase_DNA-repair_Rad3	-	no_errors	ERCC2	HGNC	ENSG00000104884				8	0	0	10	3	23.0769
ERCC2	0	genome.wustl.edu	37	19	45873415	45873415	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	45873415	45873415	C	T	SNP	ERCC2	ENST00000391945	human	ensembl	74_37	-1	known	silent	c.81	p.E27	1.000	superfamily_P-loop_NTPase,smart_Helicase-like_DEXD_c2,pfscan_Helic_SF1/SF2_ATP-bd_DinG/Rad3,tigrfam_DNA_helicase_DNA-repair_Rad3	pfam_DUF1227,pfam_DEAD_2,superfamily_P-loop_NTPase,smart_Helicase-like_DEXD_c2,smart_ATP-dep_Helicase_C,prints_XPGD_DNA_repair,pfscan_Helic_SF1/SF2_ATP-bd_DinG/Rad3,tigrfam_DNA_helicase_DNA-repair_Rad3	-	no_errors	ERCC2	HGNC	ENSG00000104884				31	0	0	35	3	7.89474
CD3EAP	0	genome.wustl.edu	37	19	45912637	45912637	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	45912637	45912637	C	T	SNP	CD3EAP	ENST00000589804	human	ensembl	74_37	+1	known	missense	c.1417	p.R473W	0.000	NULL	pfam_DNA-dir_RNA_pol1_su_RPA34	-	no_errors	CD3EAP	HGNC	ENSG00000117877				69	0	0	45	12	21.0526
RTN2	0	genome.wustl.edu	37	19	45998181	45998181	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	45998181	45998181	C	A	SNP	RTN2	ENST00000245923	human	ensembl	74_37	-1	known	missense	c.162	p.Q54H	1.000	NULL	pfam_Reticulon,pfscan_Reticulon	-	no_errors	RTN2	HGNC	ENSG00000125744				44	0	0	48	6	11.1111
GPR4	0	genome.wustl.edu	37	19	46094232	46094232	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	46094232	46094232	G	A	SNP	GPR4	ENST00000323040	human	ensembl	74_37	-1	known	missense	c.893	p.A298V	1.000	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPR4_orph,prints_GPCR_Rhodpsn,prints_Psych_rcpt	-	no_errors	GPR4	HGNC	ENSG00000177464				72	0	0	67	6	8.21918
EML2	0	genome.wustl.edu	37	19	46136131	46136131	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	46136131	46136131	G	A	SNP	EML2	ENST00000586195	human	ensembl	74_37	-1	known	missense	c.218	p.A73V	1.000	NULL	NULL	-	no_errors	EML2	HGNC	ENSG00000125746				43	0	0	56	9	13.8462
SNRPD2	0	genome.wustl.edu	37	19	46191820	46191820	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	46191820	46191820	G	T	SNP	SNRPD2	ENST00000342669	human	ensembl	74_37	-1	known	missense	c.7	p.L3I	1.000	NULL	pfam_Ribonucl_LSM,superfamily_LSM_dom,smart_Ribonucl_LSM_euk/arc	-	no_errors	SNRPD2	HGNC	ENSG00000125743				142	0	0	120	12	9.09091
FBXO46	0	genome.wustl.edu	37	19	46216103	46216103	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	46216103	46216103	C	T	SNP	FBXO46	ENST00000317683	human	ensembl	74_37	-1	known	silent	c.651	p.R217	0.885	NULL	superfamily_F-box_dom,smart_F-box_dom,pfscan_F-box_dom	-	no_errors	FBXO46	HGNC	ENSG00000177051				37	0	0	42	5	10.6383
DMWD	0	genome.wustl.edu	37	19	46290090	46290090	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	46290090	46290090	G	A	SNP	DMWD	ENST00000270223	human	ensembl	74_37	-1	known	silent	c.664	p.L222	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMWD	HGNC	ENSG00000185800				36	0	0	35	4	10.2564
SYMPK	0	genome.wustl.edu	37	19	46351021	46351021	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	46351021	46351021	T	C	SNP	SYMPK	ENST00000245934	human	ensembl	74_37	-1	known	missense	c.665	p.Y222C	0.995	pfam_DUF3453,superfamily_ARM-type_fold	pfam_DUF3453,pfam_Symplekin_C,superfamily_ARM-type_fold	-	no_errors	SYMPK	HGNC	ENSG00000125755				53	0	0	49	4	7.54717
FOXA3	0	genome.wustl.edu	37	19	46375928	46375928	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	46375928	46375928	G	A	SNP	FOXA3	ENST00000302177	human	ensembl	74_37	+1	known	missense	c.665	p.G222E	0.921	NULL	pfam_TF_fork_head,pfam_Fork-head_N,pfam_Forkhead_box_C,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXA3	HGNC	ENSG00000170608				26	0	0	21	3	12.5
NANOS2	0	genome.wustl.edu	37	19	46417579	46417579	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	46417579	46417579	G	A	SNP	NANOS2	ENST00000341294	human	ensembl	74_37	-1	known	missense	c.373	p.R125C	1.000	NULL	pfam_Znf_nanos-typ	-	no_errors	NANOS2	HGNC	ENSG00000188425				26	0	0	24	4	14.2857
HIF3A	0	genome.wustl.edu	37	19	46807198	46807198	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	46807198	46807198	C	A	SNP	HIF3A	ENST00000377670	human	ensembl	74_37	+1	known	missense	c.70	p.R24S	0.999	superfamily_bHLH_dom,smart_bHLH_dom	pfam_PAS_fold_3,pfam_PAS_fold,pfam_HIF_alpha_subunit,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,smart_PAC,pfscan_PAS,tigrfam_PAS	-	no_errors	HIF3A	HGNC	ENSG00000124440				12	0	0	13	4	23.5294
HIF3A	0	genome.wustl.edu	37	19	46832527	46832527	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	46832527	46832527	C	T	SNP	HIF3A	ENST00000377670	human	ensembl	74_37	+1	known	missense	c.1504	p.L502F	1.000	pfam_HIF_alpha_subunit	pfam_PAS_fold_3,pfam_PAS_fold,pfam_HIF_alpha_subunit,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,smart_PAC,pfscan_PAS,tigrfam_PAS	-	no_errors	HIF3A	HGNC	ENSG00000124440				92	0	0	96	15	13.5135
PPP5C	0	genome.wustl.edu	37	19	46878978	46878978	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	46878978	46878978	G	A	SNP	PPP5C	ENST00000012443	human	ensembl	74_37	+1	known	missense	c.481	p.V161M	0.279	pfam_PPP_dom,pirsf_Ser/Thr_PPase_5	pfam_PEstase_dom,pfam_PPP_dom,pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,smart_Ser/Thr-sp_prot-phosphatase,pirsf_Ser/Thr_PPase_5,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Ser/Thr-sp_prot-phosphatase	-	no_errors	PPP5C	HGNC	ENSG00000011485				14	0	0	14	2	12.5
CCDC8	0	genome.wustl.edu	37	19	46914494	46914494	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	46914494	46914494	G	A	SNP	CCDC8	ENST00000307522	human	ensembl	74_37	-1	known	missense	c.1574	p.A525V	0.996	NULL	NULL	-	no_errors	CCDC8	HGNC	ENSG00000169515				64	0	0	67	5	6.94444
PNMAL2	0	genome.wustl.edu	37	19	46996841	46996841	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	46996841	46996841	G	A	SNP	PNMAL2	ENST00000599531	human	ensembl	74_37	-1	known	missense	c.1882	p.R628W	0.000	NULL	NULL	-	no_errors	PNMAL2	HGNC	ENSG00000204851				10	0	0	8	3	27.2727
DPP9	0	genome.wustl.edu	37	19	4705902	4705902	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	4705902	4705902	G	T	SNP	DPP9	ENST00000262960	human	ensembl	74_37	-1	known	missense	c.394	p.L132M	0.957	NULL	pfam_Peptidase_S9B,pfam_Peptidase_S9,pfam_X-Pro-like_dom	-	no_errors	DPP9	HGNC	ENSG00000142002				70	0	0	62	7	10.1449
SLC1A5	0	genome.wustl.edu	37	19	47280550	47280550	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	47280550	47280550	C	T	SNP	SLC1A5	ENST00000542575	human	ensembl	74_37	-1	known	missense	c.1171	p.A391T	1.000	pfam_Na-dicarboxylate_symporter,prints_Na-dicarboxylate_symporter	pfam_Na-dicarboxylate_symporter,prints_Na-dicarboxylate_symporter	-	no_errors	SLC1A5	HGNC	ENSG00000105281				43	0	0	33	5	13.1579
AP2S1	0	genome.wustl.edu	37	19	47341797	47341797	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	47341797	47341797	C	T	SNP	AP2S1	ENST00000263270	human	ensembl	74_37	-1	known	silent	c.336	p.T112	0.989	pfam_AP_mu_sigma_su,superfamily_Longin-like_dom,pirsf_AP_complex_ssu	pfam_AP_mu_sigma_su,superfamily_Longin-like_dom,pirsf_AP_complex_ssu	-	no_errors	AP2S1	HGNC	ENSG00000042753				45	0	0	40	6	13.0435
ARHGAP35	0	genome.wustl.edu	37	19	47424547	47424547	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	47424547	47424547	C	T	SNP	ARHGAP35	ENST00000404338	human	ensembl	74_37	+1	known	missense	c.2615	p.A872V	1.000	NULL	pfam_RhoGAP_dom,pfam_Small_GTPase,pfam_FF_domain,superfamily_Rho_GTPase_activation_prot,superfamily_P-loop_NTPase,superfamily_FF_domain,smart_FF_domain,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP35	HGNC	ENSG00000160007				181	0	0	132	17	11.4094
BBC3	0	genome.wustl.edu	37	19	47725161	47725161	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	47725161	47725161	C	T	SNP	BBC3	ENST00000449228	human	ensembl	74_37	-1	known	missense	c.583	p.A195T	1.000	NULL	NULL	-	no_errors	BBC3	HGNC	ENSG00000105327				48	0	0	44	5	10.2041
CCDC9	0	genome.wustl.edu	37	19	47774662	47774662	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	47774662	47774662	T	C	SNP	CCDC9	ENST00000221922	human	ensembl	74_37	+1	known	silent	c.1323	p.G441	0.000	NULL	NULL	-	no_errors	CCDC9	HGNC	ENSG00000105321				38	0	0	37	2	5.12821
NAPA	0	genome.wustl.edu	37	19	48006736	48006736	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	48006736	48006736	G	A	SNP	NAPA	ENST00000263354	human	ensembl	74_37	-1	known	missense	c.122	p.A41V	1.000	prints_NSF_attach	prints_NSF_attach	-	no_errors	NAPA	HGNC	ENSG00000105402				118	0	0	87	14	13.8614
EHD2	0	genome.wustl.edu	37	19	48239750	48239750	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	48239750	48239750	A	G	SNP	EHD2	ENST00000263277	human	ensembl	74_37	+1	known	missense	c.1040	p.H347R	1.000	NULL	pfam_Dynamin_GTPase,superfamily_P-loop_NTPase,smart_EPS15_homology,pfscan_EF_hand_dom,pfscan_EPS15_homology	-	no_errors	EHD2	HGNC	ENSG00000024422				111	0	0	71	22	23.6559
EHD2	0	genome.wustl.edu	37	19	48244520	48244520	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	48244520	48244520	G	A	SNP	EHD2	ENST00000263277	human	ensembl	74_37	+1	known	missense	c.1463	p.R488H	1.000	smart_EPS15_homology,pfscan_EF_hand_dom,pfscan_EPS15_homology	pfam_Dynamin_GTPase,superfamily_P-loop_NTPase,smart_EPS15_homology,pfscan_EF_hand_dom,pfscan_EPS15_homology	-	no_errors	EHD2	HGNC	ENSG00000024422				40	0	0	39	12	23.5294
ENSG00000269656	0	genome.wustl.edu	37	19	48260324	48260324	+	RNA	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	48260324	48260324	C	T	SNP	ENSG00000269656	ENST00000602048	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CTD-2571L23.6	Clone_based_vega_gene	ENSG00000269656				58	0	0	60	8	11.7647
ELSPBP1	0	genome.wustl.edu	37	19	48525436	48525436	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	48525436	48525436	C	T	SNP	ELSPBP1	ENST00000339841	human	ensembl	74_37	+1	known	missense	c.524	p.A175V	0.050	superfamily_Kringle-like,smart_FN_type2_col-bd	pfam_FN_type2_col-bd,superfamily_Kringle-like,smart_FN_type2_col-bd,pfscan_FN_type2_col-bd	-	no_errors	ELSPBP1	HGNC	ENSG00000169393				127	0	0	107	9	7.75862
LIG1	0	genome.wustl.edu	37	19	48624533	48624533	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	48624533	48624533	A	G	SNP	LIG1	ENST00000263274	human	ensembl	74_37	-1	known	missense	c.2279	p.V760A	1.000	superfamily_NA-bd_OB-fold,pfscan_DNA_ligase_ATP-dep_cent,tigrfam_DNA_ligase_ATP-dep	pfam_DNA_ligase_ATP-dep_cent,pfam_DNA_ligase_ATP-dep_N,pfam_DNA_ligase_ATP-dep_C,superfamily_DNA_ligase_ATP-dep_N,superfamily_NA-bd_OB-fold,pfscan_DNA_ligase_ATP-dep_cent,tigrfam_DNA_ligase_ATP-dep	-	no_errors	LIG1	HGNC	ENSG00000105486				34	0	0	49	9	15.5172
SULT2B1	0	genome.wustl.edu	37	19	49100124	49100124	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	49100124	49100124	G	A	SNP	SULT2B1	ENST00000201586	human	ensembl	74_37	+1	known	silent	c.774	p.T258	0.401	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	SULT2B1	HGNC	ENSG00000088002				19	0	0	22	4	15.3846
SPHK2	0	genome.wustl.edu	37	19	49132184	49132184	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	49132184	49132184	C	T	SNP	SPHK2	ENST00000443164	human	ensembl	74_37	+1	known	silent	c.1305	p.R435	0.003	NULL	pfam_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kinase_cat_dom	-	no_errors	SPHK2	HGNC	ENSG00000063176				57	0	0	58	8	12.1212
IZUMO1	0	genome.wustl.edu	37	19	49247440	49247440	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	49247440	49247440	T	C	SNP	IZUMO1	ENST00000332955	human	ensembl	74_37	-1	known	missense	c.410	p.N137S	1.000	NULL	NULL	-	no_errors	IZUMO1	HGNC	ENSG00000182264				221	0	0	203	22	9.77778
BCAT2	0	genome.wustl.edu	37	19	49310321	49310321	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	49310321	49310321	C	T	SNP	BCAT2	ENST00000316273	human	ensembl	74_37	-1	known	missense	c.35	p.R12Q	0.806	NULL	pfam_Aminotrans_IV,superfamily_Aminotrans_IV,pirsf_B_amino_transII,tigrfam_B_amino_transII	-	no_errors	BCAT2	HGNC	ENSG00000105552				37	0	0	41	4	8.88889
TULP2	0	genome.wustl.edu	37	19	49398379	49398379	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	49398379	49398379	C	T	SNP	TULP2	ENST00000221399	human	ensembl	74_37	-1	known	nonsense	c.390	p.W130*	0.000	NULL	pfam_Tubby_C,superfamily_Tubby_C-like,prints_Tubby_C,prints_Tubby_N	-	no_errors	TULP2	HGNC	ENSG00000104804				92	0	0	59	16	21.3333
KCNA7	0	genome.wustl.edu	37	19	49573589	49573589	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	49573589	49573589	T	C	SNP	KCNA7	ENST00000221444	human	ensembl	74_37	-1	known	missense	c.1102	p.T368A	1.000	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv1	-	no_errors	KCNA7	HGNC	ENSG00000104848				52	0	0	53	4	7.01754
CD37	0	genome.wustl.edu	37	19	49842077	49842077	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	49842077	49842077	T	A	SNP	CD37	ENST00000323906	human	ensembl	74_37	+1	known	missense	c.568	p.S190T	1.000	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	CD37	HGNC	ENSG00000104894				102	0	0	81	6	6.89655
TEAD2	0	genome.wustl.edu	37	19	49862738	49862738	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	49862738	49862738	G	A	SNP	TEAD2	ENST00000311227	human	ensembl	74_37	-1	known	missense	c.251	p.A84V	1.000	pfam_TEA/ATTS,smart_TEA/ATTS,pirsf_TEF,pfscan_TEA/ATTS,prints_TEA/ATTS	pfam_TEA/ATTS,smart_TEA/ATTS,pirsf_TEF,pfscan_TEA/ATTS,prints_TEA/ATTS	-	no_errors	TEAD2	HGNC	ENSG00000074219				200	0	0	187	14	6.96517
RCN3	0	genome.wustl.edu	37	19	50042431	50042431	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	50042431	50042431	A	T	SNP	RCN3	ENST00000270645	human	ensembl	74_37	+1	known	missense	c.674	p.Y225F	1.000	smart_EF_hand_dom,pfscan_EF_hand_dom	smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	RCN3	HGNC	ENSG00000142552				61	0	0	57	5	8.06452
PRR12	0	genome.wustl.edu	37	19	50098300	50098300	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	50098300	50098300	A	G	SNP	PRR12	ENST00000418929	human	ensembl	74_37	+1	novel	silent	c.708	p.P236	0.977	NULL	NULL	-	no_errors	PRR12	HGNC	ENSG00000126464				18	0	0	14	6	30
SCAF1	0	genome.wustl.edu	37	19	50154406	50154406	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	50154406	50154406	A	G	SNP	SCAF1	ENST00000360565	human	ensembl	74_37	+1	known	missense	c.760	p.T254A	1.000	NULL	NULL	-	no_errors	SCAF1	HGNC	ENSG00000126461				54	0	0	55	4	6.77966
CPT1C	0	genome.wustl.edu	37	19	50213650	50213650	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	50213650	50213650	C	A	SNP	CPT1C	ENST00000323446	human	ensembl	74_37	+1	known	missense	c.1640	p.P547Q	1.000	pfam_Carn_acyl_trans	pfam_Carn_acyl_trans	-	no_errors	CPT1C	HGNC	ENSG00000169169				93	0	0	94	6	6
AP2A1	0	genome.wustl.edu	37	19	50296315	50296315	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	50296315	50296315	C	T	SNP	AP2A1	ENST00000354293	human	ensembl	74_37	+1	known	missense	c.671	p.T224M	1.000	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP2_complex_asu	pfam_Clathrin/coatomer_adapt-like_N,pfam_Clathrin_a-adaptin_app_sub_C,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ARM-type_fold,superfamily_Coatomer/calthrin_app_sub_C,superfamily_Coatomer/clathrin_app_Ig-like,smart_Clathrin_a/b/g-adaptin_app_Ig,pirsf_AP2_complex_asu	-	no_errors	AP2A1	HGNC	ENSG00000196961				12	0	0	15	2	11.7647
KDM4B	0	genome.wustl.edu	37	19	5040024	5040024	+	Splice_Site	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	5040024	5040024	T	C	SNP	KDM4B	ENST00000159111	human	ensembl	74_37	+1	known	splice_site	c.317+2	e2+2	0.998	-	-	-	no_errors	KDM4B	HGNC	ENSG00000127663				27	0	0	24	5	17.2414
SIGLEC16	0	genome.wustl.edu	37	19	50475331	50475331	+	RNA	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	50475331	50475331	C	T	SNP	SIGLEC16	ENST00000602139	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SIGLEC16	HGNC	ENSG00000161643				46	0	0	47	5	9.61538
MYH14	0	genome.wustl.edu	37	19	50747562	50747562	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	50747562	50747562	A	G	SNP	MYH14	ENST00000262269	human	ensembl	74_37	+1	known	missense	c.1178	p.N393S	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH14	HGNC	ENSG00000105357				30	0	0	38	3	7.31707
NAPSA	0	genome.wustl.edu	37	19	50861982	50861982	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	50861982	50861982	G	T	SNP	NAPSA	ENST00000253719	human	ensembl	74_37	-1	known	missense	c.1091	p.P364H	1.000	pfam_Aspartic_peptidase,superfamily_Peptidase_aspartic_dom	pfam_Aspartic_peptidase,superfamily_Peptidase_aspartic_dom,prints_Aspartic_peptidase	-	no_errors	NAPSA	HGNC	ENSG00000131400				30	0	0	38	4	9.52381
NR1H2	0	genome.wustl.edu	37	19	50881803	50881803	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	50881803	50881803	G	A	SNP	NR1H2	ENST00000253727	human	ensembl	74_37	+1	known	missense	c.497	p.R166Q	1.000	superfamily_Nucl_hormone_rcpt_ligand-bd,prints_ThyrH_rcpt	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Liver_X_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Ecdystd_rcpt,prints_ThyrH_rcpt	-	no_errors	NR1H2	HGNC	ENSG00000131408				73	0	0	63	17	21.25
POLD1	0	genome.wustl.edu	37	19	50905974	50905974	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	50905974	50905974	G	A	SNP	POLD1	ENST00000440232	human	ensembl	74_37	+1	known	missense	c.946	p.D316N	1.000	pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B,tigrfam_DNA-dir_DNA_pol_B_pol2	-	no_errors	POLD1	HGNC	ENSG00000062822				30	0	0	29	4	12.1212
LRRC4B	0	genome.wustl.edu	37	19	51022237	51022237	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	51022237	51022237	G	A	SNP	LRRC4B	ENST00000389201	human	ensembl	74_37	-1	known	missense	c.733	p.R245C	1.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LRRC4B	HGNC	ENSG00000131409				23	0	0	24	5	17.2414
SHANK1	0	genome.wustl.edu	37	19	51189547	51189547	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	51189547	51189547	C	T	SNP	SHANK1	ENST00000391814	human	ensembl	74_37	-1	known	missense	c.2548	p.G850S	1.000	NULL	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_SH3_2,pfam_SAM_2,pfam_PDZ,pfam_SH3_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_PDZ,superfamily_SH3_domain,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SH3_domain,smart_PDZ,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PDZ,pfscan_SAM,pfscan_SH3_domain	-	no_errors	SHANK1	HGNC	ENSG00000161681				75	0	0	66	11	14.2857
SHANK1	0	genome.wustl.edu	37	19	51219729	51219729	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	51219729	51219729	G	A	SNP	SHANK1	ENST00000391814	human	ensembl	74_37	-1	known	missense	c.262	p.L88F	1.000	NULL	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_SH3_2,pfam_SAM_2,pfam_PDZ,pfam_SH3_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_PDZ,superfamily_SH3_domain,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SH3_domain,smart_PDZ,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PDZ,pfscan_SAM,pfscan_SH3_domain	-	no_errors	SHANK1	HGNC	ENSG00000161681				46	0	0	39	6	13.3333
ACPT	0	genome.wustl.edu	37	19	51297733	51297733	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	51297733	51297733	C	T	SNP	ACPT	ENST00000270594	human	ensembl	74_37	+1	known	missense	c.602	p.A201V	1.000	pfam_His_Pase_superF_clade-2	pfam_His_Pase_superF_clade-2	-	no_errors	ACPT	HGNC	ENSG00000142513				56	0	0	48	16	25
KLK15	0	genome.wustl.edu	37	19	51329891	51329891	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	51329891	51329891	C	T	SNP	KLK15	ENST00000598239	human	ensembl	74_37	-1	known	missense	c.604	p.A202T	0.993	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	KLK15	HGNC	ENSG00000174562				75	0	0	74	7	8.64198
KLK5	0	genome.wustl.edu	37	19	51452276	51452276	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	51452276	51452276	C	A	SNP	KLK5	ENST00000336334	human	ensembl	74_37	-1	known	missense	c.431	p.G144V	0.104	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	KLK5	HGNC	ENSG00000167754				81	0	0	74	5	6.32911
KLK6	0	genome.wustl.edu	37	19	51465041	51465041	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	51465041	51465041	A	C	SNP	KLK6	ENST00000310157	human	ensembl	74_37	-1	known	missense	c.541	p.L181V	0.997	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	KLK6	HGNC	ENSG00000167755				70	0	0	57	9	13.6364
KLK10	0	genome.wustl.edu	37	19	51518083	51518083	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	51518083	51518083	C	T	SNP	KLK10	ENST00000309958	human	ensembl	74_37	-1	known	nonsense	c.804	p.W268*	1.000	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	KLK10	HGNC	ENSG00000129451				119	1	0.833333	97	8	7.61905
CD33	0	genome.wustl.edu	37	19	51728581	51728581	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	51728581	51728581	T	C	SNP	CD33	ENST00000262262	human	ensembl	74_37	+1	known	missense	c.145	p.Y49H	0.000	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	CD33	HGNC	ENSG00000105383				133	0	0	149	8	5.09554
ETFB	0	genome.wustl.edu	37	19	51857744	51857744	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	51857744	51857744	T	A	SNP	ETFB	ENST00000354232	human	ensembl	74_37	-1	known	missense	c.149	p.D50V	0.001	NULL	pfam_ETF_a/b_N,smart_ETF_a/b_N	-	no_errors	ETFB	HGNC	ENSG00000105379				94	0	0	82	6	6.81818
NKG7	0	genome.wustl.edu	37	19	51875747	51875747	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	51875747	51875747	C	A	SNP	NKG7	ENST00000221978	human	ensembl	74_37	-1	known	missense	c.43	p.G15C	1.000	pfam_PMP22/EMP/MP20/Claudin	pfam_PMP22/EMP/MP20/Claudin	-	no_errors	NKG7	HGNC	ENSG00000105374				56	0	0	55	4	6.77966
PTPRS	0	genome.wustl.edu	37	19	5221144	5221144	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	5221144	5221144	C	T	SNP	PTPRS	ENST00000372412	human	ensembl	74_37	-1	known	missense	c.3325	p.G1109S	0.998	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom	-	no_errors	PTPRS	HGNC	ENSG00000105426				67	0	0	86	6	6.52174
HAS1	0	genome.wustl.edu	37	19	52216730	52216730	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	52216730	52216730	C	T	SNP	HAS1	ENST00000601714	human	ensembl	74_37	-1	known	missense	c.1708	p.V570M	1.000	NULL	pfam_Chitin_synth_fng,pfam_Glyco_trans_2	-	no_errors	HAS1	HGNC	ENSG00000105509				12	0	0	15	3	16.6667
HAS1	0	genome.wustl.edu	37	19	52219570	52219570	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	52219570	52219570	A	C	SNP	HAS1	ENST00000601714	human	ensembl	74_37	-1	known	missense	c.1021	p.C341G	1.000	pfam_Chitin_synth_fng	pfam_Chitin_synth_fng,pfam_Glyco_trans_2	-	no_errors	HAS1	HGNC	ENSG00000105509				84	0	0	79	6	7.05882
PTPRS	0	genome.wustl.edu	37	19	5225736	5225736	+	Splice_Site	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	5225736	5225736	A	G	SNP	PTPRS	ENST00000372412	human	ensembl	74_37	-1	known	splice_site	c.2497+2	e16+2	0.995	-	-	-	no_errors	PTPRS	HGNC	ENSG00000105426				47	0	0	40	4	9.09091
PTPRS	0	genome.wustl.edu	37	19	5225784	5225784	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	5225784	5225784	G	A	SNP	PTPRS	ENST00000372412	human	ensembl	74_37	-1	known	silent	c.2451	p.G817	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom	-	no_errors	PTPRS	HGNC	ENSG00000105426				40	0	0	31	3	8.82353
ZNF649	0	genome.wustl.edu	37	19	52399760	52399760	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	52399760	52399760	G	A	SNP	ZNF649	ENST00000354957	human	ensembl	74_37	-1	known	missense	c.203	p.T68I	0.004	smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF649	HGNC	ENSG00000198093				114	0	0	98	8	7.54717
ZNF613	0	genome.wustl.edu	37	19	52448122	52448122	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	52448122	52448122	C	G	SNP	ZNF613	ENST00000293471	human	ensembl	74_37	+1	known	missense	c.986	p.S329C	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF613	HGNC	ENSG00000176024				74	0	0	60	6	9.09091
ZNF613	0	genome.wustl.edu	37	19	52448840	52448840	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	52448840	52448840	T	C	SNP	ZNF613	ENST00000293471	human	ensembl	74_37	+1	known	silent	c.1704	p.S568	0.002	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF613	HGNC	ENSG00000176024				59	0	0	55	6	9.83607
ZNF615	0	genome.wustl.edu	37	19	52496490	52496490	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	52496490	52496490	T	C	SNP	ZNF615	ENST00000594083	human	ensembl	74_37	-1	known	missense	c.1872	p.I624M	0.002	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF615	HGNC	ENSG00000197619				164	0	0	113	7	5.83333
ZNF614	0	genome.wustl.edu	37	19	52520093	52520093	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	52520093	52520093	T	C	SNP	ZNF614	ENST00000270649	human	ensembl	74_37	-1	known	missense	c.758	p.N253S	0.062	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF614	HGNC	ENSG00000142556				108	0	0	93	10	9.70874
ZNF614	0	genome.wustl.edu	37	19	52521298	52521298	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	52521298	52521298	C	T	SNP	ZNF614	ENST00000270649	human	ensembl	74_37	-1	known	nonsense	c.201	p.W67*	0.002	smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF614	HGNC	ENSG00000142556				98	0	0	57	11	16.1765
ZNF616	0	genome.wustl.edu	37	19	52619658	52619658	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	52619658	52619658	A	T	SNP	ZNF616	ENST00000600228	human	ensembl	74_37	-1	known	missense	c.759	p.N253K	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF616	HGNC	ENSG00000204611				132	0	0	95	10	9.52381
ZNF836	0	genome.wustl.edu	37	19	52658789	52658789	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	52658789	52658789	G	T	SNP	ZNF836	ENST00000322146	human	ensembl	74_37	-1	known	missense	c.2147	p.P716H	0.962	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF836	HGNC	ENSG00000196267				110	0	0	62	7	10.1449
ZNF836	0	genome.wustl.edu	37	19	52659094	52659094	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	52659094	52659094	C	T	SNP	ZNF836	ENST00000322146	human	ensembl	74_37	-1	known	silent	c.1842	p.V614	0.124	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF836	HGNC	ENSG00000196267				214	0	0	203	17	7.72727
ZNF836	0	genome.wustl.edu	37	19	52659268	52659268	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	52659268	52659268	A	G	SNP	ZNF836	ENST00000322146	human	ensembl	74_37	-1	known	silent	c.1668	p.C556	0.162	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF836	HGNC	ENSG00000196267				310	0	0	240	26	9.77444
ZNF766	0	genome.wustl.edu	37	19	52785388	52785388	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	52785388	52785388	G	A	SNP	ZNF766	ENST00000359102	human	ensembl	74_37	+1	known	missense	c.88	p.A30T	0.999	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF766	HGNC	ENSG00000196214				277	0	0	180	55	23.4043
ZNF480	0	genome.wustl.edu	37	19	52825414	52825414	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	52825414	52825414	G	A	SNP	ZNF480	ENST00000468240	human	ensembl	74_37	+1	known	missense	c.911	p.R304Q	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF480	HGNC	ENSG00000198464				107	0	0	63	10	13.6986
ZNF808	0	genome.wustl.edu	37	19	53057596	53057596	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	53057596	53057596	T	C	SNP	ZNF808	ENST00000359798	human	ensembl	74_37	+1	known	missense	c.1427	p.I476T	0.931	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF808	HGNC	ENSG00000198482				109	0	0	86	6	6.52174
ZNF83	0	genome.wustl.edu	37	19	53117122	53117122	+	Silent	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	53117122	53117122	A	C	SNP	ZNF83	ENST00000301096	human	ensembl	74_37	-1	known	silent	c.696	p.P232	0.055	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF83	HGNC	ENSG00000167766				95	0	0	72	7	8.86076
ZNF600	0	genome.wustl.edu	37	19	53270810	53270810	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	53270810	53270810	T	A	SNP	ZNF600	ENST00000338230	human	ensembl	74_37	-1	known	missense	c.199	p.T67S	0.137	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF600	HGNC	ENSG00000189190				280	0	0	209	23	9.91379
ZNF28	0	genome.wustl.edu	37	19	53303561	53303561	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	53303561	53303561	G	A	SNP	ZNF28	ENST00000457749	human	ensembl	74_37	-1	known	missense	c.1537	p.H513Y	0.258	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF28	HGNC	ENSG00000198538				136	0	0	117	9	7.14286
ZNF320	0	genome.wustl.edu	37	19	53384506	53384506	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	53384506	53384506	A	T	SNP	ZNF320	ENST00000391781	human	ensembl	74_37	-1	known	missense	c.873	p.H291Q	0.491	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF320	HGNC	ENSG00000182986				128	0	0	106	12	10.1695
ZNF702P	0	genome.wustl.edu	37	19	53484155	53484155	+	RNA	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	53484155	53484155	G	A	SNP	ZNF702P	ENST00000270443	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.288	-	-	-	no_errors	ZNF702P	HGNC	ENSG00000242779				78	0	0	63	4	5.97015
ZNF160	0	genome.wustl.edu	37	19	53572543	53572543	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	53572543	53572543	T	C	SNP	ZNF160	ENST00000418871	human	ensembl	74_37	-1	known	missense	c.1244	p.H415R	0.836	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF160	HGNC	ENSG00000170949				180	0	0	135	12	8.16327
ZNF415	0	genome.wustl.edu	37	19	53612488	53612488	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	53612488	53612488	T	C	SNP	ZNF415	ENST00000448501	human	ensembl	74_37	-1	known	silent	c.954	p.K318	0.949	smart_Znf_BED_prd,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,smart_Znf_BED_prd,pfscan_Znf_C2H2	-	no_errors	ZNF415	HGNC	ENSG00000170954				92	0	0	45	9	16.6667
ZNF665	0	genome.wustl.edu	37	19	53669504	53669504	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	53669504	53669504	C	T	SNP	ZNF665	ENST00000396424	human	ensembl	74_37	-1	known	missense	c.239	p.S80N	0.000	pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF665	HGNC	ENSG00000197497				364	0	0	307	25	7.53012
ZNF845	0	genome.wustl.edu	37	19	53855495	53855495	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	53855495	53855495	T	C	SNP	ZNF845	ENST00000458035	human	ensembl	74_37	+1	known	missense	c.1567	p.Y523H	0.126	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF845	HGNC	ENSG00000213799				58	0	0	52	7	11.8644
ZNF525	0	genome.wustl.edu	37	19	53884297	53884297	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	53884297	53884297	G	A	SNP	ZNF525	ENST00000474037	human	ensembl	74_37	+1	putative	silent	c.465	p.Q155	0.003	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF525	HGNC	ENSG00000203326				166	0	0	93	32	25.6
DPRX	0	genome.wustl.edu	37	19	54139969	54139969	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	54139969	54139969	G	A	SNP	DPRX	ENST00000376650	human	ensembl	74_37	+1	known	silent	c.303	p.L101	0.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	DPRX	HGNC	ENSG00000204595				94	0	0	101	8	7.33945
PRKCG	0	genome.wustl.edu	37	19	54401279	54401279	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	54401279	54401279	C	T	SNP	PRKCG	ENST00000540413	human	ensembl	74_37	+1	known	missense	c.1006	p.R336C	1.000	pirsf_Protein_kinase_C_a/b/g	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_C2_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Protein_kinase_C_a/b/g,prints_DAG/PE-bd,prints_C2_dom,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom	-	no_errors	PRKCG	HGNC	ENSG00000126583				77	0	0	74	6	7.5
CACNG7	0	genome.wustl.edu	37	19	54444820	54444820	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	54444820	54444820	G	A	SNP	CACNG7	ENST00000222212	human	ensembl	74_37	+1	known	missense	c.521	p.R174H	1.000	pfam_PMP22/EMP/MP20/Claudin,prints_VDCC_gsu	pfam_PMP22/EMP/MP20/Claudin,prints_VDCC_g7su,prints_VDCC_gsu	-	no_errors	CACNG7	HGNC	ENSG00000105605				149	0	0	118	28	19.1781
ZNRF4	0	genome.wustl.edu	37	19	5455652	5455652	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	5455652	5455652	G	T	SNP	ZNRF4	ENST00000222033	human	ensembl	74_37	+1	known	missense	c.150	p.K50N	0.027	NULL	pfam_Protease-assoc_domain,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	ZNRF4	HGNC	ENSG00000105428				46	0	0	45	6	11.7647
NDUFA3	0	genome.wustl.edu	37	19	54610152	54610152	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	54610152	54610152	G	A	SNP	NDUFA3	ENST00000419113	human	ensembl	74_37	+1	known	silent	c.198	p.V66	0.965	NULL	NULL	-	no_errors	NDUFA3	HGNC	ENSG00000170906				33	0	0	36	3	7.69231
PRPF31	0	genome.wustl.edu	37	19	54627208	54627208	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	54627208	54627208	G	A	SNP	PRPF31	ENST00000321030	human	ensembl	74_37	+1	known	missense	c.608	p.R203H	1.000	pfam_Nop_dom	pfam_Nop_dom,pfam_Prp31_C,pfam_NOSIC,smart_NOSIC	-	no_errors	PRPF31	HGNC	ENSG00000105618				51	0	0	53	4	7.01754
RPS9	0	genome.wustl.edu	37	19	54710226	54710226	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	54710226	54710226	G	A	SNP	RPS9	ENST00000302907	human	ensembl	74_37	+1	known	silent	c.303	p.K101	1.000	pfam_Ribosomal_S4/S9_N,tigrfam_Ribosomal_S4/S9_euk/arc	pfam_Ribosomal_S4/S9_N,pfam_S4_RNA-bd,smart_S4_RNA-bd,pfscan_S4_RNA-bd,tigrfam_Ribosomal_S4/S9_euk/arc	-	no_errors	RPS9	HGNC	ENSG00000170889				53	0	0	36	6	14.2857
LILRB2	0	genome.wustl.edu	37	19	54780709	54780709	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	54780709	54780709	G	A	SNP	LILRB2	ENST00000391749	human	ensembl	74_37	-1	known	missense	c.1435	p.L479F	0.090	NULL	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LILRB2	HGNC	ENSG00000131042				117	0	0	105	6	5.40541
LENG8	0	genome.wustl.edu	37	19	54966185	54966185	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	54966185	54966185	T	C	SNP	LENG8	ENST00000326764	human	ensembl	74_37	+1	known	silent	c.735	p.V245	0.999	NULL	pfam_SAC3/GANP/Nin1/mts3/eIF-3-p25	-	no_errors	LENG8	HGNC	ENSG00000167615				42	0	0	41	4	8.88889
LENG8	0	genome.wustl.edu	37	19	54969365	54969365	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	54969365	54969365	T	C	SNP	LENG8	ENST00000326764	human	ensembl	74_37	+1	known	silent	c.1986	p.F662	0.997	pfam_SAC3/GANP/Nin1/mts3/eIF-3-p25	pfam_SAC3/GANP/Nin1/mts3/eIF-3-p25	-	no_errors	LENG8	HGNC	ENSG00000167615				75	0	0	61	8	11.5942
LENG8	0	genome.wustl.edu	37	19	54969555	54969555	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	54969555	54969555	G	A	SNP	LENG8	ENST00000326764	human	ensembl	74_37	+1	known	missense	c.2095	p.A699T	1.000	pfam_SAC3/GANP/Nin1/mts3/eIF-3-p25	pfam_SAC3/GANP/Nin1/mts3/eIF-3-p25	-	no_errors	LENG8	HGNC	ENSG00000167615				75	0	0	76	11	12.6437
LILRA1	0	genome.wustl.edu	37	19	55106363	55106363	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	55106363	55106363	A	G	SNP	LILRA1	ENST00000251372	human	ensembl	74_37	+1	known	missense	c.304	p.S102G	0.000	smart_Ig_sub,smart_Ig_sub2,pirsf_A1B_glyco/leuk_Ig-like_rcpt	smart_Ig_sub,smart_Ig_sub2,pirsf_A1B_glyco/leuk_Ig-like_rcpt,pfscan_Ig-like_dom	-	no_errors	LILRA1	HGNC	ENSG00000104974				95	0	0	90	8	8.16327
LILRA1	0	genome.wustl.edu	37	19	55107772	55107772	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	55107772	55107772	G	A	SNP	LILRA1	ENST00000251372	human	ensembl	74_37	+1	known	silent	c.1077	p.K359	0.022	smart_Ig_sub,smart_Ig_sub2,pirsf_A1B_glyco/leuk_Ig-like_rcpt	smart_Ig_sub,smart_Ig_sub2,pirsf_A1B_glyco/leuk_Ig-like_rcpt,pfscan_Ig-like_dom	-	no_errors	LILRA1	HGNC	ENSG00000104974				102	0	0	96	7	6.79612
KIR2DL1	0	genome.wustl.edu	37	19	55282338	55282338	+	Splice_Site	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	55282338	55282338	T	C	SNP	KIR2DL1	ENST00000336077	human	ensembl	74_37	+1	known	splice_site	c.70+2	e2+2	0.807	-	-	-	no_errors	KIR2DL1	HGNC	ENSG00000125498				250	0	0	229	68	22.8956
NLRP7	0	genome.wustl.edu	37	19	55445028	55445028	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	55445028	55445028	G	T	SNP	NLRP7	ENST00000446217	human	ensembl	74_37	-1	known	missense	c.2635	p.L879M	0.997	smart_Leu-rich_rpt_RNase_inh_sub-typ	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP7	HGNC	ENSG00000167634				100	1	0.990099	63	10	13.6986
GP6	0	genome.wustl.edu	37	19	55539169	55539169	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	55539169	55539169	G	A	SNP	GP6	ENST00000310373	human	ensembl	74_37	-1	known	silent	c.387	p.D129	0.001	smart_Ig_sub,smart_Ig_sub2	smart_Ig_sub,smart_Ig_sub2	-	no_errors	GP6	HGNC	ENSG00000088053				221	2	0.896861	204	18	8.10811
EPS8L1	0	genome.wustl.edu	37	19	55597335	55597335	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	55597335	55597335	A	G	SNP	EPS8L1	ENST00000201647	human	ensembl	74_37	+1	known	silent	c.1512	p.V504	0.002	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_PTB,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_SAM/pointed,smart_PTB/PI_dom,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	EPS8L1	HGNC	ENSG00000131037				35	0	0	47	4	7.84314
TNNT1	0	genome.wustl.edu	37	19	55644293	55644293	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	55644293	55644293	C	T	SNP	TNNT1	ENST00000588981	human	ensembl	74_37	-1	known	missense	c.827	p.R276H	1.000	NULL	pfam_Troponin	-	no_errors	TNNT1	HGNC	ENSG00000105048				21	0	0	11	5	31.25
SAFB2	0	genome.wustl.edu	37	19	5592843	5592843	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	5592843	5592843	G	A	SNP	SAFB2	ENST00000252542	human	ensembl	74_37	-1	known	missense	c.2263	p.R755C	0.998	NULL	pfam_RRM_dom,pfam_SAP_dom,smart_SAP_dom,smart_RRM_dom,pfscan_SAP_dom,pfscan_RRM_dom	-	no_errors	SAFB2	HGNC	ENSG00000130254				50	0	0	36	5	12.1951
ZNF579	0	genome.wustl.edu	37	19	56089958	56089958	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	56089958	56089958	C	T	SNP	ZNF579	ENST00000325421	human	ensembl	74_37	-1	known	missense	c.1048	p.E350K	0.166	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF579	HGNC	ENSG00000218891				11	0	0	9	5	35.7143
U2AF2	0	genome.wustl.edu	37	19	56166521	56166521	+	Splice_Site	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	56166521	56166521	T	C	SNP	U2AF2	ENST00000308924	human	ensembl	74_37	+1	known	splice_site	c.49+2	e1+2	0.962	-	-	-	no_errors	U2AF2	HGNC	ENSG00000063244				51	0	0	35	7	16.6667
EPN1	0	genome.wustl.edu	37	19	56203213	56203213	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	56203213	56203213	G	A	SNP	EPN1	ENST00000411543	human	ensembl	74_37	+1	known	missense	c.1114	p.V372I	0.000	NULL	pfam_Epsin_dom_N,pfam_ANTH_dom,superfamily_ENTH_VHS,smart_Epsin-like_N,smart_Ubiquitin-int_motif,pfscan_Epsin-like_N,pfscan_Ubiquitin-int_motif	-	no_errors	EPN1	HGNC	ENSG00000063245				50	0	0	61	6	8.95522
NLRP9	0	genome.wustl.edu	37	19	56243849	56243849	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	56243849	56243849	C	A	SNP	NLRP9	ENST00000332836	human	ensembl	74_37	-1	known	nonsense	c.1348	p.E450*	0.996	NULL	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP9	HGNC	ENSG00000185792				183	0	0	175	12	6.41711
NLRP4	0	genome.wustl.edu	37	19	56369592	56369592	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	56369592	56369592	C	T	SNP	NLRP4	ENST00000301295	human	ensembl	74_37	+1	known	missense	c.833	p.A278V	0.183	superfamily_P-loop_NTPase,pfscan_NACHT_NTPase	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP4	HGNC	ENSG00000160505				101	0	0	82	21	20.3883
NLRP4	0	genome.wustl.edu	37	19	56369735	56369735	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	56369735	56369735	A	G	SNP	NLRP4	ENST00000301295	human	ensembl	74_37	+1	known	missense	c.976	p.N326D	0.000	NULL	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP4	HGNC	ENSG00000160505				108	0	0	91	11	10.7843
NLRP4	0	genome.wustl.edu	37	19	56370579	56370579	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	56370579	56370579	A	G	SNP	NLRP4	ENST00000301295	human	ensembl	74_37	+1	known	missense	c.1820	p.Q607R	0.000	NULL	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP4	HGNC	ENSG00000160505				90	0	0	78	23	22.7723
NLRP13	0	genome.wustl.edu	37	19	56423337	56423337	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	56423337	56423337	A	C	SNP	NLRP13	ENST00000342929	human	ensembl	74_37	-1	known	missense	c.1846	p.L616V	0.000	NULL	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP13	HGNC	ENSG00000173572				83	0	0	65	4	5.7971
NLRP13	0	genome.wustl.edu	37	19	56443673	56443673	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	56443673	56443673	T	C	SNP	NLRP13	ENST00000342929	human	ensembl	74_37	-1	known	missense	c.5	p.N2S	0.002	pfscan_DAPIN	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP13	HGNC	ENSG00000173572				60	0	0	64	4	5.88235
NLRP5	0	genome.wustl.edu	37	19	56515301	56515301	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	56515301	56515301	C	T	SNP	NLRP5	ENST00000390649	human	ensembl	74_37	+1	known	silent	c.282	p.C94	0.000	pfam_DAPIN,superfamily_DEATH-like_dom,pfscan_DAPIN	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP5	HGNC	ENSG00000171487				91	0	0	66	5	7.04225
NLRP5	0	genome.wustl.edu	37	19	56539246	56539246	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	56539246	56539246	C	T	SNP	NLRP5	ENST00000390649	human	ensembl	74_37	+1	known	silent	c.1647	p.D549	0.010	NULL	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP5	HGNC	ENSG00000171487				28	0	0	26	9	25.7143
NLRP5	0	genome.wustl.edu	37	19	56565026	56565026	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	56565026	56565026	G	A	SNP	NLRP5	ENST00000390649	human	ensembl	74_37	+1	known	missense	c.3151	p.A1051T	0.000	smart_Leu-rich_rpt_RNase_inh_sub-typ	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP5	HGNC	ENSG00000171487				31	0	0	40	4	9.09091
ZSCAN5B	0	genome.wustl.edu	37	19	56701494	56701494	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	56701494	56701494	T	G	SNP	ZSCAN5B	ENST00000358992	human	ensembl	74_37	-1	known	missense	c.1190	p.D397A	0.230	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN5B	HGNC	ENSG00000197213				59	0	0	57	5	8.06452
ZSCAN5B	0	genome.wustl.edu	37	19	56702324	56702324	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	56702324	56702324	G	A	SNP	ZSCAN5B	ENST00000358992	human	ensembl	74_37	-1	known	silent	c.621	p.D207	0.000	NULL	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN5B	HGNC	ENSG00000197213				152	0	0	105	33	23.913
RPL36	0	genome.wustl.edu	37	19	5691598	5691598	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	5691598	5691598	C	T	SNP	RPL36	ENST00000347512	human	ensembl	74_37	+1	known	missense	c.284	p.A95V	0.935	pfam_Ribosomal_L36e	pfam_Ribosomal_L36e	-	no_errors	RPL36	HGNC	ENSG00000130255				30	0	0	22	3	12
ZNF667	0	genome.wustl.edu	37	19	56952773	56952773	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	56952773	56952773	T	C	SNP	ZNF667	ENST00000342634	human	ensembl	74_37	-1	known	missense	c.1975	p.T659A	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF667	HGNC	ENSG00000198046				79	0	0	61	6	8.95522
ZNF471	0	genome.wustl.edu	37	19	57036632	57036632	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	57036632	57036632	G	A	SNP	ZNF471	ENST00000308031	human	ensembl	74_37	+1	known	missense	c.1196	p.G399E	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF471	HGNC	ENSG00000196263				113	0	0	76	5	6.17284
ZNF470	0	genome.wustl.edu	37	19	57089759	57089759	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	57089759	57089759	T	C	SNP	ZNF470	ENST00000330619	human	ensembl	74_37	+1	known	silent	c.1962	p.C654	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF470	HGNC	ENSG00000197016				72	0	0	49	5	9.25926
ZNF71	0	genome.wustl.edu	37	19	57133693	57133693	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	57133693	57133693	C	T	SNP	ZNF71	ENST00000328070	human	ensembl	74_37	+1	known	silent	c.1038	p.R346	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF71	HGNC	ENSG00000197951				73	0	0	67	4	5.6338
ZNF835	0	genome.wustl.edu	37	19	57175250	57175250	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	57175250	57175250	C	T	SNP	ZNF835	ENST00000537055	human	ensembl	74_37	-1	known	silent	c.1317	p.T439	0.001	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF835	HGNC	ENSG00000127903				57	0	0	54	11	16.9231
ZNF835	0	genome.wustl.edu	37	19	57176405	57176405	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	57176405	57176405	G	A	SNP	ZNF835	ENST00000537055	human	ensembl	74_37	-1	known	silent	c.162	p.R54	0.002	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF835	HGNC	ENSG00000127903				53	0	0	48	6	11.1111
PEG3	0	genome.wustl.edu	37	19	57327048	57327048	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	57327048	57327048	T	G	SNP	PEG3	ENST00000326441	human	ensembl	74_37	-1	known	missense	c.2762	p.E921A	0.000	NULL	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	PEG3	HGNC	ENSG00000198300				153	0	0	160	15	8.57143
PEG3	0	genome.wustl.edu	37	19	57328459	57328459	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	57328459	57328459	G	A	SNP	PEG3	ENST00000326441	human	ensembl	74_37	-1	known	missense	c.1351	p.P451S	0.419	NULL	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	PEG3	HGNC	ENSG00000198300				162	0	0	143	12	7.74194
PEG3	0	genome.wustl.edu	37	19	57347438	57347438	+	RNA	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	57347438	57347438	G	A	SNP	PEG3	ENST00000594706	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.059	-	-	-	no_errors	PEG3	HGNC	ENSG00000198300				16	0	0	5	7	58.3333
USP29	0	genome.wustl.edu	37	19	57641113	57641113	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	57641113	57641113	T	C	SNP	USP29	ENST00000254181	human	ensembl	74_37	+1	known	missense	c.1070	p.V357A	0.967	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP29	HGNC	ENSG00000131864				116	0	0	102	8	7.27273
ZIM3	0	genome.wustl.edu	37	19	57647393	57647393	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	57647393	57647393	G	A	SNP	ZIM3	ENST00000269834	human	ensembl	74_37	-1	known	silent	c.312	p.V104	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZIM3	HGNC	ENSG00000141946				227	0	0	176	14	7.36842
ZNF543	0	genome.wustl.edu	37	19	57839292	57839292	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	57839292	57839292	T	C	SNP	ZNF543	ENST00000321545	human	ensembl	74_37	+1	known	silent	c.462	p.R154	0.001	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF543	HGNC	ENSG00000178229				94	0	0	93	12	11.4286
VN1R1	0	genome.wustl.edu	37	19	57967256	57967256	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	57967256	57967256	C	A	SNP	VN1R1	ENST00000321039	human	ensembl	74_37	-1	known	missense	c.599	p.S200I	0.000	pfam_Vmron_rcpt_1,pfam_TAS2_rcpt,pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_Vmron_rcpt_1,pfam_TAS2_rcpt,pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Vmron_rcpt_1	-	no_errors	VN1R1	HGNC	ENSG00000178201				88	0	0	53	14	20.8955
ZNF772	0	genome.wustl.edu	37	19	57984675	57984675	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	57984675	57984675	G	A	SNP	ZNF772	ENST00000343280	human	ensembl	74_37	-1	known	silent	c.1437	p.R479	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF772	HGNC	ENSG00000197128				52	0	0	41	4	8.88889
ZNF549	0	genome.wustl.edu	37	19	58049755	58049755	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	58049755	58049755	G	A	SNP	ZNF549	ENST00000376233	human	ensembl	74_37	+1	known	missense	c.1383	p.M461I	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF549	HGNC	ENSG00000121406				57	0	0	41	9	18
ZNF551	0	genome.wustl.edu	37	19	58196633	58196633	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	58196633	58196633	A	G	SNP	ZNF551	ENST00000282296	human	ensembl	74_37	+1	known	missense	c.85	p.M29V	0.027	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF551	HGNC	ENSG00000204519				141	0	0	100	26	20.6349
ZNF776	0	genome.wustl.edu	37	19	58264668	58264668	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	58264668	58264668	A	C	SNP	ZNF776	ENST00000317178	human	ensembl	74_37	+1	known	missense	c.170	p.Y57S	0.002	superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF776	HGNC	ENSG00000152443				172	0	0	149	15	9.14634
ZNF586	0	genome.wustl.edu	37	19	58290443	58290443	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	58290443	58290443	C	A	SNP	ZNF586	ENST00000396154	human	ensembl	74_37	+1	known	missense	c.488	p.S163Y	0.002	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF586	HGNC	ENSG00000083828				114	0	0	89	5	5.31915
ZNF552	0	genome.wustl.edu	37	19	58319610	58319610	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	58319610	58319610	A	T	SNP	ZNF552	ENST00000391701	human	ensembl	74_37	-1	known	missense	c.1022	p.V341D	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF552	HGNC	ENSG00000178935				112	0	0	88	9	9.27835
ZNF417	0	genome.wustl.edu	37	19	58420088	58420088	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	58420088	58420088	A	G	SNP	ZNF417	ENST00000312026	human	ensembl	74_37	-1	known	missense	c.1558	p.Y520H	0.170	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF417	HGNC	ENSG00000173480				141	0	0	107	12	10.084
ZNF418	0	genome.wustl.edu	37	19	58437734	58437734	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	58437734	58437734	C	T	SNP	ZNF418	ENST00000396147	human	ensembl	74_37	-1	known	silent	c.1815	p.A605	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF418	HGNC	ENSG00000196724				103	0	0	89	8	8.24742
ZNF418	0	genome.wustl.edu	37	19	58438155	58438155	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	58438155	58438155	C	T	SNP	ZNF418	ENST00000396147	human	ensembl	74_37	-1	known	missense	c.1394	p.G465D	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF418	HGNC	ENSG00000196724				207	0	0	167	12	6.70391
ZNF256	0	genome.wustl.edu	37	19	58453338	58453338	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	58453338	58453338	A	T	SNP	ZNF256	ENST00000282308	human	ensembl	74_37	-1	known	missense	c.838	p.S280T	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF256	HGNC	ENSG00000152454				137	0	0	113	14	11.0236
ZNF606	0	genome.wustl.edu	37	19	58490577	58490577	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	58490577	58490577	T	C	SNP	ZNF606	ENST00000341164	human	ensembl	74_37	-1	known	missense	c.1471	p.K491E	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF606	HGNC	ENSG00000166704				59	0	0	46	5	9.80392
ZNF135	0	genome.wustl.edu	37	19	58578557	58578557	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	58578557	58578557	G	A	SNP	ZNF135	ENST00000401053	human	ensembl	74_37	+1	known	silent	c.777	p.T259	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF135	HGNC	ENSG00000176293				114	0	0	102	8	7.27273
ZNF135	0	genome.wustl.edu	37	19	58579384	58579384	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	58579384	58579384	A	G	SNP	ZNF135	ENST00000401053	human	ensembl	74_37	+1	known	missense	c.1604	p.K535R	0.010	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF135	HGNC	ENSG00000176293				40	0	0	45	4	8.16327
ZSCAN18	0	genome.wustl.edu	37	19	58601478	58601478	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	58601478	58601478	G	A	SNP	ZSCAN18	ENST00000600404	human	ensembl	74_37	-1	known	missense	c.325	p.R109W	0.802	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,pfscan_Tscrpt_reg_SCAN	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN18	HGNC	ENSG00000121413				52	0	0	47	10	17.5439
ZNF329	0	genome.wustl.edu	37	19	58640601	58640601	+	Silent	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	58640601	58640601	A	C	SNP	ZNF329	ENST00000358067	human	ensembl	74_37	-1	known	silent	c.270	p.G90	0.019	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF329	HGNC	ENSG00000181894				159	0	0	129	11	7.85714
ZNF544	0	genome.wustl.edu	37	19	58773443	58773443	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	58773443	58773443	C	A	SNP	ZNF544	ENST00000269829	human	ensembl	74_37	+1	known	missense	c.1471	p.P491T	0.989	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF544	HGNC	ENSG00000198131				104	0	0	89	12	11.8812
ZNF8	0	genome.wustl.edu	37	19	58805954	58805954	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	58805954	58805954	T	C	SNP	ZNF8	ENST00000196548	human	ensembl	74_37	+1	known	silent	c.780	p.T260	0.011	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF8	Uniprot_gn	ENSG00000083842				72	0	0	48	8	14.2857
ZNF8	0	genome.wustl.edu	37	19	58806852	58806852	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	58806852	58806852	G	T	SNP	ZNF8	ENST00000196548	human	ensembl	74_37	+1	known	nonsense	c.1678	p.E560*	1.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF8	Uniprot_gn	ENSG00000083842				85	0	0	68	5	6.84932
ZNF584	0	genome.wustl.edu	37	19	58928251	58928251	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	58928251	58928251	G	T	SNP	ZNF584	ENST00000306910	human	ensembl	74_37	+1	known	missense	c.366	p.Q122H	0.001	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF584	HGNC	ENSG00000171574				63	0	0	37	11	22.9167
ZNF132	0	genome.wustl.edu	37	19	58946066	58946066	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	58946066	58946066	A	G	SNP	ZNF132	ENST00000254166	human	ensembl	74_37	-1	known	missense	c.745	p.S249P	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF132	HGNC	ENSG00000131849				165	0	0	119	12	9.16031
ZNF446	0	genome.wustl.edu	37	19	58988885	58988885	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	58988885	58988885	A	G	SNP	ZNF446	ENST00000594369	human	ensembl	74_37	+1	known	silent	c.300	p.L100	0.997	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,pfscan_Tscrpt_reg_SCAN	pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF446	HGNC	ENSG00000083838				54	0	0	46	10	17.8571
TRIM28	0	genome.wustl.edu	37	19	59061206	59061206	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	59061206	59061206	G	T	SNP	TRIM28	ENST00000253024	human	ensembl	74_37	+1	known	missense	c.2085	p.K695N	1.000	superfamily_Bromodomain	pfam_Znf_B-box,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_B-box,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	TRIM28	HGNC	ENSG00000130726				71	0	0	69	5	6.75676
MZF1	0	genome.wustl.edu	37	19	59074414	59074414	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	59074414	59074414	C	T	SNP	MZF1	ENST00000215057	human	ensembl	74_37	-1	known	silent	c.1230	p.R410	0.279	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	MZF1	HGNC	ENSG00000099326				29	0	0	36	2	5.26316
ACSBG2	0	genome.wustl.edu	37	19	6187702	6187702	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	6187702	6187702	C	T	SNP	ACSBG2	ENST00000252669	human	ensembl	74_37	+1	known	silent	c.1773	p.T591	0.004	NULL	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSBG2	HGNC	ENSG00000130377				47	0	0	66	4	5.71429
POLRMT	0	genome.wustl.edu	37	19	622628	622628	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	622628	622628	T	C	SNP	POLRMT	ENST00000588649	human	ensembl	74_37	-1	known	missense	c.1580	p.Q527R	0.143	NULL	pfam_DNA-dir_Rpol_phage-type	-	no_errors	POLRMT	HGNC	ENSG00000099821				22	0	0	15	2	11.7647
POLRMT	0	genome.wustl.edu	37	19	624774	624774	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	624774	624774	G	A	SNP	POLRMT	ENST00000588649	human	ensembl	74_37	-1	known	missense	c.1085	p.P362L	0.024	NULL	pfam_DNA-dir_Rpol_phage-type	-	no_errors	POLRMT	HGNC	ENSG00000099821				71	0	0	70	6	7.89474
KHSRP	0	genome.wustl.edu	37	19	6418522	6418522	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	6418522	6418522	C	T	SNP	KHSRP	ENST00000398148	human	ensembl	74_37	-1	known	missense	c.851	p.R284H	1.000	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	pfam_KH_dom_type_1,pfam_KH_dom_type_2,pfam_DUF1897,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	KHSRP	HGNC	ENSG00000088247				41	0	0	28	4	12.5
C3	0	genome.wustl.edu	37	19	6697697	6697697	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	6697697	6697697	A	C	SNP	C3	ENST00000245907	human	ensembl	74_37	-1	known	missense	c.2549	p.V850G	0.699	pfam_Macroglobln_a2	pfam_A2M_comp,pfam_A-macroglobulin_rcpt-bd,pfam_Macroglobln_a2,pfam_Netrin_module_non-TIMP,pfam_A2M_N_2,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_Anaphylatoxin/fibulin,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_TIMP-like_OB-fold,superfamily_A-macroglobulin_rcpt-bd,superfamily_Anaphylatoxin_comp_syst,smart_Anaphylatoxin/fibulin,smart_Netrin_module_non-TIMP,prints_Anaphylatoxn_comp_syst_dom,pfscan_Anaphylatoxin/fibulin,pfscan_Netrin_domain	-	no_errors	C3	HGNC	ENSG00000125730				36	0	0	45	3	6.25
C3	0	genome.wustl.edu	37	19	6710735	6710735	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	6710735	6710735	T	C	SNP	C3	ENST00000245907	human	ensembl	74_37	-1	known	missense	c.1601	p.Y534C	0.999	pfam_A2M_N_2	pfam_A2M_comp,pfam_A-macroglobulin_rcpt-bd,pfam_Macroglobln_a2,pfam_Netrin_module_non-TIMP,pfam_A2M_N_2,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_Anaphylatoxin/fibulin,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_TIMP-like_OB-fold,superfamily_A-macroglobulin_rcpt-bd,superfamily_Anaphylatoxin_comp_syst,smart_Anaphylatoxin/fibulin,smart_Netrin_module_non-TIMP,prints_Anaphylatoxn_comp_syst_dom,pfscan_Anaphylatoxin/fibulin,pfscan_Netrin_domain	-	no_errors	C3	HGNC	ENSG00000125730				76	0	0	70	7	9.09091
TRIP10	0	genome.wustl.edu	37	19	6750304	6750304	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	6750304	6750304	C	T	SNP	TRIP10	ENST00000313244	human	ensembl	74_37	+1	known	missense	c.1397	p.A466V	0.295	NULL	pfam_FCH_dom,pfam_SH3_domain,superfamily_SH3_domain,smart_FCH_dom,smart_SH3_domain,pfscan_FCH_dom,pfscan_SH3_domain	-	no_errors	TRIP10	HGNC	ENSG00000125733				84	0	0	71	4	5.33333
VAV1	0	genome.wustl.edu	37	19	6853059	6853059	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	6853059	6853059	G	A	SNP	VAV1	ENST00000602142	human	ensembl	74_37	+1	known	silent	c.2301	p.E767	0.998	superfamily_SH3_domain	pfam_DH-domain,pfam_SH3_domain,pfam_SH3_2,pfam_CAMSAP_CH,pfam_SH2,pfam_CH-domain,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_CH-domain,superfamily_SH3_domain,smart_CH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_SH3_domain,smart_SH2,pfscan_CH-domain,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain,prints_SH3_domain,prints_SH2,prints_SM22_calponin	-	no_errors	VAV1	HGNC	ENSG00000141968				63	0	0	54	5	8.47458
EMR1	0	genome.wustl.edu	37	19	6921803	6921803	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	6921803	6921803	G	A	SNP	EMR1	ENST00000312053	human	ensembl	74_37	+1	known	missense	c.1700	p.C567Y	0.993	pfam_GPS_dom,smart_GPS_dom,pfscan_GPS_dom,prints_GPCR_2_EMR1_rcpt	pfam_GPCR_2_secretin-like,pfam_EGF-like_Ca-bd_dom,pfam_GPS_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_EMR1_rcpt,prints_GPCR_2_secretin-like	-	no_errors	EMR1	HGNC	ENSG00000174837				114	0	0	98	14	12.5
EMR1	0	genome.wustl.edu	37	19	6937571	6937571	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	6937571	6937571	A	G	SNP	EMR1	ENST00000312053	human	ensembl	74_37	+1	known	missense	c.2567	p.K856R	0.235	NULL	pfam_GPCR_2_secretin-like,pfam_EGF-like_Ca-bd_dom,pfam_GPS_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_EMR1_rcpt,prints_GPCR_2_secretin-like	-	no_errors	EMR1	HGNC	ENSG00000174837				110	0	0	76	11	12.6437
ZNF557	0	genome.wustl.edu	37	19	7082971	7082971	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	7082971	7082971	A	T	SNP	ZNF557	ENST00000252840	human	ensembl	74_37	+1	known	missense	c.509	p.H170L	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF557	HGNC	ENSG00000130544				72	0	0	65	8	10.9589
INSR	0	genome.wustl.edu	37	19	7125522	7125522	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	7125522	7125522	C	T	SNP	INSR	ENST00000302850	human	ensembl	74_37	-1	known	silent	c.3030	p.V1010	1.000	pirsf_Tyr_kinase_insulin-like_rcpt,superfamily_Kinase-like_dom	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_dom,pfam_Furin-like_Cys-rich_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_Fibronectin_type3,smart_Furin_repeat,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom	-	no_errors	INSR	HGNC	ENSG00000171105				68	0	0	47	11	18.9655
INSR	0	genome.wustl.edu	37	19	7166350	7166350	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	7166350	7166350	A	G	SNP	INSR	ENST00000302850	human	ensembl	74_37	-1	known	missense	c.1676	p.V559A	1.000	pirsf_Tyr_kinase_insulin-like_rcpt,superfamily_Fibronectin_type3,smart_Fibronectin_type3	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_dom,pfam_Furin-like_Cys-rich_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_Fibronectin_type3,smart_Furin_repeat,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom	-	no_errors	INSR	HGNC	ENSG00000171105				44	0	0	40	9	18.3673
PALM	0	genome.wustl.edu	37	19	746583	746583	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	746583	746583	G	T	SNP	PALM	ENST00000338448	human	ensembl	74_37	+1	known	missense	c.933	p.E311D	0.996	pfam_Paralemmin	pfam_Paralemmin	-	no_errors	PALM	HGNC	ENSG00000099864				44	0	0	31	3	8.82353
PALM	0	genome.wustl.edu	37	19	746586	746586	+	Silent	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	746586	746586	C	A	SNP	PALM	ENST00000338448	human	ensembl	74_37	+1	known	silent	c.936	p.A312	0.003	pfam_Paralemmin	pfam_Paralemmin	-	no_errors	PALM	HGNC	ENSG00000099864				44	0	0	27	8	22.8571
ARHGEF18	0	genome.wustl.edu	37	19	7509264	7509264	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	7509264	7509264	G	A	SNP	ARHGEF18	ENST00000359920	human	ensembl	74_37	+1	known	missense	c.971	p.R324H	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF18	HGNC	ENSG00000104880				58	0	0	64	5	7.24638
C19orf45	0	genome.wustl.edu	37	19	7569089	7569089	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	7569089	7569089	A	G	SNP	C19orf45	ENST00000361664	human	ensembl	74_37	+1	known	silent	c.660	p.P220	0.959	NULL	NULL	-	no_errors	C19orf45	HGNC	ENSG00000198723				40	0	0	48	9	15.7895
MISP	0	genome.wustl.edu	37	19	757580	757580	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	757580	757580	C	T	SNP	MISP	ENST00000215582	human	ensembl	74_37	+1	known	missense	c.634	p.H212Y	0.000	NULL	NULL	-	no_errors	MISP	HGNC	ENSG00000099812				22	0	0	36	2	5.26316
MISP	0	genome.wustl.edu	37	19	758560	758560	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	758560	758560	G	A	SNP	MISP	ENST00000215582	human	ensembl	74_37	+1	known	silent	c.1614	p.L538	0.893	NULL	NULL	-	no_errors	MISP	HGNC	ENSG00000099812				55	0	0	49	16	24.6154
MCOLN1	0	genome.wustl.edu	37	19	7591654	7591654	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	7591654	7591654	C	T	SNP	MCOLN1	ENST00000264079	human	ensembl	74_37	+1	known	missense	c.413	p.A138V	0.003	NULL	pfam_PKD1_2_channel,superfamily_Glycoside_hydrolase_SF	-	no_errors	MCOLN1	HGNC	ENSG00000090674				37	0	0	33	9	21.4286
MCOLN1	0	genome.wustl.edu	37	19	7593720	7593720	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	7593720	7593720	T	C	SNP	MCOLN1	ENST00000264079	human	ensembl	74_37	+1	known	missense	c.998	p.F333S	1.000	NULL	pfam_PKD1_2_channel,superfamily_Glycoside_hydrolase_SF	-	no_errors	MCOLN1	HGNC	ENSG00000090674				33	0	0	30	3	9.09091
XAB2	0	genome.wustl.edu	37	19	7684649	7684649	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	7684649	7684649	C	A	SNP	XAB2	ENST00000358368	human	ensembl	74_37	-1	known	missense	c.2490	p.M830I	0.997	NULL	smart_HAT,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	XAB2	HGNC	ENSG00000076924				121	1	0.819672	160	12	6.97674
XAB2	0	genome.wustl.edu	37	19	7692152	7692152	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	7692152	7692152	G	A	SNP	XAB2	ENST00000358368	human	ensembl	74_37	-1	known	nonsense	c.499	p.R167*	1.000	NULL	smart_HAT,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	XAB2	HGNC	ENSG00000076924				43	0	0	27	10	27.027
PCP2	0	genome.wustl.edu	37	19	7696662	7696662	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	7696662	7696662	A	G	SNP	PCP2	ENST00000311069	human	ensembl	74_37	-1	known	silent	c.324	p.S108	0.995	NULL	pfam_GoLoco_motif,smart_GoLoco_motif,pfscan_GoLoco_motif	-	no_errors	PCP2	HGNC	ENSG00000174788				46	0	0	46	6	11.5385
CLEC4G	0	genome.wustl.edu	37	19	7794289	7794289	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	7794289	7794289	T	G	SNP	CLEC4G	ENST00000328853	human	ensembl	74_37	-1	known	missense	c.845	p.K282T	0.000	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,prints_AntifreezeII,pfscan_C-type_lectin	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,prints_AntifreezeII,pfscan_C-type_lectin	-	no_errors	CLEC4G	HGNC	ENSG00000182566				55	0	0	45	5	10
EVI5L	0	genome.wustl.edu	37	19	7914150	7914150	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	7914150	7914150	G	A	SNP	EVI5L	ENST00000538904	human	ensembl	74_37	+1	known	silent	c.561	p.S187	0.966	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	EVI5L	HGNC	ENSG00000142459				71	0	0	62	6	8.82353
MAP2K7	0	genome.wustl.edu	37	19	7975230	7975230	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	7975230	7975230	G	A	SNP	MAP2K7	ENST00000545011	human	ensembl	74_37	+1	known	missense	c.545	p.R182Q	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP2K7	HGNC	ENSG00000076984				24	0	0	22	2	8.33333
MAP2K7	0	genome.wustl.edu	37	19	7976042	7976042	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	7976042	7976042	G	A	SNP	MAP2K7	ENST00000545011	human	ensembl	74_37	+1	known	missense	c.979	p.A327T	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP2K7	HGNC	ENSG00000076984				28	0	0	27	4	12.9032
MAP2K7	0	genome.wustl.edu	37	19	7977189	7977189	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	7977189	7977189	G	T	SNP	MAP2K7	ENST00000545011	human	ensembl	74_37	+1	known	missense	c.1259	p.S420I	0.993	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP2K7	HGNC	ENSG00000076984				46	0	0	44	3	6.38298
SNAPC2	0	genome.wustl.edu	37	19	7987422	7987422	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	7987422	7987422	T	C	SNP	SNAPC2	ENST00000221573	human	ensembl	74_37	+1	known	missense	c.778	p.Y260H	0.099	pfam_SnAPC_su2-like	pfam_SnAPC_su2-like	-	no_errors	SNAPC2	HGNC	ENSG00000104976				59	0	0	55	14	20.2899
CCL25	0	genome.wustl.edu	37	19	8121288	8121288	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	8121288	8121288	A	T	SNP	CCL25	ENST00000390669	human	ensembl	74_37	+1	known	missense	c.230	p.N77I	0.976	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom	-	no_errors	CCL25	HGNC	ENSG00000131142				29	0	0	27	3	10
FBN3	0	genome.wustl.edu	37	19	8175763	8175763	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	8175763	8175763	G	A	SNP	FBN3	ENST00000270509	human	ensembl	74_37	-1	known	silent	c.4299	p.G1433	0.997	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pirsf_FBN,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd_dom,pfam_TB_dom,pfam_EG-like_dom,superfamily_TB_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pirsf_FBN,pfscan_EG-like_dom	-	no_errors	FBN3	HGNC	ENSG00000142449				103	0	0	92	17	15.5963
PRAM1	0	genome.wustl.edu	37	19	8563997	8563997	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	8563997	8563997	T	C	SNP	PRAM1	ENST00000423345	human	ensembl	74_37	-1	known	missense	c.695	p.Q232R	0.008	NULL	superfamily_SH3_domain	-	no_errors	PRAM1	HGNC	ENSG00000133246				45	0	0	42	8	16
MYO1F	0	genome.wustl.edu	37	19	8595214	8595214	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	8595214	8595214	G	A	SNP	MYO1F	ENST00000338257	human	ensembl	74_37	-1	known	missense	c.2194	p.R732C	0.579	pfam_Myosin_tail_2,superfamily_P-loop_NTPase	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,pfam_SH3_domain,pfam_SH3_2,superfamily_P-loop_NTPase,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_SH3_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_SH3_domain,prints_Myosin_head_motor_dom,prints_SH3_domain	-	no_errors	MYO1F	HGNC	ENSG00000142347				175	0	0	177	17	8.76289
ADAMTS10	0	genome.wustl.edu	37	19	8661991	8661991	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	8661991	8661991	G	A	SNP	ADAMTS10	ENST00000270328	human	ensembl	74_37	-1	known	missense	c.920	p.A307V	0.999	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS10	HGNC	ENSG00000142303				85	0	0	84	6	6.66667
MED16	0	genome.wustl.edu	37	19	886033	886033	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	886033	886033	G	T	SNP	MED16	ENST00000325464	human	ensembl	74_37	-1	known	missense	c.616	p.L206M	1.000	pfam_Mediator_Med16,superfamily_WD40_repeat_dom	pfam_Mediator_Med16,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	MED16	HGNC	ENSG00000175221				21	0	0	14	2	12.5
MBD3L1	0	genome.wustl.edu	37	19	8953661	8953661	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	8953661	8953661	G	A	SNP	MBD3L1	ENST00000305625	human	ensembl	74_37	+1	known	missense	c.307	p.G103R	0.002	NULL	NULL	-	no_errors	MBD3L1	HGNC	ENSG00000170948				78	0	0	81	10	10.989
MUC16	0	genome.wustl.edu	37	19	9003630	9003630	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	9003630	9003630	T	G	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.40010	p.E13337A	0.000	pfam_SEA_dom	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				194	0	0	178	15	7.77202
MUC16	0	genome.wustl.edu	37	19	9008180	9008180	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	9008180	9008180	G	A	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	silent	c.39372	p.Y13124	0.799	smart_SEA_dom	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				218	0	0	182	54	22.8814
MUC16	0	genome.wustl.edu	37	19	9014204	9014204	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	9014204	9014204	C	A	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.38444	p.G12815V	0.254	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				62	0	0	49	5	9.25926
MUC16	0	genome.wustl.edu	37	19	9024831	9024831	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	9024831	9024831	A	T	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.37031	p.V12344D	0.835	smart_SEA_dom	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				171	0	0	161	10	5.84795
MUC16	0	genome.wustl.edu	37	19	9046516	9046516	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	9046516	9046516	G	A	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	silent	c.35115	p.T11705	0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				141	0	0	133	14	9.52381
MUC16	0	genome.wustl.edu	37	19	9047431	9047431	+	Silent	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	9047431	9047431	T	A	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	silent	c.34200	p.V11400	0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				149	0	0	138	10	6.75676
MUC16	0	genome.wustl.edu	37	19	9068197	9068197	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	9068197	9068197	G	A	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.19249	p.P6417S	0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				153	0	0	131	9	6.42857
MUC16	0	genome.wustl.edu	37	19	9072001	9072001	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	9072001	9072001	T	C	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.15445	p.K5149E	0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				212	0	0	164	13	7.34463
MUC16	0	genome.wustl.edu	37	19	9076686	9076686	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	9076686	9076686	G	A	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.10760	p.A3587V	0.001	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				135	0	0	114	6	5
MUC16	0	genome.wustl.edu	37	19	9091505	9091505	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	9091505	9091505	A	G	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.310	p.S104P	0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				122	0	0	142	10	6.57895
MUC16	0	genome.wustl.edu	37	19	9091600	9091600	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	9091600	9091600	A	G	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.215	p.V72A	0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				92	0	0	89	22	19.8198
OR1M1	0	genome.wustl.edu	37	19	9204164	9204164	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	9204164	9204164	C	A	SNP	OR1M1	ENST00000429566	human	ensembl	74_37	+1	known	missense	c.244	p.L82M	0.849	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR1M1	HGNC	ENSG00000170929				65	0	0	48	5	9.43396
OR7G3	0	genome.wustl.edu	37	19	9236852	9236852	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	9236852	9236852	A	G	SNP	OR7G3	ENST00000305444	human	ensembl	74_37	-1	known	missense	c.775	p.Y259H	0.046	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR7G3	HGNC	ENSG00000170920				102	0	0	104	15	12.605
OR7D4	0	genome.wustl.edu	37	19	9325015	9325015	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	9325015	9325015	T	C	SNP	OR7D4	ENST00000308682	human	ensembl	74_37	-1	known	missense	c.499	p.T167A	0.577	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR7D4	HGNC	ENSG00000174667				78	0	0	74	6	7.5
ZNF560	0	genome.wustl.edu	37	19	9578698	9578698	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	9578698	9578698	C	T	SNP	ZNF560	ENST00000301480	human	ensembl	74_37	-1	known	missense	c.925	p.A309T	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF560	HGNC	ENSG00000198028				114	0	0	110	12	9.83607
ZNF121	0	genome.wustl.edu	37	19	9676744	9676744	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	9676744	9676744	A	C	SNP	ZNF121	ENST00000586602	human	ensembl	74_37	-1	known	missense	c.1045	p.F349V	0.069	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF121	HGNC	ENSG00000197961				76	0	0	44	10	18.5185
ARID3A	0	genome.wustl.edu	37	19	971952	971952	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	971952	971952	A	G	SNP	ARID3A	ENST00000263620	human	ensembl	74_37	+1	known	missense	c.1669	p.S557G	0.000	NULL	pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID3A	HGNC	ENSG00000116017				43	0	0	50	6	10.7143
ZNF562	0	genome.wustl.edu	37	19	9764064	9764064	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	9764064	9764064	G	A	SNP	ZNF562	ENST00000448622	human	ensembl	74_37	-1	known	missense	c.842	p.T281I	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF562	HGNC	ENSG00000171466				99	0	0	68	12	15
ZNF562	0	genome.wustl.edu	37	19	9764069	9764069	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	9764069	9764069	T	C	SNP	ZNF562	ENST00000448622	human	ensembl	74_37	-1	known	silent	c.837	p.A279	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF562	HGNC	ENSG00000171466				99	0	0	71	14	16.4706
ZNF562	0	genome.wustl.edu	37	19	9764070	9764070	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	9764070	9764070	G	A	SNP	ZNF562	ENST00000448622	human	ensembl	74_37	-1	known	missense	c.836	p.A279V	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF562	HGNC	ENSG00000171466				97	0	0	71	15	17.4419
ZNF846	0	genome.wustl.edu	37	19	9868340	9868340	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	9868340	9868340	C	T	SNP	ZNF846	ENST00000397902	human	ensembl	74_37	-1	known	silent	c.1413	p.T471	0.040	pfam_Znf_C2H2,smart_Znf_BED_prd,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,smart_Znf_BED_prd,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF846	HGNC	ENSG00000196605				93	0	0	65	14	17.7215
FBXL12	0	genome.wustl.edu	37	19	9921713	9921713	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	9921713	9921713	A	G	SNP	FBXL12	ENST00000247977	human	ensembl	74_37	-1	known	silent	c.840	p.T280	0.155	NULL	pfam_F-box_dom,superfamily_F-box_dom,smart_F-box_dom,pfscan_F-box_dom	-	no_errors	FBXL12	HGNC	ENSG00000127452				33	0	0	18	3	14.2857
FBXL12	0	genome.wustl.edu	37	19	9922090	9922090	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	9922090	9922090	A	G	SNP	FBXL12	ENST00000247977	human	ensembl	74_37	-1	known	missense	c.463	p.C155R	0.063	NULL	pfam_F-box_dom,superfamily_F-box_dom,smart_F-box_dom,pfscan_F-box_dom	-	no_errors	FBXL12	HGNC	ENSG00000127452				65	0	0	71	4	5.33333
PIN1	0	genome.wustl.edu	37	19	9949266	9949266	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	9949266	9949266	G	A	SNP	PIN1	ENST00000247970	human	ensembl	74_37	+1	known	silent	c.213	p.S71	0.577	pfam_PPIase_PpiC,pfscan_PPIase_PpiC	pfam_PPIase_PpiC,pfam_WW_dom,superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom,pfscan_PPIase_PpiC	-	no_errors	PIN1	HGNC	ENSG00000127445				8	0	0	10	3	23.0769
PIN1	0	genome.wustl.edu	37	19	9960268	9960268	+	RNA	SNP	G	G	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	9960268	9960268	G	C	SNP	PIN1	ENST00000380889	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.770	-	-	-	no_errors	PIN1	HGNC	ENSG00000127445				60	0	0	63	9	12.5
GRHL1	0	genome.wustl.edu	37	2	10095208	10095208	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	10095208	10095208	G	A	SNP	GRHL1	ENST00000324907	human	ensembl	74_37	+1	known	missense	c.185	p.G62D	1.000	NULL	pfam_CP2	-	no_errors	GRHL1	HGNC	ENSG00000134317				32	0	0	25	4	13.7931
GRHL1	0	genome.wustl.edu	37	2	10130832	10130832	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	10130832	10130832	G	A	SNP	GRHL1	ENST00000324907	human	ensembl	74_37	+1	known	silent	c.1278	p.E426	0.994	pfam_CP2	pfam_CP2	-	no_errors	GRHL1	HGNC	ENSG00000134317				27	0	0	17	5	22.7273
GRHL1	0	genome.wustl.edu	37	2	10130874	10130874	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	10130874	10130874	A	G	SNP	GRHL1	ENST00000324907	human	ensembl	74_37	+1	known	silent	c.1320	p.K440	1.000	pfam_CP2	pfam_CP2	-	no_errors	GRHL1	HGNC	ENSG00000134317				42	0	0	25	4	13.7931
NPAS2	0	genome.wustl.edu	37	2	101584868	101584868	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	101584868	101584868	G	A	SNP	NPAS2	ENST00000542504	human	ensembl	74_37	+1	known	missense	c.1228	p.V410M	1.000	pfam_PAS_fold_3,superfamily_PAS,smart_PAC	pfam_PAS_fold_3,pfam_PAS_fold,pfam_bHLH_dom,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,smart_PAC,prints_Nuc_translocat,pfscan_PAS,pfscan_bHLH_dom,tigrfam_PAS	-	no_errors	NPAS2	HGNC	ENSG00000170485				86	0	0	55	23	29.4872
TBC1D8	0	genome.wustl.edu	37	2	101656725	101656725	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	101656725	101656725	G	A	SNP	TBC1D8	ENST00000409318	human	ensembl	74_37	-1	known	missense	c.995	p.T332M	0.000	pfam_GRAM,smart_GRAM	pfam_Rab-GTPase-TBC_dom,pfam_GRAM,superfamily_Rab-GTPase-TBC_dom,smart_GRAM,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D8	HGNC	ENSG00000204634				62	0	0	67	4	5.6338
MAP4K4	0	genome.wustl.edu	37	2	102490623	102490623	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	102490623	102490623	T	A	SNP	MAP4K4	ENST00000324219	human	ensembl	74_37	+1	known	missense	c.2958	p.N986K	0.990	NULL	pfam_Prot_kinase_dom,pfam_Citron,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_dom	-	no_errors	MAP4K4	HGNC	ENSG00000071054				35	0	0	33	8	19.5122
IL1R1	0	genome.wustl.edu	37	2	102781461	102781461	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	102781461	102781461	G	A	SNP	IL1R1	ENST00000233946	human	ensembl	74_37	+1	known	missense	c.289	p.V97M	0.003	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom,prints_IL-1_rcpt_I/II-typ	pfam_TIR_dom,pfam_Ig_I-set,superfamily_TIR_dom,smart_Ig_sub,smart_TIR_dom,pfscan_TIR_dom,pfscan_Ig-like_dom,prints_IL-1_rcpt_I-typ,prints_IL-1_rcpt_I/II-typ	-	no_errors	IL1R1	HGNC	ENSG00000115594				73	0	0	63	4	5.97015
IL1RL2	0	genome.wustl.edu	37	2	102842390	102842390	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	102842390	102842390	C	A	SNP	IL1RL2	ENST00000264257	human	ensembl	74_37	+1	known	missense	c.1024	p.L342I	0.283	prints_IL-1_rcpt_I-typ	pfam_TIR_dom,superfamily_TIR_dom,smart_Ig_sub,smart_TIR_dom,pfscan_TIR_dom,pfscan_Ig-like_dom,prints_IL-1_rcpt_I/II-typ,prints_IL-1_rcpt_I-typ	-	no_errors	IL1RL2	HGNC	ENSG00000115598				41	0	0	25	7	21.875
IL1RL2	0	genome.wustl.edu	37	2	102851656	102851656	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	102851656	102851656	A	G	SNP	IL1RL2	ENST00000264257	human	ensembl	74_37	+1	known	missense	c.1597	p.R533G	0.995	pfam_TIR_dom,superfamily_TIR_dom,smart_TIR_dom,pfscan_TIR_dom	pfam_TIR_dom,superfamily_TIR_dom,smart_Ig_sub,smart_TIR_dom,pfscan_TIR_dom,pfscan_Ig-like_dom,prints_IL-1_rcpt_I/II-typ,prints_IL-1_rcpt_I-typ	-	no_errors	IL1RL2	HGNC	ENSG00000115598				84	0	0	69	5	6.75676
IL1RL1	0	genome.wustl.edu	37	2	102955465	102955465	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	102955465	102955465	C	T	SNP	IL1RL1	ENST00000233954	human	ensembl	74_37	+1	known	missense	c.230	p.A77V	0.151	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,prints_IL-1_rcpt_I/II-typ,pfscan_Ig-like_dom	pfam_TIR_dom,pfam_Ig_I-set,superfamily_TIR_dom,smart_Ig_sub,smart_Ig_sub2,smart_TIR_dom,prints_IL-1_rcpt_I/II-typ,pfscan_TIR_dom,pfscan_Ig-like_dom	-	no_errors	IL1RL1	HGNC	ENSG00000115602				222	0	0	187	10	5.07614
IL1RL1	0	genome.wustl.edu	37	2	102968241	102968241	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	102968241	102968241	A	G	SNP	IL1RL1	ENST00000233954	human	ensembl	74_37	+1	known	missense	c.1531	p.K511E	1.000	pfam_TIR_dom,superfamily_TIR_dom,smart_TIR_dom,pfscan_TIR_dom	pfam_TIR_dom,pfam_Ig_I-set,superfamily_TIR_dom,smart_Ig_sub,smart_Ig_sub2,smart_TIR_dom,prints_IL-1_rcpt_I/II-typ,pfscan_TIR_dom,pfscan_Ig-like_dom	-	no_errors	IL1RL1	HGNC	ENSG00000115602				53	0	0	47	4	7.84314
IL18R1	0	genome.wustl.edu	37	2	103010928	103010928	+	Splice_Site	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	103010928	103010928	G	A	SNP	IL18R1	ENST00000233957	human	ensembl	74_37	+1	known	splice_site	c.1112-1	e9-1	1.000	-	-	-	no_errors	IL18R1	HGNC	ENSG00000115604				84	0	0	60	4	6.25
IL18RAP	0	genome.wustl.edu	37	2	103040692	103040692	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	103040692	103040692	A	C	SNP	IL18RAP	ENST00000264260	human	ensembl	74_37	+1	known	missense	c.397	p.S133R	0.722	NULL	pfam_TIR_dom,superfamily_TIR_dom,smart_Ig_sub,smart_TIR_dom,pfscan_TIR_dom,pfscan_Ig-like_dom	-	no_errors	IL18RAP	HGNC	ENSG00000115607				89	0	0	59	14	19.1781
SLC9A4	0	genome.wustl.edu	37	2	103090419	103090419	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	103090419	103090419	G	A	SNP	SLC9A4	ENST00000295269	human	ensembl	74_37	+1	known	silent	c.201	p.V67	0.987	tigrfam_NaH_exchanger	pfam_Cation/H_exchanger,prints_NaH_exchanger,prints_Na/H_exchanger_2,tigrfam_NaH_exchanger	-	no_errors	SLC9A4	HGNC	ENSG00000180251				148	0	0	113	12	9.6
SLC9A4	0	genome.wustl.edu	37	2	103121821	103121821	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	103121821	103121821	G	C	SNP	SLC9A4	ENST00000295269	human	ensembl	74_37	+1	known	missense	c.1089	p.E363D	1.000	pfam_Cation/H_exchanger,tigrfam_NaH_exchanger	pfam_Cation/H_exchanger,prints_NaH_exchanger,prints_Na/H_exchanger_2,tigrfam_NaH_exchanger	-	no_errors	SLC9A4	HGNC	ENSG00000180251				81	0	0	52	18	25.7143
SLC9A4	0	genome.wustl.edu	37	2	103130670	103130670	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	103130670	103130670	A	G	SNP	SLC9A4	ENST00000295269	human	ensembl	74_37	+1	known	missense	c.1681	p.T561A	0.231	tigrfam_NaH_exchanger	pfam_Cation/H_exchanger,prints_NaH_exchanger,prints_Na/H_exchanger_2,tigrfam_NaH_exchanger	-	no_errors	SLC9A4	HGNC	ENSG00000180251				145	0	0	101	10	9.00901
HPCAL1	0	genome.wustl.edu	37	2	10559932	10559932	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	10559932	10559932	C	T	SNP	HPCAL1	ENST00000307845	human	ensembl	74_37	+1	known	missense	c.49	p.R17W	1.000	prints_Recoverin	pfam_EF_hand_dom,pfam_SPARC/Testican_Ca-bd-dom,smart_EF_hand_dom,pfscan_EF_hand_dom,prints_Recoverin	-	no_errors	HPCAL1	HGNC	ENSG00000115756				37	0	0	34	9	20.9302
C2orf40	0	genome.wustl.edu	37	2	106690348	106690348	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	106690348	106690348	T	C	SNP	C2orf40	ENST00000238044	human	ensembl	74_37	+1	known	missense	c.134	p.V45A	0.820	NULL	NULL	-	no_errors	C2orf40	HGNC	ENSG00000119147				239	0	0	181	20	9.95025
C2orf40	0	genome.wustl.edu	37	2	106694242	106694242	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	106694242	106694242	T	G	SNP	C2orf40	ENST00000238044	human	ensembl	74_37	+1	known	missense	c.307	p.Y103D	0.991	NULL	NULL	-	no_errors	C2orf40	HGNC	ENSG00000119147				109	0	0	102	7	6.42202
NOL10	0	genome.wustl.edu	37	2	10729375	10729375	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	10729375	10729375	T	C	SNP	NOL10	ENST00000381685	human	ensembl	74_37	-1	known	silent	c.1638	p.E546	1.000	NULL	pfam_NUC153,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	NOL10	HGNC	ENSG00000115761				93	0	0	76	8	9.52381
SNTG2	0	genome.wustl.edu	37	2	1079240	1079240	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	1079240	1079240	T	A	SNP	SNTG2	ENST00000308624	human	ensembl	74_37	+1	known	missense	c.109	p.S37T	0.760	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SNTG2	HGNC	ENSG00000172554				115	1	0.862069	81	8	8.98876
RGPD4	0	genome.wustl.edu	37	2	108487789	108487789	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	108487789	108487789	C	T	SNP	RGPD4	ENST00000354986	human	ensembl	74_37	+1	known	missense	c.3329	p.A1110V	1.000	pfam_Ran_bind_dom,smart_Ran_bind_dom,pfscan_Ran_bind_dom	pfam_Ran_bind_dom,pfam_GRIP,pfam_TPR_1,pfam_TPR_2,superfamily_GRIP,smart_TPR_repeat,smart_Ran_bind_dom,smart_GRIP,pfscan_GRIP,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Ran_bind_dom	-	no_errors	RGPD4	HGNC	ENSG00000196862				227	0	0	141	44	23.7838
RANBP2	0	genome.wustl.edu	37	2	109371632	109371632	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	109371632	109371632	T	A	SNP	RANBP2	ENST00000283195	human	ensembl	74_37	+1	known	missense	c.2383	p.Y795N	1.000	NULL	pfam_Ran_bind_dom,pfam_Znf_RanBP2,pfam_IR1-M,pfam_Cyclophilin-like_PPIase_dom,pfam_TPR_1,superfamily_Cyclophilin-like_PPIase_dom,smart_TPR_repeat,smart_Ran_bind_dom,smart_Znf_RanBP2,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Znf_RanBP2,pfscan_Cyclophilin-like_PPIase_dom,pfscan_Ran_bind_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	RANBP2	HGNC	ENSG00000153201				325	0	0	276	25	8.30565
RANBP2	0	genome.wustl.edu	37	2	109371681	109371681	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	109371681	109371681	T	G	SNP	RANBP2	ENST00000283195	human	ensembl	74_37	+1	known	missense	c.2432	p.L811R	1.000	NULL	pfam_Ran_bind_dom,pfam_Znf_RanBP2,pfam_IR1-M,pfam_Cyclophilin-like_PPIase_dom,pfam_TPR_1,superfamily_Cyclophilin-like_PPIase_dom,smart_TPR_repeat,smart_Ran_bind_dom,smart_Znf_RanBP2,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Znf_RanBP2,pfscan_Cyclophilin-like_PPIase_dom,pfscan_Ran_bind_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	RANBP2	HGNC	ENSG00000153201				356	1	0.280112	285	23	7.46753
RANBP2	0	genome.wustl.edu	37	2	109371714	109371714	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	109371714	109371714	A	C	SNP	RANBP2	ENST00000283195	human	ensembl	74_37	+1	known	missense	c.2465	p.K822T	1.000	NULL	pfam_Ran_bind_dom,pfam_Znf_RanBP2,pfam_IR1-M,pfam_Cyclophilin-like_PPIase_dom,pfam_TPR_1,superfamily_Cyclophilin-like_PPIase_dom,smart_TPR_repeat,smart_Ran_bind_dom,smart_Znf_RanBP2,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Znf_RanBP2,pfscan_Cyclophilin-like_PPIase_dom,pfscan_Ran_bind_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	RANBP2	HGNC	ENSG00000153201				294	0	0	219	15	6.41026
RANBP2	0	genome.wustl.edu	37	2	109380767	109380767	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	109380767	109380767	G	A	SNP	RANBP2	ENST00000283195	human	ensembl	74_37	+1	known	missense	c.3772	p.A1258T	1.000	pfam_Ran_bind_dom,smart_Ran_bind_dom,pfscan_Ran_bind_dom	pfam_Ran_bind_dom,pfam_Znf_RanBP2,pfam_IR1-M,pfam_Cyclophilin-like_PPIase_dom,pfam_TPR_1,superfamily_Cyclophilin-like_PPIase_dom,smart_TPR_repeat,smart_Ran_bind_dom,smart_Znf_RanBP2,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Znf_RanBP2,pfscan_Cyclophilin-like_PPIase_dom,pfscan_Ran_bind_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	RANBP2	HGNC	ENSG00000153201				96	0	0	64	14	17.9487
RANBP2	0	genome.wustl.edu	37	2	109380996	109380996	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	109380996	109380996	T	C	SNP	RANBP2	ENST00000283195	human	ensembl	74_37	+1	known	missense	c.4001	p.I1334T	0.057	NULL	pfam_Ran_bind_dom,pfam_Znf_RanBP2,pfam_IR1-M,pfam_Cyclophilin-like_PPIase_dom,pfam_TPR_1,superfamily_Cyclophilin-like_PPIase_dom,smart_TPR_repeat,smart_Ran_bind_dom,smart_Znf_RanBP2,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Znf_RanBP2,pfscan_Cyclophilin-like_PPIase_dom,pfscan_Ran_bind_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	RANBP2	HGNC	ENSG00000153201				91	0	0	53	7	11.6667
SOWAHC	0	genome.wustl.edu	37	2	110373498	110373498	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	110373498	110373498	A	G	SNP	SOWAHC	ENST00000356454	human	ensembl	74_37	+1	known	missense	c.1432	p.R478G	0.942	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	SOWAHC	HGNC	ENSG00000198142				86	0	0	67	8	10.6667
ZC3H6	0	genome.wustl.edu	37	2	113089388	113089388	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	113089388	113089388	C	G	SNP	ZC3H6	ENST00000343936	human	ensembl	74_37	+1	known	missense	c.2893	p.L965V	0.996	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H6	HGNC	ENSG00000188177				83	0	0	74	6	7.5
ZC3H6	0	genome.wustl.edu	37	2	113090015	113090015	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	113090015	113090015	C	T	SNP	ZC3H6	ENST00000343936	human	ensembl	74_37	+1	known	silent	c.3520	p.L1174	1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H6	HGNC	ENSG00000188177				196	0	0	141	18	11.3208
POLR1B	0	genome.wustl.edu	37	2	113315607	113315607	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	113315607	113315607	A	G	SNP	POLR1B	ENST00000541869	human	ensembl	74_37	+1	known	missense	c.1393	p.T465A	1.000	NULL	pfam_DNA-dir_RNA_pol_su2_6,pfam_RNA_pol_bsu_protrusion,pfam_RNA_pol_Rpb2_3,pfam_RNA_pol_Rpb2_7,pfam_RNA_pol_Rpa2-specific,pfam_RNA_pol_Rpb2_2,pfam_RNA_pol_Rpb2_5	-	no_errors	POLR1B	HGNC	ENSG00000125630				73	0	0	51	3	5.55556
POLR1B	0	genome.wustl.edu	37	2	113332742	113332742	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	113332742	113332742	A	G	SNP	POLR1B	ENST00000541869	human	ensembl	74_37	+1	known	silent	c.2958	p.T986	0.813	pfam_DNA-dir_RNA_pol_su2_6	pfam_DNA-dir_RNA_pol_su2_6,pfam_RNA_pol_bsu_protrusion,pfam_RNA_pol_Rpb2_3,pfam_RNA_pol_Rpb2_7,pfam_RNA_pol_Rpa2-specific,pfam_RNA_pol_Rpb2_2,pfam_RNA_pol_Rpb2_5	-	no_errors	POLR1B	HGNC	ENSG00000125630				128	0	0	116	12	9.375
CKAP2L	0	genome.wustl.edu	37	2	113498582	113498582	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	113498582	113498582	T	A	SNP	CKAP2L	ENST00000302450	human	ensembl	74_37	-1	known	missense	c.1825	p.I609F	0.001	NULL	NULL	-	no_errors	CKAP2L	HGNC	ENSG00000169607				139	0	0	114	9	7.31707
CKAP2L	0	genome.wustl.edu	37	2	113513703	113513703	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	113513703	113513703	T	C	SNP	CKAP2L	ENST00000435431	human	ensembl	74_37	-1	known	missense	c.487	p.T163A	0.072	NULL	NULL	-	no_errors	CKAP2L	HGNC	ENSG00000169607				222	0	0	181	10	5.2356
CBWD2	0	genome.wustl.edu	37	2	114195463	114195463	+	Silent	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	114195463	114195463	A	T	SNP	CBWD2	ENST00000259199	human	ensembl	74_37	+1	known	silent	c.18	p.G6	0.000	NULL	pfam_CobW/HypB/UreG_dom,pfam_Cbl_biosynth_CobW-like_C,superfamily_P-loop_NTPase,superfamily_Cbl_biosynth_CobW-like_C	-	no_errors	CBWD2	HGNC	ENSG00000136682				118	0	0	68	7	9.33333
FOXD4L1	0	genome.wustl.edu	37	2	114257141	114257141	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	114257141	114257141	G	A	SNP	FOXD4L1	ENST00000306507	human	ensembl	74_37	+1	known	missense	c.308	p.R103Q	0.247	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXD4L1	HGNC	ENSG00000184492				155	0	0	132	43	24.5714
FOXD4L1	0	genome.wustl.edu	37	2	114257269	114257269	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	114257269	114257269	C	T	SNP	FOXD4L1	ENST00000306507	human	ensembl	74_37	+1	known	missense	c.436	p.R146C	1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXD4L1	HGNC	ENSG00000184492				240	0	0	269	23	7.87671
FOXD4L1	0	genome.wustl.edu	37	2	114257505	114257505	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	114257505	114257505	C	T	SNP	FOXD4L1	ENST00000306507	human	ensembl	74_37	+1	known	silent	c.672	p.H224	0.430	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXD4L1	HGNC	ENSG00000184492				77	0	0	90	20	18.1818
GREB1	0	genome.wustl.edu	37	2	11765302	11765302	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	11765302	11765302	G	A	SNP	GREB1	ENST00000234142	human	ensembl	74_37	+1	known	nonsense	c.4170	p.W1390*	0.943	superfamily_P-loop_NTPase	superfamily_P-loop_NTPase	-	no_errors	GREB1	HGNC	ENSG00000196208				228	0	0	192	17	8.13397
DDX18	0	genome.wustl.edu	37	2	118586952	118586952	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	118586952	118586952	T	A	SNP	DDX18	ENST00000263239	human	ensembl	74_37	+1	known	missense	c.1780	p.S594T	1.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX18	HGNC	ENSG00000088205				180	0	0	127	9	6.61765
CCDC93	0	genome.wustl.edu	37	2	118766233	118766233	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	118766233	118766233	A	G	SNP	CCDC93	ENST00000376300	human	ensembl	74_37	-1	known	missense	c.44	p.V15A	1.000	NULL	pfam_DUF2037	-	no_errors	CCDC93	HGNC	ENSG00000125633				104	0	0	75	7	8.53659
INSIG2	0	genome.wustl.edu	37	2	118854319	118854319	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	118854319	118854319	A	T	SNP	INSIG2	ENST00000245787	human	ensembl	74_37	+1	known	missense	c.187	p.I63F	1.000	pfam_INSIG_fam	pfam_INSIG_fam	-	no_errors	INSIG2	HGNC	ENSG00000125629				132	0	0	106	17	13.8211
LPIN1	0	genome.wustl.edu	37	2	11911703	11911703	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	11911703	11911703	A	G	SNP	LPIN1	ENST00000449576	human	ensembl	74_37	+1	known	missense	c.641	p.D214G	1.000	NULL	pfam_LNS2,pfam_Lipin_N,superfamily_HAD-like_dom,superfamily_WD40_repeat_dom,smart_LNS2	-	no_errors	LPIN1	HGNC	ENSG00000134324				33	0	0	21	3	12.5
STEAP3	0	genome.wustl.edu	37	2	120012365	120012365	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	120012365	120012365	G	A	SNP	STEAP3	ENST00000393110	human	ensembl	74_37	+1	known	missense	c.1156	p.V386M	0.905	pfam_Fe3_Rdtase_TM_dom	pfam_Fe3_Rdtase_TM_dom	-	no_errors	STEAP3	HGNC	ENSG00000115107				44	0	0	40	5	11.1111
TMEM37	0	genome.wustl.edu	37	2	120194588	120194588	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	120194588	120194588	C	T	SNP	TMEM37	ENST00000306406	human	ensembl	74_37	+1	known	missense	c.145	p.H49Y	0.994	NULL	NULL	-	no_errors	TMEM37	HGNC	ENSG00000171227				110	0	0	112	8	6.66667
INHBB	0	genome.wustl.edu	37	2	121104185	121104185	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	121104185	121104185	T	C	SNP	INHBB	ENST00000295228	human	ensembl	74_37	+1	known	missense	c.421	p.S141P	1.000	pfam_TGF-b_N,prints_Inhibin_betaB	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C,prints_Inhibin_betaB,prints_Inhibin_asu	-	no_errors	INHBB	HGNC	ENSG00000163083				19	0	0	11	5	31.25
INHBB	0	genome.wustl.edu	37	2	121106966	121106966	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	121106966	121106966	A	G	SNP	INHBB	ENST00000295228	human	ensembl	74_37	+1	known	missense	c.740	p.N247S	0.997	pfam_TGF-b_N,prints_Inhibin_betaB	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C,prints_Inhibin_betaB,prints_Inhibin_asu	-	no_errors	INHBB	HGNC	ENSG00000163083				104	0	0	110	11	9.09091
GLI2	0	genome.wustl.edu	37	2	121712859	121712859	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	121712859	121712859	C	T	SNP	GLI2	ENST00000361492	human	ensembl	74_37	+1	known	missense	c.496	p.L166F	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI2	HGNC	ENSG00000074047				66	0	0	64	6	8.57143
CLASP1	0	genome.wustl.edu	37	2	122215273	122215273	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	122215273	122215273	C	T	SNP	CLASP1	ENST00000263710	human	ensembl	74_37	-1	known	missense	c.1375	p.A459T	1.000	pfam_CLASP_N_dom,superfamily_ARM-type_fold	pfam_CLASP_N_dom,pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	CLASP1	HGNC	ENSG00000074054				91	0	0	68	4	5.55556
CNTNAP5	0	genome.wustl.edu	37	2	125367380	125367380	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	125367380	125367380	A	T	SNP	CNTNAP5	ENST00000431078	human	ensembl	74_37	+1	known	missense	c.1756	p.I586F	0.990	superfamily_Fibrinogen_a/b/g_C_dom	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP5	HGNC	ENSG00000155052				60	0	0	64	4	5.88235
CNTNAP5	0	genome.wustl.edu	37	2	125367427	125367427	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	125367427	125367427	C	T	SNP	CNTNAP5	ENST00000431078	human	ensembl	74_37	+1	known	silent	c.1803	p.A601	0.863	superfamily_Fibrinogen_a/b/g_C_dom	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP5	HGNC	ENSG00000155052				79	0	0	68	5	6.84932
CNTNAP5	0	genome.wustl.edu	37	2	125530570	125530570	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	125530570	125530570	C	T	SNP	CNTNAP5	ENST00000431078	human	ensembl	74_37	+1	known	nonsense	c.2725	p.Q909*	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP5	HGNC	ENSG00000155052				164	0	0	99	24	19.5122
IWS1	0	genome.wustl.edu	37	2	128253655	128253655	+	Silent	SNP	C	C	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	128253655	128253655	C	G	SNP	IWS1	ENST00000295321	human	ensembl	74_37	-1	known	silent	c.1635	p.R545	0.010	NULL	pfam_TFIIS_N,superfamily_TFIIS_N	-	no_errors	IWS1	HGNC	ENSG00000163166				303	0	0	254	26	9.28571
IWS1	0	genome.wustl.edu	37	2	128263102	128263102	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	128263102	128263102	C	A	SNP	IWS1	ENST00000295321	human	ensembl	74_37	-1	known	missense	c.377	p.R126M	0.952	NULL	pfam_TFIIS_N,superfamily_TFIIS_N	-	no_errors	IWS1	HGNC	ENSG00000163166				153	1	0.649351	146	14	8.75
MYO7B	0	genome.wustl.edu	37	2	128366286	128366286	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	128366286	128366286	C	T	SNP	MYO7B	ENST00000389524	human	ensembl	74_37	+1	known	missense	c.2647	p.P883S	0.017	superfamily_P-loop_NTPase,pfscan_IQ_motif_EF-hand-BS	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,pfam_SH3_2,superfamily_P-loop_NTPase,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_Band_41_domain,smart_SH3_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_SH3_domain,prints_Myosin_head_motor_dom	-	no_errors	MYO7B	HGNC	ENSG00000169994				27	0	0	30	3	9.09091
LIMS2	0	genome.wustl.edu	37	2	128412420	128412420	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	128412420	128412420	C	T	SNP	LIMS2	ENST00000324938	human	ensembl	74_37	-1	known	silent	c.294	p.P98	0.186	pirsf_PINCH,pfscan_Znf_LIM	pfam_Znf_LIM,smart_Znf_LIM,pirsf_PINCH,pfscan_Znf_LIM	-	no_errors	LIMS2	HGNC	ENSG00000072163				31	0	0	30	11	26.8293
WDR33	0	genome.wustl.edu	37	2	128471327	128471327	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	128471327	128471327	C	T	SNP	WDR33	ENST00000322313	human	ensembl	74_37	-1	known	silent	c.3138	p.R1046	1.000	NULL	pfam_WD40_repeat,pfam_Collagen,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR33	HGNC	ENSG00000136709				107	0	0	125	7	5.30303
TRIB2	0	genome.wustl.edu	37	2	12863637	12863637	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	12863637	12863637	G	A	SNP	TRIB2	ENST00000155926	human	ensembl	74_37	+1	known	silent	c.522	p.R174	0.826	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TRIB2	HGNC	ENSG00000071575				85	0	0	80	8	9.09091
SAP130	0	genome.wustl.edu	37	2	128767876	128767876	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	128767876	128767876	G	A	SNP	SAP130	ENST00000357702	human	ensembl	74_37	-1	known	missense	c.914	p.T305M	0.995	NULL	NULL	-	no_errors	SAP130	HGNC	ENSG00000136715				65	0	0	54	7	11.4754
UGGT1	0	genome.wustl.edu	37	2	128930248	128930248	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	128930248	128930248	T	C	SNP	UGGT1	ENST00000259253	human	ensembl	74_37	+1	known	missense	c.3206	p.L1069P	0.380	pfam_UDP-g_GGtrans	pfam_UDP-g_GGtrans	-	no_errors	UGGT1	HGNC	ENSG00000136731				113	0	0	89	6	6.31579
SMPD4	0	genome.wustl.edu	37	2	130918776	130918776	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	130918776	130918776	C	T	SNP	SMPD4	ENST00000409031	human	ensembl	74_37	-1	known	missense	c.1051	p.A351T	1.000	NULL	NULL	-	no_errors	SMPD4	HGNC	ENSG00000136699				97	0	0	65	5	7.14286
AMER3	0	genome.wustl.edu	37	2	131520350	131520350	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	131520350	131520350	T	G	SNP	AMER3	ENST00000321420	human	ensembl	74_37	+1	known	missense	c.705	p.C235W	0.925	pfam_Uncharacterised_FAM123	pfam_Uncharacterised_FAM123	-	no_errors	AMER3	HGNC	ENSG00000178171				89	0	0	80	16	16.6667
GPR39	0	genome.wustl.edu	37	2	133174728	133174728	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	133174728	133174728	T	C	SNP	GPR39	ENST00000329321	human	ensembl	74_37	+1	known	missense	c.113	p.L38P	0.683	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR39	HGNC	ENSG00000183840				84	0	0	68	8	10.5263
MGAT5	0	genome.wustl.edu	37	2	135095865	135095865	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	135095865	135095865	T	C	SNP	MGAT5	ENST00000281923	human	ensembl	74_37	+1	known	silent	c.681	p.S227	0.989	NULL	NULL	-	no_errors	MGAT5	HGNC	ENSG00000152127				112	0	0	66	6	8.33333
CCNT2	0	genome.wustl.edu	37	2	135711759	135711759	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	135711759	135711759	G	A	SNP	CCNT2	ENST00000264157	human	ensembl	74_37	+1	known	silent	c.1734	p.S578	0.018	NULL	pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	CCNT2	HGNC	ENSG00000082258				69	0	0	62	9	12.6761
R3HDM1	0	genome.wustl.edu	37	2	136389319	136389319	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	136389319	136389319	G	T	SNP	R3HDM1	ENST00000264160	human	ensembl	74_37	+1	known	nonsense	c.529	p.E177*	1.000	pfam_R3H_ss-bd,smart_R3H_ss-bd,pfscan_R3H_ss-bd	pfam_R3H_ss-bd,smart_R3H_ss-bd,pfscan_R3H_ss-bd	-	no_errors	R3HDM1	HGNC	ENSG00000048991				62	0	0	41	8	16.3265
R3HDM1	0	genome.wustl.edu	37	2	136437848	136437848	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	136437848	136437848	C	T	SNP	R3HDM1	ENST00000264160	human	ensembl	74_37	+1	known	missense	c.2308	p.P770S	1.000	NULL	pfam_R3H_ss-bd,smart_R3H_ss-bd,pfscan_R3H_ss-bd	-	no_errors	R3HDM1	HGNC	ENSG00000048991				116	0	0	99	10	9.17431
SPOPL	0	genome.wustl.edu	37	2	139308136	139308136	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	139308136	139308136	T	C	SNP	SPOPL	ENST00000280098	human	ensembl	74_37	+1	known	silent	c.162	p.S54	1.000	pfam_MATH,superfamily_TRAF-like,smart_MATH,pfscan_MATH	pfam_BTB_POZ,pfam_MATH,superfamily_TRAF-like,superfamily_BTB/POZ_fold,smart_MATH,smart_BTB/POZ-like,pfscan_BTB/POZ-like,pfscan_MATH	-	no_errors	SPOPL	HGNC	ENSG00000144228				175	0	0	88	35	28.4553
NXPH2	0	genome.wustl.edu	37	2	139429149	139429149	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	139429149	139429149	G	A	SNP	NXPH2	ENST00000272641	human	ensembl	74_37	-1	known	silent	c.138	p.N46	0.975	pirsf_Neurexophilin	pfam_NXPH/NXPE,pirsf_Neurexophilin	-	no_errors	NXPH2	HGNC	ENSG00000144227				124	0	0	120	11	8.39695
LRP1B	0	genome.wustl.edu	37	2	140990805	140990805	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	140990805	140990805	C	A	SNP	LRP1B	ENST00000389484	human	ensembl	74_37	-1	known	nonsense	c.13750	p.E4584*	1.000	NULL	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702				71	0	0	48	8	14.2857
LRP1B	0	genome.wustl.edu	37	2	141665468	141665468	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	141665468	141665468	G	A	SNP	LRP1B	ENST00000389484	human	ensembl	74_37	-1	known	silent	c.3498	p.G1166	0.997	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702				235	0	0	171	15	8.06452
TPO	0	genome.wustl.edu	37	2	1437321	1437321	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	1437321	1437321	A	G	SNP	TPO	ENST00000329066	human	ensembl	74_37	+1	known	silent	c.291	p.S97	0.000	NULL	pfam_Haem_peroxidase_animal,pfam_EGF-like_Ca-bd_dom,superfamily_Haem_peroxidase,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Sushi_SCR_CCP,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	-	no_errors	TPO	HGNC	ENSG00000115705				86	0	0	47	15	24.1935
ARHGAP15	0	genome.wustl.edu	37	2	144244959	144244959	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	144244959	144244959	A	T	SNP	ARHGAP15	ENST00000295095	human	ensembl	74_37	+1	known	missense	c.721	p.S241C	1.000	NULL	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom	-	no_errors	ARHGAP15	HGNC	ENSG00000075884				191	0	0	121	11	8.33333
ZEB2	0	genome.wustl.edu	37	2	145156756	145156756	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	145156756	145156756	G	A	SNP	ZEB2	ENST00000303660	human	ensembl	74_37	-1	known	silent	c.1998	p.N666	1.000	superfamily_Homeodomain-like,smart_Homeobox_dom	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZEB2	HGNC	ENSG00000169554				148	0	0	98	30	23.4375
ZEB2	0	genome.wustl.edu	37	2	145157213	145157213	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	145157213	145157213	G	A	SNP	ZEB2	ENST00000303660	human	ensembl	74_37	-1	known	missense	c.1541	p.P514L	1.000	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZEB2	HGNC	ENSG00000169554				89	0	0	62	23	27.0588
MBD5	0	genome.wustl.edu	37	2	149247137	149247137	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	149247137	149247137	C	T	SNP	MBD5	ENST00000407073	human	ensembl	74_37	+1	known	silent	c.3237	p.G1079	1.000	NULL	superfamily_DNA-bd_dom,smart_Methyl_CpG_DNA-bd,pfscan_Methyl_CpG_DNA-bd,pfscan_PWWP_dom	-	no_errors	MBD5	HGNC	ENSG00000204406				95	0	0	70	7	9.09091
MBD5	0	genome.wustl.edu	37	2	149247533	149247533	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	149247533	149247533	G	A	SNP	MBD5	ENST00000407073	human	ensembl	74_37	+1	known	silent	c.3633	p.K1211	0.172	NULL	superfamily_DNA-bd_dom,smart_Methyl_CpG_DNA-bd,pfscan_Methyl_CpG_DNA-bd,pfscan_PWWP_dom	-	no_errors	MBD5	HGNC	ENSG00000204406				144	0	0	113	9	7.37705
RND3	0	genome.wustl.edu	37	2	151326555	151326555	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	151326555	151326555	C	T	SNP	RND3	ENST00000263895	human	ensembl	74_37	-1	known	silent	c.681	p.S227	0.004	NULL	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RND3	HGNC	ENSG00000115963				123	0	0	80	7	8.04598
RIF1	0	genome.wustl.edu	37	2	152330503	152330503	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	152330503	152330503	T	C	SNP	RIF1	ENST00000243326	human	ensembl	74_37	+1	known	missense	c.7121	p.I2374T	1.000	NULL	pfam_Rif1_N,superfamily_ARM-type_fold	-	no_errors	RIF1	HGNC	ENSG00000080345				140	0	0	86	8	8.51064
NEB	0	genome.wustl.edu	37	2	152382735	152382735	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	152382735	152382735	G	A	SNP	NEB	ENST00000397345	human	ensembl	74_37	-1	known	silent	c.21987	p.C7329	1.000	smart_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,pfscan_Nebulin_35r-motif,pfscan_SH3_domain,prints_Nebulin	-	no_errors	NEB	HGNC	ENSG00000183091				36	0	0	28	4	12.5
NEB	0	genome.wustl.edu	37	2	152410411	152410411	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	152410411	152410411	G	A	SNP	NEB	ENST00000397345	human	ensembl	74_37	-1	known	silent	c.19557	p.H6519	0.991	smart_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,pfscan_Nebulin_35r-motif,pfscan_SH3_domain,prints_Nebulin	-	no_errors	NEB	HGNC	ENSG00000183091				124	0	0	72	19	20.8791
NEB	0	genome.wustl.edu	37	2	152472522	152472522	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	152472522	152472522	A	G	SNP	NEB	ENST00000397345	human	ensembl	74_37	-1	known	silent	c.11283	p.A3761	0.978	pfam_Nebulin_35r-motif,smart_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,pfscan_Nebulin_35r-motif,pfscan_SH3_domain,prints_Nebulin	-	no_errors	NEB	HGNC	ENSG00000183091				50	0	0	29	5	14.7059
NEB	0	genome.wustl.edu	37	2	152483715	152483715	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	152483715	152483715	A	G	SNP	NEB	ENST00000397345	human	ensembl	74_37	-1	known	missense	c.10148	p.I3383T	0.031	smart_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,pfscan_Nebulin_35r-motif,pfscan_SH3_domain,prints_Nebulin	-	no_errors	NEB	HGNC	ENSG00000183091				81	0	0	49	3	5.76923
NEB	0	genome.wustl.edu	37	2	152496962	152496962	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	152496962	152496962	A	G	SNP	NEB	ENST00000397345	human	ensembl	74_37	-1	known	silent	c.8592	p.D2864	0.007	smart_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,pfscan_Nebulin_35r-motif,pfscan_SH3_domain,prints_Nebulin	-	no_errors	NEB	HGNC	ENSG00000183091				282	0	0	225	26	10.3586
NEB	0	genome.wustl.edu	37	2	152496986	152496986	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	152496986	152496986	C	G	SNP	NEB	ENST00000397345	human	ensembl	74_37	-1	known	missense	c.8568	p.K2856N	1.000	smart_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,pfscan_Nebulin_35r-motif,pfscan_SH3_domain,prints_Nebulin	-	no_errors	NEB	HGNC	ENSG00000183091				318	0	0	264	23	8.01394
NEB	0	genome.wustl.edu	37	2	152496994	152496994	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	152496994	152496994	G	A	SNP	NEB	ENST00000397345	human	ensembl	74_37	-1	known	silent	c.8560	p.L2854	0.989	smart_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,pfscan_Nebulin_35r-motif,pfscan_SH3_domain,prints_Nebulin	-	no_errors	NEB	HGNC	ENSG00000183091				324	0	0	263	23	8.04196
NEB	0	genome.wustl.edu	37	2	152497096	152497096	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	152497096	152497096	A	T	SNP	NEB	ENST00000397345	human	ensembl	74_37	-1	known	missense	c.8458	p.S2820T	1.000	pfam_Nebulin_35r-motif,smart_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,pfscan_Nebulin_35r-motif,pfscan_SH3_domain,prints_Nebulin	-	no_errors	NEB	HGNC	ENSG00000183091				265	0	0	234	25	9.65251
NEB	0	genome.wustl.edu	37	2	152506866	152506866	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	152506866	152506866	G	T	SNP	NEB	ENST00000397345	human	ensembl	74_37	-1	known	missense	c.7255	p.L2419M	1.000	pfam_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,pfscan_Nebulin_35r-motif,pfscan_SH3_domain,prints_Nebulin	-	no_errors	NEB	HGNC	ENSG00000183091				113	0	0	75	6	7.40741
NEB	0	genome.wustl.edu	37	2	152522861	152522861	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	152522861	152522861	T	C	SNP	NEB	ENST00000397345	human	ensembl	74_37	-1	known	missense	c.4774	p.S1592G	1.000	smart_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,pfscan_Nebulin_35r-motif,pfscan_SH3_domain,prints_Nebulin	-	no_errors	NEB	HGNC	ENSG00000183091				130	0	0	119	9	7.03125
NEB	0	genome.wustl.edu	37	2	152536326	152536326	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	152536326	152536326	T	C	SNP	NEB	ENST00000397345	human	ensembl	74_37	-1	known	missense	c.3164	p.D1055G	1.000	superfamily_Adhesion_dom,smart_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,pfscan_Nebulin_35r-motif,pfscan_SH3_domain,prints_Nebulin	-	no_errors	NEB	HGNC	ENSG00000183091				115	0	0	73	8	9.87654
FMNL2	0	genome.wustl.edu	37	2	153378496	153378496	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	153378496	153378496	C	T	SNP	FMNL2	ENST00000288670	human	ensembl	74_37	+1	known	missense	c.157	p.R53W	1.000	pfam_GTPase-bd,superfamily_ARM-type_fold	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,superfamily_ARM-type_fold,smart_FH2_Formin,prints_Wilms_tumour	-	no_errors	FMNL2	HGNC	ENSG00000157827				99	0	0	67	14	17.284
FMNL2	0	genome.wustl.edu	37	2	153475388	153475388	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	153475388	153475388	T	C	SNP	FMNL2	ENST00000288670	human	ensembl	74_37	+1	known	missense	c.1343	p.V448A	1.000	pfam_FH3_dom,superfamily_ARM-type_fold	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,superfamily_ARM-type_fold,smart_FH2_Formin,prints_Wilms_tumour	-	no_errors	FMNL2	HGNC	ENSG00000157827				70	0	0	58	7	10.7692
RPRM	0	genome.wustl.edu	37	2	154334890	154334890	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	154334890	154334890	C	T	SNP	RPRM	ENST00000325926	human	ensembl	74_37	-1	known	missense	c.190	p.V64M	1.000	NULL	NULL	-	no_errors	RPRM	HGNC	ENSG00000177519				33	0	0	19	4	17.3913
GALNT13	0	genome.wustl.edu	37	2	155098640	155098640	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	155098640	155098640	A	G	SNP	GALNT13	ENST00000409237	human	ensembl	74_37	+1	known	missense	c.409	p.S137G	1.000	pfam_Glyco_trans_2	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT13	HGNC	ENSG00000144278				84	0	0	58	4	6.45161
NR4A2	0	genome.wustl.edu	37	2	157186496	157186496	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	157186496	157186496	C	A	SNP	NR4A2	ENST00000539077	human	ensembl	74_37	-1	known	missense	c.236	p.S79I	1.000	prints_NURR_rcpt	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_NURR_rcpt,prints_Nuc_orph_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Retinoic_acid_rcpt	-	no_errors	NR4A2	HGNC	ENSG00000153234				113	0	0	74	25	25.2525
GPD2	0	genome.wustl.edu	37	2	157369851	157369851	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	157369851	157369851	G	A	SNP	GPD2	ENST00000310454	human	ensembl	74_37	+1	known	nonsense	c.504	p.W168*	1.000	pfam_FAD-dep_OxRdtase	pfam_FAD-dep_OxRdtase,pfam_FAD_bind_dom,smart_EF_hand_dom,pfscan_EF_hand_dom,prints_G3P_DH_FAD-dep	-	no_errors	GPD2	HGNC	ENSG00000115159				113	0	0	106	11	9.40171
GPD2	0	genome.wustl.edu	37	2	157425912	157425912	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	157425912	157425912	T	A	SNP	GPD2	ENST00000310454	human	ensembl	74_37	+1	known	missense	c.1338	p.D446E	0.977	NULL	pfam_FAD-dep_OxRdtase,pfam_FAD_bind_dom,smart_EF_hand_dom,pfscan_EF_hand_dom,prints_G3P_DH_FAD-dep	-	no_errors	GPD2	HGNC	ENSG00000115159				75	0	0	60	7	10.4478
DDX1	0	genome.wustl.edu	37	2	15769774	15769774	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	15769774	15769774	A	G	SNP	DDX1	ENST00000233084	human	ensembl	74_37	+1	known	missense	c.1924	p.R642G	0.996	pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_SPRY_rcpt,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_ConA-like_lec_gl_sf,smart_Helicase_ATP-bd,smart_SPla/RYanodine_receptor_subgr,smart_Helicase_C,pfscan_B30.2/SPRY,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX1	HGNC	ENSG00000079785				66	0	0	62	4	6.06061
ACVR1C	0	genome.wustl.edu	37	2	158406865	158406865	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	158406865	158406865	A	G	SNP	ACVR1C	ENST00000243349	human	ensembl	74_37	-1	known	missense	c.584	p.I195T	1.000	superfamily_Kinase-like_dom,smart_TGF_beta_rcpt_GS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_TGF_beta_rcpt_GS,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_TGF_beta_rcpt_GS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	ACVR1C	HGNC	ENSG00000123612				141	0	0	117	17	12.6866
UPP2	0	genome.wustl.edu	37	2	158971666	158971666	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	158971666	158971666	G	A	SNP	UPP2	ENST00000409859	human	ensembl	74_37	+1	known	missense	c.405	p.M135I	0.997	pfam_Nucleoside_phosphorylase_d,tigrfam_Uridine_phosphorylase_euk	pfam_Nucleoside_phosphorylase_d,tigrfam_Uridine_phosphorylase_euk	-	no_errors	UPP2	HGNC	ENSG00000007001				123	0	0	105	8	7.07965
PKP4	0	genome.wustl.edu	37	2	159517928	159517928	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	159517928	159517928	A	G	SNP	PKP4	ENST00000389759	human	ensembl	74_37	+1	known	missense	c.2177	p.H726R	1.000	superfamily_ARM-type_fold,smart_Armadillo	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	PKP4	HGNC	ENSG00000144283				59	0	0	54	5	8.47458
TANC1	0	genome.wustl.edu	37	2	160050845	160050845	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	160050845	160050845	C	T	SNP	TANC1	ENST00000263635	human	ensembl	74_37	+1	known	silent	c.2820	p.C940	0.696	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,smart_Ankyrin_rpt,smart_TPR_repeat,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Ankyrin_rpt	-	no_errors	TANC1	HGNC	ENSG00000115183				65	0	0	59	18	23.3766
TANC1	0	genome.wustl.edu	37	2	160050927	160050927	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	160050927	160050927	G	A	SNP	TANC1	ENST00000263635	human	ensembl	74_37	+1	known	missense	c.2902	p.G968S	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,smart_Ankyrin_rpt,smart_TPR_repeat,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Ankyrin_rpt	-	no_errors	TANC1	HGNC	ENSG00000115183				59	0	0	46	4	8
BAZ2B	0	genome.wustl.edu	37	2	160289417	160289417	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	160289417	160289417	G	A	SNP	BAZ2B	ENST00000392783	human	ensembl	74_37	-1	known	missense	c.1751	p.A584V	0.996	NULL	pfam_Bromodomain,pfam_Methyl_CpG_DNA-bd,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_DNA-bd_dom,superfamily_Znf_FYVE_PHD,superfamily_ARM-type_fold,smart_Methyl_CpG_DNA-bd,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Methyl_CpG_DNA-bd,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ2B	HGNC	ENSG00000123636				155	0	0	132	16	10.8108
TANK	0	genome.wustl.edu	37	2	162087958	162087958	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	162087958	162087958	G	A	SNP	TANK	ENST00000259075	human	ensembl	74_37	+1	known	missense	c.997	p.D333N	1.000	NULL	NULL	-	no_errors	TANK	HGNC	ENSG00000136560				124	0	0	89	9	9.18367
TBR1	0	genome.wustl.edu	37	2	162279997	162279997	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	162279997	162279997	C	T	SNP	TBR1	ENST00000389554	human	ensembl	74_37	+1	known	silent	c.1308	p.F436	1.000	NULL	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBR1	HGNC	ENSG00000136535				18	0	0	19	3	13.6364
DPP4	0	genome.wustl.edu	37	2	162875293	162875293	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	162875293	162875293	A	G	SNP	DPP4	ENST00000360534	human	ensembl	74_37	-1	known	missense	c.1366	p.Y456H	1.000	pfam_Peptidase_S9B	pfam_Peptidase_S9B,pfam_Peptidase_S9	-	no_errors	DPP4	HGNC	ENSG00000197635				133	0	0	100	6	5.66038
FIGN	0	genome.wustl.edu	37	2	164466724	164466724	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	164466724	164466724	C	T	SNP	FIGN	ENST00000333129	human	ensembl	74_37	-1	known	missense	c.1618	p.A540T	1.000	pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	FIGN	HGNC	ENSG00000182263				66	0	0	71	14	16.4706
PXDN	0	genome.wustl.edu	37	2	1652818	1652818	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	1652818	1652818	C	T	SNP	PXDN	ENST00000252804	human	ensembl	74_37	-1	known	missense	c.2734	p.A912T	1.000	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like_dom	-	no_errors	PXDN	HGNC	ENSG00000130508				39	0	0	38	3	7.31707
COBLL1	0	genome.wustl.edu	37	2	165551250	165551250	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	165551250	165551250	A	G	SNP	COBLL1	ENST00000194871	human	ensembl	74_37	-1	known	silent	c.2967	p.A989	1.000	NULL	pfam_Cordon-bleu_ubiquitin_domain,pfscan_WH2_dom	-	no_errors	COBLL1	HGNC	ENSG00000082438				79	0	0	48	6	11.1111
SLC38A11	0	genome.wustl.edu	37	2	165768194	165768194	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	165768194	165768194	A	G	SNP	SLC38A11	ENST00000409149	human	ensembl	74_37	-1	known	silent	c.747	p.G249	0.010	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC38A11	HGNC	ENSG00000169507				43	0	0	24	6	20
SCN3A	0	genome.wustl.edu	37	2	165997314	165997314	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	165997314	165997314	G	A	SNP	SCN3A	ENST00000283254	human	ensembl	74_37	-1	known	silent	c.1866	p.N622	1.000	pfam_DUF3451	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,pfscan_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN3A	HGNC	ENSG00000153253				70	0	0	63	9	12.5
SCN2A	0	genome.wustl.edu	37	2	166152539	166152539	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	166152539	166152539	T	C	SNP	SCN2A	ENST00000283256	human	ensembl	74_37	+1	known	missense	c.206	p.I69T	1.000	NULL	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN2A	HGNC	ENSG00000136531				72	0	0	63	4	5.97015
SCN2A	0	genome.wustl.edu	37	2	166168564	166168564	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	166168564	166168564	G	A	SNP	SCN2A	ENST00000283256	human	ensembl	74_37	+1	known	missense	c.1000	p.D334N	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN2A	HGNC	ENSG00000136531				54	0	0	27	5	15.625
SCN2A	0	genome.wustl.edu	37	2	166179742	166179742	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	166179742	166179742	G	A	SNP	SCN2A	ENST00000283256	human	ensembl	74_37	+1	known	missense	c.1748	p.R583Q	0.997	pfam_DUF3451	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN2A	HGNC	ENSG00000136531				94	0	0	70	5	6.66667
SCN2A	0	genome.wustl.edu	37	2	166231207	166231207	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	166231207	166231207	G	A	SNP	SCN2A	ENST00000283256	human	ensembl	74_37	+1	known	missense	c.3985	p.A1329T	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN2A	HGNC	ENSG00000136531				161	0	0	106	14	11.6667
TTC21B	0	genome.wustl.edu	37	2	166786211	166786211	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	166786211	166786211	A	T	SNP	TTC21B	ENST00000243344	human	ensembl	74_37	-1	known	missense	c.1134	p.D378E	1.000	NULL	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC21B	HGNC	ENSG00000123607				73	0	0	57	5	8.06452
TTC21B	0	genome.wustl.edu	37	2	166802129	166802129	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	166802129	166802129	A	C	SNP	TTC21B	ENST00000243344	human	ensembl	74_37	-1	known	missense	c.334	p.Y112D	1.000	smart_TPR_repeat	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC21B	HGNC	ENSG00000123607				73	0	0	74	4	5.12821
SCN1A	0	genome.wustl.edu	37	2	166848920	166848920	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	166848920	166848920	G	A	SNP	SCN1A	ENST00000303395	human	ensembl	74_37	-1	known	missense	c.4865	p.A1622V	1.000	pfam_Ion_trans_dom,prints_PKD_2	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_a1su,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN1A	HGNC	ENSG00000144285				96	0	0	63	11	14.8649
SCN9A	0	genome.wustl.edu	37	2	167133605	167133605	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	167133605	167133605	A	T	SNP	SCN9A	ENST00000303354	human	ensembl	74_37	-1	known	missense	c.2765	p.F922Y	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN9A	HGNC	ENSG00000169432				210	0	0	161	16	9.03955
XIRP2	0	genome.wustl.edu	37	2	168104512	168104512	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	168104512	168104512	A	G	SNP	XIRP2	ENST00000295237	human	ensembl	74_37	+1	known	missense	c.6610	p.I2204V	0.000	NULL	pfam_Actin-binding_Xin_repeat	-	no_errors	XIRP2	HGNC	ENSG00000163092				62	0	0	50	6	10.7143
CERS6	0	genome.wustl.edu	37	2	169313062	169313062	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	169313062	169313062	C	T	SNP	CERS6	ENST00000392687	human	ensembl	74_37	+1	known	missense	c.104	p.A35V	1.000	pirsf_Longevity_assurance_LAG1_LAC1	pfam_TLC-dom,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_TLC-dom,pirsf_Longevity_assurance_LAG1_LAC1,pfscan_TLC-dom,pfscan_Homeobox_dom	-	no_errors	CERS6	HGNC	ENSG00000172292				61	0	0	56	6	9.67742
ABCB11	0	genome.wustl.edu	37	2	169792759	169792759	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	169792759	169792759	G	A	SNP	ABCB11	ENST00000263817	human	ensembl	74_37	-1	known	missense	c.2795	p.A932V	0.686	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCB11	HGNC	ENSG00000073734				56	0	0	29	5	14.7059
DHRS9	0	genome.wustl.edu	37	2	169939959	169939959	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	169939959	169939959	C	G	SNP	DHRS9	ENST00000432060	human	ensembl	74_37	+1	known	missense	c.614	p.T205R	1.000	pfam_DH_sc/Rdtase_SDR	pfam_DH_sc/Rdtase_SDR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	DHRS9	HGNC	ENSG00000073737				110	0	0	90	11	10.8911
DHRS9	0	genome.wustl.edu	37	2	169940033	169940033	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	169940033	169940033	G	A	SNP	DHRS9	ENST00000432060	human	ensembl	74_37	+1	known	missense	c.688	p.A230T	0.928	pfam_DH_sc/Rdtase_SDR	pfam_DH_sc/Rdtase_SDR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	DHRS9	HGNC	ENSG00000073737				76	0	0	60	4	6.25
LRP2	0	genome.wustl.edu	37	2	170012784	170012784	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	170012784	170012784	C	A	SNP	LRP2	ENST00000263816	human	ensembl	74_37	-1	known	missense	c.12151	p.G4051C	1.000	superfamily_Growth_fac_rcpt_N_dom	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479				114	1	0.869565	109	12	9.91736
LRP2	0	genome.wustl.edu	37	2	170034315	170034315	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	170034315	170034315	A	G	SNP	LRP2	ENST00000263816	human	ensembl	74_37	-1	known	missense	c.10391	p.I3464T	0.192	superfamily_Growth_fac_rcpt_N_dom	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479				262	0	0	231	22	8.69565
LRP2	0	genome.wustl.edu	37	2	170066149	170066149	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	170066149	170066149	G	A	SNP	LRP2	ENST00000263816	human	ensembl	74_37	-1	known	nonsense	c.6283	p.R2095*	1.000	smart_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479				39	0	0	31	5	13.8889
LRP2	0	genome.wustl.edu	37	2	170097855	170097855	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	170097855	170097855	A	G	SNP	LRP2	ENST00000263816	human	ensembl	74_37	-1	known	missense	c.3688	p.C1230R	1.000	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479				150	0	0	159	12	7.01754
LRP2	0	genome.wustl.edu	37	2	170115570	170115570	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	170115570	170115570	A	C	SNP	LRP2	ENST00000263816	human	ensembl	74_37	-1	known	missense	c.2478	p.N826K	1.000	smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479				139	0	0	99	7	6.60377
LRP2	0	genome.wustl.edu	37	2	170135946	170135946	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	170135946	170135946	G	A	SNP	LRP2	ENST00000263816	human	ensembl	74_37	-1	known	missense	c.1501	p.R501W	0.559	pfam_LDLR_classB_rpt,smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479				170	0	0	129	30	18.8679
PPIG	0	genome.wustl.edu	37	2	170489776	170489776	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	170489776	170489776	A	G	SNP	PPIG	ENST00000462903	human	ensembl	74_37	+1	putative	missense	c.1036	p.R346G	0.052	NULL	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	PPIG	HGNC	ENSG00000138398				54	0	0	31	4	11.4286
MYO3B	0	genome.wustl.edu	37	2	171256774	171256774	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	171256774	171256774	A	G	SNP	MYO3B	ENST00000334231	human	ensembl	74_37	+1	known	missense	c.1895	p.Q632R	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_Prot_kinase_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO3B	HGNC	ENSG00000071909				170	0	0	125	41	24.6988
GAD1	0	genome.wustl.edu	37	2	171702573	171702573	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	171702573	171702573	G	T	SNP	GAD1	ENST00000358196	human	ensembl	74_37	+1	known	missense	c.1002	p.K334N	1.000	pfam_PyrdxlP-dep_de-COase,pfam_Aminotrans_V/Cys_dSase,pfam_ArAA_b-elim_lyase/Thr_aldolase,superfamily_PyrdxlP-dep_Trfase	pfam_PyrdxlP-dep_de-COase,pfam_Aminotrans_V/Cys_dSase,pfam_ArAA_b-elim_lyase/Thr_aldolase,superfamily_PyrdxlP-dep_Trfase	-	no_errors	GAD1	HGNC	ENSG00000128683				98	0	0	64	7	9.85915
DCAF17	0	genome.wustl.edu	37	2	172330389	172330389	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	172330389	172330389	T	A	SNP	DCAF17	ENST00000375255	human	ensembl	74_37	+1	known	missense	c.995	p.I332N	1.000	NULL	NULL	-	no_errors	DCAF17	HGNC	ENSG00000115827				47	0	0	33	5	13.1579
PDK1	0	genome.wustl.edu	37	2	173457701	173457701	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	173457701	173457701	C	T	SNP	PDK1	ENST00000282077	human	ensembl	74_37	+1	known	silent	c.1095	p.Y365	1.000	pfam_HATPase_ATP-bd,superfamily_HATPase_ATP-bd,smart_HATPase_ATP-bd,pfscan_Sig_transdc_His_kinase_core	pfam_BCDHK/PDK_N,pfam_HATPase_ATP-bd,superfamily_BCDHK/PDK_N,superfamily_HATPase_ATP-bd,smart_HATPase_ATP-bd,pfscan_Sig_transdc_His_kinase_core	-	no_errors	PDK1	HGNC	ENSG00000152256				152	0	0	96	28	22.5806
RAPGEF4	0	genome.wustl.edu	37	2	173891823	173891823	+	Nonsense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	173891823	173891823	T	A	SNP	RAPGEF4	ENST00000397081	human	ensembl	74_37	+1	known	nonsense	c.2394	p.Y798*	1.000	pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_RasGRF_CDC25,pfam_cNMP-bd_dom,pfam_DEP_dom,pfam_Ras-like_Gua-exchang_fac_N,pfam_Ras-assoc,superfamily_Ras_GEF_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_DEP_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_cNMP-bd_dom,pfscan_DEP_dom,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N,prints_cAMP/cGMP_kin	-	no_errors	RAPGEF4	HGNC	ENSG00000091428				118	0	0	79	10	11.236
ZAK	0	genome.wustl.edu	37	2	174130855	174130855	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	174130855	174130855	A	G	SNP	ZAK	ENST00000375213	human	ensembl	74_37	+1	known	missense	c.1780	p.N594D	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SAM_type1,pfam_SAM_2,superfamily_Kinase-like_dom,superfamily_SAM/pointed,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,pfscan_SAM,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MLTK	Uniprot_gn	ENSG00000091436				23	0	0	18	5	21.7391
ZAK	0	genome.wustl.edu	37	2	174131092	174131092	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	174131092	174131092	T	A	SNP	ZAK	ENST00000375213	human	ensembl	74_37	+1	known	missense	c.2017	p.Y673N	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SAM_type1,pfam_SAM_2,superfamily_Kinase-like_dom,superfamily_SAM/pointed,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,pfscan_SAM,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MLTK	Uniprot_gn	ENSG00000091436				110	0	0	99	11	10
CDCA7	0	genome.wustl.edu	37	2	174229673	174229673	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	174229673	174229673	T	C	SNP	CDCA7	ENST00000306721	human	ensembl	74_37	+1	known	missense	c.850	p.Y284H	1.000	NULL	pfam_Znf-4CXXC_R1	-	no_errors	CDCA7	HGNC	ENSG00000144354				68	0	0	46	8	14.8148
CIR1	0	genome.wustl.edu	37	2	175246441	175246441	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	175246441	175246441	C	A	SNP	CIR1	ENST00000342016	human	ensembl	74_37	-1	known	missense	c.232	p.A78S	1.000	NULL	pfam_CIR_N_dom,superfamily_Znf_CCHC	-	no_errors	CIR1	HGNC	ENSG00000138433				455	0	0	307	18	5.53846
CHN1	0	genome.wustl.edu	37	2	175676303	175676303	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	175676303	175676303	T	C	SNP	CHN1	ENST00000409900	human	ensembl	74_37	-1	known	silent	c.900	p.E300	1.000	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pirsf_N-chimaerin,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_SH2,superfamily_Rho_GTPase_activation_prot,smart_SH2,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pirsf_N-chimaerin,pfscan_SH2,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom,prints_DAG/PE-bd	-	no_errors	CHN1	HGNC	ENSG00000128656				52	0	0	31	3	8.82353
ATP5G3	0	genome.wustl.edu	37	2	176046086	176046086	+	Silent	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	176046086	176046086	A	T	SNP	ATP5G3	ENST00000284727	human	ensembl	74_37	-1	known	silent	c.36	p.S12	0.998	NULL	pfam_ATPase_proteolipid_c_like_dom,superfamily_ATPase_proteolipid_c_like_dom,prints_ATPase_F0-cplx_csu	-	no_errors	ATP5G3	HGNC	ENSG00000154518				31	0	0	29	8	21.6216
RAD51AP2	0	genome.wustl.edu	37	2	17697217	17697217	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	17697217	17697217	A	G	SNP	RAD51AP2	ENST00000399080	human	ensembl	74_37	-1	known	silent	c.2466	p.S822	0.759	NULL	NULL	-	no_errors	RAD51AP2	HGNC	ENSG00000214842				96	0	0	76	7	8.43373
HOXD8	0	genome.wustl.edu	37	2	176995452	176995452	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	176995452	176995452	C	G	SNP	HOXD8	ENST00000313173	human	ensembl	74_37	+1	known	missense	c.358	p.P120A	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,prints_Homeobox_metazoa,pfscan_Homeobox_dom	-	no_errors	HOXD8	HGNC	ENSG00000175879				141	0	0	116	11	8.66142
MTX2	0	genome.wustl.edu	37	2	177202275	177202275	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	177202275	177202275	A	G	SNP	MTX2	ENST00000249442	human	ensembl	74_37	+1	known	silent	c.675	p.T225	0.716	superfamily_Glutathione-S-Trfase_C-like	pfam_Sam37/metaxin,superfamily_Glutathione-S-Trfase_C-like,superfamily_Thioredoxin-like_fold	-	no_errors	MTX2	HGNC	ENSG00000128654				222	0	0	157	13	7.64706
TTC30B	0	genome.wustl.edu	37	2	178415951	178415951	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	178415951	178415951	T	C	SNP	TTC30B	ENST00000408939	human	ensembl	74_37	-1	known	missense	c.1541	p.N514S	1.000	NULL	smart_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC30B	HGNC	ENSG00000196659				241	0	0	174	17	8.90052
TTC30B	0	genome.wustl.edu	37	2	178416839	178416839	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	178416839	178416839	C	T	SNP	TTC30B	ENST00000408939	human	ensembl	74_37	-1	known	missense	c.653	p.G218D	1.000	smart_TPR_repeat,pfscan_TPR-contain_dom	smart_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC30B	HGNC	ENSG00000196659				68	0	0	58	5	7.93651
SMC6	0	genome.wustl.edu	37	2	17898096	17898096	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	17898096	17898096	A	G	SNP	SMC6	ENST00000381272	human	ensembl	74_37	-1	known	missense	c.1336	p.F446L	0.105	superfamily_P-loop_NTPase	superfamily_P-loop_NTPase	-	no_errors	SMC6	HGNC	ENSG00000163029				136	0	0	90	8	8.16327
OSBPL6	0	genome.wustl.edu	37	2	179201135	179201135	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	179201135	179201135	G	A	SNP	OSBPL6	ENST00000315022	human	ensembl	74_37	+1	known	silent	c.702	p.S234	0.020	NULL	pfam_Oxysterol-bd,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL6	HGNC	ENSG00000079156				190	0	0	159	18	10.1695
DFNB59	0	genome.wustl.edu	37	2	179325710	179325710	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	179325710	179325710	T	C	SNP	DFNB59	ENST00000375129	human	ensembl	74_37	+1	known	silent	c.768	p.N256	0.887	NULL	pfam_Gasdermin	-	no_errors	DFNB59	HGNC	ENSG00000204311				170	0	0	123	11	8.20896
FKBP7	0	genome.wustl.edu	37	2	179334426	179334426	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	179334426	179334426	A	T	SNP	FKBP7	ENST00000424785	human	ensembl	74_37	-1	known	missense	c.460	p.F154I	1.000	NULL	pfam_PPIase_FKBP_dom,pfscan_EF_hand_dom,pfscan_PPIase_FKBP_dom	-	no_errors	FKBP7	HGNC	ENSG00000079150				191	0	0	133	13	8.90411
TTN	0	genome.wustl.edu	37	2	179393421	179393421	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	179393421	179393421	A	G	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.99353	p.V33118A	0.993	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				45	0	0	26	3	10.3448
TTN	0	genome.wustl.edu	37	2	179395728	179395728	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	179395728	179395728	T	C	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.97910	p.N32637S	1.000	pfam_Ig_I-set,pfam_Ig_V-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				375	0	0	320	18	5.32544
TTN	0	genome.wustl.edu	37	2	179402473	179402473	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	179402473	179402473	C	T	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.91757	p.R30586H	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				86	0	0	69	6	8
TTN	0	genome.wustl.edu	37	2	179412969	179412969	+	Silent	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	179412969	179412969	G	T	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	silent	c.85680	p.S28560	1.000	pfam_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				224	1	0.444444	178	18	9.18367
TTN	0	genome.wustl.edu	37	2	179414486	179414486	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	179414486	179414486	A	G	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.84259	p.Y28087H	1.000	pfam_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				96	0	0	71	24	25.2632
TTN	0	genome.wustl.edu	37	2	179414849	179414849	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	179414849	179414849	A	G	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	silent	c.84012	p.N28004	0.991	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				284	0	0	193	24	11.0599
TTN	0	genome.wustl.edu	37	2	179414978	179414978	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	179414978	179414978	G	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	silent	c.83883	p.G27961	0.987	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				132	0	0	110	13	10.5691
TTN	0	genome.wustl.edu	37	2	179415883	179415883	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	179415883	179415883	T	C	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.83671	p.I27891V	1.000	pfam_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				72	0	0	49	10	16.9492
TTN	0	genome.wustl.edu	37	2	179417047	179417047	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	179417047	179417047	C	T	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.82876	p.A27626T	1.000	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				116	0	0	96	7	6.79612
TTN	0	genome.wustl.edu	37	2	179418786	179418786	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	179418786	179418786	T	C	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	silent	c.81348	p.L27116	0.005	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				230	0	0	194	14	6.73077
TTN	0	genome.wustl.edu	37	2	179425685	179425685	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	179425685	179425685	C	T	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.77470	p.A25824T	0.998	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				136	0	0	108	10	8.47458
TTN	0	genome.wustl.edu	37	2	179429031	179429031	+	Silent	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	179429031	179429031	A	C	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	silent	c.74124	p.S24708	0.195	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				167	0	0	133	15	10.1351
TTN	0	genome.wustl.edu	37	2	179432851	179432851	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	179432851	179432851	G	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.70304	p.S23435F	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				119	0	0	132	7	5.03597
TTN	0	genome.wustl.edu	37	2	179437140	179437140	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	179437140	179437140	G	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	silent	c.66015	p.C22005	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				83	0	0	76	8	9.52381
TTN	0	genome.wustl.edu	37	2	179437289	179437289	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	179437289	179437289	G	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	nonsense	c.65866	p.Q21956*	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				103	0	0	98	9	8.41121
TTN	0	genome.wustl.edu	37	2	179442036	179442036	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	179442036	179442036	T	C	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.61322	p.Y20441C	1.000	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				91	0	0	66	9	12
TTN	0	genome.wustl.edu	37	2	179447037	179447037	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	179447037	179447037	G	T	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.58442	p.A19481D	1.000	superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				80	0	0	56	5	8.19672
TTN	0	genome.wustl.edu	37	2	179456053	179456053	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	179456053	179456053	T	C	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	silent	c.52695	p.S17565	1.000	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				499	0	0	361	43	10.6436
TTN	0	genome.wustl.edu	37	2	179456447	179456447	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	179456447	179456447	T	C	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	silent	c.52395	p.L17465	0.998	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				223	0	0	188	10	5.05051
TTN	0	genome.wustl.edu	37	2	179457902	179457902	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	179457902	179457902	A	G	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.51329	p.I17110T	1.000	superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				138	0	0	109	12	9.91736
TTN	0	genome.wustl.edu	37	2	179462392	179462392	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	179462392	179462392	A	G	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	silent	c.49713	p.I16571	1.000	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				140	0	0	92	12	11.5385
TTN	0	genome.wustl.edu	37	2	179463262	179463262	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	179463262	179463262	T	C	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.49378	p.K16460E	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				82	0	0	61	13	17.5676
TTN	0	genome.wustl.edu	37	2	179463329	179463329	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	179463329	179463329	T	C	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	silent	c.49311	p.A16437	0.688	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				59	0	0	50	5	9.09091
TTN	0	genome.wustl.edu	37	2	179464134	179464134	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	179464134	179464134	A	G	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.48682	p.S16228P	1.000	pfam_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				78	0	0	63	13	17.1053
TTN-AS1	0	genome.wustl.edu	37	2	179469685	179469685	+	RNA	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	179469685	179469685	T	G	SNP	TTN-AS1	ENST00000419746	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TTN-AS1	HGNC	ENSG00000237298				164	0	0	113	35	23.6486
TTN	0	genome.wustl.edu	37	2	179495630	179495630	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	179495630	179495630	C	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.36351	p.E12117D	1.000	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				115	1	0.862069	89	7	7.29167
TTN	0	genome.wustl.edu	37	2	179495656	179495656	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	179495656	179495656	G	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	silent	c.36325	p.L12109	0.997	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				84	0	0	61	24	28.2353
TTN	0	genome.wustl.edu	37	2	179517022	179517022	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	179517022	179517022	A	G	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	silent	c.31878	p.P10626	0.431	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				419	0	0	310	23	6.90691
TTN	0	genome.wustl.edu	37	2	179542934	179542934	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	179542934	179542934	C	T	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	silent	c.30180	p.V10060	0.998	pfam_PPAK_motif,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				178	0	0	113	8	6.61157
TTN	0	genome.wustl.edu	37	2	179544994	179544994	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	179544994	179544994	T	C	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	silent	c.29673	p.A9891	0.366	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				248	0	0	185	14	7.03518
TTN	0	genome.wustl.edu	37	2	179547450	179547450	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	179547450	179547450	T	G	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.29336	p.Y9779S	0.256	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				266	0	0	211	16	7.04846
TTN	0	genome.wustl.edu	37	2	179554557	179554557	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	179554557	179554557	T	C	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.28097	p.E9366G	0.981	pfam_PPAK_motif,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				259	0	0	185	12	6.09137
TTN	0	genome.wustl.edu	37	2	179571293	179571293	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	179571293	179571293	G	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	nonsense	c.25576	p.R8526*	0.949	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				221	0	0	138	41	22.905
TTN	0	genome.wustl.edu	37	2	179577959	179577959	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	179577959	179577959	T	C	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.23170	p.S7724G	0.994	pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				42	0	0	35	3	7.89474
TTN	0	genome.wustl.edu	37	2	179578862	179578862	+	Silent	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	179578862	179578862	A	T	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	silent	c.22791	p.V7597	0.985	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				68	0	0	59	7	10.6061
TTN	0	genome.wustl.edu	37	2	179578874	179578874	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	179578874	179578874	T	C	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	silent	c.22779	p.E7593	1.000	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				80	0	0	51	20	28.169
TTN	0	genome.wustl.edu	37	2	179589031	179589031	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	179589031	179589031	T	G	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.17339	p.N5780T	1.000	pfam_Ig_I-set,pfam_Ig_V-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				69	0	0	56	9	13.8462
TTN	0	genome.wustl.edu	37	2	179592343	179592343	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	179592343	179592343	G	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	silent	c.16230	p.S5410	1.000	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				308	0	0	222	15	6.32911
TTN	0	genome.wustl.edu	37	2	179594254	179594254	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	179594254	179594254	A	G	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.14897	p.V4966A	1.000	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				118	0	0	92	18	16.3636
TTN	0	genome.wustl.edu	37	2	179594596	179594596	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	179594596	179594596	T	C	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	silent	c.14652	p.Q4884	0.963	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_V-set_subgr,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				66	0	0	57	3	5
TTN	0	genome.wustl.edu	37	2	179595492	179595492	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	179595492	179595492	T	C	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.14036	p.K4679R	1.000	pfam_Ig_I-set,superfamily_RNaseH-like_dom,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				146	0	0	93	6	6.06061
TTN-AS1	0	genome.wustl.edu	37	2	179597786	179597786	+	Splice_Site	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	179597786	179597786	T	C	SNP	TTN-AS1	ENST00000582847	human	ensembl	74_37	+1	known	splice_site	c.NULL	NULL	0.000	-	-	-	no_errors	TTN-AS1	HGNC	ENSG00000237298				55	0	0	38	7	15.5556
TTN	0	genome.wustl.edu	37	2	179600589	179600589	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	179600589	179600589	T	C	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.10852	p.R3618G	0.996	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				100	1	0.990099	82	9	9.89011
TTN	0	genome.wustl.edu	37	2	179610654	179610654	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	179610654	179610654	C	A	SNP	TTN	ENST00000360870	human	ensembl	74_37	-1	known	missense	c.16473	p.M5491I	0.133	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Titin_Z,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				121	0	0	103	6	5.50459
TTN	0	genome.wustl.edu	37	2	179616245	179616245	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	179616245	179616245	C	A	SNP	TTN	ENST00000360870	human	ensembl	74_37	-1	known	nonsense	c.10882	p.E3628*	0.780	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Titin_Z,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				212	0	0	171	11	6.04396
TTN	0	genome.wustl.edu	37	2	179621295	179621295	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	179621295	179621295	T	C	SNP	TTN	ENST00000342175	human	ensembl	74_37	-1	known	silent	c.10395	p.A3465	0.000	superfamily_RNaseH-like_dom	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				108	0	0	79	8	9.1954
GEN1	0	genome.wustl.edu	37	2	17962934	17962934	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	17962934	17962934	A	G	SNP	GEN1	ENST00000317402	human	ensembl	74_37	+1	known	missense	c.2455	p.R819G	0.007	NULL	pfam_XPG-I_dom,pfam_XPG_DNA_repair_N,superfamily_5-3_exonuclease_C,smart_XPG_DNA_repair_N,smart_XPG-I_dom,smart_HhH2,prints_XPG/Rad2	-	no_errors	GEN1	HGNC	ENSG00000178295				69	0	0	45	14	23.7288
GEN1	0	genome.wustl.edu	37	2	17962986	17962986	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	17962986	17962986	G	T	SNP	GEN1	ENST00000317402	human	ensembl	74_37	+1	known	missense	c.2507	p.G836V	0.000	NULL	pfam_XPG-I_dom,pfam_XPG_DNA_repair_N,superfamily_5-3_exonuclease_C,smart_XPG_DNA_repair_N,smart_XPG-I_dom,smart_HhH2,prints_XPG/Rad2	-	no_errors	GEN1	HGNC	ENSG00000178295				71	0	0	32	5	13.5135
TTN	0	genome.wustl.edu	37	2	179642221	179642221	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	179642221	179642221	T	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.4571	p.D1524V	1.000	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				63	0	0	51	6	10.5263
CCDC141	0	genome.wustl.edu	37	2	179710393	179710393	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	179710393	179710393	G	C	SNP	CCDC141	ENST00000420890	human	ensembl	74_37	-1	known	missense	c.3434	p.A1145G	0.001	NULL	pfam_Ig_I-set,pfam_Spectrin_repeat,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	CCDC141	HGNC	ENSG00000163492				49	0	0	23	6	20.6897
CCDC141	0	genome.wustl.edu	37	2	179730575	179730575	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	179730575	179730575	C	T	SNP	CCDC141	ENST00000420890	human	ensembl	74_37	-1	known	silent	c.2643	p.K881	0.167	NULL	pfam_Ig_I-set,pfam_Spectrin_repeat,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	CCDC141	HGNC	ENSG00000163492				356	0	0	303	28	8.45921
SESTD1	0	genome.wustl.edu	37	2	179982318	179982318	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	179982318	179982318	G	A	SNP	SESTD1	ENST00000428443	human	ensembl	74_37	-1	known	nonsense	c.1465	p.R489*	1.000	NULL	superfamily_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	-	no_errors	SESTD1	HGNC	ENSG00000187231				115	0	0	66	15	18.5185
CWC22	0	genome.wustl.edu	37	2	180815294	180815294	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	180815294	180815294	C	A	SNP	CWC22	ENST00000295749	human	ensembl	74_37	-1	known	missense	c.2085	p.E695D	0.355	NULL	pfam_MIF4G-like_typ-3,pfam_Initiation_fac_eIF4g_MI,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3,smart_Initiation_fac_eIF4g_MI	-	no_errors	CWC22	HGNC	ENSG00000163510				58	0	0	49	5	9.25926
KCNS3	0	genome.wustl.edu	37	2	18112978	18112978	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	18112978	18112978	G	A	SNP	KCNS3	ENST00000304101	human	ensembl	74_37	+1	known	missense	c.703	p.G235R	0.043	pfam_Ion_trans_dom,prints_K_chnl	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv2	-	no_errors	KCNS3	HGNC	ENSG00000170745				129	0	0	85	30	26.087
ITGA4	0	genome.wustl.edu	37	2	182394352	182394352	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	182394352	182394352	C	T	SNP	ITGA4	ENST00000397033	human	ensembl	74_37	+1	known	silent	c.2515	p.L839	0.899	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA4	HGNC	ENSG00000115232				100	0	0	65	11	14.4737
CERKL	0	genome.wustl.edu	37	2	182412405	182412405	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	182412405	182412405	C	T	SNP	CERKL	ENST00000339098	human	ensembl	74_37	-1	known	missense	c.1286	p.S429N	1.000	NULL	pfam_Diacylglycerol_kinase_cat_dom	-	no_errors	CERKL	HGNC	ENSG00000188452				132	0	0	115	15	11.5385
NEUROD1	0	genome.wustl.edu	37	2	182543447	182543447	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	182543447	182543447	G	A	SNP	NEUROD1	ENST00000295108	human	ensembl	74_37	-1	known	silent	c.141	p.N47	0.008	pirsf_TF_bHLH_NeuroD	pfam_Neurogenic_DUF,pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pirsf_TF_bHLH_NeuroD,pfscan_bHLH_dom	-	no_errors	NEUROD1	HGNC	ENSG00000162992				17	0	0	19	6	24
PDE1A	0	genome.wustl.edu	37	2	183094743	183094743	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	183094743	183094743	G	A	SNP	PDE1A	ENST00000456212	human	ensembl	74_37	-1	known	missense	c.713	p.T238I	1.000	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom	pfam_PDEase_catalytic_dom,pfam_PDEase_N,superfamily_GRIP,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE1A	HGNC	ENSG00000115252				130	0	0	74	19	20.4301
NCKAP1	0	genome.wustl.edu	37	2	183848065	183848065	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	183848065	183848065	C	T	SNP	NCKAP1	ENST00000360982	human	ensembl	74_37	-1	known	silent	c.1068	p.L356	1.000	pfam_Nck-associated_protein-1	pfam_Nck-associated_protein-1	-	no_errors	NCKAP1	HGNC	ENSG00000061676				90	0	0	58	6	9.375
ZNF804A	0	genome.wustl.edu	37	2	185463792	185463792	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	185463792	185463792	A	G	SNP	ZNF804A	ENST00000302277	human	ensembl	74_37	+1	known	missense	c.106	p.T36A	1.000	NULL	pfam_Znf_C2H2_jaz	-	no_errors	ZNF804A	HGNC	ENSG00000170396				54	0	0	53	3	5.35714
ZNF804A	0	genome.wustl.edu	37	2	185800760	185800760	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	185800760	185800760	G	A	SNP	ZNF804A	ENST00000302277	human	ensembl	74_37	+1	known	missense	c.637	p.G213S	0.999	NULL	pfam_Znf_C2H2_jaz	-	no_errors	ZNF804A	HGNC	ENSG00000170396				105	0	0	78	8	9.30233
FSIP2	0	genome.wustl.edu	37	2	186670650	186670650	+	Silent	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	186670650	186670650	T	A	SNP	FSIP2	ENST00000343098	human	ensembl	74_37	+1	known	silent	c.16884	p.V5628	0.001	NULL	NULL	-	no_errors	FSIP2	HGNC	ENSG00000188738				106	0	0	68	7	9.33333
FSIP2	0	genome.wustl.edu	37	2	186671431	186671431	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	186671431	186671431	T	C	SNP	FSIP2	ENST00000343098	human	ensembl	74_37	+1	known	missense	c.17665	p.F5889L	0.922	NULL	NULL	-	no_errors	FSIP2	HGNC	ENSG00000188738				68	0	0	49	5	9.25926
FAM171B	0	genome.wustl.edu	37	2	187604970	187604970	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	187604970	187604970	T	C	SNP	FAM171B	ENST00000304698	human	ensembl	74_37	+1	known	missense	c.254	p.L85S	1.000	pfam_Uncharacterised_FAM171	pfam_Uncharacterised_FAM171	-	no_errors	FAM171B	HGNC	ENSG00000144369				50	0	0	51	3	5.55556
ZSWIM2	0	genome.wustl.edu	37	2	187693278	187693278	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	187693278	187693278	A	G	SNP	ZSWIM2	ENST00000295131	human	ensembl	74_37	-1	known	silent	c.1335	p.P445	0.018	NULL	pfam_Znf_SWIM,pfam_Znf_ZZ,smart_Znf_RING,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Znf_ZZ	-	no_errors	ZSWIM2	HGNC	ENSG00000163012				96	0	0	61	7	10.2941
COL5A2	0	genome.wustl.edu	37	2	189933518	189933518	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	189933518	189933518	A	G	SNP	COL5A2	ENST00000374866	human	ensembl	74_37	-1	known	silent	c.1251	p.G417	0.923	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_VWF_C,superfamily_Fibrinogen_a/b/g_C_dom,smart_VWF_C,smart_Fib_collagen_C,pfscan_VWF_C	-	no_errors	COL5A2	HGNC	ENSG00000204262				62	0	0	47	6	11.3208
COL5A2	0	genome.wustl.edu	37	2	189948739	189948739	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	189948739	189948739	G	A	SNP	COL5A2	ENST00000374866	human	ensembl	74_37	-1	known	missense	c.823	p.P275S	0.997	pfam_Collagen	pfam_Collagen,pfam_Fib_collagen_C,pfam_VWF_C,superfamily_Fibrinogen_a/b/g_C_dom,smart_VWF_C,smart_Fib_collagen_C,pfscan_VWF_C	-	no_errors	COL5A2	HGNC	ENSG00000204262				78	0	0	57	6	9.52381
ORMDL1	0	genome.wustl.edu	37	2	190647275	190647275	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	190647275	190647275	A	G	SNP	ORMDL1	ENST00000325795	human	ensembl	74_37	-1	known	missense	c.47	p.V16A	1.000	pfam_ORMDL,pirsf_ORMDL	pfam_ORMDL,pirsf_ORMDL	-	no_errors	ORMDL1	HGNC	ENSG00000128699				114	0	0	87	5	5.43478
MSTN	0	genome.wustl.edu	37	2	190927276	190927276	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	190927276	190927276	A	G	SNP	MSTN	ENST00000260950	human	ensembl	74_37	-1	known	missense	c.47	p.I16T	1.000	NULL	pfam_TGF-b_N,pfam_TGF-b_C,smart_TGF-b_C	-	no_errors	MSTN	HGNC	ENSG00000138379				134	0	0	94	8	7.84314
NAB1	0	genome.wustl.edu	37	2	191524184	191524184	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	191524184	191524184	A	G	SNP	NAB1	ENST00000337386	human	ensembl	74_37	+1	known	missense	c.282	p.I94M	0.995	NULL	pfam_Nab1_C,pfam_NAB_co-repressor_dom,pfam_Nab_N,superfamily_SAM/pointed	-	no_errors	NAB1	HGNC	ENSG00000138386				70	0	0	57	5	8.06452
NAB1	0	genome.wustl.edu	37	2	191524446	191524446	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	191524446	191524446	G	A	SNP	NAB1	ENST00000337386	human	ensembl	74_37	+1	known	missense	c.544	p.A182T	0.975	pfam_NAB_co-repressor_dom	pfam_Nab1_C,pfam_NAB_co-repressor_dom,pfam_Nab_N,superfamily_SAM/pointed	-	no_errors	NAB1	HGNC	ENSG00000138386				25	0	0	26	2	7.14286
GLS	0	genome.wustl.edu	37	2	191792056	191792056	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	191792056	191792056	G	A	SNP	GLS	ENST00000320717	human	ensembl	74_37	+1	known	missense	c.1273	p.E425K	1.000	pfam_Glutaminase,superfamily_Beta-lactam/transpept-like,tigrfam_Glutaminase	pfam_Glutaminase,pfam_Ankyrin_rpt,superfamily_Beta-lactam/transpept-like,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,tigrfam_Glutaminase	-	no_errors	GLS	HGNC	ENSG00000115419				101	0	0	68	5	6.84932
GLS	0	genome.wustl.edu	37	2	191796330	191796330	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	191796330	191796330	A	T	SNP	GLS	ENST00000320717	human	ensembl	74_37	+1	known	missense	c.1617	p.K539N	1.000	NULL	pfam_Glutaminase,pfam_Ankyrin_rpt,superfamily_Beta-lactam/transpept-like,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,tigrfam_Glutaminase	-	no_errors	GLS	HGNC	ENSG00000115419				96	0	0	52	5	8.77193
GLS	0	genome.wustl.edu	37	2	191819388	191819388	+	Splice_Site	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	191819388	191819388	T	C	SNP	GLS	ENST00000320717	human	ensembl	74_37	+1	known	splice_site	c.1789+2	e16+2	1.000	-	-	-	no_errors	GLS	HGNC	ENSG00000115419				77	0	0	63	8	11.2676
STAT1	0	genome.wustl.edu	37	2	191863025	191863025	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	191863025	191863025	G	A	SNP	STAT1	ENST00000361099	human	ensembl	74_37	-1	known	missense	c.551	p.T184I	0.919	pfam_STAT_TF_alpha,superfamily_STAT_TF_coiled-coil	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_STAT1_TAZ2-bd_C,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,pfscan_SH2	-	no_errors	STAT1	HGNC	ENSG00000115415				134	0	0	83	19	18.6275
STAT4	0	genome.wustl.edu	37	2	191937856	191937856	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	191937856	191937856	G	A	SNP	STAT4	ENST00000358470	human	ensembl	74_37	-1	known	missense	c.433	p.H145Y	0.991	pfam_STAT_TF_alpha,superfamily_STAT_TF_coiled-coil	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,pfscan_SH2	-	no_errors	STAT4	HGNC	ENSG00000138378				313	0	0	221	28	11.245
STAT4	0	genome.wustl.edu	37	2	192011389	192011389	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	192011389	192011389	T	C	SNP	STAT4	ENST00000358470	human	ensembl	74_37	-1	known	missense	c.223	p.K75E	1.000	pfam_STAT_TF_prot_interaction,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,pfscan_SH2	-	no_errors	STAT4	HGNC	ENSG00000138378				62	0	0	43	4	8.51064
MYO1B	0	genome.wustl.edu	37	2	192255027	192255027	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	192255027	192255027	A	C	SNP	MYO1B	ENST00000304164	human	ensembl	74_37	+1	known	missense	c.1791	p.K597N	0.993	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO1B	HGNC	ENSG00000128641				82	0	0	70	6	7.89474
SDPR	0	genome.wustl.edu	37	2	192700777	192700777	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	192700777	192700777	A	T	SNP	SDPR	ENST00000304141	human	ensembl	74_37	-1	known	missense	c.1150	p.S384T	0.004	NULL	NULL	-	no_errors	SDPR	HGNC	ENSG00000168497				136	0	0	112	12	9.67742
SLC39A10	0	genome.wustl.edu	37	2	196573391	196573391	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	196573391	196573391	A	G	SNP	SLC39A10	ENST00000359634	human	ensembl	74_37	+1	known	silent	c.1398	p.G466	0.995	pfam_ZIP	pfam_ZIP	-	no_errors	SLC39A10	HGNC	ENSG00000196950				62	0	0	41	3	6.81818
DNAH7	0	genome.wustl.edu	37	2	196671554	196671554	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	196671554	196671554	T	C	SNP	DNAH7	ENST00000312428	human	ensembl	74_37	-1	known	silent	c.10086	p.E3362	0.269	pfam_Dynein_heavy_dom	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,superfamily_P-loop_NTPase,superfamily_Signal_recog_particle_SRP9/14,smart_AAA+_ATPase,pfscan_EF_hand_dom	-	no_errors	DNAH7	HGNC	ENSG00000118997				53	0	0	51	3	5.55556
DNAH7	0	genome.wustl.edu	37	2	196759893	196759893	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	196759893	196759893	T	A	SNP	DNAH7	ENST00000312428	human	ensembl	74_37	-1	known	missense	c.4703	p.D1568V	1.000	superfamily_P-loop_NTPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,superfamily_P-loop_NTPase,superfamily_Signal_recog_particle_SRP9/14,smart_AAA+_ATPase,pfscan_EF_hand_dom	-	no_errors	DNAH7	HGNC	ENSG00000118997				77	0	0	44	5	10.2041
DNAH7	0	genome.wustl.edu	37	2	196883924	196883924	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	196883924	196883924	G	A	SNP	DNAH7	ENST00000312428	human	ensembl	74_37	-1	known	missense	c.839	p.A280V	0.974	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,superfamily_P-loop_NTPase,superfamily_Signal_recog_particle_SRP9/14,smart_AAA+_ATPase,pfscan_EF_hand_dom	-	no_errors	DNAH7	HGNC	ENSG00000118997				138	0	0	95	9	8.65385
STK17B	0	genome.wustl.edu	37	2	197004488	197004488	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	197004488	197004488	T	C	SNP	STK17B	ENST00000263955	human	ensembl	74_37	-1	known	missense	c.692	p.H231R	0.995	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	STK17B	HGNC	ENSG00000081320				191	0	0	108	8	6.89655
STK17B	0	genome.wustl.edu	37	2	197010665	197010665	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	197010665	197010665	A	C	SNP	STK17B	ENST00000263955	human	ensembl	74_37	-1	known	missense	c.450	p.H150Q	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	STK17B	HGNC	ENSG00000081320				43	0	0	33	5	13.1579
HECW2	0	genome.wustl.edu	37	2	197080627	197080627	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	197080627	197080627	G	A	SNP	HECW2	ENST00000260983	human	ensembl	74_37	-1	known	silent	c.4569	p.F1523	1.000	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,pfam_WW_dom,pfam_C2_dom,superfamily_HECT,superfamily_WW_dom,superfamily_C2_dom,smart_C2_dom,smart_WW_dom,smart_HECT,pfscan_HECT,pfscan_C2_dom,pfscan_WW_dom	-	no_errors	HECW2	HGNC	ENSG00000138411				104	0	0	87	8	8.42105
HECW2	0	genome.wustl.edu	37	2	197183892	197183892	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	197183892	197183892	A	T	SNP	HECW2	ENST00000260983	human	ensembl	74_37	-1	known	missense	c.1722	p.D574E	0.917	NULL	pfam_HECT,pfam_WW_dom,pfam_C2_dom,superfamily_HECT,superfamily_WW_dom,superfamily_C2_dom,smart_C2_dom,smart_WW_dom,smart_HECT,pfscan_HECT,pfscan_C2_dom,pfscan_WW_dom	-	no_errors	HECW2	HGNC	ENSG00000138411				58	0	0	60	6	9.09091
CCDC150	0	genome.wustl.edu	37	2	197584353	197584353	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	197584353	197584353	C	T	SNP	CCDC150	ENST00000389175	human	ensembl	74_37	+1	known	missense	c.2128	p.R710W	0.998	NULL	NULL	-	no_errors	CCDC150	HGNC	ENSG00000144395				47	0	0	32	12	27.2727
GTF3C3	0	genome.wustl.edu	37	2	197634713	197634713	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	197634713	197634713	A	C	SNP	GTF3C3	ENST00000263956	human	ensembl	74_37	-1	known	missense	c.2311	p.F771V	1.000	NULL	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	GTF3C3	HGNC	ENSG00000119041				106	0	0	57	8	12.3077
GTF3C3	0	genome.wustl.edu	37	2	197634743	197634743	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	197634743	197634743	G	A	SNP	GTF3C3	ENST00000263956	human	ensembl	74_37	-1	known	missense	c.2281	p.R761C	1.000	NULL	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	GTF3C3	HGNC	ENSG00000119041				109	0	0	51	11	17.7419
PGAP1	0	genome.wustl.edu	37	2	197767343	197767343	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	197767343	197767343	T	C	SNP	PGAP1	ENST00000354764	human	ensembl	74_37	-1	known	missense	c.773	p.K258R	0.977	pfam_PGAP1-like	pfam_PGAP1-like	-	no_errors	PGAP1	HGNC	ENSG00000197121				102	0	0	65	8	10.9589
ANKRD44	0	genome.wustl.edu	37	2	197878384	197878384	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	197878384	197878384	T	C	SNP	ANKRD44	ENST00000328737	human	ensembl	74_37	-1	known	missense	c.1700	p.D567G	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD44	HGNC	ENSG00000065413				221	2	0.896861	181	13	6.70103
SF3B1	0	genome.wustl.edu	37	2	198273121	198273121	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	198273121	198273121	T	C	SNP	SF3B1	ENST00000335508	human	ensembl	74_37	-1	known	silent	c.1089	p.P363	1.000	pfam_SF3b_su1	pfam_SF3b_su1,superfamily_ARM-type_fold	-	no_errors	SF3B1	HGNC	ENSG00000115524				131	0	0	116	7	5.69106
HSPD1	0	genome.wustl.edu	37	2	198361971	198361971	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	198361971	198361971	T	G	SNP	HSPD1	ENST00000345042	human	ensembl	74_37	-1	known	missense	c.320	p.E107A	1.000	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,prints_Chaprnin_Cpn60,prints_Chaperone_TCP-1,tigrfam_Chaprnin_Cpn60	pfam_Cpn60/TCP-1,superfamily_GroEL-like_apical_dom,superfamily_Cpn60/TCP-1,prints_Chaprnin_Cpn60,prints_Chaperone_TCP-1,tigrfam_Chaprnin_Cpn60	-	no_errors	HSPD1	HGNC	ENSG00000144381				116	0	0	102	8	7.27273
SPATS2L	0	genome.wustl.edu	37	2	201337675	201337675	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	201337675	201337675	A	G	SNP	SPATS2L	ENST00000409755	human	ensembl	74_37	+1	known	missense	c.1271	p.H424R	0.996	NULL	pfam_DUF1387,superfamily_UBA-like	-	no_errors	SPATS2L	HGNC	ENSG00000196141				68	0	0	52	4	7.14286
BZW1	0	genome.wustl.edu	37	2	201685984	201685984	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	201685984	201685984	A	C	SNP	BZW1	ENST00000409600	human	ensembl	74_37	+1	known	missense	c.1184	p.E395A	1.000	pfam_W2_domain,superfamily_ARM-type_fold,smart_W2_domain	pfam_W2_domain,superfamily_ARM-type_fold,smart_W2_domain	-	no_errors	BZW1	HGNC	ENSG00000082153				156	0	0	103	16	13.4454
CLK1	0	genome.wustl.edu	37	2	201726528	201726528	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	201726528	201726528	C	A	SNP	CLK1	ENST00000321356	human	ensembl	74_37	-1	known	nonsense	c.58	p.G20*	0.031	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CLK1	HGNC	ENSG00000013441				139	1	0.714286	132	8	5.71429
PPIL3	0	genome.wustl.edu	37	2	201736019	201736019	+	RNA	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	201736019	201736019	G	T	SNP	PPIL3	ENST00000465823	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	PPIL3	HGNC	ENSG00000240344				47	0	0	19	6	24
CASP10	0	genome.wustl.edu	37	2	202050789	202050789	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	202050789	202050789	T	C	SNP	CASP10	ENST00000286186	human	ensembl	74_37	+1	known	missense	c.289	p.C97R	0.008	pfam_DED,superfamily_DEATH-like_dom,smart_DED,pfscan_DED	pfam_Pept_C14_caspase,pfam_DED,superfamily_DEATH-like_dom,smart_DED,smart_Pept_C14A_p45_core,prints_Pept_C14A_p45_core,pfscan_DED,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20	-	no_errors	CASP10	HGNC	ENSG00000003400				78	0	0	60	8	11.7647
CASP8	0	genome.wustl.edu	37	2	202136301	202136301	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	202136301	202136301	T	C	SNP	CASP8	ENST00000358485	human	ensembl	74_37	+1	known	missense	c.545	p.L182P	0.000	pfam_DED,superfamily_DEATH-like_dom,smart_DED,pfscan_DED	pfam_DED,pfam_Pept_C14_caspase,superfamily_DEATH-like_dom,smart_DED,smart_Pept_C14A_p45_core,pfscan_DED,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20,prints_Pept_C14A_p45_core	-	no_errors	CASP8	HGNC	ENSG00000064012				81	0	0	63	4	5.97015
ALS2CR11	0	genome.wustl.edu	37	2	202483730	202483730	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	202483730	202483730	G	A	SNP	ALS2CR11	ENST00000286195	human	ensembl	74_37	-1	known	missense	c.124	p.H42Y	0.000	NULL	superfamily_C2_dom	-	no_errors	ALS2CR11	HGNC	ENSG00000155754				82	0	0	78	6	7.14286
MPP4	0	genome.wustl.edu	37	2	202510022	202510022	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	202510022	202510022	C	T	SNP	MPP4	ENST00000359962	human	ensembl	74_37	-1	known	missense	c.1825	p.A609T	0.990	pfam_GK/Ca_channel_bsu,superfamily_P-loop_NTPase,smart_GK/Ca_channel_bsu,pfscan_Guanylate_kin-like	pfam_GK/Ca_channel_bsu,pfam_L27_C,pfam_PDZ,pfam_SH3_2,pfam_SH3_domain,superfamily_P-loop_NTPase,superfamily_SH3_domain,superfamily_PDZ,smart_L27,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like	-	no_errors	MPP4	HGNC	ENSG00000082126				87	0	0	74	6	7.5
ALS2	0	genome.wustl.edu	37	2	202588154	202588154	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	202588154	202588154	A	G	SNP	ALS2	ENST00000264276	human	ensembl	74_37	-1	known	missense	c.3523	p.Y1175H	1.000	pfam_MORN,smart_MORN	pfam_Reg_chr_condens,pfam_MORN,pfam_VPS9,pfam_DH-domain,superfamily_RCC1/BLIP-II,superfamily_DH-domain,smart_MORN,pfscan_VPS9,pfscan_Reg_chr_condens,pfscan_DH-domain,prints_Reg_chr_condens	-	no_errors	ALS2	HGNC	ENSG00000003393				170	0	0	119	9	7.03125
NOP58	0	genome.wustl.edu	37	2	203160406	203160406	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	203160406	203160406	T	C	SNP	NOP58	ENST00000264279	human	ensembl	74_37	+1	known	missense	c.917	p.L306S	1.000	pfam_Nop_dom	pfam_Nop_dom,pfam_NOSIC,pfam_NOP5_N,smart_NOSIC	-	no_errors	NOP58	HGNC	ENSG00000055044				191	0	0	155	11	6.62651
FAM117B	0	genome.wustl.edu	37	2	203630429	203630429	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	203630429	203630429	T	C	SNP	FAM117B	ENST00000392238	human	ensembl	74_37	+1	known	missense	c.1712	p.V571A	0.467	NULL	NULL	-	no_errors	FAM117B	HGNC	ENSG00000138439				91	0	0	70	4	5.40541
ICA1L	0	genome.wustl.edu	37	2	203693595	203693595	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	203693595	203693595	A	G	SNP	ICA1L	ENST00000358299	human	ensembl	74_37	-1	known	silent	c.138	p.D46	1.000	pfam_AH_dom,pfscan_AH_dom	pfam_Islet_autoAg_Ica1_C,pfam_AH_dom,pfscan_AH_dom	-	no_errors	ICA1L	HGNC	ENSG00000163596				151	1	0.657895	113	12	9.6
SDC1	0	genome.wustl.edu	37	2	20403763	20403763	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	20403763	20403763	C	A	SNP	SDC1	ENST00000254351	human	ensembl	74_37	-1	known	missense	c.438	p.Q146H	0.985	pfam_Syndecan/Neurexin_dom	pfam_Syndecan/Neurexin_dom,smart_Neurexin-like	-	no_errors	SDC1	HGNC	ENSG00000115884				94	0	0	98	6	5.76923
RAPH1	0	genome.wustl.edu	37	2	204305854	204305854	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	204305854	204305854	G	A	SNP	RAPH1	ENST00000374493	human	ensembl	74_37	-1	known	missense	c.2215	p.P739S	0.180	superfamily_Kinase-like_dom	pfam_Ras-assoc,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,smart_Ras-assoc,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,prints_Paxillin	-	no_errors	RAPH1	HGNC	ENSG00000173166				67	0	0	71	9	11.25
RAPH1	0	genome.wustl.edu	37	2	204309652	204309652	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	204309652	204309652	A	C	SNP	RAPH1	ENST00000374493	human	ensembl	74_37	-1	known	missense	c.1871	p.I624S	0.533	superfamily_Kinase-like_dom	pfam_Ras-assoc,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,smart_Ras-assoc,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,prints_Paxillin	-	no_errors	RAPH1	HGNC	ENSG00000173166				135	0	0	114	9	7.31707
PUM2	0	genome.wustl.edu	37	2	20451433	20451433	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	20451433	20451433	C	T	SNP	PUM2	ENST00000361078	human	ensembl	74_37	-1	known	silent	c.3114	p.K1038	1.000	superfamily_ARM-type_fold,pfscan_Pumilio_RNA-bd_rpt	pfam_Pumilio_RNA-bd_rpt,superfamily_ARM-type_fold,smart_Pumilio_RNA-bd_rpt,pfscan_Pumilio_RNA-bd_rpt	-	no_errors	PUM2	HGNC	ENSG00000055917				188	0	0	132	11	7.69231
PUM2	0	genome.wustl.edu	37	2	20483138	20483138	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	20483138	20483138	T	C	SNP	PUM2	ENST00000361078	human	ensembl	74_37	-1	known	silent	c.1401	p.T467	0.813	NULL	pfam_Pumilio_RNA-bd_rpt,superfamily_ARM-type_fold,smart_Pumilio_RNA-bd_rpt,pfscan_Pumilio_RNA-bd_rpt	-	no_errors	PUM2	HGNC	ENSG00000055917				90	0	0	66	5	7.04225
NDUFS1	0	genome.wustl.edu	37	2	207011675	207011675	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	207011675	207011675	G	A	SNP	NDUFS1	ENST00000455934	human	ensembl	74_37	-1	known	missense	c.731	p.A244V	1.000	tigrfam_NADH_UbQ_OxRdtase_Gsu	pfam_Mopterin_OxRdtase,pfam_NADH_UbQ_OxRdtase_Gsu_4Fe4S-bd,pfam_NuoG_C,pfam_2Fe-2S_ferredoxin-type,superfamily_2Fe-2S_ferredoxin-type,smart_NADH_UbQ_OxRdtase_Gsu_4Fe4S-bd,pfscan_2Fe-2S_ferredoxin-type,tigrfam_NADH_UbQ_OxRdtase_Gsu	-	no_errors	NDUFS1	HGNC	ENSG00000023228				108	0	0	67	9	11.8421
ZDBF2	0	genome.wustl.edu	37	2	207173626	207173626	+	Silent	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	207173626	207173626	T	G	SNP	ZDBF2	ENST00000374423	human	ensembl	74_37	+1	known	silent	c.4374	p.S1458	0.747	NULL	pfam_Znf_DBF,smart_Znf_DBF	-	no_errors	ZDBF2	HGNC	ENSG00000204186				43	0	0	46	4	8
ZDBF2	0	genome.wustl.edu	37	2	207174279	207174279	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	207174279	207174279	C	T	SNP	ZDBF2	ENST00000374423	human	ensembl	74_37	+1	known	missense	c.5027	p.T1676M	0.002	NULL	pfam_Znf_DBF,smart_Znf_DBF	-	no_errors	ZDBF2	HGNC	ENSG00000204186				118	0	0	60	11	15.493
ADAM23	0	genome.wustl.edu	37	2	207429771	207429771	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	207429771	207429771	G	A	SNP	ADAM23	ENST00000264377	human	ensembl	74_37	+1	known	missense	c.1373	p.G458D	1.000	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B	-	no_errors	ADAM23	HGNC	ENSG00000114948				107	0	0	80	5	5.88235
DYTN	0	genome.wustl.edu	37	2	207530748	207530748	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	207530748	207530748	A	C	SNP	DYTN	ENST00000452335	human	ensembl	74_37	-1	known	missense	c.986	p.L329R	0.947	NULL	pfam_EF-hand_dom_typ2,pfam_EF-hand_dom_typ1,pfam_Znf_ZZ,smart_Znf_ZZ,pfscan_Znf_ZZ	-	no_errors	DYTN	HGNC	ENSG00000232125				105	0	0	76	6	7.31707
CPO	0	genome.wustl.edu	37	2	207825666	207825666	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	207825666	207825666	A	G	SNP	CPO	ENST00000272852	human	ensembl	74_37	+1	known	missense	c.574	p.S192G	0.994	pfam_Peptidase_M14,smart_Peptidase_M14	pfam_Peptidase_M14,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPO	HGNC	ENSG00000144410				158	0	0	130	9	6.47482
CREB1	0	genome.wustl.edu	37	2	208432253	208432253	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	208432253	208432253	C	T	SNP	CREB1	ENST00000432329	human	ensembl	74_37	+1	known	nonsense	c.370	p.R124*	1.000	pfam_Coactivator_CBP_pKID,pfscan_Coactivator_CBP_pKID,prints_Leuzip_CREB	pfam_Coactivator_CBP_pKID,pfam_bZIP,superfamily_TF_DNA-bd,smart_bZIP,pfscan_Coactivator_CBP_pKID,pfscan_bZIP,prints_Leuzip_CREB	-	no_errors	CREB1	HGNC	ENSG00000118260				66	0	0	33	8	19.5122
CRYGC	0	genome.wustl.edu	37	2	208993087	208993087	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	208993087	208993087	C	T	SNP	CRYGC	ENST00000282141	human	ensembl	74_37	-1	known	missense	c.365	p.R122H	0.997	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	CRYGC	HGNC	ENSG00000163254				53	0	0	62	8	11.4286
IDH1	0	genome.wustl.edu	37	2	209113132	209113132	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	209113132	209113132	T	C	SNP	IDH1	ENST00000345146	human	ensembl	74_37	-1	known	silent	c.375	p.V125	0.847	pfam_IsoPropMal-DH-like_dom,pirsf_Isocitrate_DH_NADP,tigrfam_Isocitrate_DH_NADP	pfam_IsoPropMal-DH-like_dom,pirsf_Isocitrate_DH_NADP,tigrfam_Isocitrate_DH_NADP	-	no_errors	IDH1	HGNC	ENSG00000138413				95	0	0	87	6	6.45161
PIKFYVE	0	genome.wustl.edu	37	2	209165682	209165682	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	209165682	209165682	C	A	SNP	PIKFYVE	ENST00000264380	human	ensembl	74_37	+1	known	missense	c.1072	p.L358M	0.962	NULL	pfam_PInositol-4-P-5-kinase_core,pfam_Cpn60/TCP-1,pfam_DEP_dom,pfam_Znf_FYVE,superfamily_GroEL-like_apical_dom,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,smart_DEP_dom,smart_PInositol-4P-5-kinase_core_sub,pfscan_DEP_dom,pfscan_Znf_FYVE-rel	-	no_errors	PIKFYVE	HGNC	ENSG00000115020				99	0	0	71	5	6.57895
PTH2R	0	genome.wustl.edu	37	2	209271804	209271804	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	209271804	209271804	T	C	SNP	PTH2R	ENST00000272847	human	ensembl	74_37	+1	known	silent	c.36	p.G12	0.547	NULL	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	PTH2R	HGNC	ENSG00000144407				136	0	0	117	8	6.4
PTH2R	0	genome.wustl.edu	37	2	209307125	209307125	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	209307125	209307125	G	A	SNP	PTH2R	ENST00000272847	human	ensembl	74_37	+1	known	missense	c.448	p.V150I	0.001	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	PTH2R	HGNC	ENSG00000144407				251	1	0.396825	189	19	9.13462
PTH2R	0	genome.wustl.edu	37	2	209353840	209353840	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	209353840	209353840	C	T	SNP	PTH2R	ENST00000272847	human	ensembl	74_37	+1	known	missense	c.1180	p.R394C	1.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	PTH2R	HGNC	ENSG00000144407				82	0	0	57	6	9.52381
MAP2	0	genome.wustl.edu	37	2	210560092	210560092	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	210560092	210560092	G	T	SNP	MAP2	ENST00000360351	human	ensembl	74_37	+1	known	missense	c.3198	p.R1066S	0.000	pfam_MAP2_projctn	pfam_MAP2_projctn,pfam_MAP_tubulin-bd_rpt	-	no_errors	MAP2	HGNC	ENSG00000078018				109	1	0.909091	78	18	18.75
MAP2	0	genome.wustl.edu	37	2	210588382	210588382	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	210588382	210588382	A	T	SNP	MAP2	ENST00000199940	human	ensembl	74_37	+1	known	missense	c.1240	p.N414Y	1.000	pfam_MAP_tubulin-bd_rpt	pfam_MAP_tubulin-bd_rpt	-	no_errors	MAP2	HGNC	ENSG00000078018				69	0	0	52	5	8.77193
KANSL1L	0	genome.wustl.edu	37	2	210887769	210887769	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	210887769	210887769	T	C	SNP	KANSL1L	ENST00000281772	human	ensembl	74_37	-1	known	silent	c.2868	p.V956	0.000	NULL	NULL	-	no_errors	KANSL1L	HGNC	ENSG00000144445				102	0	0	92	5	5.15464
KANSL1L	0	genome.wustl.edu	37	2	210892042	210892042	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	210892042	210892042	T	C	SNP	KANSL1L	ENST00000281772	human	ensembl	74_37	-1	known	missense	c.2429	p.E810G	0.168	NULL	NULL	-	no_errors	KANSL1L	HGNC	ENSG00000144445				116	0	0	89	9	9.18367
LANCL1	0	genome.wustl.edu	37	2	211319880	211319880	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	211319880	211319880	G	A	SNP	LANCL1	ENST00000233714	human	ensembl	74_37	-1	known	silent	c.358	p.L120	1.000	pfam_LANC-like,superfamily_6-hairpin_glycosidase-like	pfam_LANC-like,superfamily_6-hairpin_glycosidase-like,prints_LanC-like_prot_euk,prints_LANC-like	-	no_errors	LANCL1	HGNC	ENSG00000115365				117	1	0.847458	97	14	12.6126
CPS1	0	genome.wustl.edu	37	2	211465360	211465360	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	211465360	211465360	C	T	SNP	CPS1	ENST00000430249	human	ensembl	74_37	+1	known	missense	c.1649	p.T550M	1.000	superfamily_PreATP-grasp_dom,tigrfam_CarbamoylP_synth_lsu	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_ssu_N,pfam_CarbamoylP_synth_lsu_oligo,pfam_GATASE,pfam_CarbamoylP_synth_lsu_N,pfam_MGS-like_dom,pfam_ATP-grasp_carboxylate-amine,pfam_Dala_Dala_lig_C,superfamily_CarbamoylP_synth_lsu_oligo,superfamily_CarbamoylP_synth_ssu_N,superfamily_PreATP-grasp_dom,superfamily_MGS-like_dom,smart_MGS-like_dom,pfscan_ATP-grasp,prints_CbamoylP_synth_lsu_CPSase_dom,tigrfam_CarbamoylP_synth_lsu,tigrfam_CarbamoylP_synth_ssu	-	no_errors	CPS1	HGNC	ENSG00000021826				133	0	0	113	6	5.04202
ERBB4	0	genome.wustl.edu	37	2	212293210	212293210	+	Splice_Site	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	212293210	212293210	T	A	SNP	ERBB4	ENST00000342788	human	ensembl	74_37	-1	known	splice_site	c.2644-2	e22-2	1.000	-	-	-	no_errors	ERBB4	HGNC	ENSG00000178568				145	1	0.684932	96	11	10.2804
APOB	0	genome.wustl.edu	37	2	21230586	21230586	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	21230586	21230586	T	G	SNP	APOB	ENST00000233242	human	ensembl	74_37	-1	known	missense	c.9154	p.N3052H	1.000	NULL	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674				103	0	0	76	5	6.17284
APOB	0	genome.wustl.edu	37	2	21230676	21230676	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	21230676	21230676	C	A	SNP	APOB	ENST00000233242	human	ensembl	74_37	-1	known	missense	c.9064	p.D3022Y	0.417	NULL	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674				80	0	0	60	4	6.25
APOB	0	genome.wustl.edu	37	2	21231305	21231305	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	21231305	21231305	G	T	SNP	APOB	ENST00000233242	human	ensembl	74_37	-1	known	missense	c.8435	p.A2812E	0.924	NULL	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674				136	0	0	120	8	6.25
APOB	0	genome.wustl.edu	37	2	21237364	21237364	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	21237364	21237364	C	A	SNP	APOB	ENST00000233242	human	ensembl	74_37	-1	known	missense	c.3798	p.M1266I	0.024	NULL	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674				96	0	0	78	11	12.3596
APOB	0	genome.wustl.edu	37	2	21238370	21238370	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	21238370	21238370	G	A	SNP	APOB	ENST00000233242	human	ensembl	74_37	-1	known	missense	c.3380	p.P1127L	1.000	NULL	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674				71	0	0	52	6	10.3448
APOB	0	genome.wustl.edu	37	2	21252548	21252548	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	21252548	21252548	G	A	SNP	APOB	ENST00000233242	human	ensembl	74_37	-1	known	missense	c.1580	p.A527V	1.000	pfam_Lipid_transpt_N,superfamily_Vitellinogen_superhlx,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674				181	0	0	118	29	19.7279
ERBB4	0	genome.wustl.edu	37	2	212543788	212543788	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	212543788	212543788	G	T	SNP	ERBB4	ENST00000342788	human	ensembl	74_37	-1	known	missense	c.1611	p.N537K	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	ERBB4	HGNC	ENSG00000178568				49	0	0	21	6	22.2222
ERBB4	0	genome.wustl.edu	37	2	212570080	212570080	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	212570080	212570080	C	A	SNP	ERBB4	ENST00000342788	human	ensembl	74_37	-1	known	missense	c.1161	p.E387D	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_EGF_rcpt_L	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	ERBB4	HGNC	ENSG00000178568				181	1	0.549451	120	8	6.25
IKZF2	0	genome.wustl.edu	37	2	213914553	213914553	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	213914553	213914553	C	T	SNP	IKZF2	ENST00000434687	human	ensembl	74_37	-1	known	missense	c.458	p.G153D	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	IKZF2	HGNC	ENSG00000030419				46	0	0	31	7	18.4211
SPAG16	0	genome.wustl.edu	37	2	215275016	215275016	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	215275016	215275016	G	A	SNP	SPAG16	ENST00000331683	human	ensembl	74_37	+1	known	missense	c.1873	p.G625S	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	SPAG16	HGNC	ENSG00000144451				103	0	0	106	8	7.01754
ABCA12	0	genome.wustl.edu	37	2	215833442	215833442	+	Splice_Site	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	215833442	215833442	A	G	SNP	ABCA12	ENST00000272895	human	ensembl	74_37	-1	known	splice_site	c.5778+2	e38+2	1.000	-	-	-	no_errors	ABCA12	HGNC	ENSG00000144452				193	1	0.515464	151	11	6.79012
ABCA12	0	genome.wustl.edu	37	2	215847077	215847077	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	215847077	215847077	A	T	SNP	ABCA12	ENST00000272895	human	ensembl	74_37	-1	known	missense	c.4413	p.H1471Q	1.000	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA12	HGNC	ENSG00000144452				114	0	0	92	8	8
ABCA12	0	genome.wustl.edu	37	2	215851381	215851381	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	215851381	215851381	C	T	SNP	ABCA12	ENST00000272895	human	ensembl	74_37	-1	known	missense	c.4048	p.G1350R	1.000	superfamily_P-loop_NTPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA12	HGNC	ENSG00000144452				107	0	0	80	6	6.97674
ABCA12	0	genome.wustl.edu	37	2	215855563	215855563	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	215855563	215855563	A	G	SNP	ABCA12	ENST00000272895	human	ensembl	74_37	-1	known	missense	c.3487	p.Y1163H	1.000	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA12	HGNC	ENSG00000144452				92	0	0	63	6	8.69565
ABCA12	0	genome.wustl.edu	37	2	215901775	215901775	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	215901775	215901775	A	G	SNP	ABCA12	ENST00000272895	human	ensembl	74_37	-1	known	missense	c.887	p.V296A	0.856	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA12	HGNC	ENSG00000144452				81	0	0	69	7	9.21053
ABCA12	0	genome.wustl.edu	37	2	215928846	215928846	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	215928846	215928846	T	C	SNP	ABCA12	ENST00000272895	human	ensembl	74_37	-1	known	missense	c.260	p.Y87C	0.995	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA12	HGNC	ENSG00000144452				137	0	0	101	10	9.00901
ATIC	0	genome.wustl.edu	37	2	216184396	216184396	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	216184396	216184396	G	T	SNP	ATIC	ENST00000236959	human	ensembl	74_37	+1	known	missense	c.232	p.A78S	1.000	pfam_MGS-like_dom,superfamily_MGS-like_dom,smart_MGS-like_dom,pirsf_AICARFT_IMPCHas,tigrfam_AICARFT_IMPCHas	pfam_AICARFT_IMPCHas,pfam_MGS-like_dom,superfamily_Cytidine_deaminase-like,superfamily_MGS-like_dom,smart_MGS-like_dom,smart_AICARFT_IMPCHas,pirsf_AICARFT_IMPCHas,tigrfam_AICARFT_IMPCHas	-	no_errors	ATIC	HGNC	ENSG00000138363				89	0	0	56	4	6.66667
ATIC	0	genome.wustl.edu	37	2	216211630	216211630	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	216211630	216211630	C	T	SNP	ATIC	ENST00000236959	human	ensembl	74_37	+1	known	missense	c.1469	p.A490V	1.000	superfamily_Cytidine_deaminase-like,pirsf_AICARFT_IMPCHas,tigrfam_AICARFT_IMPCHas	pfam_AICARFT_IMPCHas,pfam_MGS-like_dom,superfamily_Cytidine_deaminase-like,superfamily_MGS-like_dom,smart_MGS-like_dom,smart_AICARFT_IMPCHas,pirsf_AICARFT_IMPCHas,tigrfam_AICARFT_IMPCHas	-	no_errors	ATIC	HGNC	ENSG00000138363				86	0	0	69	10	12.6582
FN1	0	genome.wustl.edu	37	2	216241350	216241350	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	216241350	216241350	T	C	SNP	FN1	ENST00000354785	human	ensembl	74_37	-1	known	missense	c.5758	p.T1920A	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibronectin_type1,pfam_FN_type2_col-bd,superfamily_Kringle-like,superfamily_Fibronectin_type3,smart_Fibronectin_type1,smart_FN_type2_col-bd,smart_Fibronectin_type3,pfscan_Fibronectin_type1,pfscan_FN_type2_col-bd,pfscan_Fibronectin_type3	-	no_errors	FN1	HGNC	ENSG00000115414				86	0	0	86	5	5.49451
FN1	0	genome.wustl.edu	37	2	216269191	216269191	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	216269191	216269191	A	G	SNP	FN1	ENST00000354785	human	ensembl	74_37	-1	known	silent	c.3174	p.P1058	0.996	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibronectin_type1,pfam_FN_type2_col-bd,superfamily_Kringle-like,superfamily_Fibronectin_type3,smart_Fibronectin_type1,smart_FN_type2_col-bd,smart_Fibronectin_type3,pfscan_Fibronectin_type1,pfscan_FN_type2_col-bd,pfscan_Fibronectin_type3	-	no_errors	FN1	HGNC	ENSG00000115414				101	1	0.980392	98	9	8.41121
FN1	0	genome.wustl.edu	37	2	216272839	216272839	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	216272839	216272839	G	A	SNP	FN1	ENST00000354785	human	ensembl	74_37	-1	known	missense	c.2510	p.P837L	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibronectin_type1,pfam_FN_type2_col-bd,superfamily_Kringle-like,superfamily_Fibronectin_type3,smart_Fibronectin_type1,smart_FN_type2_col-bd,smart_Fibronectin_type3,pfscan_Fibronectin_type1,pfscan_FN_type2_col-bd,pfscan_Fibronectin_type3	-	no_errors	FN1	HGNC	ENSG00000115414				113	0	0	87	21	19.4444
FN1	0	genome.wustl.edu	37	2	216273076	216273076	+	Nonsense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	216273076	216273076	A	T	SNP	FN1	ENST00000354785	human	ensembl	74_37	-1	known	nonsense	c.2373	p.Y791*	0.675	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibronectin_type1,pfam_FN_type2_col-bd,superfamily_Kringle-like,superfamily_Fibronectin_type3,smart_Fibronectin_type1,smart_FN_type2_col-bd,smart_Fibronectin_type3,pfscan_Fibronectin_type1,pfscan_FN_type2_col-bd,pfscan_Fibronectin_type3	-	no_errors	FN1	HGNC	ENSG00000115414				81	0	0	66	5	7.04225
FN1	0	genome.wustl.edu	37	2	216300512	216300512	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	216300512	216300512	G	A	SNP	FN1	ENST00000354785	human	ensembl	74_37	-1	known	missense	c.14	p.P5L	1.000	NULL	pfam_Fibronectin_type3,pfam_Fibronectin_type1,pfam_FN_type2_col-bd,superfamily_Kringle-like,superfamily_Fibronectin_type3,smart_Fibronectin_type1,smart_FN_type2_col-bd,smart_Fibronectin_type3,pfscan_Fibronectin_type1,pfscan_FN_type2_col-bd,pfscan_Fibronectin_type3	-	no_errors	FN1	HGNC	ENSG00000115414				9	0	0	6	3	33.3333
MREG	0	genome.wustl.edu	37	2	216810365	216810365	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	216810365	216810365	A	G	SNP	MREG	ENST00000263268	human	ensembl	74_37	-1	known	silent	c.439	p.L147	0.998	NULL	NULL	-	no_errors	MREG	HGNC	ENSG00000118242				108	0	0	88	7	7.36842
XRCC5	0	genome.wustl.edu	37	2	216981555	216981555	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	216981555	216981555	A	G	SNP	XRCC5	ENST00000392132	human	ensembl	74_37	+1	known	silent	c.309	p.Q103	0.829	pfam_Ku_N,smart_VWF_A	pfam_Ku_N,pfam_Ku_PK_bind,pfam_Ku70/Ku80_beta-barrel_dom,pfam_Ku_C,superfamily_SPOC_like_C_dom,superfamily_Ku_PK_bind,smart_VWF_A,smart_Ku70/Ku80_beta-barrel_dom	-	no_errors	XRCC5	HGNC	ENSG00000079246				110	0	0	85	26	23.4234
SMARCAL1	0	genome.wustl.edu	37	2	217280157	217280157	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	217280157	217280157	A	G	SNP	SMARCAL1	ENST00000357276	human	ensembl	74_37	+1	known	missense	c.730	p.N244D	0.000	NULL	pfam_HARP_dom,pfam_SNF2_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SMARCAL1	HGNC	ENSG00000138375				180	0	0	151	13	7.92683
TNS1	0	genome.wustl.edu	37	2	218669296	218669296	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	218669296	218669296	G	A	SNP	TNS1	ENST00000171887	human	ensembl	74_37	-1	known	silent	c.5094	p.G1698	1.000	pfam_PTB,smart_PTB/PI_dom	pfam_PTB,pfam_Tensin_phosphatase_C2-dom,pfam_SH2,superfamily_C2_dom,smart_Tyr_Pase_cat,smart_SH2,smart_PTB/PI_dom,pfscan_SH2,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TNS1	HGNC	ENSG00000079308				64	0	0	57	17	22.973
TNS1	0	genome.wustl.edu	37	2	218712549	218712549	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	218712549	218712549	C	T	SNP	TNS1	ENST00000171887	human	ensembl	74_37	-1	known	silent	c.2316	p.S772	0.000	NULL	pfam_PTB,pfam_Tensin_phosphatase_C2-dom,pfam_SH2,superfamily_C2_dom,smart_Tyr_Pase_cat,smart_SH2,smart_PTB/PI_dom,pfscan_SH2,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TNS1	HGNC	ENSG00000079308				39	0	0	27	11	28.9474
CXCR2	0	genome.wustl.edu	37	2	218999581	218999581	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	218999581	218999581	T	A	SNP	CXCR2	ENST00000318507	human	ensembl	74_37	+1	known	missense	c.57	p.D19E	0.000	prints_Chemokine_CXCR2	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Chemokine_CXCR_1/2,prints_GPCR_Rhodpsn,prints_Chemokine_CXCR2,prints_Chemokine_rcpt,prints_Chemokine_CXCR4	-	no_errors	CXCR2	HGNC	ENSG00000180871				150	0	0	122	24	16.4384
CXCR2	0	genome.wustl.edu	37	2	219000013	219000013	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	219000013	219000013	A	C	SNP	CXCR2	ENST00000318507	human	ensembl	74_37	+1	known	missense	c.489	p.K163N	0.845	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Chemokine_CXCR_1/2,prints_GPCR_Rhodpsn,prints_Chemokine_CXCR2,prints_Chemokine_rcpt,prints_Chemokine_CXCR4	-	no_errors	CXCR2	HGNC	ENSG00000180871				71	0	0	56	5	8.19672
CXCR1	0	genome.wustl.edu	37	2	219029676	219029676	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	219029676	219029676	G	T	SNP	CXCR1	ENST00000295683	human	ensembl	74_37	-1	known	missense	c.259	p.L87I	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Chemokine_CXCR_1/2,prints_GPCR_Rhodpsn,prints_Chemokine_CXCR1,prints_Chemokine_rcpt,prints_Chemokine_CXCR4	-	no_errors	CXCR1	HGNC	ENSG00000163464				101	0	0	112	10	8.19672
CTDSP1	0	genome.wustl.edu	37	2	219267084	219267084	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	219267084	219267084	G	A	SNP	CTDSP1	ENST00000273062	human	ensembl	74_37	+1	known	missense	c.334	p.A112T	1.000	pfam_NIF,superfamily_HAD-like_dom,smart_NIF,pfscan_NIF,tigrfam_Dullard_phosphatase	pfam_NIF,superfamily_HAD-like_dom,smart_NIF,pfscan_NIF,tigrfam_Dullard_phosphatase	-	no_errors	CTDSP1	HGNC	ENSG00000144579				69	0	0	63	7	10
CTDSP1	0	genome.wustl.edu	37	2	219269251	219269251	+	RNA	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	219269251	219269251	A	G	SNP	CTDSP1	ENST00000464255	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CTDSP1	HGNC	ENSG00000144579				16	0	0	20	3	13.0435
USP37	0	genome.wustl.edu	37	2	219350422	219350422	+	Nonsense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	219350422	219350422	A	T	SNP	USP37	ENST00000258399	human	ensembl	74_37	-1	known	nonsense	c.1635	p.C545*	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfam_Ubiquitin-int_motif,smart_Ubiquitin-int_motif,pfscan_Ubiquitin-int_motif,pfscan_Peptidase_C19/C67	-	no_errors	USP37	HGNC	ENSG00000135913				148	0	0	66	24	26.6667
USP37	0	genome.wustl.edu	37	2	219411702	219411702	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	219411702	219411702	C	T	SNP	USP37	ENST00000258399	human	ensembl	74_37	-1	known	missense	c.542	p.R181Q	0.233	NULL	pfam_Peptidase_C19/C67,pfam_Ubiquitin-int_motif,smart_Ubiquitin-int_motif,pfscan_Ubiquitin-int_motif,pfscan_Peptidase_C19/C67	-	no_errors	USP37	HGNC	ENSG00000135913				143	0	0	83	9	9.78261
PLCD4	0	genome.wustl.edu	37	2	219487417	219487417	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	219487417	219487417	A	G	SNP	PLCD4	ENST00000417849	human	ensembl	74_37	+1	known	silent	c.588	p.V196	0.340	smart_EF_hand_dom,pfscan_EF_hand_dom	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_Pleckstrin_homology,smart_EF_hand_dom,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,pfscan_EF_hand_dom,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCD4	HGNC	ENSG00000115556				53	0	0	58	7	10.7692
ZNF142	0	genome.wustl.edu	37	2	219508288	219508288	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	219508288	219508288	A	T	SNP	ZNF142	ENST00000411696	human	ensembl	74_37	-1	known	missense	c.2951	p.V984D	0.035	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF142	HGNC	ENSG00000115568				105	0	0	141	11	7.23684
RNF25	0	genome.wustl.edu	37	2	219528796	219528796	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	219528796	219528796	G	T	SNP	RNF25	ENST00000295704	human	ensembl	74_37	-1	known	missense	c.1264	p.R422S	0.992	NULL	pfam_RWD-domain,superfamily_UBQ-conjugating_enzyme/RWD,smart_RWD-domain,smart_Znf_RING,pfscan_RWD-domain,pfscan_Znf_RING	-	no_errors	RNF25	HGNC	ENSG00000163481				153	0	0	154	24	13.4831
RNF25	0	genome.wustl.edu	37	2	219528942	219528942	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	219528942	219528942	G	A	SNP	RNF25	ENST00000295704	human	ensembl	74_37	-1	known	missense	c.1118	p.P373L	0.927	NULL	pfam_RWD-domain,superfamily_UBQ-conjugating_enzyme/RWD,smart_RWD-domain,smart_Znf_RING,pfscan_RWD-domain,pfscan_Znf_RING	-	no_errors	RNF25	HGNC	ENSG00000163481				131	0	0	133	27	16.875
STK36	0	genome.wustl.edu	37	2	219558684	219558684	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	219558684	219558684	C	T	SNP	STK36	ENST00000295709	human	ensembl	74_37	+1	known	missense	c.2314	p.R772W	1.000	superfamily_ARM-type_fold	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	STK36	HGNC	ENSG00000163482				77	0	0	67	5	6.94444
TTLL4	0	genome.wustl.edu	37	2	219603528	219603528	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	219603528	219603528	A	G	SNP	TTLL4	ENST00000258398	human	ensembl	74_37	+1	known	missense	c.1129	p.R377G	0.005	NULL	pfam_TTL/TTLL_fam	-	no_errors	TTLL4	HGNC	ENSG00000135912				97	0	0	83	24	22.4299
WNT6	0	genome.wustl.edu	37	2	219736234	219736234	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	219736234	219736234	C	T	SNP	WNT6	ENST00000233948	human	ensembl	74_37	+1	known	missense	c.329	p.A110V	1.000	pfam_Wnt,smart_Wnt,prints_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt6	-	no_errors	WNT6	HGNC	ENSG00000115596				31	0	0	19	3	13.6364
CCDC108	0	genome.wustl.edu	37	2	219869020	219869020	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	219869020	219869020	T	C	SNP	CCDC108	ENST00000341552	human	ensembl	74_37	-1	known	missense	c.5209	p.S1737G	0.000	NULL	superfamily_PapD-like,pfscan_MSP_dom	-	no_errors	CCDC108	HGNC	ENSG00000181378				185	0	0	154	14	8.33333
SLC23A3	0	genome.wustl.edu	37	2	220033490	220033490	+	Silent	SNP	G	G	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	220033490	220033490	G	C	SNP	SLC23A3	ENST00000455516	human	ensembl	74_37	-1	known	silent	c.582	p.G194	0.138	pfam_Xant/urac/vitC	pfam_Xant/urac/vitC	-	no_errors	SLC23A3	HGNC	ENSG00000213901				36	0	0	27	3	10
FAM134A	0	genome.wustl.edu	37	2	220046854	220046854	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	220046854	220046854	T	C	SNP	FAM134A	ENST00000430297	human	ensembl	74_37	+1	known	missense	c.1135	p.S379P	0.181	NULL	pfam_Reticulon	-	no_errors	FAM134A	HGNC	ENSG00000144567				128	0	0	123	17	12.1429
DNAJB2	0	genome.wustl.edu	37	2	220149476	220149476	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	220149476	220149476	G	A	SNP	DNAJB2	ENST00000336576	human	ensembl	74_37	+1	known	missense	c.742	p.D248N	0.376	NULL	pfam_DnaJ_domain,superfamily_DnaJ_domain,smart_DnaJ_domain,smart_Ubiquitin-int_motif,pfscan_Ubiquitin-int_motif,pfscan_DnaJ_domain,prints_DnaJ_domain	-	no_errors	DNAJB2	HGNC	ENSG00000135924				31	0	0	28	9	24.3243
SPEG	0	genome.wustl.edu	37	2	220349088	220349088	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	220349088	220349088	G	A	SNP	SPEG	ENST00000312358	human	ensembl	74_37	+1	novel	silent	c.6903	p.P2301	0.625	NULL	pfam_Ig_I-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	SPEG	HGNC	ENSG00000072195				17	0	0	20	6	23.0769
SPEG	0	genome.wustl.edu	37	2	220354263	220354263	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	220354263	220354263	A	G	SNP	SPEG	ENST00000312358	human	ensembl	74_37	+1	novel	silent	c.8523	p.P2841	0.139	NULL	pfam_Ig_I-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	SPEG	HGNC	ENSG00000072195				63	0	0	66	10	13.1579
SPEG	0	genome.wustl.edu	37	2	220357350	220357350	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	220357350	220357350	C	A	SNP	SPEG	ENST00000312358	human	ensembl	74_37	+1	novel	missense	c.9646	p.P3216T	0.996	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ig_I-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	SPEG	HGNC	ENSG00000072195				104	0	0	92	10	9.80392
GMPPA	0	genome.wustl.edu	37	2	220366625	220366625	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	220366625	220366625	C	T	SNP	GMPPA	ENST00000313597	human	ensembl	74_37	+1	known	nonsense	c.295	p.R99*	1.000	pfam_NTP_transferase	pfam_NTP_transferase	-	no_errors	GMPPA	HGNC	ENSG00000144591				80	0	0	90	24	21.0526
EPHA4	0	genome.wustl.edu	37	2	222310897	222310897	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	222310897	222310897	T	C	SNP	EPHA4	ENST00000281821	human	ensembl	74_37	-1	known	missense	c.1720	p.S574G	1.000	pirsf_Tyr_kinase_ephrin_rcpt	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_2,pfam_SAM_type1,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	EPHA4	HGNC	ENSG00000116106				104	0	0	54	7	11.4754
EPHA4	0	genome.wustl.edu	37	2	222321482	222321482	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	222321482	222321482	T	C	SNP	EPHA4	ENST00000281821	human	ensembl	74_37	-1	known	missense	c.1454	p.E485G	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_2,pfam_SAM_type1,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	EPHA4	HGNC	ENSG00000116106				84	0	0	90	5	5.26316
FARSB	0	genome.wustl.edu	37	2	223499245	223499245	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	223499245	223499245	A	G	SNP	FARSB	ENST00000281828	human	ensembl	74_37	-1	known	silent	c.471	p.V157	1.000	pfam_B3/B4_tRNA-bd,smart_B3/B4_tRNA-bd,tigrfam_Phe-tRNA-synth_IIc_bsu_arc	pfam_B3/B4_tRNA-bd,pfam_tRNA_synthase_B5-dom,superfamily_DNA-bd_dom_put,superfamily_Phe-tRNA_synthase_B3/B4,smart_B3/B4_tRNA-bd,smart_tRNA_synthase_B5-dom,tigrfam_Phe-tRNA-synth_IIc_bsu_arc	-	no_errors	FARSB	HGNC	ENSG00000116120				79	0	0	61	5	7.57576
SCG2	0	genome.wustl.edu	37	2	224462954	224462954	+	Nonsense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	224462954	224462954	A	T	SNP	SCG2	ENST00000305409	human	ensembl	74_37	-1	known	nonsense	c.1047	p.Y349*	0.997	pfam_Granin	pfam_Granin	-	no_errors	SCG2	HGNC	ENSG00000171951				146	0	0	124	7	5.34351
DOCK10	0	genome.wustl.edu	37	2	225630541	225630541	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	225630541	225630541	T	C	SNP	DOCK10	ENST00000258390	human	ensembl	74_37	-1	known	missense	c.6458	p.D2153G	1.000	NULL	pfam_DOCK_C,pfam_DOCK_C/D_N,pfam_Pleckstrin_homology,superfamily_ARM-type_fold,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK10	HGNC	ENSG00000135905				40	0	0	21	4	16
NYAP2	0	genome.wustl.edu	37	2	226446929	226446929	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	226446929	226446929	G	A	SNP	NYAP2	ENST00000272907	human	ensembl	74_37	+1	known	missense	c.796	p.A266T	1.000	NULL	NULL	-	no_errors	NYAP2	HGNC	ENSG00000144460				112	0	0	112	8	6.66667
NYAP2	0	genome.wustl.edu	37	2	226447576	226447576	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	226447576	226447576	G	A	SNP	NYAP2	ENST00000272907	human	ensembl	74_37	+1	known	silent	c.1443	p.S481	0.821	NULL	NULL	-	no_errors	NYAP2	HGNC	ENSG00000144460				38	0	0	36	16	30.7692
IRS1	0	genome.wustl.edu	37	2	227660190	227660190	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	227660190	227660190	G	A	SNP	IRS1	ENST00000305123	human	ensembl	74_37	-1	known	missense	c.3265	p.R1089C	1.000	NULL	pfam_Insln_rcpt_S1,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,prints_Insln_rcpt_S1,pfscan_Pleckstrin_homology,pfscan_Insln_rcpt_S1	-	no_errors	IRS1	HGNC	ENSG00000169047				87	0	0	86	7	7.52688
IRS1	0	genome.wustl.edu	37	2	227663097	227663097	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	227663097	227663097	G	A	SNP	IRS1	ENST00000305123	human	ensembl	74_37	-1	known	missense	c.358	p.H120Y	1.000	NULL	pfam_Insln_rcpt_S1,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,prints_Insln_rcpt_S1,pfscan_Pleckstrin_homology,pfscan_Insln_rcpt_S1	-	no_errors	IRS1	HGNC	ENSG00000169047				69	0	0	63	5	7.35294
RHBDD1	0	genome.wustl.edu	37	2	227732001	227732001	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	227732001	227732001	T	A	SNP	RHBDD1	ENST00000341329	human	ensembl	74_37	+1	known	missense	c.533	p.V178D	0.845	pfam_Peptidase_S54_rhomboid_dom	pfam_Peptidase_S54_rhomboid_dom	-	no_errors	RHBDD1	HGNC	ENSG00000144468				217	0	0	169	13	7.14286
COL4A4	0	genome.wustl.edu	37	2	227919385	227919385	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	227919385	227919385	G	A	SNP	COL4A4	ENST00000396625	human	ensembl	74_37	-1	known	missense	c.2785	p.P929S	0.909	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A4	HGNC	ENSG00000081052				73	0	0	44	7	13.7255
MFF	0	genome.wustl.edu	37	2	228220472	228220472	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	228220472	228220472	C	T	SNP	MFF	ENST00000353339	human	ensembl	74_37	+1	known	nonsense	c.892	p.R298*	1.000	pfam_FATE/Miff/Tango-11	pfam_FATE/Miff/Tango-11	-	no_errors	MFF	HGNC	ENSG00000168958				271	0	0	174	17	8.90052
CCL20	0	genome.wustl.edu	37	2	228680264	228680264	+	Silent	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	228680264	228680264	C	A	SNP	CCL20	ENST00000358813	human	ensembl	74_37	+1	known	silent	c.171	p.G57	0.725	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom	-	no_errors	CCL20	HGNC	ENSG00000115009				156	1	0.636943	100	14	12.2807
SPHKAP	0	genome.wustl.edu	37	2	228884736	228884736	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	228884736	228884736	T	C	SNP	SPHKAP	ENST00000392056	human	ensembl	74_37	-1	known	silent	c.834	p.T278	0.000	NULL	pfam_AKAP_110_C	-	no_errors	SPHKAP	HGNC	ENSG00000153820				309	2	0.643087	222	15	6.32911
SLC16A14	0	genome.wustl.edu	37	2	230910760	230910760	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	230910760	230910760	A	G	SNP	SLC16A14	ENST00000295190	human	ensembl	74_37	-1	known	missense	c.1082	p.I361T	0.997	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A14	HGNC	ENSG00000163053				44	0	0	47	7	12.963
SLC16A14	0	genome.wustl.edu	37	2	230923905	230923905	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	230923905	230923905	C	T	SNP	SLC16A14	ENST00000295190	human	ensembl	74_37	-1	known	missense	c.164	p.G55D	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A14	HGNC	ENSG00000163053				77	0	0	63	7	10
SP110	0	genome.wustl.edu	37	2	231036441	231036441	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	231036441	231036441	T	C	SNP	SP110	ENST00000258381	human	ensembl	74_37	-1	known	missense	c.1858	p.S620G	0.064	superfamily_Bromodomain,smart_Bromodomain	pfam_Sp100,pfam_SAND_dom,superfamily_SAND_dom-like,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_SAND_dom,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_PHD-finger,pfscan_SAND_dom	-	no_errors	SP110	HGNC	ENSG00000135899				71	0	0	42	9	17.6471
SP110	0	genome.wustl.edu	37	2	231042316	231042316	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	231042316	231042316	T	C	SNP	SP110	ENST00000258381	human	ensembl	74_37	-1	known	missense	c.1528	p.N510D	0.000	pfam_SAND_dom,superfamily_SAND_dom-like,smart_SAND_dom,pfscan_SAND_dom	pfam_Sp100,pfam_SAND_dom,superfamily_SAND_dom-like,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_SAND_dom,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_PHD-finger,pfscan_SAND_dom	-	no_errors	SP110	HGNC	ENSG00000135899				315	0	0	227	17	6.96721
SP140	0	genome.wustl.edu	37	2	231134660	231134660	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	231134660	231134660	G	A	SNP	SP140	ENST00000392045	human	ensembl	74_37	+1	known	missense	c.1436	p.G479D	0.001	NULL	pfam_Sp100,pfam_SAND_dom,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_SAND_dom-like,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_SAND_dom,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_PHD-finger,pfscan_SAND_dom,pfscan_Bromodomain	-	no_errors	SP140	HGNC	ENSG00000079263				68	0	0	52	5	8.77193
SP140L	0	genome.wustl.edu	37	2	231193506	231193506	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	231193506	231193506	G	A	SNP	SP140L	ENST00000415673	human	ensembl	74_37	+1	known	missense	c.67	p.E23K	0.000	NULL	pfam_Sp100,pfam_SAND_dom,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_SAND_dom-like,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_SAND_dom,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_PHD-finger,pfscan_SAND_dom,pfscan_Bromodomain	-	no_errors	SP140L	HGNC	ENSG00000185404				74	0	0	50	7	12.2807
SP140L	0	genome.wustl.edu	37	2	231253321	231253321	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	231253321	231253321	G	T	SNP	SP140L	ENST00000415673	human	ensembl	74_37	+1	known	missense	c.832	p.A278S	0.000	NULL	pfam_Sp100,pfam_SAND_dom,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_SAND_dom-like,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_SAND_dom,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_PHD-finger,pfscan_SAND_dom,pfscan_Bromodomain	-	no_errors	SP140L	HGNC	ENSG00000185404				35	0	0	24	3	11.1111
PSMD1	0	genome.wustl.edu	37	2	231948386	231948386	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	231948386	231948386	T	C	SNP	PSMD1	ENST00000308696	human	ensembl	74_37	+1	known	missense	c.1631	p.I544T	1.000	pfam_Proteasome/cyclosome_rpt,superfamily_ARM-type_fold,pirsf_26S_Psome_Rpn2	pfam_Proteasome/cyclosome_rpt,superfamily_ARM-type_fold,pirsf_26S_Psome_Rpn2	-	no_errors	PSMD1	HGNC	ENSG00000173692				150	0	0	110	7	5.98291
HTR2B	0	genome.wustl.edu	37	2	231988258	231988258	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	231988258	231988258	A	G	SNP	HTR2B	ENST00000258400	human	ensembl	74_37	-1	known	missense	c.221	p.L74P	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_5HT2B_rcpt,prints_GPCR_Rhodpsn,prints_5HT_rcpt	-	no_errors	HTR2B	HGNC	ENSG00000135914				120	0	0	112	11	8.94309
NCL	0	genome.wustl.edu	37	2	232325554	232325554	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	232325554	232325554	T	A	SNP	NCL	ENST00000322723	human	ensembl	74_37	-1	known	missense	c.637	p.T213S	0.010	NULL	pfam_RRM_dom,smart_RRM_dom,smart_RRM_dom_euk,pfscan_RRM_dom	-	no_errors	NCL	HGNC	ENSG00000115053				153	0	0	123	10	7.5188
DIS3L2	0	genome.wustl.edu	37	2	233194691	233194691	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	233194691	233194691	C	T	SNP	DIS3L2	ENST00000390005	human	ensembl	74_37	+1	known	missense	c.1835	p.P612L	0.009	NULL	NULL	-	no_errors	DIS3L2	HGNC	ENSG00000144535				71	0	0	60	7	10.4478
ALPI	0	genome.wustl.edu	37	2	233322832	233322832	+	Silent	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	233322832	233322832	C	A	SNP	ALPI	ENST00000295463	human	ensembl	74_37	+1	known	silent	c.981	p.L327	0.999	pfam_Alkaline_phosphatase,superfamily_Alkaline_phosphatase_core,smart_Alkaline_phosphatase,prints_Alkaline_phosphatase	pfam_Alkaline_phosphatase,superfamily_Alkaline_phosphatase_core,smart_Alkaline_phosphatase,prints_Alkaline_phosphatase	-	no_errors	ALPI	HGNC	ENSG00000163295				53	0	0	58	8	12.1212
CHRNG	0	genome.wustl.edu	37	2	233404465	233404465	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	233404465	233404465	G	T	SNP	CHRNG	ENST00000389494	human	ensembl	74_37	+1	known	missense	c.8	p.G3V	0.003	NULL	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel	-	no_errors	CHRNG	HGNC	ENSG00000196811				149	1	0.666667	147	41	21.8085
GIGYF2	0	genome.wustl.edu	37	2	233620987	233620987	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	233620987	233620987	G	T	SNP	GIGYF2	ENST00000373566	human	ensembl	74_37	+1	known	nonsense	c.322	p.G108*	1.000	NULL	pfam_GYF,superfamily_GYF,smart_GYF,pfscan_GYF	-	no_errors	GIGYF2	HGNC	ENSG00000204120				87	0	0	64	6	8.57143
NGEF	0	genome.wustl.edu	37	2	233744335	233744335	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	233744335	233744335	G	A	SNP	NGEF	ENST00000264051	human	ensembl	74_37	-1	known	missense	c.1997	p.S666F	0.492	pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_DH-domain,pfam_SH3_domain,pfam_SH3_2,superfamily_DH-domain,superfamily_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	NGEF	HGNC	ENSG00000066248				69	0	0	90	5	5.26316
NGEF	0	genome.wustl.edu	37	2	233785033	233785033	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	233785033	233785033	C	T	SNP	NGEF	ENST00000264051	human	ensembl	74_37	-1	known	silent	c.789	p.V263	1.000	superfamily_DH-domain	pfam_DH-domain,pfam_SH3_domain,pfam_SH3_2,superfamily_DH-domain,superfamily_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	NGEF	HGNC	ENSG00000066248				74	0	0	75	6	7.40741
INPP5D	0	genome.wustl.edu	37	2	234072495	234072495	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	234072495	234072495	G	A	SNP	INPP5D	ENST00000359570	human	ensembl	74_37	+1	known	nonsense	c.1347	p.W449*	1.000	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc	pfam_Endo/exonuclease/phosphatase,pfam_SH2,superfamily_Endo/exonuclease/phosphatase,smart_SH2,smart_IPPc,pfscan_SH2,prints_SH2	-	no_errors	INPP5D	HGNC	ENSG00000168918				58	0	0	62	5	7.46269
DGKD	0	genome.wustl.edu	37	2	234368890	234368890	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	234368890	234368890	G	A	SNP	DGKD	ENST00000264057	human	ensembl	74_37	+1	known	silent	c.2880	p.L960	0.998	NULL	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_SAM_2,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_SAM_type1,pfam_Pleckstrin_homology,superfamily_SAM/pointed,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,smart_SAM,pfscan_Pleckstrin_homology,pfscan_SAM,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	DGKD	HGNC	ENSG00000077044				57	0	0	48	6	11.1111
UGT1A5	0	genome.wustl.edu	37	2	234621647	234621647	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	234621647	234621647	G	T	SNP	UGT1A5	ENST00000373414	human	ensembl	74_37	+1	known	nonsense	c.10	p.G4*	0.004	NULL	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT1A5	HGNC	ENSG00000240224				47	0	0	43	3	6.52174
UGT1A5	0	genome.wustl.edu	37	2	234621927	234621927	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	234621927	234621927	C	T	SNP	UGT1A5	ENST00000373414	human	ensembl	74_37	+1	known	missense	c.290	p.T97I	0.000	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT1A5	HGNC	ENSG00000240224				125	0	0	104	14	11.8644
AGAP1	0	genome.wustl.edu	37	2	236945228	236945228	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	236945228	236945228	A	G	SNP	AGAP1	ENST00000304032	human	ensembl	74_37	+1	known	missense	c.1669	p.I557V	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_ArfGAP,pfam_MIRO-like,pfam_Small_GTPase,pfam_Ankyrin_rpt,pfam_Pleckstrin_homology,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP,prints_Small_GTPase	-	no_errors	AGAP1	HGNC	ENSG00000157985				154	0	0	122	8	6.15385
IQCA1	0	genome.wustl.edu	37	2	237374169	237374169	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	237374169	237374169	C	T	SNP	IQCA1	ENST00000409907	human	ensembl	74_37	-1	known	missense	c.905	p.R302Q	1.000	NULL	pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,pfscan_IQ_motif_EF-hand-BS	-	no_errors	IQCA1	HGNC	ENSG00000132321				52	0	0	45	5	10
COL6A3	0	genome.wustl.edu	37	2	238249610	238249610	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	238249610	238249610	T	A	SNP	COL6A3	ENST00000295550	human	ensembl	74_37	-1	known	missense	c.7949	p.D2650V	0.926	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,smart_VWF_A,smart_Prot_inh_Kunz-m,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL6A3	HGNC	ENSG00000163359				92	0	0	88	8	8.33333
COL6A3	0	genome.wustl.edu	37	2	238253585	238253585	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	238253585	238253585	G	A	SNP	COL6A3	ENST00000295550	human	ensembl	74_37	-1	known	silent	c.7173	p.Y2391	0.286	NULL	pfam_VWF_A,pfam_Collagen,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,smart_VWF_A,smart_Prot_inh_Kunz-m,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL6A3	HGNC	ENSG00000163359				53	0	0	37	8	17.7778
COL6A3	0	genome.wustl.edu	37	2	238285615	238285615	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	238285615	238285615	T	C	SNP	COL6A3	ENST00000295550	human	ensembl	74_37	-1	known	missense	c.2870	p.D957G	0.064	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,smart_VWF_A,smart_Prot_inh_Kunz-m,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL6A3	HGNC	ENSG00000163359				83	0	0	72	16	18.1818
COL6A3	0	genome.wustl.edu	37	2	238296650	238296650	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	238296650	238296650	A	G	SNP	COL6A3	ENST00000295550	human	ensembl	74_37	-1	known	missense	c.887	p.L296S	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,smart_VWF_A,smart_Prot_inh_Kunz-m,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL6A3	HGNC	ENSG00000163359				75	0	0	65	4	5.7971
COL6A3	0	genome.wustl.edu	37	2	238296676	238296676	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	238296676	238296676	G	A	SNP	COL6A3	ENST00000295550	human	ensembl	74_37	-1	known	silent	c.861	p.S287	0.982	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,smart_VWF_A,smart_Prot_inh_Kunz-m,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL6A3	HGNC	ENSG00000163359				95	0	0	60	20	25
COL6A3	0	genome.wustl.edu	37	2	238303419	238303419	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	238303419	238303419	C	T	SNP	COL6A3	ENST00000295550	human	ensembl	74_37	-1	known	missense	c.520	p.A174T	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,smart_VWF_A,smart_Prot_inh_Kunz-m,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL6A3	HGNC	ENSG00000163359				86	0	0	87	7	7.44681
RBM44	0	genome.wustl.edu	37	2	238725827	238725827	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	238725827	238725827	A	C	SNP	RBM44	ENST00000316997	human	ensembl	74_37	+1	known	missense	c.268	p.T90P	0.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM44	HGNC	ENSG00000177483				103	0	0	81	6	6.89655
SCLY	0	genome.wustl.edu	37	2	238999895	238999895	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	238999895	238999895	G	T	SNP	SCLY	ENST00000254663	human	ensembl	74_37	+1	known	missense	c.945	p.K315N	1.000	pfam_Aminotrans_V/Cys_dSase,superfamily_PyrdxlP-dep_Trfase,pirsf_Cysteine_dSase_NifS	pfam_Aminotrans_V/Cys_dSase,superfamily_PyrdxlP-dep_Trfase,pirsf_Cysteine_dSase_NifS	-	no_errors	SCLY	HGNC	ENSG00000132330				155	0	0	148	12	7.5
ESPNL	0	genome.wustl.edu	37	2	239040248	239040248	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	239040248	239040248	G	A	SNP	ESPNL	ENST00000343063	human	ensembl	74_37	+1	known	missense	c.2893	p.A965T	0.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ESPNL	HGNC	ENSG00000144488				36	0	0	40	3	6.97674
ATAD2B	0	genome.wustl.edu	37	2	24033224	24033224	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	24033224	24033224	A	G	SNP	ATAD2B	ENST00000238789	human	ensembl	74_37	-1	known	missense	c.2416	p.S806P	1.000	superfamily_P-loop_NTPase	pfam_ATPase_AAA_core,pfam_Bromodomain,pfam_IstB_ATP-bd,superfamily_P-loop_NTPase,superfamily_Bromodomain,smart_AAA+_ATPase,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	ATAD2B	HGNC	ENSG00000119778				92	0	0	69	4	5.47945
ATAD2B	0	genome.wustl.edu	37	2	24046213	24046213	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	24046213	24046213	C	T	SNP	ATAD2B	ENST00000238789	human	ensembl	74_37	-1	known	silent	c.2046	p.L682	1.000	NULL	pfam_ATPase_AAA_core,pfam_Bromodomain,pfam_IstB_ATP-bd,superfamily_P-loop_NTPase,superfamily_Bromodomain,smart_AAA+_ATPase,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	ATAD2B	HGNC	ENSG00000119778				49	0	0	27	4	12.9032
OR6B3	0	genome.wustl.edu	37	2	240985382	240985382	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	240985382	240985382	G	A	SNP	OR6B3	ENST00000319423	human	ensembl	74_37	-1	known	silent	c.108	p.L36	0.692	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6B3	HGNC	ENSG00000178586				82	0	0	74	7	8.64198
RNPEPL1	0	genome.wustl.edu	37	2	241513717	241513717	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	241513717	241513717	G	A	SNP	RNPEPL1	ENST00000270357	human	ensembl	74_37	+1	known	missense	c.433	p.E145K	1.000	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	pfam_Peptidase_M1_C,pfam_Peptidase_M1_N,superfamily_ARM-type_fold,prints_Peptidase_M1_N	-	no_errors	RNPEPL1	HGNC	ENSG00000142327				50	0	0	36	11	23.4043
KIF1A	0	genome.wustl.edu	37	2	241689868	241689868	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	241689868	241689868	G	A	SNP	KIF1A	ENST00000498729	human	ensembl	74_37	-1	known	silent	c.2955	p.R985	0.130	NULL	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_Pleckstrin_homology,pfam_KIF1B,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,smart_FHA_dom,smart_Pleckstrin_homology,pfscan_FHA_dom,pfscan_Pleckstrin_homology,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF1A	HGNC	ENSG00000130294				32	0	0	37	6	13.9535
UBXN2A	0	genome.wustl.edu	37	2	24194218	24194218	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	24194218	24194218	T	A	SNP	UBXN2A	ENST00000309033	human	ensembl	74_37	+1	known	missense	c.114	p.D38E	0.964	NULL	pfam_SEP_domain,pfam_UBX,superfamily_SEP_domain,smart_SEP_domain,smart_UBX,pfscan_UBX	-	no_errors	UBXN2A	HGNC	ENSG00000173960				218	0	0	163	15	8.42697
SNED1	0	genome.wustl.edu	37	2	241992711	241992711	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	241992711	241992711	A	G	SNP	SNED1	ENST00000310397	human	ensembl	74_37	+1	known	missense	c.2225	p.H742R	0.013	superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_EG-like_dom,pfam_Fibronectin_type3,pfam_Nidogen_extracell_dom,pfam_EGF_extracell,pfam_EGF-like_Ca-bd_dom,superfamily_Fibronectin_type3,superfamily_Sushi_SCR_CCP,smart_Nidogen_extracell_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Sushi_SCR_CCP,smart_Fibronectin_type3,pfscan_EG-like_dom,pfscan_Fibronectin_type3,pfscan_Sushi_SCR_CCP	-	no_errors	SNED1	HGNC	ENSG00000162804				75	0	0	71	8	10.1266
SNED1	0	genome.wustl.edu	37	2	242009574	242009574	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	242009574	242009574	G	A	SNP	SNED1	ENST00000310397	human	ensembl	74_37	+1	known	missense	c.3547	p.G1183R	0.965	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_EG-like_dom,pfam_Fibronectin_type3,pfam_Nidogen_extracell_dom,pfam_EGF_extracell,pfam_EGF-like_Ca-bd_dom,superfamily_Fibronectin_type3,superfamily_Sushi_SCR_CCP,smart_Nidogen_extracell_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Sushi_SCR_CCP,smart_Fibronectin_type3,pfscan_EG-like_dom,pfscan_Fibronectin_type3,pfscan_Sushi_SCR_CCP	-	no_errors	SNED1	HGNC	ENSG00000162804				12	0	0	11	3	21.4286
SNED1	0	genome.wustl.edu	37	2	242021174	242021174	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	242021174	242021174	C	T	SNP	SNED1	ENST00000310397	human	ensembl	74_37	+1	known	silent	c.3999	p.C1333	0.055	pfam_EG-like_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	pfam_EG-like_dom,pfam_Fibronectin_type3,pfam_Nidogen_extracell_dom,pfam_EGF_extracell,pfam_EGF-like_Ca-bd_dom,superfamily_Fibronectin_type3,superfamily_Sushi_SCR_CCP,smart_Nidogen_extracell_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Sushi_SCR_CCP,smart_Fibronectin_type3,pfscan_EG-like_dom,pfscan_Fibronectin_type3,pfscan_Sushi_SCR_CCP	-	no_errors	SNED1	HGNC	ENSG00000162804				19	0	0	11	4	26.6667
UBXN2A	0	genome.wustl.edu	37	2	24205770	24205770	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	24205770	24205770	T	A	SNP	UBXN2A	ENST00000309033	human	ensembl	74_37	+1	known	missense	c.292	p.L98I	0.994	pfam_SEP_domain,superfamily_SEP_domain,smart_SEP_domain	pfam_SEP_domain,pfam_UBX,superfamily_SEP_domain,smart_SEP_domain,smart_UBX,pfscan_UBX	-	no_errors	UBXN2A	HGNC	ENSG00000173960				106	0	0	69	5	6.75676
PASK	0	genome.wustl.edu	37	2	242066830	242066830	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	242066830	242066830	G	A	SNP	PASK	ENST00000358649	human	ensembl	74_37	-1	known	silent	c.1500	p.H500	0.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PAS_fold,superfamily_Kinase-like_dom,superfamily_PAS,smart_PAS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_PAS,pfscan_Prot_kinase_dom,tigrfam_PAS	-	no_errors	PASK	HGNC	ENSG00000115687				95	0	0	65	20	23.5294
PPP1R7	0	genome.wustl.edu	37	2	242122098	242122098	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	242122098	242122098	G	A	SNP	PPP1R7	ENST00000234038	human	ensembl	74_37	+1	known	missense	c.943	p.D315N	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_U2A'_phosphoprotein32A_C	-	no_errors	PPP1R7	HGNC	ENSG00000115685				85	0	0	66	8	10.8108
BOK	0	genome.wustl.edu	37	2	242501857	242501857	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	242501857	242501857	G	A	SNP	BOK	ENST00000318407	human	ensembl	74_37	+1	known	silent	c.315	p.A105	0.755	pfam_Blc2_fam,pfscan_Bcl2-like	pfam_Blc2_fam,pfscan_Bcl2-like,prints_Blc2_fam	-	no_errors	BOK	HGNC	ENSG00000176720				44	0	0	50	11	18.0328
D2HGDH	0	genome.wustl.edu	37	2	242690780	242690780	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	242690780	242690780	G	A	SNP	D2HGDH	ENST00000321264	human	ensembl	74_37	+1	known	missense	c.1117	p.A373T	1.000	pfam_FAD-linked_oxidase_C,superfamily_FAD-linked_Oxase-like_C	pfam_FAD-linked_oxidase_C,pfam_Oxid_FAD_bind_N,superfamily_FAD-bd_2,superfamily_FAD-linked_Oxase-like_C	-	no_errors	D2HGDH	HGNC	ENSG00000180902				57	0	0	33	5	13.1579
ITSN2	0	genome.wustl.edu	37	2	24493619	24493619	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	24493619	24493619	A	G	SNP	ITSN2	ENST00000355123	human	ensembl	74_37	-1	known	missense	c.2276	p.L759S	1.000	superfamily_SH3_domain,pfscan_SH3_domain	pfam_SH3_domain,pfam_SH3_2,pfam_DH-domain,pfam_C2_dom,superfamily_DH-domain,superfamily_C2_dom,superfamily_SH3_domain,smart_EPS15_homology,smart_EF_hand_dom,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_C2_dom,pfscan_EF_hand_dom,pfscan_EPS15_homology,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain,prints_SH3_domain,prints_p67phox	-	no_errors	ITSN2	HGNC	ENSG00000198399				110	0	0	77	9	10.4651
ITSN2	0	genome.wustl.edu	37	2	24533475	24533475	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	24533475	24533475	T	A	SNP	ITSN2	ENST00000355123	human	ensembl	74_37	-1	known	missense	c.439	p.T147S	1.000	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_DH-domain,pfam_C2_dom,superfamily_DH-domain,superfamily_C2_dom,superfamily_SH3_domain,smart_EPS15_homology,smart_EF_hand_dom,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_C2_dom,pfscan_EF_hand_dom,pfscan_EPS15_homology,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain,prints_SH3_domain,prints_p67phox	-	no_errors	ITSN2	HGNC	ENSG00000198399				91	0	0	54	5	8.47458
NCOA1	0	genome.wustl.edu	37	2	24927967	24927967	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	24927967	24927967	G	A	SNP	NCOA1	ENST00000348332	human	ensembl	74_37	+1	known	missense	c.962	p.G321D	1.000	superfamily_PAS,pirsf_Nuclear_rcpt_coactivator	pfam_DUF1518,pfam_SRC-1,pfam_Nuc_rcpt_coact_Ncoa-typ,pfam_PAS_fold,superfamily_PAS,superfamily_Nuc_rcpt_coact,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,pirsf_Nuclear_rcpt_coactivator,pfscan_PAS,pfscan_bHLH_dom	-	no_errors	NCOA1	HGNC	ENSG00000084676				94	0	0	83	7	7.77778
NCOA1	0	genome.wustl.edu	37	2	24929562	24929562	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	24929562	24929562	C	T	SNP	NCOA1	ENST00000348332	human	ensembl	74_37	+1	known	missense	c.1223	p.P408L	1.000	pirsf_Nuclear_rcpt_coactivator	pfam_DUF1518,pfam_SRC-1,pfam_Nuc_rcpt_coact_Ncoa-typ,pfam_PAS_fold,superfamily_PAS,superfamily_Nuc_rcpt_coact,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,pirsf_Nuclear_rcpt_coactivator,pfscan_PAS,pfscan_bHLH_dom	-	no_errors	NCOA1	HGNC	ENSG00000084676				95	0	0	66	6	8.33333
CENPO	0	genome.wustl.edu	37	2	25037355	25037355	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	25037355	25037355	T	A	SNP	CENPO	ENST00000260662	human	ensembl	74_37	+1	known	missense	c.327	p.H109Q	0.933	NULL	pfam_CENP-O	-	no_errors	CENPO	HGNC	ENSG00000138092				112	0	0	100	9	8.25688
POMC	0	genome.wustl.edu	37	2	25384290	25384290	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	25384290	25384290	C	T	SNP	POMC	ENST00000264708	human	ensembl	74_37	-1	known	missense	c.464	p.R155H	1.000	pfam_Mcrtin_ACTH_cent,prints_Mcortin_ACTH	pfam_Mcrtin_ACTH_cent,pfam_Melanocortin_N,pfam_Opioid_neuropept,prints_Mcortin_ACTH	-	no_errors	POMC	HGNC	ENSG00000115138				21	0	0	19	5	20.8333
DNMT3A	0	genome.wustl.edu	37	2	25463242	25463242	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	25463242	25463242	A	T	SNP	DNMT3A	ENST00000264709	human	ensembl	74_37	-1	known	missense	c.2251	p.F751I	1.000	pfam_C5_MeTfrase	pfam_PWWP_dom,pfam_C5_MeTfrase,superfamily_Znf_FYVE_PHD,smart_PWWP_dom,pfscan_PWWP_dom	-	no_errors	DNMT3A	HGNC	ENSG00000119772				136	0	0	95	12	11.215
HADHA	0	genome.wustl.edu	37	2	26437359	26437359	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	26437359	26437359	G	A	SNP	HADHA	ENST00000380649	human	ensembl	74_37	-1	known	nonsense	c.871	p.R291*	0.976	tigrfam_Fa_ox_alpha_mit	pfam_Crotonase_core_superfam,pfam_3-OHacyl-CoA_DH_NAD-bd,pfam_3HC_DH_C,superfamily_6-PGluconate_DH_C-like,tigrfam_Fa_ox_alpha_mit	-	no_errors	HADHA	HGNC	ENSG00000084754				119	0	0	76	23	23.2323
HADHB	0	genome.wustl.edu	37	2	26502916	26502916	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	26502916	26502916	T	C	SNP	HADHB	ENST00000317799	human	ensembl	74_37	+1	known	missense	c.866	p.M289T	1.000	pfam_Thiolase_N,superfamily_Thiolase-like,tigrfam_Thiolase	pfam_Thiolase_N,pfam_Thiolase_C,pfam_Ketoacyl_synth_N,superfamily_Thiolase-like,tigrfam_Thiolase	-	no_errors	HADHB	HGNC	ENSG00000138029				130	0	0	84	6	6.66667
DRC1	0	genome.wustl.edu	37	2	26644259	26644259	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	26644259	26644259	A	C	SNP	DRC1	ENST00000288710	human	ensembl	74_37	+1	known	missense	c.347	p.K116T	0.997	NULL	NULL	-	no_errors	DRC1	HGNC	ENSG00000157856				47	0	0	37	4	9.7561
DRC1	0	genome.wustl.edu	37	2	26676390	26676390	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	26676390	26676390	C	T	SNP	DRC1	ENST00000288710	human	ensembl	74_37	+1	known	missense	c.1892	p.A631V	1.000	NULL	NULL	-	no_errors	DRC1	HGNC	ENSG00000157856				63	0	0	56	16	22.2222
OTOF	0	genome.wustl.edu	37	2	26695445	26695445	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	26695445	26695445	A	G	SNP	OTOF	ENST00000272371	human	ensembl	74_37	-1	known	missense	c.3806	p.V1269A	1.000	superfamily_C2_dom	pfam_C2_dom,pfam_Ferlin_B-domain,pfam_FerIin-domain,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	OTOF	HGNC	ENSG00000115155				35	0	0	53	10	15.873
OTOF	0	genome.wustl.edu	37	2	26702518	26702518	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	26702518	26702518	T	C	SNP	OTOF	ENST00000272371	human	ensembl	74_37	-1	known	missense	c.1916	p.N639S	1.000	NULL	pfam_C2_dom,pfam_Ferlin_B-domain,pfam_FerIin-domain,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	OTOF	HGNC	ENSG00000115155				54	0	0	56	5	8.19672
OTOF	0	genome.wustl.edu	37	2	26741942	26741942	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	26741942	26741942	A	G	SNP	OTOF	ENST00000272371	human	ensembl	74_37	-1	known	missense	c.263	p.V88A	1.000	superfamily_C2_dom,smart_C2_dom	pfam_C2_dom,pfam_Ferlin_B-domain,pfam_FerIin-domain,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	OTOF	HGNC	ENSG00000115155				22	0	0	19	4	17.3913
DPYSL5	0	genome.wustl.edu	37	2	27162933	27162933	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	27162933	27162933	C	T	SNP	DPYSL5	ENST00000288699	human	ensembl	74_37	+1	known	missense	c.982	p.P328S	1.000	pfam_Amidohydro_1,tigrfam_Hydantoinase/dihydroPyrase	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	-	no_errors	DPYSL5	HGNC	ENSG00000157851				109	0	0	81	31	27.6786
AGBL5	0	genome.wustl.edu	37	2	27276785	27276785	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	27276785	27276785	T	A	SNP	AGBL5	ENST00000360131	human	ensembl	74_37	+1	known	missense	c.409	p.L137I	1.000	NULL	pfam_Peptidase_M14	-	no_errors	AGBL5	HGNC	ENSG00000084693				108	0	0	99	13	11.6071
CAD	0	genome.wustl.edu	37	2	27449763	27449763	+	Silent	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	27449763	27449763	T	A	SNP	CAD	ENST00000264705	human	ensembl	74_37	+1	known	silent	c.2220	p.I740	0.999	tigrfam_CarbamoylP_synth_lsu	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_ssu_N,pfam_Asp/Orn_carbamoyltranf_P-bd,pfam_GATASE,pfam_Asp_carbamoyltransf_Asp/Orn-bd,pfam_CarbamoylP_synth_lsu_oligo,pfam_CarbamoylP_synth_lsu_N,pfam_ATP-grasp_carboxylate-amine,pfam_MGS-like_dom,pfam_Dala_Dala_lig_C,pfam_Amidohydro_1,superfamily_Asp/Orn_carbamoylTrfase,superfamily_CarbamoylP_synth_lsu_oligo,superfamily_CarbamoylP_synth_ssu_N,superfamily_PreATP-grasp_dom,superfamily_MGS-like_dom,superfamily_Metal-dep_hydrolase_composite,smart_MGS-like_dom,pfscan_ATP-grasp,prints_CbamoylP_synth_lsu_CPSase_dom,prints_Asp_carbamoyltransf,prints_Asp/Orn_carbamoylTrfase,tigrfam_CarbamoylP_synth_lsu,tigrfam_CarbamoylP_synth_ssu,tigrfam_Asp_carbamoyltransf	-	no_errors	CAD	HGNC	ENSG00000084774				130	0	0	146	23	13.6095
TRIM54	0	genome.wustl.edu	37	2	27529138	27529138	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	27529138	27529138	C	A	SNP	TRIM54	ENST00000296098	human	ensembl	74_37	+1	known	missense	c.1050	p.S350R	1.000	NULL	pfam_Znf_C3HC4_RING-type,pfam_Znf_B-box,superfamily_Chorismate_mutase_type_II,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM54	HGNC	ENSG00000138100				58	0	0	71	7	8.97436
GTF3C2	0	genome.wustl.edu	37	2	27560373	27560373	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	27560373	27560373	A	G	SNP	GTF3C2	ENST00000264720	human	ensembl	74_37	-1	known	missense	c.1003	p.W335R	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	GTF3C2	HGNC	ENSG00000115207				77	0	0	59	11	15.7143
IFT172	0	genome.wustl.edu	37	2	27680796	27680796	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	27680796	27680796	T	C	SNP	IFT172	ENST00000260570	human	ensembl	74_37	-1	known	missense	c.3023	p.K1008R	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat	-	no_errors	IFT172	HGNC	ENSG00000138002				102	0	0	94	11	10.4762
IFT172	0	genome.wustl.edu	37	2	27682682	27682682	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	27682682	27682682	G	A	SNP	IFT172	ENST00000260570	human	ensembl	74_37	-1	known	nonsense	c.2536	p.R846*	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat	-	no_errors	IFT172	HGNC	ENSG00000138002				161	0	0	130	37	22.1557
C2orf16	0	genome.wustl.edu	37	2	27800214	27800214	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	27800214	27800214	A	G	SNP	C2orf16	ENST00000408964	human	ensembl	74_37	+1	known	missense	c.775	p.T259A	0.000	NULL	NULL	-	no_errors	C2orf16	HGNC	ENSG00000221843				127	0	0	122	9	6.87023
C2orf16	0	genome.wustl.edu	37	2	27804215	27804215	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	27804215	27804215	T	A	SNP	C2orf16	ENST00000408964	human	ensembl	74_37	+1	known	missense	c.4776	p.S1592R	0.008	NULL	NULL	-	no_errors	C2orf16	HGNC	ENSG00000221843				131	0	0	107	6	5.30973
PLB1	0	genome.wustl.edu	37	2	28739692	28739692	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	28739692	28739692	A	G	SNP	PLB1	ENST00000422425	human	ensembl	74_37	+1	known	missense	c.73	p.T25A	0.000	NULL	pfam_Lipase_GDSL	-	no_errors	PLB1	HGNC	ENSG00000163803				135	0	0	108	12	10
C2orf71	0	genome.wustl.edu	37	2	29287753	29287753	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	29287753	29287753	C	A	SNP	C2orf71	ENST00000331664	human	ensembl	74_37	-1	known	missense	c.3849	p.Q1283H	0.003	NULL	NULL	-	no_errors	C2orf71	HGNC	ENSG00000179270				26	0	0	27	4	12.9032
CLIP4	0	genome.wustl.edu	37	2	29386758	29386758	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	29386758	29386758	T	C	SNP	CLIP4	ENST00000320081	human	ensembl	74_37	+1	known	silent	c.1596	p.G532	1.000	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,pfscan_CAP-Gly_domain	pfam_CAP-Gly_domain,pfam_Ankyrin_rpt,superfamily_CAP-Gly_domain,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_CAP-Gly_domain	-	no_errors	CLIP4	HGNC	ENSG00000115295				110	1	0.900901	88	9	9.27835
YPEL5	0	genome.wustl.edu	37	2	30381637	30381637	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	30381637	30381637	C	T	SNP	YPEL5	ENST00000261353	human	ensembl	74_37	+1	known	silent	c.294	p.R98	0.703	pfam_Yippee/Mis18	pfam_Yippee/Mis18	-	no_errors	YPEL5	HGNC	ENSG00000119801				92	0	0	87	7	7.44681
LCLAT1	0	genome.wustl.edu	37	2	30682536	30682536	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	30682536	30682536	G	A	SNP	LCLAT1	ENST00000309052	human	ensembl	74_37	+1	known	missense	c.58	p.A20T	0.000	NULL	pfam_Plipid/glycerol_acylTrfase,smart_Plipid/glycerol_acylTrfase	-	no_errors	LCLAT1	HGNC	ENSG00000172954				260	0	0	180	24	11.7647
EHD3	0	genome.wustl.edu	37	2	31489241	31489241	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	31489241	31489241	G	T	SNP	EHD3	ENST00000322054	human	ensembl	74_37	+1	known	missense	c.1279	p.G427W	1.000	NULL	pfam_Dynamin_GTPase,superfamily_P-loop_NTPase,smart_EPS15_homology,pfscan_EF_hand_dom,pfscan_EPS15_homology	-	no_errors	EHD3	HGNC	ENSG00000013016				34	0	0	30	3	9.09091
XDH	0	genome.wustl.edu	37	2	31562486	31562486	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	31562486	31562486	A	G	SNP	XDH	ENST00000379416	human	ensembl	74_37	-1	known	missense	c.3643	p.S1215P	1.000	pfam_AldOxase/xan_DH_Mopterin-bd,superfamily_AldOxase/xan_DH_Mopterin-bd,pirsf_Ald_Oxase/xanthine_DH	pfam_AldOxase/xan_DH_Mopterin-bd,pfam_Mopterin_DH_FAD-bd,pfam_Ald_Oxase/Xan_DH_a/b,pfam_2Fe-2S-bd,pfam_CO_DH_flav_C,pfam_2Fe-2S_ferredoxin-type,superfamily_AldOxase/xan_DH_Mopterin-bd,superfamily_FAD-bd_2,superfamily_Ald_Oxase/Xan_DH_a/b,superfamily_2Fe-2S-bd,superfamily_CO_DH_flav_C,superfamily_2Fe-2S_ferredoxin-type,pirsf_Ald_Oxase/xanthine_DH,pfscan_2Fe-2S_ferredoxin-type,tigrfam_Xanthine_DH_ssu	-	no_errors	XDH	HGNC	ENSG00000158125				66	0	0	75	7	8.53659
XDH	0	genome.wustl.edu	37	2	31588888	31588888	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	31588888	31588888	T	C	SNP	XDH	ENST00000379416	human	ensembl	74_37	-1	known	missense	c.2410	p.T804A	1.000	pfam_AldOxase/xan_DH_Mopterin-bd,superfamily_AldOxase/xan_DH_Mopterin-bd,pirsf_Ald_Oxase/xanthine_DH	pfam_AldOxase/xan_DH_Mopterin-bd,pfam_Mopterin_DH_FAD-bd,pfam_Ald_Oxase/Xan_DH_a/b,pfam_2Fe-2S-bd,pfam_CO_DH_flav_C,pfam_2Fe-2S_ferredoxin-type,superfamily_AldOxase/xan_DH_Mopterin-bd,superfamily_FAD-bd_2,superfamily_Ald_Oxase/Xan_DH_a/b,superfamily_2Fe-2S-bd,superfamily_CO_DH_flav_C,superfamily_2Fe-2S_ferredoxin-type,pirsf_Ald_Oxase/xanthine_DH,pfscan_2Fe-2S_ferredoxin-type,tigrfam_Xanthine_DH_ssu	-	no_errors	XDH	HGNC	ENSG00000158125				94	0	0	74	6	7.5
DPY30	0	genome.wustl.edu	37	2	32093388	32093388	+	RNA	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	32093388	32093388	A	G	SNP	DPY30	ENST00000446765	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.991	-	-	-	no_errors	DPY30	HGNC	ENSG00000162961				23	0	0	21	3	12.5
SLC30A6	0	genome.wustl.edu	37	2	32417985	32417985	+	Splice_Site	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	32417985	32417985	A	G	SNP	SLC30A6	ENST00000282587	human	ensembl	74_37	+1	known	splice_site	c.366-2	e7-2	1.000	-	-	-	no_errors	SLC30A6	HGNC	ENSG00000152683				96	0	0	49	5	9.25926
NLRC4	0	genome.wustl.edu	37	2	32476209	32476209	+	Silent	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	32476209	32476209	T	G	SNP	NLRC4	ENST00000360906	human	ensembl	74_37	-1	known	silent	c.724	p.R242	0.027	superfamily_P-loop_NTPase,pfscan_NACHT_NTPase	pfam_CARD,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,pfscan_NACHT_NTPase,pfscan_CARD	-	no_errors	NLRC4	HGNC	ENSG00000091106				139	0	0	112	9	7.43802
BIRC6	0	genome.wustl.edu	37	2	32694625	32694625	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	32694625	32694625	C	T	SNP	BIRC6	ENST00000421745	human	ensembl	74_37	+1	known	missense	c.6290	p.S2097F	1.000	NULL	pfam_DUF3643,pfam_UBQ-conjugat_E2,pfam_BIR,pfam_UEV_N,superfamily_UBQ-conjugating_enzyme/RWD,superfamily_Galactose-bd-like,superfamily_WD40_repeat_dom,smart_BIR,pfscan_BIR,pfscan_UBQ-conjugat_E2	-	no_errors	BIRC6	HGNC	ENSG00000115760				298	0	0	237	13	5.2
BIRC6	0	genome.wustl.edu	37	2	32724640	32724640	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	32724640	32724640	C	A	SNP	BIRC6	ENST00000421745	human	ensembl	74_37	+1	known	missense	c.8495	p.P2832H	1.000	NULL	pfam_DUF3643,pfam_UBQ-conjugat_E2,pfam_BIR,pfam_UEV_N,superfamily_UBQ-conjugating_enzyme/RWD,superfamily_Galactose-bd-like,superfamily_WD40_repeat_dom,smart_BIR,pfscan_BIR,pfscan_UBQ-conjugat_E2	-	no_errors	BIRC6	HGNC	ENSG00000115760				38	0	0	29	3	9.375
TTC27	0	genome.wustl.edu	37	2	33036137	33036137	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	33036137	33036137	G	A	SNP	TTC27	ENST00000317907	human	ensembl	74_37	+1	known	missense	c.2045	p.R682Q	0.985	NULL	pfam_TPR_2,pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC27	HGNC	ENSG00000018699				86	0	0	59	6	9.23077
LTBP1	0	genome.wustl.edu	37	2	33589422	33589422	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	33589422	33589422	C	T	SNP	LTBP1	ENST00000354476	human	ensembl	74_37	+1	known	silent	c.4542	p.N1514	0.998	NULL	pfam_EGF-like_Ca-bd_dom,pfam_TB_dom,pfam_EG-like_dom,superfamily_TB_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	LTBP1	HGNC	ENSG00000049323				46	0	0	44	4	8.33333
LTBP1	0	genome.wustl.edu	37	2	33589423	33589423	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	33589423	33589423	G	A	SNP	LTBP1	ENST00000354476	human	ensembl	74_37	+1	known	missense	c.4543	p.E1515K	1.000	NULL	pfam_EGF-like_Ca-bd_dom,pfam_TB_dom,pfam_EG-like_dom,superfamily_TB_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	LTBP1	HGNC	ENSG00000049323				47	0	0	42	3	6.66667
FAM98A	0	genome.wustl.edu	37	2	33810274	33810274	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	33810274	33810274	C	T	SNP	FAM98A	ENST00000238823	human	ensembl	74_37	-1	known	missense	c.1126	p.G376R	1.000	NULL	pfam_Uncharacterised_FAM98	-	no_errors	FAM98A	HGNC	ENSG00000119812				116	0	0	85	38	30.8943
TRAPPC12	0	genome.wustl.edu	37	2	3392316	3392316	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	3392316	3392316	G	A	SNP	TRAPPC12	ENST00000324266	human	ensembl	74_37	+1	known	missense	c.922	p.D308N	1.000	NULL	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TRAPPC12	HGNC	ENSG00000171853				29	0	0	28	7	20
TRAPPC12	0	genome.wustl.edu	37	2	3392319	3392319	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	3392319	3392319	G	A	SNP	TRAPPC12	ENST00000324266	human	ensembl	74_37	+1	known	missense	c.925	p.A309T	1.000	NULL	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TRAPPC12	HGNC	ENSG00000171853				27	0	0	28	7	20
RPS7	0	genome.wustl.edu	37	2	3627805	3627805	+	Silent	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	3627805	3627805	A	T	SNP	RPS7	ENST00000304921	human	ensembl	74_37	+1	known	silent	c.462	p.I154	0.997	pfam_Ribosomal_S7e	pfam_Ribosomal_S7e	-	no_errors	RPS7	HGNC	ENSG00000171863				126	0	0	76	10	11.6279
CRIM1	0	genome.wustl.edu	37	2	36764546	36764546	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	36764546	36764546	C	T	SNP	CRIM1	ENST00000280527	human	ensembl	74_37	+1	known	missense	c.2480	p.A827V	0.668	pfam_VWF_C,smart_VWC_out,smart_VWF_C,pfscan_VWF_C	pfam_VWF_C,pfam_Antistasin-like,superfamily_Hirudin/antistatin,smart_IGFBP-like,smart_VWC_out,smart_VWF_C,pfscan_VWF_C	-	no_errors	CRIM1	HGNC	ENSG00000150938				69	0	0	72	8	10
VIT	0	genome.wustl.edu	37	2	36982084	36982084	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	36982084	36982084	G	A	SNP	VIT	ENST00000379242	human	ensembl	74_37	+1	known	missense	c.296	p.G99E	1.000	pfam_LCCL,superfamily_LCCL,smart_LCCL,pfscan_LCCL	pfam_VWF_A,pfam_LCCL,superfamily_LCCL,smart_LCCL,smart_VWF_A,pfscan_LCCL,pfscan_VWF_A	-	no_errors	VIT	HGNC	ENSG00000205221				80	0	0	55	16	22.5352
HEATR5B	0	genome.wustl.edu	37	2	37255304	37255304	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	37255304	37255304	T	C	SNP	HEATR5B	ENST00000233099	human	ensembl	74_37	-1	known	silent	c.3615	p.A1205	0.107	NULL	superfamily_ARM-type_fold	-	no_errors	HEATR5B	HGNC	ENSG00000008869				85	0	0	49	6	10.9091
HEATR5B	0	genome.wustl.edu	37	2	37255956	37255956	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	37255956	37255956	G	A	SNP	HEATR5B	ENST00000233099	human	ensembl	74_37	-1	known	silent	c.3469	p.L1157	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	HEATR5B	HGNC	ENSG00000008869				111	0	0	107	10	8.54701
SULT6B1	0	genome.wustl.edu	37	2	37402358	37402358	+	Silent	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	37402358	37402358	T	G	SNP	SULT6B1	ENST00000535679	human	ensembl	74_37	-1	known	silent	c.541	p.R181	1.000	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	SULT6B1	HGNC	ENSG00000138068				43	0	0	20	5	20
ALLC	0	genome.wustl.edu	37	2	3743888	3743888	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	3743888	3743888	G	A	SNP	ALLC	ENST00000252505	human	ensembl	74_37	+1	known	missense	c.691	p.A231T	0.713	pfam_Allantoicase_dom,superfamily_Galactose-bd-like,tigrfam_Allantoicase	pfam_Allantoicase_dom,superfamily_Galactose-bd-like,tigrfam_Allantoicase	-	no_errors	ALLC	HGNC	ENSG00000151360				65	0	0	41	4	8.88889
CEBPZ	0	genome.wustl.edu	37	2	37442030	37442030	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	37442030	37442030	T	C	SNP	CEBPZ	ENST00000234170	human	ensembl	74_37	-1	known	missense	c.2446	p.R816G	1.000	superfamily_ARM-type_fold	pfam_CCAAT-binding_factor,superfamily_ARM-type_fold	-	no_errors	CEBPZ	HGNC	ENSG00000115816				88	0	0	57	5	8.06452
ALLC	0	genome.wustl.edu	37	2	3744991	3744991	+	Silent	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	3744991	3744991	A	T	SNP	ALLC	ENST00000252505	human	ensembl	74_37	+1	known	silent	c.795	p.R265	0.131	pfam_Allantoicase_dom,superfamily_Galactose-bd-like,tigrfam_Allantoicase	pfam_Allantoicase_dom,superfamily_Galactose-bd-like,tigrfam_Allantoicase	-	no_errors	ALLC	HGNC	ENSG00000151360				197	0	0	128	9	6.56934
CEBPZ	0	genome.wustl.edu	37	2	37454697	37454697	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	37454697	37454697	C	T	SNP	CEBPZ	ENST00000234170	human	ensembl	74_37	-1	known	missense	c.1639	p.A547T	1.000	pfam_CCAAT-binding_factor,superfamily_ARM-type_fold	pfam_CCAAT-binding_factor,superfamily_ARM-type_fold	-	no_errors	CEBPZ	HGNC	ENSG00000115816				139	0	0	91	18	16.5138
CEBPZ	0	genome.wustl.edu	37	2	37454859	37454859	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	37454859	37454859	C	T	SNP	CEBPZ	ENST00000234170	human	ensembl	74_37	-1	known	missense	c.1477	p.A493T	1.000	superfamily_ARM-type_fold	pfam_CCAAT-binding_factor,superfamily_ARM-type_fold	-	no_errors	CEBPZ	HGNC	ENSG00000115816				69	0	0	58	7	10.7692
NDUFAF7	0	genome.wustl.edu	37	2	37459358	37459358	+	Silent	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	37459358	37459358	T	A	SNP	NDUFAF7	ENST00000002125	human	ensembl	74_37	+1	known	silent	c.165	p.G55	0.844	NULL	pfam_MidA	-	no_errors	NDUFAF7	HGNC	ENSG00000003509				120	0	0	99	6	5.71429
NDUFAF7	0	genome.wustl.edu	37	2	37474636	37474636	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	37474636	37474636	C	T	SNP	NDUFAF7	ENST00000002125	human	ensembl	74_37	+1	known	missense	c.974	p.A325V	0.843	pfam_MidA	pfam_MidA	-	no_errors	NDUFAF7	HGNC	ENSG00000003509				115	0	0	74	9	10.8434
CDC42EP3	0	genome.wustl.edu	37	2	37873127	37873127	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	37873127	37873127	C	T	SNP	CDC42EP3	ENST00000295324	human	ensembl	74_37	-1	known	missense	c.604	p.E202K	0.975	NULL	pfam_CRIB_dom,smart_CRIB_dom,pfscan_CRIB_dom	-	no_errors	CDC42EP3	HGNC	ENSG00000163171				88	0	0	47	18	27.6923
SRSF7	0	genome.wustl.edu	37	2	38975244	38975244	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	38975244	38975244	A	T	SNP	SRSF7	ENST00000313117	human	ensembl	74_37	-1	known	missense	c.517	p.S173T	1.000	NULL	pfam_RRM_dom,superfamily_Znf_CCHC,smart_RRM_dom,pfscan_Znf_CCHC,pfscan_RRM_dom	-	no_errors	SRSF7	HGNC	ENSG00000115875				85	0	0	57	5	8.06452
DHX57	0	genome.wustl.edu	37	2	39083499	39083499	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	39083499	39083499	G	A	SNP	DHX57	ENST00000295373	human	ensembl	74_37	-1	known	silent	c.1692	p.V564	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_RWD-domain,pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Znf_CCCH,superfamily_P-loop_NTPase,superfamily_UBA-like,superfamily_UBQ-conjugating_enzyme/RWD,smart_Znf_CCCH,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX57	HGNC	ENSG00000163214				87	0	0	71	10	12.3457
SOS1	0	genome.wustl.edu	37	2	39222407	39222407	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	39222407	39222407	A	T	SNP	SOS1	ENST00000402219	human	ensembl	74_37	-1	known	missense	c.3203	p.I1068N	1.000	NULL	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Histone_core_D,superfamily_Ras_GEF_dom,superfamily_Histone-fold,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_Pleckstrin_homology,pfscan_DH-domain,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	SOS1	HGNC	ENSG00000115904				128	0	0	105	7	6.25
MAP4K3	0	genome.wustl.edu	37	2	39481646	39481646	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	39481646	39481646	C	A	SNP	MAP4K3	ENST00000263881	human	ensembl	74_37	-1	known	missense	c.2486	p.S829I	1.000	pfam_Citron,smart_Citron	pfam_Citron,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_dom	-	no_errors	MAP4K3	HGNC	ENSG00000011566				106	0	0	63	5	7.35294
EML4	0	genome.wustl.edu	37	2	42522632	42522632	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	42522632	42522632	C	T	SNP	EML4	ENST00000318522	human	ensembl	74_37	+1	known	missense	c.1465	p.P489S	0.979	superfamily_Quinonprotein_ADH-like_supfam	pfam_HELP,pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like_supfam,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EML4	HGNC	ENSG00000143924				60	0	0	55	5	8.33333
KCNG3	0	genome.wustl.edu	37	2	42671387	42671387	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	42671387	42671387	G	A	SNP	KCNG3	ENST00000306078	human	ensembl	74_37	-1	known	missense	c.998	p.A333V	1.000	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl,prints_K_chnl_volt-dep_Kv	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCNG3	HGNC	ENSG00000171126				57	0	0	35	14	28.5714
HAAO	0	genome.wustl.edu	37	2	43015741	43015741	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	43015741	43015741	C	T	SNP	HAAO	ENST00000294973	human	ensembl	74_37	-1	known	silent	c.87	p.Q29	0.352	pfam_3hydroanth_dOase,superfamily_RmlC_Cupin,pirsf_3hydroanth_dOase_met,tigrfam_3hydroanth_dOase	pfam_3hydroanth_dOase,pfam_Cupin_2,superfamily_RmlC_Cupin,pirsf_3hydroanth_dOase_met,tigrfam_3hydroanth_dOase	-	no_errors	HAAO	HGNC	ENSG00000162882				78	0	0	83	8	8.79121
DYNC2LI1	0	genome.wustl.edu	37	2	44003961	44003961	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	44003961	44003961	A	G	SNP	DYNC2LI1	ENST00000605786	human	ensembl	74_37	+1	known	missense	c.49	p.R17G	0.753	NULL	pfam_Dynein_light_int_chain,superfamily_P-loop_NTPase	-	no_errors	DYNC2LI1	HGNC	ENSG00000138036				90	0	0	66	6	8.33333
ABCG8	0	genome.wustl.edu	37	2	44104732	44104732	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	44104732	44104732	C	T	SNP	ABCG8	ENST00000272286	human	ensembl	74_37	+1	known	missense	c.1789	p.R597W	1.000	pfam_ABC_2_trans	pfam_ABC_2_trans,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,pfscan_ABC_transporter-like	-	no_errors	ABCG8	HGNC	ENSG00000143921				109	0	0	95	8	7.76699
PPM1B	0	genome.wustl.edu	37	2	44436458	44436458	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	44436458	44436458	G	A	SNP	PPM1B	ENST00000282412	human	ensembl	74_37	+1	known	missense	c.956	p.R319Q	1.000	pfam_PP2C_C,superfamily_PP2C_C	pfam_PP2C-like_dom,pfam_PP2C_C,superfamily_PP2C-like_dom,superfamily_PP2C_C,smart_PP2C-like_dom	-	no_errors	PPM1B	HGNC	ENSG00000138032				83	0	0	51	11	17.7419
PPM1B	0	genome.wustl.edu	37	2	44445160	44445160	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	44445160	44445160	G	A	SNP	PPM1B	ENST00000282412	human	ensembl	74_37	+1	known	missense	c.1019	p.R340H	1.000	pfam_PP2C_C,superfamily_PP2C_C	pfam_PP2C-like_dom,pfam_PP2C_C,superfamily_PP2C-like_dom,superfamily_PP2C_C,smart_PP2C-like_dom	-	no_errors	PPM1B	HGNC	ENSG00000138032				180	0	0	120	11	8.39695
SLC3A1	0	genome.wustl.edu	37	2	44539794	44539794	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	44539794	44539794	C	T	SNP	SLC3A1	ENST00000260649	human	ensembl	74_37	+1	known	missense	c.1402	p.L468F	1.000	pfam_Glyco_hydro_13_cat_dom,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom	pfam_Glyco_hydro_13_cat_dom,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom	-	no_errors	SLC3A1	HGNC	ENSG00000138079				106	0	0	67	4	5.6338
CAMKMT	0	genome.wustl.edu	37	2	44599930	44599930	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	44599930	44599930	T	C	SNP	CAMKMT	ENST00000378494	human	ensembl	74_37	+1	known	missense	c.214	p.S72P	1.000	NULL	pfam_Nicotinamide_N-MeTfrase-like	-	no_errors	CAMKMT	HGNC	ENSG00000143919				90	0	0	56	3	5.08475
EPAS1	0	genome.wustl.edu	37	2	46605883	46605883	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	46605883	46605883	G	A	SNP	EPAS1	ENST00000263734	human	ensembl	74_37	+1	known	missense	c.1531	p.A511T	0.919	NULL	pfam_PAS_fold_3,pfam_HIF-1_TAD_C,pfam_HIF_alpha_subunit,pfam_PAS_fold,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,smart_PAC,prints_Nuc_translocat,pfscan_PAS,pfscan_bHLH_dom,tigrfam_PAS	-	no_errors	EPAS1	HGNC	ENSG00000116016				90	0	0	68	6	8.10811
CALM2	0	genome.wustl.edu	37	2	47389439	47389439	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	47389439	47389439	G	A	SNP	CALM2	ENST00000272298	human	ensembl	74_37	-1	known	missense	c.271	p.R91C	1.000	pfam_EF_hand_dom,pfam_EF-hand_Ca_insen,smart_EF_hand_dom,pfscan_EF_hand_dom	pfam_EF_hand_dom,pfam_EF-hand_Ca_insen,smart_EF_hand_dom,pfscan_EF_hand_dom,prints_Recoverin	-	no_errors	CALM2	HGNC	ENSG00000143933				62	0	0	48	6	11.1111
FBXO11	0	genome.wustl.edu	37	2	48045997	48045997	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	48045997	48045997	C	T	SNP	FBXO11	ENST00000403359	human	ensembl	74_37	-1	known	missense	c.1927	p.V643I	1.000	superfamily_F-box_dom,superfamily_Pectin_lyase_fold/virulence,smart_Carb-bd_sugar_hydrolysis-dom,smart_PbH1	pfam_Znf_N-recognin,pfam_F-box_dom,superfamily_Pectin_lyase_fold/virulence,superfamily_F-box_dom,smart_F-box_dom,smart_PbH1,smart_Carb-bd_sugar_hydrolysis-dom,smart_Znf_N-recognin_met,pfscan_F-box_dom,pfscan_Znf_N-recognin,tigrfam_Para_beta_helix_rpt-2	-	no_errors	FBXO11	HGNC	ENSG00000138081				226	0	0	128	15	10.4895
FBXO11	0	genome.wustl.edu	37	2	48049367	48049367	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	48049367	48049367	A	G	SNP	FBXO11	ENST00000434523	human	ensembl	74_37	-1	known	missense	c.59	p.M20T	1.000	NULL	pfam_Znf_N-recognin,superfamily_Pectin_lyase_fold/virulence,smart_Carb-bd_sugar_hydrolysis-dom,smart_PbH1,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin,tigrfam_Para_beta_helix_rpt-2	-	no_errors	FBXO11	HGNC	ENSG00000138081				73	0	0	59	4	6.34921
FBXO11	0	genome.wustl.edu	37	2	48063100	48063100	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	48063100	48063100	T	C	SNP	FBXO11	ENST00000403359	human	ensembl	74_37	-1	known	missense	c.628	p.M210V	1.000	superfamily_F-box_dom	pfam_Znf_N-recognin,pfam_F-box_dom,superfamily_Pectin_lyase_fold/virulence,superfamily_F-box_dom,smart_F-box_dom,smart_PbH1,smart_Carb-bd_sugar_hydrolysis-dom,smart_Znf_N-recognin_met,pfscan_F-box_dom,pfscan_Znf_N-recognin,tigrfam_Para_beta_helix_rpt-2	-	no_errors	FBXO11	HGNC	ENSG00000138081				81	0	0	52	4	7.14286
FBXO11	0	genome.wustl.edu	37	2	48066614	48066614	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	48066614	48066614	T	C	SNP	FBXO11	ENST00000403359	human	ensembl	74_37	-1	known	missense	c.386	p.N129S	1.000	NULL	pfam_Znf_N-recognin,pfam_F-box_dom,superfamily_Pectin_lyase_fold/virulence,superfamily_F-box_dom,smart_F-box_dom,smart_PbH1,smart_Carb-bd_sugar_hydrolysis-dom,smart_Znf_N-recognin_met,pfscan_F-box_dom,pfscan_Znf_N-recognin,tigrfam_Para_beta_helix_rpt-2	-	no_errors	FBXO11	HGNC	ENSG00000138081				80	0	0	89	6	6.31579
PPP1R21	0	genome.wustl.edu	37	2	48681829	48681829	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	48681829	48681829	A	T	SNP	PPP1R21	ENST00000294952	human	ensembl	74_37	+1	known	missense	c.222	p.E74D	1.000	pfam_Unchr_KLRAQ/TTKRSYEDQ_N	pfam_KLRAQ/TTKRSYEDQ_C,pfam_Unchr_KLRAQ/TTKRSYEDQ_N,superfamily_Ferritin-like_SF	-	no_errors	PPP1R21	HGNC	ENSG00000162869				88	0	0	60	7	10.4478
STON1-GTF2A1L	0	genome.wustl.edu	37	2	48808804	48808804	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	48808804	48808804	C	T	SNP	STON1-GTF2A1L	ENST00000309827	human	ensembl	74_37	+1	known	silent	c.1032	p.I344	1.000	pfscan_SHD	pfam_TFIIA_asu/bsu,pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C,superfamily_TFIIA_b-brl,superfamily_TFIIA_a-hlx,pfscan_Clathrin_mu_C,pfscan_SHD	-	no_errors	STON1-GTF2A1L	HGNC	ENSG00000068781				109	0	0	75	26	25.7426
LHCGR	0	genome.wustl.edu	37	2	48925821	48925821	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	48925821	48925821	T	C	SNP	LHCGR	ENST00000294954	human	ensembl	74_37	-1	known	missense	c.799	p.N267D	0.779	prints_TSH_rcpt	pfam_GPCR_Rhodpsn,prints_LSH_rcpt,prints_Gphrmn_rcpt_fam,prints_GPCR_Rhodpsn,prints_TSH_rcpt,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	LHCGR	HGNC	ENSG00000138039				97	0	0	76	4	5
NRXN1	0	genome.wustl.edu	37	2	50850688	50850688	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	50850688	50850688	G	A	SNP	NRXN1	ENST00000402717	human	ensembl	74_37	-1	known	missense	c.898	p.P300S	1.000	superfamily_ConA-like_lec_gl_sf,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN1	HGNC	ENSG00000179915				108	0	0	106	6	5.35714
NRXN1	0	genome.wustl.edu	37	2	51255150	51255150	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	51255150	51255150	G	A	SNP	NRXN1	ENST00000402717	human	ensembl	74_37	-1	known	missense	c.262	p.R88C	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN1	HGNC	ENSG00000179915				20	0	0	33	4	10.8108
GPR75-ASB3	0	genome.wustl.edu	37	2	53956630	53956630	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	53956630	53956630	A	G	SNP	GPR75-ASB3	ENST00000352846	human	ensembl	74_37	-1	known	missense	c.547	p.C183R	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C	-	no_errors	GPR75-ASB3	HGNC	ENSG00000115239				106	0	0	98	8	7.54717
ERLEC1	0	genome.wustl.edu	37	2	54028595	54028595	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	54028595	54028595	G	A	SNP	ERLEC1	ENST00000185150	human	ensembl	74_37	+1	known	missense	c.587	p.G196D	1.000	pfam_PRKCSH,superfamily_Man6P_isomerase_rcpt-bd_dom	pfam_PRKCSH,superfamily_Man6P_isomerase_rcpt-bd_dom	-	no_errors	ERLEC1	HGNC	ENSG00000068912				83	0	0	74	5	6.32911
PSME4	0	genome.wustl.edu	37	2	54117289	54117289	+	Silent	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	54117289	54117289	A	T	SNP	PSME4	ENST00000404125	human	ensembl	74_37	-1	known	silent	c.4248	p.I1416	0.999	superfamily_ARM-type_fold	pfam_DUF3437,superfamily_ARM-type_fold	-	no_errors	PSME4	HGNC	ENSG00000068878				196	0	0	142	12	7.79221
PSME4	0	genome.wustl.edu	37	2	54163234	54163234	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	54163234	54163234	T	A	SNP	PSME4	ENST00000404125	human	ensembl	74_37	-1	known	missense	c.824	p.Y275F	1.000	superfamily_ARM-type_fold	pfam_DUF3437,superfamily_ARM-type_fold	-	no_errors	PSME4	HGNC	ENSG00000068878				181	0	0	135	17	11.1842
TSPYL6	0	genome.wustl.edu	37	2	54482364	54482364	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	54482364	54482364	T	A	SNP	TSPYL6	ENST00000317802	human	ensembl	74_37	-1	known	missense	c.925	p.I309F	0.977	pfam_NAP_family	pfam_NAP_family	-	no_errors	TSPYL6	HGNC	ENSG00000178021				117	0	0	94	5	5.05051
TSPYL6	0	genome.wustl.edu	37	2	54482753	54482753	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	54482753	54482753	G	A	SNP	TSPYL6	ENST00000317802	human	ensembl	74_37	-1	known	missense	c.536	p.A179V	0.000	NULL	pfam_NAP_family	-	no_errors	TSPYL6	HGNC	ENSG00000178021				75	0	0	74	5	6.32911
CCDC88A	0	genome.wustl.edu	37	2	55561385	55561385	+	Nonsense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	55561385	55561385	T	A	SNP	CCDC88A	ENST00000436346	human	ensembl	74_37	-1	known	nonsense	c.2572	p.K858*	1.000	superfamily_Prefoldin	pfam_Hook-related_fam,superfamily_Prefoldin,superfamily_t-SNARE	-	no_errors	CCDC88A	HGNC	ENSG00000115355				127	0	0	77	10	11.4943
CCDC104	0	genome.wustl.edu	37	2	55756032	55756032	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	55756032	55756032	T	C	SNP	CCDC104	ENST00000339012	human	ensembl	74_37	+1	known	silent	c.376	p.L126	0.728	pfam_ARF-like_2-bdp_dom	pfam_ARF-like_2-bdp_dom	-	no_errors	CCDC104	HGNC	ENSG00000163001				77	0	0	43	17	28.3333
PNPT1	0	genome.wustl.edu	37	2	55863427	55863427	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	55863427	55863427	C	G	SNP	PNPT1	ENST00000415374	human	ensembl	74_37	-1	known	missense	c.2297	p.R766T	1.000	pirsf_PNPase	pfam_ExoRNase_PH_dom1,pfam_ExoRNase_PH_dom2,pfam_PNPase_PH_RNA-bd_bac/org-type,pfam_KH_dom_type_1,pfam_Rbsml_prot_S1_RNA-bd_dom,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_ExoRNase_PH_dom2,superfamily_PNPase_PH_RNA-bd_bac/org-type,superfamily_NA-bd_OB-fold,smart_KH_dom,smart_RNA-binding_domain_S1,pirsf_PNPase,pfscan_KH_dom_type_1,pfscan_Rbsml_prot_S1_RNA-bd_dom,tigrfam_PNPase	-	no_errors	PNPT1	HGNC	ENSG00000138035				69	0	0	31	5	13.8889
EFEMP1	0	genome.wustl.edu	37	2	56108868	56108868	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	56108868	56108868	G	A	SNP	EFEMP1	ENST00000355426	human	ensembl	74_37	-1	known	silent	c.519	p.D173	1.000	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	-	no_errors	EFEMP1	HGNC	ENSG00000115380				123	0	0	90	6	6.25
EFEMP1	0	genome.wustl.edu	37	2	56144864	56144864	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	56144864	56144864	G	A	SNP	EFEMP1	ENST00000355426	human	ensembl	74_37	-1	known	silent	c.453	p.S151	0.984	NULL	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	-	no_errors	EFEMP1	HGNC	ENSG00000115380				113	0	0	109	7	6.03448
SOX11	0	genome.wustl.edu	37	2	5833108	5833108	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	5833108	5833108	G	A	SNP	SOX11	ENST00000322002	human	ensembl	74_37	+1	known	silent	c.255	p.K85	1.000	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pirsf_SOX-12/11/4a,pfscan_HMG_box_dom	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pirsf_SOX-12/11/4a,pfscan_HMG_box_dom	-	no_errors	SOX11	HGNC	ENSG00000176887				57	0	0	40	16	28.5714
FANCL	0	genome.wustl.edu	37	2	58386904	58386904	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	58386904	58386904	T	C	SNP	FANCL	ENST00000233741	human	ensembl	74_37	-1	known	missense	c.1124	p.H375R	0.987	NULL	pfam_FancL_WD-rpt_cont_dom	-	no_errors	FANCL	HGNC	ENSG00000115392				118	0	0	56	10	15.1515
FANCL	0	genome.wustl.edu	37	2	58392975	58392975	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	58392975	58392975	G	C	SNP	FANCL	ENST00000233741	human	ensembl	74_37	-1	known	missense	c.575	p.A192G	1.000	pfam_FancL_WD-rpt_cont_dom	pfam_FancL_WD-rpt_cont_dom	-	no_errors	FANCL	HGNC	ENSG00000115392				91	0	0	74	7	8.64198
BCL11A	0	genome.wustl.edu	37	2	60688080	60688080	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	60688080	60688080	T	C	SNP	BCL11A	ENST00000335712	human	ensembl	74_37	-1	known	missense	c.1967	p.Y656C	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	BCL11A	HGNC	ENSG00000119866				66	0	0	72	8	10
REL	0	genome.wustl.edu	37	2	61145339	61145339	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	61145339	61145339	T	C	SNP	REL	ENST00000295025	human	ensembl	74_37	+1	known	silent	c.549	p.T183	0.996	superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set	pfam_RHD,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT,pfscan_RHD,prints_NF_Rel_Dor	-	no_errors	REL	HGNC	ENSG00000162924				59	0	0	44	7	13.7255
USP34	0	genome.wustl.edu	37	2	61475803	61475803	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	61475803	61475803	T	C	SNP	USP34	ENST00000398571	human	ensembl	74_37	-1	known	silent	c.6237	p.K2079	1.000	pfam_Peptidase_C19/C67,superfamily_ARM-type_fold,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,superfamily_ARM-type_fold,pfscan_Peptidase_C19/C67	-	no_errors	USP34	HGNC	ENSG00000115464				120	0	0	72	12	14.2857
USP34	0	genome.wustl.edu	37	2	61575064	61575064	+	Silent	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	61575064	61575064	T	A	SNP	USP34	ENST00000398571	human	ensembl	74_37	-1	known	silent	c.2226	p.R742	0.990	NULL	pfam_Peptidase_C19/C67,superfamily_ARM-type_fold,pfscan_Peptidase_C19/C67	-	no_errors	USP34	HGNC	ENSG00000115464				80	0	0	74	11	12.9412
USP34	0	genome.wustl.edu	37	2	61607407	61607407	+	Nonsense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	61607407	61607407	A	T	SNP	USP34	ENST00000398571	human	ensembl	74_37	-1	known	nonsense	c.911	p.L304*	1.000	NULL	pfam_Peptidase_C19/C67,superfamily_ARM-type_fold,pfscan_Peptidase_C19/C67	-	no_errors	USP34	HGNC	ENSG00000115464				67	0	0	42	3	6.66667
XPO1	0	genome.wustl.edu	37	2	61706036	61706036	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	61706036	61706036	A	G	SNP	XPO1	ENST00000401558	human	ensembl	74_37	-1	known	silent	c.3135	p.A1045	1.000	NULL	pfam_CRM1_C_dom,pfam_Exportin-1/Importin-b-like,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	XPO1	HGNC	ENSG00000082898				98	0	0	80	6	6.97674
XPO1	0	genome.wustl.edu	37	2	61719260	61719260	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	61719260	61719260	G	A	SNP	XPO1	ENST00000401558	human	ensembl	74_37	-1	known	silent	c.1797	p.F599	0.998	superfamily_ARM-type_fold	pfam_CRM1_C_dom,pfam_Exportin-1/Importin-b-like,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	XPO1	HGNC	ENSG00000082898				100	0	0	68	5	6.84932
XPO1	0	genome.wustl.edu	37	2	61719733	61719733	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	61719733	61719733	T	C	SNP	XPO1	ENST00000401558	human	ensembl	74_37	-1	known	missense	c.1535	p.D512G	1.000	superfamily_ARM-type_fold	pfam_CRM1_C_dom,pfam_Exportin-1/Importin-b-like,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	XPO1	HGNC	ENSG00000082898				94	0	0	63	9	12.5
XPO1	0	genome.wustl.edu	37	2	61722717	61722717	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	61722717	61722717	G	A	SNP	XPO1	ENST00000401558	human	ensembl	74_37	-1	known	missense	c.920	p.A307V	1.000	superfamily_ARM-type_fold	pfam_CRM1_C_dom,pfam_Exportin-1/Importin-b-like,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	XPO1	HGNC	ENSG00000082898				96	0	0	44	10	18.5185
OTX1	0	genome.wustl.edu	37	2	63280175	63280175	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	63280175	63280175	T	G	SNP	OTX1	ENST00000282549	human	ensembl	74_37	+1	known	missense	c.50	p.L17R	1.000	superfamily_Homeodomain-like	pfam_Otx_TF_C,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Otx1_TF,prints_Otx_TF	-	no_errors	OTX1	HGNC	ENSG00000115507				120	1	0.826446	103	15	12.7119
WDPCP	0	genome.wustl.edu	37	2	63712103	63712103	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	63712103	63712103	G	A	SNP	WDPCP	ENST00000272321	human	ensembl	74_37	-1	known	missense	c.272	p.T91M	0.993	pfam_DUF3312	pfam_DUF3312,superfamily_WD40_repeat_dom	-	no_errors	WDPCP	HGNC	ENSG00000143951				76	0	0	55	4	6.77966
UGP2	0	genome.wustl.edu	37	2	64114742	64114742	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	64114742	64114742	A	G	SNP	UGP2	ENST00000337130	human	ensembl	74_37	+1	known	silent	c.1278	p.T426	0.994	pfam_UDPGP_trans,pirsf_UDPGP_trans_subgr	pfam_UDPGP_trans,pirsf_UDPGP_trans_subgr	-	no_errors	UGP2	HGNC	ENSG00000169764				201	0	0	144	13	8.28025
AFTPH	0	genome.wustl.edu	37	2	64778626	64778626	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	64778626	64778626	T	G	SNP	AFTPH	ENST00000422803	human	ensembl	74_37	+1	known	missense	c.18	p.I6M	1.000	NULL	NULL	-	no_errors	AFTPH	HGNC	ENSG00000119844				142	0	0	112	8	6.66667
AFTPH	0	genome.wustl.edu	37	2	64796799	64796799	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	64796799	64796799	T	C	SNP	AFTPH	ENST00000422803	human	ensembl	74_37	+1	known	missense	c.2257	p.Y753H	1.000	NULL	NULL	-	no_errors	AFTPH	HGNC	ENSG00000119844				148	0	0	95	9	8.65385
ETAA1	0	genome.wustl.edu	37	2	67630573	67630573	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	67630573	67630573	G	A	SNP	ETAA1	ENST00000272342	human	ensembl	74_37	+1	known	silent	c.759	p.K253	0.001	NULL	NULL	-	no_errors	ETAA1	HGNC	ENSG00000143971				153	0	0	98	9	8.41121
PNO1	0	genome.wustl.edu	37	2	68385539	68385539	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	68385539	68385539	C	G	SNP	PNO1	ENST00000263657	human	ensembl	74_37	+1	known	missense	c.235	p.P79A	0.712	NULL	pfam_KH_dom_type_1,smart_KH_dom	-	no_errors	PNO1	HGNC	ENSG00000115946				124	0	0	80	26	24.5283
ARHGAP25	0	genome.wustl.edu	37	2	69009410	69009410	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	69009410	69009410	A	G	SNP	ARHGAP25	ENST00000409202	human	ensembl	74_37	+1	known	missense	c.307	p.N103D	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom	-	no_errors	ARHGAP25	HGNC	ENSG00000163219				160	1	0.621118	137	14	9.27152
ARHGAP25	0	genome.wustl.edu	37	2	69049650	69049650	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	69049650	69049650	G	A	SNP	ARHGAP25	ENST00000409202	human	ensembl	74_37	+1	known	missense	c.1379	p.S460N	0.960	NULL	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom	-	no_errors	ARHGAP25	HGNC	ENSG00000163219				82	0	0	81	7	7.95455
BMP10	0	genome.wustl.edu	37	2	69093283	69093283	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	69093283	69093283	A	G	SNP	BMP10	ENST00000295379	human	ensembl	74_37	-1	known	missense	c.755	p.L252S	1.000	pfam_TGF-b_N	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C,prints_Inhibin_asu	-	no_errors	BMP10	HGNC	ENSG00000163217				77	0	0	51	3	5.55556
BMP10	0	genome.wustl.edu	37	2	69093671	69093671	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	69093671	69093671	G	C	SNP	BMP10	ENST00000295379	human	ensembl	74_37	-1	known	missense	c.367	p.L123V	0.990	pfam_TGF-b_N	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C,prints_Inhibin_asu	-	no_errors	BMP10	HGNC	ENSG00000163217				65	0	0	42	9	17.6471
ANTXR1	0	genome.wustl.edu	37	2	69300209	69300209	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	69300209	69300209	T	A	SNP	ANTXR1	ENST00000303714	human	ensembl	74_37	+1	known	missense	c.468	p.D156E	0.989	pirsf_Anthrax_toxin_rcpt,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pirsf_Anthrax_toxin_rcpt,pfam_Anthrax_toxin_rcpt_extracel,pfam_Anthrax_toxin_rcpt_C,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	ANTXR1	HGNC	ENSG00000169604				139	0	0	115	14	10.8527
ANTXR1	0	genome.wustl.edu	37	2	69379379	69379379	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	69379379	69379379	C	T	SNP	ANTXR1	ENST00000303714	human	ensembl	74_37	+1	known	missense	c.1030	p.P344S	1.000	pirsf_Anthrax_toxin_rcpt	pirsf_Anthrax_toxin_rcpt,pfam_Anthrax_toxin_rcpt_extracel,pfam_Anthrax_toxin_rcpt_C,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	ANTXR1	HGNC	ENSG00000169604				118	0	0	109	16	12.8
AAK1	0	genome.wustl.edu	37	2	69708009	69708009	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	69708009	69708009	A	G	SNP	AAK1	ENST00000409085	human	ensembl	74_37	-1	known	missense	c.2552	p.V851A	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	AAK1	HGNC	ENSG00000115977				12	0	0	11	3	21.4286
C2orf42	0	genome.wustl.edu	37	2	70408456	70408456	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	70408456	70408456	C	T	SNP	C2orf42	ENST00000264434	human	ensembl	74_37	-1	known	missense	c.662	p.R221H	1.000	NULL	NULL	-	no_errors	C2orf42	HGNC	ENSG00000115998				154	0	0	103	19	15.5738
C2orf42	0	genome.wustl.edu	37	2	70408477	70408477	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	70408477	70408477	C	A	SNP	C2orf42	ENST00000264434	human	ensembl	74_37	-1	known	missense	c.641	p.G214V	0.949	NULL	NULL	-	no_errors	C2orf42	HGNC	ENSG00000115998				163	0	0	101	30	22.9008
ADD2	0	genome.wustl.edu	37	2	70890850	70890850	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	70890850	70890850	C	T	SNP	ADD2	ENST00000264436	human	ensembl	74_37	-1	known	missense	c.1888	p.E630K	0.995	NULL	pfam_Aldolase_II/adducin_N,superfamily_Aldolase_II/adducin_N	-	no_errors	ADD2	HGNC	ENSG00000075340				62	0	0	65	5	7.14286
ADD2	0	genome.wustl.edu	37	2	70903857	70903857	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	70903857	70903857	C	G	SNP	ADD2	ENST00000430656	human	ensembl	74_37	-1	known	missense	c.1712	p.G571A	0.948	NULL	pfam_Aldolase_II/adducin_N,superfamily_Aldolase_II/adducin_N	-	no_errors	ADD2	HGNC	ENSG00000075340				16	0	0	15	4	21.0526
CLEC4F	0	genome.wustl.edu	37	2	71036894	71036894	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	71036894	71036894	T	C	SNP	CLEC4F	ENST00000272367	human	ensembl	74_37	-1	known	silent	c.1635	p.P545	0.847	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,superfamily_C-type_lectin_fold,superfamily_Prefoldin,smart_C-type_lectin,prints_AntifreezeII,pfscan_C-type_lectin	-	no_errors	CLEC4F	HGNC	ENSG00000152672				72	0	0	84	5	5.61798
RNF144A	0	genome.wustl.edu	37	2	7137188	7137188	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	7137188	7137188	C	T	SNP	RNF144A	ENST00000320892	human	ensembl	74_37	+1	known	missense	c.131	p.T44I	1.000	pfscan_Znf_RING	pfam_Znf_C6HC,smart_Znf_C6HC,pfscan_Znf_RING	-	no_errors	RNF144A	HGNC	ENSG00000151692				66	0	0	47	15	24.1935
ZNF638	0	genome.wustl.edu	37	2	71625868	71625868	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	71625868	71625868	A	G	SNP	ZNF638	ENST00000264447	human	ensembl	74_37	+1	known	silent	c.2466	p.V822	1.000	NULL	pfam_RRM_dom,smart_Znf_U1,smart_Znf_C2H2-like,smart_RRM_dom,pfscan_Znf_C2H2_matrin,pfscan_RRM_dom	-	no_errors	ZNF638	HGNC	ENSG00000075292				389	0	0	286	20	6.53595
ZNF638	0	genome.wustl.edu	37	2	71660407	71660407	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	71660407	71660407	T	A	SNP	ZNF638	ENST00000264447	human	ensembl	74_37	+1	known	missense	c.5865	p.N1955K	1.000	smart_Znf_U1,pfscan_Znf_C2H2_matrin	pfam_RRM_dom,smart_Znf_U1,smart_Znf_C2H2-like,smart_RRM_dom,pfscan_Znf_C2H2_matrin,pfscan_RRM_dom	-	no_errors	ZNF638	HGNC	ENSG00000075292				119	0	0	90	11	10.8911
DYSF	0	genome.wustl.edu	37	2	71795459	71795459	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	71795459	71795459	C	T	SNP	DYSF	ENST00000413539	human	ensembl	74_37	+1	known	missense	c.2894	p.P965L	1.000	NULL	pfam_C2_dom,pfam_Ferlin_B-domain,pfam_FerIin-domain,pfam_Ferlin_A-domain,superfamily_C2_dom,superfamily_MFS_dom_general_subst_transpt,smart_C2_dom,smart_Peroxin/Ferlin,pfscan_C2_dom	-	no_errors	DYSF	HGNC	ENSG00000135636				260	0	0	222	26	10.4839
DYSF	0	genome.wustl.edu	37	2	71891479	71891479	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	71891479	71891479	C	T	SNP	DYSF	ENST00000413539	human	ensembl	74_37	+1	known	silent	c.5061	p.D1687	0.500	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_C2_dom,pfam_Ferlin_B-domain,pfam_FerIin-domain,pfam_Ferlin_A-domain,superfamily_C2_dom,superfamily_MFS_dom_general_subst_transpt,smart_C2_dom,smart_Peroxin/Ferlin,pfscan_C2_dom	-	no_errors	DYSF	HGNC	ENSG00000135636				85	0	0	60	13	17.8082
SFXN5	0	genome.wustl.edu	37	2	73198777	73198777	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	73198777	73198777	G	A	SNP	SFXN5	ENST00000272433	human	ensembl	74_37	-1	known	silent	c.663	p.Y221	0.903	pfam_Mtc,tigrfam_Mtc	pfam_Mtc,tigrfam_Mtc	-	no_errors	SFXN5	HGNC	ENSG00000144040				49	0	0	53	9	14.5161
CCT7	0	genome.wustl.edu	37	2	73476280	73476280	+	Silent	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	73476280	73476280	T	G	SNP	CCT7	ENST00000258091	human	ensembl	74_37	+1	known	silent	c.945	p.P315	0.986	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,superfamily_GroEL-like_apical_dom,tigrfam_Chap_CCT_eta	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,superfamily_GroEL-like_apical_dom,prints_Chaperone_TCP-1,prints_Chaprnin_Cpn60,tigrfam_Chap_CCT_eta	-	no_errors	CCT7	HGNC	ENSG00000135624				54	0	0	39	4	9.30233
EGR4	0	genome.wustl.edu	37	2	73519364	73519364	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	73519364	73519364	C	T	SNP	EGR4	ENST00000545030	human	ensembl	74_37	-1	known	missense	c.991	p.A331T	0.001	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	EGR4	HGNC	ENSG00000135625				19	0	0	5	4	44.4444
ALMS1	0	genome.wustl.edu	37	2	73646321	73646321	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	73646321	73646321	G	T	SNP	ALMS1	ENST00000264448	human	ensembl	74_37	+1	known	missense	c.521	p.R174M	0.003	NULL	NULL	-	no_errors	ALMS1	HGNC	ENSG00000116127				117	0	0	56	17	23.2877
ALMS1	0	genome.wustl.edu	37	2	73679769	73679769	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	73679769	73679769	C	A	SNP	ALMS1	ENST00000264448	human	ensembl	74_37	+1	known	missense	c.6112	p.P2038T	0.382	NULL	NULL	-	no_errors	ALMS1	HGNC	ENSG00000116127				158	1	0.628931	121	15	11.0294
ALMS1	0	genome.wustl.edu	37	2	73717072	73717072	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	73717072	73717072	C	A	SNP	ALMS1	ENST00000264448	human	ensembl	74_37	+1	known	missense	c.7983	p.F2661L	1.000	NULL	NULL	-	no_errors	ALMS1	HGNC	ENSG00000116127				143	0	0	100	10	9.09091
ALMS1	0	genome.wustl.edu	37	2	73717193	73717193	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	73717193	73717193	C	T	SNP	ALMS1	ENST00000264448	human	ensembl	74_37	+1	known	missense	c.8104	p.P2702S	0.003	NULL	NULL	-	no_errors	ALMS1	HGNC	ENSG00000116127				176	0	0	136	16	10.5263
ALMS1	0	genome.wustl.edu	37	2	73717520	73717520	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	73717520	73717520	T	G	SNP	ALMS1	ENST00000264448	human	ensembl	74_37	+1	known	missense	c.8431	p.L2811V	0.980	NULL	NULL	-	no_errors	ALMS1	HGNC	ENSG00000116127				76	0	0	60	4	6.25
SLC4A5	0	genome.wustl.edu	37	2	74452027	74452027	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	74452027	74452027	T	C	SNP	SLC4A5	ENST00000357822	human	ensembl	74_37	-1	known	silent	c.3234	p.K1078	1.000	tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Na/HCO3_transpt,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A5	HGNC	ENSG00000188687				135	0	0	109	11	9.16667
SLC4A5	0	genome.wustl.edu	37	2	74482997	74482997	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	74482997	74482997	G	A	SNP	SLC4A5	ENST00000357822	human	ensembl	74_37	-1	known	silent	c.930	p.G310	0.033	pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Na/HCO3_transpt,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A5	HGNC	ENSG00000188687				39	0	0	54	5	8.47458
SLC4A5	0	genome.wustl.edu	37	2	74489328	74489328	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	74489328	74489328	G	A	SNP	SLC4A5	ENST00000357822	human	ensembl	74_37	-1	known	silent	c.747	p.G249	0.990	pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Na/HCO3_transpt,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A5	HGNC	ENSG00000188687				66	0	0	54	4	6.89655
WDR54	0	genome.wustl.edu	37	2	74652568	74652568	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	74652568	74652568	T	C	SNP	WDR54	ENST00000348227	human	ensembl	74_37	+1	known	missense	c.823	p.F275L	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR54	HGNC	ENSG00000005448				103	0	0	108	13	10.7438
HTRA2	0	genome.wustl.edu	37	2	74759794	74759794	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	74759794	74759794	G	A	SNP	HTRA2	ENST00000258080	human	ensembl	74_37	+1	known	silent	c.1164	p.Q388	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ	pfam_Peptidase_S1,pfam_PDZ,superfamily_Trypsin-like_Pept_dom,superfamily_PDZ,smart_PDZ,pfscan_PDZ,prints_Peptidase_S1C	-	no_errors	HTRA2	HGNC	ENSG00000115317				59	0	0	56	9	13.8462
DOK1	0	genome.wustl.edu	37	2	74783646	74783646	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	74783646	74783646	G	A	SNP	DOK1	ENST00000233668	human	ensembl	74_37	+1	known	missense	c.851	p.G284D	0.000	NULL	pfam_Insln_rcpt_S1,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,pfscan_Insln_rcpt_S1	-	no_errors	DOK1	HGNC	ENSG00000115325				61	0	0	53	14	20.8955
M1AP	0	genome.wustl.edu	37	2	74789369	74789369	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	74789369	74789369	T	G	SNP	M1AP	ENST00000290536	human	ensembl	74_37	-1	known	missense	c.1256	p.H419P	0.085	NULL	NULL	-	no_errors	M1AP	HGNC	ENSG00000159374				123	0	0	105	16	13.2231
SEMA4F	0	genome.wustl.edu	37	2	74883728	74883728	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	74883728	74883728	T	C	SNP	SEMA4F	ENST00000357877	human	ensembl	74_37	+1	known	silent	c.213	p.D71	1.000	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,pfscan_Semap_dom	-	no_errors	SEMA4F	HGNC	ENSG00000135622				98	0	0	113	10	8.13008
EVA1A	0	genome.wustl.edu	37	2	75720435	75720435	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	75720435	75720435	C	T	SNP	EVA1A	ENST00000233712	human	ensembl	74_37	-1	known	missense	c.386	p.R129H	1.000	NULL	NULL	-	no_errors	EVA1A	HGNC	ENSG00000115363				78	0	0	70	6	7.89474
REG1A	0	genome.wustl.edu	37	2	79349971	79349971	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	79349971	79349971	G	A	SNP	REG1A	ENST00000233735	human	ensembl	74_37	+1	known	missense	c.326	p.R109H	0.865	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_AntifreezeII	-	no_errors	REG1A	HGNC	ENSG00000115386				116	0	0	113	6	5.04202
CTNNA2	0	genome.wustl.edu	37	2	80136866	80136866	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	80136866	80136866	G	A	SNP	CTNNA2	ENST00000361291	human	ensembl	74_37	+1	known	silent	c.1101	p.A367	0.985	NULL	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin,prints_Vinculin	-	no_errors	CTNNA2	HGNC	ENSG00000066032				76	0	0	60	13	17.8082
LRRTM1	0	genome.wustl.edu	37	2	80529659	80529659	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	80529659	80529659	A	T	SNP	LRRTM1	ENST00000295057	human	ensembl	74_37	-1	known	missense	c.1286	p.V429D	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRTM1	HGNC	ENSG00000162951				56	0	0	53	5	8.62069
LRRTM1	0	genome.wustl.edu	37	2	80529813	80529813	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	80529813	80529813	C	T	SNP	LRRTM1	ENST00000295057	human	ensembl	74_37	-1	known	missense	c.1132	p.V378I	0.771	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRTM1	HGNC	ENSG00000162951				29	0	0	22	4	15.3846
LRRTM1	0	genome.wustl.edu	37	2	80530309	80530309	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	80530309	80530309	G	A	SNP	LRRTM1	ENST00000295057	human	ensembl	74_37	-1	known	silent	c.636	p.T212	0.079	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRTM1	HGNC	ENSG00000162951				113	0	0	77	24	23.7624
LRRTM1	0	genome.wustl.edu	37	2	80530481	80530481	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	80530481	80530481	T	C	SNP	LRRTM1	ENST00000295057	human	ensembl	74_37	-1	known	missense	c.464	p.D155G	1.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRTM1	HGNC	ENSG00000162951				83	0	0	65	10	13.3333
LRRTM1	0	genome.wustl.edu	37	2	80530587	80530587	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	80530587	80530587	G	A	SNP	LRRTM1	ENST00000295057	human	ensembl	74_37	-1	known	silent	c.358	p.L120	1.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRTM1	HGNC	ENSG00000162951				99	0	0	90	14	13.4615
TGOLN2	0	genome.wustl.edu	37	2	85553786	85553786	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	85553786	85553786	C	T	SNP	TGOLN2	ENST00000377386	human	ensembl	74_37	-1	known	missense	c.1069	p.G357R	0.005	NULL	NULL	-	no_errors	TGOLN2	HGNC	ENSG00000152291				116	0	0	91	14	13.3333
GGCX	0	genome.wustl.edu	37	2	85785695	85785695	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	85785695	85785695	C	T	SNP	GGCX	ENST00000233838	human	ensembl	74_37	-1	known	missense	c.407	p.R136Q	1.000	pfam_VKG_COase,smart_HTTM	pfam_VKG_COase,superfamily_RmlC_Cupin,smart_HTTM	-	no_errors	GGCX	HGNC	ENSG00000115486				69	0	0	73	4	5.19481
SFTPB	0	genome.wustl.edu	37	2	85894843	85894843	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	85894843	85894843	G	T	SNP	SFTPB	ENST00000393822	human	ensembl	74_37	-1	known	missense	c.190	p.L64I	0.999	pfam_SapA,smart_SapA,pfscan_SapA	pfam_SapB_2,pfam_SapA,pfam_SapB_1,superfamily_Saposin-like,smart_SapA,smart_SaposinB,pfscan_SapA,pfscan_SaposinB,prints_Saposin	-	no_errors	SFTPB	HGNC	ENSG00000168878				133	0	0	129	10	7.19424
POLR1A	0	genome.wustl.edu	37	2	86280054	86280054	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	86280054	86280054	C	T	SNP	POLR1A	ENST00000263857	human	ensembl	74_37	-1	known	missense	c.2278	p.G760S	1.000	pfam_RNA_pol_Rpb1_3	pfam_RNA_pol_Rpb1_5,pfam_RNA_pol_asu,pfam_RNA_pol_Rpb1_3,pfam_RNA_pol_Rpb1_4,pfam_RNA_pol_Rpb1_1,smart_RNA_pol_N	-	no_errors	POLR1A	HGNC	ENSG00000068654				39	0	0	47	7	12.963
PTCD3	0	genome.wustl.edu	37	2	86352157	86352157	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	86352157	86352157	A	G	SNP	PTCD3	ENST00000254630	human	ensembl	74_37	+1	known	silent	c.756	p.P252	0.998	NULL	NULL	-	no_errors	PTCD3	HGNC	ENSG00000132300				67	0	0	60	5	7.69231
PTCD3	0	genome.wustl.edu	37	2	86352159	86352159	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	86352159	86352159	A	G	SNP	PTCD3	ENST00000254630	human	ensembl	74_37	+1	known	missense	c.758	p.E253G	1.000	NULL	NULL	-	no_errors	PTCD3	HGNC	ENSG00000132300				68	0	0	54	9	14.2857
CD8B	0	genome.wustl.edu	37	2	87042828	87042828	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	87042828	87042828	C	A	SNP	CD8B	ENST00000331469	human	ensembl	74_37	-1	known	missense	c.634	p.G212C	0.016	NULL	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	CD8B	HGNC	ENSG00000172116				267	1	0.373134	255	30	10.5263
SMYD1	0	genome.wustl.edu	37	2	88384012	88384012	+	Splice_Site	SNP	G	G	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	88384012	88384012	G	C	SNP	SMYD1	ENST00000419482	human	ensembl	74_37	+1	known	splice_site	c.314+1	e2+1	1.000	-	-	-	no_errors	SMYD1	HGNC	ENSG00000115593				43	0	0	33	10	23.2558
SMYD1	0	genome.wustl.edu	37	2	88390634	88390634	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	88390634	88390634	A	G	SNP	SMYD1	ENST00000419482	human	ensembl	74_37	+1	known	missense	c.632	p.N211S	1.000	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	pfam_SET_dom,pfam_Znf_MYND,smart_SET_dom,pfscan_SET_dom,pfscan_Znf_MYND	-	no_errors	SMYD1	HGNC	ENSG00000115593				145	0	0	120	13	9.77444
FABP1	0	genome.wustl.edu	37	2	88425860	88425860	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	88425860	88425860	C	T	SNP	FABP1	ENST00000295834	human	ensembl	74_37	-1	known	silent	c.75	p.P25	0.260	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_Fatty_acid-bd	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_Fatty_acid-bd	-	no_errors	FABP1	HGNC	ENSG00000163586				207	0	0	158	38	19.3878
KIDINS220	0	genome.wustl.edu	37	2	8871208	8871208	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	8871208	8871208	G	T	SNP	KIDINS220	ENST00000256707	human	ensembl	74_37	-1	known	missense	c.4958	p.P1653H	1.000	NULL	pfam_KAP_NTPase,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,superfamily_P-loop_NTPase,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	KIDINS220	HGNC	ENSG00000134313				115	1	0.862069	78	8	9.30233
TEX37	0	genome.wustl.edu	37	2	88828944	88828944	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	88828944	88828944	G	T	SNP	TEX37	ENST00000303254	human	ensembl	74_37	+1	known	missense	c.495	p.K165N	0.944	NULL	NULL	-	no_errors	TEX37	HGNC	ENSG00000172073				68	0	0	66	12	15.3846
EIF2AK3	0	genome.wustl.edu	37	2	88874529	88874529	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	88874529	88874529	A	G	SNP	EIF2AK3	ENST00000303236	human	ensembl	74_37	-1	known	silent	c.2472	p.T824	0.000	superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Quinonprotein_ADH-like_supfam,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	EIF2AK3	HGNC	ENSG00000172071				166	0	0	118	11	8.52713
EIF2AK3	0	genome.wustl.edu	37	2	88885468	88885468	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	88885468	88885468	T	A	SNP	EIF2AK3	ENST00000303236	human	ensembl	74_37	-1	known	missense	c.1541	p.D514V	0.999	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Quinonprotein_ADH-like_supfam,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	EIF2AK3	HGNC	ENSG00000172071				141	0	0	120	14	10.4478
KIDINS220	0	genome.wustl.edu	37	2	8919145	8919145	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	8919145	8919145	T	A	SNP	KIDINS220	ENST00000256707	human	ensembl	74_37	-1	known	missense	c.2495	p.D832V	1.000	pfam_KAP_NTPase	pfam_KAP_NTPase,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,superfamily_P-loop_NTPase,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	KIDINS220	HGNC	ENSG00000134313				219	0	0	182	14	7.14286
KIDINS220	0	genome.wustl.edu	37	2	8934031	8934031	+	Silent	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	8934031	8934031	T	A	SNP	KIDINS220	ENST00000256707	human	ensembl	74_37	-1	known	silent	c.1185	p.R395	0.022	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt	pfam_KAP_NTPase,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,superfamily_P-loop_NTPase,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	KIDINS220	HGNC	ENSG00000134313				106	0	0	62	11	15.0685
ASAP2	0	genome.wustl.edu	37	2	9531284	9531284	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	9531284	9531284	C	A	SNP	ASAP2	ENST00000281419	human	ensembl	74_37	+1	known	missense	c.2477	p.A826D	1.000	NULL	pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ankyrin_rpt,pfam_SH3_domain,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,smart_SH3_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	ASAP2	HGNC	ENSG00000151693				148	0	0	139	15	9.74026
ZNF514	0	genome.wustl.edu	37	2	95818505	95818505	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	95818505	95818505	A	G	SNP	ZNF514	ENST00000295208	human	ensembl	74_37	-1	known	missense	c.131	p.V44A	0.064	superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF514	HGNC	ENSG00000144026				231	0	0	208	16	7.14286
ZNF2	0	genome.wustl.edu	37	2	95847534	95847534	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	95847534	95847534	A	G	SNP	ZNF2	ENST00000340539	human	ensembl	74_37	+1	known	missense	c.961	p.K321E	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF2	HGNC	ENSG00000163067				73	0	0	75	12	13.7931
PROM2	0	genome.wustl.edu	37	2	95947020	95947020	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	95947020	95947020	A	G	SNP	PROM2	ENST00000317620	human	ensembl	74_37	+1	known	silent	c.1458	p.A486	0.013	pfam_Prominin	pfam_Prominin	-	no_errors	PROM2	HGNC	ENSG00000155066				88	0	0	88	7	7.36842
ADRA2B	0	genome.wustl.edu	37	2	96781266	96781266	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	96781266	96781266	C	A	SNP	ADRA2B	ENST00000409345	human	ensembl	74_37	-1	known	missense	c.623	p.R208M	0.491	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_ADRA2B_rcpt,prints_GPCR_Rhodpsn,prints_ADR_fam	-	no_errors	ADRA2B	HGNC	ENSG00000222040				32	0	0	33	4	10.8108
TMEM127	0	genome.wustl.edu	37	2	96920595	96920595	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	96920595	96920595	A	G	SNP	TMEM127	ENST00000258439	human	ensembl	74_37	-1	known	missense	c.385	p.Y129H	1.000	NULL	NULL	-	no_errors	TMEM127	HGNC	ENSG00000135956				143	0	0	159	9	5.35714
LMAN2L	0	genome.wustl.edu	37	2	97377612	97377612	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	97377612	97377612	T	A	SNP	LMAN2L	ENST00000377079	human	ensembl	74_37	-1	known	missense	c.691	p.R231W	1.000	pfam_Lectin_leg,superfamily_ConA-like_lec_gl_sf	pfam_Lectin_leg,superfamily_ConA-like_lec_gl_sf	-	no_errors	LMAN2L	HGNC	ENSG00000114988				72	0	0	77	10	11.4943
CNNM3	0	genome.wustl.edu	37	2	97490873	97490873	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	97490873	97490873	T	A	SNP	CNNM3	ENST00000305510	human	ensembl	74_37	+1	known	missense	c.1304	p.V435D	1.000	superfamily_RNA_pol_subH/Rpb5_C	pfam_DUF21,superfamily_RNA_pol_subH/Rpb5_C,superfamily_cNMP-bd-like	-	no_errors	CNNM3	HGNC	ENSG00000168763				38	0	0	42	5	10.6383
CNNM3	0	genome.wustl.edu	37	2	97493602	97493602	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	97493602	97493602	A	G	SNP	CNNM3	ENST00000305510	human	ensembl	74_37	+1	known	missense	c.1654	p.S552G	1.000	superfamily_cNMP-bd-like	pfam_DUF21,superfamily_RNA_pol_subH/Rpb5_C,superfamily_cNMP-bd-like	-	no_errors	CNNM3	HGNC	ENSG00000168763				49	0	0	64	9	12.3288
SEMA4C	0	genome.wustl.edu	37	2	97527061	97527061	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	97527061	97527061	A	T	SNP	SEMA4C	ENST00000305476	human	ensembl	74_37	-1	known	missense	c.1804	p.S602T	0.514	smart_Ig_sub,pfscan_Ig-like_dom	pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_Ig_sub,pfscan_Semap_dom,pfscan_Ig-like_dom	-	no_errors	SEMA4C	HGNC	ENSG00000168758				30	0	0	38	3	7.31707
ANKRD36B	0	genome.wustl.edu	37	2	98175328	98175328	+	RNA	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	98175328	98175328	T	C	SNP	ANKRD36B	ENST00000419390	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	ANKRD36B	HGNC	ENSG00000196912				70	0	0	45	5	10
ACTR1B	0	genome.wustl.edu	37	2	98275349	98275349	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	98275349	98275349	G	T	SNP	ACTR1B	ENST00000289228	human	ensembl	74_37	-1	known	missense	c.433	p.L145I	1.000	pfam_Actin-related,smart_Actin-related,prints_Actin-related	pfam_Actin-related,smart_Actin-related,prints_Actin-related	-	no_errors	ACTR1B	HGNC	ENSG00000115073				110	0	0	99	15	13.1579
ACTR1B	0	genome.wustl.edu	37	2	98275934	98275934	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	98275934	98275934	G	A	SNP	ACTR1B	ENST00000289228	human	ensembl	74_37	-1	known	missense	c.196	p.R66W	1.000	pfam_Actin-related,smart_Actin-related,prints_Actin-related	pfam_Actin-related,smart_Actin-related,prints_Actin-related	-	no_errors	ACTR1B	HGNC	ENSG00000115073				181	1	0.549451	203	17	7.72727
LIPT1	0	genome.wustl.edu	37	2	99778419	99778419	+	Splice_Site	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	99778419	99778419	G	A	SNP	LIPT1	ENST00000340066	human	ensembl	74_37	+1	known	splice_site	c.1-1	e1-1	1.000	-	-	-	no_errors	LIPT1	HGNC	ENSG00000144182				61	0	0	23	6	20.6897
TXNDC9	0	genome.wustl.edu	37	2	99944055	99944055	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	99944055	99944055	T	C	SNP	TXNDC9	ENST00000264255	human	ensembl	74_37	-1	known	missense	c.251	p.Q84R	1.000	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	-	no_errors	TXNDC9	HGNC	ENSG00000115514				99	0	0	63	30	32.2581
ANKEF1	0	genome.wustl.edu	37	20	10019012	10019012	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	10019012	10019012	G	A	SNP	ANKEF1	ENST00000378380	human	ensembl	74_37	+1	known	silent	c.63	p.R21	0.816	superfamily_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EF_hand_dom,prints_Ankyrin_rpt	-	no_errors	ANKEF1	HGNC	ENSG00000132623				70	0	0	49	5	9.25926
MKKS	0	genome.wustl.edu	37	20	10393240	10393240	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	10393240	10393240	T	C	SNP	MKKS	ENST00000347364	human	ensembl	74_37	-1	known	missense	c.923	p.H308R	0.622	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,superfamily_GroEL-like_apical_dom	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,superfamily_GroEL-like_apical_dom	-	no_errors	MKKS	HGNC	ENSG00000125863				140	0	0	95	8	7.76699
MKKS	0	genome.wustl.edu	37	20	10393443	10393443	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	10393443	10393443	C	A	SNP	MKKS	ENST00000347364	human	ensembl	74_37	-1	known	missense	c.720	p.K240N	0.997	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,superfamily_GroEL-like_apical_dom	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,superfamily_GroEL-like_apical_dom	-	no_errors	MKKS	HGNC	ENSG00000125863				96	0	0	82	6	6.81818
SLX4IP	0	genome.wustl.edu	37	20	10541418	10541418	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	10541418	10541418	A	G	SNP	SLX4IP	ENST00000334534	human	ensembl	74_37	+1	known	missense	c.188	p.H63R	0.077	NULL	NULL	-	no_errors	SLX4IP	HGNC	ENSG00000149346				61	0	0	52	7	11.8644
JAG1	0	genome.wustl.edu	37	20	10621534	10621534	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	10621534	10621534	A	G	SNP	JAG1	ENST00000254958	human	ensembl	74_37	-1	known	silent	c.3096	p.T1032	0.006	NULL	pfam_EG-like_dom,pfam_Notch_ligand_N,pfam_DSL,pfam_EGF_extracell,pfam_EGF-like_Ca-bd_dom,smart_DSL,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_VWC_out,smart_VWF_C,pfscan_DSL,pfscan_EG-like_dom	-	no_errors	JAG1	HGNC	ENSG00000101384				79	0	0	71	4	5.33333
JAG1	0	genome.wustl.edu	37	20	10625789	10625789	+	Splice_Site	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	10625789	10625789	A	G	SNP	JAG1	ENST00000254958	human	ensembl	74_37	-1	known	splice_site	c.2227+2	e17+2	1.000	-	-	-	no_errors	JAG1	HGNC	ENSG00000101384				64	0	0	48	3	5.88235
TMEM74B	0	genome.wustl.edu	37	20	1161600	1161600	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	1161600	1161600	G	A	SNP	TMEM74B	ENST00000381894	human	ensembl	74_37	-1	known	silent	c.663	p.G221	1.000	NULL	NULL	-	no_errors	TMEM74B	HGNC	ENSG00000125895				80	0	0	77	6	7.22892
SNPH	0	genome.wustl.edu	37	20	1281356	1281356	+	Splice_Site	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	1281356	1281356	G	A	SNP	SNPH	ENST00000381867	human	ensembl	74_37	+1	known	splice_site	c.440+1	e3+1	1.000	-	-	-	no_errors	SNPH	HGNC	ENSG00000101298				22	0	0	17	3	15
SPTLC3	0	genome.wustl.edu	37	20	13098372	13098372	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	13098372	13098372	G	A	SNP	SPTLC3	ENST00000399002	human	ensembl	74_37	+1	known	silent	c.1152	p.K384	1.000	pfam_Aminotransferase_I/II,pfam_ArAA_b-elim_lyase/Thr_aldolase,superfamily_PyrdxlP-dep_Trfase	pfam_Aminotransferase_I/II,pfam_ArAA_b-elim_lyase/Thr_aldolase,superfamily_PyrdxlP-dep_Trfase	-	no_errors	SPTLC3	HGNC	ENSG00000172296				76	0	0	71	5	6.57895
ISM1	0	genome.wustl.edu	37	20	13260305	13260305	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	13260305	13260305	C	A	SNP	ISM1	ENST00000262487	human	ensembl	74_37	+1	known	missense	c.403	p.P135T	1.000	NULL	pfam_AMOP,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_AMOP,pfscan_AMOP,pfscan_Thrombospondin_1_rpt	-	no_errors	ISM1	HGNC	ENSG00000101230				22	0	0	29	3	9.375
KIF16B	0	genome.wustl.edu	37	20	16496226	16496226	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	16496226	16496226	T	C	SNP	KIF16B	ENST00000408042	human	ensembl	74_37	-1	known	silent	c.315	p.G105	1.000	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	-	no_errors	KIF16B	HGNC	ENSG00000089177				64	0	0	55	3	5.17241
OTOR	0	genome.wustl.edu	37	20	16729574	16729574	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	16729574	16729574	G	A	SNP	OTOR	ENST00000246081	human	ensembl	74_37	+1	known	missense	c.178	p.V60I	0.141	pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain	pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain	-	no_errors	OTOR	HGNC	ENSG00000125879				70	0	0	44	13	22.807
SNX5	0	genome.wustl.edu	37	20	17930823	17930823	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	17930823	17930823	T	C	SNP	SNX5	ENST00000377759	human	ensembl	74_37	-1	known	silent	c.744	p.A248	1.000	pfam_Vps5_C,pirsf_Snx5_Snx6	pfam_Phox,pfam_Vps5_C,superfamily_Phox,pirsf_Snx5_Snx6,pfscan_Phox	-	no_errors	SNX5	HGNC	ENSG00000089006				89	0	0	76	7	8.43373
MGME1	0	genome.wustl.edu	37	20	17970645	17970645	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	17970645	17970645	G	A	SNP	MGME1	ENST00000377710	human	ensembl	74_37	+1	known	missense	c.928	p.D310N	0.999	NULL	superfamily_Restrct_endonuc-II-like	-	no_errors	MGME1	HGNC	ENSG00000125871				140	0	0	110	10	8.33333
OVOL2	0	genome.wustl.edu	37	20	18005394	18005394	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	18005394	18005394	C	T	SNP	OVOL2	ENST00000278780	human	ensembl	74_37	-1	known	silent	c.714	p.P238	0.101	pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	OVOL2	HGNC	ENSG00000125850				39	0	0	40	7	14.8936
CSRP2BP	0	genome.wustl.edu	37	20	18163876	18163876	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	18163876	18163876	T	C	SNP	CSRP2BP	ENST00000435364	human	ensembl	74_37	+1	known	missense	c.1918	p.Y640H	1.000	superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	pfam_GNAT_dom,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	-	no_errors	CSRP2BP	HGNC	ENSG00000149474				181	0	0	140	12	7.89474
POLR3F	0	genome.wustl.edu	37	20	18464126	18464126	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	18464126	18464126	T	G	SNP	POLR3F	ENST00000377603	human	ensembl	74_37	+1	known	missense	c.875	p.V292G	1.000	pfam_RNA_pol_Rpc34,pirsf_RNA_pol_Rpc34	pfam_RNA_pol_Rpc34,pirsf_RNA_pol_Rpc34	-	no_errors	POLR3F	HGNC	ENSG00000132664				43	0	0	33	4	10.8108
SEC23B	0	genome.wustl.edu	37	20	18523773	18523773	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	18523773	18523773	G	T	SNP	SEC23B	ENST00000262544	human	ensembl	74_37	+1	known	missense	c.1622	p.G541V	1.000	pfam_Sec23/24_helical_dom,superfamily_Sec23/24_helical_dom	pfam_Sec23/24_trunk_dom,pfam_Sec23/24_helical_dom,pfam_Sec23_24_beta_S,pfam_Gelsolin_dom,pfam_Znf_Sec23_Sec24,superfamily_Sec23/24_helical_dom,superfamily_Znf_Sec23_Sec24	-	no_errors	SEC23B	HGNC	ENSG00000101310				158	0	0	112	22	16.4179
SIRPA	0	genome.wustl.edu	37	20	1902223	1902223	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	1902223	1902223	T	A	SNP	SIRPA	ENST00000400068	human	ensembl	74_37	+1	known	missense	c.619	p.Y207N	1.000	pfam_Ig_C1-set,pfam_CD80_C2-set,smart_Ig_C1-set,pfscan_Ig-like_dom	pfam_Ig_C1-set,pfam_CD80_C2-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	SIRPA	HGNC	ENSG00000198053				104	0	0	110	10	8.33333
SIRPA	0	genome.wustl.edu	37	20	1918072	1918072	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	1918072	1918072	C	G	SNP	SIRPA	ENST00000400068	human	ensembl	74_37	+1	known	missense	c.1385	p.T462S	0.009	NULL	pfam_Ig_C1-set,pfam_CD80_C2-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	SIRPA	HGNC	ENSG00000198053				74	0	0	86	6	6.52174
SIRPA	0	genome.wustl.edu	37	20	1918165	1918165	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	1918165	1918165	C	T	SNP	SIRPA	ENST00000400068	human	ensembl	74_37	+1	known	missense	c.1478	p.P493L	0.994	NULL	pfam_Ig_C1-set,pfam_CD80_C2-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	SIRPA	HGNC	ENSG00000198053				85	0	0	73	12	14.1176
RIN2	0	genome.wustl.edu	37	20	19981487	19981487	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	19981487	19981487	G	A	SNP	RIN2	ENST00000255006	human	ensembl	74_37	+1	known	silent	c.2742	p.Q914	0.944	pfam_Ras-assoc,smart_Ras-assoc,pfscan_Ras-assoc	pfam_VPS9,pfam_Ras-assoc,smart_VPS9_subgr,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_SH2,pfscan_VPS9	-	no_errors	RIN2	HGNC	ENSG00000132669				63	0	0	43	15	25.8621
CRNKL1	0	genome.wustl.edu	37	20	20020360	20020360	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	20020360	20020360	T	C	SNP	CRNKL1	ENST00000377340	human	ensembl	74_37	-1	known	missense	c.1921	p.T641A	1.000	smart_HAT	pfam_HAT,pfam_Suf,smart_HAT,pfscan_TPR-contain_dom	-	no_errors	CRNKL1	HGNC	ENSG00000101343				165	0	0	113	13	10.3175
CRNKL1	0	genome.wustl.edu	37	20	20029028	20029028	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	20029028	20029028	C	T	SNP	CRNKL1	ENST00000377340	human	ensembl	74_37	-1	known	nonsense	c.897	p.W299*	1.000	pfam_Suf,smart_HAT,pfscan_TPR-contain_dom	pfam_HAT,pfam_Suf,smart_HAT,pfscan_TPR-contain_dom	-	no_errors	CRNKL1	HGNC	ENSG00000101343				120	0	0	71	15	17.4419
C20orf26	0	genome.wustl.edu	37	20	20258096	20258096	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	20258096	20258096	G	T	SNP	C20orf26	ENST00000245957	human	ensembl	74_37	+1	known	missense	c.2790	p.Q930H	0.126	NULL	superfamily_Acyl_CoA_acyltransferase	-	no_errors	C20orf26	HGNC	ENSG00000089101				78	0	0	84	8	8.69565
RALGAPA2	0	genome.wustl.edu	37	20	20392719	20392719	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	20392719	20392719	C	T	SNP	RALGAPA2	ENST00000202677	human	ensembl	74_37	-1	known	missense	c.5569	p.A1857T	1.000	NULL	pfam_Rap_GAP_dom,superfamily_ARM-type_fold,pfscan_Rap_GAP_dom	-	no_errors	RALGAPA2	HGNC	ENSG00000188559				137	0	0	110	11	9.09091
RALGAPA2	0	genome.wustl.edu	37	20	20493484	20493484	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	20493484	20493484	G	A	SNP	RALGAPA2	ENST00000202677	human	ensembl	74_37	-1	known	missense	c.4529	p.S1510F	0.000	NULL	pfam_Rap_GAP_dom,superfamily_ARM-type_fold,pfscan_Rap_GAP_dom	-	no_errors	RALGAPA2	HGNC	ENSG00000188559				122	0	0	83	10	10.7527
XRN2	0	genome.wustl.edu	37	20	21314803	21314803	+	Nonsense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	21314803	21314803	A	T	SNP	XRN2	ENST00000377191	human	ensembl	74_37	+1	known	nonsense	c.1213	p.K405*	1.000	pirsf_5_3_exoribonuclease_2	pfam_Put_53exo,superfamily_Znf_CCHC,pirsf_5_3_exoribonuclease_2	-	no_errors	XRN2	HGNC	ENSG00000088930				61	0	0	45	4	8.16327
XRN2	0	genome.wustl.edu	37	20	21367535	21367535	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	21367535	21367535	G	T	SNP	XRN2	ENST00000377191	human	ensembl	74_37	+1	known	missense	c.2678	p.W893L	1.000	pirsf_5_3_exoribonuclease_2	pfam_Put_53exo,superfamily_Znf_CCHC,pirsf_5_3_exoribonuclease_2	-	no_errors	XRN2	HGNC	ENSG00000088930				146	0	0	132	14	9.58904
NKX2-2	0	genome.wustl.edu	37	20	21494135	21494135	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	21494135	21494135	C	T	SNP	NKX2-2	ENST00000377142	human	ensembl	74_37	-1	known	missense	c.173	p.S58N	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	NKX2-2	HGNC	ENSG00000125820				25	0	0	31	3	8.82353
PAX1	0	genome.wustl.edu	37	20	21687524	21687524	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	21687524	21687524	G	A	SNP	PAX1	ENST00000398485	human	ensembl	74_37	+1	known	silent	c.735	p.T245	0.948	NULL	pfam_Paired_dom,superfamily_Homeodomain-like,smart_Paired_dom,pfscan_Paired_dom,prints_Paired_dom	-	no_errors	PAX1	HGNC	ENSG00000125813				30	0	0	40	13	24.5283
FOXA2	0	genome.wustl.edu	37	20	22563705	22563705	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	22563705	22563705	T	C	SNP	FOXA2	ENST00000419308	human	ensembl	74_37	-1	known	missense	c.175	p.S59G	1.000	pfam_Fork-head_N	pfam_TF_fork_head,pfam_Fork-head_N,pfam_Forkhead_box_C,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXA2	HGNC	ENSG00000125798				99	0	0	89	12	11.8812
TGM3	0	genome.wustl.edu	37	20	2291695	2291695	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	2291695	2291695	G	A	SNP	TGM3	ENST00000381458	human	ensembl	74_37	+1	known	missense	c.460	p.E154K	1.000	NULL	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM3	HGNC	ENSG00000125780				148	0	0	128	12	8.57143
SSTR4	0	genome.wustl.edu	37	20	23016554	23016554	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	23016554	23016554	A	G	SNP	SSTR4	ENST00000255008	human	ensembl	74_37	+1	known	missense	c.434	p.Y145C	0.994	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Somatstn_rcpt_4,prints_GPCR_Rhodpsn,prints_Somatstn_rcpt,prints_Opioid_rcpt,prints_Neuropept_B/W_rcpt,prints_NPY_rcpt,prints_Somatstn_rcpt_1	-	no_errors	SSTR4	HGNC	ENSG00000132671				71	0	0	79	5	5.95238
THBD	0	genome.wustl.edu	37	20	23028480	23028480	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	23028480	23028480	G	A	SNP	THBD	ENST00000377103	human	ensembl	74_37	-1	known	silent	c.1662	p.C554	0.088	pirsf_CD93/CD141,prints_Thrombomodulin	pirsf_CD93/CD141,pfam_Tme5_EGF-like,pfam_EGF-like_Ca-bd_dom,superfamily_C-type_lectin_fold,smart_C-type_lectin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,prints_Thrombomodulin,pfscan_C-type_lectin	-	no_errors	THBD	HGNC	ENSG00000178726				18	0	0	11	3	21.4286
GZF1	0	genome.wustl.edu	37	20	23346229	23346229	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	23346229	23346229	C	T	SNP	GZF1	ENST00000338121	human	ensembl	74_37	+1	known	silent	c.1209	p.G403	0.002	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	GZF1	HGNC	ENSG00000125812				120	0	0	88	6	6.38298
CST8	0	genome.wustl.edu	37	20	23473618	23473618	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	23473618	23473618	T	C	SNP	CST8	ENST00000246012	human	ensembl	74_37	+1	known	silent	c.255	p.L85	0.015	pfam_Prot_inh_cystat,smart_Prot_inh_cystat	pfam_Prot_inh_cystat,smart_Prot_inh_cystat	-	no_errors	CST8	HGNC	ENSG00000125815				267	0	0	188	20	9.61538
TGM6	0	genome.wustl.edu	37	20	2411625	2411625	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	2411625	2411625	C	T	SNP	TGM6	ENST00000202625	human	ensembl	74_37	+1	known	missense	c.1919	p.A640V	0.861	pfam_Transglutaminase_C,superfamily_Transglutaminase_C	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM6	HGNC	ENSG00000166948				85	0	0	82	23	21.9048
CST7	0	genome.wustl.edu	37	20	24930101	24930101	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	24930101	24930101	G	A	SNP	CST7	ENST00000376835	human	ensembl	74_37	+1	known	missense	c.26	p.G9D	0.002	NULL	pfam_Prot_inh_cystat,smart_Prot_inh_cystat	-	no_errors	CST7	HGNC	ENSG00000077984				47	0	0	61	13	17.5676
PYGB	0	genome.wustl.edu	37	20	25259027	25259027	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	25259027	25259027	C	T	SNP	PYGB	ENST00000216962	human	ensembl	74_37	+1	known	missense	c.928	p.R310C	1.000	pfam_Glyco_trans_35,pirsf_Glyco_trans_35,tigrfam_Glycg_phsphrylas	pfam_Glyco_trans_35,pirsf_Glyco_trans_35,tigrfam_Glycg_phsphrylas	-	no_errors	PYGB	HGNC	ENSG00000100994				60	0	0	51	9	15
ABHD12	0	genome.wustl.edu	37	20	25319884	25319884	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	25319884	25319884	T	C	SNP	ABHD12	ENST00000376542	human	ensembl	74_37	-1	known	missense	c.295	p.K99E	1.000	NULL	pfam_AB_hydrolase_1,pfam_AB_hydrolase_3	-	no_errors	ABHD12	HGNC	ENSG00000100997				75	0	0	52	10	16.129
GINS1	0	genome.wustl.edu	37	20	25388408	25388408	+	RNA	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	25388408	25388408	G	A	SNP	GINS1	ENST00000484893	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	GINS1	HGNC	ENSG00000101003				12	0	0	15	2	11.7647
GINS1	0	genome.wustl.edu	37	20	25405924	25405924	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	25405924	25405924	T	C	SNP	GINS1	ENST00000262460	human	ensembl	74_37	+1	known	silent	c.408	p.I136	0.548	NULL	NULL	-	no_errors	GINS1	HGNC	ENSG00000101003				89	0	0	61	9	12.8571
NINL	0	genome.wustl.edu	37	20	25456724	25456724	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	25456724	25456724	A	G	SNP	NINL	ENST00000278886	human	ensembl	74_37	-1	known	missense	c.3203	p.V1068A	0.007	NULL	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	NINL	HGNC	ENSG00000101004				106	0	0	106	13	10.9244
SNORD86	0	genome.wustl.edu	37	20	2636755	2636755	+	RNA	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	2636755	2636755	G	T	SNP	SNORD86	ENST00000391196	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SNORD86	HGNC	ENSG00000212498				33	0	0	37	7	15.9091
PCED1A	0	genome.wustl.edu	37	20	2819100	2819100	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	2819100	2819100	G	A	SNP	PCED1A	ENST00000360652	human	ensembl	74_37	-1	known	missense	c.619	p.R207W	1.000	NULL	NULL	-	no_errors	PCED1A	HGNC	ENSG00000132635				64	0	0	77	5	6.09756
PTPRA	0	genome.wustl.edu	37	20	2968692	2968692	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	2968692	2968692	A	G	SNP	PTPRA	ENST00000425918	human	ensembl	74_37	+1	known	missense	c.575	p.K192R	1.000	pirsf_Tyr_Pase_rcpt_a/e-type	pirsf_Tyr_Pase_rcpt_a/e-type,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRA	HGNC	ENSG00000132670				192	0	0	149	14	8.58896
HM13	0	genome.wustl.edu	37	20	30115329	30115329	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	30115329	30115329	G	A	SNP	HM13	ENST00000398174	human	ensembl	74_37	+1	known	missense	c.226	p.A76T	1.000	pfam_Peptidase_A22B_SPP,smart_Preselin/SPP	pfam_Peptidase_A22B_SPP,smart_Preselin/SPP	-	no_errors	HM13	HGNC	ENSG00000101294				154	0	0	128	15	10.4895
COX4I2	0	genome.wustl.edu	37	20	30231252	30231252	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	30231252	30231252	G	A	SNP	COX4I2	ENST00000376075	human	ensembl	74_37	+1	known	missense	c.293	p.R98H	0.997	pfam_Cyt_c_oxidase_su4_fam,superfamily_Cyt_c_oxidase_su4_fam,prints_Cyt_c_oxidase_su4	pfam_Cyt_c_oxidase_su4_fam,superfamily_Cyt_c_oxidase_su4_fam,prints_Cyt_c_oxidase_su4	-	no_errors	COX4I2	HGNC	ENSG00000131055				80	0	0	61	33	35.1064
COX4I2	0	genome.wustl.edu	37	20	30231301	30231301	+	Silent	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	30231301	30231301	A	T	SNP	COX4I2	ENST00000376075	human	ensembl	74_37	+1	known	silent	c.342	p.G114	0.998	pfam_Cyt_c_oxidase_su4_fam,superfamily_Cyt_c_oxidase_su4_fam	pfam_Cyt_c_oxidase_su4_fam,superfamily_Cyt_c_oxidase_su4_fam,prints_Cyt_c_oxidase_su4	-	no_errors	COX4I2	HGNC	ENSG00000131055				64	0	0	58	4	6.45161
TTLL9	0	genome.wustl.edu	37	20	30486365	30486365	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	30486365	30486365	A	C	SNP	TTLL9	ENST00000375938	human	ensembl	74_37	+1	known	missense	c.203	p.K68T	0.997	NULL	pfam_TTL/TTLL_fam	-	no_errors	TTLL9	HGNC	ENSG00000131044				61	0	0	46	8	14.8148
XKR7	0	genome.wustl.edu	37	20	30556122	30556122	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	30556122	30556122	G	A	SNP	XKR7	ENST00000562532	human	ensembl	74_37	+1	known	silent	c.144	p.P48	0.990	NULL	pfam_Transport_prot_XK	-	no_errors	XKR7	HGNC	ENSG00000260903				11	0	0	12	6	33.3333
XKR7	0	genome.wustl.edu	37	20	30584555	30584555	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	30584555	30584555	A	G	SNP	XKR7	ENST00000562532	human	ensembl	74_37	+1	known	silent	c.1035	p.Q345	0.986	pfam_Transport_prot_XK	pfam_Transport_prot_XK	-	no_errors	XKR7	HGNC	ENSG00000260903				53	0	0	48	8	14.2857
XKR7	0	genome.wustl.edu	37	20	30585102	30585102	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	30585102	30585102	C	T	SNP	XKR7	ENST00000562532	human	ensembl	74_37	+1	known	missense	c.1582	p.P528S	1.000	NULL	pfam_Transport_prot_XK	-	no_errors	XKR7	HGNC	ENSG00000260903				73	0	0	92	8	8
CCM2L	0	genome.wustl.edu	37	20	30610484	30610484	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	30610484	30610484	G	A	SNP	CCM2L	ENST00000300415	human	ensembl	74_37	+1	known	missense	c.955	p.A319T	0.484	NULL	NULL	-	no_errors	CCM2L	HGNC	ENSG00000101331				126	0	0	103	21	16.9355
ASXL1	0	genome.wustl.edu	37	20	31024914	31024914	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	31024914	31024914	C	A	SNP	ASXL1	ENST00000375687	human	ensembl	74_37	+1	known	missense	c.4399	p.L1467I	1.000	NULL	NULL	-	no_errors	ASXL1	HGNC	ENSG00000171456				76	0	0	57	5	8.06452
C20orf112	0	genome.wustl.edu	37	20	31041214	31041214	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	31041214	31041214	T	C	SNP	C20orf112	ENST00000359676	human	ensembl	74_37	-1	known	missense	c.658	p.I220V	1.000	NULL	NULL	-	no_errors	C20orf112	HGNC	ENSG00000197183				61	0	0	67	5	6.94444
BPIFB4	0	genome.wustl.edu	37	20	31676772	31676772	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	31676772	31676772	G	A	SNP	BPIFB4	ENST00000445356	human	ensembl	74_37	+1	known	missense	c.107	p.G36D	0.867	NULL	NULL	-	no_errors	BPIFB4	HGNC	ENSG00000186191				165	0	0	165	15	8.33333
BPIFA1	0	genome.wustl.edu	37	20	31825664	31825664	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	31825664	31825664	A	G	SNP	BPIFA1	ENST00000354297	human	ensembl	74_37	+1	known	silent	c.147	p.G49	0.008	NULL	pfam_Lipid-bd_serum_glycop_N,superfamily_Bactericidal_perm-incr_a/b_dom	-	no_errors	BPIFA1	HGNC	ENSG00000198183				84	0	0	77	7	8.33333
BPIFA1	0	genome.wustl.edu	37	20	31825986	31825986	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	31825986	31825986	A	G	SNP	BPIFA1	ENST00000354297	human	ensembl	74_37	+1	known	missense	c.286	p.T96A	0.023	pfam_Lipid-bd_serum_glycop_N	pfam_Lipid-bd_serum_glycop_N,superfamily_Bactericidal_perm-incr_a/b_dom	-	no_errors	BPIFA1	HGNC	ENSG00000198183				108	0	0	92	9	8.91089
CDK5RAP1	0	genome.wustl.edu	37	20	31982904	31982904	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	31982904	31982904	C	T	SNP	CDK5RAP1	ENST00000357886	human	ensembl	74_37	-1	known	missense	c.323	p.G108D	1.000	pfam_Methylthiotransferase_N,tigrfam_MiaB_methiolase,tigrfam_Methylthiotransferase	pfam_rSAM,pfam_Methylthiotransferase_N,pfam_TRAM_dom,smart_Elp3/MiaB/NifB,pfscan_TRAM_dom,tigrfam_MiaB_methiolase,tigrfam_Methylthiotransferase	-	no_errors	CDK5RAP1	HGNC	ENSG00000101391				103	0	0	85	38	30.8943
C20orf194	0	genome.wustl.edu	37	20	3262381	3262381	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	3262381	3262381	G	A	SNP	C20orf194	ENST00000252032	human	ensembl	74_37	-1	known	silent	c.2518	p.L840	0.906	NULL	NULL	-	no_errors	C20orf194	HGNC	ENSG00000088854				107	0	0	90	5	5.26316
RALY	0	genome.wustl.edu	37	20	32660018	32660018	+	Silent	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	32660018	32660018	C	A	SNP	RALY	ENST00000246194	human	ensembl	74_37	+1	known	silent	c.138	p.G46	1.000	pfam_RRM_dom,smart_RRM_dom,pirsf_hnRNP_C_Raly,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pirsf_hnRNP_C_Raly,pfscan_RRM_dom	-	no_errors	RALY	HGNC	ENSG00000125970				117	0	0	110	9	7.56303
ASIP	0	genome.wustl.edu	37	20	32848253	32848253	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	32848253	32848253	C	T	SNP	ASIP	ENST00000374954	human	ensembl	74_37	+1	known	missense	c.73	p.P25S	0.970	pfam_Agouti,smart_Agouti	pfam_Agouti,superfamily_Agouti_dom,smart_Agouti,pfscan_Agouti_dom	-	no_errors	ASIP	HGNC	ENSG00000101440				128	0	0	130	14	9.72222
ITCH	0	genome.wustl.edu	37	20	33026406	33026406	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	33026406	33026406	C	T	SNP	ITCH	ENST00000262650	human	ensembl	74_37	+1	known	nonsense	c.772	p.R258*	0.993	NULL	pfam_HECT,pfam_WW_dom,pfam_C2_dom,superfamily_HECT,superfamily_C2_dom,superfamily_WW_dom,smart_C2_dom,smart_WW_dom,smart_HECT,pfscan_HECT,pfscan_C2_dom,pfscan_WW_dom	-	no_errors	ITCH	HGNC	ENSG00000078747				114	0	0	84	8	8.69565
ITCH	0	genome.wustl.edu	37	20	33077191	33077191	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	33077191	33077191	G	C	SNP	ITCH	ENST00000262650	human	ensembl	74_37	+1	known	missense	c.2337	p.E779D	1.000	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,pfam_WW_dom,pfam_C2_dom,superfamily_HECT,superfamily_C2_dom,superfamily_WW_dom,smart_C2_dom,smart_WW_dom,smart_HECT,pfscan_HECT,pfscan_C2_dom,pfscan_WW_dom	-	no_errors	ITCH	HGNC	ENSG00000078747				97	0	0	85	11	11.4583
DYNLRB1	0	genome.wustl.edu	37	20	33122545	33122545	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	33122545	33122545	G	A	SNP	DYNLRB1	ENST00000417166	human	ensembl	74_37	+1	known	missense	c.193	p.D65N	1.000	pfam_Dynein_light-rel,smart_Dynein_light-rel	pfam_Dynein_light-rel,smart_Dynein_light-rel	-	no_errors	DYNLRB1	HGNC	ENSG00000125971				65	0	0	56	4	6.66667
PIGU	0	genome.wustl.edu	37	20	33222471	33222471	+	Silent	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	33222471	33222471	G	T	SNP	PIGU	ENST00000217446	human	ensembl	74_37	-1	known	silent	c.477	p.T159	1.000	NULL	pfam_PIG-U	-	no_errors	PIGU	HGNC	ENSG00000101464				55	0	0	49	4	7.54717
NCOA6	0	genome.wustl.edu	37	20	33328893	33328893	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	33328893	33328893	C	G	SNP	NCOA6	ENST00000359003	human	ensembl	74_37	-1	known	missense	c.5167	p.A1723P	0.999	NULL	NULL	-	no_errors	NCOA6	HGNC	ENSG00000198646				136	0	0	143	9	5.92105
ACSS2	0	genome.wustl.edu	37	20	33509131	33509131	+	Splice_Site	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	33509131	33509131	A	G	SNP	ACSS2	ENST00000253382	human	ensembl	74_37	+1	known	splice_site	c.1317-2	e12-2	1.000	-	-	-	no_errors	ACSS2	HGNC	ENSG00000131069				88	0	0	93	10	9.70874
ACSS2	0	genome.wustl.edu	37	20	33514025	33514025	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	33514025	33514025	T	A	SNP	ACSS2	ENST00000253382	human	ensembl	74_37	+1	known	missense	c.1883	p.V628D	1.000	NULL	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSS2	HGNC	ENSG00000131069				72	0	0	68	8	10.5263
MYH7B	0	genome.wustl.edu	37	20	33581008	33581008	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	33581008	33581008	T	C	SNP	MYH7B	ENST00000262873	human	ensembl	74_37	+1	novel	missense	c.2413	p.Y805H	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Myosin_S1_N,superfamily_Prefoldin,superfamily_tRNA-bd_arm,superfamily_t-SNARE,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH7B	HGNC	ENSG00000078814				59	0	0	50	5	9.09091
MYH7B	0	genome.wustl.edu	37	20	33582006	33582006	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	33582006	33582006	G	A	SNP	MYH7B	ENST00000262873	human	ensembl	74_37	+1	novel	nonsense	c.2628	p.W876*	1.000	superfamily_P-loop_NTPase	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Myosin_S1_N,superfamily_Prefoldin,superfamily_tRNA-bd_arm,superfamily_t-SNARE,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH7B	HGNC	ENSG00000078814				166	0	0	138	12	8
EDEM2	0	genome.wustl.edu	37	20	33706412	33706412	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	33706412	33706412	C	T	SNP	EDEM2	ENST00000374492	human	ensembl	74_37	-1	known	missense	c.1225	p.G409R	1.000	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47,prints_Glyco_hydro_47	-	no_errors	EDEM2	HGNC	ENSG00000088298				67	0	0	50	9	15.2542
FAM83C	0	genome.wustl.edu	37	20	33879869	33879869	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	33879869	33879869	T	C	SNP	FAM83C	ENST00000374408	human	ensembl	74_37	-1	known	missense	c.239	p.Y80C	1.000	pfam_DUF1669	pfam_DUF1669	-	no_errors	FAM83C	HGNC	ENSG00000125998				45	0	0	41	5	10.8696
UQCC1	0	genome.wustl.edu	37	20	33981905	33981905	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	33981905	33981905	C	T	SNP	UQCC1	ENST00000374385	human	ensembl	74_37	-1	known	missense	c.119	p.R40H	0.992	NULL	pfam_Ubiq_cyt_c_chap/UPF0174	-	no_errors	UQCC1	HGNC	ENSG00000101019				131	0	0	94	14	12.963
GDF5	0	genome.wustl.edu	37	20	34022040	34022040	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	34022040	34022040	T	C	SNP	GDF5	ENST00000374369	human	ensembl	74_37	-1	known	silent	c.1173	p.R391	0.997	NULL	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C	-	no_errors	GDF5	HGNC	ENSG00000125965				135	1	0.735294	145	12	7.64331
ERGIC3	0	genome.wustl.edu	37	20	34143804	34143804	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	34143804	34143804	A	T	SNP	ERGIC3	ENST00000447986	human	ensembl	74_37	+1	known	missense	c.763	p.I255F	1.000	pfam_Erv_C	pfam_Erv_C	-	no_errors	ERGIC3	HGNC	ENSG00000125991				182	0	0	171	11	6.04396
RBM12	0	genome.wustl.edu	37	20	34241387	34241387	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	34241387	34241387	T	C	SNP	RBM12	ENST00000359646	human	ensembl	74_37	-1	known	missense	c.1858	p.T620A	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM12	HGNC	ENSG00000244462				162	0	0	179	23	11.3861
RBM12	0	genome.wustl.edu	37	20	34242789	34242789	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	34242789	34242789	T	C	SNP	RBM12	ENST00000359646	human	ensembl	74_37	-1	known	silent	c.456	p.T152	0.999	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM12	HGNC	ENSG00000244462				124	0	0	103	14	11.9658
EPB41L1	0	genome.wustl.edu	37	20	34770226	34770226	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	34770226	34770226	T	G	SNP	EPB41L1	ENST00000338074	human	ensembl	74_37	+1	known	missense	c.523	p.F175V	1.000	pfam_FERM_N,smart_Band_41_domain,pirsf_Band_41_protein,pfscan_FERM_domain,prints_Ez/rad/moesin_like	pfam_Band_4.1_C,pfam_FERM_PH-like_C,pfam_FERM_N,pfam_FERM_central,pfam_SAB_dom,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pirsf_Band_41_protein,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	EPB41L1	HGNC	ENSG00000088367				60	0	0	65	5	7.14286
DLGAP4	0	genome.wustl.edu	37	20	35071143	35071143	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	35071143	35071143	C	T	SNP	DLGAP4	ENST00000339266	human	ensembl	74_37	+1	known	missense	c.1370	p.A457V	1.000	NULL	pfam_GKAP	-	no_errors	DLGAP4	HGNC	ENSG00000080845				780	0	0	741	67	8.29208
DLGAP4	0	genome.wustl.edu	37	20	35075206	35075206	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	35075206	35075206	A	T	SNP	DLGAP4	ENST00000339266	human	ensembl	74_37	+1	known	missense	c.1514	p.Y505F	1.000	NULL	pfam_GKAP	-	no_errors	DLGAP4	HGNC	ENSG00000080845				16	0	0	21	4	16
DLGAP4	0	genome.wustl.edu	37	20	35125394	35125394	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	35125394	35125394	A	G	SNP	DLGAP4	ENST00000339266	human	ensembl	74_37	+1	known	silent	c.1935	p.E645	1.000	NULL	pfam_GKAP	-	no_errors	DLGAP4	HGNC	ENSG00000080845				45	0	0	49	6	10.9091
C20orf24	0	genome.wustl.edu	37	20	35240458	35240458	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	35240458	35240458	T	C	SNP	C20orf24	ENST00000342422	human	ensembl	74_37	+1	putative	silent	c.264	p.G88	0.002	NULL	NULL	-	no_errors	C20orf24	HGNC	ENSG00000101084				332	0	0	284	25	8.09061
VSTM2L	0	genome.wustl.edu	37	20	36572479	36572479	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	36572479	36572479	T	C	SNP	VSTM2L	ENST00000373461	human	ensembl	74_37	+1	known	missense	c.439	p.F147L	1.000	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	VSTM2L	HGNC	ENSG00000132821				18	0	0	25	4	13.7931
TTI1	0	genome.wustl.edu	37	20	36641206	36641206	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	36641206	36641206	C	T	SNP	TTI1	ENST00000373447	human	ensembl	74_37	-1	known	missense	c.1013	p.G338E	1.000	superfamily_ARM-type_fold,pirsf_UCP005250	superfamily_ARM-type_fold,pirsf_UCP005250	-	no_errors	TTI1	HGNC	ENSG00000101407				164	0	0	153	9	5.55556
TGM2	0	genome.wustl.edu	37	20	36767989	36767989	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	36767989	36767989	A	G	SNP	TGM2	ENST00000361475	human	ensembl	74_37	-1	known	silent	c.1167	p.D389	0.990	NULL	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM2	HGNC	ENSG00000198959				61	0	0	45	11	19.6429
KIAA1755	0	genome.wustl.edu	37	20	36869061	36869061	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	36869061	36869061	A	T	SNP	KIAA1755	ENST00000279024	human	ensembl	74_37	-1	known	missense	c.1472	p.L491H	0.023	NULL	superfamily_CRAL-TRIO_dom	-	no_errors	KIAA1755	HGNC	ENSG00000149633				86	0	0	67	9	11.8421
TRIB3	0	genome.wustl.edu	37	20	372148	372148	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	372148	372148	T	C	SNP	TRIB3	ENST00000422053	human	ensembl	74_37	+1	known	missense	c.590	p.L197P	0.995	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	-	no_errors	TRIB3	HGNC	ENSG00000101255				29	0	0	36	3	7.69231
SLC32A1	0	genome.wustl.edu	37	20	37356555	37356555	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	37356555	37356555	A	G	SNP	SLC32A1	ENST00000217420	human	ensembl	74_37	+1	known	missense	c.851	p.Y284C	1.000	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC32A1	HGNC	ENSG00000101438				55	0	0	40	4	9.09091
SLC32A1	0	genome.wustl.edu	37	20	37356738	37356738	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	37356738	37356738	T	C	SNP	SLC32A1	ENST00000217420	human	ensembl	74_37	+1	known	missense	c.1034	p.I345T	1.000	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC32A1	HGNC	ENSG00000101438				53	0	0	48	3	5.88235
SLC32A1	0	genome.wustl.edu	37	20	37356973	37356973	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	37356973	37356973	C	T	SNP	SLC32A1	ENST00000217420	human	ensembl	74_37	+1	known	silent	c.1269	p.S423	0.980	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC32A1	HGNC	ENSG00000101438				31	0	0	40	4	9.09091
PANK2	0	genome.wustl.edu	37	20	3888740	3888740	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	3888740	3888740	G	A	SNP	PANK2	ENST00000316562	human	ensembl	74_37	+1	known	missense	c.796	p.V266M	1.000	pfam_Type_II_PanK,tigrfam_Type_II_PanK	pfam_Type_II_PanK,tigrfam_Type_II_PanK	-	no_errors	PANK2	HGNC	ENSG00000125779				120	0	0	104	24	18.75
PANK2	0	genome.wustl.edu	37	20	3899434	3899434	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	3899434	3899434	G	A	SNP	PANK2	ENST00000316562	human	ensembl	74_37	+1	known	silent	c.1653	p.S551	0.752	pfam_Type_II_PanK,tigrfam_Type_II_PanK	pfam_Type_II_PanK,tigrfam_Type_II_PanK	-	no_errors	PANK2	HGNC	ENSG00000125779				371	0	0	215	75	25.8621
TOP1	0	genome.wustl.edu	37	20	39690105	39690105	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	39690105	39690105	C	T	SNP	TOP1	ENST00000361337	human	ensembl	74_37	+1	known	missense	c.130	p.R44W	1.000	NULL	pfam_TopoI_DNA-bd_euk,pfam_TopoI_cat_euk,superfamily_TopoI_DNA-bd_euk,superfamily_DNA_brk_join_enz,smart_TopoI_euk,prints_TopoI	-	no_errors	TOP1	HGNC	ENSG00000198900				28	0	0	16	6	27.2727
TOP1	0	genome.wustl.edu	37	20	39744080	39744080	+	Splice_Site	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	39744080	39744080	G	A	SNP	TOP1	ENST00000361337	human	ensembl	74_37	+1	known	splice_site	c.1707+1	e16+1	1.000	-	-	-	no_errors	TOP1	HGNC	ENSG00000198900				74	0	0	46	10	17.8571
PLCG1	0	genome.wustl.edu	37	20	39792036	39792036	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	39792036	39792036	C	T	SNP	PLCG1	ENST00000244007	human	ensembl	74_37	+1	known	missense	c.808	p.R270C	0.597	pfam_PLipase_C_EF-hand-like,pirsf_PLC-gamma	pfam_PLipase_C_PInositol-sp_X_dom,pfam_SH2,pfam_PLipase_C_Pinositol-sp_Y,pfam_Pleckstrin_homology,pfam_C2_dom,pfam_SH3_domain,pfam_SH3_2,pfam_PLipase_C_EF-hand-like,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_PLipase_C_PInositol-sp_X_dom,smart_SH2,smart_SH3_domain,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,pirsf_PLC-gamma,pfscan_EF_hand_dom,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C,prints_SH2	-	no_errors	PLCG1	HGNC	ENSG00000124181				65	0	0	54	11	16.9231
PLCG1	0	genome.wustl.edu	37	20	39798806	39798806	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	39798806	39798806	C	T	SNP	PLCG1	ENST00000244007	human	ensembl	74_37	+1	known	missense	c.2705	p.A902V	0.806	superfamily_PLC-like_Pdiesterase_TIM-brl,smart_Pleckstrin_homology,pirsf_PLC-gamma,pfscan_Pleckstrin_homology	pfam_PLipase_C_PInositol-sp_X_dom,pfam_SH2,pfam_PLipase_C_Pinositol-sp_Y,pfam_Pleckstrin_homology,pfam_C2_dom,pfam_SH3_domain,pfam_SH3_2,pfam_PLipase_C_EF-hand-like,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_PLipase_C_PInositol-sp_X_dom,smart_SH2,smart_SH3_domain,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,pirsf_PLC-gamma,pfscan_EF_hand_dom,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C,prints_SH2	-	no_errors	PLCG1	HGNC	ENSG00000124181				97	0	0	108	12	10
ZHX3	0	genome.wustl.edu	37	20	39831411	39831411	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	39831411	39831411	T	A	SNP	ZHX3	ENST00000309060	human	ensembl	74_37	-1	known	missense	c.2146	p.I716F	0.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	ZHX3	HGNC	ENSG00000174306				122	0	0	108	12	10
ZHX3	0	genome.wustl.edu	37	20	39832356	39832356	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	39832356	39832356	T	C	SNP	ZHX3	ENST00000309060	human	ensembl	74_37	-1	known	missense	c.1201	p.N401D	0.592	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	ZHX3	HGNC	ENSG00000174306				107	0	0	85	8	8.60215
RBCK1	0	genome.wustl.edu	37	20	400114	400114	+	Splice_Site	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	400114	400114	T	C	SNP	RBCK1	ENST00000356286	human	ensembl	74_37	+1	known	splice_site	c.582+2	e5+2	0.999	-	-	-	no_errors	RBCK1	HGNC	ENSG00000125826				22	0	0	30	2	6.25
CHD6	0	genome.wustl.edu	37	20	40049561	40049561	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	40049561	40049561	T	C	SNP	CHD6	ENST00000373233	human	ensembl	74_37	-1	known	missense	c.5714	p.N1905S	0.000	NULL	pfam_SNF2_N,pfam_Chromo_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_BRK_domain,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD6	HGNC	ENSG00000124177				116	0	0	124	11	8.14815
CHD6	0	genome.wustl.edu	37	20	40085990	40085990	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	40085990	40085990	G	A	SNP	CHD6	ENST00000373233	human	ensembl	74_37	-1	known	missense	c.2743	p.R915C	1.000	superfamily_P-loop_NTPase,pfscan_Helicase_C	pfam_SNF2_N,pfam_Chromo_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_BRK_domain,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD6	HGNC	ENSG00000124177				66	0	0	44	16	26.6667
PTPRT	0	genome.wustl.edu	37	20	40713431	40713431	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	40713431	40713431	A	T	SNP	PTPRT	ENST00000373198	human	ensembl	74_37	-1	known	missense	c.4084	p.Y1362N	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRT	HGNC	ENSG00000196090				34	0	0	27	4	12.9032
PTPRT	0	genome.wustl.edu	37	20	40864873	40864873	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	40864873	40864873	A	G	SNP	PTPRT	ENST00000373198	human	ensembl	74_37	-1	known	missense	c.2395	p.Y799H	1.000	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRT	HGNC	ENSG00000196090				142	0	0	109	8	6.83761
L3MBTL1	0	genome.wustl.edu	37	20	42162001	42162001	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	42162001	42162001	T	C	SNP	L3MBTL1	ENST00000418998	human	ensembl	74_37	+1	known	missense	c.1390	p.Y464H	1.000	pfam_Mbt,smart_Mbt,pfscan_Mbt	pfam_Mbt,pfam_Znf_C2HC,superfamily_SAM/pointed,smart_Mbt,pfscan_Mbt	-	no_errors	L3MBTL1	HGNC	ENSG00000185513				46	0	0	54	4	6.89655
IFT52	0	genome.wustl.edu	37	20	42232531	42232531	+	Splice_Site	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	42232531	42232531	T	C	SNP	IFT52	ENST00000373030	human	ensembl	74_37	+1	known	splice_site	c.337+2	e3+2	1.000	-	-	-	no_errors	IFT52	HGNC	ENSG00000101052				64	0	0	36	3	7.69231
IFT52	0	genome.wustl.edu	37	20	42265849	42265849	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	42265849	42265849	C	T	SNP	IFT52	ENST00000373030	human	ensembl	74_37	+1	known	missense	c.1076	p.T359M	0.953	NULL	pfam_ABC_transp_unknown	-	no_errors	IFT52	HGNC	ENSG00000101052				167	0	0	125	9	6.71642
JPH2	0	genome.wustl.edu	37	20	42744457	42744457	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	42744457	42744457	C	T	SNP	JPH2	ENST00000372980	human	ensembl	74_37	-1	known	missense	c.1858	p.A620T	0.220	pirsf_Junctophilin	pfam_MORN,smart_MORN,pirsf_Junctophilin	-	no_errors	JPH2	HGNC	ENSG00000149596				33	0	0	16	5	23.8095
YWHAB	0	genome.wustl.edu	37	20	43530375	43530375	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	43530375	43530375	T	C	SNP	YWHAB	ENST00000353703	human	ensembl	74_37	+1	known	silent	c.201	p.I67	0.960	pfam_14-3-3_domain,superfamily_14-3-3_domain,smart_14-3-3_domain,pirsf_14-3-3	pfam_14-3-3_domain,superfamily_14-3-3_domain,smart_14-3-3_domain,pirsf_14-3-3,prints_14-3-3	-	no_errors	YWHAB	HGNC	ENSG00000166913				76	0	0	72	5	6.49351
TOMM34	0	genome.wustl.edu	37	20	43583713	43583713	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	43583713	43583713	T	C	SNP	TOMM34	ENST00000372813	human	ensembl	74_37	-1	known	missense	c.376	p.N126D	1.000	NULL	pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TOMM34	HGNC	ENSG00000025772				99	0	0	97	12	11.0092
WFDC5	0	genome.wustl.edu	37	20	43739138	43739138	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	43739138	43739138	G	A	SNP	WFDC5	ENST00000307971	human	ensembl	74_37	-1	known	silent	c.270	p.S90	0.993	pfam_WAP-type_4-diS_core,superfamily_WAP-type_4-diS_core,smart_WAP-type_4-diS_core	pfam_WAP-type_4-diS_core,superfamily_WAP-type_4-diS_core,smart_WAP-type_4-diS_core,prints_WAP-type_4-diS_core	-	no_errors	WFDC5	HGNC	ENSG00000175121				55	0	0	50	5	9.09091
SEMG2	0	genome.wustl.edu	37	20	43850767	43850767	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	43850767	43850767	G	A	SNP	SEMG2	ENST00000372769	human	ensembl	74_37	+1	known	missense	c.494	p.R165K	0.000	pfam_Semenogelin	pfam_Semenogelin	-	no_errors	SEMG2	HGNC	ENSG00000124157				68	0	0	52	3	5.45455
EPPIN-WFDC6	0	genome.wustl.edu	37	20	44166681	44166681	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	44166681	44166681	A	G	SNP	EPPIN-WFDC6	ENST00000504988	human	ensembl	74_37	-1	known	silent	c.444	p.C148	0.000	pfam_WAP-type_4-diS_core,superfamily_WAP-type_4-diS_core	pfam_Prot_inh_Kunz-m,pfam_WAP-type_4-diS_core,superfamily_Prot_inh_Kunz-m,superfamily_WAP-type_4-diS_core,smart_WAP-type_4-diS_core,smart_Prot_inh_Kunz-m,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	EPPIN-WFDC6	HGNC	ENSG00000249139				175	0	0	138	17	10.9677
SNX21	0	genome.wustl.edu	37	20	44469372	44469372	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	44469372	44469372	A	C	SNP	SNX21	ENST00000491381	human	ensembl	74_37	+1	known	missense	c.542	p.N181T	0.769	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	pfam_Phox,pfam_TPR_1,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	SNX21	HGNC	ENSG00000124104				110	0	0	110	14	11.2903
ZSWIM3	0	genome.wustl.edu	37	20	44505771	44505771	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	44505771	44505771	T	C	SNP	ZSWIM3	ENST00000255152	human	ensembl	74_37	+1	known	missense	c.574	p.F192L	0.621	NULL	pfam_Znf_SWIM,pfam_MULE_transposase_dom,pfam_Transposase,smart_Znf_PMZ,pfscan_Znf_SWIM	-	no_errors	ZSWIM3	HGNC	ENSG00000132801				104	0	0	92	10	9.80392
ZSWIM3	0	genome.wustl.edu	37	20	44506225	44506225	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	44506225	44506225	C	A	SNP	ZSWIM3	ENST00000255152	human	ensembl	74_37	+1	known	missense	c.1028	p.S343Y	0.993	NULL	pfam_Znf_SWIM,pfam_MULE_transposase_dom,pfam_Transposase,smart_Znf_PMZ,pfscan_Znf_SWIM	-	no_errors	ZSWIM3	HGNC	ENSG00000132801				104	0	0	90	7	7.21649
SPATA25	0	genome.wustl.edu	37	20	44515632	44515632	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	44515632	44515632	C	T	SNP	SPATA25	ENST00000372519	human	ensembl	74_37	-1	known	missense	c.208	p.A70T	0.960	NULL	NULL	-	no_errors	SPATA25	HGNC	ENSG00000149634				143	0	0	152	15	8.98204
PLTP	0	genome.wustl.edu	37	20	44538650	44538650	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	44538650	44538650	T	C	SNP	PLTP	ENST00000542937	human	ensembl	74_37	-1	known	missense	c.320	p.E107G	0.995	pfam_Lipid-bd_serum_glycop_N,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_N	pfam_Lipid-bd_serum_glycop_C,pfam_Lipid-bd_serum_glycop_N,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_N,smart_Lipid-bd_serum_glycop_C	-	no_errors	PLTP	HGNC	ENSG00000100979				71	0	0	53	4	7.01754
ZNF335	0	genome.wustl.edu	37	20	44596981	44596981	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	44596981	44596981	C	T	SNP	ZNF335	ENST00000322927	human	ensembl	74_37	-1	known	missense	c.463	p.A155T	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF335	HGNC	ENSG00000198026				94	0	0	100	12	10.7143
MMP9	0	genome.wustl.edu	37	20	44640886	44640886	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	44640886	44640886	C	T	SNP	MMP9	ENST00000372330	human	ensembl	74_37	+1	known	missense	c.1108	p.R370C	0.970	pfam_Pept_M10_metallopeptidase,pfam_FN_type2_col-bd,superfamily_Kringle-like,smart_Peptidase_Metallo,smart_FN_type2_col-bd,pfscan_FN_type2_col-bd	pfam_Pept_M10_metallopeptidase,pfam_FN_type2_col-bd,pfam_Hemopexin-like_repeat,pfam_PT,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Kringle-like,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_FN_type2_col-bd,smart_Hemopexin-like_repeat,pfscan_FN_type2_col-bd,prints_Pept_M10A	-	no_errors	MMP9	HGNC	ENSG00000100985				122	0	0	125	15	10.7143
NCOA5	0	genome.wustl.edu	37	20	44691317	44691317	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	44691317	44691317	C	T	SNP	NCOA5	ENST00000290231	human	ensembl	74_37	-1	known	silent	c.1362	p.S454	0.936	NULL	superfamily_Anticodon-bd	-	no_errors	NCOA5	HGNC	ENSG00000124160				171	0	0	149	15	9.14634
CDH22	0	genome.wustl.edu	37	20	44869870	44869870	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	44869870	44869870	G	A	SNP	CDH22	ENST00000372262	human	ensembl	74_37	-1	known	silent	c.282	p.D94	0.930	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,superfamily_MFS_dom_general_subst_transpt,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH22	HGNC	ENSG00000149654				32	0	0	17	4	19.0476
SLC35C2	0	genome.wustl.edu	37	20	44983738	44983738	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	44983738	44983738	T	C	SNP	SLC35C2	ENST00000543605	human	ensembl	74_37	-1	known	missense	c.638	p.Q213R	1.000	pfam_Tpt_PEP_trans_dom,pfam_UAA	pfam_Tpt_PEP_trans_dom,pfam_UAA	-	no_errors	SLC35C2	HGNC	ENSG00000080189				94	0	0	80	18	18.3673
ELMO2	0	genome.wustl.edu	37	20	44996115	44996115	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	44996115	44996115	G	A	SNP	ELMO2	ENST00000439931	human	ensembl	74_37	-1	known	silent	c.2083	p.L695	1.000	NULL	pfam_DUF3361,pfam_Engulfment_cell_motility_ELMO,superfamily_ARM-type_fold	-	no_errors	ELMO2	HGNC	ENSG00000062598				58	0	0	42	7	14.2857
ZNF334	0	genome.wustl.edu	37	20	45130828	45130828	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	45130828	45130828	T	C	SNP	ZNF334	ENST00000347606	human	ensembl	74_37	-1	known	missense	c.1150	p.K384E	0.994	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF334	HGNC	ENSG00000198185				175	0	0	126	10	7.35294
SLC13A3	0	genome.wustl.edu	37	20	45239247	45239247	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	45239247	45239247	G	T	SNP	SLC13A3	ENST00000279027	human	ensembl	74_37	-1	known	missense	c.379	p.L127I	1.000	pfam_Na/sul_symport,pfam_Cit_transptr-like_dom	pfam_Na/sul_symport,pfam_Cit_transptr-like_dom	-	no_errors	SLC13A3	HGNC	ENSG00000158296				69	0	0	75	4	5.06329
SLC2A10	0	genome.wustl.edu	37	20	45354435	45354435	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	45354435	45354435	G	A	SNP	SLC2A10	ENST00000359271	human	ensembl	74_37	+1	known	missense	c.760	p.A254T	1.000	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Sugar/inositol_transpt	-	no_errors	SLC2A10	HGNC	ENSG00000197496				122	0	0	114	21	15.5556
NCOA3	0	genome.wustl.edu	37	20	46279854	46279854	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	46279854	46279854	G	A	SNP	NCOA3	ENST00000371998	human	ensembl	74_37	+1	known	silent	c.3780	p.Q1260	0.884	pirsf_Nuclear_rcpt_coactivator	pfam_Nuc_rcpt_coact_Ncoa-typ,pfam_SRC-1,pfam_PAS_fold,superfamily_PAS,superfamily_Nuc_rcpt_coact,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,pirsf_Nuclear_rcpt_coactivator,pfscan_PAS,pfscan_bHLH_dom	-	no_errors	NCOA3	HGNC	ENSG00000124151				64	0	0	44	11	20
NCOA3	0	genome.wustl.edu	37	20	46281156	46281156	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	46281156	46281156	G	A	SNP	NCOA3	ENST00000371998	human	ensembl	74_37	+1	known	missense	c.3953	p.G1318E	1.000	pirsf_Nuclear_rcpt_coactivator	pfam_Nuc_rcpt_coact_Ncoa-typ,pfam_SRC-1,pfam_PAS_fold,superfamily_PAS,superfamily_Nuc_rcpt_coact,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,pirsf_Nuclear_rcpt_coactivator,pfscan_PAS,pfscan_bHLH_dom	-	no_errors	NCOA3	HGNC	ENSG00000124151				88	0	0	62	9	12.6761
PRNP	0	genome.wustl.edu	37	20	4680403	4680403	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	4680403	4680403	C	T	SNP	PRNP	ENST00000379440	human	ensembl	74_37	+1	known	silent	c.537	p.C179	0.997	pfam_Prion/Doppel_prot_b-ribbon_dom,superfamily_Prion/Doppel_prot_b-ribbon_dom,smart_Prion	pfam_Prion/Doppel_prot_b-ribbon_dom,pfam_Prion_N_dom,superfamily_Prion/Doppel_prot_b-ribbon_dom,smart_Prion,prints_Prion	-	no_errors	PRNP	HGNC	ENSG00000171867				69	0	0	60	8	11.7647
PRNP	0	genome.wustl.edu	37	20	4680596	4680596	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	4680596	4680596	A	T	SNP	PRNP	ENST00000379440	human	ensembl	74_37	+1	known	missense	c.730	p.I244F	1.000	pfam_Prion/Doppel_prot_b-ribbon_dom,prints_Prion	pfam_Prion/Doppel_prot_b-ribbon_dom,pfam_Prion_N_dom,superfamily_Prion/Doppel_prot_b-ribbon_dom,smart_Prion,prints_Prion	-	no_errors	PRNP	HGNC	ENSG00000171867				16	0	0	13	3	18.75
PRND	0	genome.wustl.edu	37	20	4705292	4705292	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	4705292	4705292	G	T	SNP	PRND	ENST00000305817	human	ensembl	74_37	+1	known	missense	c.95	p.R32I	0.960	NULL	pfam_Prion/Doppel_prot_b-ribbon_dom,pfam_Doppel,superfamily_Prion/Doppel_prot_b-ribbon_dom	-	no_errors	PRND	HGNC	ENSG00000171864				65	0	0	64	6	8.57143
PREX1	0	genome.wustl.edu	37	20	47266665	47266665	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	47266665	47266665	T	C	SNP	PREX1	ENST00000371941	human	ensembl	74_37	-1	known	missense	c.2897	p.D966G	1.000	NULL	pfam_DH-domain,pfam_DEP_dom,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX1	HGNC	ENSG00000124126				151	0	0	146	9	5.80645
CSNK2A1	0	genome.wustl.edu	37	20	472932	472932	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	472932	472932	T	C	SNP	CSNK2A1	ENST00000217244	human	ensembl	74_37	-1	known	missense	c.587	p.Y196C	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Aminoglycoside_PTrfase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CSNK2A1	HGNC	ENSG00000101266				88	0	0	52	4	7.14286
ARFGEF2	0	genome.wustl.edu	37	20	47585715	47585715	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	47585715	47585715	C	T	SNP	ARFGEF2	ENST00000371917	human	ensembl	74_37	+1	known	missense	c.1091	p.A364V	0.819	superfamily_ARM-type_fold	pfam_Sec7_dom,pfam_DUF1981_Sec7_assoc,superfamily_Sec7_dom,superfamily_ARM-type_fold,smart_Sec7_dom,pfscan_Sec7_dom	-	no_errors	ARFGEF2	HGNC	ENSG00000124198				64	0	0	44	9	16.9811
ARFGEF2	0	genome.wustl.edu	37	20	47601974	47601974	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	47601974	47601974	C	T	SNP	ARFGEF2	ENST00000371917	human	ensembl	74_37	+1	known	silent	c.2100	p.S700	0.903	pfam_Sec7_dom,superfamily_Sec7_dom,superfamily_ARM-type_fold,smart_Sec7_dom,pfscan_Sec7_dom	pfam_Sec7_dom,pfam_DUF1981_Sec7_assoc,superfamily_Sec7_dom,superfamily_ARM-type_fold,smart_Sec7_dom,pfscan_Sec7_dom	-	no_errors	ARFGEF2	HGNC	ENSG00000124198				121	0	0	86	12	12.2449
ARFGEF2	0	genome.wustl.edu	37	20	47621755	47621755	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	47621755	47621755	A	G	SNP	ARFGEF2	ENST00000371917	human	ensembl	74_37	+1	known	missense	c.3581	p.N1194S	1.000	pfam_DUF1981_Sec7_assoc,superfamily_ARM-type_fold	pfam_Sec7_dom,pfam_DUF1981_Sec7_assoc,superfamily_Sec7_dom,superfamily_ARM-type_fold,smart_Sec7_dom,pfscan_Sec7_dom	-	no_errors	ARFGEF2	HGNC	ENSG00000124198				100	0	0	84	5	5.61798
ARFGEF2	0	genome.wustl.edu	37	20	47630429	47630429	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	47630429	47630429	T	C	SNP	ARFGEF2	ENST00000371917	human	ensembl	74_37	+1	known	missense	c.4111	p.W1371R	1.000	superfamily_ARM-type_fold	pfam_Sec7_dom,pfam_DUF1981_Sec7_assoc,superfamily_Sec7_dom,superfamily_ARM-type_fold,smart_Sec7_dom,pfscan_Sec7_dom	-	no_errors	ARFGEF2	HGNC	ENSG00000124198				110	0	0	100	9	8.25688
DDX27	0	genome.wustl.edu	37	20	47852753	47852753	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	47852753	47852753	T	C	SNP	DDX27	ENST00000371764	human	ensembl	74_37	+1	known	silent	c.1587	p.I529	0.976	pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_C,pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX27	HGNC	ENSG00000124228				128	0	0	120	7	5.51181
ZNFX1	0	genome.wustl.edu	37	20	47863988	47863988	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	47863988	47863988	C	T	SNP	ZNFX1	ENST00000371752	human	ensembl	74_37	-1	known	missense	c.5573	p.G1858D	0.025	NULL	superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_Znf_NFX1	-	no_errors	ZNFX1	HGNC	ENSG00000124201				77	0	0	73	7	8.75
ZNFX1	0	genome.wustl.edu	37	20	47864700	47864700	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	47864700	47864700	T	C	SNP	ZNFX1	ENST00000371752	human	ensembl	74_37	-1	known	missense	c.4861	p.I1621V	0.993	NULL	superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_Znf_NFX1	-	no_errors	ZNFX1	HGNC	ENSG00000124201				72	0	0	73	4	5.19481
ZNFX1	0	genome.wustl.edu	37	20	47874037	47874037	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	47874037	47874037	C	T	SNP	ZNFX1	ENST00000371752	human	ensembl	74_37	-1	known	missense	c.2581	p.A861T	1.000	superfamily_P-loop_NTPase	superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_Znf_NFX1	-	no_errors	ZNFX1	HGNC	ENSG00000124201				129	0	0	77	7	8.33333
KCNB1	0	genome.wustl.edu	37	20	47990019	47990019	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	47990019	47990019	T	A	SNP	KCNB1	ENST00000371741	human	ensembl	74_37	-1	known	missense	c.2078	p.D693V	0.994	pfam_K_chnl_volt-dep_Kv2	pfam_K_chnl_volt-dep_Kv2,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv2.1,prints_K_chnl_volt-dep_Kv2,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv8	-	no_errors	KCNB1	HGNC	ENSG00000158445				38	0	0	50	7	12.2807
SLC9A8	0	genome.wustl.edu	37	20	48431651	48431651	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	48431651	48431651	G	A	SNP	SLC9A8	ENST00000417961	human	ensembl	74_37	+1	known	missense	c.133	p.V45M	0.999	NULL	pfam_Cation/H_exchanger,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A8	HGNC	ENSG00000197818				96	0	0	98	7	6.66667
FAM65C	0	genome.wustl.edu	37	20	49218812	49218812	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	49218812	49218812	C	A	SNP	FAM65C	ENST00000535356	human	ensembl	74_37	-1	known	missense	c.1456	p.G486C	0.889	NULL	superfamily_ARM-type_fold,superfamily_Chemokine_IL8-like_dom	-	no_errors	FAM65C	HGNC	ENSG00000042062				27	0	0	23	9	28.125
FAM65C	0	genome.wustl.edu	37	20	49224977	49224977	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	49224977	49224977	A	G	SNP	FAM65C	ENST00000535356	human	ensembl	74_37	-1	known	missense	c.905	p.V302A	1.000	NULL	superfamily_ARM-type_fold,superfamily_Chemokine_IL8-like_dom	-	no_errors	FAM65C	HGNC	ENSG00000042062				69	0	0	81	5	5.81395
FAM65C	0	genome.wustl.edu	37	20	49225053	49225053	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	49225053	49225053	G	T	SNP	FAM65C	ENST00000535356	human	ensembl	74_37	-1	known	missense	c.829	p.L277M	1.000	NULL	superfamily_ARM-type_fold,superfamily_Chemokine_IL8-like_dom	-	no_errors	FAM65C	HGNC	ENSG00000042062				107	0	0	115	10	8
DPM1	0	genome.wustl.edu	37	20	49575045	49575045	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	49575045	49575045	C	G	SNP	DPM1	ENST00000371582	human	ensembl	74_37	-1	known	missense	c.16	p.V6L	0.001	NULL	pfam_Glyco_trans_2	-	no_errors	DPM1	HGNC	ENSG00000000419				57	0	0	51	8	13.5593
NFATC2	0	genome.wustl.edu	37	20	50139780	50139780	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	50139780	50139780	C	T	SNP	NFATC2	ENST00000396009	human	ensembl	74_37	-1	known	missense	c.1000	p.A334T	0.009	NULL	pfam_RHD,pfam_IPT,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT,pfscan_RHD,prints_NFAT	-	no_errors	NFATC2	HGNC	ENSG00000101096				74	0	0	58	7	10.7692
ATP9A	0	genome.wustl.edu	37	20	50235532	50235532	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	50235532	50235532	C	T	SNP	ATP9A	ENST00000338821	human	ensembl	74_37	-1	known	silent	c.2166	p.K722	0.999	pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP9A	HGNC	ENSG00000054793				56	0	0	53	6	10.1695
ATP9A	0	genome.wustl.edu	37	20	50273593	50273593	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	50273593	50273593	C	T	SNP	ATP9A	ENST00000338821	human	ensembl	74_37	-1	known	missense	c.1390	p.A464T	1.000	pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP9A	HGNC	ENSG00000054793				59	0	0	43	4	8.51064
SALL4	0	genome.wustl.edu	37	20	50406794	50406794	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	50406794	50406794	A	G	SNP	SALL4	ENST00000217086	human	ensembl	74_37	-1	known	missense	c.2228	p.L743P	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SALL4	HGNC	ENSG00000101115				36	0	0	43	4	8.51064
ZFP64	0	genome.wustl.edu	37	20	50715059	50715059	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	50715059	50715059	C	A	SNP	ZFP64	ENST00000361387	human	ensembl	74_37	-1	known	missense	c.831	p.K277N	0.095	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFP64	HGNC	ENSG00000020256				84	0	0	74	6	7.5
ZNF217	0	genome.wustl.edu	37	20	52198090	52198090	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	52198090	52198090	C	T	SNP	ZNF217	ENST00000302342	human	ensembl	74_37	-1	known	missense	c.1276	p.A426T	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF217	HGNC	ENSG00000171940				57	0	0	70	15	17.6471
BCAS1	0	genome.wustl.edu	37	20	52573988	52573988	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	52573988	52573988	T	C	SNP	BCAS1	ENST00000395961	human	ensembl	74_37	-1	known	missense	c.1399	p.K467E	0.998	NULL	NULL	-	no_errors	BCAS1	HGNC	ENSG00000064787				109	0	0	91	11	10.7843
CYP24A1	0	genome.wustl.edu	37	20	52779357	52779357	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	52779357	52779357	G	A	SNP	CYP24A1	ENST00000216862	human	ensembl	74_37	-1	known	missense	c.889	p.P297S	0.118	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_CYP24A_mit	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_CYP24A_mit,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450	-	no_errors	CYP24A1	HGNC	ENSG00000019186				80	0	0	66	5	7.04225
AURKA	0	genome.wustl.edu	37	20	54956577	54956577	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	54956577	54956577	A	G	SNP	AURKA	ENST00000312783	human	ensembl	74_37	-1	known	missense	c.617	p.V206A	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	AURKA	HGNC	ENSG00000087586				97	0	0	66	5	7.04225
BMP7	0	genome.wustl.edu	37	20	55748227	55748227	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	55748227	55748227	A	G	SNP	BMP7	ENST00000450594	human	ensembl	74_37	-1	novel	missense	c.1175	p.V392A	0.000	smart_TGF-b_C	pfam_TGF-b_N,pfam_TGF-b_C,smart_TGF-b_C	-	no_errors	BMP7	HGNC	ENSG00000101144				23	0	0	17	4	19.0476
C20orf85	0	genome.wustl.edu	37	20	56735739	56735739	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	56735739	56735739	C	T	SNP	C20orf85	ENST00000371168	human	ensembl	74_37	+1	known	missense	c.275	p.P92L	0.988	NULL	NULL	-	no_errors	C20orf85	HGNC	ENSG00000124237				26	0	0	30	3	9.09091
STX16-NPEPL1	0	genome.wustl.edu	37	20	57244488	57244488	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	57244488	57244488	G	A	SNP	STX16-NPEPL1	ENST00000530122	human	ensembl	74_37	+1	known	missense	c.535	p.A179T	1.000	superfamily_t-SNARE	pfam_T_SNARE_dom,pfam_Syntaxin_N,superfamily_t-SNARE,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	STX16-NPEPL1	HGNC	ENSG00000254995				33	0	0	39	4	9.30233
GNAS	0	genome.wustl.edu	37	20	57429108	57429108	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	57429108	57429108	C	T	SNP	GNAS	ENST00000371100	human	ensembl	74_37	+1	putative	missense	c.788	p.A263V	0.988	NULL	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_S,prints_Gprotein_alpha_su	-	no_errors	GNAS	HGNC	ENSG00000087460				13	0	0	9	6	40
TUBB1	0	genome.wustl.edu	37	20	57599377	57599377	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	57599377	57599377	A	G	SNP	TUBB1	ENST00000217133	human	ensembl	74_37	+1	known	missense	c.895	p.T299A	1.000	pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tub_FtsZ_C,smart_Tubulin/FtsZ_2-layer-sand-dom	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,pfam_Misato_II_tubulin-like,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin,prints_Gamma_tubulin,prints_Alpha_tubulin	-	no_errors	TUBB1	HGNC	ENSG00000101162				44	0	0	37	3	7.5
ZNF831	0	genome.wustl.edu	37	20	57766438	57766438	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	57766438	57766438	C	T	SNP	ZNF831	ENST00000371030	human	ensembl	74_37	+1	novel	missense	c.364	p.P122S	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF831	HGNC	ENSG00000124203				23	0	0	33	4	10.8108
ZNF831	0	genome.wustl.edu	37	20	57766652	57766652	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	57766652	57766652	C	T	SNP	ZNF831	ENST00000371030	human	ensembl	74_37	+1	novel	missense	c.578	p.T193M	0.997	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF831	HGNC	ENSG00000124203				79	0	0	75	17	18.4783
ZNF831	0	genome.wustl.edu	37	20	57766659	57766659	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	57766659	57766659	G	A	SNP	ZNF831	ENST00000371030	human	ensembl	74_37	+1	novel	silent	c.585	p.T195	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF831	HGNC	ENSG00000124203				79	0	0	81	9	10
FAM217B	0	genome.wustl.edu	37	20	58519370	58519370	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	58519370	58519370	A	G	SNP	FAM217B	ENST00000358293	human	ensembl	74_37	+1	known	silent	c.372	p.P124	0.000	NULL	NULL	-	no_errors	FAM217B	HGNC	ENSG00000196227				87	0	0	75	5	6.25
MIR646	0	genome.wustl.edu	37	20	58883599	58883599	+	RNA	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	58883599	58883599	T	C	SNP	MIR646	ENST00000385067	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MIR646	HGNC	ENSG00000207802				72	0	0	55	6	9.83607
MCM8	0	genome.wustl.edu	37	20	5933145	5933145	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	5933145	5933145	A	G	SNP	MCM8	ENST00000378886	human	ensembl	74_37	+1	known	missense	c.224	p.Y75C	1.000	NULL	pfam_MCM_DNA-dep_ATPase,pfam_Mg_chelatse_chII,pfam_ATPase_dyneun-rel_AAA,superfamily_NA-bd_OB-fold,superfamily_P-loop_NTPase,smart_MCM_DNA-dep_ATPase,smart_AAA+_ATPase,pfscan_MCM_DNA-dep_ATPase,prints_MCM_DNA-dep_ATPase	-	no_errors	MCM8	HGNC	ENSG00000125885				166	0	0	114	7	5.78512
MCM8	0	genome.wustl.edu	37	20	5948575	5948575	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	5948575	5948575	G	T	SNP	MCM8	ENST00000378886	human	ensembl	74_37	+1	known	missense	c.1127	p.G376V	0.017	smart_MCM_DNA-dep_ATPase	pfam_MCM_DNA-dep_ATPase,pfam_Mg_chelatse_chII,pfam_ATPase_dyneun-rel_AAA,superfamily_NA-bd_OB-fold,superfamily_P-loop_NTPase,smart_MCM_DNA-dep_ATPase,smart_AAA+_ATPase,pfscan_MCM_DNA-dep_ATPase,prints_MCM_DNA-dep_ATPase	-	no_errors	MCM8	HGNC	ENSG00000125885				135	0	0	72	33	31.4286
C20orf166-AS1	0	genome.wustl.edu	37	20	61143670	61143670	+	RNA	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	61143670	61143670	G	A	SNP	C20orf166-AS1	ENST00000412495	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.140	-	-	-	no_errors	C20orf166-AS1	HGNC	ENSG00000174403				61	0	0	69	16	18.8235
NTSR1	0	genome.wustl.edu	37	20	61391524	61391524	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	61391524	61391524	C	T	SNP	NTSR1	ENST00000370501	human	ensembl	74_37	+1	known	missense	c.1162	p.R388C	0.004	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_NT1_rcpt,prints_GPCR_Rhodpsn,prints_NT_rcpt	-	no_errors	NTSR1	HGNC	ENSG00000101188				95	0	0	92	23	20
COL20A1	0	genome.wustl.edu	37	20	61941211	61941211	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	61941211	61941211	C	T	SNP	COL20A1	ENST00000326996	human	ensembl	74_37	+1	known	missense	c.1207	p.H403Y	0.021	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_VWF_A,pfam_Collagen,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL20A1	HGNC	ENSG00000101203				31	0	0	14	4	22.2222
CHRNA4	0	genome.wustl.edu	37	20	61981776	61981776	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	61981776	61981776	G	A	SNP	CHRNA4	ENST00000370263	human	ensembl	74_37	-1	known	silent	c.987	p.N329	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNA4	HGNC	ENSG00000101204				72	0	0	67	6	8.21918
KCNQ2	0	genome.wustl.edu	37	20	62038197	62038197	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	62038197	62038197	T	C	SNP	KCNQ2	ENST00000354587	human	ensembl	74_37	-1	known	missense	c.2443	p.I815V	1.000	pfam_Ankyrin-G_BS	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ankyrin-G_BS,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl_volt-dep_KCNQ2,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ2	HGNC	ENSG00000075043				29	0	0	21	5	19.2308
EEF1A2	0	genome.wustl.edu	37	20	62121899	62121899	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	62121899	62121899	C	T	SNP	EEF1A2	ENST00000217182	human	ensembl	74_37	-1	known	missense	c.962	p.R321Q	1.000	pfam_Transl_elong_EFTu/EF1A_2,superfamily_Transl_B-barrel,tigrfam_Transl_elong_EF1A_euk/arc	pfam_EF_GTP-bd_dom,pfam_Transl_elong_EFTu/EF1A_C,pfam_Transl_elong_EFTu/EF1A_2,superfamily_P-loop_NTPase,superfamily_Transl_elong_EF1A/Init_IF2_C,superfamily_Transl_B-barrel,prints_EF_GTP-bd_dom,tigrfam_Transl_elong_EF1A_euk/arc	-	no_errors	EEF1A2	HGNC	ENSG00000101210				89	0	0	61	20	24.6914
HELZ2	0	genome.wustl.edu	37	20	62192702	62192702	+	Splice_Site	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	62192702	62192702	C	T	SNP	HELZ2	ENST00000467148	human	ensembl	74_37	-1	known	splice_site	c.6953+1	e13+1	0.996	-	-	-	no_errors	HELZ2	HGNC	ENSG00000130589				93	0	0	93	10	9.70874
HELZ2	0	genome.wustl.edu	37	20	62196064	62196064	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	62196064	62196064	G	A	SNP	HELZ2	ENST00000467148	human	ensembl	74_37	-1	known	missense	c.4111	p.H1371Y	1.000	NULL	superfamily_P-loop_NTPase	-	no_errors	HELZ2	HGNC	ENSG00000130589				15	0	0	14	3	17.6471
GMEB2	0	genome.wustl.edu	37	20	62223416	62223416	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	62223416	62223416	T	A	SNP	GMEB2	ENST00000266068	human	ensembl	74_37	-1	known	missense	c.911	p.Q304L	1.000	superfamily_Sig_transdc_His_kin_Hpt_dom	pfam_SAND_dom,superfamily_SAND_dom-like,superfamily_Sig_transdc_His_kin_Hpt_dom,smart_SAND_dom,pfscan_SAND_dom	-	no_errors	GMEB2	HGNC	ENSG00000101216				45	0	0	52	4	7.14286
RTEL1	0	genome.wustl.edu	37	20	62324280	62324280	+	Silent	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	62324280	62324280	C	A	SNP	RTEL1	ENST00000318100	human	ensembl	74_37	+1	known	silent	c.2775	p.S925	0.002	NULL	pfam_DEAD_2,superfamily_P-loop_NTPase,smart_Helicase-like_DEXD_c2,smart_ATP-dep_Helicase_C,pfscan_Helic_SF1/SF2_ATP-bd_DinG/Rad3,tigrfam_DNA_helicase_DNA-repair_Rad3	-	no_errors	RTEL1	HGNC	ENSG00000258366				136	1	0.729927	125	15	10.7143
ZBTB46	0	genome.wustl.edu	37	20	62378537	62378537	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	62378537	62378537	C	T	SNP	ZBTB46	ENST00000245663	human	ensembl	74_37	-1	known	missense	c.1516	p.G506S	0.996	NULL	pfam_BTB_POZ,pfam_DUF3342,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB46	HGNC	ENSG00000130584				12	0	0	11	4	26.6667
ZBTB46	0	genome.wustl.edu	37	20	62407049	62407049	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	62407049	62407049	C	A	SNP	ZBTB46	ENST00000245663	human	ensembl	74_37	-1	known	missense	c.1204	p.G402W	1.000	NULL	pfam_BTB_POZ,pfam_DUF3342,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB46	HGNC	ENSG00000130584				57	0	0	71	4	5.33333
UCKL1	0	genome.wustl.edu	37	20	62572016	62572016	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	62572016	62572016	G	A	SNP	UCKL1	ENST00000354216	human	ensembl	74_37	-1	known	silent	c.1233	p.R411	0.969	NULL	pfam_PRK/URK,pfam_CPT,superfamily_P-loop_NTPase,prints_Uridine_kinase,prints_PRK,tigrfam_Uridine_kinase	-	no_errors	UCKL1	HGNC	ENSG00000198276				19	0	0	15	3	16.6667
ZNF512B	0	genome.wustl.edu	37	20	62597536	62597536	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	62597536	62597536	T	A	SNP	ZNF512B	ENST00000217130	human	ensembl	74_37	-1	known	missense	c.992	p.N331I	0.998	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF512B	HGNC	ENSG00000196700				57	0	0	67	5	6.94444
PRPF6	0	genome.wustl.edu	37	20	62626810	62626810	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	62626810	62626810	C	A	SNP	PRPF6	ENST00000266079	human	ensembl	74_37	+1	known	missense	c.746	p.T249N	1.000	NULL	pfam_PRP1_N,smart_HAT,smart_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	PRPF6	HGNC	ENSG00000101161				84	0	0	73	4	5.19481
PRPF6	0	genome.wustl.edu	37	20	62664252	62664252	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	62664252	62664252	T	C	SNP	PRPF6	ENST00000266079	human	ensembl	74_37	+1	known	missense	c.2732	p.L911P	1.000	NULL	pfam_PRP1_N,smart_HAT,smart_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	PRPF6	HGNC	ENSG00000101161				19	0	0	28	2	6.66667
RGS19	0	genome.wustl.edu	37	20	62705223	62705223	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	62705223	62705223	A	T	SNP	RGS19	ENST00000332298	human	ensembl	74_37	-1	known	missense	c.637	p.S213T	0.145	NULL	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS19	HGNC	ENSG00000171700				42	0	0	50	8	13.7931
NPBWR2	0	genome.wustl.edu	37	20	62737989	62737989	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	62737989	62737989	C	T	SNP	NPBWR2	ENST00000369768	human	ensembl	74_37	-1	known	missense	c.196	p.V66I	0.964	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_Neuropept_B/W_rcpt,prints_GPCR_Rhodpsn,prints_Somatstn_rcpt,prints_Opioid_rcpt,prints_NPY_rcpt	-	no_errors	NPBWR2	HGNC	ENSG00000125522				31	0	0	21	7	25
PCMTD2	0	genome.wustl.edu	37	20	62896678	62896678	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	62896678	62896678	T	C	SNP	PCMTD2	ENST00000308824	human	ensembl	74_37	+1	known	missense	c.478	p.Y160H	1.000	pfam_PCMT	pfam_PCMT	-	no_errors	PCMTD2	HGNC	ENSG00000203880				178	0	0	161	10	5.84795
HAO1	0	genome.wustl.edu	37	20	7866431	7866431	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	7866431	7866431	A	G	SNP	HAO1	ENST00000378789	human	ensembl	74_37	-1	known	silent	c.894	p.T298	0.674	pfam_FMN-dep_DH,pfam_Glu_synth_centr_C,pirsf_Alpha-hydoxy_acid_DH_FMN	pfam_FMN-dep_DH,pfam_Glu_synth_centr_C,pirsf_Alpha-hydoxy_acid_DH_FMN	-	no_errors	HAO1	HGNC	ENSG00000101323				154	0	0	126	7	5.26316
PLCB1	0	genome.wustl.edu	37	20	8703028	8703028	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	8703028	8703028	A	G	SNP	PLCB1	ENST00000338037	human	ensembl	74_37	+1	known	missense	c.1541	p.D514G	0.997	pirsf_PLC-beta,superfamily_PLC-like_Pdiesterase_TIM-brl	pirsf_PLC-beta,pfam_PLC-beta_C,pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,prints_Pinositol_PLipase_C,pfscan_C2_dom,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCB1	HGNC	ENSG00000182621				81	0	0	61	6	8.95522
PAK7	0	genome.wustl.edu	37	20	9546626	9546626	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	9546626	9546626	C	T	SNP	PAK7	ENST00000353224	human	ensembl	74_37	-1	known	missense	c.1396	p.A466T	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_CRIB_dom,superfamily_Kinase-like_dom,smart_CRIB_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRIB_dom,pfscan_Prot_kinase_dom	-	no_errors	PAK7	HGNC	ENSG00000101349				163	0	0	132	10	7.04225
USP25	0	genome.wustl.edu	37	21	17172081	17172081	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	21	17172081	17172081	A	T	SNP	USP25	ENST00000400183	human	ensembl	74_37	+1	known	missense	c.561	p.L187F	0.997	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfam_Ubiquitin-int_motif,superfamily_UBA-like,smart_Ubiquitin-int_motif,pfscan_Ubiquitin-int_motif,pfscan_Peptidase_C19/C67	-	no_errors	USP25	HGNC	ENSG00000155313				79	0	0	52	4	7.14286
USP25	0	genome.wustl.edu	37	21	17203831	17203831	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	21	17203831	17203831	A	T	SNP	USP25	ENST00000400183	human	ensembl	74_37	+1	known	missense	c.1876	p.I626F	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfam_Ubiquitin-int_motif,superfamily_UBA-like,smart_Ubiquitin-int_motif,pfscan_Ubiquitin-int_motif,pfscan_Peptidase_C19/C67	-	no_errors	USP25	HGNC	ENSG00000155313				121	0	0	97	9	8.49057
TMPRSS15	0	genome.wustl.edu	37	21	19642347	19642347	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	21	19642347	19642347	C	T	SNP	TMPRSS15	ENST00000284885	human	ensembl	74_37	-1	known	missense	c.2999	p.R1000H	0.946	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,pfam_CUB_dom,pfam_MAM_dom,pfam_SEA_dom,pfam_LDrepeatLR_classA_rpt,pfam_Peptidase_S1A_nudel,pfam_SRCR,superfamily_Trypsin-like_Pept_dom,superfamily_ConA-like_lec_gl_sf,superfamily_CUB_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_Srcr_rcpt-rel,smart_SEA_dom,smart_LDrepeatLR_classA_rpt,smart_CUB_dom,smart_MAM_dom,smart_Srcr_rcpt-rel,smart_Peptidase_S1,pfscan_CUB_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_MAM_dom,pfscan_SEA_dom,pfscan_SRCR,pfscan_Peptidase_S1,prints_Peptidase_S1A,prints_LDrepeatLR_classA_rpt	-	no_errors	TMPRSS15	HGNC	ENSG00000154646				94	0	0	85	5	5.55556
NCAM2	0	genome.wustl.edu	37	21	22746311	22746311	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	21	22746311	22746311	G	A	SNP	NCAM2	ENST00000400546	human	ensembl	74_37	+1	known	silent	c.1173	p.K391	0.999	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom,prints_Neural_cell_adh	-	no_errors	NCAM2	HGNC	ENSG00000154654				87	0	0	51	8	13.5593
ATP5J	0	genome.wustl.edu	37	21	27102015	27102015	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	21	27102015	27102015	C	T	SNP	ATP5J	ENST00000457143	human	ensembl	74_37	-1	known	missense	c.115	p.A39T	1.000	pfam_ATPase_F0-cplx_f6su_mt	pfam_ATPase_F0-cplx_f6su_mt,superfamily_ATPase_F0-cplx_f6su_mt	-	no_errors	ATP5J	HGNC	ENSG00000154723				53	0	0	38	11	22.449
CYYR1	0	genome.wustl.edu	37	21	27852713	27852713	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	21	27852713	27852713	A	C	SNP	CYYR1	ENST00000299340	human	ensembl	74_37	-1	known	missense	c.212	p.V71G	0.999	pfam_CYYR1	pfam_CYYR1	-	no_errors	CYYR1	HGNC	ENSG00000166265				114	0	0	95	13	12.037
CYYR1	0	genome.wustl.edu	37	21	27945320	27945320	+	Silent	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	21	27945320	27945320	G	T	SNP	CYYR1	ENST00000435845	human	ensembl	74_37	-1	known	silent	c.264	p.S88	0.003	NULL	pfam_CYYR1	-	no_errors	CYYR1	HGNC	ENSG00000166265				17	0	0	20	6	23.0769
ADAMTS1	0	genome.wustl.edu	37	21	28212379	28212379	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	21	28212379	28212379	G	A	SNP	ADAMTS1	ENST00000284984	human	ensembl	74_37	-1	known	missense	c.1667	p.T556M	0.996	superfamily_Thrombospondin_1_rpt	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Pept_M12B_ADAM-TS1,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS1	HGNC	ENSG00000154734				43	0	0	36	5	12.1951
ADAMTS5	0	genome.wustl.edu	37	21	28302342	28302342	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	21	28302342	28302342	G	A	SNP	ADAMTS5	ENST00000284987	human	ensembl	74_37	-1	known	silent	c.2088	p.S696	0.006	prints_Peptidase_M12B_ADAM-TS	pfam_ADAM_spacer1,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Pept_M12B_ADAM-TS5,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS5	HGNC	ENSG00000154736				208	0	0	140	35	20
RWDD2B	0	genome.wustl.edu	37	21	30380219	30380219	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	21	30380219	30380219	A	T	SNP	RWDD2B	ENST00000493196	human	ensembl	74_37	-1	known	missense	c.588	p.H196Q	1.000	pfam_DUF1115,pirsf_UCP038021_RWD	pfam_DUF1115,pfam_RWD-domain,superfamily_UBQ-conjugating_enzyme/RWD,smart_RWD-domain,pirsf_UCP038021_RWD,pfscan_RWD-domain	-	no_errors	RWDD2B	HGNC	ENSG00000156253				120	0	0	98	13	11.7117
USP16	0	genome.wustl.edu	37	21	30409640	30409640	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	21	30409640	30409640	A	G	SNP	USP16	ENST00000334352	human	ensembl	74_37	+1	known	silent	c.492	p.L164	0.997	NULL	pfam_Peptidase_C19/C67,pfam_Znf_UBP,smart_Znf_UBP,pfscan_Znf_UBP,pfscan_Peptidase_C19/C67	-	no_errors	USP16	HGNC	ENSG00000156256				78	0	0	45	8	15.0943
GRIK1	0	genome.wustl.edu	37	21	30910122	30910122	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	21	30910122	30910122	C	T	SNP	GRIK1	ENST00000327783	human	ensembl	74_37	-1	novel	silent	c.2691	p.E897	1.000	NULL	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK1	HGNC	ENSG00000171189				257	0	0	146	14	8.75
KRTAP23-1	0	genome.wustl.edu	37	21	31720870	31720870	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	21	31720870	31720870	G	T	SNP	KRTAP23-1	ENST00000334160	human	ensembl	74_37	-1	known	missense	c.55	p.L19M	0.000	pfam_KRTAP_PMG	pfam_KRTAP_PMG	-	no_errors	KRTAP23-1	HGNC	ENSG00000186980				92	0	0	67	7	9.45946
KRTAP13-4	0	genome.wustl.edu	37	21	31802768	31802768	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	21	31802768	31802768	A	T	SNP	KRTAP13-4	ENST00000334068	human	ensembl	74_37	+1	known	missense	c.175	p.A59S	0.001	pfam_KRTAP_PMG	pfam_KRTAP_PMG	-	no_errors	KRTAP13-4	HGNC	ENSG00000186971				67	0	0	51	5	8.92857
PAXBP1	0	genome.wustl.edu	37	21	34117160	34117160	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	21	34117160	34117160	T	C	SNP	PAXBP1	ENST00000331923	human	ensembl	74_37	-1	known	silent	c.2133	p.T711	0.007	pfam_GCFC_dom	pfam_GCFC_dom	-	no_errors	PAXBP1	HGNC	ENSG00000159086				223	0	0	125	18	12.5874
IFNAR2	0	genome.wustl.edu	37	21	34617301	34617301	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	21	34617301	34617301	T	A	SNP	IFNAR2	ENST00000342136	human	ensembl	74_37	+1	known	missense	c.143	p.F48Y	0.025	superfamily_Fibronectin_type3	pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Fibronectin_type3	-	no_errors	IFNAR2	HGNC	ENSG00000159110				127	0	0	110	7	5.98291
IFNAR2	0	genome.wustl.edu	37	21	34619165	34619165	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	21	34619165	34619165	T	C	SNP	IFNAR2	ENST00000342136	human	ensembl	74_37	+1	known	missense	c.364	p.C122R	0.057	superfamily_Fibronectin_type3	pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Fibronectin_type3	-	no_errors	IFNAR2	HGNC	ENSG00000159110				43	0	0	34	5	12.8205
IL10RB	0	genome.wustl.edu	37	21	34660535	34660535	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	21	34660535	34660535	C	T	SNP	IL10RB	ENST00000290200	human	ensembl	74_37	+1	known	missense	c.773	p.P258L	0.031	NULL	pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Fibronectin_type3	-	no_errors	IL10RB	HGNC	ENSG00000243646				92	0	0	68	23	25.2747
TMEM50B	0	genome.wustl.edu	37	21	34837700	34837700	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	21	34837700	34837700	T	C	SNP	TMEM50B	ENST00000420455	human	ensembl	74_37	-1	known	missense	c.229	p.N77D	1.000	pfam_UPF0220	pfam_UPF0220	-	no_errors	TMEM50B	HGNC	ENSG00000142188				95	0	0	75	7	8.53659
GART	0	genome.wustl.edu	37	21	34897169	34897169	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	21	34897169	34897169	T	G	SNP	GART	ENST00000381815	human	ensembl	74_37	-1	known	missense	c.1205	p.E402A	0.435	pfam_PRibGlycinamide_synth_C-dom,superfamily_Rudment_hybrid_motif,tigrfam_PRibGlycinamide_synth	pfam_PRibGlycinamid_synth_ATP-grasp,pfam_Formyl_transf_N,pfam_PRibGlycinamide_synth_N,pfam_AIR_synth_C_dom,pfam_PRibGlycinamide_synth_C-dom,pfam_AIR_synth_N_dom,pfam_ATP-grasp_carboxylate-amine,pfam_CbamoylP_synth_lsu-like_ATP-bd,superfamily_Formyl_transf_N,superfamily_AIR_synth_C_dom,superfamily_PurM_N-like,superfamily_PreATP-grasp_dom,superfamily_Rudment_hybrid_motif,pfscan_ATP-grasp,tigrfam_PRibGlycinamide_synth,tigrfam_PurM_cligase,tigrfam_PurN_trans	-	no_errors	GART	HGNC	ENSG00000159131				142	0	0	137	12	8.05369
SON	0	genome.wustl.edu	37	21	34923142	34923142	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	21	34923142	34923142	G	A	SNP	SON	ENST00000356577	human	ensembl	74_37	+1	known	silent	c.1605	p.G535	1.000	NULL	pfam_G_patch_dom,superfamily_WD40_repeat_dom,smart_G_patch_dom,pfscan_G_patch_dom,pfscan_dsRNA-bd_dom	-	no_errors	SON	HGNC	ENSG00000159140				126	0	0	107	34	24.1135
SON	0	genome.wustl.edu	37	21	34932282	34932282	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	21	34932282	34932282	C	T	SNP	SON	ENST00000300278	human	ensembl	74_37	+1	known	missense	c.6757	p.P2253S	1.000	NULL	superfamily_WD40_repeat_dom	-	no_errors	SON	HGNC	ENSG00000159140				52	0	0	52	4	7.14286
ITSN1	0	genome.wustl.edu	37	21	35247781	35247781	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	21	35247781	35247781	C	A	SNP	ITSN1	ENST00000381285	human	ensembl	74_37	+1	known	missense	c.4297	p.L1433M	1.000	superfamily_DH-domain	pfam_SH3_domain,pfam_SH3_2,pfam_DH-domain,pfam_C2_dom,superfamily_DH-domain,superfamily_C2_dom,superfamily_SH3_domain,superfamily_P-loop_NTPase,smart_EPS15_homology,smart_EF_hand_dom,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_C2_dom,pfscan_EF_hand_dom,pfscan_EPS15_homology,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain,prints_SH3_domain,prints_p67phox	-	no_errors	ITSN1	HGNC	ENSG00000205726				78	0	0	71	4	5.33333
SLC5A3	0	genome.wustl.edu	37	21	35468693	35468693	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	21	35468693	35468693	G	A	SNP	SLC5A3	ENST00000381151	human	ensembl	74_37	+1	known	missense	c.1196	p.R399H	1.000	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A3	HGNC	ENSG00000198743				86	0	0	92	6	6.12245
RUNX1	0	genome.wustl.edu	37	21	36206799	36206799	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	21	36206799	36206799	A	G	SNP	RUNX1	ENST00000300305	human	ensembl	74_37	-1	known	missense	c.713	p.V238A	1.000	pirsf_TF_Runt-rel_RUNX	pfam_Runt_dom,pfam_RunxI_C_dom,superfamily_p53-like_TF_DNA-bd,pirsf_TF_Runt-rel_RUNX,pfscan_Runt_dom,prints_AML1_Runt	-	no_errors	RUNX1	HGNC	ENSG00000159216				132	0	0	121	13	9.70149
MIR802	0	genome.wustl.edu	37	21	37093039	37093039	+	RNA	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	21	37093039	37093039	A	T	SNP	MIR802	ENST00000390235	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MIR802	HGNC	ENSG00000211590				101	0	0	77	7	8.33333
SETD4	0	genome.wustl.edu	37	21	37408417	37408417	+	Nonstop_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	21	37408417	37408417	A	G	SNP	SETD4	ENST00000332131	human	ensembl	74_37	-1	known	nonstop	c.1321	p.*441R	0.071	NULL	pfam_Rubisco_LSMT_subst-bd,pfam_SET_dom,pirsf_Lys_MTase_YDR198C_prd	-	no_errors	SETD4	HGNC	ENSG00000185917				209	0	0	128	35	21.4724
CBR3	0	genome.wustl.edu	37	21	37507593	37507593	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	21	37507593	37507593	C	T	SNP	CBR3	ENST00000290354	human	ensembl	74_37	+1	known	missense	c.103	p.L35F	1.000	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	CBR3	HGNC	ENSG00000159231				31	0	0	30	4	11.7647
CHAF1B	0	genome.wustl.edu	37	21	37781130	37781130	+	Splice_Site	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	21	37781130	37781130	T	C	SNP	CHAF1B	ENST00000314103	human	ensembl	74_37	+1	known	splice_site	c.827+2	e8+2	1.000	-	-	-	no_errors	CHAF1B	HGNC	ENSG00000159259				74	0	0	34	10	22.7273
HLCS	0	genome.wustl.edu	37	21	38309119	38309119	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	21	38309119	38309119	G	A	SNP	HLCS	ENST00000336648	human	ensembl	74_37	-1	known	missense	c.626	p.P209L	1.000	NULL	pfam_BPL_LipA_LipB,pfam_BPL_C,tigrfam_Biotin_CoA_COase_ligase	-	no_errors	HLCS	HGNC	ENSG00000159267				69	0	0	63	4	5.97015
TTC3	0	genome.wustl.edu	37	21	38538826	38538826	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	21	38538826	38538826	A	G	SNP	TTC3	ENST00000354749	human	ensembl	74_37	+1	known	missense	c.4310	p.H1437R	0.002	NULL	pfam_Znf_C3HC4_RING-type,superfamily_DEATH-like_dom,smart_TPR_repeat,smart_Znf_RING,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Znf_RING	-	no_errors	TTC3	HGNC	ENSG00000182670				96	0	0	63	10	13.6986
DSCR9	0	genome.wustl.edu	37	21	38593691	38593691	+	RNA	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	21	38593691	38593691	G	A	SNP	DSCR9	ENST00000454482	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	DSCR9	HGNC	ENSG00000230366				65	0	0	49	5	9.25926
DSCR3	0	genome.wustl.edu	37	21	38604795	38604795	+	RNA	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	21	38604795	38604795	G	A	SNP	DSCR3	ENST00000399000	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	DSCR3	HGNC	ENSG00000157538				63	0	0	53	8	13.1148
KCNJ15	0	genome.wustl.edu	37	21	39671242	39671242	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	21	39671242	39671242	C	T	SNP	KCNJ15	ENST00000328656	human	ensembl	74_37	+1	known	missense	c.59	p.A20V	0.000	pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir1.3	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir1.3,prints_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir1.1	-	no_errors	KCNJ15	HGNC	ENSG00000157551				60	0	0	36	17	32.0755
KCNJ15	0	genome.wustl.edu	37	21	39671343	39671343	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	21	39671343	39671343	C	A	SNP	KCNJ15	ENST00000328656	human	ensembl	74_37	+1	known	missense	c.160	p.L54M	0.895	pfam_K_chnl_inward-rec_Kir,pirsf_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir1.3,prints_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir1.1	-	no_errors	KCNJ15	HGNC	ENSG00000157551				112	0	0	81	12	12.9032
FLJ45139	0	genome.wustl.edu	37	21	40250774	40250774	+	RNA	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	21	40250774	40250774	C	A	SNP	FLJ45139	ENST00000380931	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.015	-	-	-	no_errors	AF064858.6	Clone_based_vega_gene	ENSG00000205622				170	0	0	112	14	11.1111
BRWD1	0	genome.wustl.edu	37	21	40670420	40670420	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	21	40670420	40670420	C	G	SNP	BRWD1	ENST00000333229	human	ensembl	74_37	-1	known	missense	c.287	p.S96T	1.000	NULL	pfam_WD40_repeat,pfam_Bromodomain,superfamily_WD40_repeat_dom,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Bromodomain	-	no_errors	BRWD1	HGNC	ENSG00000185658				223	0	0	175	26	12.9353
IGSF5	0	genome.wustl.edu	37	21	41137591	41137591	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	21	41137591	41137591	T	C	SNP	IGSF5	ENST00000380588	human	ensembl	74_37	+1	novel	missense	c.230	p.V77A	0.072	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	IGSF5	HGNC	ENSG00000183067				46	0	0	37	3	7.5
DSCAM	0	genome.wustl.edu	37	21	41423886	41423886	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	21	41423886	41423886	C	T	SNP	DSCAM	ENST00000400454	human	ensembl	74_37	-1	known	silent	c.5184	p.T1728	0.885	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub2,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	DSCAM	HGNC	ENSG00000171587				168	0	0	119	38	24.2038
DSCAM	0	genome.wustl.edu	37	21	41452117	41452117	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	21	41452117	41452117	C	T	SNP	DSCAM	ENST00000400454	human	ensembl	74_37	-1	known	missense	c.4382	p.R1461H	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub2,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	DSCAM	HGNC	ENSG00000171587				166	0	0	118	8	6.34921
DSCAM	0	genome.wustl.edu	37	21	41465654	41465654	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	21	41465654	41465654	C	A	SNP	DSCAM	ENST00000400454	human	ensembl	74_37	-1	known	missense	c.3844	p.A1282S	0.997	superfamily_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub2,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	DSCAM	HGNC	ENSG00000171587				46	0	0	56	3	5.08475
DSCAM	0	genome.wustl.edu	37	21	41648131	41648131	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	21	41648131	41648131	G	A	SNP	DSCAM	ENST00000400454	human	ensembl	74_37	-1	known	missense	c.2249	p.S750L	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub2,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	DSCAM	HGNC	ENSG00000171587				82	0	0	56	15	21.1268
MX1	0	genome.wustl.edu	37	21	42804080	42804080	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	21	42804080	42804080	T	C	SNP	MX1	ENST00000398598	human	ensembl	74_37	+1	known	missense	c.83	p.V28A	0.000	NULL	pfam_Dynamin_central,pfam_Dynamin_GTPase,pfam_GED,superfamily_P-loop_NTPase,smart_Dynamin_GTPase,smart_GED,prints_Dynamin_SF	-	no_errors	MX1	HGNC	ENSG00000157601				110	0	0	96	6	5.88235
ZBTB21	0	genome.wustl.edu	37	21	43412166	43412166	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	21	43412166	43412166	C	T	SNP	ZBTB21	ENST00000310826	human	ensembl	74_37	-1	known	missense	c.2039	p.R680H	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB21	HGNC	ENSG00000173276				184	0	0	144	18	11.1111
ZBTB21	0	genome.wustl.edu	37	21	43413493	43413493	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	21	43413493	43413493	T	C	SNP	ZBTB21	ENST00000310826	human	ensembl	74_37	-1	known	missense	c.712	p.N238D	0.011	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB21	HGNC	ENSG00000173276				68	0	0	57	6	9.52381
UMODL1	0	genome.wustl.edu	37	21	43496156	43496156	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	21	43496156	43496156	G	A	SNP	UMODL1	ENST00000408989	human	ensembl	74_37	+1	known	missense	c.119	p.R40H	0.002	pfam_EMI_domain,pfscan_EMI_domain	pfam_ZP_dom,pfam_SEA_dom,pfam_EGF-like_Ca-bd_dom,pfam_EMI_domain,pfam_WAP-type_4-diS_core,superfamily_Fibronectin_type3,superfamily_WAP-type_4-diS_core,smart_WAP-type_4-diS_core,smart_EGF-like_Ca-bd_dom,smart_Fibronectin_type3,smart_ZP_dom,pfscan_EG-like_dom,pfscan_EMI_domain,pfscan_Fibronectin_type3,pfscan_ZP_dom,prints_ZP_dom	-	no_errors	UMODL1	HGNC	ENSG00000177398				120	0	0	123	12	8.88889
ABCG1	0	genome.wustl.edu	37	21	43704740	43704740	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	21	43704740	43704740	A	G	SNP	ABCG1	ENST00000398437	human	ensembl	74_37	+1	known	missense	c.1243	p.I415V	1.000	superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,tigrfam_Pigment_permease	pfam_ABC_2_trans,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,tigrfam_Pigment_permease	-	no_errors	ABCG1	HGNC	ENSG00000160179				76	0	0	73	7	8.75
SLC37A1	0	genome.wustl.edu	37	21	43979141	43979141	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	21	43979141	43979141	C	A	SNP	SLC37A1	ENST00000352133	human	ensembl	74_37	+1	known	missense	c.923	p.P308H	0.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC37A1	HGNC	ENSG00000160190				38	0	0	44	7	13.7255
WDR4	0	genome.wustl.edu	37	21	44270183	44270183	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	21	44270183	44270183	C	T	SNP	WDR4	ENST00000330317	human	ensembl	74_37	-1	known	silent	c.1215	p.P405	0.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR4	HGNC	ENSG00000160193				167	0	0	155	40	20.5128
WDR4	0	genome.wustl.edu	37	21	44273682	44273682	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	21	44273682	44273682	C	T	SNP	WDR4	ENST00000330317	human	ensembl	74_37	-1	known	nonsense	c.972	p.W324*	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR4	HGNC	ENSG00000160193				31	0	0	29	3	9.375
CBS	0	genome.wustl.edu	37	21	44482463	44482463	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	21	44482463	44482463	T	C	SNP	CBS	ENST00000398168	human	ensembl	74_37	-1	known	missense	c.997	p.T333A	0.876	pfam_Trp_syn_b_sub_like_PLP_eny_SF,superfamily_Trp_syn_b_sub_like_PLP_eny_SF,tigrfam_Cysta_beta_synth	pfam_Trp_syn_b_sub_like_PLP_eny_SF,pfam_CBS_dom,superfamily_Trp_syn_b_sub_like_PLP_eny_SF,smart_CBS_dom,tigrfam_Cysta_beta_synth	-	no_errors	CBS	HGNC	ENSG00000160200				21	0	0	16	3	15.7895
U2AF1	0	genome.wustl.edu	37	21	44515553	44515553	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	21	44515553	44515553	C	T	SNP	U2AF1	ENST00000291552	human	ensembl	74_37	-1	known	missense	c.343	p.V115I	1.000	pfam_RRM_dom,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom,prints_U2_small	pfam_Znf_CCCH,pfam_RRM_dom,smart_Znf_CCCH,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom,prints_U2_small	-	no_errors	U2AF1	HGNC	ENSG00000160201				94	0	0	88	23	20.7207
TRAPPC10	0	genome.wustl.edu	37	21	45502855	45502855	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	21	45502855	45502855	G	A	SNP	TRAPPC10	ENST00000291574	human	ensembl	74_37	+1	known	missense	c.1910	p.S637N	0.981	NULL	NULL	-	no_errors	TRAPPC10	HGNC	ENSG00000160218				159	0	0	131	36	21.5569
DNMT3L	0	genome.wustl.edu	37	21	45668961	45668961	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	21	45668961	45668961	C	T	SNP	DNMT3L	ENST00000270172	human	ensembl	74_37	-1	known	missense	c.943	p.G315R	0.000	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	DNMT3L	HGNC	ENSG00000142182				35	0	0	26	10	27.7778
TSPEAR	0	genome.wustl.edu	37	21	45941774	45941774	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	21	45941774	45941774	A	T	SNP	TSPEAR	ENST00000323084	human	ensembl	74_37	-1	known	missense	c.1558	p.S520T	1.000	pfam_EPTP,pfscan_EAR	pfam_EPTP,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_EAR	-	no_errors	TSPEAR	HGNC	ENSG00000175894				51	0	0	45	5	10
KRTAP10-1	0	genome.wustl.edu	37	21	45959687	45959687	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	21	45959687	45959687	T	G	SNP	KRTAP10-1	ENST00000400375	human	ensembl	74_37	-1	known	missense	c.347	p.K116T	0.001	NULL	NULL	-	no_errors	KRTAP10-1	HGNC	ENSG00000215455				81	0	0	79	7	8.13953
KRTAP10-3	0	genome.wustl.edu	37	21	45978503	45978503	+	Nonsense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	21	45978503	45978503	A	T	SNP	KRTAP10-3	ENST00000391620	human	ensembl	74_37	-1	known	nonsense	c.96	p.C32*	0.001	NULL	NULL	-	no_errors	KRTAP10-3	HGNC	ENSG00000212935				47	0	0	36	7	16.2791
PTTG1IP	0	genome.wustl.edu	37	21	46276138	46276138	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	21	46276138	46276138	C	T	SNP	PTTG1IP	ENST00000330938	human	ensembl	74_37	-1	known	missense	c.419	p.R140Q	0.936	NULL	smart_Plexin-like_fold	-	no_errors	PTTG1IP	HGNC	ENSG00000183255				96	0	0	67	19	22.093
COL18A1	0	genome.wustl.edu	37	21	46888239	46888239	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	21	46888239	46888239	G	A	SNP	COL18A1	ENST00000359759	human	ensembl	74_37	+1	known	missense	c.1435	p.V479I	0.000	superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	pfam_Collagenase_NC10/endostatin,pfam_DUF959_COL18_N,pfam_Collagen,pfam_Frizzled_dom,superfamily_C-type_lectin_fold,superfamily_ConA-like_lec_gl_sf,superfamily_Frizzled_dom,smart_Frizzled_dom,smart_Laminin_G,pfscan_Frizzled_dom	-	no_errors	COL18A1	HGNC	ENSG00000182871				78	0	0	46	27	36.9863
COL18A1	0	genome.wustl.edu	37	21	46925753	46925753	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	21	46925753	46925753	T	G	SNP	COL18A1	ENST00000359759	human	ensembl	74_37	+1	known	missense	c.4334	p.V1445G	0.984	pfam_Collagenase_NC10/endostatin	pfam_Collagenase_NC10/endostatin,pfam_DUF959_COL18_N,pfam_Collagen,pfam_Frizzled_dom,superfamily_C-type_lectin_fold,superfamily_ConA-like_lec_gl_sf,superfamily_Frizzled_dom,smart_Frizzled_dom,smart_Laminin_G,pfscan_Frizzled_dom	-	no_errors	COL18A1	HGNC	ENSG00000182871				31	0	0	30	3	9.09091
PCBP3	0	genome.wustl.edu	37	21	47360012	47360012	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	21	47360012	47360012	G	A	SNP	PCBP3	ENST00000400314	human	ensembl	74_37	+1	known	silent	c.978	p.Q326	1.000	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	pfam_KH_dom_type_1,pfam_KH_dom_type_2,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	PCBP3	HGNC	ENSG00000183570				76	0	0	80	6	6.97674
PCBP3	0	genome.wustl.edu	37	21	47360061	47360061	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	21	47360061	47360061	A	G	SNP	PCBP3	ENST00000400314	human	ensembl	74_37	+1	known	missense	c.1027	p.I343V	1.000	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	pfam_KH_dom_type_1,pfam_KH_dom_type_2,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	PCBP3	HGNC	ENSG00000183570				55	0	0	53	7	11.6667
COL6A1	0	genome.wustl.edu	37	21	47423435	47423435	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	21	47423435	47423435	G	A	SNP	COL6A1	ENST00000361866	human	ensembl	74_37	+1	known	silent	c.2595	p.T865	0.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A1	HGNC	ENSG00000142156				39	0	0	35	6	14.6341
COL6A2	0	genome.wustl.edu	37	21	47545929	47545929	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	21	47545929	47545929	C	T	SNP	COL6A2	ENST00000300527	human	ensembl	74_37	+1	known	missense	c.2200	p.R734C	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A2	HGNC	ENSG00000142173				75	0	0	54	17	23.9437
LSS	0	genome.wustl.edu	37	21	47611134	47611134	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	21	47611134	47611134	C	T	SNP	LSS	ENST00000356396	human	ensembl	74_37	-1	known	missense	c.2083	p.V695I	1.000	superfamily_Terpenoid_cyclase/PrenylTrfase,tigrfam_Squalene_cyclase	pfam_Prenyltrans,superfamily_Terpenoid_cyclase/PrenylTrfase,tigrfam_Squalene_cyclase	-	no_errors	LSS	HGNC	ENSG00000160285				97	0	0	73	22	23.1579
LSS	0	genome.wustl.edu	37	21	47625811	47625811	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	21	47625811	47625811	C	T	SNP	LSS	ENST00000356396	human	ensembl	74_37	-1	known	missense	c.1609	p.V537M	1.000	superfamily_Terpenoid_cyclase/PrenylTrfase,tigrfam_Squalene_cyclase	pfam_Prenyltrans,superfamily_Terpenoid_cyclase/PrenylTrfase,tigrfam_Squalene_cyclase	-	no_errors	LSS	HGNC	ENSG00000160285				28	0	0	21	7	25
DIP2A	0	genome.wustl.edu	37	21	47975893	47975893	+	Splice_Site	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	21	47975893	47975893	A	G	SNP	DIP2A	ENST00000318711	human	ensembl	74_37	+1	known	splice_site	c.3392-2	e29-2	1.000	-	-	-	no_errors	DIP2A	HGNC	ENSG00000160305				103	0	0	94	10	9.61538
GAB4	0	genome.wustl.edu	37	22	17449187	17449187	+	Splice_Site	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	17449187	17449187	C	T	SNP	GAB4	ENST00000400588	human	ensembl	74_37	-1	known	splice_site	c.1023+1	e5+1	1.000	-	-	-	no_errors	GAB4	HGNC	ENSG00000215568				50	0	0	28	12	30
IL17RA	0	genome.wustl.edu	37	22	17589268	17589268	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	17589268	17589268	G	A	SNP	IL17RA	ENST00000319363	human	ensembl	74_37	+1	known	missense	c.1159	p.D387N	1.000	pfam_SEFIR	pfam_SEFIR	-	no_errors	IL17RA	HGNC	ENSG00000177663				41	0	0	31	14	31.1111
IL17RA	0	genome.wustl.edu	37	22	17589757	17589757	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	17589757	17589757	G	A	SNP	IL17RA	ENST00000319363	human	ensembl	74_37	+1	known	missense	c.1648	p.V550I	0.133	NULL	pfam_SEFIR	-	no_errors	IL17RA	HGNC	ENSG00000177663				19	0	0	20	2	9.09091
CECR5	0	genome.wustl.edu	37	22	17621952	17621952	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	17621952	17621952	G	A	SNP	CECR5	ENST00000336737	human	ensembl	74_37	-1	known	missense	c.743	p.P248L	1.000	superfamily_HAD-like_dom,tigrfam_HAD-SF_hydro_IIA_CECR5,tigrfam_HAD-SF_hydro_IIA	superfamily_HAD-like_dom,tigrfam_HAD-SF_hydro_IIA_CECR5,tigrfam_HAD-SF_hydro_IIA	-	no_errors	CECR5	HGNC	ENSG00000069998				44	0	0	61	4	6.15385
BCL2L13	0	genome.wustl.edu	37	22	18171803	18171803	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	18171803	18171803	C	T	SNP	BCL2L13	ENST00000317582	human	ensembl	74_37	+1	known	missense	c.281	p.A94V	0.994	NULL	pfam_Blc2_fam,pfscan_Bcl2-like	-	no_errors	BCL2L13	HGNC	ENSG00000099968				113	0	0	86	8	8.51064
BCL2L13	0	genome.wustl.edu	37	22	18209815	18209815	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	18209815	18209815	G	A	SNP	BCL2L13	ENST00000317582	human	ensembl	74_37	+1	known	missense	c.973	p.A325T	0.002	NULL	pfam_Blc2_fam,pfscan_Bcl2-like	-	no_errors	BCL2L13	HGNC	ENSG00000099968				65	0	0	54	8	12.9032
MICAL3	0	genome.wustl.edu	37	22	18304816	18304816	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	18304816	18304816	G	A	SNP	MICAL3	ENST00000441493	human	ensembl	74_37	-1	known	missense	c.3428	p.S1143L	0.000	NULL	pfam_DUF3585,pfam_CH-domain,pfam_CAMSAP_CH,pfam_Znf_LIM,pfam_mOase_FAD-bd,superfamily_CH-domain,smart_CH-domain,smart_Znf_LIM,pfscan_CH-domain,pfscan_Znf_LIM,prints_Rng_hydrolase-like	-	no_errors	MICAL3	HGNC	ENSG00000243156				145	0	0	117	7	5.64516
ENSG00000161103	0	genome.wustl.edu	37	22	18844766	18844766	+	RNA	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	18844766	18844766	G	A	SNP	ENSG00000161103	ENST00000412938	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.223	-	-	-	no_errors	AC008132.13	Clone_based_vega_gene	ENSG00000161103				14	0	0	12	5	29.4118
DGCR2	0	genome.wustl.edu	37	22	19076920	19076920	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	19076920	19076920	C	T	SNP	DGCR2	ENST00000263196	human	ensembl	74_37	-1	known	missense	c.163	p.A55T	0.176	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,superfamily_C-type_lectin_fold,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_C-type_lectin,smart_VWF_C,pfscan_LDrepeatLR_classA_rpt,pfscan_C-type_lectin	-	no_errors	DGCR2	HGNC	ENSG00000070413				62	0	0	69	4	5.47945
HIRA	0	genome.wustl.edu	37	22	19341549	19341549	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	19341549	19341549	G	A	SNP	HIRA	ENST00000263208	human	ensembl	74_37	-1	known	missense	c.2654	p.P885L	1.000	pfam_Hira	pfam_Hira,pfam_WD40_repeat,pfam_HIRA_B_motif,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	HIRA	HGNC	ENSG00000100084				27	0	0	24	6	20
TBX1	0	genome.wustl.edu	37	22	19752591	19752591	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	19752591	19752591	C	T	SNP	TBX1	ENST00000329705	human	ensembl	74_37	+1	known	silent	c.795	p.F265	0.829	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,prints_TF_T-box,pfscan_TF_T-box	-	no_errors	TBX1	HGNC	ENSG00000184058				93	0	0	84	11	11.5789
TXNRD2	0	genome.wustl.edu	37	22	19898959	19898959	+	Silent	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	19898959	19898959	G	T	SNP	TXNRD2	ENST00000535882	human	ensembl	74_37	-1	known	silent	c.600	p.A200	0.025	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,tigrfam_Thioredoxin/glutathione_Rdtase	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_Pyr_nucl-diS_OxRdtase_dimer,pfam_Pyr_OxRdtase_NAD-bd_dom,pfam_FAD_bind_dom,pfam_GIDA-rel,superfamily_FAD/NAD-linked_Rdtase_dimer,prints_FAD_pyr_nucl-diS_OxRdtase,prints_Hg_reductase,tigrfam_Thioredoxin/glutathione_Rdtase	-	no_errors	TXNRD2	HGNC	ENSG00000184470				47	0	0	50	4	7.40741
ARVCF	0	genome.wustl.edu	37	22	19960547	19960547	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	19960547	19960547	G	A	SNP	ARVCF	ENST00000263207	human	ensembl	74_37	-1	known	silent	c.2451	p.R817	0.082	superfamily_ARM-type_fold,smart_Armadillo	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	ARVCF	HGNC	ENSG00000099889				70	0	0	47	26	35.6164
ZNF74	0	genome.wustl.edu	37	22	20760242	20760242	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	20760242	20760242	G	A	SNP	ZNF74	ENST00000356671	human	ensembl	74_37	+1	known	missense	c.919	p.G307S	0.573	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF74	HGNC	ENSG00000185252				47	0	0	32	15	31.9149
KLHL22	0	genome.wustl.edu	37	22	20800921	20800921	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	20800921	20800921	T	C	SNP	KLHL22	ENST00000328879	human	ensembl	74_37	-1	known	missense	c.1348	p.I450V	0.217	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_Kelch_2,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL22	HGNC	ENSG00000099910				120	0	0	96	9	8.57143
KLHL22	0	genome.wustl.edu	37	22	20800941	20800941	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	20800941	20800941	G	A	SNP	KLHL22	ENST00000328879	human	ensembl	74_37	-1	known	missense	c.1328	p.T443M	0.514	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_Kelch_2,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL22	HGNC	ENSG00000099910				99	0	0	70	20	22.2222
PI4KA	0	genome.wustl.edu	37	22	21156280	21156280	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	21156280	21156280	C	T	SNP	PI4KA	ENST00000255882	human	ensembl	74_37	-1	known	missense	c.1705	p.A569T	1.000	superfamily_ARM-type_fold	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PI4KA	HGNC	ENSG00000241973				72	0	0	64	16	20
CRKL	0	genome.wustl.edu	37	22	21288079	21288079	+	Silent	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	21288079	21288079	A	T	SNP	CRKL	ENST00000354336	human	ensembl	74_37	+1	known	silent	c.324	p.P108	0.996	superfamily_SH3_domain	pfam_SH3_2,pfam_SH2,pfam_SH3_domain,superfamily_SH3_domain,smart_SH2,smart_SH3_domain,pfscan_SH2,pfscan_SH3_domain,prints_SH2,prints_SH3_domain	-	no_errors	CRKL	HGNC	ENSG00000099942				133	0	0	116	9	7.2
HIC2	0	genome.wustl.edu	37	22	21800343	21800343	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	21800343	21800343	C	G	SNP	HIC2	ENST00000407464	human	ensembl	74_37	+1	known	missense	c.1159	p.P387A	0.277	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	HIC2	HGNC	ENSG00000169635				18	0	0	18	3	14.2857
CCDC116	0	genome.wustl.edu	37	22	21991211	21991211	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	21991211	21991211	T	C	SNP	CCDC116	ENST00000292779	human	ensembl	74_37	+1	known	missense	c.1694	p.M565T	0.000	NULL	NULL	-	no_errors	CCDC116	HGNC	ENSG00000161180				87	0	0	87	7	7.44681
GNAZ	0	genome.wustl.edu	37	22	23438549	23438549	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	23438549	23438549	A	G	SNP	GNAZ	ENST00000248996	human	ensembl	74_37	+1	known	missense	c.667	p.I223V	1.000	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su,prints_Gprotein_alpha_I	-	no_errors	GNAZ	HGNC	ENSG00000128266				230	0	0	224	16	6.66667
GNAZ	0	genome.wustl.edu	37	22	23465488	23465488	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	23465488	23465488	G	A	SNP	GNAZ	ENST00000248996	human	ensembl	74_37	+1	known	missense	c.938	p.R313H	1.000	pfam_Gprotein_alpha_su,superfamily_P-loop_NTPase,smart_Gprotein_alpha_su	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su,prints_Gprotein_alpha_I	-	no_errors	GNAZ	HGNC	ENSG00000128266				42	0	0	36	9	20
SMARCB1	0	genome.wustl.edu	37	22	24143232	24143232	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	24143232	24143232	G	A	SNP	SMARCB1	ENST00000263121	human	ensembl	74_37	+1	known	missense	c.464	p.R155H	1.000	pirsf_SWI_SNF_chromatin_remodel_cplx	pfam_SNF5,pirsf_SWI_SNF_chromatin_remodel_cplx	-	no_errors	SMARCB1	HGNC	ENSG00000099956				63	0	0	61	8	11.5942
CABIN1	0	genome.wustl.edu	37	22	24459471	24459471	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	24459471	24459471	T	C	SNP	CABIN1	ENST00000263119	human	ensembl	74_37	+1	known	silent	c.1746	p.P582	0.039	NULL	pfam_MEF2_binding,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	CABIN1	HGNC	ENSG00000099991				170	0	0	166	12	6.74157
SUSD2	0	genome.wustl.edu	37	22	24580778	24580778	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	24580778	24580778	T	C	SNP	SUSD2	ENST00000358321	human	ensembl	74_37	+1	known	missense	c.652	p.Y218H	0.734	NULL	pfam_AMOP,pfam_VWF_type-D,pfam_Sushi_SCR_CCP,pfam_Somatomedin_B_dom,superfamily_Sushi_SCR_CCP,superfamily_Ig_E-set,smart_AMOP,smart_VWF_type-D,smart_Sushi_SCR_CCP,pfscan_AMOP,pfscan_Somatomedin_B_dom,pfscan_Sushi_SCR_CCP	-	no_errors	SUSD2	HGNC	ENSG00000099994				26	0	0	43	4	8.51064
SUSD2	0	genome.wustl.edu	37	22	24580867	24580867	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	24580867	24580867	T	C	SNP	SUSD2	ENST00000358321	human	ensembl	74_37	+1	known	silent	c.741	p.G247	0.258	NULL	pfam_AMOP,pfam_VWF_type-D,pfam_Sushi_SCR_CCP,pfam_Somatomedin_B_dom,superfamily_Sushi_SCR_CCP,superfamily_Ig_E-set,smart_AMOP,smart_VWF_type-D,smart_Sushi_SCR_CCP,pfscan_AMOP,pfscan_Somatomedin_B_dom,pfscan_Sushi_SCR_CCP	-	no_errors	SUSD2	HGNC	ENSG00000099994				53	0	0	69	4	5.47945
POM121L9P	0	genome.wustl.edu	37	22	24658515	24658515	+	RNA	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	24658515	24658515	C	T	SNP	POM121L9P	ENST00000414583	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.993	-	-	-	no_errors	POM121L9P	HGNC	ENSG00000128262				50	0	0	35	6	14.6341
SPECC1L	0	genome.wustl.edu	37	22	24717913	24717913	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	24717913	24717913	T	C	SNP	SPECC1L	ENST00000314328	human	ensembl	74_37	+1	known	missense	c.965	p.V322A	0.999	NULL	pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_bHLH_dom,smart_CH-domain,pfscan_CH-domain	-	no_errors	SPECC1L	HGNC	ENSG00000100014				106	0	0	95	12	11.215
ADRBK2	0	genome.wustl.edu	37	22	26070497	26070497	+	Splice_Site	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	26070497	26070497	T	C	SNP	ADRBK2	ENST00000324198	human	ensembl	74_37	+1	known	splice_site	c.647+2	e8+2	1.000	-	-	-	no_errors	ADRBK2	HGNC	ENSG00000100077				70	0	0	41	3	6.81818
MYO18B	0	genome.wustl.edu	37	22	26219495	26219495	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	26219495	26219495	T	A	SNP	MYO18B	ENST00000335473	human	ensembl	74_37	+1	known	missense	c.2545	p.F849I	0.996	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,superfamily_tRNA-bd_arm,superfamily_Ribosomal_zn-bd,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO18B	HGNC	ENSG00000133454				63	0	0	78	6	7.14286
SEZ6L	0	genome.wustl.edu	37	22	26707780	26707780	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	26707780	26707780	C	A	SNP	SEZ6L	ENST00000248933	human	ensembl	74_37	+1	known	missense	c.1728	p.N576K	1.000	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	SEZ6L	HGNC	ENSG00000100095				237	2	0.83682	263	21	7.39437
HPS4	0	genome.wustl.edu	37	22	26860374	26860374	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	26860374	26860374	C	T	SNP	HPS4	ENST00000398141	human	ensembl	74_37	-1	known	missense	c.1261	p.A421T	0.000	NULL	NULL	-	no_errors	HPS4	HGNC	ENSG00000100099				77	0	0	67	14	17.284
TPST2	0	genome.wustl.edu	37	22	26937449	26937449	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	26937449	26937449	C	T	SNP	TPST2	ENST00000338754	human	ensembl	74_37	-1	known	missense	c.148	p.E50K	1.000	NULL	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	TPST2	HGNC	ENSG00000128294				31	0	0	22	2	8.33333
PITPNB	0	genome.wustl.edu	37	22	28256181	28256181	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	28256181	28256181	G	T	SNP	PITPNB	ENST00000455418	human	ensembl	74_37	-1	known	missense	c.589	p.L197M	1.000	pfam_PI_transfer	pfam_PI_transfer,prints_PI_transfer	-	no_errors	PITPNB	HGNC	ENSG00000180957				101	0	0	90	8	8.16327
PITPNB	0	genome.wustl.edu	37	22	28293787	28293787	+	Splice_Site	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	28293787	28293787	A	G	SNP	PITPNB	ENST00000455418	human	ensembl	74_37	-1	known	splice_site	c.295+2	e4+2	1.000	-	-	-	no_errors	PITPNB	HGNC	ENSG00000180957				117	1	0.847458	98	11	10.0917
HSCB	0	genome.wustl.edu	37	22	29141962	29141962	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	29141962	29141962	A	G	SNP	HSCB	ENST00000216027	human	ensembl	74_37	+1	known	silent	c.534	p.E178	0.957	pfam_HscB_oligo_C,superfamily_HscB_oligo_C,tigrfam_HscB	pfam_HscB_oligo_C,pfam_DnaJ_domain,superfamily_DnaJ_domain,superfamily_HscB_oligo_C,tigrfam_HscB	-	no_errors	HSCB	HGNC	ENSG00000100209				55	0	0	47	4	7.84314
XBP1	0	genome.wustl.edu	37	22	29193152	29193152	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	29193152	29193152	T	C	SNP	XBP1	ENST00000344347	human	ensembl	74_37	-1	known	silent	c.366	p.K122	1.000	pfam_bZIP,smart_bZIP,pfscan_bZIP	pfam_bZIP,superfamily_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	XBP1	HGNC	ENSG00000100219				89	0	0	51	4	7.27273
KREMEN1	0	genome.wustl.edu	37	22	29534823	29534823	+	Splice_Site	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	29534823	29534823	T	C	SNP	KREMEN1	ENST00000327813	human	ensembl	74_37	+1	known	splice_site	c.1174+2	e7+2	0.980	-	-	-	no_errors	KREMEN1	HGNC	ENSG00000183762				38	0	0	35	12	25.5319
EWSR1	0	genome.wustl.edu	37	22	29683072	29683072	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	29683072	29683072	A	G	SNP	EWSR1	ENST00000414183	human	ensembl	74_37	+1	known	missense	c.760	p.S254G	1.000	NULL	pfam_Znf_RanBP2,pfam_RRM_dom,smart_RRM_dom,smart_Znf_RanBP2,pfscan_Znf_RanBP2,pfscan_RRM_dom	-	no_errors	EWSR1	HGNC	ENSG00000182944				55	0	0	35	7	16.6667
AP1B1	0	genome.wustl.edu	37	22	29735105	29735105	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	29735105	29735105	G	A	SNP	AP1B1	ENST00000357586	human	ensembl	74_37	-1	known	silent	c.2037	p.F679	0.047	pirsf_AP_complex_bsu_1_2_4	pfam_Clathrin/coatomer_adapt-like_N,pfam_B-adaptin_app_sub_C,pfam_HEAT,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ARM-type_fold,superfamily_Coatomer/calthrin_app_sub_C,superfamily_Coatomer/clathrin_app_Ig-like,smart_Armadillo,smart_Clathrin_a/b/g-adaptin_app_Ig,pirsf_AP_complex_bsu_1_2_4	-	no_errors	AP1B1	HGNC	ENSG00000100280				71	0	0	86	7	7.52688
AP1B1	0	genome.wustl.edu	37	22	29736837	29736837	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	29736837	29736837	G	A	SNP	AP1B1	ENST00000357586	human	ensembl	74_37	-1	known	silent	c.1806	p.S602	0.982	pirsf_AP_complex_bsu_1_2_4	pfam_Clathrin/coatomer_adapt-like_N,pfam_B-adaptin_app_sub_C,pfam_HEAT,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ARM-type_fold,superfamily_Coatomer/calthrin_app_sub_C,superfamily_Coatomer/clathrin_app_Ig-like,smart_Armadillo,smart_Clathrin_a/b/g-adaptin_app_Ig,pirsf_AP_complex_bsu_1_2_4	-	no_errors	AP1B1	HGNC	ENSG00000100280				20	0	0	11	2	15.3846
NF2	0	genome.wustl.edu	37	22	30038225	30038225	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	30038225	30038225	G	A	SNP	NF2	ENST00000338641	human	ensembl	74_37	+1	known	missense	c.398	p.C133Y	1.000	pirsf_ERM,pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Ez/rad/moesin_like,prints_Band_41_fam	pirsf_ERM,pfam_ERM_C_dom,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM_N,superfamily_FERM_central,superfamily_Moesin_tail,smart_Band_41_domain,pfscan_FERM_domain,prints_Ez/rad/moesin_like,prints_Band_41_fam,prints_Tropomyosin	-	no_errors	NF2	HGNC	ENSG00000186575				102	0	0	81	10	10.989
ASCC2	0	genome.wustl.edu	37	22	30185132	30185132	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	30185132	30185132	C	T	SNP	ASCC2	ENST00000307790	human	ensembl	74_37	-1	known	missense	c.2144	p.R715Q	1.000	NULL	pfam_CUE,superfamily_UBA-like,smart_CUE,pfscan_CUE	-	no_errors	ASCC2	HGNC	ENSG00000100325				255	0	0	285	21	6.86275
TBC1D10A	0	genome.wustl.edu	37	22	30691001	30691001	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	30691001	30691001	G	A	SNP	TBC1D10A	ENST00000215790	human	ensembl	74_37	-1	known	missense	c.568	p.R190W	1.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D10A	HGNC	ENSG00000099992				81	0	0	61	14	18.6667
SF3A1	0	genome.wustl.edu	37	22	30730630	30730630	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	30730630	30730630	C	T	SNP	SF3A1	ENST00000215793	human	ensembl	74_37	-1	known	missense	c.2335	p.A779T	0.909	pfam_Ubiquitin_dom,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup	pfam_PRP21-like,pfam_Surp,pfam_Ubiquitin_dom,superfamily_Surp,smart_Surp,smart_Ubiquitin_dom,pfscan_Surp,pfscan_Ubiquitin_supergroup	-	no_errors	SF3A1	HGNC	ENSG00000099995				148	0	0	121	43	26.2195
SF3A1	0	genome.wustl.edu	37	22	30738209	30738209	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	30738209	30738209	T	C	SNP	SF3A1	ENST00000215793	human	ensembl	74_37	-1	known	missense	c.857	p.D286G	1.000	pfam_PRP21-like	pfam_PRP21-like,pfam_Surp,pfam_Ubiquitin_dom,superfamily_Surp,smart_Surp,smart_Ubiquitin_dom,pfscan_Surp,pfscan_Ubiquitin_supergroup	-	no_errors	SF3A1	HGNC	ENSG00000099995				100	1	0.990099	95	9	8.65385
PES1	0	genome.wustl.edu	37	22	30980655	30980655	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	30980655	30980655	T	C	SNP	PES1	ENST00000354694	human	ensembl	74_37	-1	known	missense	c.418	p.M140V	1.000	pfam_Pescadillo	pfam_Pescadillo,pfam_BRCT_dom,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	PES1	HGNC	ENSG00000100029				27	0	0	23	2	8
OSBP2	0	genome.wustl.edu	37	22	31091460	31091460	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	31091460	31091460	G	A	SNP	OSBP2	ENST00000332585	human	ensembl	74_37	+1	known	nonsense	c.564	p.W188*	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,superfamily_DNA-bd_dom_put,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBP2	HGNC	ENSG00000184792				91	0	0	104	12	10.3448
MORC2	0	genome.wustl.edu	37	22	31328629	31328629	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	31328629	31328629	C	T	SNP	MORC2	ENST00000397641	human	ensembl	74_37	-1	known	missense	c.2650	p.A884T	0.001	NULL	pfam_Znf_CW,pfam_HATPase_ATP-bd,superfamily_HATPase_ATP-bd,superfamily_Carb-bd_dom,pfscan_Znf_CW	-	no_errors	MORC2	HGNC	ENSG00000133422				44	0	0	50	4	7.40741
LIMK2	0	genome.wustl.edu	37	22	31673000	31673000	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	31673000	31673000	C	T	SNP	LIMK2	ENST00000340552	human	ensembl	74_37	+1	putative	silent	c.1935	p.D645	0.995	pfam_PP1_inhibitor,superfamily_PP1_inhibitor	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PP1_inhibitor,pfam_PDZ,pfam_Znf_LIM,superfamily_Kinase-like_dom,superfamily_PP1_inhibitor,superfamily_PDZ,smart_Znf_LIM,smart_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_LIM,pfscan_PDZ,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	LIMK2	HGNC	ENSG00000182541				61	0	0	58	9	13.4328
EIF4ENIF1	0	genome.wustl.edu	37	22	31859800	31859800	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	31859800	31859800	C	T	SNP	EIF4ENIF1	ENST00000330125	human	ensembl	74_37	-1	known	missense	c.452	p.G151D	0.997	pfam_eIF4E_transporter	pfam_eIF4E_transporter	-	no_errors	EIF4ENIF1	HGNC	ENSG00000184708				94	0	0	106	6	5.35714
DEPDC5	0	genome.wustl.edu	37	22	32241191	32241191	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	32241191	32241191	C	T	SNP	DEPDC5	ENST00000266091	human	ensembl	74_37	+1	known	missense	c.2989	p.R997C	1.000	NULL	pfam_IML1,pfam_DEP_dom,smart_DEP_dom,pfscan_DEP_dom	-	no_errors	DEPDC5	HGNC	ENSG00000100150				33	0	0	27	2	6.89655
YWHAH	0	genome.wustl.edu	37	22	32352260	32352260	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	32352260	32352260	A	G	SNP	YWHAH	ENST00000248975	human	ensembl	74_37	+1	known	silent	c.222	p.G74	0.293	pfam_14-3-3_domain,superfamily_14-3-3_domain,smart_14-3-3_domain,pirsf_14-3-3	pfam_14-3-3_domain,superfamily_14-3-3_domain,smart_14-3-3_domain,pirsf_14-3-3,prints_14-3-3	-	no_errors	YWHAH	HGNC	ENSG00000128245				85	0	0	82	6	6.81818
LARGE	0	genome.wustl.edu	37	22	33733731	33733731	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	33733731	33733731	A	G	SNP	LARGE	ENST00000354992	human	ensembl	74_37	-1	known	silent	c.1188	p.F396	0.987	NULL	pfam_Glyco_trans_8	-	no_errors	LARGE	HGNC	ENSG00000133424				51	0	0	49	5	9.25926
LARGE	0	genome.wustl.edu	37	22	34000453	34000453	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	34000453	34000453	G	A	SNP	LARGE	ENST00000354992	human	ensembl	74_37	-1	known	missense	c.583	p.R195C	0.999	pfam_Glyco_trans_8	pfam_Glyco_trans_8	-	no_errors	LARGE	HGNC	ENSG00000133424				69	0	0	71	4	5.33333
MCM5	0	genome.wustl.edu	37	22	35804510	35804510	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	35804510	35804510	G	A	SNP	MCM5	ENST00000216122	human	ensembl	74_37	+1	known	missense	c.706	p.V236I	1.000	superfamily_NA-bd_OB-fold,smart_MCM_DNA-dep_ATPase	pfam_MCM_DNA-dep_ATPase,superfamily_NA-bd_OB-fold,superfamily_P-loop_NTPase,smart_MCM_DNA-dep_ATPase,pfscan_MCM_DNA-dep_ATPase,prints_MCM5,prints_MCM_DNA-dep_ATPase	-	no_errors	MCM5	HGNC	ENSG00000100297				47	0	0	45	6	11.7647
RASD2	0	genome.wustl.edu	37	22	35947862	35947862	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	35947862	35947862	A	G	SNP	RASD2	ENST00000216127	human	ensembl	74_37	+1	known	missense	c.584	p.E195G	1.000	superfamily_P-loop_NTPase,smart_Ran_GTPase	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RASD2	HGNC	ENSG00000100302				33	0	0	41	3	6.81818
APOL6	0	genome.wustl.edu	37	22	36054697	36054697	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	36054697	36054697	A	T	SNP	APOL6	ENST00000409652	human	ensembl	74_37	+1	known	missense	c.86	p.E29V	0.000	pfam_ApoL	pfam_ApoL	-	no_errors	APOL6	HGNC	ENSG00000221963				72	0	0	68	6	8.10811
APOL6	0	genome.wustl.edu	37	22	36055239	36055239	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	36055239	36055239	G	A	SNP	APOL6	ENST00000409652	human	ensembl	74_37	+1	known	missense	c.628	p.V210I	0.000	pfam_ApoL	pfam_ApoL	-	no_errors	APOL6	HGNC	ENSG00000221963				88	0	0	82	16	16.3265
RBFOX2	0	genome.wustl.edu	37	22	36140273	36140273	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	36140273	36140273	G	A	SNP	RBFOX2	ENST00000414461	human	ensembl	74_37	-1	known	missense	c.1082	p.T361I	1.000	pirsf_RNA-bd_Fox-1	pfam_RRM_dom,pfam_Fox-1_C_dom,smart_RRM_dom,pirsf_RNA-bd_Fox-1,pfscan_RRM_dom	-	no_errors	RBFOX2	HGNC	ENSG00000100320				43	0	0	38	6	13.6364
APOL3	0	genome.wustl.edu	37	22	36537732	36537732	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	36537732	36537732	T	C	SNP	APOL3	ENST00000349314	human	ensembl	74_37	-1	known	missense	c.725	p.H242R	0.000	pfam_ApoL	pfam_ApoL	-	no_errors	APOL3	HGNC	ENSG00000128284				26	0	0	37	2	5.12821
APOL2	0	genome.wustl.edu	37	22	36624003	36624003	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	36624003	36624003	C	T	SNP	APOL2	ENST00000249066	human	ensembl	74_37	-1	known	missense	c.461	p.G154D	0.002	pfam_ApoL	pfam_ApoL	-	no_errors	APOL2	HGNC	ENSG00000128335				54	0	0	50	9	15.2542
MYH9	0	genome.wustl.edu	37	22	36684948	36684948	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	36684948	36684948	T	C	SNP	MYH9	ENST00000216181	human	ensembl	74_37	-1	known	missense	c.4595	p.Q1532R	1.000	pfam_Myosin_tail,superfamily_Prefoldin	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Regulat_G_prot_signal_superfam,superfamily_Prefoldin,superfamily_Myosin_S1_N,superfamily_STAT_TF_coiled-coil,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH9	HGNC	ENSG00000100345				62	0	0	63	8	11.2676
MYH9	0	genome.wustl.edu	37	22	36692912	36692912	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	36692912	36692912	C	T	SNP	MYH9	ENST00000216181	human	ensembl	74_37	-1	known	silent	c.3249	p.E1083	1.000	pfam_Myosin_tail	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Regulat_G_prot_signal_superfam,superfamily_Prefoldin,superfamily_Myosin_S1_N,superfamily_STAT_TF_coiled-coil,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH9	HGNC	ENSG00000100345				32	0	0	35	4	10.2564
FOXRED2	0	genome.wustl.edu	37	22	36902087	36902087	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	36902087	36902087	T	C	SNP	FOXRED2	ENST00000216187	human	ensembl	74_37	-1	known	missense	c.383	p.Y128C	1.000	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD	-	no_errors	FOXRED2	HGNC	ENSG00000100350				67	0	0	57	8	12.3077
SSTR3	0	genome.wustl.edu	37	22	37603822	37603822	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	37603822	37603822	T	C	SNP	SSTR3	ENST00000328544	human	ensembl	74_37	-1	known	silent	c.21	p.S7	0.000	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_Somatstn_rcpt_3,prints_GPCR_Rhodpsn,prints_Somatstn_rcpt,prints_Somatstn_rcpt_5,prints_Neuropept_B/W_rcpt	-	no_errors	SSTR3	HGNC	ENSG00000183473				48	0	0	34	5	12.8205
CYTH4	0	genome.wustl.edu	37	22	37695345	37695345	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	37695345	37695345	C	T	SNP	CYTH4	ENST00000248901	human	ensembl	74_37	+1	known	silent	c.432	p.L144	0.956	pfam_Sec7_dom,superfamily_Sec7_dom,smart_Sec7_dom,pfscan_Sec7_dom	pfam_Sec7_dom,pfam_Pleckstrin_homology,superfamily_Sec7_dom,smart_Sec7_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Sec7_dom	-	no_errors	CYTH4	HGNC	ENSG00000100055				56	0	0	49	6	10.9091
CYTH4	0	genome.wustl.edu	37	22	37707044	37707044	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	37707044	37707044	C	T	SNP	CYTH4	ENST00000248901	human	ensembl	74_37	+1	known	missense	c.824	p.T275M	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Sec7_dom,pfam_Pleckstrin_homology,superfamily_Sec7_dom,smart_Sec7_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Sec7_dom	-	no_errors	CYTH4	HGNC	ENSG00000100055				93	0	0	93	15	13.8889
ELFN2	0	genome.wustl.edu	37	22	37770240	37770240	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	37770240	37770240	A	G	SNP	ELFN2	ENST00000402918	human	ensembl	74_37	-1	known	silent	c.1335	p.A445	0.105	NULL	superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,pfscan_LPXTG_anchor	-	no_errors	ELFN2	HGNC	ENSG00000166897				123	0	0	116	30	20.5479
ELFN2	0	genome.wustl.edu	37	22	37771126	37771126	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	37771126	37771126	C	T	SNP	ELFN2	ENST00000402918	human	ensembl	74_37	-1	known	missense	c.449	p.C150Y	1.000	smart_Leu-rich_rpt_typical-subtyp	superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,pfscan_LPXTG_anchor	-	no_errors	ELFN2	HGNC	ENSG00000166897				94	0	0	65	18	21.6867
SH3BP1	0	genome.wustl.edu	37	22	38046210	38046210	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	38046210	38046210	C	T	SNP	SH3BP1	ENST00000442465	human	ensembl	74_37	+1	known	missense	c.1466	p.A489V	0.197	NULL	pfam_RhoGAP_dom,pfam_BAR_dom,superfamily_Rho_GTPase_activation_prot,smart_BAR_dom,smart_RhoGAP_dom,pfscan_BAR_dom,pfscan_RhoGAP_dom	-	no_errors	SH3BP1	HGNC	ENSG00000100092				30	0	0	21	5	19.2308
TRIOBP	0	genome.wustl.edu	37	22	38165151	38165151	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	38165151	38165151	G	A	SNP	TRIOBP	ENST00000406386	human	ensembl	74_37	+1	known	missense	c.6692	p.R2231H	0.587	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	TRIOBP	HGNC	ENSG00000100106				18	0	0	18	5	21.7391
BAIAP2L2	0	genome.wustl.edu	37	22	38484913	38484913	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	38484913	38484913	C	T	SNP	BAIAP2L2	ENST00000381669	human	ensembl	74_37	-1	known	silent	c.960	p.P320	0.260	superfamily_SH3_domain	pfam_IRSp53/MIM_homology_IMD,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	BAIAP2L2	HGNC	ENSG00000128298				12	0	0	6	3	33.3333
BAIAP2L2	0	genome.wustl.edu	37	22	38493074	38493074	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	38493074	38493074	G	A	SNP	BAIAP2L2	ENST00000381669	human	ensembl	74_37	-1	known	silent	c.577	p.L193	1.000	pfam_IRSp53/MIM_homology_IMD	pfam_IRSp53/MIM_homology_IMD,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	BAIAP2L2	HGNC	ENSG00000128298				28	0	0	33	3	8.33333
PLA2G6	0	genome.wustl.edu	37	22	38524328	38524328	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	38524328	38524328	A	T	SNP	PLA2G6	ENST00000332509	human	ensembl	74_37	-1	known	missense	c.1296	p.H432Q	0.000	NULL	pfam_Ankyrin_rpt,pfam_Patatin/PLipase_A2-rel,superfamily_Ankyrin_rpt-contain_dom,superfamily_Acyl_Trfase/lysoPLipase,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	PLA2G6	HGNC	ENSG00000184381				74	0	0	57	7	10.9375
CSNK1E	0	genome.wustl.edu	37	22	38689315	38689315	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	38689315	38689315	G	A	SNP	CSNK1E	ENST00000359867	human	ensembl	74_37	-1	known	missense	c.1229	p.P410L	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CSNK1E	HGNC	ENSG00000213923				148	0	0	147	8	5.16129
KCNJ4	0	genome.wustl.edu	37	22	38824086	38824086	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	38824086	38824086	G	A	SNP	KCNJ4	ENST00000303592	human	ensembl	74_37	-1	known	missense	c.52	p.R18C	1.000	pirsf_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir2.3	-	no_errors	KCNJ4	HGNC	ENSG00000168135				287	1	0.347222	273	24	8.08081
APOBEC3B	0	genome.wustl.edu	37	22	39382383	39382383	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	39382383	39382383	G	A	SNP	APOBEC3B	ENST00000333467	human	ensembl	74_37	+1	known	missense	c.535	p.A179T	0.000	pfam_APOBEC_C	pfam_APOBEC_N,pfam_APOBEC_C,superfamily_Cytidine_deaminase-like	-	no_errors	APOBEC3B	HGNC	ENSG00000179750				169	1	0.588235	123	45	26.7857
APOBEC3G	0	genome.wustl.edu	37	22	39482481	39482481	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	39482481	39482481	T	C	SNP	APOBEC3G	ENST00000407997	human	ensembl	74_37	+1	known	silent	c.933	p.T311	0.820	pfam_APOBEC_N,superfamily_Cytidine_deaminase-like	pfam_APOBEC_N,pfam_APOBEC_C,superfamily_Cytidine_deaminase-like	-	no_errors	APOBEC3G	HGNC	ENSG00000239713				209	0	0	168	12	6.66667
MIEF1	0	genome.wustl.edu	37	22	39907986	39907986	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	39907986	39907986	C	T	SNP	MIEF1	ENST00000325301	human	ensembl	74_37	+1	known	missense	c.277	p.R93W	1.000	NULL	NULL	-	no_errors	MIEF1	HGNC	ENSG00000100335				97	0	0	94	22	18.9655
MIEF1	0	genome.wustl.edu	37	22	39910325	39910325	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	39910325	39910325	G	A	SNP	MIEF1	ENST00000325301	human	ensembl	74_37	+1	known	silent	c.1389	p.T463	0.991	NULL	NULL	-	no_errors	MIEF1	HGNC	ENSG00000100335				80	0	0	68	20	22.7273
CACNA1I	0	genome.wustl.edu	37	22	40055777	40055777	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	40055777	40055777	T	C	SNP	CACNA1I	ENST00000336649	human	ensembl	74_37	+1	known	missense	c.2542	p.F848L	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_VDCCAlpha1	-	no_errors	CACNA1I	HGNC	ENSG00000100346				107	0	0	110	8	6.77966
CACNA1I	0	genome.wustl.edu	37	22	40061520	40061520	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	40061520	40061520	C	T	SNP	CACNA1I	ENST00000336649	human	ensembl	74_37	+1	known	missense	c.3887	p.P1296L	0.999	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_VDCCAlpha1	-	no_errors	CACNA1I	HGNC	ENSG00000100346				41	0	0	41	9	18
ADSL	0	genome.wustl.edu	37	22	40746002	40746002	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	40746002	40746002	A	G	SNP	ADSL	ENST00000454266	human	ensembl	74_37	+1	known	missense	c.320	p.H107R	1.000	superfamily_L-Aspartase-like,tigrfam_Pur_lyase	pfam_Fumarate_lyase_N,pfam_AdenyloSucc_lyase_C,superfamily_L-Aspartase-like,prints_Fumarate_lyase_fam,tigrfam_Pur_lyase	-	no_errors	ADSL	HGNC	ENSG00000239900				125	0	0	83	7	7.77778
MCHR1	0	genome.wustl.edu	37	22	41077411	41077411	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	41077411	41077411	T	C	SNP	MCHR1	ENST00000249016	human	ensembl	74_37	+1	known	missense	c.748	p.Y250H	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_MCH_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_MCH1_rcpt,prints_MCH_rcpt,prints_GPCR_Rhodpsn	-	no_errors	MCHR1	HGNC	ENSG00000128285				58	0	0	72	7	8.86076
ST13	0	genome.wustl.edu	37	22	41226881	41226881	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	41226881	41226881	A	T	SNP	ST13	ENST00000216218	human	ensembl	74_37	-1	known	missense	c.761	p.V254D	1.000	NULL	pfam_TPR_1,smart_TPR_repeat,smart_STI1_HS-bd,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	ST13	HGNC	ENSG00000100380				115	0	0	81	6	6.89655
RANGAP1	0	genome.wustl.edu	37	22	41645453	41645453	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	41645453	41645453	A	G	SNP	RANGAP1	ENST00000356244	human	ensembl	74_37	-1	known	silent	c.1575	p.S525	0.998	pfam_Ran_GTPase_activating_1_C,superfamily_Ran_GTPase_activating_1_C	pfam_Ran_GTPase_activating_1_C,superfamily_Ran_GTPase_activating_1_C,smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	RANGAP1	HGNC	ENSG00000100401				32	0	0	30	6	16.6667
ZC3H7B	0	genome.wustl.edu	37	22	41745258	41745258	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	41745258	41745258	C	T	SNP	ZC3H7B	ENST00000351589	human	ensembl	74_37	+1	known	missense	c.1901	p.A634V	1.000	smart_Znf_CCCH	pfam_Znf_CCCH,pfam_TPR_1,smart_TPR_repeat,smart_Znf_CCCH,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	ZC3H7B	HGNC	ENSG00000100403				87	0	0	77	6	7.22892
TOB2	0	genome.wustl.edu	37	22	41833079	41833079	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	41833079	41833079	T	C	SNP	TOB2	ENST00000327492	human	ensembl	74_37	-1	known	missense	c.271	p.S91G	1.000	pfam_Anti_prolifrtn,smart_Anti_prolifrtn,prints_Anti_prolifrtn	pfam_Anti_prolifrtn,pfam_Ataxin-2_C,smart_Anti_prolifrtn,prints_Anti_prolifrtn	-	no_errors	TOB2	HGNC	ENSG00000183864				82	0	0	72	8	10
SREBF2	0	genome.wustl.edu	37	22	42262990	42262990	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	42262990	42262990	G	A	SNP	SREBF2	ENST00000361204	human	ensembl	74_37	+1	known	missense	c.244	p.G82R	0.008	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	SREBF2	HGNC	ENSG00000198911				95	0	0	76	10	11.6279
SREBF2	0	genome.wustl.edu	37	22	42269866	42269866	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	42269866	42269866	T	C	SNP	SREBF2	ENST00000361204	human	ensembl	74_37	+1	known	missense	c.932	p.V311A	1.000	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	SREBF2	HGNC	ENSG00000198911				27	0	0	21	3	12.5
NAGA	0	genome.wustl.edu	37	22	42458976	42458976	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	42458976	42458976	G	A	SNP	NAGA	ENST00000396398	human	ensembl	74_37	-1	known	missense	c.812	p.A271V	1.000	superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_27	pfam_Glyco_hydro_GHD,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_27	-	no_errors	NAGA	HGNC	ENSG00000198951				63	0	0	48	3	5.88235
TCF20	0	genome.wustl.edu	37	22	42609857	42609857	+	Silent	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	42609857	42609857	G	T	SNP	TCF20	ENST00000359486	human	ensembl	74_37	-1	known	silent	c.1455	p.T485	0.970	NULL	smart_Znf_PHD	-	no_errors	TCF20	HGNC	ENSG00000100207				247	0	0	204	14	6.42202
NFAM1	0	genome.wustl.edu	37	22	42807623	42807623	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	42807623	42807623	T	C	SNP	NFAM1	ENST00000329021	human	ensembl	74_37	-1	known	missense	c.241	p.S81G	0.000	NULL	pfscan_Phos_immunorcpt_sig_ITAM	-	no_errors	NFAM1	HGNC	ENSG00000235568				100	0	0	82	7	7.86517
SERHL2	0	genome.wustl.edu	37	22	42969952	42969952	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	42969952	42969952	T	C	SNP	SERHL2	ENST00000327678	human	ensembl	74_37	+1	known	missense	c.836	p.F279S	0.001	NULL	pfam_AB_hydrolase_1,prints_AB_hydrolase_1	-	no_errors	SERHL2	HGNC	ENSG00000183569				73	0	0	88	9	9.27835
RRP7B	0	genome.wustl.edu	37	22	42973096	42973096	+	RNA	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	42973096	42973096	C	A	SNP	RRP7B	ENST00000357802	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RRP7B	HGNC	ENSG00000182841				44	0	0	46	5	9.80392
CYB5R3	0	genome.wustl.edu	37	22	43023656	43023656	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	43023656	43023656	T	A	SNP	CYB5R3	ENST00000361740	human	ensembl	74_37	-1	known	missense	c.601	p.I201F	0.000	NULL	pfam_OxRdtase_FAD-bd_dom,pfam_OxRdtase_FAD/NAD-bd,superfamily_Riboflavin_synthase-like_b-brl,prints_NADH-Cyt_B5_reductase,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase	-	no_errors	CYB5R3	HGNC	ENSG00000100243				90	0	0	83	6	6.74157
A4GALT	0	genome.wustl.edu	37	22	43089576	43089576	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	43089576	43089576	G	T	SNP	A4GALT	ENST00000249005	human	ensembl	74_37	-1	known	missense	c.382	p.L128M	1.000	pfam_GlycoTrfase_DXD_sugar-bd_CS	pfam_A1-4-GlycosylTfrase_dom,pfam_GlycoTrfase_DXD_sugar-bd_CS	-	no_errors	A4GALT	HGNC	ENSG00000128274				86	0	0	103	11	9.64912
PACSIN2	0	genome.wustl.edu	37	22	43286998	43286998	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	43286998	43286998	G	A	SNP	PACSIN2	ENST00000263246	human	ensembl	74_37	-1	known	silent	c.408	p.D136	0.969	NULL	pfam_FCH_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_FCH_dom,smart_SH3_domain,pfscan_FCH_dom,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	PACSIN2	HGNC	ENSG00000100266				54	0	0	44	13	22.807
MCAT	0	genome.wustl.edu	37	22	43533210	43533210	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	43533210	43533210	G	A	SNP	MCAT	ENST00000290429	human	ensembl	74_37	-1	known	silent	c.606	p.S202	0.998	pfam_Acyl_transferase,superfamily_Acyl_Trfase/lysoPLipase,superfamily_Malonyl_transacylase_ACP-bd,smart_PKS_acyl_transferase	pfam_Acyl_transferase,superfamily_Acyl_Trfase/lysoPLipase,superfamily_Malonyl_transacylase_ACP-bd,smart_PKS_acyl_transferase	-	no_errors	MCAT	HGNC	ENSG00000100294				106	0	0	96	8	7.69231
EFCAB6	0	genome.wustl.edu	37	22	43950910	43950910	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	43950910	43950910	C	T	SNP	EFCAB6	ENST00000262726	human	ensembl	74_37	-1	known	missense	c.3487	p.D1163N	0.000	NULL	pfam_EF_hand_Ca-bd_contain_6,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	EFCAB6	HGNC	ENSG00000186976				92	0	0	81	21	20.5882
EFCAB6	0	genome.wustl.edu	37	22	43950972	43950972	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	43950972	43950972	G	A	SNP	EFCAB6	ENST00000262726	human	ensembl	74_37	-1	known	missense	c.3425	p.A1142V	0.986	NULL	pfam_EF_hand_Ca-bd_contain_6,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	EFCAB6	HGNC	ENSG00000186976				60	0	0	46	8	14.8148
EFCAB6	0	genome.wustl.edu	37	22	43950974	43950974	+	Silent	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	43950974	43950974	T	G	SNP	EFCAB6	ENST00000262726	human	ensembl	74_37	-1	known	silent	c.3423	p.T1141	0.710	NULL	pfam_EF_hand_Ca-bd_contain_6,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	EFCAB6	HGNC	ENSG00000186976				57	0	0	42	10	19.2308
SAMM50	0	genome.wustl.edu	37	22	44373776	44373776	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	44373776	44373776	G	T	SNP	SAMM50	ENST00000350028	human	ensembl	74_37	+1	known	missense	c.874	p.D292Y	1.000	pfam_Bac_surfAg_D15	pfam_Bac_surfAg_D15	-	no_errors	SAMM50	HGNC	ENSG00000100347				41	0	0	31	4	11.4286
KIAA0930	0	genome.wustl.edu	37	22	45598993	45598993	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	45598993	45598993	G	A	SNP	KIAA0930	ENST00000251993	human	ensembl	74_37	-1	known	missense	c.745	p.R249C	1.000	pfam_DUF2045	pfam_DUF2045	-	no_errors	KIAA0930	HGNC	ENSG00000100364				184	0	0	139	36	20.5714
FAM118A	0	genome.wustl.edu	37	22	45728581	45728581	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	45728581	45728581	G	A	SNP	FAM118A	ENST00000216214	human	ensembl	74_37	+1	known	silent	c.927	p.Q309	0.872	NULL	superfamily_RNaseH-like_dom	-	no_errors	FAM118A	HGNC	ENSG00000100376				199	0	0	146	20	12.0482
PKDREJ	0	genome.wustl.edu	37	22	46655545	46655545	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	46655545	46655545	A	T	SNP	PKDREJ	ENST00000253255	human	ensembl	74_37	-1	known	missense	c.3675	p.D1225E	0.513	NULL	pfam_PKD1_2_channel,pfam_PKD/REJ-like,pfam_PLAT/LH2_dom,pfam_Ion_trans_dom,superfamily_Lipase_LipOase,smart_GPS_dom,smart_PLAT/LH2_dom,pfscan_PLAT/LH2_dom,pfscan_REJ-like,prints_PKD_2	-	no_errors	PKDREJ	HGNC	ENSG00000130943				123	0	0	107	10	8.54701
PKDREJ	0	genome.wustl.edu	37	22	46655740	46655740	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	46655740	46655740	C	A	SNP	PKDREJ	ENST00000253255	human	ensembl	74_37	-1	known	missense	c.3480	p.M1160I	0.026	smart_GPS_dom	pfam_PKD1_2_channel,pfam_PKD/REJ-like,pfam_PLAT/LH2_dom,pfam_Ion_trans_dom,superfamily_Lipase_LipOase,smart_GPS_dom,smart_PLAT/LH2_dom,pfscan_PLAT/LH2_dom,pfscan_REJ-like,prints_PKD_2	-	no_errors	PKDREJ	HGNC	ENSG00000130943				193	0	0	123	40	24.5399
GTSE1	0	genome.wustl.edu	37	22	46712215	46712215	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	46712215	46712215	T	C	SNP	GTSE1	ENST00000454366	human	ensembl	74_37	+1	known	silent	c.1338	p.T446	0.000	NULL	NULL	-	no_errors	GTSE1	HGNC	ENSG00000075218				185	0	0	141	12	7.84314
GTSE1	0	genome.wustl.edu	37	22	46719117	46719117	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	46719117	46719117	T	G	SNP	GTSE1	ENST00000454366	human	ensembl	74_37	+1	known	missense	c.1463	p.L488R	0.000	NULL	NULL	-	no_errors	GTSE1	HGNC	ENSG00000075218				108	0	0	86	10	10.4167
GRAMD4	0	genome.wustl.edu	37	22	47071445	47071445	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	47071445	47071445	A	G	SNP	GRAMD4	ENST00000361034	human	ensembl	74_37	+1	known	missense	c.1559	p.Q520R	1.000	pfam_GRAM,smart_GRAM	pfam_GRAM,smart_GRAM	-	no_errors	GRAMD4	HGNC	ENSG00000075240				73	0	0	70	6	7.89474
CERK	0	genome.wustl.edu	37	22	47086049	47086049	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	47086049	47086049	T	C	SNP	CERK	ENST00000216264	human	ensembl	74_37	-1	known	missense	c.1381	p.T461A	0.009	NULL	pfam_Diacylglycerol_kinase_cat_dom,superfamily_ATP-NAD_kinase_PpnK-typ,smart_Diacylglycerol_kinase_cat_dom	-	no_errors	CERK	HGNC	ENSG00000100422				105	0	0	79	15	15.9574
TBC1D22A	0	genome.wustl.edu	37	22	47189568	47189568	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	47189568	47189568	C	T	SNP	TBC1D22A	ENST00000337137	human	ensembl	74_37	+1	known	missense	c.290	p.T97M	1.000	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D22A	HGNC	ENSG00000054611				42	0	0	32	9	21.9512
TBC1D22A	0	genome.wustl.edu	37	22	47507445	47507445	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	47507445	47507445	C	T	SNP	TBC1D22A	ENST00000337137	human	ensembl	74_37	+1	known	silent	c.1371	p.C457	0.979	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D22A	HGNC	ENSG00000054611				112	0	0	80	26	24.5283
ZBED4	0	genome.wustl.edu	37	22	50280486	50280486	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	50280486	50280486	C	T	SNP	ZBED4	ENST00000216268	human	ensembl	74_37	+1	known	missense	c.3176	p.A1059V	0.000	superfamily_RNaseH-like_dom	pfam_Znf_BED_prd,pfam_HATC_dom_C,superfamily_RNaseH-like_dom,smart_Znf_BED_prd,pfscan_Znf_BED_prd	-	no_errors	ZBED4	HGNC	ENSG00000100426				64	0	0	68	6	8.10811
CRELD2	0	genome.wustl.edu	37	22	50313888	50313888	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	50313888	50313888	C	T	SNP	CRELD2	ENST00000404488	human	ensembl	74_37	+1	known	silent	c.408	p.D136	1.000	superfamily_Growth_fac_rcpt_N_dom,pfscan_EG-like_dom	pfam_DUF3456,pfam_EGF-like_Ca-bd_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_Furin_repeat,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	CRELD2	HGNC	ENSG00000184164				61	0	0	47	8	14.5455
IL17REL	0	genome.wustl.edu	37	22	50437776	50437776	+	Splice_Site	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	50437776	50437776	T	G	SNP	IL17REL	ENST00000341280	human	ensembl	74_37	-1	known	splice_site	c.547-2	e6-2	0.976	-	-	-	no_errors	IL17REL	HGNC	ENSG00000188263				63	0	0	66	22	25
MOV10L1	0	genome.wustl.edu	37	22	50599130	50599130	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	50599130	50599130	A	G	SNP	MOV10L1	ENST00000262794	human	ensembl	74_37	+1	known	missense	c.3338	p.E1113G	1.000	superfamily_P-loop_NTPase	superfamily_P-loop_NTPase,superfamily_NA-bd_OB-fold	-	no_errors	MOV10L1	HGNC	ENSG00000073146				90	0	0	68	9	11.6883
MAPK12	0	genome.wustl.edu	37	22	50693732	50693732	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	50693732	50693732	C	T	SNP	MAPK12	ENST00000215659	human	ensembl	74_37	-1	known	silent	c.918	p.L306	0.121	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_MAPK_p38	-	no_errors	MAPK12	HGNC	ENSG00000188130				99	0	0	105	6	5.40541
PPP6R2	0	genome.wustl.edu	37	22	50878428	50878428	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	50878428	50878428	C	T	SNP	PPP6R2	ENST00000216061	human	ensembl	74_37	+1	known	missense	c.2324	p.T775I	0.168	NULL	pfam_SAPS,superfamily_ARM-type_fold	-	no_errors	PPP6R2	HGNC	ENSG00000100239				46	0	0	44	5	10.2041
SBF1	0	genome.wustl.edu	37	22	50894791	50894791	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	50894791	50894791	G	A	SNP	SBF1	ENST00000380817	human	ensembl	74_37	-1	known	silent	c.4120	p.L1374	1.000	NULL	pfam_SBF2,pfam_DENN_dom,pfam_uDENN_dom,pfam_Myotubularin-like_Pase_dom,pfam_dDENN_dom,pfam_GRAM,pfam_Pleckstrin_homology,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,smart_GRAM,smart_Pleckstrin_homology,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_Pleckstrin_homology	-	no_errors	SBF1	HGNC	ENSG00000100241				24	0	0	36	2	5.26316
SBF1	0	genome.wustl.edu	37	22	50906264	50906264	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	50906264	50906264	C	T	SNP	SBF1	ENST00000380817	human	ensembl	74_37	-1	known	missense	c.230	p.R77H	1.000	pfam_uDENN_dom,smart_uDENN_dom,pfscan_uDENN_dom	pfam_SBF2,pfam_DENN_dom,pfam_uDENN_dom,pfam_Myotubularin-like_Pase_dom,pfam_dDENN_dom,pfam_GRAM,pfam_Pleckstrin_homology,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,smart_GRAM,smart_Pleckstrin_homology,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_Pleckstrin_homology	-	no_errors	SBF1	HGNC	ENSG00000100241				42	0	0	40	3	6.97674
SBF1	0	genome.wustl.edu	37	22	50906852	50906852	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	50906852	50906852	G	A	SNP	SBF1	ENST00000380817	human	ensembl	74_37	-1	known	missense	c.94	p.P32S	1.000	pfam_uDENN_dom,smart_uDENN_dom,pfscan_uDENN_dom	pfam_SBF2,pfam_DENN_dom,pfam_uDENN_dom,pfam_Myotubularin-like_Pase_dom,pfam_dDENN_dom,pfam_GRAM,pfam_Pleckstrin_homology,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,smart_GRAM,smart_Pleckstrin_homology,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_Pleckstrin_homology	-	no_errors	SBF1	HGNC	ENSG00000100241				17	0	0	17	2	10.5263
NCAPH2	0	genome.wustl.edu	37	22	50956441	50956441	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	50956441	50956441	G	A	SNP	NCAPH2	ENST00000299821	human	ensembl	74_37	+1	known	missense	c.460	p.A154T	0.978	pfam_Condensin_II_H2-like	pfam_Condensin_II_H2-like	-	no_errors	NCAPH2	HGNC	ENSG00000025770				47	0	0	51	4	7.27273
NIT2	0	genome.wustl.edu	37	3	100067663	100067663	+	Silent	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	100067663	100067663	A	C	SNP	NIT2	ENST00000394140	human	ensembl	74_37	+1	known	silent	c.522	p.V174	0.541	pfam_C-N_Hydrolase,superfamily_C-N_Hydrolase,pfscan_C-N_Hydrolase	pfam_C-N_Hydrolase,superfamily_C-N_Hydrolase,pfscan_C-N_Hydrolase	-	no_errors	NIT2	HGNC	ENSG00000114021				68	0	0	72	5	6.49351
LNP1	0	genome.wustl.edu	37	3	100148609	100148609	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	100148609	100148609	T	C	SNP	LNP1	ENST00000383693	human	ensembl	74_37	+1	known	silent	c.36	p.S12	0.998	NULL	NULL	-	no_errors	LNP1	HGNC	ENSG00000206535				459	0	0	458	28	5.76132
GPR128	0	genome.wustl.edu	37	3	100413729	100413729	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	100413729	100413729	T	C	SNP	GPR128	ENST00000273352	human	ensembl	74_37	+1	known	missense	c.2278	p.Y760H	0.998	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,smart_GPS_dom,prints_GPCR_2_secretin-like,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR128	HGNC	ENSG00000144820				119	0	0	88	9	9.27835
GPR128	0	genome.wustl.edu	37	3	100413823	100413823	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	100413823	100413823	A	T	SNP	GPR128	ENST00000273352	human	ensembl	74_37	+1	known	missense	c.2372	p.D791V	0.000	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,smart_GPS_dom,prints_GPCR_2_secretin-like,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR128	HGNC	ENSG00000144820				98	0	0	88	8	8.33333
IMPG2	0	genome.wustl.edu	37	3	100964745	100964745	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	100964745	100964745	T	C	SNP	IMPG2	ENST00000193391	human	ensembl	74_37	-1	known	missense	c.1444	p.S482G	0.901	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_EG-like_dom,pfscan_SEA_dom	-	no_errors	IMPG2	HGNC	ENSG00000081148				165	0	0	152	16	9.52381
FANCD2	0	genome.wustl.edu	37	3	10130195	10130195	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	10130195	10130195	A	G	SNP	FANCD2	ENST00000287647	human	ensembl	74_37	+1	known	missense	c.3529	p.I1177V	0.000	NULL	superfamily_ARM-type_fold	-	no_errors	FANCD2	HGNC	ENSG00000144554				91	0	0	79	5	5.95238
ZBTB11	0	genome.wustl.edu	37	3	101370373	101370373	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	101370373	101370373	C	T	SNP	ZBTB11	ENST00000312938	human	ensembl	74_37	-1	known	missense	c.2799	p.M933I	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB11	HGNC	ENSG00000066422				162	0	0	148	9	5.73248
NXPE3	0	genome.wustl.edu	37	3	101525942	101525942	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	101525942	101525942	G	A	SNP	NXPE3	ENST00000273347	human	ensembl	74_37	+1	known	nonsense	c.894	p.W298*	1.000	NULL	pfam_NXPH/NXPE,superfamily_Ig_E-set	-	no_errors	NXPE3	HGNC	ENSG00000144815				134	0	0	99	26	20.8
IRAK2	0	genome.wustl.edu	37	3	10264468	10264468	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	10264468	10264468	C	T	SNP	IRAK2	ENST00000256458	human	ensembl	74_37	+1	known	missense	c.1162	p.R388W	0.744	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Death_domain,superfamily_Kinase-like_dom,superfamily_DEATH-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	IRAK2	HGNC	ENSG00000134070				132	0	0	114	20	14.9254
ATP2B2	0	genome.wustl.edu	37	3	10413630	10413630	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	10413630	10413630	G	A	SNP	ATP2B2	ENST00000352432	human	ensembl	74_37	-1	known	missense	c.1522	p.R508C	1.000	superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_plasma,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_plasma,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP2B2	HGNC	ENSG00000157087				106	1	0.934579	118	7	5.6
ATP2B2	0	genome.wustl.edu	37	3	10491114	10491114	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	10491114	10491114	C	T	SNP	ATP2B2	ENST00000352432	human	ensembl	74_37	-1	known	silent	c.114	p.R38	1.000	NULL	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_plasma,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP2B2	HGNC	ENSG00000157087				67	0	0	55	6	9.83607
CBLB	0	genome.wustl.edu	37	3	105378039	105378039	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	105378039	105378039	T	C	SNP	CBLB	ENST00000264122	human	ensembl	74_37	-1	known	silent	c.2724	p.P908	0.995	superfamily_UBA-like	pfam_Adaptor_Cbl_N_hlx,pfam_Adaptor_Cbl_SH2-like,pfam_Adaptor_Cbl_EF_hand-like,pfam_Znf_C3HC4_RING-type,pfam_UBA/Ts_N,superfamily_Adaptor_Cbl_N_hlx,superfamily_UBA-like,smart_Znf_RING,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_RING	-	no_errors	CBLB	HGNC	ENSG00000114423				100	0	0	110	11	9.09091
BBX	0	genome.wustl.edu	37	3	107463488	107463488	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	107463488	107463488	C	T	SNP	BBX	ENST00000325805	human	ensembl	74_37	+1	known	silent	c.681	p.G227	0.528	pfam_TF_HMG_box_BBX_DUF2028	pfam_TF_HMG_box_BBX_DUF2028,pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	BBX	HGNC	ENSG00000114439				178	0	0	133	9	6.33803
KIAA1524	0	genome.wustl.edu	37	3	108300296	108300296	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	108300296	108300296	T	C	SNP	KIAA1524	ENST00000295746	human	ensembl	74_37	-1	known	missense	c.515	p.H172R	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	KIAA1524	HGNC	ENSG00000163507				64	0	0	54	6	10
DZIP3	0	genome.wustl.edu	37	3	108366943	108366943	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	108366943	108366943	T	C	SNP	DZIP3	ENST00000361582	human	ensembl	74_37	+1	known	missense	c.1946	p.L649P	0.691	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	DZIP3	HGNC	ENSG00000198919				138	0	0	104	10	8.77193
DZIP3	0	genome.wustl.edu	37	3	108392929	108392929	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	108392929	108392929	A	T	SNP	DZIP3	ENST00000361582	human	ensembl	74_37	+1	known	missense	c.2594	p.Y865F	0.998	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	DZIP3	HGNC	ENSG00000198919				158	0	0	147	10	6.36943
GUCA1C	0	genome.wustl.edu	37	3	108639352	108639352	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	108639352	108639352	C	T	SNP	GUCA1C	ENST00000261047	human	ensembl	74_37	-1	known	nonsense	c.285	p.W95*	1.000	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom,prints_Recoverin	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom,prints_Recoverin	-	no_errors	GUCA1C	HGNC	ENSG00000138472				89	0	0	73	7	8.75
CD96	0	genome.wustl.edu	37	3	111356947	111356947	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	111356947	111356947	C	T	SNP	CD96	ENST00000283285	human	ensembl	74_37	+1	known	missense	c.1457	p.A486V	0.000	NULL	smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	CD96	HGNC	ENSG00000153283				112	0	0	95	7	6.86275
SLC9C1	0	genome.wustl.edu	37	3	111921193	111921193	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	111921193	111921193	C	A	SNP	SLC9C1	ENST00000305815	human	ensembl	74_37	-1	known	missense	c.2226	p.K742N	0.002	NULL	pfam_Cation/H_exchanger,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,pfscan_cNMP-bd_dom	-	no_errors	SLC9C1	HGNC	ENSG00000172139				185	0	0	125	11	8.08824
SLC35A5	0	genome.wustl.edu	37	3	112292735	112292735	+	Splice_Site	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	112292735	112292735	G	T	SNP	SLC35A5	ENST00000492406	human	ensembl	74_37	+1	known	splice_site	c.361-1	e4-1	1.000	-	-	-	no_errors	SLC35A5	HGNC	ENSG00000138459				261	2	0.760456	194	12	5.82524
SLC35A5	0	genome.wustl.edu	37	3	112299708	112299708	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	112299708	112299708	C	T	SNP	SLC35A5	ENST00000492406	human	ensembl	74_37	+1	known	silent	c.744	p.I248	1.000	pfam_Nuc_sug_transpt,pfam_UAA,pirsf_UDP/CMP-sugar_transptr,tigrfam_UDPgal_transpt	pfam_Nuc_sug_transpt,pfam_UAA,pfam_DMT,pfam_Tpt_PEP_trans_dom,pirsf_UDP/CMP-sugar_transptr,tigrfam_UDPgal_transpt	-	no_errors	SLC35A5	HGNC	ENSG00000138459				103	0	0	82	5	5.74713
BOC	0	genome.wustl.edu	37	3	112999441	112999441	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	112999441	112999441	G	T	SNP	BOC	ENST00000273395	human	ensembl	74_37	+1	known	missense	c.2242	p.G748C	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	BOC	HGNC	ENSG00000144857				87	0	0	71	8	10.1266
HRH1	0	genome.wustl.edu	37	3	11302082	11302082	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	11302082	11302082	C	T	SNP	HRH1	ENST00000397056	human	ensembl	74_37	+1	known	silent	c.1359	p.T453	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Musac_Ach_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Histamine_H1_rcpt,prints_GPCR_Rhodpsn,prints_Musac_Ach_rcpt	-	no_errors	HRH1	HGNC	ENSG00000196639				262	0	0	218	20	8.40336
SPICE1	0	genome.wustl.edu	37	3	113169271	113169271	+	Silent	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	113169271	113169271	T	A	SNP	SPICE1	ENST00000295872	human	ensembl	74_37	-1	known	silent	c.2235	p.L745	0.628	NULL	NULL	-	no_errors	SPICE1	HGNC	ENSG00000163611				87	0	0	77	9	10.4651
KIAA2018	0	genome.wustl.edu	37	3	113375207	113375207	+	Silent	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	113375207	113375207	A	C	SNP	KIAA2018	ENST00000316407	human	ensembl	74_37	-1	known	silent	c.5322	p.A1774	0.992	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	KIAA2018	HGNC	ENSG00000176542				198	1	0.502513	192	14	6.79612
KIAA2018	0	genome.wustl.edu	37	3	113375611	113375611	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	113375611	113375611	T	A	SNP	KIAA2018	ENST00000316407	human	ensembl	74_37	-1	known	missense	c.4918	p.M1640L	0.963	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	KIAA2018	HGNC	ENSG00000176542				206	0	0	165	12	6.77966
KIAA2018	0	genome.wustl.edu	37	3	113375915	113375915	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	113375915	113375915	T	C	SNP	KIAA2018	ENST00000316407	human	ensembl	74_37	-1	known	silent	c.4614	p.L1538	0.999	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	KIAA2018	HGNC	ENSG00000176542				82	0	0	64	4	5.88235
KIAA2018	0	genome.wustl.edu	37	3	113378568	113378568	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	113378568	113378568	A	G	SNP	KIAA2018	ENST00000316407	human	ensembl	74_37	-1	known	missense	c.1961	p.V654A	0.980	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	KIAA2018	HGNC	ENSG00000176542				188	1	0.529101	146	8	5.19481
QTRTD1	0	genome.wustl.edu	37	3	113798905	113798905	+	Splice_Site	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	113798905	113798905	G	T	SNP	QTRTD1	ENST00000281273	human	ensembl	74_37	+1	known	splice_site	c.898+1	e6+1	1.000	-	-	-	no_errors	QTRTD1	HGNC	ENSG00000151576				218	0	0	155	10	6.06061
DRD3	0	genome.wustl.edu	37	3	113890743	113890743	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	113890743	113890743	C	T	SNP	DRD3	ENST00000383673	human	ensembl	74_37	-1	known	missense	c.97	p.A33T	1.000	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Dopamine_D3_rcpt,prints_GPCR_Rhodpsn,prints_Dopamine_rcpt	-	no_errors	DRD3	HGNC	ENSG00000151577				22	0	0	25	12	32.4324
LSAMP	0	genome.wustl.edu	37	3	115738431	115738431	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	115738431	115738431	C	T	SNP	LSAMP	ENST00000490035	human	ensembl	74_37	-1	known	missense	c.445	p.V149M	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LSAMP	HGNC	ENSG00000185565				84	0	0	74	6	7.5
VGLL4	0	genome.wustl.edu	37	3	11643487	11643487	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	11643487	11643487	G	T	SNP	VGLL4	ENST00000430365	human	ensembl	74_37	-1	known	missense	c.92	p.A31D	1.000	NULL	smart_TDU_repeat	-	no_errors	VGLL4	HGNC	ENSG00000144560				37	0	0	44	6	12
IGSF11	0	genome.wustl.edu	37	3	118621666	118621666	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	118621666	118621666	C	A	SNP	IGSF11	ENST00000393775	human	ensembl	74_37	-1	known	nonsense	c.997	p.E333*	0.994	NULL	pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	IGSF11	HGNC	ENSG00000144847				215	1	0.462963	166	14	7.77778
C3orf30	0	genome.wustl.edu	37	3	118867070	118867070	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	118867070	118867070	G	A	SNP	C3orf30	ENST00000295622	human	ensembl	74_37	+1	known	missense	c.1442	p.R481H	0.000	NULL	superfamily_cAMP_dep_PK_reg_su_I/II_a/b	-	no_errors	C3orf30	HGNC	ENSG00000163424				123	0	0	98	28	22.2222
ARHGAP31	0	genome.wustl.edu	37	3	119084197	119084197	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	119084197	119084197	A	G	SNP	ARHGAP31	ENST00000264245	human	ensembl	74_37	+1	known	missense	c.135	p.I45M	0.988	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP31	HGNC	ENSG00000031081				70	0	0	50	10	16.6667
ARHGAP31	0	genome.wustl.edu	37	3	119120684	119120684	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	119120684	119120684	G	C	SNP	ARHGAP31	ENST00000264245	human	ensembl	74_37	+1	known	missense	c.1085	p.G362A	1.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP31	HGNC	ENSG00000031081				48	0	0	43	4	8.51064
POGLUT1	0	genome.wustl.edu	37	3	119207829	119207829	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	119207829	119207829	A	G	SNP	POGLUT1	ENST00000295588	human	ensembl	74_37	+1	known	silent	c.792	p.K264	0.997	pfam_LipoPS_modifying,smart_LipoPS_modifying	pfam_LipoPS_modifying,smart_LipoPS_modifying	-	no_errors	POGLUT1	HGNC	ENSG00000163389				52	0	0	53	4	7.01754
ADPRH	0	genome.wustl.edu	37	3	119306347	119306347	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	119306347	119306347	A	T	SNP	ADPRH	ENST00000357003	human	ensembl	74_37	+1	known	missense	c.696	p.K232N	0.997	pfam_Ribosyl_crysJ1,superfamily_Ribosyl_crysJ1,pirsf_ADP-ribosylarg_hydro	pfam_Ribosyl_crysJ1,superfamily_Ribosyl_crysJ1,pirsf_ADP-ribosylarg_hydro	-	no_errors	ADPRH	HGNC	ENSG00000144843				66	0	0	61	4	6.15385
GPR156	0	genome.wustl.edu	37	3	119912236	119912236	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	119912236	119912236	A	G	SNP	GPR156	ENST00000315843	human	ensembl	74_37	-1	known	missense	c.269	p.V90A	1.000	pfam_GPCR_3_C,pfscan_GPCR_3_C,prints_GPCR_3_GABA_rcpt_B	pfam_GPCR_3_C,pfscan_GPCR_3_C,prints_GPCR_3_GABA_rcpt_B	-	no_errors	GPR156	HGNC	ENSG00000175697				77	0	0	75	11	12.7907
HGD	0	genome.wustl.edu	37	3	120369653	120369653	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	120369653	120369653	G	A	SNP	HGD	ENST00000283871	human	ensembl	74_37	-1	known	silent	c.402	p.H134	1.000	pfam_Homogentis_dOase,superfamily_RmlC_Cupin,tigrfam_Homogentis_dOase	pfam_Homogentis_dOase,superfamily_RmlC_Cupin,tigrfam_Homogentis_dOase	-	no_errors	HGD	HGNC	ENSG00000113924				190	1	0.52356	142	43	23.2432
HGD	0	genome.wustl.edu	37	3	120393819	120393819	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	120393819	120393819	G	A	SNP	HGD	ENST00000283871	human	ensembl	74_37	-1	known	silent	c.105	p.C35	1.000	pfam_Homogentis_dOase,superfamily_RmlC_Cupin,tigrfam_Homogentis_dOase	pfam_Homogentis_dOase,superfamily_RmlC_Cupin,tigrfam_Homogentis_dOase	-	no_errors	HGD	HGNC	ENSG00000113924				195	0	0	171	13	7.06522
GTF2E1	0	genome.wustl.edu	37	3	120500128	120500128	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	120500128	120500128	A	G	SNP	GTF2E1	ENST00000283875	human	ensembl	74_37	+1	known	silent	c.1131	p.R377	0.000	pfam_TFIIE_asu_C	pfam_TFIIEa/SarR/Rpc3_HTH_dom,pfam_TFIIE_asu_C,pfam_Znf_TFIIB,smart_TFIIE_asu	-	no_errors	GTF2E1	HGNC	ENSG00000153767				134	0	0	129	7	5.14706
POLQ	0	genome.wustl.edu	37	3	121263672	121263672	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	121263672	121263672	T	A	SNP	POLQ	ENST00000264233	human	ensembl	74_37	-1	known	missense	c.245	p.E82V	1.000	NULL	pfam_DNA-dir_DNA_pol_A_palm_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_RNaseH-like_dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_DNA-dir_DNA_pol_A_palm_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_DNA_polymerase_A	-	no_errors	POLQ	HGNC	ENSG00000051341				103	0	0	68	5	6.84932
FBXO40	0	genome.wustl.edu	37	3	121341232	121341232	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	121341232	121341232	T	A	SNP	FBXO40	ENST00000338040	human	ensembl	74_37	+1	known	missense	c.956	p.I319K	1.000	NULL	superfamily_F-box_dom,superfamily_TRAF-like,pfscan_F-box_dom,pfscan_Znf_TRAF	-	no_errors	FBXO40	HGNC	ENSG00000163833				124	0	0	120	11	8.39695
GOLGB1	0	genome.wustl.edu	37	3	121383850	121383850	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	121383850	121383850	G	A	SNP	GOLGB1	ENST00000340645	human	ensembl	74_37	-1	known	missense	c.9568	p.R3190W	0.956	NULL	superfamily_Prefoldin,superfamily_STAT_TF_coiled-coil,smart_Leu_zip_homeo	-	no_errors	GOLGB1	HGNC	ENSG00000173230				62	0	0	56	5	8.19672
SLC15A2	0	genome.wustl.edu	37	3	121634113	121634113	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	121634113	121634113	T	A	SNP	SLC15A2	ENST00000489711	human	ensembl	74_37	+1	known	missense	c.568	p.S190T	1.000	pfam_POT_fam,superfamily_MFS_dom_general_subst_transpt,tigrfam_Oligopep_transport	pfam_POT_fam,superfamily_MFS_dom_general_subst_transpt,tigrfam_Oligopep_transport	-	no_errors	SLC15A2	HGNC	ENSG00000163406				85	0	0	86	7	7.52688
CASR	0	genome.wustl.edu	37	3	121973127	121973127	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	121973127	121973127	G	A	SNP	CASR	ENST00000498619	human	ensembl	74_37	+1	known	missense	c.91	p.D31N	1.000	superfamily_Peripla_BP_I,prints_GPCR_3	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,superfamily_Growth_fac_rcpt_N_dom,pfscan_GPCR_3_C,prints_GPCR_3	-	no_errors	CASR	HGNC	ENSG00000036828				128	0	0	85	12	12.3711
CASR	0	genome.wustl.edu	37	3	122002928	122002928	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	122002928	122002928	G	T	SNP	CASR	ENST00000498619	human	ensembl	74_37	+1	known	missense	c.2157	p.K719N	1.000	pfam_GPCR_3_C,pfscan_GPCR_3_C	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,superfamily_Growth_fac_rcpt_N_dom,pfscan_GPCR_3_C,prints_GPCR_3	-	no_errors	CASR	HGNC	ENSG00000036828				49	0	0	56	4	6.66667
CCDC58	0	genome.wustl.edu	37	3	122087062	122087062	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	122087062	122087062	A	T	SNP	CCDC58	ENST00000291458	human	ensembl	74_37	-1	known	missense	c.285	p.D95E	1.000	pfam_Caffeine_induced_death_Cid2	pfam_Caffeine_induced_death_Cid2	-	no_errors	CCDC58	HGNC	ENSG00000160124				127	0	0	85	7	7.6087
WDR5B	0	genome.wustl.edu	37	3	122133953	122133953	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	122133953	122133953	G	A	SNP	WDR5B	ENST00000330689	human	ensembl	74_37	-1	known	silent	c.423	p.I141	1.000	pfam_WD40_repeat,pfam_TIF_beta_prop-like,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	pfam_WD40_repeat,pfam_TIF_beta_prop-like,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR5B	HGNC	ENSG00000196981				90	0	0	70	5	6.66667
PARP9	0	genome.wustl.edu	37	3	122259515	122259515	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	122259515	122259515	T	G	SNP	PARP9	ENST00000360356	human	ensembl	74_37	-1	known	missense	c.1674	p.E558D	1.000	NULL	pfam_Macro_dom,smart_Macro_dom,pfscan_Macro_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP9	HGNC	ENSG00000138496				125	0	0	143	13	8.33333
DTX3L	0	genome.wustl.edu	37	3	122287953	122287953	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	122287953	122287953	C	T	SNP	DTX3L	ENST00000296161	human	ensembl	74_37	+1	known	silent	c.1017	p.G339	0.000	NULL	smart_Znf_RING,pfscan_Znf_RING	-	no_errors	DTX3L	HGNC	ENSG00000163840				195	0	0	156	10	6.0241
PARP15	0	genome.wustl.edu	37	3	122334584	122334584	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	122334584	122334584	T	C	SNP	PARP15	ENST00000310366	human	ensembl	74_37	+1	known	silent	c.28	p.L10	0.000	NULL	pfam_Poly(ADP-ribose)pol_cat_dom,pfam_Macro_dom,smart_Macro_dom,pfscan_Macro_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP15	HGNC	ENSG00000173200				81	0	0	60	5	7.69231
PARP14	0	genome.wustl.edu	37	3	122418877	122418877	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	122418877	122418877	G	A	SNP	PARP14	ENST00000474629	human	ensembl	74_37	+1	known	silent	c.1476	p.T492	0.000	NULL	pfam_Macro_dom,pfam_Poly(ADP-ribose)pol_cat_dom,pfam_WWE-dom,smart_Macro_dom,pfscan_Macro_dom,pfscan_WWE-dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP14	HGNC	ENSG00000173193				60	0	0	31	5	13.8889
PARP14	0	genome.wustl.edu	37	3	122437464	122437464	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	122437464	122437464	A	G	SNP	PARP14	ENST00000474629	human	ensembl	74_37	+1	known	missense	c.4466	p.D1489G	0.098	NULL	pfam_Macro_dom,pfam_Poly(ADP-ribose)pol_cat_dom,pfam_WWE-dom,smart_Macro_dom,pfscan_Macro_dom,pfscan_WWE-dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP14	HGNC	ENSG00000173193				313	0	0	225	21	8.53659
SEMA5B	0	genome.wustl.edu	37	3	122641228	122641228	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	122641228	122641228	G	A	SNP	SEMA5B	ENST00000451055	human	ensembl	74_37	-1	known	missense	c.1501	p.R501C	1.000	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Semap_dom,pfam_Thrombospondin_1_rpt,superfamily_Semap_dom,superfamily_Thrombospondin_1_rpt,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_Thrombospondin_1_rpt,pfscan_Semap_dom,pfscan_Thrombospondin_1_rpt	-	no_errors	SEMA5B	HGNC	ENSG00000082684				14	0	0	12	4	25
PDIA5	0	genome.wustl.edu	37	3	122808124	122808124	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	122808124	122808124	T	C	SNP	PDIA5	ENST00000316218	human	ensembl	74_37	+1	known	missense	c.152	p.V51A	1.000	superfamily_Thioredoxin-like_fold	pfam_Thioredoxin_domain,pfam_AhpC/TSA,superfamily_Thioredoxin-like_fold,prints_Thioredoxin	-	no_errors	PDIA5	HGNC	ENSG00000065485				130	0	0	118	20	14.4928
PDIA5	0	genome.wustl.edu	37	3	122869205	122869205	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	122869205	122869205	G	A	SNP	PDIA5	ENST00000316218	human	ensembl	74_37	+1	known	missense	c.1267	p.A423T	1.000	pfam_Thioredoxin_domain,pfam_AhpC/TSA,superfamily_Thioredoxin-like_fold	pfam_Thioredoxin_domain,pfam_AhpC/TSA,superfamily_Thioredoxin-like_fold,prints_Thioredoxin	-	no_errors	PDIA5	HGNC	ENSG00000065485				49	0	0	68	7	9.33333
ADCY5	0	genome.wustl.edu	37	3	123018977	123018977	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	123018977	123018977	C	T	SNP	ADCY5	ENST00000462833	human	ensembl	74_37	-1	known	missense	c.2890	p.A964T	1.000	NULL	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY5	HGNC	ENSG00000173175				53	0	0	51	6	10.5263
ADCY5	0	genome.wustl.edu	37	3	123166319	123166319	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	123166319	123166319	G	A	SNP	ADCY5	ENST00000462833	human	ensembl	74_37	-1	known	silent	c.1074	p.S358	0.941	NULL	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY5	HGNC	ENSG00000173175				28	0	0	24	6	20
MYLK	0	genome.wustl.edu	37	3	123376176	123376176	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	123376176	123376176	G	T	SNP	MYLK	ENST00000360304	human	ensembl	74_37	-1	known	missense	c.4085	p.A1362D	0.997	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Prot_kinase_dom,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	MYLK	HGNC	ENSG00000065534				47	0	0	46	8	14.8148
CCDC14	0	genome.wustl.edu	37	3	123634043	123634043	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	123634043	123634043	T	C	SNP	CCDC14	ENST00000488653	human	ensembl	74_37	-1	known	silent	c.2445	p.G815	0.000	NULL	NULL	-	no_errors	CCDC14	HGNC	ENSG00000175455				79	0	0	84	8	8.69565
KALRN	0	genome.wustl.edu	37	3	124132336	124132336	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	124132336	124132336	C	T	SNP	KALRN	ENST00000360013	human	ensembl	74_37	+1	known	missense	c.2360	p.A787V	1.000	NULL	pfam_DH-domain,pfam_Prot_kinase_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Fibronectin_type3,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	KALRN	HGNC	ENSG00000160145				47	0	0	39	4	9.30233
KALRN	0	genome.wustl.edu	37	3	124379771	124379771	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	124379771	124379771	A	G	SNP	KALRN	ENST00000360013	human	ensembl	74_37	+1	known	missense	c.6215	p.D2072G	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_Prot_kinase_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Fibronectin_type3,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	KALRN	HGNC	ENSG00000160145				143	0	0	135	8	5.59441
HEG1	0	genome.wustl.edu	37	3	124731782	124731782	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	124731782	124731782	G	A	SNP	HEG1	ENST00000311127	human	ensembl	74_37	-1	known	missense	c.2641	p.L881F	0.000	NULL	pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	-	no_errors	HEG1	HGNC	ENSG00000173706				139	0	0	146	16	9.87654
SLC41A3	0	genome.wustl.edu	37	3	125741771	125741771	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	125741771	125741771	C	G	SNP	SLC41A3	ENST00000507008	human	ensembl	74_37	-1	known	missense	c.194	p.C65S	0.004	NULL	pfam_SLC41_membr_dom	-	no_errors	SLC41A3	HGNC	ENSG00000114544				121	0	0	151	11	6.79012
SLC41A3	0	genome.wustl.edu	37	3	125787043	125787043	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	125787043	125787043	C	T	SNP	SLC41A3	ENST00000315891	human	ensembl	74_37	-1	known	missense	c.20	p.R7Q	0.889	NULL	pfam_SLC41_membr_dom,superfamily_Acyl_Trfase/lysoPLipase	-	no_errors	SLC41A3	HGNC	ENSG00000114544				49	0	0	76	8	9.52381
ALDH1L1	0	genome.wustl.edu	37	3	125850318	125850318	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	125850318	125850318	G	A	SNP	ALDH1L1	ENST00000393434	human	ensembl	74_37	-1	known	missense	c.1532	p.A511V	0.997	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH,pirsf_10_FTHF_DH	pfam_Aldehyde_DH_dom,pfam_Formyl_transf_N,pfam_Formyl_trans_C,pfam_Acyl_carrier_prot-like,superfamily_Ald_DH/histidinol_DH,superfamily_Formyl_transf_N,superfamily_Formyl_transferase_C-like,superfamily_Acyl_carrier_prot-like,pirsf_10_FTHF_DH,pfscan_Acyl_carrier_prot-like	-	no_errors	ALDH1L1	HGNC	ENSG00000144908				51	0	0	49	13	20.9677
ALDH1L1	0	genome.wustl.edu	37	3	125879768	125879768	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	125879768	125879768	G	T	SNP	ALDH1L1	ENST00000393434	human	ensembl	74_37	-1	known	missense	c.55	p.L19M	0.924	pfam_Formyl_transf_N,superfamily_Formyl_transf_N,pirsf_10_FTHF_DH	pfam_Aldehyde_DH_dom,pfam_Formyl_transf_N,pfam_Formyl_trans_C,pfam_Acyl_carrier_prot-like,superfamily_Ald_DH/histidinol_DH,superfamily_Formyl_transf_N,superfamily_Formyl_transferase_C-like,superfamily_Acyl_carrier_prot-like,pirsf_10_FTHF_DH,pfscan_Acyl_carrier_prot-like	-	no_errors	ALDH1L1	HGNC	ENSG00000144908				84	0	0	94	6	6
CCDC37	0	genome.wustl.edu	37	3	126138999	126138999	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	126138999	126138999	C	T	SNP	CCDC37	ENST00000393425	human	ensembl	74_37	+1	known	missense	c.1012	p.R338W	0.001	NULL	superfamily_SuperAg_toxin_C	-	no_errors	CCDC37	HGNC	ENSG00000163885				41	0	0	32	4	11.1111
UROC1	0	genome.wustl.edu	37	3	126224593	126224593	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	126224593	126224593	G	T	SNP	UROC1	ENST00000290868	human	ensembl	74_37	-1	known	missense	c.764	p.A255D	1.000	pfam_Urocanase,superfamily_Urocanase,pirsf_Urocanase	pfam_Urocanase,superfamily_Urocanase,pirsf_Urocanase	-	no_errors	UROC1	HGNC	ENSG00000159650				36	0	0	44	9	16.9811
CNTN6	0	genome.wustl.edu	37	3	1262436	1262436	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	1262436	1262436	T	A	SNP	CNTN6	ENST00000350110	human	ensembl	74_37	+1	known	missense	c.121	p.L41I	0.002	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CNTN6	HGNC	ENSG00000134115				149	0	0	124	16	11.4286
RAF1	0	genome.wustl.edu	37	3	12632428	12632428	+	Silent	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	12632428	12632428	T	G	SNP	RAF1	ENST00000442415	human	ensembl	74_37	-1	known	silent	c.1299	p.T433	0.226	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Raf-like_ras-bd,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Kinase-like_dom,smart_Raf-like_ras-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Raf-like_ras-bd,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_DAG/PE-bd	-	no_errors	RAF1	HGNC	ENSG00000132155				142	0	0	160	12	6.97674
RAF1	0	genome.wustl.edu	37	3	12641249	12641249	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	12641249	12641249	A	G	SNP	RAF1	ENST00000442415	human	ensembl	74_37	-1	known	missense	c.1109	p.M370T	1.000	superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Raf-like_ras-bd,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Kinase-like_dom,smart_Raf-like_ras-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Raf-like_ras-bd,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_DAG/PE-bd	-	no_errors	RAF1	HGNC	ENSG00000132155				93	0	0	104	11	9.56522
PLXNA1	0	genome.wustl.edu	37	3	126707909	126707909	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	126707909	126707909	A	G	SNP	PLXNA1	ENST00000393409	human	ensembl	74_37	+1	known	missense	c.473	p.H158R	1.000	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA1	HGNC	ENSG00000114554				34	0	0	26	2	7.14286
PLXNA1	0	genome.wustl.edu	37	3	126735848	126735848	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	126735848	126735848	C	T	SNP	PLXNA1	ENST00000393409	human	ensembl	74_37	+1	known	missense	c.3244	p.R1082W	0.997	pfam_IPT,superfamily_Ig_E-set,smart_IPT	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA1	HGNC	ENSG00000114554				35	0	0	61	4	6.15385
PLXNA1	0	genome.wustl.edu	37	3	126749143	126749143	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	126749143	126749143	C	T	SNP	PLXNA1	ENST00000393409	human	ensembl	74_37	+1	known	missense	c.5119	p.R1707W	1.000	pfam_Plexin_cytoplasmic_RasGAP_dom,superfamily_Rho_GTPase_activation_prot	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA1	HGNC	ENSG00000114554				103	0	0	79	21	21
ABTB1	0	genome.wustl.edu	37	3	127395250	127395250	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	127395250	127395250	T	C	SNP	ABTB1	ENST00000232744	human	ensembl	74_37	+1	known	silent	c.456	p.S152	0.004	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_BTB_POZ,pfam_Ankyrin_rpt,superfamily_BTB/POZ_fold,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_BTB/POZ-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_BTB/POZ-like	-	no_errors	ABTB1	HGNC	ENSG00000114626				58	0	0	72	21	22.5806
RUVBL1	0	genome.wustl.edu	37	3	127831737	127831737	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	127831737	127831737	C	T	SNP	RUVBL1	ENST00000322623	human	ensembl	74_37	-1	known	missense	c.355	p.A119T	1.000	pfam_TIP49_C,superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_TIP49_C,pfam_DNA_helicase_Holl-junc_RuvB_N,pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,superfamily_NA-bd_OB-fold,smart_AAA+_ATPase	-	no_errors	RUVBL1	HGNC	ENSG00000175792				118	0	0	97	6	5.82524
TMEM40	0	genome.wustl.edu	37	3	12783956	12783956	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	12783956	12783956	C	A	SNP	TMEM40	ENST00000431022	human	ensembl	74_37	-1	known	nonsense	c.400	p.G134*	0.336	NULL	NULL	-	no_errors	TMEM40	HGNC	ENSG00000088726				158	0	0	153	12	7.27273
EEFSEC	0	genome.wustl.edu	37	3	128077166	128077166	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	128077166	128077166	T	C	SNP	EEFSEC	ENST00000254730	human	ensembl	74_37	+1	known	missense	c.1550	p.I517T	0.992	NULL	pfam_EF_GTP-bd_dom,pfam_Transl_elong_EFTu/EF1A_2,superfamily_P-loop_NTPase,superfamily_Transl_B-barrel,superfamily_Transl_elong_EF1A/Init_IF2_C,prints_EF_GTP-bd_dom	-	no_errors	EEFSEC	HGNC	ENSG00000132394				45	0	0	53	8	13.1148
CAND2	0	genome.wustl.edu	37	3	12858333	12858333	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	12858333	12858333	T	C	SNP	CAND2	ENST00000456430	human	ensembl	74_37	+1	known	silent	c.1902	p.L634	0.999	superfamily_ARM-type_fold	pfam_TATA-bd_TIP120,pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	CAND2	HGNC	ENSG00000144712				111	0	0	107	10	8.54701
LOC653712	0	genome.wustl.edu	37	3	128584124	128584124	+	Splice_Site	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	128584124	128584124	C	T	SNP	LOC653712	ENST00000480931	human	ensembl	74_37	-1	known	splice_site	c.NULL	NULL	1.000	-	-	-	no_errors	RP11-723O4.2	Clone_based_vega_gene	ENSG00000231305				37	0	0	36	4	10
KIAA1257	0	genome.wustl.edu	37	3	128707683	128707683	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	128707683	128707683	C	T	SNP	KIAA1257	ENST00000265068	human	ensembl	74_37	-1	known	missense	c.341	p.R114H	0.002	NULL	NULL	-	no_errors	KIAA1257	HGNC	ENSG00000114656				64	0	0	52	9	14.7541
KIAA1257	0	genome.wustl.edu	37	3	128711957	128711957	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	128711957	128711957	G	T	SNP	KIAA1257	ENST00000265068	human	ensembl	74_37	-1	known	missense	c.191	p.T64N	0.000	NULL	NULL	-	no_errors	KIAA1257	HGNC	ENSG00000114656				120	1	0.826446	127	12	8.63309
GP9	0	genome.wustl.edu	37	3	128780907	128780907	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	128780907	128780907	C	T	SNP	GP9	ENST00000307395	human	ensembl	74_37	+1	known	silent	c.325	p.L109	0.000	smart_Cys-rich_flank_reg_C	pfam_LRR-contain_N,smart_LRR-contain_N,smart_Cys-rich_flank_reg_C	-	no_errors	GP9	HGNC	ENSG00000169704				20	0	0	15	4	21.0526
RAB43	0	genome.wustl.edu	37	3	128813922	128813922	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	128813922	128813922	C	T	SNP	RAB43	ENST00000315150	human	ensembl	74_37	-1	known	missense	c.295	p.D99N	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB43	HGNC	ENSG00000172780				47	0	0	48	4	7.69231
EFCAB12	0	genome.wustl.edu	37	3	129137111	129137111	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	129137111	129137111	C	T	SNP	EFCAB12	ENST00000326085	human	ensembl	74_37	-1	known	missense	c.667	p.A223T	0.000	pfscan_EF_hand_dom	pfscan_EF_hand_dom	-	no_errors	EFCAB12	HGNC	ENSG00000172771				36	0	0	46	3	6.12245
IFT122	0	genome.wustl.edu	37	3	129185775	129185775	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	129185775	129185775	C	T	SNP	IFT122	ENST00000296266	human	ensembl	74_37	+1	known	silent	c.759	p.A253	0.851	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	IFT122	HGNC	ENSG00000163913				117	0	0	98	15	13.2743
IFT122	0	genome.wustl.edu	37	3	129195221	129195221	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	129195221	129195221	T	C	SNP	IFT122	ENST00000296266	human	ensembl	74_37	+1	known	missense	c.1033	p.Y345H	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	IFT122	HGNC	ENSG00000163913				82	0	0	92	8	8
IFT122	0	genome.wustl.edu	37	3	129195527	129195527	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	129195527	129195527	A	G	SNP	IFT122	ENST00000296266	human	ensembl	74_37	+1	known	missense	c.1183	p.T395A	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	IFT122	HGNC	ENSG00000163913				104	1	0.952381	108	6	5.26316
IFT122	0	genome.wustl.edu	37	3	129226602	129226602	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	129226602	129226602	C	G	SNP	IFT122	ENST00000296266	human	ensembl	74_37	+1	known	missense	c.3036	p.H1012Q	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	IFT122	HGNC	ENSG00000163913				73	0	0	90	9	9.09091
RHO	0	genome.wustl.edu	37	3	129249874	129249874	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	129249874	129249874	G	A	SNP	RHO	ENST00000296271	human	ensembl	74_37	+1	known	missense	c.517	p.A173T	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_Rhodopsin_N,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Rhodopsin,prints_GPCR_Rhodpsn,prints_Opsin	-	no_errors	RHO	HGNC	ENSG00000163914				43	0	0	54	6	10
PLXND1	0	genome.wustl.edu	37	3	129279264	129279264	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	129279264	129279264	T	C	SNP	PLXND1	ENST00000324093	human	ensembl	74_37	-1	known	missense	c.5042	p.D1681G	0.997	pfam_Plexin_cytoplasmic_RasGAP_dom,superfamily_Rho_GTPase_activation_prot	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT,pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXND1	HGNC	ENSG00000004399				15	0	0	22	3	12
IQSEC1	0	genome.wustl.edu	37	3	12944311	12944311	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	12944311	12944311	G	A	SNP	IQSEC1	ENST00000273221	human	ensembl	74_37	-1	known	missense	c.2809	p.R937C	1.000	NULL	pfam_Sec7_dom,superfamily_Sec7_dom,smart_Sec7_dom,smart_Pleckstrin_homology,pfscan_IQ_motif_EF-hand-BS,pfscan_Sec7_dom	-	no_errors	IQSEC1	HGNC	ENSG00000144711				29	0	0	28	4	12.5
TRH	0	genome.wustl.edu	37	3	129695921	129695921	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	129695921	129695921	T	C	SNP	TRH	ENST00000302649	human	ensembl	74_37	+1	known	silent	c.591	p.C197	0.552	pfam_TRH,pirsf_TRH	pfam_TRH,pirsf_TRH	-	no_errors	TRH	HGNC	ENSG00000170893				42	0	0	46	4	8
IQSEC1	0	genome.wustl.edu	37	3	12977116	12977116	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	12977116	12977116	T	C	SNP	IQSEC1	ENST00000273221	human	ensembl	74_37	-1	known	missense	c.1442	p.D481G	1.000	NULL	pfam_Sec7_dom,superfamily_Sec7_dom,smart_Sec7_dom,smart_Pleckstrin_homology,pfscan_IQ_motif_EF-hand-BS,pfscan_Sec7_dom	-	no_errors	IQSEC1	HGNC	ENSG00000144711				92	0	0	95	10	9.52381
IQSEC1	0	genome.wustl.edu	37	3	12978142	12978142	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	12978142	12978142	C	T	SNP	IQSEC1	ENST00000273221	human	ensembl	74_37	-1	known	missense	c.416	p.R139H	1.000	pfscan_IQ_motif_EF-hand-BS	pfam_Sec7_dom,superfamily_Sec7_dom,smart_Sec7_dom,smart_Pleckstrin_homology,pfscan_IQ_motif_EF-hand-BS,pfscan_Sec7_dom	-	no_errors	IQSEC1	HGNC	ENSG00000144711				24	0	0	18	2	10
ALG1L2	0	genome.wustl.edu	37	3	129816094	129816094	+	Splice_Site	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	129816094	129816094	G	A	SNP	ALG1L2	ENST00000507643	human	ensembl	74_37	+1	known	splice_site	c.NULL	NULL	1.000	-	-	-	no_errors	ALG1L2	HGNC	ENSG00000251287				37	0	0	40	6	13.0435
FAM86HP	0	genome.wustl.edu	37	3	129823065	129823065	+	RNA	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	129823065	129823065	G	A	SNP	FAM86HP	ENST00000500074	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.969	-	-	-	no_errors	FAM86HP	HGNC	ENSG00000253540				32	0	0	32	7	17.9487
COL6A5	0	genome.wustl.edu	37	3	130159354	130159354	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	130159354	130159354	A	T	SNP	COL6A5	ENST00000265379	human	ensembl	74_37	+1	known	missense	c.6172	p.I2058F	0.550	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A5	HGNC	ENSG00000172752				104	0	0	77	13	14.4444
COL6A6	0	genome.wustl.edu	37	3	130285978	130285978	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	130285978	130285978	T	C	SNP	COL6A6	ENST00000358511	human	ensembl	74_37	+1	known	missense	c.1715	p.I572T	0.993	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A6	HGNC	ENSG00000206384				172	0	0	174	11	5.94595
COL6A6	0	genome.wustl.edu	37	3	130300604	130300604	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	130300604	130300604	A	C	SNP	COL6A6	ENST00000358511	human	ensembl	74_37	+1	known	missense	c.3747	p.K1249N	0.038	smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A6	HGNC	ENSG00000206384				153	0	0	107	12	10.084
COL6A6	0	genome.wustl.edu	37	3	130311908	130311908	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	130311908	130311908	G	T	SNP	COL6A6	ENST00000358511	human	ensembl	74_37	+1	known	nonsense	c.4375	p.E1459*	1.000	NULL	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A6	HGNC	ENSG00000206384				347	1	0.287356	238	22	8.46154
COL6A6	0	genome.wustl.edu	37	3	130381128	130381128	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	130381128	130381128	A	G	SNP	COL6A6	ENST00000358511	human	ensembl	74_37	+1	known	missense	c.6478	p.K2160E	0.036	pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A6	HGNC	ENSG00000206384				279	0	0	188	19	9.17874
PIK3R4	0	genome.wustl.edu	37	3	130405096	130405096	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	130405096	130405096	G	A	SNP	PIK3R4	ENST00000356763	human	ensembl	74_37	-1	known	missense	c.3434	p.T1145I	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_Prot_kinase_dom,pfam_WD40_repeat,pfam_HEAT,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_WD40_repeat,pfscan_HEAT_type_2,pfscan_Prot_kinase_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	PIK3R4	HGNC	ENSG00000196455				109	0	0	75	7	8.53659
PIK3R4	0	genome.wustl.edu	37	3	130447430	130447430	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	130447430	130447430	T	C	SNP	PIK3R4	ENST00000356763	human	ensembl	74_37	-1	known	missense	c.1684	p.T562A	1.000	superfamily_ARM-type_fold	pfam_Prot_kinase_dom,pfam_WD40_repeat,pfam_HEAT,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_WD40_repeat,pfscan_HEAT_type_2,pfscan_Prot_kinase_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	PIK3R4	HGNC	ENSG00000196455				93	0	0	68	7	9.33333
ATP2C1	0	genome.wustl.edu	37	3	130682820	130682820	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	130682820	130682820	C	T	SNP	ATP2C1	ENST00000393221	human	ensembl	74_37	+1	known	missense	c.1007	p.A336V	1.000	pfam_ATPase_P-typ_transduc_dom_A,tigrfam_ATPase_P-typ_Ca-transp_PMR1,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_PMR1,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP2C1	HGNC	ENSG00000017260				122	0	0	100	22	18.0328
ASTE1	0	genome.wustl.edu	37	3	130743433	130743433	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	130743433	130743433	G	A	SNP	ASTE1	ENST00000264992	human	ensembl	74_37	-1	known	missense	c.718	p.R240C	0.000	NULL	pfam_XPG_DNA_repair_N	-	no_errors	ASTE1	HGNC	ENSG00000034533				78	0	0	57	14	19.7183
ACPP	0	genome.wustl.edu	37	3	132051108	132051108	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	132051108	132051108	C	T	SNP	ACPP	ENST00000351273	human	ensembl	74_37	+1	known	missense	c.376	p.P126S	1.000	pfam_His_Pase_superF_clade-2	pfam_His_Pase_superF_clade-2	-	no_errors	ACPP	HGNC	ENSG00000014257				159	0	0	155	13	7.7381
ACPP	0	genome.wustl.edu	37	3	132068825	132068825	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	132068825	132068825	A	G	SNP	ACPP	ENST00000351273	human	ensembl	74_37	+1	known	silent	c.843	p.K281	0.004	pfam_His_Pase_superF_clade-2	pfam_His_Pase_superF_clade-2	-	no_errors	ACPP	HGNC	ENSG00000014257				76	0	0	48	6	11.1111
DNAJC13	0	genome.wustl.edu	37	3	132202234	132202234	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	132202234	132202234	A	G	SNP	DNAJC13	ENST00000260818	human	ensembl	74_37	+1	known	missense	c.2995	p.T999A	1.000	superfamily_ARM-type_fold,superfamily_GYF	pfam_DnaJ_domain,superfamily_ARM-type_fold,superfamily_GYF,smart_DnaJ_domain,pfscan_DnaJ_domain	-	no_errors	DNAJC13	HGNC	ENSG00000138246				61	0	0	56	4	6.66667
DNAJC13	0	genome.wustl.edu	37	3	132207831	132207831	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	132207831	132207831	A	G	SNP	DNAJC13	ENST00000260818	human	ensembl	74_37	+1	known	missense	c.3434	p.Y1145C	1.000	superfamily_ARM-type_fold	pfam_DnaJ_domain,superfamily_ARM-type_fold,superfamily_GYF,smart_DnaJ_domain,pfscan_DnaJ_domain	-	no_errors	DNAJC13	HGNC	ENSG00000138246				93	0	0	65	11	14.4737
DNAJC13	0	genome.wustl.edu	37	3	132257035	132257035	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	132257035	132257035	G	A	SNP	DNAJC13	ENST00000260818	human	ensembl	74_37	+1	known	missense	c.6641	p.G2214D	1.000	NULL	pfam_DnaJ_domain,superfamily_ARM-type_fold,superfamily_GYF,smart_DnaJ_domain,pfscan_DnaJ_domain	-	no_errors	DNAJC13	HGNC	ENSG00000138246				87	0	0	55	14	20.2899
ACKR4	0	genome.wustl.edu	37	3	132319590	132319590	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	132319590	132319590	G	A	SNP	ACKR4	ENST00000249887	human	ensembl	74_37	+1	known	missense	c.349	p.A117T	0.990	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Chemokine_rcpt,prints_Chemokine_CXCR4	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Chemokine_CCRL1,prints_GPCR_Rhodpsn,prints_Chemokine_rcpt,prints_Chemokine_CXCR4	-	no_errors	ACKR4	HGNC	ENSG00000129048				141	0	0	126	9	6.66667
NPHP3	0	genome.wustl.edu	37	3	132402349	132402349	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	132402349	132402349	A	G	SNP	NPHP3	ENST00000337331	human	ensembl	74_37	-1	known	missense	c.3590	p.V1197A	1.000	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR_1,pfam_TPR-3,superfamily_P-loop_NTPase,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	NPHP3	HGNC	ENSG00000113971				70	0	0	46	6	11.5385
NPHP3	0	genome.wustl.edu	37	3	132409456	132409456	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	132409456	132409456	G	A	SNP	NPHP3	ENST00000337331	human	ensembl	74_37	-1	known	missense	c.2609	p.P870L	0.989	NULL	pfam_TPR_1,pfam_TPR-3,superfamily_P-loop_NTPase,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	NPHP3	HGNC	ENSG00000113971				124	0	0	111	7	5.9322
NPHP3	0	genome.wustl.edu	37	3	132432040	132432040	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	132432040	132432040	G	A	SNP	NPHP3	ENST00000337331	human	ensembl	74_37	-1	known	missense	c.1048	p.L350F	0.634	superfamily_P-loop_NTPase	pfam_TPR_1,pfam_TPR-3,superfamily_P-loop_NTPase,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	NPHP3	HGNC	ENSG00000113971				59	0	0	42	3	6.66667
TOPBP1	0	genome.wustl.edu	37	3	133341983	133341983	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	133341983	133341983	T	C	SNP	TOPBP1	ENST00000260810	human	ensembl	74_37	-1	known	missense	c.3130	p.K1044E	0.002	NULL	pfam_BRCT_dom,superfamily_BRCT_dom,superfamily_Secretoglobin,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	TOPBP1	HGNC	ENSG00000163781				63	0	0	39	4	9.30233
TF	0	genome.wustl.edu	37	3	133494403	133494403	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	133494403	133494403	C	A	SNP	TF	ENST00000402696	human	ensembl	74_37	+1	known	missense	c.1814	p.A605D	1.000	pfam_Transferrin_fam,smart_Transferrin_fam,pirsf_Transferrin	pfam_Transferrin_fam,smart_Transferrin_fam,pirsf_Transferrin,prints_Transferrin_fam	-	no_errors	TF	HGNC	ENSG00000091513				170	0	0	154	15	8.87574
SRPRB	0	genome.wustl.edu	37	3	133538536	133538536	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	133538536	133538536	G	A	SNP	SRPRB	ENST00000466490	human	ensembl	74_37	+1	known	missense	c.742	p.A248T	1.000	pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase	pfam_SRP_receptor_beta_su,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,pfam_Gtr1_RagA,superfamily_P-loop_NTPase	-	no_errors	SRPRB	HGNC	ENSG00000144867				46	0	0	44	9	16.9811
NUP210	0	genome.wustl.edu	37	3	13363106	13363106	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	13363106	13363106	C	T	SNP	NUP210	ENST00000254508	human	ensembl	74_37	-1	known	silent	c.5145	p.P1715	0.001	NULL	pfam_Big_2,superfamily_Invasin/intimin_cell_adhesion,superfamily_Cadherin-like,smart_Big_2	-	no_errors	NUP210	HGNC	ENSG00000132182				118	0	0	119	13	9.84848
NUP210	0	genome.wustl.edu	37	3	13370369	13370369	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	13370369	13370369	C	T	SNP	NUP210	ENST00000254508	human	ensembl	74_37	-1	known	silent	c.4188	p.V1396	0.994	NULL	pfam_Big_2,superfamily_Invasin/intimin_cell_adhesion,superfamily_Cadherin-like,smart_Big_2	-	no_errors	NUP210	HGNC	ENSG00000132182				79	0	0	63	9	12.5
AMOTL2	0	genome.wustl.edu	37	3	134089923	134089923	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	134089923	134089923	G	A	SNP	AMOTL2	ENST00000249883	human	ensembl	74_37	-1	known	missense	c.353	p.A118V	0.998	NULL	pfam_Angiomotin_C,prints_Angiomotin	-	no_errors	AMOTL2	HGNC	ENSG00000114019				16	0	0	13	3	18.75
CEP63	0	genome.wustl.edu	37	3	134277113	134277113	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	134277113	134277113	A	T	SNP	CEP63	ENST00000337090	human	ensembl	74_37	+1	known	missense	c.1597	p.M533L	0.440	NULL	NULL	-	no_errors	CEP63	HGNC	ENSG00000182923				154	0	0	110	14	11.2903
KY	0	genome.wustl.edu	37	3	134323034	134323034	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	134323034	134323034	G	A	SNP	KY	ENST00000423778	human	ensembl	74_37	-1	known	missense	c.1373	p.S458L	1.000	NULL	pfam_Transglutaminase-like,smart_Transglutaminase-like	-	no_errors	KY	HGNC	ENSG00000174611				20	0	0	18	3	14.2857
KY	0	genome.wustl.edu	37	3	134338077	134338077	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	134338077	134338077	T	C	SNP	KY	ENST00000423778	human	ensembl	74_37	-1	known	missense	c.623	p.D208G	1.000	pfam_Transglutaminase-like	pfam_Transglutaminase-like,smart_Transglutaminase-like	-	no_errors	KY	HGNC	ENSG00000174611				107	0	0	122	10	7.57576
PPP2R3A	0	genome.wustl.edu	37	3	135720924	135720924	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	135720924	135720924	C	T	SNP	PPP2R3A	ENST00000264977	human	ensembl	74_37	+1	known	missense	c.584	p.T195M	0.000	NULL	pfscan_EF_hand_dom	-	no_errors	PPP2R3A	HGNC	ENSG00000073711				101	0	0	71	11	13.4146
PPP2R3A	0	genome.wustl.edu	37	3	135721357	135721357	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	135721357	135721357	G	A	SNP	PPP2R3A	ENST00000264977	human	ensembl	74_37	+1	known	silent	c.1017	p.Q339	1.000	NULL	pfscan_EF_hand_dom	-	no_errors	PPP2R3A	HGNC	ENSG00000073711				138	0	0	101	12	10.6195
MSL2	0	genome.wustl.edu	37	3	135870699	135870699	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	135870699	135870699	G	A	SNP	MSL2	ENST00000309993	human	ensembl	74_37	-1	known	nonsense	c.1024	p.R342*	1.000	NULL	pfscan_Znf_RING	-	no_errors	MSL2	HGNC	ENSG00000174579				99	0	0	74	22	22.9167
STAG1	0	genome.wustl.edu	37	3	136152490	136152490	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	136152490	136152490	G	A	SNP	STAG1	ENST00000383202	human	ensembl	74_37	-1	known	missense	c.1558	p.R520C	1.000	superfamily_ARM-type_fold	pfam_STAG,superfamily_ARM-type_fold	-	no_errors	STAG1	HGNC	ENSG00000118007				70	0	0	66	5	7.04225
STAG1	0	genome.wustl.edu	37	3	136323179	136323179	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	136323179	136323179	A	G	SNP	STAG1	ENST00000383202	human	ensembl	74_37	-1	known	missense	c.269	p.V90A	1.000	NULL	pfam_STAG,superfamily_ARM-type_fold	-	no_errors	STAG1	HGNC	ENSG00000118007				181	0	0	147	14	8.69565
NCK1	0	genome.wustl.edu	37	3	136665098	136665098	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	136665098	136665098	A	G	SNP	NCK1	ENST00000288986	human	ensembl	74_37	+1	known	silent	c.900	p.G300	0.101	pfam_SH2,smart_SH2,pirsf_Cytoplasmic_NCK,pfscan_SH2	pfam_SH3_domain,pfam_SH3_2,pfam_SH2,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,pirsf_Cytoplasmic_NCK,pfscan_SH2,pfscan_SH3_domain,prints_SH2,prints_SH3_domain	-	no_errors	NCK1	HGNC	ENSG00000158092				135	0	0	136	11	7.48299
IL20RB	0	genome.wustl.edu	37	3	136699431	136699431	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	136699431	136699431	A	G	SNP	IL20RB	ENST00000329582	human	ensembl	74_37	+1	known	missense	c.212	p.Q71R	1.000	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL20RB	HGNC	ENSG00000174564				154	0	0	139	9	6.08108
CNTN6	0	genome.wustl.edu	37	3	1369239	1369239	+	Silent	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	1369239	1369239	A	T	SNP	CNTN6	ENST00000350110	human	ensembl	74_37	+1	known	silent	c.1182	p.I394	0.003	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CNTN6	HGNC	ENSG00000134115				58	0	0	44	10	18.5185
CLDN18	0	genome.wustl.edu	37	3	137749876	137749876	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	137749876	137749876	G	A	SNP	CLDN18	ENST00000183605	human	ensembl	74_37	+1	known	missense	c.679	p.A227T	0.918	prints_Claudin18	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin18,prints_Claudin	-	no_errors	CLDN18	HGNC	ENSG00000066405				160	0	0	140	12	7.89474
ARMC8	0	genome.wustl.edu	37	3	137991841	137991841	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	137991841	137991841	A	G	SNP	ARMC8	ENST00000469044	human	ensembl	74_37	+1	known	silent	c.1512	p.K504	1.000	superfamily_ARM-type_fold,smart_Armadillo	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	ARMC8	HGNC	ENSG00000114098				46	0	0	47	5	9.61538
ESYT3	0	genome.wustl.edu	37	3	138183274	138183274	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	138183274	138183274	G	A	SNP	ESYT3	ENST00000389567	human	ensembl	74_37	+1	known	missense	c.1003	p.A335T	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,prints_C2_dom,pfscan_C2_dom	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,prints_C2_dom,pfscan_C2_dom	-	no_errors	ESYT3	HGNC	ENSG00000158220				54	0	0	51	8	13.5593
ESYT3	0	genome.wustl.edu	37	3	138191352	138191352	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	138191352	138191352	C	T	SNP	ESYT3	ENST00000389567	human	ensembl	74_37	+1	known	missense	c.1888	p.P630S	0.001	NULL	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,prints_C2_dom,pfscan_C2_dom	-	no_errors	ESYT3	HGNC	ENSG00000158220				85	0	0	115	8	6.50407
PIK3CB	0	genome.wustl.edu	37	3	138383975	138383975	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	138383975	138383975	T	C	SNP	PIK3CB	ENST00000289153	human	ensembl	74_37	-1	known	missense	c.2575	p.T859A	1.000	pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_adapt-bd_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,superfamily_Kinase-like_dom,superfamily_C2_dom,superfamily_ARM-type_fold,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CB	HGNC	ENSG00000051382				85	0	0	52	8	13.3333
PIK3CB	0	genome.wustl.edu	37	3	138452201	138452201	+	Splice_Site	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	138452201	138452201	A	G	SNP	PIK3CB	ENST00000289153	human	ensembl	74_37	-1	known	splice_site	c.1050+2	e6+2	1.000	-	-	-	no_errors	PIK3CB	HGNC	ENSG00000051382				34	0	0	22	2	8.33333
PIK3CB	0	genome.wustl.edu	37	3	138453548	138453548	+	Silent	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	138453548	138453548	T	G	SNP	PIK3CB	ENST00000289153	human	ensembl	74_37	-1	known	silent	c.900	p.I300	1.000	NULL	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_adapt-bd_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,superfamily_Kinase-like_dom,superfamily_C2_dom,superfamily_ARM-type_fold,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CB	HGNC	ENSG00000051382				119	0	0	103	7	6.36364
PIK3CB	0	genome.wustl.edu	37	3	138461549	138461549	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	138461549	138461549	C	T	SNP	PIK3CB	ENST00000289153	human	ensembl	74_37	-1	known	missense	c.472	p.E158K	1.000	NULL	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_adapt-bd_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,superfamily_Kinase-like_dom,superfamily_C2_dom,superfamily_ARM-type_fold,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CB	HGNC	ENSG00000051382				87	0	0	76	9	10.5882
GRK7	0	genome.wustl.edu	37	3	141497221	141497221	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	141497221	141497221	G	A	SNP	GRK7	ENST00000264952	human	ensembl	74_37	+1	known	missense	c.95	p.R32Q	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_RGS_dom,superfamily_Kinase-like_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Regulat_G_prot_signal_superfam,pfscan_Prot_kinase_dom,prints_GPCR_kinase	-	no_errors	GRK7	HGNC	ENSG00000114124				36	0	0	41	12	22.6415
TFDP2	0	genome.wustl.edu	37	3	141678643	141678643	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	141678643	141678643	G	C	SNP	TFDP2	ENST00000489671	human	ensembl	74_37	-1	known	missense	c.924	p.I308M	1.000	pfam_Transc_factor_DP_C,pirsf_Transcrpt_fac_DP	pfam_Transc_factor_DP_C,pfam_E2F_TDP,pirsf_Transcrpt_fac_DP	-	no_errors	TFDP2	HGNC	ENSG00000114126				123	0	0	90	9	9.09091
XRN1	0	genome.wustl.edu	37	3	142037739	142037739	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	142037739	142037739	T	C	SNP	XRN1	ENST00000264951	human	ensembl	74_37	-1	known	missense	c.4408	p.T1470A	1.000	pirsf_5_3_exoribonuclease_1	pfam_Put_53exo,pirsf_5_3_exoribonuclease_1	-	no_errors	XRN1	HGNC	ENSG00000114127				67	0	0	55	5	8.33333
ATR	0	genome.wustl.edu	37	3	142186802	142186802	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	142186802	142186802	T	C	SNP	ATR	ENST00000350721	human	ensembl	74_37	-1	known	missense	c.6661	p.K2221E	1.000	superfamily_Kinase-like_dom	pfam_PI3/4_kinase_cat_dom,pfam_PIK-rel_kinase_FAT,pfam_UME,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_UME,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_HEAT_type_2,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATR	HGNC	ENSG00000175054				158	0	0	125	12	8.75912
ATR	0	genome.wustl.edu	37	3	142242991	142242991	+	Silent	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	142242991	142242991	G	T	SNP	ATR	ENST00000350721	human	ensembl	74_37	-1	known	silent	c.3996	p.I1332	1.000	superfamily_ARM-type_fold	pfam_PI3/4_kinase_cat_dom,pfam_PIK-rel_kinase_FAT,pfam_UME,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_UME,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_HEAT_type_2,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATR	HGNC	ENSG00000175054				74	0	0	52	8	13.3333
CNTN6	0	genome.wustl.edu	37	3	1427478	1427478	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	1427478	1427478	T	C	SNP	CNTN6	ENST00000350110	human	ensembl	74_37	+1	known	missense	c.2701	p.S901P	1.000	superfamily_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CNTN6	HGNC	ENSG00000134115				104	0	0	112	7	5.88235
CHST2	0	genome.wustl.edu	37	3	142840751	142840751	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	142840751	142840751	C	T	SNP	CHST2	ENST00000309575	human	ensembl	74_37	+1	known	missense	c.1093	p.R365C	1.000	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,pirsf_Carbohydrate_sulfotransferase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,pirsf_Carbohydrate_sulfotransferase	-	no_errors	CHST2	HGNC	ENSG00000175040				51	0	0	42	11	20.7547
CHST2	0	genome.wustl.edu	37	3	142841186	142841186	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	142841186	142841186	C	T	SNP	CHST2	ENST00000309575	human	ensembl	74_37	+1	known	missense	c.1528	p.R510W	1.000	superfamily_P-loop_NTPase,pirsf_Carbohydrate_sulfotransferase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,pirsf_Carbohydrate_sulfotransferase	-	no_errors	CHST2	HGNC	ENSG00000175040				33	0	0	43	5	10.4167
SLC9A9	0	genome.wustl.edu	37	3	143185920	143185920	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	143185920	143185920	A	G	SNP	SLC9A9	ENST00000316549	human	ensembl	74_37	-1	known	silent	c.1428	p.F476	0.983	pfam_Cation/H_exchanger,tigrfam_NaH_exchanger	pfam_Cation/H_exchanger,prints_Na/H_exchanger_6,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A9	HGNC	ENSG00000181804				38	0	0	37	9	19.5652
CNTN6	0	genome.wustl.edu	37	3	1444125	1444125	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	1444125	1444125	G	A	SNP	CNTN6	ENST00000350110	human	ensembl	74_37	+1	known	missense	c.2941	p.G981R	1.000	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CNTN6	HGNC	ENSG00000134115				67	0	0	49	4	7.54717
GRIP2	0	genome.wustl.edu	37	3	14545130	14545130	+	RNA	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	14545130	14545130	C	A	SNP	GRIP2	ENST00000273083	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	GRIP2	HGNC	ENSG00000144596				19	0	0	17	3	15
PLOD2	0	genome.wustl.edu	37	3	145824343	145824343	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	145824343	145824343	T	G	SNP	PLOD2	ENST00000282903	human	ensembl	74_37	-1	known	missense	c.591	p.K197N	1.000	NULL	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	PLOD2	HGNC	ENSG00000152952				122	0	0	96	13	11.9266
CCDC174	0	genome.wustl.edu	37	3	14708358	14708358	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	14708358	14708358	A	G	SNP	CCDC174	ENST00000383794	human	ensembl	74_37	+1	known	missense	c.628	p.R210G	1.000	NULL	NULL	-	no_errors	CCDC174	HGNC	ENSG00000154781				219	1	0.454545	187	11	5.55556
ZIC1	0	genome.wustl.edu	37	3	147128883	147128883	+	Splice_Site	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	147128883	147128883	T	C	SNP	ZIC1	ENST00000282928	human	ensembl	74_37	+1	known	splice_site	c.982+2	e1+2	1.000	-	-	-	no_errors	ZIC1	HGNC	ENSG00000152977				40	0	0	37	3	7.5
FGD5	0	genome.wustl.edu	37	3	14862604	14862604	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	14862604	14862604	T	C	SNP	FGD5	ENST00000285046	human	ensembl	74_37	+1	known	missense	c.2026	p.S676P	0.919	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Znf_FYVE,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD5	HGNC	ENSG00000154783				69	0	0	60	4	6.25
HLTF	0	genome.wustl.edu	37	3	148750057	148750057	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	148750057	148750057	C	T	SNP	HLTF	ENST00000310053	human	ensembl	74_37	-1	known	missense	c.2980	p.E994K	0.990	superfamily_P-loop_NTPase,pfscan_Helicase_C	pfam_SNF2_N,pfam_HIP116_Rad5p_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_HIP116_Rad5p_N,smart_Helicase_ATP-bd,smart_Znf_RING,smart_Helicase_C,pfscan_Znf_RING,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	HLTF	HGNC	ENSG00000071794				71	0	0	35	3	7.89474
CP	0	genome.wustl.edu	37	3	148894077	148894077	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	148894077	148894077	A	G	SNP	CP	ENST00000264613	human	ensembl	74_37	-1	known	silent	c.3141	p.H1047	0.128	pfam_Cu-oxidase_2,pfam_Cu-oxidase,superfamily_Cupredoxin	pfam_Cu-oxidase_2,pfam_Cu-oxidase_3,pfam_Cu-oxidase,superfamily_Cupredoxin	-	no_errors	CP	HGNC	ENSG00000047457				119	0	0	113	8	6.61157
CP	0	genome.wustl.edu	37	3	148896212	148896212	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	148896212	148896212	A	T	SNP	CP	ENST00000264613	human	ensembl	74_37	-1	known	missense	c.2868	p.N956K	0.996	pfam_Cu-oxidase,superfamily_Cupredoxin	pfam_Cu-oxidase_2,pfam_Cu-oxidase_3,pfam_Cu-oxidase,superfamily_Cupredoxin	-	no_errors	CP	HGNC	ENSG00000047457				110	0	0	87	11	11.2245
TM4SF18	0	genome.wustl.edu	37	3	149051032	149051032	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	149051032	149051032	G	A	SNP	TM4SF18	ENST00000296059	human	ensembl	74_37	-1	known	silent	c.138	p.Y46	1.000	pfam_L6_membrane	pfam_L6_membrane	-	no_errors	TM4SF18	HGNC	ENSG00000163762				113	0	0	98	7	6.66667
COMMD2	0	genome.wustl.edu	37	3	149468597	149468597	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	149468597	149468597	T	C	SNP	COMMD2	ENST00000483708	human	ensembl	74_37	-1	known	missense	c.350	p.D117G	1.000	NULL	pfam_HCaRG	-	no_errors	COMMD2	HGNC	ENSG00000114744				159	0	0	129	8	5.83942
FGD5	0	genome.wustl.edu	37	3	14949150	14949150	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	14949150	14949150	A	G	SNP	FGD5	ENST00000285046	human	ensembl	74_37	+1	known	missense	c.3268	p.N1090D	1.000	superfamily_DH-domain	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Znf_FYVE,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD5	HGNC	ENSG00000154783				42	0	0	56	5	8.19672
FGD5	0	genome.wustl.edu	37	3	14960286	14960286	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	14960286	14960286	T	C	SNP	FGD5	ENST00000285046	human	ensembl	74_37	+1	known	missense	c.3515	p.V1172A	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Znf_FYVE,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD5	HGNC	ENSG00000154783				65	0	0	74	5	6.32911
FGD5	0	genome.wustl.edu	37	3	14960290	14960290	+	Silent	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	14960290	14960290	C	A	SNP	FGD5	ENST00000285046	human	ensembl	74_37	+1	known	silent	c.3519	p.P1173	0.998	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Znf_FYVE,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD5	HGNC	ENSG00000154783				63	0	0	75	8	9.63855
FGD5	0	genome.wustl.edu	37	3	14967691	14967691	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	14967691	14967691	T	C	SNP	FGD5	ENST00000285046	human	ensembl	74_37	+1	known	missense	c.4183	p.Y1395H	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Znf_FYVE,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD5	HGNC	ENSG00000154783				109	0	0	92	14	13.2075
RNF13	0	genome.wustl.edu	37	3	149678562	149678562	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	149678562	149678562	A	G	SNP	RNF13	ENST00000344229	human	ensembl	74_37	+1	known	missense	c.817	p.K273E	1.000	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	pfam_Protease-assoc_domain,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF13	HGNC	ENSG00000082996				69	0	0	41	5	10.8696
PFN2	0	genome.wustl.edu	37	3	149686261	149686261	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	149686261	149686261	T	C	SNP	PFN2	ENST00000239940	human	ensembl	74_37	-1	known	missense	c.209	p.K70R	1.000	pfam_Profilin_eukaryotes/bac,superfamily_Profilin_eukaryotes/bac,smart_Profilin_eukaryotes/bac,prints_Profilin_chordates,prints_Profilin_eukaryotes/bac	pfam_Profilin_eukaryotes/bac,superfamily_Profilin_eukaryotes/bac,smart_Profilin_eukaryotes/bac,prints_Profilin_chordates,prints_Profilin_eukaryotes/bac	-	no_errors	PFN2	HGNC	ENSG00000070087				301	0	0	258	29	10.1045
EIF2A	0	genome.wustl.edu	37	3	150282089	150282089	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	150282089	150282089	T	G	SNP	EIF2A	ENST00000460851	human	ensembl	74_37	+1	known	missense	c.396	p.C132W	1.000	pirsf_TIF2A	pfam_TIF_beta_prop-like,pirsf_TIF2A	-	no_errors	EIF2A	HGNC	ENSG00000144895				39	0	0	30	3	9.09091
SIAH2	0	genome.wustl.edu	37	3	150460021	150460021	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	150460021	150460021	G	A	SNP	SIAH2	ENST00000312960	human	ensembl	74_37	-1	known	silent	c.882	p.S294	0.899	pfam_7-in-absentia-prot_TRAF-dom,superfamily_TRAF-like	pfam_7-in-absentia-prot_TRAF-dom,superfamily_TRAF-like,pfscan_Znf_RING,pfscan_Znf_SIAH	-	no_errors	SIAH2	HGNC	ENSG00000181788				79	0	0	69	6	8
MED12L	0	genome.wustl.edu	37	3	150845683	150845683	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	150845683	150845683	A	G	SNP	MED12L	ENST00000474524	human	ensembl	74_37	+1	known	silent	c.468	p.A156	0.996	pfam_Mediator_Med12	pfam_Mediator_Med12_LCEWAV,pfam_Mediator_Med12,pfam_Mediator_Med12_catenin-bd	-	no_errors	MED12L	HGNC	ENSG00000144893				95	0	0	73	9	10.9756
MED12L	0	genome.wustl.edu	37	3	150874007	150874007	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	150874007	150874007	T	C	SNP	MED12L	ENST00000474524	human	ensembl	74_37	+1	known	missense	c.616	p.Y206H	1.000	NULL	pfam_Mediator_Med12_LCEWAV,pfam_Mediator_Med12,pfam_Mediator_Med12_catenin-bd	-	no_errors	MED12L	HGNC	ENSG00000144893				83	0	0	72	9	11.1111
MRPS25	0	genome.wustl.edu	37	3	15094115	15094115	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	15094115	15094115	C	T	SNP	MRPS25	ENST00000253686	human	ensembl	74_37	-1	known	missense	c.355	p.E119K	1.000	NULL	pfam_Ribosome/NADH_DH,superfamily_Thioredoxin-like_fold,smart_Ribosome/NADH_DH	-	no_errors	MRPS25	HGNC	ENSG00000131368				158	0	0	126	29	18.7097
GPR87	0	genome.wustl.edu	37	3	151012189	151012189	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	151012189	151012189	C	A	SNP	GPR87	ENST00000260843	human	ensembl	74_37	-1	known	missense	c.845	p.R282M	0.064	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_P2Y13_rcpt,prints_P2Y14_rcpt	-	no_errors	GPR87	HGNC	ENSG00000138271				127	0	0	100	7	6.54206
GPR87	0	genome.wustl.edu	37	3	151012373	151012373	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	151012373	151012373	T	C	SNP	GPR87	ENST00000260843	human	ensembl	74_37	-1	known	missense	c.661	p.I221V	0.988	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_P2Y13_rcpt,prints_P2Y14_rcpt	-	no_errors	GPR87	HGNC	ENSG00000138271				110	0	0	70	7	9.09091
P2RY12	0	genome.wustl.edu	37	3	151055700	151055700	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	151055700	151055700	T	C	SNP	P2RY12	ENST00000302632	human	ensembl	74_37	-1	known	missense	c.934	p.M312V	0.734	prints_P2Y12_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_P2Y12_rcpt,prints_GPCR_Rhodpsn,prints_P2Y13_rcpt,prints_P2Y14_rcpt	-	no_errors	P2RY12	HGNC	ENSG00000169313				149	0	0	106	15	12.3967
P2RY12	0	genome.wustl.edu	37	3	151055985	151055985	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	151055985	151055985	A	G	SNP	P2RY12	ENST00000302632	human	ensembl	74_37	-1	known	missense	c.649	p.Y217H	0.990	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_P2Y13_rcpt,prints_P2Y14_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_P2Y12_rcpt,prints_GPCR_Rhodpsn,prints_P2Y13_rcpt,prints_P2Y14_rcpt	-	no_errors	P2RY12	HGNC	ENSG00000169313				61	0	0	62	7	10.1449
MED12L	0	genome.wustl.edu	37	3	151085503	151085503	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	151085503	151085503	T	C	SNP	MED12L	ENST00000474524	human	ensembl	74_37	+1	known	missense	c.3292	p.S1098P	1.000	NULL	pfam_Mediator_Med12_LCEWAV,pfam_Mediator_Med12,pfam_Mediator_Med12_catenin-bd	-	no_errors	MED12L	HGNC	ENSG00000144893				191	0	0	185	28	13.1455
MED12L	0	genome.wustl.edu	37	3	151102876	151102876	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	151102876	151102876	T	C	SNP	MED12L	ENST00000474524	human	ensembl	74_37	+1	known	missense	c.4880	p.L1627S	1.000	NULL	pfam_Mediator_Med12_LCEWAV,pfam_Mediator_Med12,pfam_Mediator_Med12_catenin-bd	-	no_errors	MED12L	HGNC	ENSG00000144893				236	0	0	160	12	6.97674
ZFYVE20	0	genome.wustl.edu	37	3	15116040	15116040	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	15116040	15116040	T	A	SNP	ZFYVE20	ENST00000253699	human	ensembl	74_37	-1	known	missense	c.1604	p.E535V	1.000	NULL	pfam_Rbsn,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel,pfscan_Znf_C2H2	-	no_errors	ZFYVE20	HGNC	ENSG00000131381				92	0	0	83	9	9.78261
IGSF10	0	genome.wustl.edu	37	3	151161304	151161304	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	151161304	151161304	T	C	SNP	IGSF10	ENST00000282466	human	ensembl	74_37	-1	known	missense	c.5431	p.S1811G	0.227	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	IGSF10	HGNC	ENSG00000152580				69	0	0	59	9	13.2353
IGSF10	0	genome.wustl.edu	37	3	151164151	151164151	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	151164151	151164151	T	A	SNP	IGSF10	ENST00000282466	human	ensembl	74_37	-1	known	missense	c.3618	p.Q1206H	0.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	IGSF10	HGNC	ENSG00000152580				185	0	0	163	10	5.78035
AADACL2	0	genome.wustl.edu	37	3	151458527	151458527	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	151458527	151458527	T	A	SNP	AADACL2	ENST00000356517	human	ensembl	74_37	+1	known	missense	c.232	p.Y78N	0.001	pirsf_Arylacetamide_deacetylase	pfam_AB_hydrolase_3,pfam_CarbesteraseB,pfam_Steryl_acetyl_hydrolase,pirsf_Arylacetamide_deacetylase	-	no_errors	AADACL2	HGNC	ENSG00000197953				108	0	0	66	6	8.33333
AADACL2	0	genome.wustl.edu	37	3	151458575	151458575	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	151458575	151458575	T	A	SNP	AADACL2	ENST00000356517	human	ensembl	74_37	+1	known	missense	c.280	p.Y94N	0.601	pfam_CarbesteraseB,pirsf_Arylacetamide_deacetylase	pfam_AB_hydrolase_3,pfam_CarbesteraseB,pfam_Steryl_acetyl_hydrolase,pirsf_Arylacetamide_deacetylase	-	no_errors	AADACL2	HGNC	ENSG00000197953				113	0	0	65	8	10.9589
AADACL2	0	genome.wustl.edu	37	3	151474982	151474982	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	151474982	151474982	A	C	SNP	AADACL2	ENST00000356517	human	ensembl	74_37	+1	known	missense	c.806	p.H269P	1.000	pirsf_Arylacetamide_deacetylase	pfam_AB_hydrolase_3,pfam_CarbesteraseB,pfam_Steryl_acetyl_hydrolase,pirsf_Arylacetamide_deacetylase	-	no_errors	AADACL2	HGNC	ENSG00000197953				136	0	0	139	9	6.08108
TMEM14E	0	genome.wustl.edu	37	3	152058522	152058522	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	152058522	152058522	G	A	SNP	TMEM14E	ENST00000408960	human	ensembl	74_37	-1	known	missense	c.172	p.R58W	0.000	pfam_UPF0136_TM	pfam_UPF0136_TM	-	no_errors	TMEM14E	HGNC	ENSG00000221962				79	0	0	69	7	9.21053
P2RY1	0	genome.wustl.edu	37	3	152554074	152554074	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	152554074	152554074	C	T	SNP	P2RY1	ENST00000305097	human	ensembl	74_37	+1	known	missense	c.503	p.A168V	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_P2Y1_rcpt,prints_GPCR_Rhodpsn	-	no_errors	P2RY1	HGNC	ENSG00000169860				68	0	0	68	7	9.33333
ARHGEF26	0	genome.wustl.edu	37	3	153840495	153840495	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	153840495	153840495	C	G	SNP	ARHGEF26	ENST00000356448	human	ensembl	74_37	+1	known	missense	c.714	p.N238K	1.000	NULL	pfam_DH-domain,pfam_SH3_domain,pfam_SH3_2,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ARHGEF26	HGNC	ENSG00000114790				23	0	0	21	6	22.2222
DHX36	0	genome.wustl.edu	37	3	154007584	154007584	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	154007584	154007584	T	G	SNP	DHX36	ENST00000496811	human	ensembl	74_37	-1	known	missense	c.1846	p.N616H	1.000	superfamily_P-loop_NTPase,pfscan_Helicase_C	pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX36	HGNC	ENSG00000174953				58	0	0	28	6	17.6471
DHX36	0	genome.wustl.edu	37	3	154033048	154033048	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	154033048	154033048	A	G	SNP	DHX36	ENST00000496811	human	ensembl	74_37	-1	known	silent	c.390	p.T130	0.860	NULL	pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX36	HGNC	ENSG00000174953				77	0	0	71	7	8.97436
GPR149	0	genome.wustl.edu	37	3	154146892	154146892	+	Silent	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	154146892	154146892	G	T	SNP	GPR149	ENST00000389740	human	ensembl	74_37	-1	known	silent	c.513	p.G171	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	GPR149	HGNC	ENSG00000174948				47	0	0	39	6	13.3333
MME	0	genome.wustl.edu	37	3	154834710	154834710	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	154834710	154834710	A	G	SNP	MME	ENST00000360490	human	ensembl	74_37	+1	known	missense	c.589	p.K197E	1.000	pfam_Peptidase_M13_N	pfam_Peptidase_M13_N,pfam_Peptidase_M13_C,prints_Peptidase_M13_C	-	no_errors	MME	HGNC	ENSG00000196549				105	0	0	68	6	8.10811
PLCH1	0	genome.wustl.edu	37	3	155199955	155199955	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	155199955	155199955	G	T	SNP	PLCH1	ENST00000340059	human	ensembl	74_37	-1	known	missense	c.3884	p.A1295D	0.865	NULL	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_Pleckstrin_homology,smart_EF_hand_dom,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,pfscan_EF_hand_dom,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCH1	HGNC	ENSG00000114805				265	2	0.749064	226	19	7.7551
PLCH1	0	genome.wustl.edu	37	3	155210593	155210593	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	155210593	155210593	C	T	SNP	PLCH1	ENST00000340059	human	ensembl	74_37	-1	known	silent	c.2196	p.K732	0.993	superfamily_C2_dom,pfscan_C2_dom	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_Pleckstrin_homology,smart_EF_hand_dom,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,pfscan_EF_hand_dom,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCH1	HGNC	ENSG00000114805				114	0	0	100	9	8.25688
PLCH1	0	genome.wustl.edu	37	3	155232571	155232571	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	155232571	155232571	A	G	SNP	PLCH1	ENST00000340059	human	ensembl	74_37	-1	known	missense	c.1537	p.F513L	1.000	superfamily_PLC-like_Pdiesterase_TIM-brl	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_Pleckstrin_homology,smart_EF_hand_dom,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,pfscan_EF_hand_dom,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCH1	HGNC	ENSG00000114805				90	0	0	80	6	6.97674
PLCH1	0	genome.wustl.edu	37	3	155232581	155232581	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	155232581	155232581	A	T	SNP	PLCH1	ENST00000340059	human	ensembl	74_37	-1	known	missense	c.1527	p.D509E	0.980	superfamily_PLC-like_Pdiesterase_TIM-brl	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_Pleckstrin_homology,smart_EF_hand_dom,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,pfscan_EF_hand_dom,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCH1	HGNC	ENSG00000114805				93	0	0	80	9	10.1124
PLCH1	0	genome.wustl.edu	37	3	155314063	155314063	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	155314063	155314063	G	A	SNP	PLCH1	ENST00000340059	human	ensembl	74_37	-1	known	missense	c.148	p.R50C	1.000	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_Pleckstrin_homology,smart_EF_hand_dom,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,pfscan_EF_hand_dom,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCH1	HGNC	ENSG00000114805				230	0	0	216	14	6.08696
SLC33A1	0	genome.wustl.edu	37	3	155571069	155571069	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	155571069	155571069	A	G	SNP	SLC33A1	ENST00000359479	human	ensembl	74_37	-1	known	missense	c.718	p.F240L	1.000	superfamily_MFS_dom_general_subst_transpt,tigrfam_AmpG_permease/AT-1	superfamily_MFS_dom_general_subst_transpt,tigrfam_AmpG_permease/AT-1	-	no_errors	SLC33A1	HGNC	ENSG00000169359				82	0	0	63	10	13.6986
GMPS	0	genome.wustl.edu	37	3	155624029	155624029	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	155624029	155624029	C	T	SNP	GMPS	ENST00000496455	human	ensembl	74_37	+1	known	missense	c.503	p.A168V	1.000	pfam_GATASE,pfam_Peptidase_C26,tigrfam_GMP_synth_N	pfam_GATASE,pfam_GMP_synth_C,pfam_Peptidase_C26,pfam_NAD/GMP_synthase,pfam_QueC,pfam_Asn_synthase,pfam_tRNA-specific_2-thiouridylase,tigrfam_GMP_synth_N	-	no_errors	GMPS	HGNC	ENSG00000163655				217	0	0	154	14	8.33333
KCNAB1	0	genome.wustl.edu	37	3	156241671	156241671	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	156241671	156241671	A	C	SNP	KCNAB1	ENST00000490337	human	ensembl	74_37	+1	known	missense	c.1016	p.N339T	1.000	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_K_chnl_volt-dep_bsu_KCNAB1,prints_K_chnl_volt-dep_bsu_KCNAB3,tigrfam_K_chnl_volt-dep_bsu_KCNAB	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_K_chnl_volt-dep_bsu_KCNAB-rel,prints_K_chnl_volt-dep_bsu_KCNAB1,prints_K_chnl_volt-dep_bsu_KCNAB3,tigrfam_K_chnl_volt-dep_bsu_KCNAB	-	no_errors	KCNAB1	HGNC	ENSG00000169282				160	1	0.621118	133	10	6.99301
VEPH1	0	genome.wustl.edu	37	3	156979019	156979019	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	156979019	156979019	C	A	SNP	VEPH1	ENST00000362010	human	ensembl	74_37	-1	known	missense	c.2406	p.K802N	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Pleckstrin_homology,superfamily_ARM-type_fold,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	VEPH1	HGNC	ENSG00000197415				120	1	0.826446	102	9	8.10811
VEPH1	0	genome.wustl.edu	37	3	157031509	157031509	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	157031509	157031509	A	G	SNP	VEPH1	ENST00000362010	human	ensembl	74_37	-1	known	silent	c.1911	p.H637	0.008	NULL	pfam_Pleckstrin_homology,superfamily_ARM-type_fold,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	VEPH1	HGNC	ENSG00000197415				131	0	0	78	6	7.14286
ANKRD28	0	genome.wustl.edu	37	3	15726808	15726808	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	15726808	15726808	C	A	SNP	ANKRD28	ENST00000383777	human	ensembl	74_37	-1	known	missense	c.2323	p.A775S	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD28	HGNC	ENSG00000206560				230	0	0	176	13	6.87831
ANKRD28	0	genome.wustl.edu	37	3	15731544	15731544	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	15731544	15731544	T	C	SNP	ANKRD28	ENST00000383777	human	ensembl	74_37	-1	known	missense	c.1954	p.T652A	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD28	HGNC	ENSG00000206560				32	0	0	17	3	15
ANKRD28	0	genome.wustl.edu	37	3	15753728	15753728	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	15753728	15753728	G	A	SNP	ANKRD28	ENST00000383777	human	ensembl	74_37	-1	known	missense	c.1201	p.R401C	1.000	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD28	HGNC	ENSG00000206560				18	0	0	8	3	27.2727
GFM1	0	genome.wustl.edu	37	3	158364621	158364621	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	158364621	158364621	T	C	SNP	GFM1	ENST00000486715	human	ensembl	74_37	+1	known	missense	c.457	p.C153R	1.000	pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,tigrfam_Transl_elong_EFG/EF2,tigrfam_Small_GTP-bd_dom	pfam_EF_GTP-bd_dom,pfam_Transl_elong_EFG/EF2_IV,pfam_EFG_V,pfam_Transl_elong_EFTu/EF1A_2,superfamily_P-loop_NTPase,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_Transl_B-barrel,superfamily_EFG_III-V,smart_Transl_elong_EFG/EF2_IV,smart_EFG_V,prints_EF_GTP-bd_dom,tigrfam_Transl_elong_EFG/EF2,tigrfam_Small_GTP-bd_dom	-	no_errors	GFM1	HGNC	ENSG00000168827				64	0	0	48	3	5.88235
GFM1	0	genome.wustl.edu	37	3	158366884	158366884	+	Silent	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	158366884	158366884	T	A	SNP	GFM1	ENST00000486715	human	ensembl	74_37	+1	known	silent	c.627	p.G209	0.009	pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,tigrfam_Transl_elong_EFG/EF2,tigrfam_Small_GTP-bd_dom	pfam_EF_GTP-bd_dom,pfam_Transl_elong_EFG/EF2_IV,pfam_EFG_V,pfam_Transl_elong_EFTu/EF1A_2,superfamily_P-loop_NTPase,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_Transl_B-barrel,superfamily_EFG_III-V,smart_Transl_elong_EFG/EF2_IV,smart_EFG_V,prints_EF_GTP-bd_dom,tigrfam_Transl_elong_EFG/EF2,tigrfam_Small_GTP-bd_dom	-	no_errors	GFM1	HGNC	ENSG00000168827				183	0	0	147	8	5.16129
GFM1	0	genome.wustl.edu	37	3	158369951	158369951	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	158369951	158369951	G	A	SNP	GFM1	ENST00000486715	human	ensembl	74_37	+1	known	silent	c.756	p.E252	1.000	pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,tigrfam_Transl_elong_EFG/EF2	pfam_EF_GTP-bd_dom,pfam_Transl_elong_EFG/EF2_IV,pfam_EFG_V,pfam_Transl_elong_EFTu/EF1A_2,superfamily_P-loop_NTPase,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_Transl_B-barrel,superfamily_EFG_III-V,smart_Transl_elong_EFG/EF2_IV,smart_EFG_V,prints_EF_GTP-bd_dom,tigrfam_Transl_elong_EFG/EF2,tigrfam_Small_GTP-bd_dom	-	no_errors	GFM1	HGNC	ENSG00000168827				115	0	0	85	11	11.4583
GFM1	0	genome.wustl.edu	37	3	158399908	158399908	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	158399908	158399908	T	C	SNP	GFM1	ENST00000486715	human	ensembl	74_37	+1	known	missense	c.1726	p.S576P	0.225	pfam_Transl_elong_EFG/EF2_IV,superfamily_Ribosomal_S5_D2-typ_fold,smart_Transl_elong_EFG/EF2_IV,tigrfam_Transl_elong_EFG/EF2	pfam_EF_GTP-bd_dom,pfam_Transl_elong_EFG/EF2_IV,pfam_EFG_V,pfam_Transl_elong_EFTu/EF1A_2,superfamily_P-loop_NTPase,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_Transl_B-barrel,superfamily_EFG_III-V,smart_Transl_elong_EFG/EF2_IV,smart_EFG_V,prints_EF_GTP-bd_dom,tigrfam_Transl_elong_EFG/EF2,tigrfam_Small_GTP-bd_dom	-	no_errors	GFM1	HGNC	ENSG00000168827				40	0	0	36	2	5.26316
IFT80	0	genome.wustl.edu	37	3	160099392	160099392	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	160099392	160099392	A	G	SNP	IFT80	ENST00000326448	human	ensembl	74_37	-1	known	missense	c.158	p.L53P	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	IFT80	HGNC	ENSG00000068885				128	0	0	91	6	6.18557
SMC4	0	genome.wustl.edu	37	3	160146611	160146611	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	160146611	160146611	A	G	SNP	SMC4	ENST00000344722	human	ensembl	74_37	+1	known	silent	c.2676	p.V892	0.971	pfam_RecF/RecN/SMC_N,superfamily_P-loop_NTPase,superfamily_Prefoldin	pfam_RecF/RecN/SMC_N,pfam_SMC_hinge,superfamily_P-loop_NTPase,superfamily_SMC_hinge,superfamily_Chemotax_Me-accpt_rcpt_lig-bd,superfamily_Prefoldin,smart_SMC_hinge	-	no_errors	SMC4	HGNC	ENSG00000113810				105	0	0	90	9	9.09091
TRIM59	0	genome.wustl.edu	37	3	160155817	160155817	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	160155817	160155817	T	C	SNP	TRIM59	ENST00000309784	human	ensembl	74_37	-1	known	missense	c.1155	p.I385M	0.000	NULL	pfam_Znf_C3HC4_RING-type,pfam_Znf_B-box,smart_Znf_RING,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM59	HGNC	ENSG00000213186				76	0	0	46	5	9.80392
NMD3	0	genome.wustl.edu	37	3	160951189	160951189	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	160951189	160951189	A	G	SNP	NMD3	ENST00000351193	human	ensembl	74_37	+1	known	silent	c.279	p.V93	0.908	pfam_NMD3	pfam_NMD3	-	no_errors	NMD3	HGNC	ENSG00000169251				71	0	0	47	4	7.84314
ENSG00000269888	0	genome.wustl.edu	37	3	161146942	161146942	+	RNA	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	161146942	161146942	A	G	SNP	ENSG00000269888	ENST00000602890	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-3P17.5	Clone_based_vega_gene	ENSG00000269888				148	0	0	88	25	22.1239
GALNT15	0	genome.wustl.edu	37	3	16260950	16260950	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	16260950	16260950	G	T	SNP	GALNT15	ENST00000339732	human	ensembl	74_37	+1	known	missense	c.1433	p.R478M	0.998	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT15	HGNC	ENSG00000131386				173	0	0	161	11	6.39535
GALNT15	0	genome.wustl.edu	37	3	16261424	16261424	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	16261424	16261424	A	C	SNP	GALNT15	ENST00000339732	human	ensembl	74_37	+1	known	missense	c.1532	p.N511T	0.978	pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT15	HGNC	ENSG00000131386				236	0	0	210	15	6.66667
SI	0	genome.wustl.edu	37	3	164750471	164750471	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	164750471	164750471	C	G	SNP	SI	ENST00000264382	human	ensembl	74_37	-1	known	missense	c.2575	p.D859H	0.000	NULL	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Gal_mutarotase_SF_dom,smart_P_trefoil	-	no_errors	SI	HGNC	ENSG00000090402				60	0	0	48	5	9.43396
SI	0	genome.wustl.edu	37	3	164764647	164764647	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	164764647	164764647	A	G	SNP	SI	ENST00000264382	human	ensembl	74_37	-1	known	silent	c.1869	p.S623	0.145	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Gal_mutarotase_SF_dom,smart_P_trefoil	-	no_errors	SI	HGNC	ENSG00000090402				138	0	0	103	6	5.50459
SLITRK3	0	genome.wustl.edu	37	3	164906123	164906123	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	164906123	164906123	C	T	SNP	SLITRK3	ENST00000241274	human	ensembl	74_37	-1	known	silent	c.2496	p.T832	0.042	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK3	HGNC	ENSG00000121871				109	0	0	117	8	6.4
BCHE	0	genome.wustl.edu	37	3	165547744	165547744	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	165547744	165547744	A	G	SNP	BCHE	ENST00000264381	human	ensembl	74_37	-1	known	missense	c.1078	p.Y360H	1.000	pfam_CarbesteraseB,prints_Cholinesterase	pfam_CarbesteraseB,pfam_AChE_tetra,pfam_AB_hydrolase_3,prints_Cholinesterase	-	no_errors	BCHE	HGNC	ENSG00000114200				48	0	0	42	5	10.6383
SERPINI2	0	genome.wustl.edu	37	3	167189553	167189553	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	167189553	167189553	G	A	SNP	SERPINI2	ENST00000264677	human	ensembl	74_37	-1	known	nonsense	c.70	p.Q24*	0.003	superfamily_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINI2	HGNC	ENSG00000114204				234	0	0	186	11	5.58376
MECOM	0	genome.wustl.edu	37	3	168833263	168833263	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	168833263	168833263	T	C	SNP	MECOM	ENST00000494292	human	ensembl	74_37	-1	known	silent	c.2397	p.G799	0.991	NULL	pfam_Znf_C2H2,pfam_Znf_BED_prd,smart_SET_dom,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	MECOM	HGNC	ENSG00000085276				66	0	0	61	11	15.2778
MECOM	0	genome.wustl.edu	37	3	169099286	169099286	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	169099286	169099286	G	A	SNP	MECOM	ENST00000494292	human	ensembl	74_37	-1	known	missense	c.64	p.P22S	1.000	NULL	pfam_Znf_C2H2,pfam_Znf_BED_prd,smart_SET_dom,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	MECOM	HGNC	ENSG00000085276				37	0	0	27	7	20.5882
MYNN	0	genome.wustl.edu	37	3	169497203	169497203	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	169497203	169497203	A	G	SNP	MYNN	ENST00000349841	human	ensembl	74_37	+1	known	missense	c.914	p.N305S	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	MYNN	HGNC	ENSG00000085274				60	0	0	52	5	8.77193
LRRC31	0	genome.wustl.edu	37	3	169574164	169574164	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	169574164	169574164	T	A	SNP	LRRC31	ENST00000316428	human	ensembl	74_37	-1	known	missense	c.783	p.L261F	0.996	smart_Leu-rich_rpt_RNase_inh_sub-typ	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC31	HGNC	ENSG00000114248				148	0	0	82	6	6.81818
LOC100128164	0	genome.wustl.edu	37	3	169664276	169664276	+	RNA	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	169664276	169664276	G	T	SNP	LOC100128164	ENST00000483289	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-379K17.4	Clone_based_vega_gene	ENSG00000239219				75	0	0	76	10	11.6279
GPR160	0	genome.wustl.edu	37	3	169801907	169801907	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	169801907	169801907	C	T	SNP	GPR160	ENST00000355897	human	ensembl	74_37	+1	known	silent	c.147	p.N49	0.000	pfscan_GPCR_Rhodpsn_7TM	pfscan_GPCR_Rhodpsn_7TM	-	no_errors	GPR160	HGNC	ENSG00000173890				134	0	0	89	7	7.29167
GPR160	0	genome.wustl.edu	37	3	169802241	169802241	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	169802241	169802241	T	C	SNP	GPR160	ENST00000355897	human	ensembl	74_37	+1	known	missense	c.481	p.Y161H	0.000	pfscan_GPCR_Rhodpsn_7TM	pfscan_GPCR_Rhodpsn_7TM	-	no_errors	GPR160	HGNC	ENSG00000173890				86	0	0	61	5	7.57576
PHC3	0	genome.wustl.edu	37	3	169831155	169831155	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	169831155	169831155	A	G	SNP	PHC3	ENST00000495893	human	ensembl	74_37	-1	known	silent	c.2346	p.I782	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM,pfscan_Znf_FCS	-	no_errors	PHC3	HGNC	ENSG00000173889				66	0	0	75	7	8.53659
SLC7A14	0	genome.wustl.edu	37	3	170219127	170219127	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	170219127	170219127	G	T	SNP	SLC7A14	ENST00000231706	human	ensembl	74_37	-1	known	nonsense	c.312	p.C104*	1.000	pfam_AA-permease/SLC12A_dom	pfam_AA-permease/SLC12A_dom	-	no_errors	SLC7A14	HGNC	ENSG00000013293				26	0	0	28	3	9.67742
SLC7A14	0	genome.wustl.edu	37	3	170244439	170244439	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	170244439	170244439	A	T	SNP	SLC7A14	ENST00000231706	human	ensembl	74_37	-1	known	missense	c.287	p.V96D	0.996	pfam_AA-permease/SLC12A_dom	pfam_AA-permease/SLC12A_dom	-	no_errors	SLC7A14	HGNC	ENSG00000013293				97	0	0	92	5	5.15464
PLCL2	0	genome.wustl.edu	37	3	17053060	17053060	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	17053060	17053060	G	T	SNP	PLCL2	ENST00000418129	human	ensembl	74_37	+1	known	missense	c.1844	p.S615I	1.000	superfamily_PLC-like_Pdiesterase_TIM-brl,pfscan_C2_dom	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_Pleckstrin_homology,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCL2	HGNC	ENSG00000154822				68	0	0	58	6	9.375
EIF5A2	0	genome.wustl.edu	37	3	170611130	170611130	+	RNA	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	170611130	170611130	T	C	SNP	EIF5A2	ENST00000460117	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.387	-	-	-	no_errors	EIF5A2	HGNC	ENSG00000163577				53	0	0	40	6	13.0435
TNIK	0	genome.wustl.edu	37	3	170885049	170885049	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	170885049	170885049	A	T	SNP	TNIK	ENST00000436636	human	ensembl	74_37	-1	known	missense	c.784	p.F262I	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Citron,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_dom	-	no_errors	TNIK	HGNC	ENSG00000154310				82	0	0	55	4	6.77966
TNIK	0	genome.wustl.edu	37	3	170945964	170945964	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	170945964	170945964	T	A	SNP	TNIK	ENST00000436636	human	ensembl	74_37	-1	known	missense	c.170	p.D57V	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Citron,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_dom	-	no_errors	TNIK	HGNC	ENSG00000154310				123	0	0	85	8	8.60215
PLD1	0	genome.wustl.edu	37	3	171455832	171455832	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	171455832	171455832	T	C	SNP	PLD1	ENST00000351298	human	ensembl	74_37	-1	known	missense	c.10	p.K4E	0.986	pirsf_PLipase_D_euk	pfam_Phox,pfam_PLipase_D/transphosphatidylase,pfam_Pleckstrin_homology,superfamily_Phox,smart_Phox,smart_Pleckstrin_homology,smart_PLipase_D/transphosphatidylase,pirsf_PLipase_D_euk,pfscan_Phox,pfscan_PLipase_D/transphosphatidylase	-	no_errors	PLD1	HGNC	ENSG00000075651				63	0	0	47	6	11.3208
TBC1D5	0	genome.wustl.edu	37	3	17202688	17202688	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	17202688	17202688	A	G	SNP	TBC1D5	ENST00000253692	human	ensembl	74_37	-1	known	missense	c.2155	p.S719P	0.998	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D5	HGNC	ENSG00000131374				74	0	0	78	5	6.0241
GHSR	0	genome.wustl.edu	37	3	172165751	172165751	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	172165751	172165751	G	A	SNP	GHSR	ENST00000241256	human	ensembl	74_37	-1	known	silent	c.453	p.A151	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_GHS-R	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_GHS-R,prints_GPCR_Rhodpsn	-	no_errors	GHSR	HGNC	ENSG00000121853				31	0	0	47	3	6
ECT2	0	genome.wustl.edu	37	3	172473166	172473166	+	Splice_Site	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	172473166	172473166	T	C	SNP	ECT2	ENST00000427830	human	ensembl	74_37	+1	known	splice_site	c.210+2	e2+2	1.000	-	-	-	no_errors	ECT2	HGNC	ENSG00000114346				57	0	0	38	4	9.52381
ECT2	0	genome.wustl.edu	37	3	172482158	172482158	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	172482158	172482158	C	T	SNP	ECT2	ENST00000427830	human	ensembl	74_37	+1	known	missense	c.1066	p.L356F	1.000	NULL	pfam_DH-domain,pfam_BRCT_dom,superfamily_DH-domain,superfamily_BRCT_dom,smart_BRCT_dom,smart_DH-domain,pfscan_BRCT_dom,pfscan_DH-domain	-	no_errors	ECT2	HGNC	ENSG00000114346				91	0	0	68	5	6.84932
SPATA16	0	genome.wustl.edu	37	3	172607409	172607409	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	172607409	172607409	C	T	SNP	SPATA16	ENST00000351008	human	ensembl	74_37	-1	known	missense	c.1661	p.R554Q	1.000	NULL	NULL	-	no_errors	SPATA16	HGNC	ENSG00000144962				208	0	0	154	20	11.4943
NLGN1	0	genome.wustl.edu	37	3	173999064	173999064	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	173999064	173999064	C	T	SNP	NLGN1	ENST00000401917	human	ensembl	74_37	+1	known	missense	c.2563	p.P855S	1.000	NULL	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Neuroligin	-	no_errors	NLGN1	HGNC	ENSG00000169760				48	0	0	27	4	12.9032
ZMAT3	0	genome.wustl.edu	37	3	178748682	178748682	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	178748682	178748682	G	T	SNP	ZMAT3	ENST00000311417	human	ensembl	74_37	-1	known	missense	c.376	p.P126T	0.178	NULL	pfam_Znf_C2H2_jaz,smart_Znf_U1,smart_Znf_C2H2-like	-	no_errors	ZMAT3	HGNC	ENSG00000172667				142	0	0	166	14	7.77778
PIK3CA	0	genome.wustl.edu	37	3	178921493	178921493	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	178921493	178921493	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	74_37	+1	known	silent	c.975	p.K325	1.000	smart_PI3K_C2_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879				152	0	0	120	13	9.77444
PIK3CA	0	genome.wustl.edu	37	3	178927472	178927472	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	178927472	178927472	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	74_37	+1	known	missense	c.1235	p.R412Q	1.000	pfam_PI3K_C2_dom,superfamily_C2_dom,smart_PI3K_C2_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879				249	0	0	149	44	22.7979
PIK3CA	0	genome.wustl.edu	37	3	178936097	178936097	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	178936097	178936097	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	74_37	+1	known	missense	c.1639	p.E547K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879				102	0	0	92	7	7.07071
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	74_37	+1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879				79	0	0	62	11	15.0685
ZNF639	0	genome.wustl.edu	37	3	179046093	179046093	+	Nonsense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	179046093	179046093	T	A	SNP	ZNF639	ENST00000326361	human	ensembl	74_37	+1	known	nonsense	c.12	p.Y4*	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF639	HGNC	ENSG00000121864				56	0	0	34	4	10.5263
ZNF639	0	genome.wustl.edu	37	3	179052007	179052007	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	179052007	179052007	T	C	SNP	ZNF639	ENST00000326361	human	ensembl	74_37	+1	known	missense	c.1255	p.C419R	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF639	HGNC	ENSG00000121864				141	0	0	85	17	16.6667
MFN1	0	genome.wustl.edu	37	3	179093044	179093044	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	179093044	179093044	G	A	SNP	MFN1	ENST00000263969	human	ensembl	74_37	+1	known	missense	c.1012	p.E338K	1.000	superfamily_P-loop_NTPase	pfam_Fzo/mitofusin_HR2,pfam_Dynamin_GTPase,superfamily_P-loop_NTPase	-	no_errors	MFN1	HGNC	ENSG00000171109				56	0	0	45	5	10
MFN1	0	genome.wustl.edu	37	3	179095217	179095217	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	179095217	179095217	T	C	SNP	MFN1	ENST00000263969	human	ensembl	74_37	+1	known	missense	c.1310	p.V437A	0.998	NULL	pfam_Fzo/mitofusin_HR2,pfam_Dynamin_GTPase,superfamily_P-loop_NTPase	-	no_errors	MFN1	HGNC	ENSG00000171109				149	0	0	93	10	9.70874
ACTL6A	0	genome.wustl.edu	37	3	179292257	179292257	+	Splice_Site	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	179292257	179292257	T	C	SNP	ACTL6A	ENST00000429709	human	ensembl	74_37	+1	known	splice_site	c.476+2	e5+2	1.000	-	-	-	no_errors	ACTL6A	HGNC	ENSG00000136518				276	1	0.361011	205	15	6.81818
ACTL6A	0	genome.wustl.edu	37	3	179294685	179294685	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	179294685	179294685	A	G	SNP	ACTL6A	ENST00000429709	human	ensembl	74_37	+1	known	missense	c.752	p.H251R	1.000	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,smart_Actin-related,prints_Actin-related	-	no_errors	ACTL6A	HGNC	ENSG00000136518				90	0	0	74	4	5.12821
MRPL47	0	genome.wustl.edu	37	3	179310501	179310501	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	179310501	179310501	G	A	SNP	MRPL47	ENST00000476781	human	ensembl	74_37	-1	known	missense	c.560	p.P187L	1.000	NULL	pfam_Ribosomal_L47_mit	-	no_errors	MRPL47	HGNC	ENSG00000136522				110	0	0	74	4	5.12821
TTC14	0	genome.wustl.edu	37	3	180322027	180322027	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	180322027	180322027	A	C	SNP	TTC14	ENST00000296015	human	ensembl	74_37	+1	known	missense	c.501	p.L167F	0.650	superfamily_NA-bd_OB-fold,pfscan_Rbsml_prot_S1_RNA-bd_dom	pfam_TPR_1,superfamily_NA-bd_OB-fold,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Rbsml_prot_S1_RNA-bd_dom	-	no_errors	TTC14	HGNC	ENSG00000163728				107	0	0	81	15	15.625
TTC14	0	genome.wustl.edu	37	3	180327713	180327713	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	180327713	180327713	T	C	SNP	TTC14	ENST00000296015	human	ensembl	74_37	+1	known	missense	c.1696	p.Y566H	0.922	NULL	pfam_TPR_1,superfamily_NA-bd_OB-fold,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Rbsml_prot_S1_RNA-bd_dom	-	no_errors	TTC14	HGNC	ENSG00000163728				306	0	0	255	15	5.55556
CCDC39	0	genome.wustl.edu	37	3	180364906	180364906	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	180364906	180364906	A	G	SNP	CCDC39	ENST00000442201	human	ensembl	74_37	-1	known	silent	c.1488	p.S496	0.013	NULL	superfamily_Prefoldin,superfamily_tRNA-bd_arm	-	no_errors	CCDC39	HGNC	ENSG00000145075				148	0	0	118	7	5.6
FXR1	0	genome.wustl.edu	37	3	180686004	180686004	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	180686004	180686004	G	A	SNP	FXR1	ENST00000357559	human	ensembl	74_37	+1	known	missense	c.1364	p.R455H	1.000	pfam_Frag_X_MRP_fam	pfam_Frag_X_MRP_fam,pfam_KH_dom_type_1,pfam_Agenet-like_dom,superfamily_NA-bd_OB-fold,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	FXR1	HGNC	ENSG00000114416				51	0	0	40	12	23.0769
ATP11B	0	genome.wustl.edu	37	3	182605474	182605474	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	182605474	182605474	T	C	SNP	ATP11B	ENST00000323116	human	ensembl	74_37	+1	known	missense	c.2816	p.V939A	0.989	tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP11B	HGNC	ENSG00000058063				171	1	0.581395	128	12	8.57143
MCF2L2	0	genome.wustl.edu	37	3	183013131	183013131	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	183013131	183013131	T	C	SNP	MCF2L2	ENST00000328913	human	ensembl	74_37	-1	known	silent	c.1632	p.S544	1.000	NULL	pfam_DH-domain,superfamily_DH-domain,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	MCF2L2	HGNC	ENSG00000053524				113	0	0	101	9	8.18182
KLHL6	0	genome.wustl.edu	37	3	183209848	183209848	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	183209848	183209848	C	T	SNP	KLHL6	ENST00000341319	human	ensembl	74_37	-1	known	missense	c.1733	p.C578Y	1.000	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL6	HGNC	ENSG00000172578				102	0	0	111	11	9.01639
KLHL24	0	genome.wustl.edu	37	3	183368392	183368392	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	183368392	183368392	T	C	SNP	KLHL24	ENST00000242810	human	ensembl	74_37	+1	known	missense	c.248	p.V83A	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL24	HGNC	ENSG00000114796				181	0	0	159	13	7.55814
KLHL24	0	genome.wustl.edu	37	3	183390214	183390214	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	183390214	183390214	A	G	SNP	KLHL24	ENST00000242810	human	ensembl	74_37	+1	known	missense	c.1544	p.Y515C	1.000	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL24	HGNC	ENSG00000114796				68	0	0	38	5	11.6279
YEATS2	0	genome.wustl.edu	37	3	183435470	183435470	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	183435470	183435470	T	C	SNP	YEATS2	ENST00000305135	human	ensembl	74_37	+1	known	silent	c.132	p.T44	0.997	NULL	pfam_YEATS,pfscan_YEATS	-	no_errors	YEATS2	HGNC	ENSG00000163872				176	0	0	138	12	8
YEATS2	0	genome.wustl.edu	37	3	183479352	183479352	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	183479352	183479352	A	G	SNP	YEATS2	ENST00000305135	human	ensembl	74_37	+1	known	missense	c.1714	p.K572E	1.000	NULL	pfam_YEATS,pfscan_YEATS	-	no_errors	YEATS2	HGNC	ENSG00000163872				225	0	0	199	16	7.44186
ABCC5	0	genome.wustl.edu	37	3	183700588	183700588	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	183700588	183700588	T	A	SNP	ABCC5	ENST00000334444	human	ensembl	74_37	-1	known	missense	c.799	p.N267Y	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC1_TM_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCC5	HGNC	ENSG00000114770				75	0	0	54	6	10
EIF2B5	0	genome.wustl.edu	37	3	183854437	183854437	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	183854437	183854437	A	G	SNP	EIF2B5	ENST00000273783	human	ensembl	74_37	+1	known	missense	c.233	p.Y78C	1.000	NULL	pfam_W2_domain,superfamily_ARM-type_fold,superfamily_Trimer_LpxA-like,smart_W2_domain	-	no_errors	EIF2B5	HGNC	ENSG00000145191				176	0	0	160	14	8.04598
ABCF3	0	genome.wustl.edu	37	3	183911336	183911336	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	183911336	183911336	G	A	SNP	ABCF3	ENST00000429586	human	ensembl	74_37	+1	known	silent	c.1980	p.V660	1.000	superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCF3	HGNC	ENSG00000161204				177	0	0	195	16	7.58294
ECE2	0	genome.wustl.edu	37	3	183976238	183976238	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	183976238	183976238	G	A	SNP	ECE2	ENST00000324557	human	ensembl	74_37	+1	known	missense	c.643	p.G215R	0.934	NULL	pfam_Methyltransf_11,pfam_Methyltransf_12	-	no_errors	ECE2	HGNC	ENSG00000145194				138	0	0	163	10	5.78035
PSMD2	0	genome.wustl.edu	37	3	184025236	184025236	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	184025236	184025236	C	T	SNP	PSMD2	ENST00000310118	human	ensembl	74_37	+1	known	missense	c.2126	p.T709I	1.000	superfamily_ARM-type_fold,pirsf_26S_Psome_Rpn1	pfam_Proteasome/cyclosome_rpt,superfamily_ARM-type_fold,pirsf_26S_Psome_Rpn1	-	no_errors	PSMD2	HGNC	ENSG00000175166				107	0	0	101	10	9.00901
EIF4G1	0	genome.wustl.edu	37	3	184049520	184049520	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	184049520	184049520	A	T	SNP	EIF4G1	ENST00000352767	human	ensembl	74_37	+1	known	missense	c.4421	p.N1474I	1.000	superfamily_ARM-type_fold	pfam_MIF4G-like_typ-3,pfam_Initiation_fac_eIF4g_MI,pfam_W2_domain,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3,smart_Initiation_fac_eIF4g_MI,smart_W2_domain	-	no_errors	EIF4G1	HGNC	ENSG00000114867				145	0	0	130	12	8.4507
FAM131A	0	genome.wustl.edu	37	3	184062678	184062678	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	184062678	184062678	C	T	SNP	FAM131A	ENST00000383847	human	ensembl	74_37	+1	known	missense	c.1021	p.R341W	0.001	NULL	NULL	-	no_errors	FAM131A	HGNC	ENSG00000175182				11	0	0	23	5	17.8571
CLCN2	0	genome.wustl.edu	37	3	184069837	184069837	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	184069837	184069837	A	G	SNP	CLCN2	ENST00000265593	human	ensembl	74_37	-1	known	silent	c.2379	p.A793	0.879	NULL	pfam_Cl-channel_volt-gated,pfam_CBS_dom,superfamily_Cl-channel_core,prints_Cl-channel_volt-gated,prints_Cl-channel-2	-	no_errors	CLCN2	HGNC	ENSG00000114859				160	0	0	181	11	5.72917
CLCN2	0	genome.wustl.edu	37	3	184075458	184075458	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	184075458	184075458	G	A	SNP	CLCN2	ENST00000265593	human	ensembl	74_37	-1	known	missense	c.722	p.A241V	1.000	pfam_Cl-channel_volt-gated,superfamily_Cl-channel_core	pfam_Cl-channel_volt-gated,pfam_CBS_dom,superfamily_Cl-channel_core,prints_Cl-channel_volt-gated,prints_Cl-channel-2	-	no_errors	CLCN2	HGNC	ENSG00000114859				83	0	0	82	9	9.89011
THPO	0	genome.wustl.edu	37	3	184090537	184090537	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	184090537	184090537	A	G	SNP	THPO	ENST00000204615	human	ensembl	74_37	-1	known	missense	c.826	p.S276P	0.001	NULL	pfam_EPO_TPO,superfamily_4_helix_cytokine-like_core,prints_Thrombopoeitin	-	no_errors	THPO	HGNC	ENSG00000090534				162	0	0	197	13	6.19048
EPHB3	0	genome.wustl.edu	37	3	184290963	184290963	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	184290963	184290963	C	T	SNP	EPHB3	ENST00000330394	human	ensembl	74_37	+1	known	silent	c.855	p.R285	0.938	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Growth_fac_rcpt_N_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHB3	HGNC	ENSG00000182580				52	0	0	54	4	6.89655
EPHB3	0	genome.wustl.edu	37	3	184298290	184298290	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	184298290	184298290	A	G	SNP	EPHB3	ENST00000330394	human	ensembl	74_37	+1	known	missense	c.2273	p.D758G	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHB3	HGNC	ENSG00000182580				104	0	0	114	11	8.8
SATB1	0	genome.wustl.edu	37	3	18456661	18456661	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	18456661	18456661	T	G	SNP	SATB1	ENST00000417717	human	ensembl	74_37	-1	known	missense	c.581	p.K194T	1.000	NULL	pfam_Hmoeo_CUT,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Hmoeo_CUT	-	no_errors	SATB1	HGNC	ENSG00000182568				109	0	0	86	8	8.51064
VPS8	0	genome.wustl.edu	37	3	184632771	184632771	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	184632771	184632771	G	A	SNP	VPS8	ENST00000287546	human	ensembl	74_37	+1	known	missense	c.2192	p.C731Y	1.000	superfamily_Quinonprotein_ADH-like_supfam	superfamily_Quinonprotein_ADH-like_supfam,superfamily_ARM-type_fold,smart_Znf_RING,pfscan_Znf_RING,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	VPS8	HGNC	ENSG00000156931				140	1	0.70922	105	8	7.07965
EHHADH	0	genome.wustl.edu	37	3	184922382	184922382	+	Silent	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	184922382	184922382	G	T	SNP	EHHADH	ENST00000231887	human	ensembl	74_37	-1	known	silent	c.732	p.P244	0.999	NULL	pfam_Crotonase_core_superfam,pfam_3-OHacyl-CoA_DH_NAD-bd,pfam_3HC_DH_C,superfamily_6-PGluconate_DH_C-like	-	no_errors	EHHADH	HGNC	ENSG00000113790				156	1	0.636943	165	18	9.83607
ETV5	0	genome.wustl.edu	37	3	185782253	185782253	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	185782253	185782253	C	T	SNP	ETV5	ENST00000537818	human	ensembl	74_37	-1	known	missense	c.1049	p.C350Y	1.000	pfam_ETS_PEA3_N	pfam_ETS_PEA3_N,pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	ETV5	HGNC	ENSG00000244405				152	0	0	131	10	7.0922
CRYGS	0	genome.wustl.edu	37	3	186256574	186256574	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	186256574	186256574	A	G	SNP	CRYGS	ENST00000307944	human	ensembl	74_37	-1	known	missense	c.448	p.Y150H	1.000	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	CRYGS	HGNC	ENSG00000213139				61	0	0	62	4	6.06061
FETUB	0	genome.wustl.edu	37	3	186364090	186364090	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	186364090	186364090	T	C	SNP	FETUB	ENST00000265029	human	ensembl	74_37	+1	known	silent	c.648	p.C216	0.341	pfam_Prot_inh_cystat,smart_Prot_inh_cystat	pfam_Prot_inh_cystat,smart_Prot_inh_cystat	-	no_errors	FETUB	HGNC	ENSG00000090512				261	0	0	201	19	8.63636
KNG1	0	genome.wustl.edu	37	3	186459531	186459531	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	186459531	186459531	G	A	SNP	KNG1	ENST00000265023	human	ensembl	74_37	+1	known	missense	c.1346	p.R449H	0.993	prints_Kininogen	pfam_Prot_inh_cystat,smart_Prot_inh_cystat,prints_Kininogen	-	no_errors	KNG1	HGNC	ENSG00000113889				50	0	0	43	4	8.51064
EIF4A2	0	genome.wustl.edu	37	3	186505288	186505288	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	186505288	186505288	G	A	SNP	EIF4A2	ENST00000440191	human	ensembl	74_37	+1	known	missense	c.917	p.G306D	1.000	pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_C,pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	EIF4A2	HGNC	ENSG00000156976				162	0	0	148	36	19.5652
LEPREL1	0	genome.wustl.edu	37	3	189690672	189690672	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	189690672	189690672	C	T	SNP	LEPREL1	ENST00000319332	human	ensembl	74_37	-1	known	missense	c.1690	p.A564T	1.000	smart_Pro_4_hyd_alph	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	LEPREL1	HGNC	ENSG00000090530				75	0	0	58	4	6.45161
LEPREL1	0	genome.wustl.edu	37	3	189690757	189690757	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	189690757	189690757	G	A	SNP	LEPREL1	ENST00000319332	human	ensembl	74_37	-1	known	silent	c.1605	p.S535	0.992	smart_Pro_4_hyd_alph	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	LEPREL1	HGNC	ENSG00000090530				64	0	0	41	4	8.88889
TMEM207	0	genome.wustl.edu	37	3	190158100	190158100	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	190158100	190158100	T	A	SNP	TMEM207	ENST00000354905	human	ensembl	74_37	-1	known	missense	c.237	p.R79S	0.000	NULL	NULL	-	no_errors	TMEM207	HGNC	ENSG00000198398				84	0	0	59	7	10.6061
IL1RAP	0	genome.wustl.edu	37	3	190341190	190341190	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	190341190	190341190	A	T	SNP	IL1RAP	ENST00000443369	human	ensembl	74_37	+1	known	missense	c.761	p.Y254F	1.000	smart_Ig_sub,pfscan_Ig-like_dom,prints_IL-1_rcpt_I/II-typ	pfam_TIR_dom,superfamily_TIR_dom,smart_Ig_sub,smart_TIR_dom,pfscan_TIR_dom,pfscan_Ig-like_dom,prints_IL-1_rcpt_I/II-typ	-	no_errors	IL1RAP	HGNC	ENSG00000196083				104	0	0	75	7	8.53659
IL1RAP	0	genome.wustl.edu	37	3	190366254	190366254	+	Silent	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	190366254	190366254	C	A	SNP	IL1RAP	ENST00000072516	human	ensembl	74_37	+1	known	silent	c.1473	p.A491	1.000	pfam_TIR_dom,superfamily_TIR_dom,smart_TIR_dom,pfscan_TIR_dom	pfam_TIR_dom,superfamily_TIR_dom,smart_Ig_sub,smart_TIR_dom,pfscan_TIR_dom,pfscan_Ig-like_dom,prints_IL-1_rcpt_I/II-typ	-	no_errors	IL1RAP	HGNC	ENSG00000196083				138	0	0	116	11	8.66142
OSTN	0	genome.wustl.edu	37	3	190930420	190930420	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	190930420	190930420	A	G	SNP	OSTN	ENST00000339051	human	ensembl	74_37	+1	known	silent	c.99	p.T33	0.962	pfam_Osteocrin	pfam_Osteocrin	-	no_errors	OSTN	HGNC	ENSG00000188729				41	0	0	30	4	11.7647
FGF12	0	genome.wustl.edu	37	3	192125880	192125880	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	192125880	192125880	C	T	SNP	FGF12	ENST00000454309	human	ensembl	74_37	-1	known	missense	c.133	p.V45I	1.000	NULL	pfam_Fibroblast_GF_fam,superfamily_Cytokine_IL1-like,smart_Fibroblast_GF_fam,prints_IL-1_fam/FGF_fam,prints_Fibroblast_GF_fam	-	no_errors	FGF12	HGNC	ENSG00000114279				122	0	0	134	28	17.284
MB21D2	0	genome.wustl.edu	37	3	192516331	192516331	+	Silent	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	192516331	192516331	T	A	SNP	MB21D2	ENST00000392452	human	ensembl	74_37	-1	known	silent	c.1320	p.P440	0.872	NULL	pfam_Mab-21_dom	-	no_errors	MB21D2	HGNC	ENSG00000180611				99	0	0	117	11	8.59375
ATP13A5	0	genome.wustl.edu	37	3	193039614	193039614	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	193039614	193039614	C	A	SNP	ATP13A5	ENST00000342358	human	ensembl	74_37	-1	known	missense	c.1771	p.A591S	0.995	superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,tigrfam_ATPase_P-typ_Cation_typ_V	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_Cation_typ_V,pfam_ATPase_P-typ_cation-transptr_N,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Cation_typ_V,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP13A5	HGNC	ENSG00000187527				64	0	0	55	5	8.33333
ATP13A5	0	genome.wustl.edu	37	3	193071938	193071938	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	193071938	193071938	A	G	SNP	ATP13A5	ENST00000342358	human	ensembl	74_37	-1	known	missense	c.584	p.I195T	1.000	pfam_ATPase_P-typ_cation-transptr_N,tigrfam_ATPase_P-typ_Cation_typ_V	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_Cation_typ_V,pfam_ATPase_P-typ_cation-transptr_N,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Cation_typ_V,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP13A5	HGNC	ENSG00000187527				113	0	0	78	10	11.3636
ATP13A4	0	genome.wustl.edu	37	3	193210730	193210730	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	193210730	193210730	A	G	SNP	ATP13A4	ENST00000342695	human	ensembl	74_37	-1	known	missense	c.509	p.L170S	0.988	pfam_ATPase_P-typ_cation-transptr_N,smart_ATPase_P-typ_cation-transptr_N,tigrfam_ATPase_P-typ_Cation_typ_V	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_Cation_typ_V,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Cation_typ_V,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP13A4	HGNC	ENSG00000127249				104	0	0	66	16	19.5122
KCNH8	0	genome.wustl.edu	37	3	19389261	19389261	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	19389261	19389261	T	C	SNP	KCNH8	ENST00000328405	human	ensembl	74_37	+1	known	silent	c.615	p.S205	0.799	NULL	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_2pore_dom_K_chnl_dom,pfam_PAS_fold_3,pfam_PAS_4,pfam_PAS_fold,superfamily_cNMP-bd-like,superfamily_PAS,superfamily_tRNA-bd_arm,smart_PAC,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,pfscan_PAS-assoc_C,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ELK,prints_K_chnl_volt-dep_ERG,prints_K_chnl_volt-dep_EAG,tigrfam_PAS	-	no_errors	KCNH8	HGNC	ENSG00000183960				142	0	0	103	8	7.20721
LRRC15	0	genome.wustl.edu	37	3	194080147	194080147	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	194080147	194080147	G	A	SNP	LRRC15	ENST00000439944	human	ensembl	74_37	-1	known	silent	c.1644	p.A548	0.009	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	LRRC15	HGNC	ENSG00000172061				59	0	0	70	16	18.6047
GP5	0	genome.wustl.edu	37	3	194118737	194118737	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	194118737	194118737	C	A	SNP	GP5	ENST00000323007	human	ensembl	74_37	-1	known	missense	c.275	p.G92V	0.095	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	GP5	HGNC	ENSG00000178732				118	0	0	114	7	5.78512
ATP13A3	0	genome.wustl.edu	37	3	194158135	194158135	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	194158135	194158135	A	G	SNP	ATP13A3	ENST00000256031	human	ensembl	74_37	-1	known	missense	c.1904	p.M635T	1.000	superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,tigrfam_ATPase_P-typ_Cation_typ_V,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_Cation_typ_V,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Cation_typ_V,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP13A3	HGNC	ENSG00000133657				90	0	0	98	15	13.2743
KCNH8	0	genome.wustl.edu	37	3	19554610	19554610	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	19554610	19554610	G	T	SNP	KCNH8	ENST00000328405	human	ensembl	74_37	+1	known	missense	c.2228	p.G743V	1.000	NULL	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_2pore_dom_K_chnl_dom,pfam_PAS_fold_3,pfam_PAS_4,pfam_PAS_fold,superfamily_cNMP-bd-like,superfamily_PAS,superfamily_tRNA-bd_arm,smart_PAC,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,pfscan_PAS-assoc_C,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ELK,prints_K_chnl_volt-dep_ERG,prints_K_chnl_volt-dep_EAG,tigrfam_PAS	-	no_errors	KCNH8	HGNC	ENSG00000183960				76	0	0	63	10	13.6986
KCNH8	0	genome.wustl.edu	37	3	19559491	19559491	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	19559491	19559491	T	A	SNP	KCNH8	ENST00000328405	human	ensembl	74_37	+1	known	missense	c.2544	p.D848E	0.980	NULL	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_2pore_dom_K_chnl_dom,pfam_PAS_fold_3,pfam_PAS_4,pfam_PAS_fold,superfamily_cNMP-bd-like,superfamily_PAS,superfamily_tRNA-bd_arm,smart_PAC,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,pfscan_PAS-assoc_C,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ELK,prints_K_chnl_volt-dep_ERG,prints_K_chnl_volt-dep_EAG,tigrfam_PAS	-	no_errors	KCNH8	HGNC	ENSG00000183960				117	0	0	95	9	8.65385
KCNH8	0	genome.wustl.edu	37	3	19575180	19575180	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	19575180	19575180	A	G	SNP	KCNH8	ENST00000328405	human	ensembl	74_37	+1	known	silent	c.2913	p.Q971	0.999	NULL	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_2pore_dom_K_chnl_dom,pfam_PAS_fold_3,pfam_PAS_4,pfam_PAS_fold,superfamily_cNMP-bd-like,superfamily_PAS,superfamily_tRNA-bd_arm,smart_PAC,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,pfscan_PAS-assoc_C,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ELK,prints_K_chnl_volt-dep_ERG,prints_K_chnl_volt-dep_EAG,tigrfam_PAS	-	no_errors	KCNH8	HGNC	ENSG00000183960				122	0	0	107	7	6.14035
TM4SF19	0	genome.wustl.edu	37	3	196050829	196050829	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	196050829	196050829	G	A	SNP	TM4SF19	ENST00000446879	human	ensembl	74_37	-1	putative	missense	c.485	p.A162V	1.000	NULL	pfam_L6_membrane	-	no_errors	TM4SF19	HGNC	ENSG00000145107				54	0	0	55	11	16.6667
FBXO45	0	genome.wustl.edu	37	3	196304328	196304328	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	196304328	196304328	G	A	SNP	FBXO45	ENST00000311630	human	ensembl	74_37	+1	known	missense	c.323	p.R108H	1.000	superfamily_ConA-like_lec_gl_sf,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_F-box_dom,superfamily_ConA-like_lec_gl_sf,superfamily_F-box_dom,smart_F-box_dom,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_F-box_dom	-	no_errors	FBXO45	HGNC	ENSG00000174013				50	0	0	40	4	9.09091
SENP5	0	genome.wustl.edu	37	3	196612777	196612777	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	196612777	196612777	G	A	SNP	SENP5	ENST00000323460	human	ensembl	74_37	+1	known	missense	c.725	p.R242Q	1.000	NULL	pfam_Peptidase_C48,pfscan_Peptidase_C48	-	no_errors	SENP5	HGNC	ENSG00000119231				69	0	0	78	5	6.0241
SENP5	0	genome.wustl.edu	37	3	196626927	196626927	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	196626927	196626927	T	C	SNP	SENP5	ENST00000323460	human	ensembl	74_37	+1	known	silent	c.1752	p.N584	1.000	pfam_Peptidase_C48,pfscan_Peptidase_C48	pfam_Peptidase_C48,pfscan_Peptidase_C48	-	no_errors	SENP5	HGNC	ENSG00000119231				86	0	0	65	11	14.4737
PIGZ	0	genome.wustl.edu	37	3	196674693	196674693	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	196674693	196674693	C	T	SNP	PIGZ	ENST00000412723	human	ensembl	74_37	-1	known	missense	c.1075	p.A359T	0.036	pfam_GPI_mannosylTrfase	pfam_GPI_mannosylTrfase	-	no_errors	PIGZ	HGNC	ENSG00000119227				70	0	0	73	4	5.19481
MFI2	0	genome.wustl.edu	37	3	196751234	196751234	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	196751234	196751234	G	A	SNP	MFI2	ENST00000296350	human	ensembl	74_37	-1	known	missense	c.427	p.P143S	1.000	pfam_Transferrin_fam,smart_Transferrin_fam,pirsf_Transferrin,prints_Transferrin_fam	pfam_Transferrin_fam,smart_Transferrin_fam,pirsf_Transferrin,prints_Transferrin_fam	-	no_errors	MFI2	HGNC	ENSG00000163975				67	0	0	74	6	7.5
IQCG	0	genome.wustl.edu	37	3	197665523	197665523	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	197665523	197665523	G	A	SNP	IQCG	ENST00000265239	human	ensembl	74_37	-1	known	silent	c.411	p.G137	0.018	NULL	pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,pfscan_IQ_motif_EF-hand-BS	-	no_errors	IQCG	HGNC	ENSG00000114473				394	0	0	284	37	11.5265
LMLN	0	genome.wustl.edu	37	3	197707271	197707271	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	197707271	197707271	T	G	SNP	LMLN	ENST00000330198	human	ensembl	74_37	+1	known	missense	c.624	p.D208E	0.995	pfam_Peptidase_M8	pfam_Peptidase_M8	-	no_errors	LMLN	HGNC	ENSG00000185621				189	0	0	159	10	5.91716
EFHB	0	genome.wustl.edu	37	3	19959879	19959879	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	19959879	19959879	G	T	SNP	EFHB	ENST00000295824	human	ensembl	74_37	-1	known	missense	c.1022	p.P341H	0.962	NULL	pfam_SPARC/Testican_Ca-bd-dom,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	EFHB	HGNC	ENSG00000163576				149	0	0	131	11	7.74648
RAB5A	0	genome.wustl.edu	37	3	20017562	20017562	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	20017562	20017562	T	A	SNP	RAB5A	ENST00000273047	human	ensembl	74_37	+1	known	missense	c.339	p.N113K	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB5A	HGNC	ENSG00000144566				68	0	0	59	6	9.23077
KAT2B	0	genome.wustl.edu	37	3	20164248	20164248	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	20164248	20164248	C	T	SNP	KAT2B	ENST00000263754	human	ensembl	74_37	+1	known	silent	c.1365	p.N455	0.991	pirsf_Hist_acetylase_PCAF	pirsf_Hist_acetylase_PCAF,pfam_PCAF_N,pfam_Bromodomain,pfam_GNAT_dom,superfamily_Bromodomain,superfamily_Acyl_CoA_acyltransferase,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain,pfscan_GNAT_dom	-	no_errors	KAT2B	HGNC	ENSG00000114166				61	0	0	55	4	6.77966
NKIRAS1	0	genome.wustl.edu	37	3	23952357	23952357	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	23952357	23952357	T	A	SNP	NKIRAS1	ENST00000388759	human	ensembl	74_37	-1	known	missense	c.39	p.L13F	0.084	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Ras,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Ras,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	NKIRAS1	HGNC	ENSG00000197885				40	0	0	39	6	13.3333
NR1D2	0	genome.wustl.edu	37	3	24003739	24003739	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	24003739	24003739	T	A	SNP	NR1D2	ENST00000312521	human	ensembl	74_37	+1	known	missense	c.789	p.D263E	1.000	NULL	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	NR1D2	HGNC	ENSG00000174738				57	0	0	56	4	6.66667
RARB	0	genome.wustl.edu	37	3	25215993	25215993	+	Silent	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	25215993	25215993	A	T	SNP	RARB	ENST00000404969	human	ensembl	74_37	+1	known	silent	c.105	p.G35	1.000	NULL	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Retinoic_acid_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Nuc_orph_rcpt,prints_Retinoid-X_rcpt/HNF4	-	no_errors	RARB	HGNC	ENSG00000077092				63	0	0	76	10	11.6279
RARB	0	genome.wustl.edu	37	3	25502818	25502818	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	25502818	25502818	T	A	SNP	RARB	ENST00000404969	human	ensembl	74_37	+1	known	missense	c.313	p.C105S	1.000	pfam_Znf_hrmn_rcpt,smart_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt,prints_Znf_hrmn_rcpt	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Retinoic_acid_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Nuc_orph_rcpt,prints_Retinoid-X_rcpt/HNF4	-	no_errors	RARB	HGNC	ENSG00000077092				104	0	0	104	28	21.2121
TOP2B	0	genome.wustl.edu	37	3	25641012	25641012	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	25641012	25641012	G	A	SNP	TOP2B	ENST00000264331	human	ensembl	74_37	-1	known	nonsense	c.4624	p.R1542*	1.000	pfam_DTHCT	pfam_Topo_IIA_A/C,pfam_Topo_IIA_bsu_dom2,pfam_DTHCT,pfam_HATPase_ATP-bd,superfamily_Topo_IIA_like_dom,superfamily_HATPase_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,smart_Topo_IIA,smart_Topo_IIA_A/C,prints_TopoII_euk,prints_Topo_IIA,prints_Transcrpt_fac_NFYB/HAP3	-	no_errors	TOP2B	HGNC	ENSG00000077097				45	0	0	37	5	11.9048
NEK10	0	genome.wustl.edu	37	3	27204208	27204208	+	Silent	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	27204208	27204208	T	A	SNP	NEK10	ENST00000383771	human	ensembl	74_37	-1	known	silent	c.789	p.G263	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,pfscan_Prot_kinase_dom	-	no_errors	NEK10	HGNC	ENSG00000163491				80	0	0	64	4	5.88235
CMC1	0	genome.wustl.edu	37	3	28357873	28357873	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	28357873	28357873	C	A	SNP	CMC1	ENST00000466830	human	ensembl	74_37	+1	known	nonsense	c.159	p.C53*	1.000	pfam_Cyt_c_biogenesis_Cmc1-like	pfam_Cyt_c_biogenesis_Cmc1-like	-	no_errors	CMC1	HGNC	ENSG00000187118				55	0	0	36	2	5.26316
ZCWPW2	0	genome.wustl.edu	37	3	28566019	28566019	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	28566019	28566019	T	C	SNP	ZCWPW2	ENST00000383768	human	ensembl	74_37	+1	known	missense	c.911	p.L304S	0.269	NULL	pfam_Znf_CW,pfam_PWWP_dom,pfscan_PWWP_dom,pfscan_Znf_CW	-	no_errors	ZCWPW2	HGNC	ENSG00000206559				285	0	0	229	15	6.14754
TGFBR2	0	genome.wustl.edu	37	3	30691806	30691806	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	30691806	30691806	A	G	SNP	TGFBR2	ENST00000359013	human	ensembl	74_37	+1	known	missense	c.383	p.D128G	1.000	pirsf_Transform_growth_fac-b_typ-2,pfam_Transforming_GF_b_rcpt_2_ecto	pirsf_Transform_growth_fac-b_typ-2,pfam_Transforming_GF_b_rcpt_2_ecto,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_TGFB_receptor,pfscan_Prot_kinase_dom	-	no_errors	TGFBR2	HGNC	ENSG00000163513				101	0	0	99	8	7.47664
TGFBR2	0	genome.wustl.edu	37	3	30713436	30713436	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	30713436	30713436	G	A	SNP	TGFBR2	ENST00000359013	human	ensembl	74_37	+1	known	missense	c.836	p.R279H	1.000	pirsf_Transform_growth_fac-b_typ-2,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Transform_growth_fac-b_typ-2,pfam_Transforming_GF_b_rcpt_2_ecto,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_TGFB_receptor,pfscan_Prot_kinase_dom	-	no_errors	TGFBR2	HGNC	ENSG00000163513				99	0	0	71	22	23.6559
CNTN4	0	genome.wustl.edu	37	3	3081933	3081933	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	3081933	3081933	G	A	SNP	CNTN4	ENST00000397461	human	ensembl	74_37	+1	known	silent	c.2376	p.T792	0.667	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Fibronectin_type3,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CNTN4	HGNC	ENSG00000144619				93	0	0	64	14	17.9487
IL5RA	0	genome.wustl.edu	37	3	3118291	3118291	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	3118291	3118291	A	G	SNP	IL5RA	ENST00000256452	human	ensembl	74_37	-1	known	silent	c.1015	p.L339	0.000	NULL	pfam_IL-6_rcpt_alpha-bd,superfamily_Fibronectin_type3	-	no_errors	IL5RA	HGNC	ENSG00000091181				77	0	0	56	4	6.66667
STT3B	0	genome.wustl.edu	37	3	31621492	31621492	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	31621492	31621492	T	C	SNP	STT3B	ENST00000295770	human	ensembl	74_37	+1	known	silent	c.615	p.I205	1.000	pfam_Oligo_trans_STT3	pfam_Oligo_trans_STT3	-	no_errors	STT3B	HGNC	ENSG00000163527				187	0	0	152	9	5.59006
OSBPL10	0	genome.wustl.edu	37	3	31710251	31710251	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	31710251	31710251	T	C	SNP	OSBPL10	ENST00000396556	human	ensembl	74_37	-1	known	missense	c.1979	p.N660S	1.000	pfam_Oxysterol-bd	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL10	HGNC	ENSG00000144645				139	0	0	114	8	6.55738
TRNT1	0	genome.wustl.edu	37	3	3188145	3188145	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	3188145	3188145	G	A	SNP	TRNT1	ENST00000251607	human	ensembl	74_37	+1	known	missense	c.640	p.D214N	1.000	NULL	pfam_PolA_pol_head_dom	-	no_errors	TRNT1	HGNC	ENSG00000072756				80	0	0	65	6	8.4507
CRBN	0	genome.wustl.edu	37	3	3192623	3192623	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	3192623	3192623	G	A	SNP	CRBN	ENST00000231948	human	ensembl	74_37	-1	known	nonsense	c.1255	p.R419*	1.000	NULL	pfam_Pept_S16_N,superfamily_PUA-like_domain,smart_Pept_S16_N	-	no_errors	CRBN	HGNC	ENSG00000113851				51	0	0	40	5	11.1111
CRBN	0	genome.wustl.edu	37	3	3192649	3192649	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	3192649	3192649	G	A	SNP	CRBN	ENST00000231948	human	ensembl	74_37	-1	known	missense	c.1229	p.S410L	0.972	NULL	pfam_Pept_S16_N,superfamily_PUA-like_domain,smart_Pept_S16_N	-	no_errors	CRBN	HGNC	ENSG00000113851				49	0	0	43	5	10.4167
CMTM7	0	genome.wustl.edu	37	3	32483359	32483359	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	32483359	32483359	G	A	SNP	CMTM7	ENST00000334983	human	ensembl	74_37	+1	known	missense	c.187	p.V63M	0.983	pfam_Marvel	pfam_Marvel	-	no_errors	CMTM7	HGNC	ENSG00000153551				117	0	0	96	28	22.5806
CMTM7	0	genome.wustl.edu	37	3	32483389	32483389	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	32483389	32483389	G	A	SNP	CMTM7	ENST00000334983	human	ensembl	74_37	+1	known	missense	c.217	p.A73T	0.966	pfam_Marvel	pfam_Marvel	-	no_errors	CMTM7	HGNC	ENSG00000153551				131	0	0	118	8	6.34921
CMTM7	0	genome.wustl.edu	37	3	32493939	32493939	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	32493939	32493939	A	C	SNP	CMTM7	ENST00000334983	human	ensembl	74_37	+1	known	missense	c.488	p.K163T	1.000	NULL	pfam_Marvel	-	no_errors	CMTM7	HGNC	ENSG00000153551				245	0	0	214	22	9.32203
CNOT10	0	genome.wustl.edu	37	3	32769230	32769230	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	32769230	32769230	T	C	SNP	CNOT10	ENST00000454516	human	ensembl	74_37	+1	known	silent	c.1263	p.C421	1.000	smart_TPR_repeat	pfam_TPR_1,smart_TPR_repeat	-	no_errors	CNOT10	HGNC	ENSG00000182973				84	0	0	56	11	16.4179
CNOT10	0	genome.wustl.edu	37	3	32804346	32804346	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	32804346	32804346	C	T	SNP	CNOT10	ENST00000454516	human	ensembl	74_37	+1	known	nonsense	c.2011	p.Q671*	1.000	NULL	pfam_TPR_1,smart_TPR_repeat	-	no_errors	CNOT10	HGNC	ENSG00000182973				90	0	0	67	4	5.6338
TRIM71	0	genome.wustl.edu	37	3	32859684	32859684	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	32859684	32859684	A	T	SNP	TRIM71	ENST00000383763	human	ensembl	74_37	+1	known	missense	c.112	p.T38S	1.000	smart_Znf_RING,pfscan_Znf_RING	pfam_NHL_repeat,pfam_Filamin/ABP280_repeat-like,pfam_Znf_B-box,superfamily_Ig_E-set,smart_Znf_RING,smart_Znf_B-box,smart_Filamin,pfscan_Filamin/ABP280_repeat-like,pfscan_NHL_repeat_subgr,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM71	HGNC	ENSG00000206557				29	0	0	26	3	10.3448
TRIM71	0	genome.wustl.edu	37	3	32859686	32859686	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	32859686	32859686	G	A	SNP	TRIM71	ENST00000383763	human	ensembl	74_37	+1	known	silent	c.114	p.T38	1.000	smart_Znf_RING,pfscan_Znf_RING	pfam_NHL_repeat,pfam_Filamin/ABP280_repeat-like,pfam_Znf_B-box,superfamily_Ig_E-set,smart_Znf_RING,smart_Znf_B-box,smart_Filamin,pfscan_Filamin/ABP280_repeat-like,pfscan_NHL_repeat_subgr,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM71	HGNC	ENSG00000206557				28	0	0	23	4	14.8148
FBXL2	0	genome.wustl.edu	37	3	33425581	33425581	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	33425581	33425581	G	A	SNP	FBXL2	ENST00000484457	human	ensembl	74_37	+1	known	missense	c.1052	p.C351Y	1.000	NULL	pfam_Leu-rich_rpt,pfam_F-box_dom,smart_F-box_dom,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_F-box_dom	-	no_errors	FBXL2	HGNC	ENSG00000153558				51	0	0	50	8	13.7931
CLASP2	0	genome.wustl.edu	37	3	33725942	33725942	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	33725942	33725942	C	T	SNP	CLASP2	ENST00000399362	human	ensembl	74_37	-1	known	missense	c.553	p.D185N	1.000	pfam_CLASP_N_dom,pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	pfam_CLASP_N_dom,pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	CLASP2	HGNC	ENSG00000163539				220	0	0	171	18	9.52381
PDCD6IP	0	genome.wustl.edu	37	3	33866819	33866819	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	33866819	33866819	A	T	SNP	PDCD6IP	ENST00000457054	human	ensembl	74_37	+1	known	missense	c.603	p.L201F	1.000	pfam_BRO1_dom,pfscan_BRO1_dom	pfam_BRO1_dom,pfscan_BRO1_dom	-	no_errors	PDCD6IP	HGNC	ENSG00000170248				140	0	0	83	22	20.9524
PDCD6IP	0	genome.wustl.edu	37	3	33905536	33905536	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	33905536	33905536	C	A	SNP	PDCD6IP	ENST00000457054	human	ensembl	74_37	+1	known	missense	c.2174	p.P725H	1.000	NULL	pfam_BRO1_dom,pfscan_BRO1_dom	-	no_errors	PDCD6IP	HGNC	ENSG00000170248				116	0	0	87	8	8.42105
STAC	0	genome.wustl.edu	37	3	36422210	36422210	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	36422210	36422210	G	A	SNP	STAC	ENST00000273183	human	ensembl	74_37	+1	known	silent	c.75	p.P25	1.000	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_SH3_domain,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_SH3_domain,pfscan_SH3_domain,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_Spectrin_alpha_SH3,prints_SH3_domain	-	no_errors	STAC	HGNC	ENSG00000144681				33	0	0	14	9	39.1304
STAC	0	genome.wustl.edu	37	3	36547271	36547271	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	36547271	36547271	A	G	SNP	STAC	ENST00000273183	human	ensembl	74_37	+1	known	missense	c.865	p.T289A	1.000	superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_Spectrin_alpha_SH3,prints_SH3_domain	pfam_SH3_domain,pfam_SH3_2,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_SH3_domain,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_SH3_domain,pfscan_SH3_domain,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_Spectrin_alpha_SH3,prints_SH3_domain	-	no_errors	STAC	HGNC	ENSG00000144681				90	0	0	75	4	5.06329
DCLK3	0	genome.wustl.edu	37	3	36779103	36779103	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	36779103	36779103	C	T	SNP	DCLK3	ENST00000416516	human	ensembl	74_37	-1	known	missense	c.1048	p.A350T	0.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	DCLK3	HGNC	ENSG00000163673				96	0	0	89	18	16.8224
TRANK1	0	genome.wustl.edu	37	3	36872603	36872603	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	36872603	36872603	A	G	SNP	TRANK1	ENST00000429976	human	ensembl	74_37	-1	known	missense	c.8339	p.L2780P	0.114	NULL	pfam_UvrD-like_ATP-bd,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_TPR_repeat,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR-contain_dom	-	no_errors	TRANK1	HGNC	ENSG00000168016				128	0	0	139	10	6.71141
TRANK1	0	genome.wustl.edu	37	3	36873305	36873305	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	36873305	36873305	C	T	SNP	TRANK1	ENST00000429976	human	ensembl	74_37	-1	known	missense	c.7637	p.R2546Q	1.000	NULL	pfam_UvrD-like_ATP-bd,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_TPR_repeat,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR-contain_dom	-	no_errors	TRANK1	HGNC	ENSG00000168016				72	0	0	84	7	7.69231
TRANK1	0	genome.wustl.edu	37	3	36893684	36893684	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	36893684	36893684	G	A	SNP	TRANK1	ENST00000429976	human	ensembl	74_37	-1	known	nonsense	c.4570	p.R1524*	0.011	superfamily_P-loop_NTPase	pfam_UvrD-like_ATP-bd,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_TPR_repeat,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR-contain_dom	-	no_errors	TRANK1	HGNC	ENSG00000168016				65	0	0	51	12	19.0476
EPM2AIP1	0	genome.wustl.edu	37	3	37034495	37034495	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	37034495	37034495	C	T	SNP	EPM2AIP1	ENST00000322716	human	ensembl	74_37	-1	known	missense	c.74	p.R25H	0.975	NULL	NULL	-	no_errors	EPM2AIP1	HGNC	ENSG00000178567				76	0	0	73	14	16.092
LRRFIP2	0	genome.wustl.edu	37	3	37095362	37095362	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	37095362	37095362	C	T	SNP	LRRFIP2	ENST00000336686	human	ensembl	74_37	-1	known	missense	c.2146	p.A716T	1.000	NULL	pfam_Leu-rich_rep_flightless-int_pr,superfamily_bHLH_dom,superfamily_Prefoldin	-	no_errors	LRRFIP2	HGNC	ENSG00000093167				124	0	0	103	10	8.84956
ITGA9	0	genome.wustl.edu	37	3	37845374	37845374	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	37845374	37845374	G	A	SNP	ITGA9	ENST00000264741	human	ensembl	74_37	+1	known	missense	c.2950	p.A984T	1.000	NULL	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA9	HGNC	ENSG00000144668				82	0	0	79	8	9.1954
VILL	0	genome.wustl.edu	37	3	38042991	38042991	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	38042991	38042991	G	T	SNP	VILL	ENST00000283713	human	ensembl	74_37	+1	known	missense	c.1227	p.K409N	0.210	pfam_Gelsolin_dom,smart_Villin/Gelsolin	pfam_Gelsolin_dom,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Villin/Gelsolin,smart_Villin_headpiece,pfscan_Villin_headpiece,prints_Villin/Gelsolin	-	no_errors	VILL	HGNC	ENSG00000136059				66	0	0	61	5	7.57576
DLEC1	0	genome.wustl.edu	37	3	38080868	38080868	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	38080868	38080868	A	G	SNP	DLEC1	ENST00000346219	human	ensembl	74_37	+1	known	missense	c.152	p.Y51C	0.001	NULL	superfamily_PapD-like	-	no_errors	DLEC1	HGNC	ENSG00000008226				59	0	0	67	6	8.21918
DLEC1	0	genome.wustl.edu	37	3	38125678	38125678	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	38125678	38125678	G	A	SNP	DLEC1	ENST00000346219	human	ensembl	74_37	+1	known	silent	c.1203	p.T401	0.000	NULL	superfamily_PapD-like	-	no_errors	DLEC1	HGNC	ENSG00000008226				72	0	0	53	6	10.1695
DLEC1	0	genome.wustl.edu	37	3	38153716	38153716	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	38153716	38153716	T	C	SNP	DLEC1	ENST00000346219	human	ensembl	74_37	+1	known	missense	c.3530	p.M1177T	0.435	NULL	superfamily_PapD-like	-	no_errors	DLEC1	HGNC	ENSG00000008226				107	0	0	125	17	11.9718
DLEC1	0	genome.wustl.edu	37	3	38158779	38158779	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	38158779	38158779	C	T	SNP	DLEC1	ENST00000346219	human	ensembl	74_37	+1	known	silent	c.4386	p.Y1462	0.040	NULL	superfamily_PapD-like	-	no_errors	DLEC1	HGNC	ENSG00000008226				28	0	0	29	4	12.1212
ACAA1	0	genome.wustl.edu	37	3	38173487	38173487	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	38173487	38173487	C	T	SNP	ACAA1	ENST00000418880	human	ensembl	74_37	-1	known	missense	c.275	p.R92Q	0.989	NULL	pfam_Thiolase_N,superfamily_Thiolase-like	-	no_errors	ACAA1	HGNC	ENSG00000060971				59	0	0	62	9	12.6761
OXSR1	0	genome.wustl.edu	37	3	38292940	38292940	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	38292940	38292940	C	T	SNP	OXSR1	ENST00000311806	human	ensembl	74_37	+1	known	silent	c.1422	p.V474	0.536	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	OXSR1	HGNC	ENSG00000172939				277	0	0	232	25	9.72763
XYLB	0	genome.wustl.edu	37	3	38415972	38415972	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	38415972	38415972	A	T	SNP	XYLB	ENST00000207870	human	ensembl	74_37	+1	known	missense	c.867	p.R289S	0.999	NULL	pfam_Carb_kinase_FGGY_C,pfam_Carb_kinase_FGGY_N	-	no_errors	XYLB	HGNC	ENSG00000093217				68	0	0	73	11	13.0952
ACVR2B	0	genome.wustl.edu	37	3	38523762	38523762	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	38523762	38523762	G	A	SNP	ACVR2B	ENST00000352511	human	ensembl	74_37	+1	known	missense	c.1148	p.R383H	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_TGFB_receptor	-	no_errors	ACVR2B	HGNC	ENSG00000114739				39	0	0	30	6	16.6667
SCN5A	0	genome.wustl.edu	37	3	38591817	38591817	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	38591817	38591817	C	T	SNP	SCN5A	ENST00000333535	human	ensembl	74_37	-1	known	missense	c.6046	p.V2016M	0.991	NULL	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,prints_Na_channel_a5su,prints_Na_channel_asu	-	no_errors	SCN5A	HGNC	ENSG00000183873				116	1	0.854701	105	24	18.6047
SCN5A	0	genome.wustl.edu	37	3	38596019	38596019	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	38596019	38596019	A	T	SNP	SCN5A	ENST00000333535	human	ensembl	74_37	-1	known	missense	c.4564	p.F1522I	1.000	NULL	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,prints_Na_channel_a5su,prints_Na_channel_asu	-	no_errors	SCN5A	HGNC	ENSG00000183873				112	0	0	107	10	8.54701
SCN5A	0	genome.wustl.edu	37	3	38649682	38649682	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	38649682	38649682	T	C	SNP	SCN5A	ENST00000333535	human	ensembl	74_37	-1	known	missense	c.958	p.T320A	0.926	pfam_Ion_trans_dom,prints_Na_channel_a5su	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,prints_Na_channel_a5su,prints_Na_channel_asu	-	no_errors	SCN5A	HGNC	ENSG00000183873				109	1	0.909091	117	11	8.59375
SCN10A	0	genome.wustl.edu	37	3	38753796	38753796	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	38753796	38753796	A	G	SNP	SCN10A	ENST00000449082	human	ensembl	74_37	-1	known	silent	c.3945	p.D1315	0.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN10A	HGNC	ENSG00000185313				138	0	0	147	11	6.96203
SCN10A	0	genome.wustl.edu	37	3	38798267	38798267	+	Silent	SNP	G	G	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	38798267	38798267	G	C	SNP	SCN10A	ENST00000449082	human	ensembl	74_37	-1	known	silent	c.1188	p.V396	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN10A	HGNC	ENSG00000185313				160	0	0	141	33	18.9655
LRRN1	0	genome.wustl.edu	37	3	3887314	3887314	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	3887314	3887314	G	A	SNP	LRRN1	ENST00000319331	human	ensembl	74_37	+1	known	missense	c.989	p.R330H	0.997	smart_Leu-rich_rpt_typical-subtyp	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	LRRN1	HGNC	ENSG00000175928				87	0	0	56	15	21.1268
LRRN1	0	genome.wustl.edu	37	3	3887411	3887411	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	3887411	3887411	T	A	SNP	LRRN1	ENST00000319331	human	ensembl	74_37	+1	known	missense	c.1086	p.N362K	1.000	NULL	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	LRRN1	HGNC	ENSG00000175928				95	0	0	100	8	7.40741
SCN11A	0	genome.wustl.edu	37	3	38908837	38908837	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	38908837	38908837	T	A	SNP	SCN11A	ENST00000302328	human	ensembl	74_37	-1	known	missense	c.3926	p.D1309V	1.000	NULL	pfam_Ion_trans_dom,pfam_Na_trans_assoc,prints_Na_channel_asu	-	no_errors	SCN11A	HGNC	ENSG00000168356				113	0	0	72	6	7.69231
SCN11A	0	genome.wustl.edu	37	3	38913112	38913112	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	38913112	38913112	G	T	SNP	SCN11A	ENST00000302328	human	ensembl	74_37	-1	known	missense	c.3583	p.L1195M	0.850	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,prints_Na_channel_asu	-	no_errors	SCN11A	HGNC	ENSG00000168356				50	0	0	55	4	6.77966
GORASP1	0	genome.wustl.edu	37	3	39144266	39144266	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	39144266	39144266	A	G	SNP	GORASP1	ENST00000319283	human	ensembl	74_37	-1	known	missense	c.251	p.V84A	1.000	pfam_GRASP55/65_PDZ,superfamily_PDZ	pfam_GRASP55/65_PDZ,superfamily_PDZ	-	no_errors	GORASP1	HGNC	ENSG00000114745				122	0	0	101	28	21.7054
XIRP1	0	genome.wustl.edu	37	3	39228564	39228564	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	39228564	39228564	G	A	SNP	XIRP1	ENST00000340369	human	ensembl	74_37	-1	known	silent	c.2373	p.L791	1.000	NULL	pfam_Actin-binding_Xin_repeat	-	no_errors	XIRP1	HGNC	ENSG00000168334				51	0	0	66	12	15.3846
XIRP1	0	genome.wustl.edu	37	3	39230227	39230227	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	39230227	39230227	G	A	SNP	XIRP1	ENST00000340369	human	ensembl	74_37	-1	known	missense	c.710	p.T237M	0.998	NULL	pfam_Actin-binding_Xin_repeat	-	no_errors	XIRP1	HGNC	ENSG00000168334				105	0	0	100	7	6.54206
XIRP1	0	genome.wustl.edu	37	3	39230238	39230238	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	39230238	39230238	C	A	SNP	XIRP1	ENST00000340369	human	ensembl	74_37	-1	known	missense	c.699	p.K233N	1.000	NULL	pfam_Actin-binding_Xin_repeat	-	no_errors	XIRP1	HGNC	ENSG00000168334				110	0	0	100	8	7.40741
CX3CR1	0	genome.wustl.edu	37	3	39307504	39307504	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	39307504	39307504	A	G	SNP	CX3CR1	ENST00000358309	human	ensembl	74_37	-1	known	missense	c.593	p.M198T	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Chemokine_CX3CR1,prints_GPCR_Rhodpsn,prints_Duffy_chemokine_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Chemokine_CX3CR1,prints_GPCR_Rhodpsn,prints_Chemokine_rcpt,prints_Duffy_chemokine_rcpt,prints_Chemokine_CXCR4	-	no_errors	CX3CR1	HGNC	ENSG00000168329				114	0	0	87	6	6.45161
SLC25A38	0	genome.wustl.edu	37	3	39433000	39433000	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	39433000	39433000	C	T	SNP	SLC25A38	ENST00000273158	human	ensembl	74_37	+1	known	silent	c.345	p.F115	0.982	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	SLC25A38	HGNC	ENSG00000144659				389	1	0.25641	324	80	19.802
ENTPD3	0	genome.wustl.edu	37	3	40456320	40456320	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	40456320	40456320	A	G	SNP	ENTPD3	ENST00000301825	human	ensembl	74_37	+1	known	missense	c.586	p.N196D	1.000	pfam_GDA1_CD39_NTPase	pfam_GDA1_CD39_NTPase	-	no_errors	ENTPD3	HGNC	ENSG00000168032				227	0	0	178	18	9.18367
ULK4	0	genome.wustl.edu	37	3	41607557	41607557	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	41607557	41607557	A	G	SNP	ULK4	ENST00000301831	human	ensembl	74_37	-1	known	missense	c.3185	p.V1062A	0.994	superfamily_ARM-type_fold	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	ULK4	HGNC	ENSG00000168038				79	0	0	63	6	8.69565
VIPR1	0	genome.wustl.edu	37	3	42576474	42576474	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	42576474	42576474	G	A	SNP	VIPR1	ENST00000325123	human	ensembl	74_37	+1	known	missense	c.1018	p.A340T	1.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_VIP_rcpt_1,prints_GPCR_2_secretin-like,prints_GPCR_2_VIP_rcpt	-	no_errors	VIPR1	HGNC	ENSG00000114812				57	0	0	61	4	6.15385
VIPR1	0	genome.wustl.edu	37	3	42577688	42577688	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	42577688	42577688	G	A	SNP	VIPR1	ENST00000325123	human	ensembl	74_37	+1	known	missense	c.1289	p.C430Y	1.000	prints_GPCR_2_VIP_rcpt_1	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_VIP_rcpt_1,prints_GPCR_2_secretin-like,prints_GPCR_2_VIP_rcpt	-	no_errors	VIPR1	HGNC	ENSG00000114812				22	0	0	14	4	22.2222
NKTR	0	genome.wustl.edu	37	3	42679032	42679032	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	42679032	42679032	C	T	SNP	NKTR	ENST00000232978	human	ensembl	74_37	+1	known	silent	c.1836	p.D612	1.000	NULL	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	NKTR	HGNC	ENSG00000114857				220	0	0	145	48	24.8705
CYP8B1	0	genome.wustl.edu	37	3	42916705	42916705	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	42916705	42916705	A	T	SNP	CYP8B1	ENST00000316161	human	ensembl	74_37	-1	known	missense	c.604	p.L202I	0.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I	-	no_errors	CYP8B1	HGNC	ENSG00000180432				71	0	0	66	5	7.04225
ZNF662	0	genome.wustl.edu	37	3	42956105	42956105	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	42956105	42956105	T	C	SNP	ZNF662	ENST00000328199	human	ensembl	74_37	+1	known	silent	c.618	p.G206	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF662	HGNC	ENSG00000182983				75	0	0	52	5	8.77193
SNRK	0	genome.wustl.edu	37	3	43344905	43344905	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	43344905	43344905	G	A	SNP	SNRK	ENST00000296088	human	ensembl	74_37	+1	known	silent	c.210	p.V70	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom	-	no_errors	SNRK	HGNC	ENSG00000163788				104	0	0	80	5	5.88235
SNRK	0	genome.wustl.edu	37	3	43389110	43389110	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	43389110	43389110	G	A	SNP	SNRK	ENST00000296088	human	ensembl	74_37	+1	known	silent	c.1359	p.E453	0.994	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom	-	no_errors	SNRK	HGNC	ENSG00000163788				64	0	0	43	9	17.3077
ZNF445	0	genome.wustl.edu	37	3	44492035	44492035	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	44492035	44492035	T	A	SNP	ZNF445	ENST00000396077	human	ensembl	74_37	-1	known	missense	c.724	p.T242S	0.996	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF445	HGNC	ENSG00000185219				71	0	0	73	6	7.59494
ZNF852	0	genome.wustl.edu	37	3	44541791	44541791	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	44541791	44541791	G	A	SNP	ZNF852	ENST00000436261	human	ensembl	74_37	-1	known	nonsense	c.478	p.R160*	0.009	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF852	HGNC	ENSG00000178917				96	0	0	55	9	14.0625
ZNF197	0	genome.wustl.edu	37	3	44685375	44685375	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	44685375	44685375	T	G	SNP	ZNF197	ENST00000344387	human	ensembl	74_37	+1	known	missense	c.2753	p.V918G	0.823	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF197	HGNC	ENSG00000186448				148	0	0	123	8	6.10687
ZNF35	0	genome.wustl.edu	37	3	44692631	44692631	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	44692631	44692631	A	G	SNP	ZNF35	ENST00000396056	human	ensembl	74_37	+1	known	silent	c.72	p.E24	0.920	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF35	HGNC	ENSG00000169981				64	0	0	62	17	21.519
ZNF35	0	genome.wustl.edu	37	3	44701410	44701410	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	44701410	44701410	C	T	SNP	ZNF35	ENST00000396056	human	ensembl	74_37	+1	known	nonsense	c.1555	p.R519*	0.592	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF35	HGNC	ENSG00000169981				89	0	0	85	12	12.3711
ITPR1	0	genome.wustl.edu	37	3	4558230	4558230	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	4558230	4558230	G	A	SNP	ITPR1	ENST00000302640	human	ensembl	74_37	+1	known	missense	c.55	p.A19T	1.000	pfam_Ins145_P3_rcpt	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR1	HGNC	ENSG00000150995				214	0	0	156	11	6.58683
FYCO1	0	genome.wustl.edu	37	3	45972594	45972594	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	45972594	45972594	T	C	SNP	FYCO1	ENST00000535325	human	ensembl	74_37	-1	known	missense	c.4280	p.E1427G	0.999	superfamily_GOLD,pfscan_GOLD	pfam_Znf_FYVE,pfam_Run,superfamily_GOLD,superfamily_Znf_FYVE_PHD,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Znf_FYVE,pfscan_GOLD,pfscan_Run,pfscan_Znf_FYVE-rel	-	no_errors	FYCO1	HGNC	ENSG00000163820				32	0	0	31	4	11.4286
FYCO1	0	genome.wustl.edu	37	3	46008779	46008779	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	46008779	46008779	C	G	SNP	FYCO1	ENST00000535325	human	ensembl	74_37	-1	known	missense	c.2047	p.A683P	0.785	superfamily_Prefoldin	pfam_Znf_FYVE,pfam_Run,superfamily_GOLD,superfamily_Znf_FYVE_PHD,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Znf_FYVE,pfscan_GOLD,pfscan_Run,pfscan_Znf_FYVE-rel	-	no_errors	FYCO1	HGNC	ENSG00000163820				117	0	0	130	8	5.7971
CCR3	0	genome.wustl.edu	37	3	46307353	46307353	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	46307353	46307353	A	G	SNP	CCR3	ENST00000545097	human	ensembl	74_37	+1	known	missense	c.767	p.Y256C	0.846	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Chemokine_CCR3,prints_Chemokine_CCR1	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Chemokine_rcpt,prints_Chemokine_CCR3,prints_Chemokine_CCR1	-	no_errors	CCR3	HGNC	ENSG00000183625				82	0	0	64	4	5.88235
CCR2	0	genome.wustl.edu	37	3	46399365	46399365	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	46399365	46399365	T	A	SNP	CCR2	ENST00000292301	human	ensembl	74_37	+1	known	missense	c.347	p.F116Y	0.001	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Chemokine_rcpt,prints_Chemokine_CCR2	-	no_errors	CCR2	HGNC	ENSG00000121807				444	0	0	398	34	7.87037
LTF	0	genome.wustl.edu	37	3	46484968	46484968	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	46484968	46484968	C	T	SNP	LTF	ENST00000231751	human	ensembl	74_37	-1	known	missense	c.1619	p.S540N	0.000	pfam_Transferrin_fam,smart_Transferrin_fam,pirsf_Transferrin	pfam_Transferrin_fam,smart_Transferrin_fam,pirsf_Transferrin,prints_Transferrin_fam	-	no_errors	LTF	HGNC	ENSG00000012223				252	0	0	205	47	18.6508
ALS2CL	0	genome.wustl.edu	37	3	46729723	46729723	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	46729723	46729723	C	T	SNP	ALS2CL	ENST00000318962	human	ensembl	74_37	-1	known	missense	c.167	p.S56N	0.049	superfamily_DH-domain	pfam_MORN,pfam_VPS9,superfamily_DH-domain,smart_MORN,pfscan_VPS9	-	no_errors	ALS2CL	HGNC	ENSG00000178038				46	0	0	50	7	12.2807
ITPR1	0	genome.wustl.edu	37	3	4687267	4687267	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	4687267	4687267	G	A	SNP	ITPR1	ENST00000302640	human	ensembl	74_37	+1	known	missense	c.710	p.G237D	1.000	pfam_MIR_motif,superfamily_MIR_motif,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR1	HGNC	ENSG00000150995				35	0	0	33	4	10.8108
NBEAL2	0	genome.wustl.edu	37	3	47037074	47037074	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	47037074	47037074	G	A	SNP	NBEAL2	ENST00000450053	human	ensembl	74_37	+1	known	missense	c.1849	p.A617T	0.001	superfamily_ConA-like_lec_gl_sf	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl_sf,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NBEAL2	HGNC	ENSG00000160796				38	0	0	53	7	11.6667
NBEAL2	0	genome.wustl.edu	37	3	47037863	47037863	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	47037863	47037863	C	T	SNP	NBEAL2	ENST00000450053	human	ensembl	74_37	+1	known	missense	c.2254	p.P752S	0.998	superfamily_ConA-like_lec_gl_sf	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl_sf,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NBEAL2	HGNC	ENSG00000160796				40	0	0	48	4	7.69231
NBEAL2	0	genome.wustl.edu	37	3	47042782	47042782	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	47042782	47042782	A	G	SNP	NBEAL2	ENST00000450053	human	ensembl	74_37	+1	known	missense	c.4498	p.M1500V	1.000	NULL	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl_sf,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NBEAL2	HGNC	ENSG00000160796				60	0	0	67	4	5.6338
NBEAL2	0	genome.wustl.edu	37	3	47043945	47043945	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	47043945	47043945	G	A	SNP	NBEAL2	ENST00000450053	human	ensembl	74_37	+1	known	missense	c.5236	p.D1746N	1.000	NULL	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl_sf,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NBEAL2	HGNC	ENSG00000160796				49	0	0	61	9	12.8571
ITPR1	0	genome.wustl.edu	37	3	4715020	4715020	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	4715020	4715020	T	C	SNP	ITPR1	ENST00000302640	human	ensembl	74_37	+1	known	missense	c.2360	p.V787A	1.000	NULL	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR1	HGNC	ENSG00000150995				132	0	0	106	10	8.62069
KIF9	0	genome.wustl.edu	37	3	47288960	47288960	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	47288960	47288960	C	T	SNP	KIF9	ENST00000265529	human	ensembl	74_37	-1	known	missense	c.1136	p.R379H	0.941	superfamily_P-loop_NTPase	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF9	HGNC	ENSG00000088727				144	0	0	142	10	6.57895
KIF9	0	genome.wustl.edu	37	3	47315142	47315142	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	47315142	47315142	A	G	SNP	KIF9	ENST00000265529	human	ensembl	74_37	-1	known	missense	c.266	p.I89T	1.000	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF9	HGNC	ENSG00000088727				27	0	0	34	4	10.5263
PTPN23	0	genome.wustl.edu	37	3	47449865	47449865	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	47449865	47449865	C	T	SNP	PTPN23	ENST00000265562	human	ensembl	74_37	+1	known	silent	c.1215	p.P405	0.007	NULL	pfam_BRO1_dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_BRO1_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN23	HGNC	ENSG00000076201				65	0	0	58	7	10.7692
PTPN23	0	genome.wustl.edu	37	3	47454597	47454597	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	47454597	47454597	G	A	SNP	PTPN23	ENST00000265562	human	ensembl	74_37	+1	known	silent	c.4833	p.G1611	1.000	NULL	pfam_BRO1_dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_BRO1_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN23	HGNC	ENSG00000076201				79	0	0	63	6	8.69565
PTPN23	0	genome.wustl.edu	37	3	47454675	47454675	+	Nonstop_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	47454675	47454675	A	G	SNP	PTPN23	ENST00000265562	human	ensembl	74_37	+1	known	nonstop	c.4911	p.*1637W	0.998	NULL	pfam_BRO1_dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_BRO1_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN23	HGNC	ENSG00000076201				106	0	0	82	6	6.81818
CSPG5	0	genome.wustl.edu	37	3	47618735	47618735	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	47618735	47618735	C	T	SNP	CSPG5	ENST00000383738	human	ensembl	74_37	-1	known	missense	c.781	p.D261N	1.000	pfam_Chon_Sulph_att	pfam_Chon_Sulph_att,pfam_Neural_ProG_Cyt	-	no_errors	CSPG5	HGNC	ENSG00000114646				18	0	0	11	4	26.6667
SMARCC1	0	genome.wustl.edu	37	3	47787474	47787474	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	47787474	47787474	A	G	SNP	SMARCC1	ENST00000254480	human	ensembl	74_37	-1	known	missense	c.325	p.F109L	1.000	NULL	pfam_SWIRM,pfam_SANT/Myb,superfamily_Homeodomain-like,superfamily_BRCT_dom,smart_Chromo_domain/shadow,smart_SANT/Myb,pfscan_SWIRM,pfscan_Myb-like_dom	-	no_errors	SMARCC1	HGNC	ENSG00000173473				218	0	0	159	19	10.6742
DHX30	0	genome.wustl.edu	37	3	47870546	47870546	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	47870546	47870546	C	T	SNP	DHX30	ENST00000445061	human	ensembl	74_37	+1	known	silent	c.288	p.S96	0.998	NULL	pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_DUF1605,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX30	HGNC	ENSG00000132153				48	0	0	32	4	11.1111
DHX30	0	genome.wustl.edu	37	3	47889772	47889772	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	47889772	47889772	C	T	SNP	DHX30	ENST00000445061	human	ensembl	74_37	+1	known	nonsense	c.2389	p.R797*	0.526	superfamily_P-loop_NTPase,pfscan_Helicase_C	pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_DUF1605,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX30	HGNC	ENSG00000132153				49	0	0	62	6	8.82353
DHX30	0	genome.wustl.edu	37	3	47890735	47890735	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	47890735	47890735	C	A	SNP	DHX30	ENST00000445061	human	ensembl	74_37	+1	known	missense	c.2983	p.P995T	0.998	NULL	pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_DUF1605,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX30	HGNC	ENSG00000132153				91	0	0	89	11	11
CDC25A	0	genome.wustl.edu	37	3	48200451	48200451	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	48200451	48200451	C	T	SNP	CDC25A	ENST00000302506	human	ensembl	74_37	-1	known	missense	c.1559	p.R520H	0.999	NULL	pfam_MPI_Phosphatase,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,pfscan_Rhodanese-like_dom,prints_MPI_Phosphatase	-	no_errors	CDC25A	HGNC	ENSG00000164045				104	0	0	104	22	17.4603
CDC25A	0	genome.wustl.edu	37	3	48205845	48205845	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	48205845	48205845	A	G	SNP	CDC25A	ENST00000302506	human	ensembl	74_37	-1	known	missense	c.1274	p.V425A	1.000	pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,pfscan_Rhodanese-like_dom,prints_MPI_Phosphatase	pfam_MPI_Phosphatase,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,pfscan_Rhodanese-like_dom,prints_MPI_Phosphatase	-	no_errors	CDC25A	HGNC	ENSG00000164045				66	0	0	70	6	7.89474
CAMP	0	genome.wustl.edu	37	3	48266137	48266137	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	48266137	48266137	G	T	SNP	CAMP	ENST00000296435	human	ensembl	74_37	+1	known	missense	c.363	p.R121S	0.000	NULL	pfam_Cathelicidin,pfam_Cathlecidin_C	-	no_errors	CAMP	HGNC	ENSG00000164047				135	1	0.735294	110	9	7.56303
NME6	0	genome.wustl.edu	37	3	48336637	48336637	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	48336637	48336637	G	A	SNP	NME6	ENST00000421967	human	ensembl	74_37	-1	known	missense	c.346	p.R116C	0.210	pfam_Nucleoside_diP_kinase,superfamily_Nucleoside_diP_kinase,smart_Nucleoside_diP_kinase	pfam_Nucleoside_diP_kinase,superfamily_Nucleoside_diP_kinase,smart_Nucleoside_diP_kinase,prints_Nucleoside_diP_kinase	-	no_errors	NME6	HGNC	ENSG00000172113				52	0	0	67	10	12.987
ITPR1	0	genome.wustl.edu	37	3	4842131	4842131	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	4842131	4842131	G	A	SNP	ITPR1	ENST00000302640	human	ensembl	74_37	+1	known	silent	c.6909	p.S2303	0.075	NULL	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR1	HGNC	ENSG00000150995				74	0	0	73	16	17.9775
PLXNB1	0	genome.wustl.edu	37	3	48456404	48456404	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	48456404	48456404	C	T	SNP	PLXNB1	ENST00000296440	human	ensembl	74_37	-1	known	missense	c.4013	p.R1338H	0.533	pfam_IPT,superfamily_Ig_E-set,smart_IPT	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT,pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNB1	HGNC	ENSG00000164050				86	0	0	81	14	14.7368
SHISA5	0	genome.wustl.edu	37	3	48510469	48510469	+	RNA	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	48510469	48510469	A	G	SNP	SHISA5	ENST00000465449	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	SHISA5	HGNC	ENSG00000164054				68	0	0	68	4	5.55556
COL7A1	0	genome.wustl.edu	37	3	48615911	48615911	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	48615911	48615911	C	T	SNP	COL7A1	ENST00000328333	human	ensembl	74_37	-1	known	missense	c.5462	p.G1821D	0.999	NULL	pfam_Collagen,pfam_Fibronectin_type3,pfam_VWF_A,pfam_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,superfamily_Prot_inh_Kunz-m,smart_VWF_A,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL7A1	HGNC	ENSG00000114270				127	0	0	111	13	10.4839
TMEM89	0	genome.wustl.edu	37	3	48658279	48658279	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	48658279	48658279	C	T	SNP	TMEM89	ENST00000330862	human	ensembl	74_37	-1	known	missense	c.476	p.G159E	0.454	NULL	NULL	-	no_errors	TMEM89	HGNC	ENSG00000183396				114	0	0	136	9	6.2069
CELSR3	0	genome.wustl.edu	37	3	48697789	48697789	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	48697789	48697789	T	A	SNP	CELSR3	ENST00000544264	human	ensembl	74_37	-1	known	missense	c.2279	p.E760V	1.000	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_GPCR_2_secretin-like,pfam_Laminin_G,pfam_DUF3497,pfam_EG-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR3	HGNC	ENSG00000008300				65	0	0	62	6	8.82353
NCKIPSD	0	genome.wustl.edu	37	3	48717233	48717233	+	Splice_Site	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	48717233	48717233	C	T	SNP	NCKIPSD	ENST00000294129	human	ensembl	74_37	-1	known	splice_site	c.1350+1	e7+1	1.000	-	-	-	no_errors	NCKIPSD	HGNC	ENSG00000213672				89	0	0	89	8	8.24742
IP6K2	0	genome.wustl.edu	37	3	48725794	48725794	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	48725794	48725794	A	G	SNP	IP6K2	ENST00000328631	human	ensembl	74_37	-1	known	missense	c.1193	p.V398A	0.999	pfam_IPK	pfam_IPK	-	no_errors	IP6K2	HGNC	ENSG00000068745				85	0	0	76	4	5
ARIH2	0	genome.wustl.edu	37	3	48964946	48964946	+	RNA	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	48964946	48964946	G	A	SNP	ARIH2	ENST00000463204	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.091	-	-	-	no_errors	ARIH2	HGNC	ENSG00000177479				35	0	0	33	6	15.3846
ARIH2	0	genome.wustl.edu	37	3	48965063	48965063	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	48965063	48965063	G	A	SNP	ARIH2	ENST00000356401	human	ensembl	74_37	+1	known	silent	c.72	p.E24	0.350	NULL	pfam_Znf_C6HC,smart_Znf_RING,smart_Znf_C6HC,pfscan_Znf_RING	-	no_errors	ARIH2	HGNC	ENSG00000177479				35	0	0	34	5	12.8205
ARIH2	0	genome.wustl.edu	37	3	48965110	48965110	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	48965110	48965110	T	C	SNP	ARIH2	ENST00000356401	human	ensembl	74_37	+1	known	missense	c.119	p.V40A	1.000	NULL	pfam_Znf_C6HC,smart_Znf_RING,smart_Znf_C6HC,pfscan_Znf_RING	-	no_errors	ARIH2	HGNC	ENSG00000177479				44	0	0	42	4	8.69565
ARIH2	0	genome.wustl.edu	37	3	49017838	49017838	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	49017838	49017838	T	A	SNP	ARIH2	ENST00000356401	human	ensembl	74_37	+1	known	missense	c.1166	p.I389N	1.000	NULL	pfam_Znf_C6HC,smart_Znf_RING,smart_Znf_C6HC,pfscan_Znf_RING	-	no_errors	ARIH2	HGNC	ENSG00000177479				98	0	0	77	6	7.22892
WDR6	0	genome.wustl.edu	37	3	49049542	49049542	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	49049542	49049542	C	T	SNP	WDR6	ENST00000395474	human	ensembl	74_37	+1	known	missense	c.665	p.A222V	0.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_Quino_amine_DH_bsu,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR6	HGNC	ENSG00000178252				72	0	0	65	13	16.6667
USP19	0	genome.wustl.edu	37	3	49148577	49148577	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	49148577	49148577	A	G	SNP	USP19	ENST00000398888	human	ensembl	74_37	-1	known	silent	c.3042	p.G1014	0.918	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfam_Znf_MYND,pfam_CS_dom,superfamily_HSP20-like_chaperone,pfscan_CS_dom,pfscan_Znf_MYND,pfscan_Peptidase_C19/C67	-	no_errors	USP19	HGNC	ENSG00000172046				67	0	0	85	11	11.4583
USP19	0	genome.wustl.edu	37	3	49148735	49148735	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	49148735	49148735	A	C	SNP	USP19	ENST00000398888	human	ensembl	74_37	-1	known	missense	c.2972	p.I991S	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfam_Znf_MYND,pfam_CS_dom,superfamily_HSP20-like_chaperone,pfscan_CS_dom,pfscan_Znf_MYND,pfscan_Peptidase_C19/C67	-	no_errors	USP19	HGNC	ENSG00000172046				76	0	0	90	10	10
LAMB2	0	genome.wustl.edu	37	3	49159770	49159770	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	49159770	49159770	A	G	SNP	LAMB2	ENST00000305544	human	ensembl	74_37	-1	known	missense	c.4607	p.V1536A	1.000	NULL	pfam_EGF_laminin,pfam_Laminin_N,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,pfscan_Laminin_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB2	HGNC	ENSG00000172037				71	0	0	67	6	8.21918
LAMB2	0	genome.wustl.edu	37	3	49163223	49163223	+	Silent	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	49163223	49163223	G	T	SNP	LAMB2	ENST00000305544	human	ensembl	74_37	-1	known	silent	c.2445	p.L815	0.894	pfam_EGF_laminin,smart_EG-like_dom,smart_EGF_laminin,pfscan_EGF_laminin	pfam_EGF_laminin,pfam_Laminin_N,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,pfscan_Laminin_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB2	HGNC	ENSG00000172037				47	0	0	47	4	7.84314
CCDC71	0	genome.wustl.edu	37	3	49201174	49201174	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	49201174	49201174	A	G	SNP	CCDC71	ENST00000321895	human	ensembl	74_37	-1	known	silent	c.468	p.G156	0.000	NULL	NULL	-	no_errors	CCDC71	HGNC	ENSG00000177352				37	0	0	33	7	17.5
CCDC36	0	genome.wustl.edu	37	3	49293631	49293631	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	49293631	49293631	A	C	SNP	CCDC36	ENST00000296449	human	ensembl	74_37	+1	known	missense	c.701	p.Q234P	1.000	NULL	NULL	-	no_errors	CCDC36	HGNC	ENSG00000173421				160	0	0	128	18	12.3288
BSN	0	genome.wustl.edu	37	3	49689428	49689428	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	49689428	49689428	C	T	SNP	BSN	ENST00000296452	human	ensembl	74_37	+1	known	silent	c.2439	p.D813	1.000	NULL	pfam_Znf_piccolo,superfamily_Znf_FYVE_PHD	-	no_errors	BSN	HGNC	ENSG00000164061				41	0	0	36	4	10
BSN	0	genome.wustl.edu	37	3	49693315	49693315	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	49693315	49693315	A	T	SNP	BSN	ENST00000296452	human	ensembl	74_37	+1	known	missense	c.6326	p.D2109V	1.000	NULL	pfam_Znf_piccolo,superfamily_Znf_FYVE_PHD	-	no_errors	BSN	HGNC	ENSG00000164061				49	0	0	76	5	6.17284
BSN	0	genome.wustl.edu	37	3	49698225	49698225	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	49698225	49698225	A	T	SNP	BSN	ENST00000296452	human	ensembl	74_37	+1	known	missense	c.8947	p.I2983F	1.000	NULL	pfam_Znf_piccolo,superfamily_Znf_FYVE_PHD	-	no_errors	BSN	HGNC	ENSG00000164061				33	0	0	34	5	12.8205
MST1	0	genome.wustl.edu	37	3	49721785	49721785	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	49721785	49721785	A	G	SNP	MST1	ENST00000449682	human	ensembl	74_37	-1	known	missense	c.1978	p.C660R	1.000	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Kringle,pfam_Peptidase_S1,pfam_PAN-1_domain,superfamily_Trypsin-like_Pept_dom,superfamily_Kringle-like,smart_Pan_app,smart_Kringle,smart_Peptidase_S1,pfscan_Pan_app,pfscan_Kringle,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	MST1	HGNC	ENSG00000173531				76	0	0	73	13	15.1163
RNF123	0	genome.wustl.edu	37	3	49737706	49737706	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	49737706	49737706	G	A	SNP	RNF123	ENST00000327697	human	ensembl	74_37	+1	known	missense	c.1031	p.G344D	0.998	NULL	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,smart_Znf_RING,pfscan_B30.2/SPRY,pfscan_Znf_RING	-	no_errors	RNF123	HGNC	ENSG00000164068				46	0	0	34	3	8.10811
RNF123	0	genome.wustl.edu	37	3	49737739	49737739	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	49737739	49737739	A	C	SNP	RNF123	ENST00000327697	human	ensembl	74_37	+1	known	missense	c.1064	p.Q355P	0.046	NULL	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,smart_Znf_RING,pfscan_B30.2/SPRY,pfscan_Znf_RING	-	no_errors	RNF123	HGNC	ENSG00000164068				46	0	0	40	4	9.09091
RNF123	0	genome.wustl.edu	37	3	49740860	49740860	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	49740860	49740860	A	G	SNP	RNF123	ENST00000327697	human	ensembl	74_37	+1	known	missense	c.1751	p.E584G	1.000	NULL	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,smart_Znf_RING,pfscan_B30.2/SPRY,pfscan_Znf_RING	-	no_errors	RNF123	HGNC	ENSG00000164068				25	0	0	21	5	19.2308
RNF123	0	genome.wustl.edu	37	3	49750027	49750027	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	49750027	49750027	T	A	SNP	RNF123	ENST00000327697	human	ensembl	74_37	+1	known	missense	c.2612	p.I871N	1.000	NULL	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,smart_Znf_RING,pfscan_B30.2/SPRY,pfscan_Znf_RING	-	no_errors	RNF123	HGNC	ENSG00000164068				57	0	0	65	4	5.7971
AMIGO3	0	genome.wustl.edu	37	3	49755433	49755433	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	49755433	49755433	C	T	SNP	AMIGO3	ENST00000320431	human	ensembl	74_37	-1	known	missense	c.1466	p.G489D	0.974	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	AMIGO3	HGNC	ENSG00000176020				44	0	0	45	5	10
AMIGO3	0	genome.wustl.edu	37	3	49755718	49755718	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	49755718	49755718	C	T	SNP	AMIGO3	ENST00000320431	human	ensembl	74_37	-1	known	missense	c.1181	p.G394D	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	AMIGO3	HGNC	ENSG00000176020				36	0	0	41	6	12.766
AMIGO3	0	genome.wustl.edu	37	3	49756426	49756426	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	49756426	49756426	G	A	SNP	AMIGO3	ENST00000320431	human	ensembl	74_37	-1	known	missense	c.473	p.A158V	0.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	AMIGO3	HGNC	ENSG00000176020				109	0	0	110	12	9.83607
AMIGO3	0	genome.wustl.edu	37	3	49756752	49756752	+	Silent	SNP	G	G	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	49756752	49756752	G	C	SNP	AMIGO3	ENST00000320431	human	ensembl	74_37	-1	known	silent	c.147	p.G49	0.017	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	AMIGO3	HGNC	ENSG00000176020				70	0	0	76	5	6.17284
RBM6	0	genome.wustl.edu	37	3	50098595	50098595	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	50098595	50098595	G	T	SNP	RBM6	ENST00000266022	human	ensembl	74_37	+1	known	missense	c.2294	p.R765M	1.000	NULL	pfam_G_patch_dom,smart_RRM_dom,smart_G_patch_dom,pfscan_G_patch_dom,pfscan_RRM_dom	-	no_errors	RBM6	HGNC	ENSG00000004534				58	0	0	37	6	13.9535
SEMA3F	0	genome.wustl.edu	37	3	50220395	50220395	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	50220395	50220395	G	A	SNP	SEMA3F	ENST00000002829	human	ensembl	74_37	+1	known	missense	c.962	p.R321Q	1.000	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Semap_dom,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_Ig_sub,smart_Ig_sub2,pfscan_Semap_dom,pfscan_Ig-like_dom	-	no_errors	SEMA3F	HGNC	ENSG00000001617				37	0	0	34	7	17.0732
NAT6	0	genome.wustl.edu	37	3	50334959	50334959	+	Splice_Site	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	50334959	50334959	C	T	SNP	NAT6	ENST00000354862	human	ensembl	74_37	-1	known	splice_site	c.3-1	e2-1	0.000	-	-	-	no_errors	NAT6	HGNC	ENSG00000243477				66	0	0	62	14	18.4211
ZMYND10	0	genome.wustl.edu	37	3	50380781	50380781	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	50380781	50380781	C	G	SNP	ZMYND10	ENST00000231749	human	ensembl	74_37	-1	known	missense	c.467	p.G156A	0.000	pirsf_UCP037948_Znf-MYND	pfam_Znf_MYND,pirsf_UCP037948_Znf-MYND,pfscan_Znf_MYND	-	no_errors	ZMYND10	HGNC	ENSG00000004838				55	0	0	67	5	6.94444
NPRL2	0	genome.wustl.edu	37	3	50385278	50385278	+	Nonsense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	50385278	50385278	A	T	SNP	NPRL2	ENST00000232501	human	ensembl	74_37	-1	known	nonsense	c.987	p.Y329*	0.997	pfam_NPR2	pfam_NPR2	-	no_errors	NPRL2	HGNC	ENSG00000114388				83	0	0	102	8	7.27273
CACNA2D2	0	genome.wustl.edu	37	3	50413106	50413106	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	50413106	50413106	T	C	SNP	CACNA2D2	ENST00000435965	human	ensembl	74_37	-1	known	missense	c.1876	p.T626A	1.000	pfam_VDCC_a2/dsu	pfam_VWA_N,pfam_VDCC_a2/dsu,pfam_Cache_domain,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	CACNA2D2	HGNC	ENSG00000007402				60	0	0	62	5	7.46269
CISH	0	genome.wustl.edu	37	3	50645108	50645108	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	50645108	50645108	G	A	SNP	CISH	ENST00000443053	human	ensembl	74_37	-1	known	missense	c.758	p.A253V	0.000	pfam_SOCS_C,smart_SOCS_C,pfscan_SOCS_C	pfam_SH2,pfam_SOCS_C,smart_SH2,smart_SOCS_C,pfscan_SOCS_C,pfscan_SH2,prints_SH2	-	no_errors	CISH	HGNC	ENSG00000114737				79	0	0	77	6	7.22892
CISH	0	genome.wustl.edu	37	3	50645243	50645243	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	50645243	50645243	G	A	SNP	CISH	ENST00000443053	human	ensembl	74_37	-1	known	missense	c.623	p.A208V	0.000	NULL	pfam_SH2,pfam_SOCS_C,smart_SH2,smart_SOCS_C,pfscan_SOCS_C,pfscan_SH2,prints_SH2	-	no_errors	CISH	HGNC	ENSG00000114737				66	0	0	52	13	20
DOCK3	0	genome.wustl.edu	37	3	51101984	51101984	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	51101984	51101984	G	A	SNP	DOCK3	ENST00000266037	human	ensembl	74_37	+1	known	missense	c.421	p.E141K	1.000	NULL	pfam_DOCK_C,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK3	HGNC	ENSG00000088538				137	0	0	110	10	8.33333
DOCK3	0	genome.wustl.edu	37	3	51352414	51352414	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	51352414	51352414	A	G	SNP	DOCK3	ENST00000266037	human	ensembl	74_37	+1	known	missense	c.3257	p.E1086G	1.000	superfamily_ARM-type_fold	pfam_DOCK_C,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK3	HGNC	ENSG00000088538				35	0	0	34	4	10.5263
DOCK3	0	genome.wustl.edu	37	3	51352435	51352435	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	51352435	51352435	C	T	SNP	DOCK3	ENST00000266037	human	ensembl	74_37	+1	known	missense	c.3278	p.P1093L	1.000	superfamily_ARM-type_fold	pfam_DOCK_C,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK3	HGNC	ENSG00000088538				44	0	0	32	6	15.7895
DOCK3	0	genome.wustl.edu	37	3	51352488	51352488	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	51352488	51352488	C	T	SNP	DOCK3	ENST00000266037	human	ensembl	74_37	+1	known	missense	c.3331	p.R1111W	0.997	superfamily_ARM-type_fold	pfam_DOCK_C,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK3	HGNC	ENSG00000088538				60	0	0	41	7	14.5833
DOCK3	0	genome.wustl.edu	37	3	51376458	51376458	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	51376458	51376458	A	G	SNP	DOCK3	ENST00000266037	human	ensembl	74_37	+1	known	silent	c.3765	p.T1255	0.998	NULL	pfam_DOCK_C,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK3	HGNC	ENSG00000088538				30	0	0	17	3	15
DOCK3	0	genome.wustl.edu	37	3	51393879	51393879	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	51393879	51393879	C	T	SNP	DOCK3	ENST00000266037	human	ensembl	74_37	+1	known	silent	c.4458	p.S1486	1.000	pfam_DOCK_C	pfam_DOCK_C,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK3	HGNC	ENSG00000088538				123	0	0	111	11	9.01639
PCBP4	0	genome.wustl.edu	37	3	51992332	51992332	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	51992332	51992332	C	T	SNP	PCBP4	ENST00000395014	human	ensembl	74_37	-1	known	silent	c.1020	p.T340	0.405	NULL	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	PCBP4	HGNC	ENSG00000090097				24	0	0	20	3	13.0435
POC1A	0	genome.wustl.edu	37	3	52183949	52183949	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	52183949	52183949	C	T	SNP	POC1A	ENST00000296484	human	ensembl	74_37	-1	known	missense	c.158	p.R53H	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_TIF_beta_prop-like,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	POC1A	HGNC	ENSG00000164087				57	0	0	61	5	7.57576
TLR9	0	genome.wustl.edu	37	3	52255388	52255388	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	52255388	52255388	G	A	SNP	TLR9	ENST00000597542	human	ensembl	74_37	-1	known	missense	c.3016	p.R1006W	1.000	pfam_TIR_dom,superfamily_TIR_dom,smart_TIR_dom,pfscan_TIR_dom	pfam_Leu-rich_rpt,pfam_TIR_dom,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR9	HGNC	ENSG00000239732				43	0	0	56	8	12.5
TLR9	0	genome.wustl.edu	37	3	52257218	52257218	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	52257218	52257218	G	A	SNP	TLR9	ENST00000597542	human	ensembl	74_37	-1	known	missense	c.1186	p.H396Y	0.006	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_TIR_dom,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR9	HGNC	ENSG00000239732				95	0	0	106	8	7.01754
TLR9	0	genome.wustl.edu	37	3	52257565	52257565	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	52257565	52257565	C	T	SNP	TLR9	ENST00000597542	human	ensembl	74_37	-1	known	missense	c.839	p.R280H	0.974	NULL	pfam_Leu-rich_rpt,pfam_TIR_dom,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR9	HGNC	ENSG00000239732				17	0	0	36	5	12.1951
DNAH1	0	genome.wustl.edu	37	3	52383021	52383021	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	52383021	52383021	A	T	SNP	DNAH1	ENST00000420323	human	ensembl	74_37	+1	known	missense	c.2224	p.I742F	0.865	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase	-	no_errors	DNAH1	HGNC	ENSG00000114841				69	0	0	75	8	9.63855
DNAH1	0	genome.wustl.edu	37	3	52403902	52403902	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	52403902	52403902	G	A	SNP	DNAH1	ENST00000420323	human	ensembl	74_37	+1	known	missense	c.6005	p.R2002H	1.000	pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase	-	no_errors	DNAH1	HGNC	ENSG00000114841				77	0	0	68	8	10.5263
DNAH1	0	genome.wustl.edu	37	3	52429663	52429663	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	52429663	52429663	A	T	SNP	DNAH1	ENST00000420323	human	ensembl	74_37	+1	known	missense	c.11228	p.E3743V	1.000	pfam_Dynein_heavy_dom	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase	-	no_errors	DNAH1	HGNC	ENSG00000114841				37	0	0	35	5	12.5
TNNC1	0	genome.wustl.edu	37	3	52485813	52485813	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	52485813	52485813	G	A	SNP	TNNC1	ENST00000232975	human	ensembl	74_37	-1	known	silent	c.264	p.D88	1.000	NULL	pfam_EF_hand_dom,smart_EF_hand_dom,prints_Recoverin,pfscan_EF_hand_dom	-	no_errors	TNNC1	HGNC	ENSG00000114854				107	0	0	110	7	5.98291
TNNC1	0	genome.wustl.edu	37	3	52486162	52486162	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	52486162	52486162	A	G	SNP	TNNC1	ENST00000232975	human	ensembl	74_37	-1	known	silent	c.162	p.P54	0.000	pfscan_EF_hand_dom	pfam_EF_hand_dom,smart_EF_hand_dom,prints_Recoverin,pfscan_EF_hand_dom	-	no_errors	TNNC1	HGNC	ENSG00000114854				119	0	0	120	10	7.69231
NISCH	0	genome.wustl.edu	37	3	52504925	52504925	+	Splice_Site	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	52504925	52504925	T	C	SNP	NISCH	ENST00000345716	human	ensembl	74_37	+1	known	splice_site	c.409+2	e4+2	0.997	-	-	-	no_errors	NISCH	HGNC	ENSG00000010322				145	1	0.684932	133	9	6.33803
STAB1	0	genome.wustl.edu	37	3	52556242	52556242	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	52556242	52556242	G	A	SNP	STAB1	ENST00000321725	human	ensembl	74_37	+1	known	missense	c.6461	p.G2154D	0.974	smart_EG-like_dom,pfscan_EG-like_dom	pfam_FAS1_domain,pfam_Link,superfamily_C-type_lectin_fold,superfamily_FAS1_domain,smart_EG-like_dom,smart_EGF_laminin,smart_FAS1_domain,smart_EGF-like_Ca-bd_dom,smart_Link,pfscan_EG-like_dom,pfscan_FAS1_domain,pfscan_Link	-	no_errors	STAB1	HGNC	ENSG00000010327				44	0	0	59	5	7.8125
PBRM1	0	genome.wustl.edu	37	3	52598072	52598072	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	52598072	52598072	T	A	SNP	PBRM1	ENST00000296302	human	ensembl	74_37	-1	known	missense	c.3869	p.Y1290F	1.000	NULL	pfam_Bromodomain,pfam_BAH_dom,pfam_HMG_box_dom,superfamily_Bromodomain,superfamily_HMG_box_dom,smart_Bromodomain,smart_BAH_dom,smart_HMG_box_dom,pfscan_BAH_dom,pfscan_HMG_box_dom,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	PBRM1	HGNC	ENSG00000163939				71	0	0	52	4	7.14286
PBRM1	0	genome.wustl.edu	37	3	52643740	52643740	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	52643740	52643740	T	C	SNP	PBRM1	ENST00000296302	human	ensembl	74_37	-1	known	missense	c.2156	p.Q719R	1.000	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain	pfam_Bromodomain,pfam_BAH_dom,pfam_HMG_box_dom,superfamily_Bromodomain,superfamily_HMG_box_dom,smart_Bromodomain,smart_BAH_dom,smart_HMG_box_dom,pfscan_BAH_dom,pfscan_HMG_box_dom,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	PBRM1	HGNC	ENSG00000163939				156	1	0.636943	124	14	10.1449
NEK4	0	genome.wustl.edu	37	3	52745874	52745874	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	52745874	52745874	C	T	SNP	NEK4	ENST00000233027	human	ensembl	74_37	-1	known	silent	c.2445	p.R815	0.966	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK4	HGNC	ENSG00000114904				233	0	0	201	18	8.21918
ITIH1	0	genome.wustl.edu	37	3	52821105	52821105	+	Splice_Site	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	52821105	52821105	G	T	SNP	ITIH1	ENST00000542827	human	ensembl	74_37	+1	known	splice_site	c.1877+1	e14+1	0.997	-	-	-	no_errors	ITIH1	HGNC	ENSG00000055957				99	0	0	98	6	5.76923
ITIH3	0	genome.wustl.edu	37	3	52833437	52833437	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	52833437	52833437	T	C	SNP	ITIH3	ENST00000449956	human	ensembl	74_37	+1	known	missense	c.839	p.V280A	0.192	NULL	pfam_ITI_HC_C,pfam_VIT,pfam_VWF_A,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	ITIH3	HGNC	ENSG00000162267				53	0	0	45	4	8.16327
TMEM110	0	genome.wustl.edu	37	3	52877754	52877754	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	52877754	52877754	C	T	SNP	TMEM110	ENST00000355083	human	ensembl	74_37	-1	known	missense	c.601	p.V201I	1.000	pfam_DUF3661_TM	pfam_DUF3661_TM	-	no_errors	TMEM110	HGNC	ENSG00000213533				119	0	0	111	13	10.4839
SFMBT1	0	genome.wustl.edu	37	3	52977522	52977522	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	52977522	52977522	T	C	SNP	SFMBT1	ENST00000358080	human	ensembl	74_37	-1	known	missense	c.211	p.T71A	1.000	pfam_Mbt,smart_Mbt,pfscan_Mbt	pfam_Mbt,pfam_DUF3588,pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_Mbt,smart_SAM,pfscan_Mbt	-	no_errors	SFMBT1	HGNC	ENSG00000163935				60	0	0	68	5	6.84932
CACNA1D	0	genome.wustl.edu	37	3	53700410	53700410	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	53700410	53700410	A	G	SNP	CACNA1D	ENST00000288139	human	ensembl	74_37	+1	known	missense	c.964	p.N322D	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su,prints_LVDCC_a1dsu	-	no_errors	CACNA1D	HGNC	ENSG00000157388				173	0	0	226	22	8.87097
CACNA1D	0	genome.wustl.edu	37	3	53757947	53757947	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	53757947	53757947	G	A	SNP	CACNA1D	ENST00000288139	human	ensembl	74_37	+1	known	missense	c.2081	p.G694D	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su,prints_LVDCC_a1dsu	-	no_errors	CACNA1D	HGNC	ENSG00000157388				119	0	0	90	10	10
CACNA1D	0	genome.wustl.edu	37	3	53783420	53783420	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	53783420	53783420	T	C	SNP	CACNA1D	ENST00000288139	human	ensembl	74_37	+1	known	missense	c.3500	p.F1167S	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su,prints_LVDCC_a1dsu	-	no_errors	CACNA1D	HGNC	ENSG00000157388				71	0	0	66	5	7.04225
IL17RB	0	genome.wustl.edu	37	3	53892801	53892801	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	53892801	53892801	T	C	SNP	IL17RB	ENST00000288167	human	ensembl	74_37	+1	known	missense	c.803	p.V268A	0.128	NULL	pfam_SEFIR	-	no_errors	IL17RB	HGNC	ENSG00000056736				52	0	0	39	5	11.3636
ACTR8	0	genome.wustl.edu	37	3	53902862	53902862	+	Nonsense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	53902862	53902862	T	A	SNP	ACTR8	ENST00000335754	human	ensembl	74_37	-1	known	nonsense	c.1759	p.K587*	1.000	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,smart_Actin-related	-	no_errors	ACTR8	HGNC	ENSG00000113812				66	0	0	72	10	12.1951
CACNA2D3	0	genome.wustl.edu	37	3	54157558	54157558	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	54157558	54157558	G	A	SNP	CACNA2D3	ENST00000288197	human	ensembl	74_37	+1	known	silent	c.141	p.S47	0.988	NULL	pfam_VWA_N,pfam_Cache_domain,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	CACNA2D3	HGNC	ENSG00000157445				131	0	0	105	22	17.3228
CACNA2D3	0	genome.wustl.edu	37	3	54905633	54905633	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	54905633	54905633	A	G	SNP	CACNA2D3	ENST00000288197	human	ensembl	74_37	+1	known	missense	c.1694	p.E565G	1.000	NULL	pfam_VWA_N,pfam_Cache_domain,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	CACNA2D3	HGNC	ENSG00000157445				98	0	0	79	5	5.95238
CACNA2D3	0	genome.wustl.edu	37	3	54922023	54922023	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	54922023	54922023	G	A	SNP	CACNA2D3	ENST00000288197	human	ensembl	74_37	+1	known	silent	c.2094	p.A698	0.004	NULL	pfam_VWA_N,pfam_Cache_domain,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	CACNA2D3	HGNC	ENSG00000157445				133	0	0	103	11	9.64912
LRTM1	0	genome.wustl.edu	37	3	54958982	54958982	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	54958982	54958982	C	T	SNP	LRTM1	ENST00000273286	human	ensembl	74_37	-1	known	missense	c.268	p.A90T	0.982	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	LRTM1	HGNC	ENSG00000144771				60	0	0	52	10	16.129
ERC2	0	genome.wustl.edu	37	3	56114985	56114985	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	56114985	56114985	C	T	SNP	ERC2	ENST00000288221	human	ensembl	74_37	-1	known	missense	c.1501	p.E501K	1.000	pfam_CAZ_cplx_RIM-bd_prot,superfamily_Prefoldin	pfam_CAZ_cplx_RIM-bd_prot,superfamily_Prefoldin	-	no_errors	ERC2	HGNC	ENSG00000187672				55	0	0	37	7	15.9091
FAM208A	0	genome.wustl.edu	37	3	56657354	56657354	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	56657354	56657354	T	A	SNP	FAM208A	ENST00000355628	human	ensembl	74_37	-1	known	missense	c.4541	p.D1514V	0.005	NULL	pfam_DUF3715	-	no_errors	FAM208A	HGNC	ENSG00000163946				65	0	0	58	5	7.93651
SPATA12	0	genome.wustl.edu	37	3	57107810	57107810	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	57107810	57107810	G	A	SNP	SPATA12	ENST00000334325	human	ensembl	74_37	+1	known	missense	c.88	p.V30I	0.000	NULL	NULL	-	no_errors	SPATA12	HGNC	ENSG00000186451				82	0	0	69	15	17.8571
HESX1	0	genome.wustl.edu	37	3	57232257	57232257	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	57232257	57232257	T	C	SNP	HESX1	ENST00000295934	human	ensembl	74_37	-1	known	missense	c.526	p.K176E	0.995	superfamily_Homeodomain-like	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	HESX1	HGNC	ENSG00000163666				97	0	0	43	11	20.3704
APPL1	0	genome.wustl.edu	37	3	57274552	57274552	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	57274552	57274552	T	C	SNP	APPL1	ENST00000288266	human	ensembl	74_37	+1	known	silent	c.345	p.I115	0.979	NULL	pfam_PTB/PI_dom,smart_Pleckstrin_homology,smart_PTB/PI_dom,pfscan_Pleckstrin_homology,pfscan_PTB/PI_dom	-	no_errors	APPL1	HGNC	ENSG00000157500				107	0	0	66	9	12
ASB14	0	genome.wustl.edu	37	3	57312659	57312659	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	57312659	57312659	C	T	SNP	ASB14	ENST00000389601	human	ensembl	74_37	-1	known	missense	c.1177	p.A393T	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C,prints_Ankyrin_rpt	-	no_errors	ASB14	HGNC	ENSG00000239388				94	0	0	103	12	10.4348
FLNB	0	genome.wustl.edu	37	3	58104628	58104628	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	58104628	58104628	T	C	SNP	FLNB	ENST00000295956	human	ensembl	74_37	+1	known	silent	c.2775	p.G925	0.330	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNB	HGNC	ENSG00000136068				129	1	0.769231	128	11	7.91367
RPP14	0	genome.wustl.edu	37	3	58302681	58302681	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	58302681	58302681	A	G	SNP	RPP14	ENST00000295959	human	ensembl	74_37	+1	known	silent	c.279	p.G93	1.000	pfam_RNase_P/MRP_subunit	pfam_RNase_P/MRP_subunit	-	no_errors	RPP14	HGNC	ENSG00000163684				105	0	0	94	5	5.05051
ACOX2	0	genome.wustl.edu	37	3	58502969	58502969	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	58502969	58502969	G	A	SNP	ACOX2	ENST00000302819	human	ensembl	74_37	-1	known	missense	c.1814	p.A605V	0.005	pfam_Acyl-CoA_oxidase_C,superfamily_AcylCo_DH/oxidase_C,pirsf_Acyl-CoA_oxidase	pfam_Acyl-CoA_oxidase_C,pfam_Acyl-CoA_Oxase/DH_cen-dom,superfamily_AcylCo_DH/oxidase_C,superfamily_AcylCoA_DH/oxidase_NM_dom,pirsf_Acyl-CoA_oxidase	-	no_errors	ACOX2	HGNC	ENSG00000168306				91	0	0	89	9	9.18367
FAM3D	0	genome.wustl.edu	37	3	58639434	58639434	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	58639434	58639434	T	G	SNP	FAM3D	ENST00000358781	human	ensembl	74_37	-1	known	missense	c.88	p.S30R	0.000	NULL	NULL	-	no_errors	FAM3D	HGNC	ENSG00000198643				122	0	0	106	7	6.19469
PTPRG	0	genome.wustl.edu	37	3	62180761	62180761	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	62180761	62180761	C	T	SNP	PTPRG	ENST00000474889	human	ensembl	74_37	+1	known	missense	c.1244	p.P415L	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Carbonic_anhydrase_a,pfam_Fibronectin_type3,superfamily_Carbonic_anhydrase_a,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Carbonic_anhydrase_a,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRG	HGNC	ENSG00000144724				118	1	0.840336	109	7	6.03448
PTPRG	0	genome.wustl.edu	37	3	62262706	62262706	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	62262706	62262706	A	G	SNP	PTPRG	ENST00000474889	human	ensembl	74_37	+1	known	missense	c.3619	p.N1207D	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Carbonic_anhydrase_a,pfam_Fibronectin_type3,superfamily_Carbonic_anhydrase_a,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Carbonic_anhydrase_a,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRG	HGNC	ENSG00000144724				96	0	0	65	7	9.72222
SYNPR	0	genome.wustl.edu	37	3	63466614	63466614	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	63466614	63466614	C	T	SNP	SYNPR	ENST00000478300	human	ensembl	74_37	+1	known	missense	c.191	p.A64V	0.678	pfam_Marvel,prints_Synaptophysin/porin	pfam_Marvel,prints_Synaptophysin/porin	-	no_errors	SYNPR	HGNC	ENSG00000163630				162	0	0	141	15	9.61538
ATXN7	0	genome.wustl.edu	37	3	63975959	63975959	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	63975959	63975959	T	C	SNP	ATXN7	ENST00000398590	human	ensembl	74_37	+1	known	missense	c.1469	p.L490S	0.997	NULL	pfam_SCA7_dom	-	no_errors	ATXN7	HGNC	ENSG00000163635				64	0	0	73	5	6.41026
ADAMTS9	0	genome.wustl.edu	37	3	64589923	64589923	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	64589923	64589923	G	A	SNP	ADAMTS9	ENST00000498707	human	ensembl	74_37	-1	known	nonsense	c.3559	p.R1187*	1.000	superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS9	HGNC	ENSG00000163638				72	0	0	65	15	18.75
ADAMTS9	0	genome.wustl.edu	37	3	64627598	64627598	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	64627598	64627598	C	T	SNP	ADAMTS9	ENST00000498707	human	ensembl	74_37	-1	known	nonsense	c.1782	p.W594*	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS9	HGNC	ENSG00000163638				149	0	0	133	7	5
MAGI1	0	genome.wustl.edu	37	3	65416466	65416466	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	65416466	65416466	G	A	SNP	MAGI1	ENST00000402939	human	ensembl	74_37	-1	known	missense	c.1454	p.T485M	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,pfam_WW_dom,pfam_GK/Ca_channel_bsu,superfamily_PDZ,superfamily_P-loop_NTPase,superfamily_WW_dom,smart_PDZ,smart_GK/Ca_channel_bsu,smart_WW_dom,pfscan_PDZ,pfscan_WW_dom,pfscan_Guanylate_kin-like	-	no_errors	MAGI1	HGNC	ENSG00000151276				81	0	0	84	7	7.69231
LRIG1	0	genome.wustl.edu	37	3	66430685	66430685	+	RNA	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	66430685	66430685	A	C	SNP	LRIG1	ENST00000495037	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.884	-	-	-	no_errors	LRIG1	HGNC	ENSG00000144749				53	0	0	49	7	12.5
LRIG1	0	genome.wustl.edu	37	3	66434438	66434438	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	66434438	66434438	G	T	SNP	LRIG1	ENST00000273261	human	ensembl	74_37	-1	known	missense	c.2048	p.A683D	1.000	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Cys-rich_flank_reg_C,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LRIG1	HGNC	ENSG00000144749				52	0	0	39	5	11.3636
KBTBD8	0	genome.wustl.edu	37	3	67054650	67054650	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	67054650	67054650	G	A	SNP	KBTBD8	ENST00000417314	human	ensembl	74_37	+1	known	missense	c.1259	p.C420Y	1.000	pfam_Kelch_1,pfam_Kelch_2,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_BACK,pfam_BTB_POZ,pfam_Kelch_1,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KBTBD8	HGNC	ENSG00000163376				183	0	0	140	15	9.67742
GRM7	0	genome.wustl.edu	37	3	6903101	6903101	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	6903101	6903101	G	A	SNP	GRM7	ENST00000402647	human	ensembl	74_37	+1	known	missense	c.26	p.R9H	0.947	prints_GPCR_3_mtglu_rcpt_7	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_7,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_4	-	no_errors	GRM7	HGNC	ENSG00000196277				22	0	0	14	4	22.2222
EOGT	0	genome.wustl.edu	37	3	69050797	69050797	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	69050797	69050797	A	G	SNP	EOGT	ENST00000383701	human	ensembl	74_37	-1	known	missense	c.689	p.V230A	0.223	pfam_Glycosyltransferase_AER61	pfam_Glycosyltransferase_AER61	-	no_errors	EOGT	HGNC	ENSG00000163378				68	0	0	49	3	5.76923
LMOD3	0	genome.wustl.edu	37	3	69168050	69168050	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	69168050	69168050	G	A	SNP	LMOD3	ENST00000420581	human	ensembl	74_37	-1	known	missense	c.1456	p.R486W	0.340	NULL	pfam_Tropomodulin	-	no_errors	LMOD3	HGNC	ENSG00000163380				44	0	0	49	5	9.25926
MITF	0	genome.wustl.edu	37	3	69928327	69928327	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	69928327	69928327	C	A	SNP	MITF	ENST00000448226	human	ensembl	74_37	+1	known	missense	c.147	p.S49R	1.000	NULL	pfam_bHLH_ZIP_TF_MiT/TFE,pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	MITF	HGNC	ENSG00000187098				61	0	0	58	6	9.375
MITF	0	genome.wustl.edu	37	3	69987112	69987112	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	69987112	69987112	G	A	SNP	MITF	ENST00000448226	human	ensembl	74_37	+1	known	missense	c.494	p.G165D	1.000	NULL	pfam_bHLH_ZIP_TF_MiT/TFE,pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	MITF	HGNC	ENSG00000187098				68	0	0	72	5	6.49351
FOXP1	0	genome.wustl.edu	37	3	71015100	71015100	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	71015100	71015100	C	A	SNP	FOXP1	ENST00000318789	human	ensembl	74_37	-1	known	missense	c.1830	p.M610I	1.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,prints_TF_fork_head,pfscan_TF_fork_head	-	no_errors	FOXP1	HGNC	ENSG00000114861				175	0	0	162	18	10
FOXP1	0	genome.wustl.edu	37	3	71026102	71026102	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	71026102	71026102	G	C	SNP	FOXP1	ENST00000318789	human	ensembl	74_37	-1	known	missense	c.1520	p.A507G	1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head	pfam_TF_fork_head,smart_TF_fork_head,prints_TF_fork_head,pfscan_TF_fork_head	-	no_errors	FOXP1	HGNC	ENSG00000114861				104	0	0	75	5	6.25
PDZRN3	0	genome.wustl.edu	37	3	73432638	73432638	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	73432638	73432638	T	C	SNP	PDZRN3	ENST00000263666	human	ensembl	74_37	-1	known	missense	c.3079	p.K1027E	1.000	NULL	pfam_PDZ,pfam_Znf_C3HC4_RING-type,superfamily_PDZ,superfamily_TRAF-like,smart_Znf_RING,smart_PDZ,pfscan_PDZ,pfscan_Znf_RING,pfscan_Znf_TRAF	-	no_errors	PDZRN3	HGNC	ENSG00000121440				294	0	0	242	15	5.83658
PDZRN3	0	genome.wustl.edu	37	3	73433389	73433389	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	73433389	73433389	G	A	SNP	PDZRN3	ENST00000263666	human	ensembl	74_37	-1	known	silent	c.2328	p.D776	1.000	NULL	pfam_PDZ,pfam_Znf_C3HC4_RING-type,superfamily_PDZ,superfamily_TRAF-like,smart_Znf_RING,smart_PDZ,pfscan_PDZ,pfscan_Znf_RING,pfscan_Znf_TRAF	-	no_errors	PDZRN3	HGNC	ENSG00000121440				54	0	0	50	4	7.40741
CNTN3	0	genome.wustl.edu	37	3	74383974	74383974	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	74383974	74383974	G	A	SNP	CNTN3	ENST00000263665	human	ensembl	74_37	-1	known	missense	c.1580	p.P527L	0.998	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CNTN3	HGNC	ENSG00000113805				79	0	0	73	6	7.59494
CNTN3	0	genome.wustl.edu	37	3	74420395	74420395	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	74420395	74420395	T	G	SNP	CNTN3	ENST00000263665	human	ensembl	74_37	-1	known	missense	c.610	p.N204H	0.001	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CNTN3	HGNC	ENSG00000113805				57	0	0	39	22	36.0656
ROBO2	0	genome.wustl.edu	37	3	77530337	77530337	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	77530337	77530337	A	G	SNP	ROBO2	ENST00000461745	human	ensembl	74_37	+1	known	missense	c.634	p.R212G	1.000	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	ROBO2	HGNC	ENSG00000185008				274	0	0	231	16	6.47773
ROBO2	0	genome.wustl.edu	37	3	77629161	77629161	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	77629161	77629161	T	A	SNP	ROBO2	ENST00000461745	human	ensembl	74_37	+1	known	missense	c.2392	p.S798T	0.999	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	ROBO2	HGNC	ENSG00000185008				117	0	0	97	8	7.61905
ROBO1	0	genome.wustl.edu	37	3	78680329	78680329	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	78680329	78680329	T	C	SNP	ROBO1	ENST00000464233	human	ensembl	74_37	-1	known	missense	c.3608	p.N1203S	0.335	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	ROBO1	HGNC	ENSG00000169855				34	0	0	32	3	8.57143
ROBO1	0	genome.wustl.edu	37	3	78763600	78763600	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	78763600	78763600	A	G	SNP	ROBO1	ENST00000464233	human	ensembl	74_37	-1	known	missense	c.992	p.V331A	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	ROBO1	HGNC	ENSG00000169855				78	0	0	61	13	17.5676
LMCD1	0	genome.wustl.edu	37	3	8590426	8590426	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	8590426	8590426	A	G	SNP	LMCD1	ENST00000157600	human	ensembl	74_37	+1	known	missense	c.560	p.K187R	1.000	pfam_PET_domain	pfam_PET_domain,pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	LMCD1	HGNC	ENSG00000071282				163	0	0	121	14	10.3704
SSUH2	0	genome.wustl.edu	37	3	8673737	8673737	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	8673737	8673737	G	A	SNP	SSUH2	ENST00000544814	human	ensembl	74_37	-1	known	missense	c.398	p.T133I	0.997	NULL	superfamily_HSP_DnaJ_Cys-rich_dom	-	no_errors	SSUH2	HGNC	ENSG00000125046				59	0	0	51	4	7.27273
POU1F1	0	genome.wustl.edu	37	3	87313466	87313466	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	87313466	87313466	A	G	SNP	POU1F1	ENST00000344265	human	ensembl	74_37	-1	known	silent	c.489	p.N163	0.959	pfam_POU_specific,superfamily_Lambda_DNA-bd_dom,smart_POU_specific,pfscan_POU_specific	pfam_POU_specific,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_POU_specific,prints_POU	-	no_errors	POU1F1	HGNC	ENSG00000064835				133	0	0	118	11	8.52713
OXTR	0	genome.wustl.edu	37	3	8794806	8794806	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	8794806	8794806	G	A	SNP	OXTR	ENST00000316793	human	ensembl	74_37	-1	known	missense	c.1027	p.R343C	1.000	pfam_7TM_GPCR_serpentine_rcpt_Srv,prints_Oxytocn_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Oxytocn_rcpt,prints_Vasoprsn_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OXTR	HGNC	ENSG00000180914				43	0	0	59	5	7.8125
OXTR	0	genome.wustl.edu	37	3	8794893	8794893	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	8794893	8794893	C	T	SNP	OXTR	ENST00000316793	human	ensembl	74_37	-1	known	missense	c.940	p.V314I	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Oxytocn_rcpt,prints_Vasoprsn_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OXTR	HGNC	ENSG00000180914				39	0	0	42	4	8.69565
OXTR	0	genome.wustl.edu	37	3	8809641	8809641	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	8809641	8809641	A	G	SNP	OXTR	ENST00000316793	human	ensembl	74_37	-1	known	missense	c.233	p.M78T	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Oxytocn_rcpt,prints_Vasoprsn_rcpt,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Oxytocn_rcpt,prints_Vasoprsn_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OXTR	HGNC	ENSG00000180914				16	0	0	25	3	10.7143
C3orf38	0	genome.wustl.edu	37	3	88205231	88205231	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	88205231	88205231	T	C	SNP	C3orf38	ENST00000318887	human	ensembl	74_37	+1	known	missense	c.436	p.C146R	1.000	NULL	NULL	-	no_errors	C3orf38	HGNC	ENSG00000179021				61	0	0	50	5	9.09091
EPHA3	0	genome.wustl.edu	37	3	89391057	89391057	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	89391057	89391057	C	T	SNP	EPHA3	ENST00000336596	human	ensembl	74_37	+1	known	missense	c.1123	p.P375S	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Growth_fac_rcpt_N_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_2,pfam_SAM_type1,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHA3	HGNC	ENSG00000044524				80	0	0	67	14	17.284
EPHA3	0	genome.wustl.edu	37	3	89498434	89498434	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	89498434	89498434	G	A	SNP	EPHA3	ENST00000336596	human	ensembl	74_37	+1	known	silent	c.2406	p.T802	0.128	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_2,pfam_SAM_type1,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHA3	HGNC	ENSG00000044524				117	1	0.847458	104	15	12.605
STX19	0	genome.wustl.edu	37	3	93733654	93733654	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	93733654	93733654	T	C	SNP	STX19	ENST00000315099	human	ensembl	74_37	-1	known	missense	c.460	p.T154A	1.000	superfamily_t-SNARE	pfam_T_SNARE_dom,pfam_Syntaxin_N,superfamily_t-SNARE,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	STX19	HGNC	ENSG00000178750				187	0	0	139	13	8.55263
SETD5	0	genome.wustl.edu	37	3	9517581	9517581	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	9517581	9517581	A	G	SNP	SETD5	ENST00000402198	human	ensembl	74_37	+1	known	missense	c.4135	p.R1379G	0.999	NULL	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	-	no_errors	SETD5	HGNC	ENSG00000168137				71	0	0	70	5	6.66667
EPHA6	0	genome.wustl.edu	37	3	96945107	96945107	+	Splice_Site	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	96945107	96945107	G	A	SNP	EPHA6	ENST00000389672	human	ensembl	74_37	+1	known	splice_site	c.1115-1	e4-1	1.000	-	-	-	no_errors	EPHA6	HGNC	ENSG00000080224				93	0	0	76	7	8.43373
EPHA6	0	genome.wustl.edu	37	3	97251327	97251327	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	97251327	97251327	A	G	SNP	EPHA6	ENST00000389672	human	ensembl	74_37	+1	known	missense	c.2326	p.S776G	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	EPHA6	HGNC	ENSG00000080224				94	0	0	66	15	18.5185
CRYBG3	0	genome.wustl.edu	37	3	97596328	97596328	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	97596328	97596328	A	T	SNP	CRYBG3	ENST00000182096	human	ensembl	74_37	+1	known	missense	c.446	p.D149V	0.976	NULL	pfam_Beta/gamma_crystallin,pfam_Ricin_B_lectin,superfamily_G_crystallin-rel,superfamily_Ricin_B_lectin,smart_Beta/gamma_crystallin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	CRYBG3	HGNC	ENSG00000080200				140	0	0	108	9	7.69231
MINA	0	genome.wustl.edu	37	3	97680537	97680537	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	97680537	97680537	T	A	SNP	MINA	ENST00000333396	human	ensembl	74_37	-1	known	missense	c.448	p.I150F	1.000	pfam_JmjC_dom,pfscan_JmjC_dom	pfam_JmjC_dom,pfscan_JmjC_dom	-	no_errors	MINA	HGNC	ENSG00000170854				93	0	0	91	10	9.90099
OR5H14	0	genome.wustl.edu	37	3	97868324	97868324	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	97868324	97868324	T	C	SNP	OR5H14	ENST00000437310	human	ensembl	74_37	+1	known	missense	c.95	p.L32S	0.241	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5H14	HGNC	ENSG00000236032				228	0	0	232	16	6.45161
OR5H6	0	genome.wustl.edu	37	3	97983222	97983222	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	97983222	97983222	G	T	SNP	OR5H6	ENST00000383696	human	ensembl	74_37	+1	known	nonsense	c.94	p.G32*	0.892	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5H6	HGNC	ENSG00000230301				257	1	0.387597	219	19	7.98319
OR5H6	0	genome.wustl.edu	37	3	97983483	97983483	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	97983483	97983483	T	C	SNP	OR5H6	ENST00000383696	human	ensembl	74_37	+1	known	missense	c.355	p.S119P	0.001	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5H6	HGNC	ENSG00000230301				217	0	0	158	16	9.1954
OR5H2	0	genome.wustl.edu	37	3	98002053	98002053	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	98002053	98002053	T	C	SNP	OR5H2	ENST00000355273	human	ensembl	74_37	+1	known	missense	c.322	p.S108P	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5H2	HGNC	ENSG00000197938				154	0	0	139	11	7.33333
OR5H2	0	genome.wustl.edu	37	3	98002164	98002164	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	98002164	98002164	C	T	SNP	OR5H2	ENST00000355273	human	ensembl	74_37	+1	known	silent	c.433	p.L145	0.001	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5H2	HGNC	ENSG00000197938				106	0	0	74	5	6.32911
OR5K2	0	genome.wustl.edu	37	3	98217044	98217044	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	98217044	98217044	A	G	SNP	OR5K2	ENST00000427338	human	ensembl	74_37	+1	known	missense	c.520	p.I174V	0.260	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5K2	HGNC	ENSG00000231861				252	1	0.395257	219	19	7.98319
GPR15	0	genome.wustl.edu	37	3	98251463	98251463	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	98251463	98251463	T	C	SNP	GPR15	ENST00000284311	human	ensembl	74_37	+1	known	missense	c.586	p.S196P	0.991	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srg,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srg,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_ATII_rcpt	-	no_errors	GPR15	HGNC	ENSG00000154165				120	0	0	108	6	5.26316
ST3GAL6	0	genome.wustl.edu	37	3	98510729	98510729	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	98510729	98510729	G	A	SNP	ST3GAL6	ENST00000394162	human	ensembl	74_37	+1	known	silent	c.801	p.A267	0.890	pfam_Glyco_trans_29,pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST3GAL6	HGNC	ENSG00000064225				166	0	0	127	11	7.97101
DCBLD2	0	genome.wustl.edu	37	3	98518401	98518401	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	98518401	98518401	A	G	SNP	DCBLD2	ENST00000326857	human	ensembl	74_37	-1	known	missense	c.2185	p.Y729H	0.996	NULL	pfam_Coagulation_fac_5/8-C_type_dom,pfam_CUB_dom,pfam_LCCL,superfamily_Galactose-bd-like,superfamily_CUB_dom,superfamily_LCCL,smart_CUB_dom,smart_LCCL,smart_Coagulation_fac_5/8-C_type_dom,pfscan_CUB_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_LCCL	-	no_errors	DCBLD2	HGNC	ENSG00000057019				163	0	0	159	18	10.1695
COL8A1	0	genome.wustl.edu	37	3	99513553	99513553	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	99513553	99513553	G	T	SNP	COL8A1	ENST00000261037	human	ensembl	74_37	+1	known	nonsense	c.808	p.G270*	1.000	NULL	pfam_Collagen,pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	COL8A1	HGNC	ENSG00000144810				57	0	0	70	4	5.40541
FILIP1L	0	genome.wustl.edu	37	3	99567352	99567352	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	99567352	99567352	A	G	SNP	FILIP1L	ENST00000354552	human	ensembl	74_37	-1	known	silent	c.3168	p.T1056	1.000	NULL	pfam_Cortactin-binding_p2_N,superfamily_Prefoldin,prints_Tropomyosin	-	no_errors	FILIP1L	HGNC	ENSG00000168386				184	0	0	177	21	10.6061
FILIP1L	0	genome.wustl.edu	37	3	99568036	99568036	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	99568036	99568036	A	G	SNP	FILIP1L	ENST00000354552	human	ensembl	74_37	-1	known	silent	c.2484	p.Y828	0.937	NULL	pfam_Cortactin-binding_p2_N,superfamily_Prefoldin,prints_Tropomyosin	-	no_errors	FILIP1L	HGNC	ENSG00000168386				193	0	0	173	21	10.8247
FILIP1L	0	genome.wustl.edu	37	3	99569857	99569857	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	99569857	99569857	C	A	SNP	FILIP1L	ENST00000354552	human	ensembl	74_37	-1	known	missense	c.663	p.K221N	0.975	pfam_Cortactin-binding_p2_N	pfam_Cortactin-binding_p2_N,superfamily_Prefoldin,prints_Tropomyosin	-	no_errors	FILIP1L	HGNC	ENSG00000168386				161	0	0	134	9	6.29371
IL17RC	0	genome.wustl.edu	37	3	9959109	9959109	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	9959109	9959109	G	A	SNP	IL17RC	ENST00000295981	human	ensembl	74_37	+1	known	missense	c.110	p.S37N	1.000	NULL	pfam_SEFIR	-	no_errors	IL17RC	HGNC	ENSG00000163702				45	0	0	51	4	7.27273
PRRT3	0	genome.wustl.edu	37	3	9991568	9991568	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	9991568	9991568	C	T	SNP	PRRT3	ENST00000295984	human	ensembl	74_37	-1	known	missense	c.232	p.A78T	0.000	NULL	NULL	-	no_errors	PRRT3	HGNC	ENSG00000163704				61	0	0	81	8	8.98876
ADH7	0	genome.wustl.edu	37	4	100341722	100341722	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	100341722	100341722	T	C	SNP	ADH7	ENST00000209665	human	ensembl	74_37	-1	known	missense	c.829	p.T277A	0.063	pfam_ADH_C	pfam_ADH_GroES-like,pfam_ADH_C,superfamily_GroES-like	-	no_errors	ADH7	HGNC	ENSG00000196344				85	0	0	71	9	11.25
MTTP	0	genome.wustl.edu	37	4	100522814	100522814	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	100522814	100522814	G	A	SNP	MTTP	ENST00000265517	human	ensembl	74_37	+1	known	missense	c.1287	p.M429I	1.000	pfam_Lipid_transpt_N,superfamily_Vitellinogen_superhlx,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	pfam_Lipid_transpt_N,superfamily_Vitellinogen_superhlx,superfamily_Lipid_transp_b-sht_shell,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	MTTP	HGNC	ENSG00000138823				169	0	0	120	10	7.69231
DNAJB14	0	genome.wustl.edu	37	4	100824976	100824976	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	100824976	100824976	A	T	SNP	DNAJB14	ENST00000442697	human	ensembl	74_37	-1	known	missense	c.922	p.Y308N	1.000	pfam_DUF1977_DnaJ-like	pfam_DUF1977_DnaJ-like,pfam_DnaJ_domain,superfamily_DnaJ_domain,smart_DnaJ_domain,pfscan_DnaJ_domain,prints_DnaJ_domain	-	no_errors	DNAJB14	HGNC	ENSG00000164031				96	0	0	65	5	7.14286
DNAJB14	0	genome.wustl.edu	37	4	100844339	100844339	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	100844339	100844339	T	C	SNP	DNAJB14	ENST00000442697	human	ensembl	74_37	-1	known	missense	c.309	p.I103M	1.000	superfamily_DnaJ_domain	pfam_DUF1977_DnaJ-like,pfam_DnaJ_domain,superfamily_DnaJ_domain,smart_DnaJ_domain,pfscan_DnaJ_domain,prints_DnaJ_domain	-	no_errors	DNAJB14	HGNC	ENSG00000164031				64	0	0	39	3	7.14286
DDIT4L	0	genome.wustl.edu	37	4	101108899	101108899	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	101108899	101108899	C	A	SNP	DDIT4L	ENST00000273990	human	ensembl	74_37	-1	known	nonsense	c.517	p.G173*	0.993	pfam_RTP801-like	pfam_RTP801-like	-	no_errors	DDIT4L	HGNC	ENSG00000145358				118	0	0	81	26	24.2991
DDIT4L	0	genome.wustl.edu	37	4	101108907	101108907	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	101108907	101108907	A	G	SNP	DDIT4L	ENST00000273990	human	ensembl	74_37	-1	known	missense	c.509	p.L170P	1.000	pfam_RTP801-like	pfam_RTP801-like	-	no_errors	DDIT4L	HGNC	ENSG00000145358				117	0	0	95	9	8.65385
DDIT4L	0	genome.wustl.edu	37	4	101108927	101108927	+	Silent	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	101108927	101108927	A	C	SNP	DDIT4L	ENST00000273990	human	ensembl	74_37	-1	known	silent	c.489	p.G163	0.773	pfam_RTP801-like	pfam_RTP801-like	-	no_errors	DDIT4L	HGNC	ENSG00000145358				111	0	0	102	9	8.10811
DDIT4L	0	genome.wustl.edu	37	4	101108948	101108948	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	101108948	101108948	A	G	SNP	DDIT4L	ENST00000273990	human	ensembl	74_37	-1	known	silent	c.468	p.S156	0.001	pfam_RTP801-like	pfam_RTP801-like	-	no_errors	DDIT4L	HGNC	ENSG00000145358				114	0	0	96	8	7.69231
NFKB1	0	genome.wustl.edu	37	4	103500113	103500113	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	103500113	103500113	T	G	SNP	NFKB1	ENST00000226574	human	ensembl	74_37	+1	known	missense	c.647	p.M216R	1.000	pfam_RHD,superfamily_p53-like_TF_DNA-bd,pfscan_RHD	pfam_RHD,pfam_Ankyrin_rpt,pfam_Death_domain,superfamily_p53-like_TF_DNA-bd,superfamily_Ankyrin_rpt-contain_dom,superfamily_Ig_E-set,superfamily_DEATH-like_dom,smart_IPT,smart_Ankyrin_rpt,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_RHD,prints_NF_Rel_Dor,prints_Ankyrin_rpt	-	no_errors	NFKB1	HGNC	ENSG00000109320				81	0	0	81	5	5.81395
NFKB1	0	genome.wustl.edu	37	4	103500181	103500181	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	103500181	103500181	G	A	SNP	NFKB1	ENST00000226574	human	ensembl	74_37	+1	known	missense	c.715	p.A239T	0.996	pfam_RHD,superfamily_p53-like_TF_DNA-bd,pfscan_RHD,prints_NF_Rel_Dor	pfam_RHD,pfam_Ankyrin_rpt,pfam_Death_domain,superfamily_p53-like_TF_DNA-bd,superfamily_Ankyrin_rpt-contain_dom,superfamily_Ig_E-set,superfamily_DEATH-like_dom,smart_IPT,smart_Ankyrin_rpt,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_RHD,prints_NF_Rel_Dor,prints_Ankyrin_rpt	-	no_errors	NFKB1	HGNC	ENSG00000109320				69	0	0	44	14	24.1379
NFKB1	0	genome.wustl.edu	37	4	103501757	103501757	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	103501757	103501757	G	T	SNP	NFKB1	ENST00000226574	human	ensembl	74_37	+1	known	missense	c.796	p.G266W	1.000	superfamily_Ig_E-set,smart_IPT,prints_NF_Rel_Dor	pfam_RHD,pfam_Ankyrin_rpt,pfam_Death_domain,superfamily_p53-like_TF_DNA-bd,superfamily_Ankyrin_rpt-contain_dom,superfamily_Ig_E-set,superfamily_DEATH-like_dom,smart_IPT,smart_Ankyrin_rpt,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_RHD,prints_NF_Rel_Dor,prints_Ankyrin_rpt	-	no_errors	NFKB1	HGNC	ENSG00000109320				70	0	0	47	4	7.84314
NFKB1	0	genome.wustl.edu	37	4	103514652	103514652	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	103514652	103514652	T	C	SNP	NFKB1	ENST00000226574	human	ensembl	74_37	+1	known	silent	c.1137	p.S379	0.940	superfamily_Ig_E-set	pfam_RHD,pfam_Ankyrin_rpt,pfam_Death_domain,superfamily_p53-like_TF_DNA-bd,superfamily_Ankyrin_rpt-contain_dom,superfamily_Ig_E-set,superfamily_DEATH-like_dom,smart_IPT,smart_Ankyrin_rpt,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_RHD,prints_NF_Rel_Dor,prints_Ankyrin_rpt	-	no_errors	NFKB1	HGNC	ENSG00000109320				225	1	0.442478	185	17	8.41584
NFKB1	0	genome.wustl.edu	37	4	103527752	103527752	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	103527752	103527752	T	G	SNP	NFKB1	ENST00000226574	human	ensembl	74_37	+1	known	missense	c.1852	p.S618A	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	pfam_RHD,pfam_Ankyrin_rpt,pfam_Death_domain,superfamily_p53-like_TF_DNA-bd,superfamily_Ankyrin_rpt-contain_dom,superfamily_Ig_E-set,superfamily_DEATH-like_dom,smart_IPT,smart_Ankyrin_rpt,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_RHD,prints_NF_Rel_Dor,prints_Ankyrin_rpt	-	no_errors	NFKB1	HGNC	ENSG00000109320				136	0	0	92	9	8.91089
SLC9B1	0	genome.wustl.edu	37	4	103827697	103827697	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	103827697	103827697	A	G	SNP	SLC9B1	ENST00000296422	human	ensembl	74_37	-1	known	silent	c.1191	p.I397	0.631	pfam_Cation/H_exchanger	pfam_Cation/H_exchanger	-	no_errors	SLC9B1	HGNC	ENSG00000164037				61	0	0	38	8	17.3913
SLC9B1	0	genome.wustl.edu	37	4	103870469	103870469	+	Silent	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	103870469	103870469	T	A	SNP	SLC9B1	ENST00000296422	human	ensembl	74_37	-1	known	silent	c.327	p.G109	0.173	pfam_Cation/H_exchanger	pfam_Cation/H_exchanger	-	no_errors	SLC9B1	HGNC	ENSG00000164037				114	0	0	90	6	6.25
CENPE	0	genome.wustl.edu	37	4	104080340	104080340	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	104080340	104080340	A	G	SNP	CENPE	ENST00000265148	human	ensembl	74_37	-1	known	missense	c.2428	p.S810P	0.000	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,superfamily_STAT_TF_coiled-coil,superfamily_Signal_recog_particl_SRP54_hlx,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	CENPE	HGNC	ENSG00000138778				121	0	0	81	7	7.95455
CENPE	0	genome.wustl.edu	37	4	104101599	104101599	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	104101599	104101599	T	C	SNP	CENPE	ENST00000265148	human	ensembl	74_37	-1	known	missense	c.1111	p.M371V	1.000	superfamily_P-loop_NTPase	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,superfamily_STAT_TF_coiled-coil,superfamily_Signal_recog_particl_SRP54_hlx,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	CENPE	HGNC	ENSG00000138778				106	0	0	62	6	8.82353
CENPE	0	genome.wustl.edu	37	4	104106977	104106977	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	104106977	104106977	T	C	SNP	CENPE	ENST00000265148	human	ensembl	74_37	-1	known	silent	c.735	p.T245	0.988	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,superfamily_STAT_TF_coiled-coil,superfamily_Signal_recog_particl_SRP54_hlx,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	CENPE	HGNC	ENSG00000138778				140	0	0	87	8	8.42105
ZNF518B	0	genome.wustl.edu	37	4	10447359	10447359	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	10447359	10447359	A	G	SNP	ZNF518B	ENST00000326756	human	ensembl	74_37	-1	known	silent	c.594	p.G198	0.607	smart_Znf_C2H2-like	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF518B	HGNC	ENSG00000178163				173	0	0	151	13	7.92683
TACR3	0	genome.wustl.edu	37	4	104577457	104577457	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	104577457	104577457	A	C	SNP	TACR3	ENST00000304883	human	ensembl	74_37	-1	known	missense	c.782	p.L261R	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_NK3_rcpt,prints_Neurokn_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt,prints_NK1_rcpt	-	no_errors	TACR3	HGNC	ENSG00000169836				148	0	0	116	11	8.66142
TET2	0	genome.wustl.edu	37	4	106155657	106155657	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	106155657	106155657	G	A	SNP	TET2	ENST00000380013	human	ensembl	74_37	+1	known	silent	c.558	p.E186	0.211	NULL	NULL	-	no_errors	TET2	HGNC	ENSG00000168769				46	0	0	38	6	13.6364
TET2	0	genome.wustl.edu	37	4	106156631	106156631	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	106156631	106156631	A	G	SNP	TET2	ENST00000380013	human	ensembl	74_37	+1	known	missense	c.1532	p.H511R	0.136	NULL	NULL	-	no_errors	TET2	HGNC	ENSG00000168769				73	0	0	68	8	10.5263
RNF212	0	genome.wustl.edu	37	4	1067437	1067437	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	1067437	1067437	G	A	SNP	RNF212	ENST00000433731	human	ensembl	74_37	-1	known	missense	c.524	p.A175V	0.037	NULL	pfscan_Znf_RING	-	no_errors	RNF212	HGNC	ENSG00000178222				56	0	0	28	17	37.7778
NPNT	0	genome.wustl.edu	37	4	106848532	106848532	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	106848532	106848532	G	A	SNP	NPNT	ENST00000379987	human	ensembl	74_37	+1	known	missense	c.212	p.G71E	1.000	smart_EG-like_dom	pfam_MAM_dom,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_TIL_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_MAM_dom,pfscan_EG-like_dom,pfscan_MAM_dom	-	no_errors	NPNT	HGNC	ENSG00000168743				55	0	0	45	7	13.4615
NPNT	0	genome.wustl.edu	37	4	106861286	106861286	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	106861286	106861286	T	C	SNP	NPNT	ENST00000379987	human	ensembl	74_37	+1	known	missense	c.560	p.V187A	1.000	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_MAM_dom,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_TIL_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_MAM_dom,pfscan_EG-like_dom,pfscan_MAM_dom	-	no_errors	NPNT	HGNC	ENSG00000168743				107	0	0	79	23	22.549
PAPSS1	0	genome.wustl.edu	37	4	108566127	108566127	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	108566127	108566127	C	T	SNP	PAPSS1	ENST00000265174	human	ensembl	74_37	-1	known	missense	c.1337	p.R446H	1.000	pfam_Sulfurylase_cat_dom,tigrfam_Sulphate_adenylyltransferase	pfam_Sulfurylase_cat_dom,pfam_APS_kinase,superfamily_PUA-like_domain,superfamily_P-loop_NTPase,tigrfam_Sulphate_adenylyltransferase,tigrfam_APS_kinase	-	no_errors	PAPSS1	HGNC	ENSG00000138801				80	0	0	77	18	18.9474
HADH	0	genome.wustl.edu	37	4	108954337	108954337	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	108954337	108954337	G	A	SNP	HADH	ENST00000403312	human	ensembl	74_37	+1	known	missense	c.943	p.A315T	0.998	pfam_3HC_DH_C,superfamily_6-PGluconate_DH_C-like	pfam_3-OHacyl-CoA_DH_NAD-bd,pfam_3HC_DH_C,pfam_AlaDH/PNT_NAD(H)-bd,pfam_UDP-Glc/GDP-Man_DH_N,superfamily_6-PGluconate_DH_C-like	-	no_errors	HADH	HGNC	ENSG00000138796				134	0	0	100	10	9.09091
SEC24B	0	genome.wustl.edu	37	4	110427546	110427546	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	110427546	110427546	A	G	SNP	SEC24B	ENST00000265175	human	ensembl	74_37	+1	known	silent	c.1551	p.P517	0.923	NULL	pfam_Sec23/24_trunk_dom,pfam_Sec23/24_helical_dom,pfam_Sec23_24_beta_S,pfam_Znf_Sec23_Sec24,pfam_Gelsolin_dom,superfamily_Sec23/24_helical_dom,superfamily_Znf_Sec23_Sec24	-	no_errors	SEC24B	HGNC	ENSG00000138802				172	0	0	130	12	8.4507
CFI	0	genome.wustl.edu	37	4	110685814	110685814	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	110685814	110685814	T	C	SNP	CFI	ENST00000394634	human	ensembl	74_37	-1	known	missense	c.361	p.T121A	0.000	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR	pfam_Peptidase_S1,pfam_LDrepeatLR_classA_rpt,pfam_SRCR,superfamily_Trypsin-like_Pept_dom,superfamily_Srcr_rcpt-rel,superfamily_LDrepeatLR_classA_rpt,smart_FacI_MAC,smart_Srcr_rcpt-rel,smart_LDrepeatLR_classA_rpt,smart_Peptidase_S1,pfscan_LDrepeatLR_classA_rpt,pfscan_SRCR,pfscan_Peptidase_S1,prints_Peptidase_S1A,prints_LDrepeatLR_classA_rpt	-	no_errors	CFI	HGNC	ENSG00000205403				87	0	0	70	9	11.3924
EGF	0	genome.wustl.edu	37	4	110925696	110925696	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	110925696	110925696	C	A	SNP	EGF	ENST00000265171	human	ensembl	74_37	+1	known	missense	c.3209	p.P1070H	0.994	pirsf_Pro-epidermal_GF	pirsf_Pro-epidermal_GF,pfam_LDLR_classB_rpt,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_LDLR_classB_rpt	-	no_errors	EGF	HGNC	ENSG00000138798				163	0	0	111	11	9.01639
ENPEP	0	genome.wustl.edu	37	4	111470987	111470987	+	Nonsense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	111470987	111470987	A	T	SNP	ENPEP	ENST00000265162	human	ensembl	74_37	+1	known	nonsense	c.2446	p.K816*	1.000	NULL	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	ENPEP	HGNC	ENSG00000138792				81	0	0	61	4	6.15385
ENPEP	0	genome.wustl.edu	37	4	111474605	111474605	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	111474605	111474605	T	C	SNP	ENPEP	ENST00000265162	human	ensembl	74_37	+1	known	missense	c.2636	p.V879A	0.996	NULL	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	ENPEP	HGNC	ENSG00000138792				153	1	0.649351	118	9	7.08661
ALPK1	0	genome.wustl.edu	37	4	113353667	113353667	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	113353667	113353667	G	A	SNP	ALPK1	ENST00000177648	human	ensembl	74_37	+1	known	silent	c.2964	p.R988	0.508	superfamily_Kinase-like_dom	pfam_MHCK_EF2_kinase,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	ALPK1	HGNC	ENSG00000073331				181	0	0	182	15	7.61421
ALPK1	0	genome.wustl.edu	37	4	113362087	113362087	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	113362087	113362087	A	G	SNP	ALPK1	ENST00000177648	human	ensembl	74_37	+1	known	missense	c.3553	p.N1185D	0.976	pfam_MHCK_EF2_kinase,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	pfam_MHCK_EF2_kinase,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	ALPK1	HGNC	ENSG00000073331				126	0	0	102	8	7.27273
ANK2	0	genome.wustl.edu	37	4	114276808	114276808	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	114276808	114276808	A	G	SNP	ANK2	ENST00000357077	human	ensembl	74_37	+1	known	missense	c.7034	p.E2345G	0.218	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,smart_Ankyrin_rpt,smart_ZU5,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK2	HGNC	ENSG00000145362				90	0	0	68	5	6.84932
ANK2	0	genome.wustl.edu	37	4	114280116	114280116	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	114280116	114280116	A	G	SNP	ANK2	ENST00000357077	human	ensembl	74_37	+1	known	missense	c.10342	p.S3448G	0.999	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,smart_Ankyrin_rpt,smart_ZU5,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK2	HGNC	ENSG00000145362				67	0	0	50	5	9.09091
ANK2	0	genome.wustl.edu	37	4	114294255	114294255	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	114294255	114294255	A	G	SNP	ANK2	ENST00000357077	human	ensembl	74_37	+1	known	missense	c.11620	p.M3874V	0.988	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,smart_Ankyrin_rpt,smart_ZU5,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK2	HGNC	ENSG00000145362				145	0	0	106	13	10.9244
CAMK2D	0	genome.wustl.edu	37	4	114473243	114473243	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	114473243	114473243	T	C	SNP	CAMK2D	ENST00000454265	human	ensembl	74_37	-1	known	silent	c.285	p.G95	0.258	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ca/CaM-dep_prot_kinase-assoc,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CAMK2D	HGNC	ENSG00000145349				108	0	0	71	7	8.97436
NDST4	0	genome.wustl.edu	37	4	115998016	115998016	+	Silent	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	115998016	115998016	T	A	SNP	NDST4	ENST00000264363	human	ensembl	74_37	-1	known	silent	c.177	p.P59	0.002	pfam_Heparan_SO4_deacetylase	pfam_Heparan_SO4_deacetylase,pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	NDST4	HGNC	ENSG00000138653				97	0	0	70	5	6.66667
TRAM1L1	0	genome.wustl.edu	37	4	118005579	118005579	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	118005579	118005579	A	G	SNP	TRAM1L1	ENST00000310754	human	ensembl	74_37	-1	known	missense	c.971	p.V324A	0.001	smart_TLC-dom,pirsf_Translocation_assoc_membrane,pfscan_TLC-dom	pfam_TRAM1,pfam_TLC-dom,smart_TLC-dom,pirsf_Translocation_assoc_membrane,pfscan_TLC-dom	-	no_errors	TRAM1L1	HGNC	ENSG00000174599				219	0	0	203	15	6.88073
METTL14	0	genome.wustl.edu	37	4	119631199	119631199	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	119631199	119631199	A	G	SNP	METTL14	ENST00000388822	human	ensembl	74_37	+1	known	silent	c.1113	p.A371	0.965	pfscan_MT-A70-like	pfam_MT-A70-like,pfscan_MT-A70-like	-	no_errors	METTL14	HGNC	ENSG00000145388				163	0	0	100	21	17.3554
METTL14	0	genome.wustl.edu	37	4	119631225	119631225	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	119631225	119631225	C	T	SNP	METTL14	ENST00000388822	human	ensembl	74_37	+1	known	missense	c.1139	p.A380V	0.020	pfscan_MT-A70-like	pfam_MT-A70-like,pfscan_MT-A70-like	-	no_errors	METTL14	HGNC	ENSG00000145388				142	0	0	92	6	6.12245
SEC24D	0	genome.wustl.edu	37	4	119644689	119644689	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	119644689	119644689	A	G	SNP	SEC24D	ENST00000379735	human	ensembl	74_37	-1	known	missense	c.3083	p.I1028T	1.000	NULL	pfam_Sec23/24_trunk_dom,pfam_Sec23/24_helical_dom,pfam_Sec23_24_beta_S,pfam_Znf_Sec23_Sec24,pfam_Gelsolin_dom,superfamily_Sec23/24_helical_dom	-	no_errors	SEC24D	HGNC	ENSG00000150961				138	0	0	97	8	7.61905
SEC24D	0	genome.wustl.edu	37	4	119644736	119644736	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	119644736	119644736	G	A	SNP	SEC24D	ENST00000379735	human	ensembl	74_37	-1	known	silent	c.3036	p.Y1012	0.853	NULL	pfam_Sec23/24_trunk_dom,pfam_Sec23/24_helical_dom,pfam_Sec23_24_beta_S,pfam_Znf_Sec23_Sec24,pfam_Gelsolin_dom,superfamily_Sec23/24_helical_dom	-	no_errors	SEC24D	HGNC	ENSG00000150961				149	0	0	113	28	19.8582
SEC24D	0	genome.wustl.edu	37	4	119686061	119686061	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	119686061	119686061	A	G	SNP	SEC24D	ENST00000379735	human	ensembl	74_37	-1	known	missense	c.1195	p.Y399H	1.000	pfam_Znf_Sec23_Sec24	pfam_Sec23/24_trunk_dom,pfam_Sec23/24_helical_dom,pfam_Sec23_24_beta_S,pfam_Znf_Sec23_Sec24,pfam_Gelsolin_dom,superfamily_Sec23/24_helical_dom	-	no_errors	SEC24D	HGNC	ENSG00000150961				124	1	0.8	75	6	7.40741
SYNPO2	0	genome.wustl.edu	37	4	119947952	119947952	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	119947952	119947952	C	A	SNP	SYNPO2	ENST00000307142	human	ensembl	74_37	+1	known	missense	c.428	p.A143D	0.057	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SYNPO2	HGNC	ENSG00000172403				63	0	0	66	6	8.33333
MYOZ2	0	genome.wustl.edu	37	4	120107215	120107215	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	120107215	120107215	T	G	SNP	MYOZ2	ENST00000307128	human	ensembl	74_37	+1	known	missense	c.655	p.F219V	1.000	pfam_Calsarcin-bd	pfam_Calsarcin-bd	-	no_errors	MYOZ2	HGNC	ENSG00000172399				117	0	0	78	7	8.23529
USP53	0	genome.wustl.edu	37	4	120181691	120181691	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	120181691	120181691	C	T	SNP	USP53	ENST00000274030	human	ensembl	74_37	+1	known	silent	c.705	p.R235	0.910	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP53	HGNC	ENSG00000145390				87	0	0	54	4	6.89655
PRDM5	0	genome.wustl.edu	37	4	121719441	121719441	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	121719441	121719441	A	T	SNP	PRDM5	ENST00000264808	human	ensembl	74_37	-1	known	missense	c.1169	p.V390D	1.000	pfam_Znf_C2H2_jaz,smart_Znf_C2H2-like,pirsf_Znf_PRDM5,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_SET_dom,smart_Znf_C2H2-like,pirsf_Znf_PRDM5,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM5	HGNC	ENSG00000138738				46	0	0	37	5	11.9048
PRDM5	0	genome.wustl.edu	37	4	121742449	121742449	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	121742449	121742449	C	G	SNP	PRDM5	ENST00000264808	human	ensembl	74_37	-1	known	missense	c.352	p.E118Q	1.000	smart_SET_dom,pirsf_Znf_PRDM5,pfscan_SET_dom	pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_SET_dom,smart_Znf_C2H2-like,pirsf_Znf_PRDM5,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM5	HGNC	ENSG00000138738				143	0	0	87	13	13
NDNF	0	genome.wustl.edu	37	4	121957507	121957507	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	121957507	121957507	G	A	SNP	NDNF	ENST00000379692	human	ensembl	74_37	-1	known	missense	c.1619	p.S540F	1.000	pfam_DUF2369,superfamily_Fibronectin_type3,smart_Fibronectin_type3	pfam_DUF2369,superfamily_Fibronectin_type3,smart_Fibronectin_type3	-	no_errors	NDNF	HGNC	ENSG00000173376				124	0	0	109	9	7.62712
KIAA1109	0	genome.wustl.edu	37	4	123107245	123107245	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	123107245	123107245	T	C	SNP	KIAA1109	ENST00000264501	human	ensembl	74_37	+1	known	missense	c.413	p.V138A	1.000	NULL	pfam_Fragile_site-assoc_C	-	no_errors	KIAA1109	HGNC	ENSG00000138688				109	0	0	66	5	7.04225
KIAA1109	0	genome.wustl.edu	37	4	123109221	123109221	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	123109221	123109221	T	G	SNP	KIAA1109	ENST00000264501	human	ensembl	74_37	+1	known	missense	c.799	p.Y267D	1.000	NULL	pfam_Fragile_site-assoc_C	-	no_errors	KIAA1109	HGNC	ENSG00000138688				76	0	0	62	4	6.06061
KIAA1109	0	genome.wustl.edu	37	4	123184100	123184100	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	123184100	123184100	G	A	SNP	KIAA1109	ENST00000264501	human	ensembl	74_37	+1	known	missense	c.6944	p.S2315N	1.000	NULL	pfam_Fragile_site-assoc_C	-	no_errors	KIAA1109	HGNC	ENSG00000138688				69	0	0	59	6	9.23077
KIAA1109	0	genome.wustl.edu	37	4	123254921	123254921	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	123254921	123254921	A	G	SNP	KIAA1109	ENST00000264501	human	ensembl	74_37	+1	known	missense	c.11603	p.D3868G	1.000	NULL	pfam_Fragile_site-assoc_C	-	no_errors	KIAA1109	HGNC	ENSG00000138688				50	0	0	33	3	8.33333
KIAA1109	0	genome.wustl.edu	37	4	123257435	123257435	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	123257435	123257435	T	A	SNP	KIAA1109	ENST00000264501	human	ensembl	74_37	+1	known	missense	c.11937	p.S3979R	1.000	NULL	pfam_Fragile_site-assoc_C	-	no_errors	KIAA1109	HGNC	ENSG00000138688				87	0	0	55	6	9.83607
KIAA1109	0	genome.wustl.edu	37	4	123269784	123269784	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	123269784	123269784	A	T	SNP	KIAA1109	ENST00000264501	human	ensembl	74_37	+1	known	missense	c.13192	p.T4398S	0.571	pfam_Fragile_site-assoc_C	pfam_Fragile_site-assoc_C	-	no_errors	KIAA1109	HGNC	ENSG00000138688				62	0	0	50	3	5.66038
ADAD1	0	genome.wustl.edu	37	4	123302219	123302219	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	123302219	123302219	T	A	SNP	ADAD1	ENST00000296513	human	ensembl	74_37	+1	known	missense	c.245	p.I82K	1.000	NULL	pfam_A_deamin,pfam_dsRNA-bd_dom,smart_dsRNA-bd_dom,smart_A_deamin,pfscan_dsRNA-bd_dom,pfscan_A_deamin	-	no_errors	ADAD1	HGNC	ENSG00000164113				125	1	0.793651	76	12	13.6364
NUDT6	0	genome.wustl.edu	37	4	123838694	123838694	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	123838694	123838694	C	T	SNP	NUDT6	ENST00000304430	human	ensembl	74_37	-1	known	missense	c.404	p.R135K	1.000	superfamily_NUDIX_hydrolase_dom-like,prints_Nudix_hydrolase6-like	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like,prints_Nudix_hydrolase6-like	-	no_errors	NUDT6	HGNC	ENSG00000170917				152	0	0	112	13	10.4
NUDT6	0	genome.wustl.edu	37	4	123843587	123843587	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	123843587	123843587	C	A	SNP	NUDT6	ENST00000304430	human	ensembl	74_37	-1	known	missense	c.141	p.Q47H	0.140	NULL	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like,prints_Nudix_hydrolase6-like	-	no_errors	NUDT6	HGNC	ENSG00000170917				32	0	0	27	4	12.9032
SPATA5	0	genome.wustl.edu	37	4	123844395	123844395	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	123844395	123844395	C	T	SNP	SPATA5	ENST00000274008	human	ensembl	74_37	+1	known	missense	c.98	p.P33L	0.001	NULL	pfam_ATPase_AAA_core,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_P-loop_NTPase,superfamily_Asp_de-COase-like_dom,smart_AAA+_ATPase	-	no_errors	SPATA5	HGNC	ENSG00000145375				168	0	0	146	8	5.19481
SPATA5	0	genome.wustl.edu	37	4	123868422	123868422	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	123868422	123868422	C	T	SNP	SPATA5	ENST00000274008	human	ensembl	74_37	+1	known	missense	c.1493	p.A498V	1.000	pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_ATPase_AAA_core,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_P-loop_NTPase,superfamily_Asp_de-COase-like_dom,smart_AAA+_ATPase	-	no_errors	SPATA5	HGNC	ENSG00000145375				27	0	0	32	2	5.88235
ANKRD50	0	genome.wustl.edu	37	4	125590911	125590911	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	125590911	125590911	C	T	SNP	ANKRD50	ENST00000504087	human	ensembl	74_37	-1	known	missense	c.3521	p.R1174Q	0.996	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD50	HGNC	ENSG00000151458				120	0	0	85	27	24.1071
ANKRD50	0	genome.wustl.edu	37	4	125591399	125591399	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	125591399	125591399	T	C	SNP	ANKRD50	ENST00000504087	human	ensembl	74_37	-1	known	silent	c.3033	p.E1011	0.999	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD50	HGNC	ENSG00000151458				71	0	0	56	4	6.66667
ANKRD50	0	genome.wustl.edu	37	4	125591412	125591412	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	125591412	125591412	G	T	SNP	ANKRD50	ENST00000504087	human	ensembl	74_37	-1	known	missense	c.3020	p.A1007D	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD50	HGNC	ENSG00000151458				74	0	0	55	6	9.83607
FAT4	0	genome.wustl.edu	37	4	126239682	126239682	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	126239682	126239682	A	G	SNP	FAT4	ENST00000394329	human	ensembl	74_37	+1	known	missense	c.2116	p.S706G	1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159				86	0	0	78	7	8.23529
FAT4	0	genome.wustl.edu	37	4	126241702	126241702	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	126241702	126241702	A	T	SNP	FAT4	ENST00000394329	human	ensembl	74_37	+1	known	missense	c.4136	p.D1379V	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159				187	0	0	157	9	5.42169
FAT4	0	genome.wustl.edu	37	4	126371457	126371457	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	126371457	126371457	G	A	SNP	FAT4	ENST00000394329	human	ensembl	74_37	+1	known	missense	c.9286	p.A3096T	0.200	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159				94	0	0	59	6	9.23077
FAT4	0	genome.wustl.edu	37	4	126373323	126373323	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	126373323	126373323	G	A	SNP	FAT4	ENST00000394329	human	ensembl	74_37	+1	known	missense	c.11152	p.G3718S	0.000	NULL	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159				197	0	0	160	16	9.09091
FAT4	0	genome.wustl.edu	37	4	126411099	126411099	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	126411099	126411099	A	C	SNP	FAT4	ENST00000394329	human	ensembl	74_37	+1	known	missense	c.13122	p.E4374D	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159				250	0	0	229	56	19.6491
FAT4	0	genome.wustl.edu	37	4	126412663	126412663	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	126412663	126412663	C	T	SNP	FAT4	ENST00000394329	human	ensembl	74_37	+1	known	missense	c.14686	p.R4896C	1.000	NULL	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159				71	0	0	53	18	25.3521
INTU	0	genome.wustl.edu	37	4	128584698	128584698	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	128584698	128584698	T	C	SNP	INTU	ENST00000335251	human	ensembl	74_37	+1	known	missense	c.931	p.Y311H	1.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	INTU	HGNC	ENSG00000164066				133	0	0	82	9	9.89011
INTU	0	genome.wustl.edu	37	4	128627710	128627710	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	128627710	128627710	A	G	SNP	INTU	ENST00000335251	human	ensembl	74_37	+1	known	silent	c.1857	p.G619	0.994	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	INTU	HGNC	ENSG00000164066				172	0	0	141	12	7.84314
HSPA4L	0	genome.wustl.edu	37	4	128724795	128724795	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	128724795	128724795	T	C	SNP	HSPA4L	ENST00000439123	human	ensembl	74_37	+1	known	silent	c.768	p.T256	0.996	pfam_Hsp_70_fam,pfam_MreB_Mrl	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPA4L	HGNC	ENSG00000164070				111	0	0	68	5	6.84932
SCLT1	0	genome.wustl.edu	37	4	129812262	129812262	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	129812262	129812262	G	A	SNP	SCLT1	ENST00000281142	human	ensembl	74_37	-1	known	silent	c.1860	p.T620	1.000	NULL	NULL	-	no_errors	SCLT1	HGNC	ENSG00000151466				123	1	0.806452	87	5	5.43478
SCLT1	0	genome.wustl.edu	37	4	129886438	129886438	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	129886438	129886438	T	G	SNP	SCLT1	ENST00000281142	human	ensembl	74_37	-1	known	missense	c.813	p.E271D	1.000	NULL	NULL	-	no_errors	SCLT1	HGNC	ENSG00000151466				130	0	0	87	6	6.45161
SCLT1	0	genome.wustl.edu	37	4	129920859	129920859	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	129920859	129920859	G	A	SNP	SCLT1	ENST00000281142	human	ensembl	74_37	-1	known	nonsense	c.517	p.Q173*	0.996	NULL	NULL	-	no_errors	SCLT1	HGNC	ENSG00000151466				102	0	0	51	13	20.3125
MAEA	0	genome.wustl.edu	37	4	1333015	1333015	+	RNA	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	1333015	1333015	G	A	SNP	MAEA	ENST00000512289	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.007	-	-	-	no_errors	MAEA	HGNC	ENSG00000090316				29	0	0	26	8	23.5294
PCDH10	0	genome.wustl.edu	37	4	134071888	134071888	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	134071888	134071888	G	A	SNP	PCDH10	ENST00000264360	human	ensembl	74_37	+1	known	missense	c.593	p.R198H	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH10	HGNC	ENSG00000138650				49	0	0	39	4	9.30233
PCDH10	0	genome.wustl.edu	37	4	134073029	134073029	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	134073029	134073029	A	G	SNP	PCDH10	ENST00000264360	human	ensembl	74_37	+1	known	silent	c.1734	p.L578	0.818	superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH10	HGNC	ENSG00000138650				61	0	0	58	4	6.45161
PCDH10	0	genome.wustl.edu	37	4	134073742	134073742	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	134073742	134073742	A	G	SNP	PCDH10	ENST00000264360	human	ensembl	74_37	+1	known	missense	c.2447	p.N816S	1.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH10	HGNC	ENSG00000138650				34	0	0	33	4	10.8108
UVSSA	0	genome.wustl.edu	37	4	1347004	1347004	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	1347004	1347004	G	A	SNP	UVSSA	ENST00000389851	human	ensembl	74_37	+1	known	missense	c.737	p.R246Q	0.001	NULL	pfam_DUF2043,superfamily_ENTH_VHS	-	no_errors	UVSSA	HGNC	ENSG00000163945				38	0	0	45	6	11.7647
BOD1L1	0	genome.wustl.edu	37	4	13590398	13590398	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	13590398	13590398	T	C	SNP	BOD1L1	ENST00000040738	human	ensembl	74_37	-1	known	missense	c.8228	p.K2743R	0.989	NULL	NULL	-	no_errors	BOD1L1	HGNC	ENSG00000038219				43	0	0	19	4	17.3913
BOD1L1	0	genome.wustl.edu	37	4	13603610	13603610	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	13603610	13603610	G	A	SNP	BOD1L1	ENST00000040738	human	ensembl	74_37	-1	known	silent	c.4914	p.I1638	0.000	NULL	NULL	-	no_errors	BOD1L1	HGNC	ENSG00000038219				260	1	0.383142	211	47	18.2171
PCDH18	0	genome.wustl.edu	37	4	138451511	138451511	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	138451511	138451511	C	A	SNP	PCDH18	ENST00000344876	human	ensembl	74_37	-1	known	missense	c.1732	p.G578W	0.067	superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH18	HGNC	ENSG00000189184				224	0	0	212	16	7.01754
CRIPAK	0	genome.wustl.edu	37	4	1388760	1388760	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	1388760	1388760	G	A	SNP	CRIPAK	ENST00000324803	human	ensembl	74_37	+1	known	missense	c.461	p.R154Q	0.004	NULL	smart_Post-SET_dom	-	no_errors	CRIPAK	HGNC	ENSG00000179979				173	0	0	176	12	6.38298
CRIPAK	0	genome.wustl.edu	37	4	1389092	1389092	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	1389092	1389092	C	T	SNP	CRIPAK	ENST00000324803	human	ensembl	74_37	+1	known	missense	c.793	p.P265S	0.011	smart_Post-SET_dom	smart_Post-SET_dom	-	no_errors	CRIPAK	HGNC	ENSG00000179979				273	0	0	238	22	8.46154
SLC7A11	0	genome.wustl.edu	37	4	139103485	139103485	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	139103485	139103485	C	T	SNP	SLC7A11	ENST00000280612	human	ensembl	74_37	-1	known	missense	c.1082	p.R361H	1.000	pfam_AA-permease/SLC12A_dom,pirsf_AA/rel_permease1,tigrfam_L_AA_transporter	pfam_AA-permease/SLC12A_dom,pfam_AA_transpt_TM,pirsf_AA/rel_permease1,tigrfam_L_AA_transporter	-	no_errors	SLC7A11	HGNC	ENSG00000151012				89	0	0	74	8	9.7561
NAA15	0	genome.wustl.edu	37	4	140265423	140265423	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	140265423	140265423	A	T	SNP	NAA15	ENST00000296543	human	ensembl	74_37	+1	known	missense	c.621	p.R207S	1.000	pirsf_NatA_aux_su	pfam_NatA_aux_su,smart_TPR_repeat,pirsf_NatA_aux_su,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	NAA15	HGNC	ENSG00000164134				152	0	0	102	8	7.27273
MAML3	0	genome.wustl.edu	37	4	140641423	140641423	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	140641423	140641423	C	T	SNP	MAML3	ENST00000509479	human	ensembl	74_37	-1	known	missense	c.2471	p.R824Q	1.000	NULL	pfam_Neuroggenic_mastermind-like_N	-	no_errors	MAML3	HGNC	ENSG00000196782				93	0	0	100	13	11.5044
MAML3	0	genome.wustl.edu	37	4	140811420	140811420	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	140811420	140811420	C	T	SNP	MAML3	ENST00000509479	human	ensembl	74_37	-1	known	silent	c.1170	p.T390	0.583	NULL	pfam_Neuroggenic_mastermind-like_N	-	no_errors	MAML3	HGNC	ENSG00000196782				112	0	0	119	12	9.16031
MAML3	0	genome.wustl.edu	37	4	140811851	140811851	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	140811851	140811851	C	A	SNP	MAML3	ENST00000509479	human	ensembl	74_37	-1	known	missense	c.739	p.G247C	1.000	NULL	pfam_Neuroggenic_mastermind-like_N	-	no_errors	MAML3	HGNC	ENSG00000196782				134	1	0.740741	104	19	15.4472
CLGN	0	genome.wustl.edu	37	4	141310438	141310438	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	141310438	141310438	G	A	SNP	CLGN	ENST00000325617	human	ensembl	74_37	-1	known	silent	c.1773	p.S591	0.989	NULL	pfam_Calret/calnex,superfamily_ConA-like_lec_gl_sf,superfamily_Calreticulin/calnexin_P_dom,prints_Calret/calnex	-	no_errors	CLGN	HGNC	ENSG00000153132				118	0	0	69	7	9.21053
CLGN	0	genome.wustl.edu	37	4	141321662	141321662	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	141321662	141321662	T	C	SNP	CLGN	ENST00000325617	human	ensembl	74_37	-1	known	silent	c.543	p.G181	0.998	pfam_Calret/calnex,superfamily_ConA-like_lec_gl_sf,prints_Calret/calnex	pfam_Calret/calnex,superfamily_ConA-like_lec_gl_sf,superfamily_Calreticulin/calnexin_P_dom,prints_Calret/calnex	-	no_errors	CLGN	HGNC	ENSG00000153132				85	0	0	54	6	10
RNF150	0	genome.wustl.edu	37	4	142053845	142053845	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	142053845	142053845	A	G	SNP	RNF150	ENST00000515673	human	ensembl	74_37	-1	known	missense	c.118	p.Y40H	1.000	NULL	pfam_Protease-assoc_domain,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF150	HGNC	ENSG00000170153				59	0	0	33	15	31.25
INPP4B	0	genome.wustl.edu	37	4	143067143	143067143	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	143067143	143067143	C	T	SNP	INPP4B	ENST00000509777	human	ensembl	74_37	-1	known	missense	c.1570	p.V524M	1.000	NULL	superfamily_C2_dom	-	no_errors	INPP4B	HGNC	ENSG00000109452				146	0	0	108	13	10.7438
INPP4B	0	genome.wustl.edu	37	4	143181673	143181673	+	Silent	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	143181673	143181673	T	G	SNP	INPP4B	ENST00000509777	human	ensembl	74_37	-1	known	silent	c.660	p.G220	0.022	NULL	superfamily_C2_dom	-	no_errors	INPP4B	HGNC	ENSG00000109452				59	0	0	40	3	6.97674
USP38	0	genome.wustl.edu	37	4	144127279	144127279	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	144127279	144127279	A	G	SNP	USP38	ENST00000307017	human	ensembl	74_37	+1	known	missense	c.1303	p.R435G	1.000	NULL	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP38	HGNC	ENSG00000170185				98	0	0	60	8	11.7647
GAB1	0	genome.wustl.edu	37	4	144380563	144380563	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	144380563	144380563	A	G	SNP	GAB1	ENST00000262995	human	ensembl	74_37	+1	known	silent	c.1701	p.K567	1.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	GAB1	HGNC	ENSG00000109458				256	0	0	189	14	6.89655
SMARCA5	0	genome.wustl.edu	37	4	144468578	144468578	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	144468578	144468578	G	A	SNP	SMARCA5	ENST00000283131	human	ensembl	74_37	+1	known	silent	c.2694	p.E898	1.000	pfam_SLIDE,superfamily_Homeodomain-like	pfam_SNF2_N,pfam_SLIDE,pfam_ISWI_HAND-dom,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_HDA_complex_subunit-2/3,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,superfamily_Homeodomain-like,superfamily_ISWI_HAND-dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_SANT/Myb,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SMARCA5	HGNC	ENSG00000153147				113	0	0	80	7	8.04598
OTUD4	0	genome.wustl.edu	37	4	146059221	146059221	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	146059221	146059221	A	G	SNP	OTUD4	ENST00000447906	human	ensembl	74_37	-1	known	silent	c.2706	p.D902	0.977	NULL	pfam_OTU,pfscan_OTU	-	no_errors	OTUD4	HGNC	ENSG00000164164				81	0	0	45	3	6.25
OTUD4	0	genome.wustl.edu	37	4	146065564	146065564	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	146065564	146065564	G	T	SNP	OTUD4	ENST00000447906	human	ensembl	74_37	-1	known	missense	c.1445	p.A482D	0.985	NULL	pfam_OTU,pfscan_OTU	-	no_errors	OTUD4	HGNC	ENSG00000164164				179	0	0	131	39	22.9412
SMAD1	0	genome.wustl.edu	37	4	146468016	146468016	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	146468016	146468016	C	T	SNP	SMAD1	ENST00000302085	human	ensembl	74_37	+1	known	silent	c.937	p.L313	1.000	pfam_SMAD_dom_Dwarfin-type,superfamily_SMAD_FHA_domain,smart_SMAD_dom_Dwarfin-type,pfscan_SMAD_dom_Dwarfin-type	pfam_SMAD_dom_Dwarfin-type,pfam_MAD_homology1_Dwarfin-type,pfam_Interferon_reg_factor-3,superfamily_SMAD_FHA_domain,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,smart_SMAD_dom_Dwarfin-type,pfscan_MAD_homology_MH1,pfscan_SMAD_dom_Dwarfin-type	-	no_errors	SMAD1	HGNC	ENSG00000170365				169	0	0	101	8	7.33945
ZNF827	0	genome.wustl.edu	37	4	146806922	146806922	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	146806922	146806922	T	C	SNP	ZNF827	ENST00000508784	human	ensembl	74_37	-1	known	missense	c.1655	p.D552G	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF827	HGNC	ENSG00000151612				85	0	0	81	6	6.89655
ARHGAP10	0	genome.wustl.edu	37	4	148993239	148993239	+	RNA	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	148993239	148993239	G	A	SNP	ARHGAP10	ENST00000510076	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	ARHGAP10	HGNC	ENSG00000071205				76	0	0	68	8	10.5263
CPEB2	0	genome.wustl.edu	37	4	15018811	15018811	+	Splice_Site	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	15018811	15018811	G	A	SNP	CPEB2	ENST00000538197	human	ensembl	74_37	+1	known	splice_site	c.2035-1	e4-1	1.000	-	-	-	no_errors	CPEB2	HGNC	ENSG00000137449				75	0	0	55	5	8.33333
MAB21L2	0	genome.wustl.edu	37	4	151504543	151504543	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	151504543	151504543	G	C	SNP	MAB21L2	ENST00000317605	human	ensembl	74_37	+1	known	missense	c.362	p.G121A	1.000	pfam_Mab-21_dom	pfam_Mab-21_dom,pfscan_Ricin_B_lectin	-	no_errors	MAB21L2	HGNC	ENSG00000181541				91	0	0	84	10	10.6383
SH3D19	0	genome.wustl.edu	37	4	152065098	152065098	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	152065098	152065098	G	A	SNP	SH3D19	ENST00000304527	human	ensembl	74_37	-1	known	silent	c.1416	p.I472	1.000	superfamily_SH3_domain,smart_SH3_domain	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_p67phox,prints_SH3_domain	-	no_errors	SH3D19	HGNC	ENSG00000109686				97	0	0	75	7	8.53659
TIGD4	0	genome.wustl.edu	37	4	153690946	153690946	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	153690946	153690946	G	T	SNP	TIGD4	ENST00000304337	human	ensembl	74_37	-1	known	missense	c.1211	p.A404D	0.964	NULL	pfam_DDE_SF_endonuclease_CENPB-like,pfam_HTH_CenpB_DNA-bd_dom,pfam_HTH_Psq,pfam_Centromere_CenpB_dimerisation,superfamily_Homeodomain-like,smart_HTH_CenpB_DNA-bd_dom,pfscan_HTH_Psq	-	no_errors	TIGD4	HGNC	ENSG00000169989				105	0	0	91	12	11.6505
FHDC1	0	genome.wustl.edu	37	4	153896633	153896633	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	153896633	153896633	T	C	SNP	FHDC1	ENST00000260008	human	ensembl	74_37	+1	known	silent	c.2190	p.D730	0.000	NULL	pfam_FH2_Formin,smart_FH2_Formin	-	no_errors	FHDC1	HGNC	ENSG00000137460				29	0	0	37	7	15.9091
TRIM2	0	genome.wustl.edu	37	4	154216755	154216755	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	154216755	154216755	C	T	SNP	TRIM2	ENST00000338700	human	ensembl	74_37	+1	known	silent	c.1077	p.G359	0.996	pfam_Filamin/ABP280_repeat-like,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_NHL_repeat,pfam_Filamin/ABP280_repeat-like,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_Ig_E-set,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Filamin,pfscan_Filamin/ABP280_repeat-like,pfscan_NHL_repeat_subgr,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM2	HGNC	ENSG00000109654				36	0	0	35	8	18.6047
KIAA0922	0	genome.wustl.edu	37	4	154508908	154508908	+	Silent	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	154508908	154508908	T	G	SNP	KIAA0922	ENST00000409959	human	ensembl	74_37	+1	known	silent	c.1497	p.G499	1.000	NULL	pfam_DUF3651_TMEM131	-	no_errors	KIAA0922	HGNC	ENSG00000121210				220	0	0	142	11	7.18954
TLR2	0	genome.wustl.edu	37	4	154624623	154624623	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	154624623	154624623	C	T	SNP	TLR2	ENST00000260010	human	ensembl	74_37	+1	known	silent	c.564	p.S188	0.000	pirsf_Toll-like_receptor	pirsf_Toll-like_receptor,pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR2	HGNC	ENSG00000137462				113	0	0	86	7	7.52688
TLR2	0	genome.wustl.edu	37	4	154625730	154625730	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	154625730	154625730	T	C	SNP	TLR2	ENST00000260010	human	ensembl	74_37	+1	known	silent	c.1671	p.D557	0.938	pirsf_Toll-like_receptor,smart_Cys-rich_flank_reg_C	pirsf_Toll-like_receptor,pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR2	HGNC	ENSG00000137462				120	0	0	95	12	11.215
DCHS2	0	genome.wustl.edu	37	4	155156833	155156833	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	155156833	155156833	C	T	SNP	DCHS2	ENST00000357232	human	ensembl	74_37	-1	known	missense	c.7606	p.A2536T	0.000	NULL	pfam_Cadherin,pfam_HTH_CenpB_DNA-bd_dom,superfamily_Cadherin-like,superfamily_Homeodomain-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	DCHS2	HGNC	ENSG00000197410				56	0	0	42	13	23.6364
DCHS2	0	genome.wustl.edu	37	4	155157336	155157336	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	155157336	155157336	T	A	SNP	DCHS2	ENST00000357232	human	ensembl	74_37	-1	known	missense	c.7103	p.D2368V	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_HTH_CenpB_DNA-bd_dom,superfamily_Cadherin-like,superfamily_Homeodomain-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	DCHS2	HGNC	ENSG00000197410				116	0	0	88	10	10.2041
FGA	0	genome.wustl.edu	37	4	155509977	155509977	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	155509977	155509977	T	C	SNP	FGA	ENST00000302053	human	ensembl	74_37	-1	known	missense	c.332	p.E111G	0.394	pfam_Fibrinogen_a/b/g_coil_dom	pfam_Fibrinogen_a/b/g_C_dom,pfam_Fibrinogen_a/b/g_coil_dom,pfam_Fibrinogen_aC,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	-	no_errors	FGA	HGNC	ENSG00000171560				292	1	0.341297	188	20	9.61538
FGA	0	genome.wustl.edu	37	4	155510666	155510666	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	155510666	155510666	G	A	SNP	FGA	ENST00000302053	human	ensembl	74_37	-1	known	missense	c.103	p.R35C	0.996	NULL	pfam_Fibrinogen_a/b/g_C_dom,pfam_Fibrinogen_a/b/g_coil_dom,pfam_Fibrinogen_aC,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	-	no_errors	FGA	HGNC	ENSG00000171560				146	1	0.680272	122	12	8.95522
FBXL5	0	genome.wustl.edu	37	4	15614035	15614035	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	15614035	15614035	A	C	SNP	FBXL5	ENST00000341285	human	ensembl	74_37	-1	known	missense	c.1853	p.V618G	0.411	smart_Leu-rich_rpt_Cys-con_subtyp	pfam_F-box_dom,pfam_Leu-rich_rpt,superfamily_F-box_dom,smart_F-box_dom,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_F-box_dom	-	no_errors	FBXL5	HGNC	ENSG00000118564				54	0	0	46	4	8
GUCY1A3	0	genome.wustl.edu	37	4	156625120	156625120	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	156625120	156625120	G	A	SNP	GUCY1A3	ENST00000296518	human	ensembl	74_37	+1	known	missense	c.292	p.A98T	0.988	pfam_Heme_NO-bd,superfamily_NO_sig/Golgi_transp_ligand-bd	pfam_A/G_cyclase,pfam_Haem_no_assoc-bd,pfam_Heme_NO-bd,superfamily_A/G_cyclase,superfamily_NO_sig/Golgi_transp_ligand-bd,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	GUCY1A3	HGNC	ENSG00000164116				182	0	0	124	9	6.76692
GUCY1A3	0	genome.wustl.edu	37	4	156629407	156629407	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	156629407	156629407	G	T	SNP	GUCY1A3	ENST00000296518	human	ensembl	74_37	+1	known	missense	c.337	p.D113Y	1.000	pfam_Heme_NO-bd,superfamily_NO_sig/Golgi_transp_ligand-bd	pfam_A/G_cyclase,pfam_Haem_no_assoc-bd,pfam_Heme_NO-bd,superfamily_A/G_cyclase,superfamily_NO_sig/Golgi_transp_ligand-bd,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	GUCY1A3	HGNC	ENSG00000164116				129	1	0.769231	96	7	6.79612
GUCY1A3	0	genome.wustl.edu	37	4	156632185	156632185	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	156632185	156632185	T	A	SNP	GUCY1A3	ENST00000296518	human	ensembl	74_37	+1	known	missense	c.868	p.F290I	1.000	pfam_Haem_no_assoc-bd	pfam_A/G_cyclase,pfam_Haem_no_assoc-bd,pfam_Heme_NO-bd,superfamily_A/G_cyclase,superfamily_NO_sig/Golgi_transp_ligand-bd,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	GUCY1A3	HGNC	ENSG00000164116				76	0	0	59	12	16.9014
GUCY1B3	0	genome.wustl.edu	37	4	156723547	156723547	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	156723547	156723547	G	A	SNP	GUCY1B3	ENST00000264424	human	ensembl	74_37	+1	known	missense	c.1229	p.R410H	1.000	superfamily_A/G_cyclase,smart_A/G_cyclase	pfam_Haem_no_assoc-bd,pfam_A/G_cyclase,pfam_Heme_NO-bd,superfamily_A/G_cyclase,superfamily_NO_sig/Golgi_transp_ligand-bd,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	GUCY1B3	HGNC	ENSG00000061918				92	0	0	58	21	26.5823
CTSO	0	genome.wustl.edu	37	4	156858514	156858514	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	156858514	156858514	C	A	SNP	CTSO	ENST00000433477	human	ensembl	74_37	-1	known	missense	c.674	p.S225I	1.000	pfam_Peptidase_C1A_C,smart_Peptidase_C1A_C	pfam_Peptidase_C1A_C,smart_Peptidase_C1A_C,prints_Peptidase_C1A_C	-	no_errors	CTSO	HGNC	ENSG00000256043				76	0	0	45	4	8.16327
FAM198B	0	genome.wustl.edu	37	4	159052070	159052070	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	159052070	159052070	T	C	SNP	FAM198B	ENST00000393807	human	ensembl	74_37	-1	known	missense	c.1244	p.Q415R	0.598	NULL	NULL	-	no_errors	FAM198B	HGNC	ENSG00000164125				66	0	0	51	4	7.27273
PPID	0	genome.wustl.edu	37	4	159640370	159640370	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	159640370	159640370	A	G	SNP	PPID	ENST00000307720	human	ensembl	74_37	-1	known	missense	c.295	p.Y99H	1.000	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom	pfam_Cyclophilin-like_PPIase_dom,pfam_TPR_1,superfamily_Cyclophilin-like_PPIase_dom,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	PPID	HGNC	ENSG00000171497				77	0	0	47	9	16.0714
FGFBP2	0	genome.wustl.edu	37	4	15964674	15964674	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	15964674	15964674	C	A	SNP	FGFBP2	ENST00000259989	human	ensembl	74_37	-1	known	nonsense	c.79	p.G27*	0.028	pfam_FGF1-bd	pfam_FGF1-bd	-	no_errors	FGFBP2	HGNC	ENSG00000137441				78	0	0	70	7	9.09091
PROM1	0	genome.wustl.edu	37	4	15994012	15994012	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	15994012	15994012	A	G	SNP	PROM1	ENST00000447510	human	ensembl	74_37	-1	known	silent	c.1770	p.H590	0.102	pfam_Prominin	pfam_Prominin	-	no_errors	PROM1	HGNC	ENSG00000007062				87	0	0	74	6	7.5
RAPGEF2	0	genome.wustl.edu	37	4	160252876	160252876	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	160252876	160252876	C	A	SNP	RAPGEF2	ENST00000264431	human	ensembl	74_37	+1	known	missense	c.1187	p.P396H	1.000	superfamily_Ras_GEF_dom,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_RasGRF_CDC25,pfam_Ras-assoc,pfam_Ras-like_Gua-exchang_fac_N,pfam_PDZ,pfam_cNMP-bd_dom,superfamily_Ras_GEF_dom,superfamily_PDZ,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_Ras-like_Gua-exchang_fac_N,smart_PDZ,smart_Ras-assoc,smart_RasGRF_CDC25,pfscan_cNMP-bd_dom,pfscan_PDZ,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RAPGEF2	HGNC	ENSG00000109756				151	0	0	91	32	26.0163
RAPGEF2	0	genome.wustl.edu	37	4	160264153	160264153	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	160264153	160264153	G	A	SNP	RAPGEF2	ENST00000264431	human	ensembl	74_37	+1	known	missense	c.2458	p.A820T	1.000	pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_RasGRF_CDC25,pfam_Ras-assoc,pfam_Ras-like_Gua-exchang_fac_N,pfam_PDZ,pfam_cNMP-bd_dom,superfamily_Ras_GEF_dom,superfamily_PDZ,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_Ras-like_Gua-exchang_fac_N,smart_PDZ,smart_Ras-assoc,smart_RasGRF_CDC25,pfscan_cNMP-bd_dom,pfscan_PDZ,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RAPGEF2	HGNC	ENSG00000109756				48	0	0	25	11	30.5556
TAPT1	0	genome.wustl.edu	37	4	16188435	16188435	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	16188435	16188435	T	C	SNP	TAPT1	ENST00000405303	human	ensembl	74_37	-1	known	missense	c.815	p.K272R	1.000	pfam_Membrane_Tatp1/CMV_rcpt	pfam_Membrane_Tatp1/CMV_rcpt	-	no_errors	TAPT1	HGNC	ENSG00000169762				128	0	0	67	7	9.45946
TKTL2	0	genome.wustl.edu	37	4	164393149	164393149	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	164393149	164393149	C	T	SNP	TKTL2	ENST00000280605	human	ensembl	74_37	-1	known	missense	c.1738	p.V580I	0.907	pfam_Transketolase_C,superfamily_Transketo_C/Pyr-ferredox_oxred	pfam_Transketolase_N,pfam_Transketolase-like_Pyr-bd,pfam_Transketolase_C,pfam_DH_E1,superfamily_Transketo_C/Pyr-ferredox_oxred,smart_Transketolase-like_Pyr-bd	-	no_errors	TKTL2	HGNC	ENSG00000151005				95	0	0	60	24	28.5714
LDB2	0	genome.wustl.edu	37	4	16504355	16504355	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	16504355	16504355	C	T	SNP	LDB2	ENST00000304523	human	ensembl	74_37	-1	known	missense	c.1033	p.A345T	1.000	NULL	NULL	-	no_errors	LDB2	HGNC	ENSG00000169744				206	0	0	167	47	21.9626
FAM53A	0	genome.wustl.edu	37	4	1656868	1656868	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	1656868	1656868	C	T	SNP	FAM53A	ENST00000308132	human	ensembl	74_37	-1	known	missense	c.719	p.S240N	0.744	NULL	NULL	-	no_errors	FAM53A	HGNC	ENSG00000174137				13	0	0	21	4	16
KLHL2	0	genome.wustl.edu	37	4	166159928	166159928	+	Splice_Site	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	166159928	166159928	A	G	SNP	KLHL2	ENST00000226725	human	ensembl	74_37	+1	known	splice_site	c.260-2	e4-2	0.999	-	-	-	no_errors	KLHL2	HGNC	ENSG00000109466				50	0	0	41	4	8.88889
KLHL2	0	genome.wustl.edu	37	4	166160009	166160009	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	166160009	166160009	T	C	SNP	KLHL2	ENST00000226725	human	ensembl	74_37	+1	known	silent	c.339	p.Y113	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL2	HGNC	ENSG00000109466				130	1	0.763359	103	10	8.84956
KLHL2	0	genome.wustl.edu	37	4	166232671	166232671	+	Silent	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	166232671	166232671	T	A	SNP	KLHL2	ENST00000226725	human	ensembl	74_37	+1	known	silent	c.1293	p.A431	0.000	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL2	HGNC	ENSG00000109466				152	0	0	113	17	13.0769
TLL1	0	genome.wustl.edu	37	4	166913959	166913959	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	166913959	166913959	G	T	SNP	TLL1	ENST00000061240	human	ensembl	74_37	+1	known	missense	c.284	p.G95V	1.000	pirsf_BMP_1/tolloid-like	pfam_CUB_dom,pfam_Peptidase_M12A,pfam_EGF-like_Ca-bd_dom,superfamily_CUB_dom,smart_Peptidase_Metallo,smart_CUB_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pirsf_BMP_1/tolloid-like,pfscan_CUB_dom,pfscan_EG-like_dom,prints_Peptidase_M12A	-	no_errors	TLL1	HGNC	ENSG00000038295				92	0	0	78	5	6.0241
TLL1	0	genome.wustl.edu	37	4	166924671	166924671	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	166924671	166924671	G	A	SNP	TLL1	ENST00000061240	human	ensembl	74_37	+1	known	missense	c.761	p.R254K	1.000	pfam_Peptidase_M12A,smart_Peptidase_Metallo,pirsf_BMP_1/tolloid-like,prints_Peptidase_M12A	pfam_CUB_dom,pfam_Peptidase_M12A,pfam_EGF-like_Ca-bd_dom,superfamily_CUB_dom,smart_Peptidase_Metallo,smart_CUB_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pirsf_BMP_1/tolloid-like,pfscan_CUB_dom,pfscan_EG-like_dom,prints_Peptidase_M12A	-	no_errors	TLL1	HGNC	ENSG00000038295				63	0	0	56	9	13.8462
SPOCK3	0	genome.wustl.edu	37	4	167655903	167655903	+	RNA	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	167655903	167655903	T	C	SNP	SPOCK3	ENST00000507137	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.995	-	-	-	no_errors	SPOCK3	HGNC	ENSG00000196104				40	0	0	29	4	12.1212
SPOCK3	0	genome.wustl.edu	37	4	167656082	167656082	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	167656082	167656082	A	G	SNP	SPOCK3	ENST00000357154	human	ensembl	74_37	-1	known	missense	c.1301	p.V434A	1.000	NULL	pfam_SPARC/Testican_Ca-bd-dom,pfam_Thyroglobulin_1,pfam_Kazal_dom,superfamily_Thyroglobulin_1,smart_Kazal_dom,smart_Thyroglobulin_1,pfscan_Thyroglobulin_1	-	no_errors	SPOCK3	HGNC	ENSG00000196104				66	0	0	41	7	14.5833
SPOCK3	0	genome.wustl.edu	37	4	167675702	167675702	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	167675702	167675702	T	A	SNP	SPOCK3	ENST00000357154	human	ensembl	74_37	-1	known	missense	c.897	p.L299F	1.000	pfam_SPARC/Testican_Ca-bd-dom	pfam_SPARC/Testican_Ca-bd-dom,pfam_Thyroglobulin_1,pfam_Kazal_dom,superfamily_Thyroglobulin_1,smart_Kazal_dom,smart_Thyroglobulin_1,pfscan_Thyroglobulin_1	-	no_errors	SPOCK3	HGNC	ENSG00000196104				110	0	0	75	10	11.7647
ANXA10	0	genome.wustl.edu	37	4	169099117	169099117	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	169099117	169099117	A	G	SNP	ANXA10	ENST00000359299	human	ensembl	74_37	+1	known	missense	c.611	p.Y204C	1.000	pfam_Annexin_repeat,smart_Annexin_repeat,prints_Annexin	pfam_Annexin_repeat,smart_Annexin_repeat,prints_Annexin,prints_AnnexinX	-	no_errors	ANXA10	HGNC	ENSG00000109511				86	0	0	57	8	12.3077
DDX60	0	genome.wustl.edu	37	4	169176911	169176911	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	169176911	169176911	C	T	SNP	DDX60	ENST00000393743	human	ensembl	74_37	-1	known	missense	c.3508	p.A1170T	0.000	superfamily_P-loop_NTPase	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX60	HGNC	ENSG00000137628				99	0	0	60	7	10.4478
DDX60	0	genome.wustl.edu	37	4	169176992	169176992	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	169176992	169176992	C	T	SNP	DDX60	ENST00000393743	human	ensembl	74_37	-1	known	missense	c.3427	p.A1143T	0.455	superfamily_P-loop_NTPase	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX60	HGNC	ENSG00000137628				80	0	0	43	15	25.8621
DDX60L	0	genome.wustl.edu	37	4	169294923	169294923	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	169294923	169294923	A	G	SNP	DDX60L	ENST00000260184	human	ensembl	74_37	-1	known	missense	c.4670	p.V1557A	0.998	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX60L	HGNC	ENSG00000181381				204	0	0	129	14	9.79021
DDX60L	0	genome.wustl.edu	37	4	169322010	169322010	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	169322010	169322010	A	G	SNP	DDX60L	ENST00000260184	human	ensembl	74_37	-1	known	missense	c.3458	p.V1153A	0.000	superfamily_P-loop_NTPase	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX60L	HGNC	ENSG00000181381				49	0	0	53	3	5.35714
PALLD	0	genome.wustl.edu	37	4	169433123	169433123	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	169433123	169433123	G	A	SNP	PALLD	ENST00000261509	human	ensembl	74_37	+1	known	silent	c.468	p.T156	0.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	PALLD	HGNC	ENSG00000129116				69	0	0	54	16	22.8571
CLCN3	0	genome.wustl.edu	37	4	170613350	170613350	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	170613350	170613350	C	A	SNP	CLCN3	ENST00000347613	human	ensembl	74_37	+1	known	missense	c.815	p.A272D	1.000	pfam_Cl-channel_volt-gated,superfamily_Cl-channel_core,prints_Cl-channel_volt-gated	pfam_Cl-channel_volt-gated,pfam_CBS_dom,superfamily_Cl-channel_core,smart_CBS_dom,prints_Cl-channel_volt-gated,prints_Cl_channel-3	-	no_errors	CLCN3	HGNC	ENSG00000109572				248	0	0	156	20	11.3636
C4orf27	0	genome.wustl.edu	37	4	170663209	170663209	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	170663209	170663209	T	C	SNP	C4orf27	ENST00000393381	human	ensembl	74_37	-1	known	missense	c.547	p.N183D	0.005	pfam_DUF2228_C2H2_APLF-like	pfam_DUF2228_C2H2_APLF-like	-	no_errors	C4orf27	HGNC	ENSG00000056050				88	0	0	55	7	11.2903
AADAT	0	genome.wustl.edu	37	4	171010811	171010811	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	171010811	171010811	T	C	SNP	AADAT	ENST00000509167	human	ensembl	74_37	-1	known	missense	c.31	p.S11G	0.899	superfamily_PyrdxlP-dep_Trfase	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase	-	no_errors	AADAT	HGNC	ENSG00000109576				198	0	0	162	16	8.98876
DCAF16	0	genome.wustl.edu	37	4	17805232	17805232	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	17805232	17805232	C	T	SNP	DCAF16	ENST00000382247	human	ensembl	74_37	-1	known	missense	c.533	p.C178Y	1.000	NULL	NULL	-	no_errors	DCAF16	HGNC	ENSG00000163257				107	0	0	84	12	12.5
DCAF16	0	genome.wustl.edu	37	4	17805389	17805389	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	17805389	17805389	T	C	SNP	DCAF16	ENST00000382247	human	ensembl	74_37	-1	known	missense	c.376	p.K126E	0.951	NULL	NULL	-	no_errors	DCAF16	HGNC	ENSG00000163257				218	0	0	178	19	9.64467
TENM3	0	genome.wustl.edu	37	4	183575044	183575044	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	183575044	183575044	A	G	SNP	TENM3	ENST00000406950	human	ensembl	74_37	+1	known	missense	c.1109	p.N370S	0.940	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,superfamily_Cyt_c-like_dom,smart_EG-like_dom,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	TENM3	HGNC	ENSG00000218336				100	0	0	82	8	8.88889
TRAPPC11	0	genome.wustl.edu	37	4	184585014	184585014	+	RNA	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	184585014	184585014	C	T	SNP	TRAPPC11	ENST00000504526	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	TRAPPC11	HGNC	ENSG00000168538				108	0	0	67	19	22.093
IRF2	0	genome.wustl.edu	37	4	185309962	185309962	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	185309962	185309962	C	T	SNP	IRF2	ENST00000393593	human	ensembl	74_37	-1	known	missense	c.1000	p.V334I	1.000	pirsf_Interferon_reg_fac-1/2	pfam_Interferon_reg_fact_DNA-bd_dom,smart_Interferon_reg_fact_DNA-bd_dom,pirsf_Interferon_reg_fac-1/2,prints_Interferon_reg_fact_DNA-bd_dom	-	no_errors	IRF2	HGNC	ENSG00000168310				94	0	0	69	16	18.8235
IRF2	0	genome.wustl.edu	37	4	185329430	185329430	+	Splice_Site	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	185329430	185329430	C	T	SNP	IRF2	ENST00000393593	human	ensembl	74_37	-1	known	splice_site	c.412-1	e5-1	1.000	-	-	-	no_errors	IRF2	HGNC	ENSG00000168310				75	0	0	67	6	8.21918
PRIMPOL	0	genome.wustl.edu	37	4	185593326	185593326	+	Splice_Site	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	185593326	185593326	G	T	SNP	PRIMPOL	ENST00000314970	human	ensembl	74_37	+1	known	splice_site	c.557-1	e5-1	1.000	-	-	-	no_errors	PRIMPOL	HGNC	ENSG00000164306				161	0	0	111	10	8.26446
HELT	0	genome.wustl.edu	37	4	185941859	185941859	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	185941859	185941859	A	G	SNP	HELT	ENST00000338875	human	ensembl	74_37	+1	known	missense	c.917	p.N306S	1.000	NULL	pfam_bHLH_dom,pfam_Orange,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_Orange,pfscan_bHLH_dom	-	no_errors	HELT	HGNC	ENSG00000187821				46	0	0	49	3	5.76923
SLC25A4	0	genome.wustl.edu	37	4	186065961	186065961	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	186065961	186065961	A	G	SNP	SLC25A4	ENST00000281456	human	ensembl	74_37	+1	known	missense	c.155	p.K52R	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Aden_trnslctor,prints_Mit_uncoupling	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier,prints_Aden_trnslctor,prints_Mit_uncoupling	-	no_errors	SLC25A4	HGNC	ENSG00000151729				87	0	0	74	8	9.7561
CCDC110	0	genome.wustl.edu	37	4	186381022	186381022	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	186381022	186381022	T	A	SNP	CCDC110	ENST00000307588	human	ensembl	74_37	-1	known	missense	c.719	p.D240V	0.994	NULL	superfamily_4_helix_cytokine-like_core	-	no_errors	CCDC110	HGNC	ENSG00000168491				115	0	0	105	7	6.25
CCDC110	0	genome.wustl.edu	37	4	186382236	186382236	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	186382236	186382236	A	T	SNP	CCDC110	ENST00000307588	human	ensembl	74_37	-1	known	missense	c.315	p.N105K	0.735	NULL	superfamily_4_helix_cytokine-like_core	-	no_errors	CCDC110	HGNC	ENSG00000168491				205	0	0	125	12	8.75912
SORBS2	0	genome.wustl.edu	37	4	186533060	186533060	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	186533060	186533060	T	C	SNP	SORBS2	ENST00000284776	human	ensembl	74_37	-1	known	silent	c.2958	p.Q986	1.000	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain	pfam_SH3_domain,pfam_SH3_2,pfam_Sorb,superfamily_SH3_domain,smart_Sorb,smart_SH3_domain,pfscan_Sorb,pfscan_SH3_domain,prints_SH3_domain,prints_p67phox	-	no_errors	SORBS2	HGNC	ENSG00000154556				71	0	0	70	5	6.66667
SORBS2	0	genome.wustl.edu	37	4	186544479	186544479	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	186544479	186544479	C	T	SNP	SORBS2	ENST00000284776	human	ensembl	74_37	-1	known	missense	c.2092	p.A698T	1.000	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_Sorb,superfamily_SH3_domain,smart_Sorb,smart_SH3_domain,pfscan_Sorb,pfscan_SH3_domain,prints_SH3_domain,prints_p67phox	-	no_errors	SORBS2	HGNC	ENSG00000154556				248	0	0	191	14	6.82927
KLKB1	0	genome.wustl.edu	37	4	187177156	187177156	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	187177156	187177156	A	C	SNP	KLKB1	ENST00000264690	human	ensembl	74_37	+1	known	missense	c.1500	p.K500N	0.818	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,pfam_PAN-1_domain,superfamily_Trypsin-like_Pept_dom,smart_Apple,smart_Peptidase_S1,pfscan_Pan_app,pfscan_Peptidase_S1,prints_Apple,prints_Peptidase_S1A	-	no_errors	KLKB1	HGNC	ENSG00000164344				59	0	0	39	7	15.2174
FAT1	0	genome.wustl.edu	37	4	187521118	187521118	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	187521118	187521118	C	T	SNP	FAT1	ENST00000441802	human	ensembl	74_37	-1	known	missense	c.12037	p.A4013T	0.964	pfscan_EG-like_dom	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT1	HGNC	ENSG00000083857				85	0	0	64	15	18.9873
FAT1	0	genome.wustl.edu	37	4	187524831	187524831	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	187524831	187524831	T	C	SNP	FAT1	ENST00000441802	human	ensembl	74_37	-1	known	missense	c.10849	p.T3617A	0.892	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT1	HGNC	ENSG00000083857				69	0	0	51	6	10.5263
FAT1	0	genome.wustl.edu	37	4	187540078	187540078	+	Silent	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	187540078	187540078	A	C	SNP	FAT1	ENST00000441802	human	ensembl	74_37	-1	known	silent	c.7662	p.L2554	0.998	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT1	HGNC	ENSG00000083857				68	0	0	57	4	6.55738
FAT1	0	genome.wustl.edu	37	4	187541346	187541346	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	187541346	187541346	A	C	SNP	FAT1	ENST00000441802	human	ensembl	74_37	-1	known	missense	c.6394	p.L2132V	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT1	HGNC	ENSG00000083857				133	0	0	127	7	5.22388
FAT1	0	genome.wustl.edu	37	4	187549799	187549799	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	187549799	187549799	A	G	SNP	FAT1	ENST00000441802	human	ensembl	74_37	-1	known	missense	c.4442	p.V1481A	0.009	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT1	HGNC	ENSG00000083857				90	0	0	70	5	6.66667
FAT1	0	genome.wustl.edu	37	4	187549801	187549801	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	187549801	187549801	A	G	SNP	FAT1	ENST00000441802	human	ensembl	74_37	-1	known	silent	c.4440	p.A1480	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT1	HGNC	ENSG00000083857				91	0	0	69	5	6.75676
FAT1	0	genome.wustl.edu	37	4	187627796	187627796	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	187627796	187627796	G	A	SNP	FAT1	ENST00000441802	human	ensembl	74_37	-1	known	silent	c.3186	p.D1062	0.925	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT1	HGNC	ENSG00000083857				202	0	0	180	42	18.9189
ZFP42	0	genome.wustl.edu	37	4	188923990	188923990	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	188923990	188923990	A	G	SNP	ZFP42	ENST00000326866	human	ensembl	74_37	+1	known	missense	c.29	p.K10R	0.003	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFP42	HGNC	ENSG00000179059				63	0	0	46	6	11.5385
WHSC1	0	genome.wustl.edu	37	4	1902809	1902809	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	1902809	1902809	T	G	SNP	WHSC1	ENST00000382891	human	ensembl	74_37	+1	known	missense	c.428	p.I143S	0.999	NULL	pfam_PWWP_dom,pfam_SET_dom,pfam_Znf_PHD-finger,pfam_HMG_box_dom,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_PWWP_dom,smart_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_AWS,smart_SET_dom,smart_Post-SET_dom,pfscan_AWS,pfscan_PWWP_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING,pfscan_HMG_box_dom	-	no_errors	WHSC1	HGNC	ENSG00000109685				51	0	0	47	3	6
SLIT2	0	genome.wustl.edu	37	4	20521008	20521008	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	20521008	20521008	C	T	SNP	SLIT2	ENST00000504154	human	ensembl	74_37	+1	known	silent	c.1062	p.V354	1.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_EG-like_dom,pfam_Laminin_G,pfam_Leu-rich_rpt,pfam_LRR-contain_N,pfam_Cys-rich_flank_reg_C,superfamily_ConA-like_lec_gl_sf,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Fol_N,smart_Laminin_G,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	SLIT2	HGNC	ENSG00000145147				72	0	0	37	11	22.9167
SLIT2	0	genome.wustl.edu	37	4	20525792	20525792	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	20525792	20525792	G	A	SNP	SLIT2	ENST00000504154	human	ensembl	74_37	+1	known	missense	c.1430	p.R477H	1.000	pfam_Cys-rich_flank_reg_C,smart_Cys-rich_flank_reg_C	pfam_EG-like_dom,pfam_Laminin_G,pfam_Leu-rich_rpt,pfam_LRR-contain_N,pfam_Cys-rich_flank_reg_C,superfamily_ConA-like_lec_gl_sf,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Fol_N,smart_Laminin_G,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	SLIT2	HGNC	ENSG00000145147				103	0	0	92	11	10.6796
PACRGL	0	genome.wustl.edu	37	4	20711339	20711339	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	20711339	20711339	G	A	SNP	PACRGL	ENST00000506951	human	ensembl	74_37	+1	known	missense	c.241	p.V81M	1.000	NULL	NULL	-	no_errors	PACRGL	HGNC	ENSG00000163138				153	0	0	92	5	5.15464
KCNIP4	0	genome.wustl.edu	37	4	20734355	20734355	+	Nonsense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	20734355	20734355	A	T	SNP	KCNIP4	ENST00000382150	human	ensembl	74_37	-1	known	nonsense	c.528	p.Y176*	0.991	pfam_SPARC/Testican_Ca-bd-dom	pfam_EF_hand_dom,pfam_SPARC/Testican_Ca-bd-dom,smart_EF_hand_dom,pfscan_EF_hand_dom,prints_Recoverin	-	no_errors	KCNIP4	HGNC	ENSG00000185774				88	0	0	57	4	6.55738
GPR125	0	genome.wustl.edu	37	4	22463404	22463404	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	22463404	22463404	A	G	SNP	GPR125	ENST00000334304	human	ensembl	74_37	-1	known	silent	c.357	p.S119	1.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_GPCR_2_extracellular_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,pfscan_Ig-like_dom	-	no_errors	GPR125	HGNC	ENSG00000152990				147	0	0	85	10	10.5263
MIR573	0	genome.wustl.edu	37	4	24521905	24521905	+	RNA	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	24521905	24521905	A	G	SNP	MIR573	ENST00000384964	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.011	-	-	-	no_errors	MIR573	HGNC	ENSG00000207697				216	0	0	139	11	7.33333
DHX15	0	genome.wustl.edu	37	4	24550530	24550530	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	24550530	24550530	C	T	SNP	DHX15	ENST00000336812	human	ensembl	74_37	-1	known	missense	c.1196	p.R399H	0.999	pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_C,pfscan_Helicase_C	pfam_DUF1605,pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX15	HGNC	ENSG00000109606				76	0	0	47	6	11.3208
DHX15	0	genome.wustl.edu	37	4	24556472	24556472	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	24556472	24556472	A	G	SNP	DHX15	ENST00000336812	human	ensembl	74_37	-1	known	missense	c.956	p.V319A	1.000	superfamily_P-loop_NTPase,smart_Helicase_ATP-bd	pfam_DUF1605,pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX15	HGNC	ENSG00000109606				123	0	0	108	14	11.4754
SEPSECS	0	genome.wustl.edu	37	4	25146678	25146678	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	25146678	25146678	T	C	SNP	SEPSECS	ENST00000382103	human	ensembl	74_37	-1	known	missense	c.882	p.I294M	1.000	pfam_SLA/LP_auto_ag,superfamily_PyrdxlP-dep_Trfase,tigrfam_Sec-tRNA_Se_transferase	pfam_SLA/LP_auto_ag,superfamily_PyrdxlP-dep_Trfase,tigrfam_Sec-tRNA_Se_transferase	-	no_errors	SEPSECS	HGNC	ENSG00000109618				93	0	0	64	12	15.7895
STIM2	0	genome.wustl.edu	37	4	27010471	27010471	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	27010471	27010471	G	A	SNP	STIM2	ENST00000382009	human	ensembl	74_37	+1	known	missense	c.1621	p.A541T	1.000	NULL	pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed,pfscan_SAM	-	no_errors	STIM2	HGNC	ENSG00000109689				81	0	0	67	10	12.987
SH3BP2	0	genome.wustl.edu	37	4	2834759	2834759	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	2834759	2834759	T	C	SNP	SH3BP2	ENST00000503393	human	ensembl	74_37	+1	known	missense	c.1702	p.Y568H	1.000	pfam_SH2,smart_SH2,pfscan_SH2	pfam_Pleckstrin_homology,pfam_SH2,smart_Pleckstrin_homology,smart_SH2,pfscan_Pleckstrin_homology,pfscan_SH2	-	no_errors	SH3BP2	HGNC	ENSG00000087266				92	0	0	107	13	10.8333
ADD1	0	genome.wustl.edu	37	4	2886334	2886334	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	2886334	2886334	G	A	SNP	ADD1	ENST00000264758	human	ensembl	74_37	+1	known	missense	c.451	p.A151T	1.000	pfam_Aldolase_II/adducin_N,superfamily_Aldolase_II/adducin_N	pfam_Aldolase_II/adducin_N,superfamily_Aldolase_II/adducin_N	-	no_errors	ADD1	HGNC	ENSG00000087274				199	0	0	148	18	10.8434
GRK4	0	genome.wustl.edu	37	4	3037113	3037113	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	3037113	3037113	T	C	SNP	GRK4	ENST00000398052	human	ensembl	74_37	+1	known	silent	c.1270	p.L424	0.999	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_RGS_dom,superfamily_Kinase-like_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Regulat_G_prot_signal_superfam,pfscan_Prot_kinase_dom,prints_GPCR_kinase	-	no_errors	GRK4	HGNC	ENSG00000125388				91	0	0	96	13	11.9266
PCDH7	0	genome.wustl.edu	37	4	30725086	30725086	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	30725086	30725086	A	G	SNP	PCDH7	ENST00000543491	human	ensembl	74_37	+1	known	missense	c.2042	p.N681S	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH7	HGNC	ENSG00000169851				122	0	0	123	15	10.8696
HTT	0	genome.wustl.edu	37	4	3148604	3148604	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	3148604	3148604	C	T	SNP	HTT	ENST00000355072	human	ensembl	74_37	+1	known	missense	c.3224	p.S1075L	0.997	superfamily_ARM-type_fold	pfam_Huntingtin_middle-repeat,pfam_HEAT,superfamily_ARM-type_fold,prints_Huntingtin	-	no_errors	HTT	HGNC	ENSG00000197386				564	0	0	489	50	9.27644
RGS12	0	genome.wustl.edu	37	4	3318001	3318001	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	3318001	3318001	C	T	SNP	RGS12	ENST00000344733	human	ensembl	74_37	+1	known	missense	c.104	p.T35M	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_Raf-like_ras-bd,pfam_RGS_dom,pfam_PDZ,pfam_GoLoco_motif,superfamily_Regulat_G_prot_signal_superfam,superfamily_PDZ,smart_PDZ,smart_PTB/PI_dom,smart_Regulat_G_prot_signal_superfam,smart_Raf-like_ras-bd,smart_GoLoco_motif,pfscan_GoLoco_motif,pfscan_PDZ,pfscan_PTB/PI_dom,pfscan_Raf-like_ras-bd,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS12	HGNC	ENSG00000159788				86	0	0	75	9	10.7143
RGS12	0	genome.wustl.edu	37	4	3318443	3318443	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	3318443	3318443	A	G	SNP	RGS12	ENST00000344733	human	ensembl	74_37	+1	known	silent	c.546	p.G182	0.000	NULL	pfam_Raf-like_ras-bd,pfam_RGS_dom,pfam_PDZ,pfam_GoLoco_motif,superfamily_Regulat_G_prot_signal_superfam,superfamily_PDZ,smart_PDZ,smart_PTB/PI_dom,smart_Regulat_G_prot_signal_superfam,smart_Raf-like_ras-bd,smart_GoLoco_motif,pfscan_GoLoco_motif,pfscan_PDZ,pfscan_PTB/PI_dom,pfscan_Raf-like_ras-bd,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS12	HGNC	ENSG00000159788				84	0	0	66	5	7.04225
LRPAP1	0	genome.wustl.edu	37	4	3526647	3526647	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	3526647	3526647	T	C	SNP	LRPAP1	ENST00000500728	human	ensembl	74_37	-1	known	missense	c.336	p.I112M	0.000	pfam_MG_RAP_rcpt_1,superfamily_MG_RAP_rcpt_1	pfam_Alpha_2_MRAP_C,pfam_MG_RAP_rcpt_1,superfamily_MG_RAP_rcpt_1	-	no_errors	LRPAP1	HGNC	ENSG00000163956				434	0	0	359	22	5.77428
ARAP2	0	genome.wustl.edu	37	4	36109300	36109300	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	36109300	36109300	T	C	SNP	ARAP2	ENST00000303965	human	ensembl	74_37	-1	known	missense	c.4172	p.Y1391C	1.000	pfam_Ras-assoc,pfscan_Ras-assoc	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_ArfGAP,pfam_SAM_type1,pfam_SAM_2,pfam_Ras-assoc,superfamily_Rho_GTPase_activation_prot,superfamily_SAM/pointed,smart_SAM,smart_Pleckstrin_homology,smart_ArfGAP,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SAM,pfscan_ArfGAP,pfscan_RhoGAP_dom,prints_ArfGAP	-	no_errors	ARAP2	HGNC	ENSG00000047365				134	0	0	115	8	6.50407
ARAP2	0	genome.wustl.edu	37	4	36149198	36149198	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	36149198	36149198	T	A	SNP	ARAP2	ENST00000303965	human	ensembl	74_37	-1	known	missense	c.3171	p.R1057S	0.770	smart_Pleckstrin_homology	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_ArfGAP,pfam_SAM_type1,pfam_SAM_2,pfam_Ras-assoc,superfamily_Rho_GTPase_activation_prot,superfamily_SAM/pointed,smart_SAM,smart_Pleckstrin_homology,smart_ArfGAP,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SAM,pfscan_ArfGAP,pfscan_RhoGAP_dom,prints_ArfGAP	-	no_errors	ARAP2	HGNC	ENSG00000047365				80	0	0	47	4	7.84314
ARAP2	0	genome.wustl.edu	37	4	36161111	36161111	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	36161111	36161111	A	G	SNP	ARAP2	ENST00000303965	human	ensembl	74_37	-1	known	missense	c.2459	p.V820A	1.000	NULL	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_ArfGAP,pfam_SAM_type1,pfam_SAM_2,pfam_Ras-assoc,superfamily_Rho_GTPase_activation_prot,superfamily_SAM/pointed,smart_SAM,smart_Pleckstrin_homology,smart_ArfGAP,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SAM,pfscan_ArfGAP,pfscan_RhoGAP_dom,prints_ArfGAP	-	no_errors	ARAP2	HGNC	ENSG00000047365				104	0	0	83	7	7.77778
ADRA2C	0	genome.wustl.edu	37	4	3769612	3769612	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	3769612	3769612	T	C	SNP	ADRA2C	ENST00000330055	human	ensembl	74_37	+1	known	missense	c.1279	p.Y427H	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_ADRA2C_rcpt,prints_GPCR_Rhodpsn,prints_ADR_fam	-	no_errors	ADRA2C	HGNC	ENSG00000184160				45	0	0	38	4	9.52381
TBC1D1	0	genome.wustl.edu	37	4	38138948	38138948	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	38138948	38138948	G	T	SNP	TBC1D1	ENST00000261439	human	ensembl	74_37	+1	known	missense	c.3499	p.G1167C	0.163	NULL	pfam_Rab-GTPase-TBC_dom,pfam_DUF3350,pfam_PTB/PI_dom,superfamily_Rab-GTPase-TBC_dom,smart_PTB/PI_dom,smart_Rab-GTPase-TBC_dom,pfscan_PTB/PI_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D1	HGNC	ENSG00000065882				25	0	0	22	4	15.3846
TLR10	0	genome.wustl.edu	37	4	38776589	38776589	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	38776589	38776589	C	T	SNP	TLR10	ENST00000308973	human	ensembl	74_37	-1	known	missense	c.623	p.R208H	0.000	pirsf_Toll-like_receptor	pirsf_Toll-like_receptor,pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR10	HGNC	ENSG00000174123				129	0	0	61	10	14.0845
TLR1	0	genome.wustl.edu	37	4	38798650	38798650	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	38798650	38798650	G	A	SNP	TLR1	ENST00000308979	human	ensembl	74_37	-1	known	silent	c.1803	p.C601	0.102	pirsf_Toll-like_receptor	pirsf_Toll-like_receptor,pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR1	HGNC	ENSG00000174125				93	0	0	85	9	9.57447
TLR1	0	genome.wustl.edu	37	4	38798749	38798749	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	38798749	38798749	C	A	SNP	TLR1	ENST00000308979	human	ensembl	74_37	-1	known	missense	c.1704	p.K568N	0.998	pirsf_Toll-like_receptor,smart_Cys-rich_flank_reg_C	pirsf_Toll-like_receptor,pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR1	HGNC	ENSG00000174125				128	0	0	143	9	5.92105
KLHL5	0	genome.wustl.edu	37	4	39064525	39064525	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	39064525	39064525	G	A	SNP	KLHL5	ENST00000359687	human	ensembl	74_37	+1	known	missense	c.391	p.A131T	1.000	NULL	pfam_Kelch_1,pfam_Kelch_2,pfam_BACK,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pfscan_BTB/POZ-like	-	no_errors	KLHL5	HGNC	ENSG00000109790				142	1	0.699301	87	37	29.8387
KLHL5	0	genome.wustl.edu	37	4	39083781	39083781	+	Splice_Site	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	39083781	39083781	T	C	SNP	KLHL5	ENST00000359687	human	ensembl	74_37	+1	known	splice_site	c.1038+2	e4+2	1.000	-	-	-	no_errors	KLHL5	HGNC	ENSG00000109790				161	0	0	136	14	9.33333
RFC1	0	genome.wustl.edu	37	4	39297264	39297264	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	39297264	39297264	A	G	SNP	RFC1	ENST00000381897	human	ensembl	74_37	-1	known	missense	c.2927	p.V976A	0.999	pfam_DNA_replication_fac_RFC1_C,superfamily_DNA_pol3_clamp-load_cplx_C,pirsf_DNA_replication_fac_C_lsu	pfam_DNA_replication_fac_RFC1_C,pfam_BRCT_dom,pfam_ATPase_AAA_core,superfamily_DNA_pol3_clamp-load_cplx_C,superfamily_P-loop_NTPase,superfamily_BRCT_dom,smart_BRCT_dom,smart_AAA+_ATPase,pirsf_DNA_replication_fac_C_lsu,pfscan_BRCT_dom	-	no_errors	RFC1	HGNC	ENSG00000035928				90	0	0	68	9	11.6883
PDS5A	0	genome.wustl.edu	37	4	39843614	39843614	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	39843614	39843614	A	C	SNP	PDS5A	ENST00000303538	human	ensembl	74_37	-1	known	missense	c.3611	p.I1204S	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	PDS5A	HGNC	ENSG00000121892				99	0	0	64	8	11.1111
PDS5A	0	genome.wustl.edu	37	4	39863914	39863914	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	39863914	39863914	T	C	SNP	PDS5A	ENST00000303538	human	ensembl	74_37	-1	known	missense	c.3011	p.Y1004C	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	PDS5A	HGNC	ENSG00000121892				15	0	0	6	2	25
N4BP2	0	genome.wustl.edu	37	4	40123127	40123127	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	40123127	40123127	A	T	SNP	N4BP2	ENST00000261435	human	ensembl	74_37	+1	known	missense	c.3396	p.L1132F	0.947	NULL	pfam_DUF1771,pfam_Smr/MutS2_C,superfamily_P-loop_NTPase,superfamily_UBA-like,smart_Smr/MutS2_C,pfscan_CUE,pfscan_Smr/MutS2_C	-	no_errors	N4BP2	HGNC	ENSG00000078177				114	0	0	72	6	7.69231
TMEM33	0	genome.wustl.edu	37	4	41951356	41951356	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	41951356	41951356	A	G	SNP	TMEM33	ENST00000325094	human	ensembl	74_37	+1	known	missense	c.568	p.R190G	1.000	pfam_UPF0121	pfam_UPF0121	-	no_errors	TMEM33	HGNC	ENSG00000109133				132	0	0	91	6	6.18557
TMEM33	0	genome.wustl.edu	37	4	41951372	41951372	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	41951372	41951372	G	A	SNP	TMEM33	ENST00000325094	human	ensembl	74_37	+1	known	missense	c.584	p.R195Q	1.000	pfam_UPF0121	pfam_UPF0121	-	no_errors	TMEM33	HGNC	ENSG00000109133				131	0	0	84	6	6.66667
SLC30A9	0	genome.wustl.edu	37	4	42065102	42065102	+	Silent	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	42065102	42065102	A	T	SNP	SLC30A9	ENST00000264451	human	ensembl	74_37	+1	known	silent	c.996	p.G332	0.999	pfam_Cation_efflux,tigrfam_Cation_efflux	pfam_Cation_efflux,superfamily_DNA-bd_dom_put,tigrfam_Cation_efflux	-	no_errors	SLC30A9	HGNC	ENSG00000014824				141	0	0	107	12	10.084
SLC30A9	0	genome.wustl.edu	37	4	42069122	42069122	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	42069122	42069122	A	G	SNP	SLC30A9	ENST00000264451	human	ensembl	74_37	+1	known	missense	c.1165	p.S389G	1.000	pfam_Cation_efflux,tigrfam_Cation_efflux	pfam_Cation_efflux,superfamily_DNA-bd_dom_put,tigrfam_Cation_efflux	-	no_errors	SLC30A9	HGNC	ENSG00000014824				195	0	0	157	10	5.98802
ABCA11P	0	genome.wustl.edu	37	4	420896	420896	+	RNA	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	420896	420896	A	C	SNP	ABCA11P	ENST00000507854	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.245	-	-	-	no_errors	ABCA11P	HGNC	ENSG00000251595				38	0	0	26	5	16.129
ATP8A1	0	genome.wustl.edu	37	4	42416673	42416673	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	42416673	42416673	C	T	SNP	ATP8A1	ENST00000381668	human	ensembl	74_37	-1	known	missense	c.3368	p.R1123H	1.000	NULL	pfam_ATPase_P-typ_transduc_dom_A,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP8A1	HGNC	ENSG00000124406				195	0	0	150	8	5.06329
ATP8A1	0	genome.wustl.edu	37	4	42588453	42588453	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	42588453	42588453	A	G	SNP	ATP8A1	ENST00000381668	human	ensembl	74_37	-1	known	missense	c.635	p.L212S	1.000	pfam_ATPase_P-typ_transduc_dom_A,tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP8A1	HGNC	ENSG00000124406				89	0	0	60	4	6.25
GRXCR1	0	genome.wustl.edu	37	4	42895339	42895339	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	42895339	42895339	G	A	SNP	GRXCR1	ENST00000399770	human	ensembl	74_37	+1	known	missense	c.56	p.R19Q	1.000	NULL	pfam_Glutaredoxin,superfamily_Thioredoxin-like_fold,superfamily_HSP_DnaJ_Cys-rich_dom	-	no_errors	GRXCR1	HGNC	ENSG00000215203				162	0	0	121	14	10.3704
GRXCR1	0	genome.wustl.edu	37	4	42964999	42964999	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	42964999	42964999	G	A	SNP	GRXCR1	ENST00000399770	human	ensembl	74_37	+1	known	missense	c.475	p.V159I	1.000	pfam_Glutaredoxin,superfamily_Thioredoxin-like_fold	pfam_Glutaredoxin,superfamily_Thioredoxin-like_fold,superfamily_HSP_DnaJ_Cys-rich_dom	-	no_errors	GRXCR1	HGNC	ENSG00000215203				215	0	0	162	21	11.4754
ZNF721	0	genome.wustl.edu	37	4	437167	437167	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	437167	437167	G	A	SNP	ZNF721	ENST00000511833	human	ensembl	74_37	-1	known	silent	c.1089	p.C363	0.017	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF721	HGNC	ENSG00000182903				104	1	0.952381	55	9	14.0625
KCTD8	0	genome.wustl.edu	37	4	44450344	44450344	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	44450344	44450344	G	A	SNP	KCTD8	ENST00000360029	human	ensembl	74_37	-1	known	missense	c.197	p.P66L	1.000	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	-	no_errors	KCTD8	HGNC	ENSG00000183783				25	0	0	22	7	24.1379
GUF1	0	genome.wustl.edu	37	4	44692771	44692771	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	44692771	44692771	C	G	SNP	GUF1	ENST00000281543	human	ensembl	74_37	+1	known	missense	c.1373	p.A458G	1.000	tigrfam_EF-4	pfam_EF_GTP-bd_dom,pfam_LepA_GTP-bd_C,pfam_EFG_V,pfam_Transl_elong_EFTu/EF1A_2,pfam_Small_GTPase,superfamily_P-loop_NTPase,superfamily_EFG_III-V,superfamily_Transl_B-barrel,prints_EF_GTP-bd_dom,tigrfam_EF-4,tigrfam_Small_GTP-bd_dom	-	no_errors	GUF1	HGNC	ENSG00000151806				86	0	0	66	5	7.04225
GABRA2	0	genome.wustl.edu	37	4	46252449	46252449	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	46252449	46252449	A	G	SNP	GABRA2	ENST00000540012	human	ensembl	74_37	-1	known	missense	c.1247	p.F416S	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_GABAAa_rcpt,prints_GABAA_rcpt,prints_GABBAa2_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GABRA2	HGNC	ENSG00000151834				270	0	0	216	14	6.08696
GABRA2	0	genome.wustl.edu	37	4	46305564	46305564	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	46305564	46305564	T	G	SNP	GABRA2	ENST00000540012	human	ensembl	74_37	-1	known	missense	c.604	p.T202P	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_GABAAa_rcpt,prints_GABAA_rcpt,prints_GABBAa2_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GABRA2	HGNC	ENSG00000151834				117	0	0	83	6	6.74157
GABRA2	0	genome.wustl.edu	37	4	46334631	46334631	+	Splice_Site	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	46334631	46334631	C	T	SNP	GABRA2	ENST00000356504	human	ensembl	74_37	-1	known	splice_site	c.255+1	e3+1	1.000	-	-	-	no_errors	GABRA2	HGNC	ENSG00000151834				136	0	0	74	14	15.9091
GABRA4	0	genome.wustl.edu	37	4	46930536	46930536	+	Silent	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	46930536	46930536	A	C	SNP	GABRA4	ENST00000264318	human	ensembl	74_37	-1	known	silent	c.1371	p.T457	0.082	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_GABBAa4_rcpt,prints_GABAA_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRA4	HGNC	ENSG00000109158				116	0	0	82	5	5.74713
GABRA4	0	genome.wustl.edu	37	4	46995427	46995427	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	46995427	46995427	C	A	SNP	GABRA4	ENST00000264318	human	ensembl	74_37	-1	known	missense	c.15	p.K5N	1.000	NULL	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_GABBAa4_rcpt,prints_GABAA_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRA4	HGNC	ENSG00000109158				79	0	0	72	6	7.69231
ATP10D	0	genome.wustl.edu	37	4	47571042	47571042	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	47571042	47571042	G	T	SNP	ATP10D	ENST00000273859	human	ensembl	74_37	+1	known	missense	c.3042	p.K1014N	0.000	pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP10D	HGNC	ENSG00000145246				68	0	0	69	8	10.3896
CORIN	0	genome.wustl.edu	37	4	47663845	47663845	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	47663845	47663845	A	G	SNP	CORIN	ENST00000273857	human	ensembl	74_37	-1	known	missense	c.1618	p.C540R	1.000	pirsf_Peptidase_S1A_corin,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom	pirsf_Peptidase_S1A_corin,pfam_Peptidase_S1,pfam_LDrepeatLR_classA_rpt,pfam_Frizzled_dom,superfamily_Trypsin-like_Pept_dom,superfamily_Frizzled_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_Srcr_rcpt-rel,smart_Frizzled_dom,smart_LDrepeatLR_classA_rpt,smart_Srcr_rcpt-rel,smart_Peptidase_S1,prints_LDrepeatLR_classA_rpt,prints_Peptidase_S1A,pfscan_Frizzled_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_Peptidase_S1	-	no_errors	CORIN	HGNC	ENSG00000145244				73	0	0	53	9	14.5161
CORIN	0	genome.wustl.edu	37	4	47695094	47695094	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	47695094	47695094	C	T	SNP	CORIN	ENST00000273857	human	ensembl	74_37	-1	known	missense	c.806	p.C269Y	1.000	pirsf_Peptidase_S1A_corin,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pirsf_Peptidase_S1A_corin,pfam_Peptidase_S1,pfam_LDrepeatLR_classA_rpt,pfam_Frizzled_dom,superfamily_Trypsin-like_Pept_dom,superfamily_Frizzled_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_Srcr_rcpt-rel,smart_Frizzled_dom,smart_LDrepeatLR_classA_rpt,smart_Srcr_rcpt-rel,smart_Peptidase_S1,prints_LDrepeatLR_classA_rpt,prints_Peptidase_S1A,pfscan_Frizzled_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_Peptidase_S1	-	no_errors	CORIN	HGNC	ENSG00000145244				78	0	0	52	18	25.7143
CNGA1	0	genome.wustl.edu	37	4	47939244	47939244	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	47939244	47939244	A	G	SNP	CNGA1	ENST00000402813	human	ensembl	74_37	-1	known	missense	c.1474	p.F492L	1.000	superfamily_cNMP-bd-like	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGA1	HGNC	ENSG00000198515				170	0	0	113	8	6.61157
CNGA1	0	genome.wustl.edu	37	4	47939482	47939482	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	47939482	47939482	G	A	SNP	CNGA1	ENST00000402813	human	ensembl	74_37	-1	known	silent	c.1236	p.G412	0.969	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGA1	HGNC	ENSG00000198515				142	0	0	113	6	5.04202
TEC	0	genome.wustl.edu	37	4	48147163	48147163	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	48147163	48147163	C	T	SNP	TEC	ENST00000381501	human	ensembl	74_37	-1	known	missense	c.1403	p.S468N	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_Pleckstrin_homology,pfam_SH3_domain,pfam_Znf_Btk_motif,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_Znf_Btk_motif,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_Znf_Btk_motif,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH3_domain,prints_SH2,prints_Znf_Btk_motif	-	no_errors	TEC	HGNC	ENSG00000135605				180	0	0	148	21	12.426
FRYL	0	genome.wustl.edu	37	4	48542963	48542963	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	48542963	48542963	T	C	SNP	FRYL	ENST00000358350	human	ensembl	74_37	-1	known	missense	c.5702	p.D1901G	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	FRYL	HGNC	ENSG00000075539				126	0	0	83	10	10.7527
FRYL	0	genome.wustl.edu	37	4	48566115	48566115	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	48566115	48566115	T	C	SNP	FRYL	ENST00000358350	human	ensembl	74_37	-1	known	missense	c.3446	p.H1149R	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	FRYL	HGNC	ENSG00000075539				87	0	0	61	4	6.15385
FRYL	0	genome.wustl.edu	37	4	48584736	48584736	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	48584736	48584736	C	T	SNP	FRYL	ENST00000358350	human	ensembl	74_37	-1	known	missense	c.1764	p.M588I	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	FRYL	HGNC	ENSG00000075539				107	0	0	81	5	5.81395
FRYL	0	genome.wustl.edu	37	4	48588650	48588650	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	48588650	48588650	T	A	SNP	FRYL	ENST00000358350	human	ensembl	74_37	-1	known	missense	c.1736	p.E579V	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	FRYL	HGNC	ENSG00000075539				97	0	0	51	4	7.27273
OCIAD1	0	genome.wustl.edu	37	4	48859353	48859353	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	48859353	48859353	C	A	SNP	OCIAD1	ENST00000264312	human	ensembl	74_37	+1	known	missense	c.671	p.P224H	1.000	NULL	pfam_OCIA	-	no_errors	OCIAD1	HGNC	ENSG00000109180				89	0	0	49	7	12.5
LRRC66	0	genome.wustl.edu	37	4	52861789	52861789	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	52861789	52861789	C	A	SNP	LRRC66	ENST00000343457	human	ensembl	74_37	-1	known	missense	c.1399	p.A467S	0.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC66	HGNC	ENSG00000188993				88	0	0	91	13	12.5
SPATA18	0	genome.wustl.edu	37	4	52945916	52945916	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	52945916	52945916	A	C	SNP	SPATA18	ENST00000295213	human	ensembl	74_37	+1	known	missense	c.1186	p.I396L	1.000	NULL	NULL	-	no_errors	SPATA18	HGNC	ENSG00000163071				229	1	0.434783	159	14	8.09249
SCFD2	0	genome.wustl.edu	37	4	54231548	54231548	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	54231548	54231548	A	G	SNP	SCFD2	ENST00000401642	human	ensembl	74_37	-1	known	silent	c.561	p.L187	0.007	NULL	pfam_Sec1-like,superfamily_Sec1-like	-	no_errors	SCFD2	HGNC	ENSG00000184178				31	0	0	42	4	8.69565
LNX1	0	genome.wustl.edu	37	4	54440034	54440034	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	54440034	54440034	G	A	SNP	LNX1	ENST00000263925	human	ensembl	74_37	-1	known	nonsense	c.136	p.Q46*	1.000	smart_Znf_RING,pfscan_Znf_RING	pfam_PDZ,superfamily_PDZ,smart_Znf_RING,smart_PDZ,pfscan_PDZ,pfscan_Znf_RING	-	no_errors	LNX1	HGNC	ENSG00000072201				25	0	0	24	5	17.2414
KIT	0	genome.wustl.edu	37	4	55565802	55565802	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	55565802	55565802	A	T	SNP	KIT	ENST00000288135	human	ensembl	74_37	+1	known	missense	c.626	p.K209I	0.514	pirsf_Tyr_kinase_CSF1/PDGF_rcpt	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	KIT	HGNC	ENSG00000157404				77	0	0	46	4	8
KIT	0	genome.wustl.edu	37	4	55592157	55592157	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	55592157	55592157	A	G	SNP	KIT	ENST00000288135	human	ensembl	74_37	+1	known	missense	c.1481	p.Y494C	0.325	pirsf_Tyr_kinase_CSF1/PDGF_rcpt	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	KIT	HGNC	ENSG00000157404				87	0	0	64	4	5.88235
KDR	0	genome.wustl.edu	37	4	55964961	55964961	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	55964961	55964961	T	A	SNP	KDR	ENST00000263923	human	ensembl	74_37	-1	known	missense	c.2276	p.E759V	0.996	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Prot_kinase_dom,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_VEGFR2_rcpt	-	no_errors	KDR	HGNC	ENSG00000128052				84	0	0	73	6	7.59494
KDR	0	genome.wustl.edu	37	4	55972863	55972863	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	55972863	55972863	T	C	SNP	KDR	ENST00000263923	human	ensembl	74_37	-1	known	silent	c.1527	p.G509	0.860	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Prot_kinase_dom,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_VEGFR2_rcpt	-	no_errors	KDR	HGNC	ENSG00000128052				77	0	0	33	5	13.1579
EVC2	0	genome.wustl.edu	37	4	5624510	5624510	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	5624510	5624510	C	T	SNP	EVC2	ENST00000344408	human	ensembl	74_37	-1	known	missense	c.2255	p.R752Q	0.999	NULL	pfam_Limbin	-	no_errors	EVC2	HGNC	ENSG00000173040				42	0	0	52	14	21.2121
EXOC1	0	genome.wustl.edu	37	4	56730485	56730485	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	56730485	56730485	G	A	SNP	EXOC1	ENST00000346134	human	ensembl	74_37	+1	known	nonsense	c.348	p.W116*	1.000	NULL	pfam_Exocyst_Exoc1/SEC3	-	no_errors	EXOC1	HGNC	ENSG00000090989				75	0	0	43	10	18.8679
PPAT	0	genome.wustl.edu	37	4	57269249	57269249	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	57269249	57269249	T	C	SNP	PPAT	ENST00000264220	human	ensembl	74_37	-1	known	silent	c.618	p.L206	0.597	pfam_GATase_dom,pirsf_Amd_phspho_trans,tigrfam_Amd_phspho_trans	pfam_GATase_dom,pfam_PRibTrfase_dom,pirsf_Amd_phspho_trans,tigrfam_Amd_phspho_trans	-	no_errors	PPAT	HGNC	ENSG00000128059				81	0	0	54	9	14.2857
ARL9	0	genome.wustl.edu	37	4	57384867	57384867	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	57384867	57384867	T	A	SNP	ARL9	ENST00000360096	human	ensembl	74_37	+1	known	missense	c.40	p.S14T	0.992	pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase	pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase	-	no_errors	ARL9	HGNC	ENSG00000196503				133	0	0	126	12	8.69565
ARL9	0	genome.wustl.edu	37	4	57389893	57389893	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	57389893	57389893	A	T	SNP	ARL9	ENST00000360096	human	ensembl	74_37	+1	known	missense	c.223	p.I75F	1.000	pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase	pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase	-	no_errors	ARL9	HGNC	ENSG00000196503				68	0	0	40	5	11.1111
EVC	0	genome.wustl.edu	37	4	5754593	5754593	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	5754593	5754593	C	T	SNP	EVC	ENST00000264956	human	ensembl	74_37	+1	known	missense	c.1129	p.H377Y	0.539	NULL	NULL	-	no_errors	EVC	HGNC	ENSG00000072840				78	0	0	67	18	21.1765
POLR2B	0	genome.wustl.edu	37	4	57897134	57897134	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	57897134	57897134	C	T	SNP	POLR2B	ENST00000314595	human	ensembl	74_37	+1	known	missense	c.3505	p.P1169S	1.000	pfam_RNA_pol_Rpb2_7	pfam_DNA-dir_RNA_pol_su2_6,pfam_RNA_pol_bsu_protrusion,pfam_RNA_pol_Rpb2_2,pfam_RNA_pol_Rpb2_7,pfam_RNA_pol_Rpb2_4,pfam_RNA_pol_Rpb2_3,pfam_RNA_pol_Rpb2_5	-	no_errors	POLR2B	HGNC	ENSG00000047315				124	0	0	63	13	17.1053
JAKMIP1	0	genome.wustl.edu	37	4	6064122	6064122	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	6064122	6064122	G	A	SNP	JAKMIP1	ENST00000409021	human	ensembl	74_37	-1	known	missense	c.1477	p.R493W	0.995	NULL	NULL	-	no_errors	JAKMIP1	HGNC	ENSG00000152969				79	0	0	74	5	6.32911
JAKMIP1	0	genome.wustl.edu	37	4	6083425	6083425	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	6083425	6083425	G	A	SNP	JAKMIP1	ENST00000409021	human	ensembl	74_37	-1	known	missense	c.1012	p.R338W	0.947	NULL	NULL	-	no_errors	JAKMIP1	HGNC	ENSG00000152969				107	0	0	66	16	19.5122
WFS1	0	genome.wustl.edu	37	4	6303480	6303480	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	6303480	6303480	G	A	SNP	WFS1	ENST00000226760	human	ensembl	74_37	+1	known	missense	c.1958	p.R653H	1.000	NULL	NULL	-	no_errors	WFS1	HGNC	ENSG00000109501				192	0	0	193	16	7.6555
WFS1	0	genome.wustl.edu	37	4	6303751	6303751	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	6303751	6303751	C	T	SNP	WFS1	ENST00000226760	human	ensembl	74_37	+1	known	silent	c.2229	p.S743	0.602	NULL	NULL	-	no_errors	WFS1	HGNC	ENSG00000109501				24	0	0	17	5	22.7273
PPP2R2C	0	genome.wustl.edu	37	4	6380273	6380273	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	6380273	6380273	G	A	SNP	PPP2R2C	ENST00000335585	human	ensembl	74_37	-1	known	silent	c.195	p.G65	0.972	superfamily_WD40_repeat_dom,pirsf_PP2A_PR55	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_PP2A_PR55,prints_PP2A_PR55	-	no_errors	PPP2R2C	HGNC	ENSG00000074211				128	1	0.775194	96	20	17.2414
EPHA5	0	genome.wustl.edu	37	4	66535289	66535289	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	66535289	66535289	T	G	SNP	EPHA5	ENST00000273854	human	ensembl	74_37	-1	known	missense	c.172	p.S58R	1.000	pirsf_Tyr_kinase_ephrin_rcpt	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,pirsf_Tyr_kinase_ephrin_rcpt,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	EPHA5	HGNC	ENSG00000145242				22	0	0	15	7	31.8182
KIAA0232	0	genome.wustl.edu	37	4	6826332	6826332	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	6826332	6826332	G	A	SNP	KIAA0232	ENST00000307659	human	ensembl	74_37	+1	known	missense	c.152	p.G51D	1.000	NULL	NULL	-	no_errors	KIAA0232	HGNC	ENSG00000170871				134	0	0	104	12	10.3448
UBA6	0	genome.wustl.edu	37	4	68489854	68489854	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	68489854	68489854	T	C	SNP	UBA6	ENST00000322244	human	ensembl	74_37	-1	known	missense	c.2830	p.T944A	1.000	pfam_Ub-activating_enz_e1_C,tigrfam_UBQ-activ_enz_E1	pfam_ThiF_NAD_FAD-bd,pfam_Ub-activating_enz_e1_C,pfam_UBact_repeat,pfam_Ubiquitin-activating_enzyme,superfamily_Molybdenum_cofac_synth_MoeB,prints_UBQ/SUMO-activ_enz_E1-like,tigrfam_UBQ-activ_enz_E1	-	no_errors	UBA6	HGNC	ENSG00000033178				86	0	0	65	4	5.7971
UBA6	0	genome.wustl.edu	37	4	68490772	68490772	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	68490772	68490772	C	A	SNP	UBA6	ENST00000322244	human	ensembl	74_37	-1	known	missense	c.2652	p.K884N	0.989	pfam_UBact_repeat,superfamily_Molybdenum_cofac_synth_MoeB,tigrfam_UBQ-activ_enz_E1	pfam_ThiF_NAD_FAD-bd,pfam_Ub-activating_enz_e1_C,pfam_UBact_repeat,pfam_Ubiquitin-activating_enzyme,superfamily_Molybdenum_cofac_synth_MoeB,prints_UBQ/SUMO-activ_enz_E1-like,tigrfam_UBQ-activ_enz_E1	-	no_errors	UBA6	HGNC	ENSG00000033178				78	0	0	70	6	7.89474
GNRHR	0	genome.wustl.edu	37	4	68610386	68610386	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	68610386	68610386	G	T	SNP	GNRHR	ENST00000226413	human	ensembl	74_37	-1	known	missense	c.642	p.F214L	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GphnRH_fam_rcpt,prints_GPCR_Rhodpsn,prints_Vasoprsn_rcpt	-	no_errors	GNRHR	HGNC	ENSG00000109163				131	0	0	92	25	21.3675
GNRHR	0	genome.wustl.edu	37	4	68610404	68610404	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	68610404	68610404	T	G	SNP	GNRHR	ENST00000226413	human	ensembl	74_37	-1	known	missense	c.624	p.Q208H	0.998	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GphnRH_fam_rcpt,prints_GPCR_Rhodpsn,prints_Vasoprsn_rcpt	-	no_errors	GNRHR	HGNC	ENSG00000109163				136	0	0	93	28	23.1405
GNRHR	0	genome.wustl.edu	37	4	68619626	68619626	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	68619626	68619626	A	T	SNP	GNRHR	ENST00000226413	human	ensembl	74_37	-1	known	missense	c.428	p.I143N	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GphnRH_fam_rcpt,prints_GPCR_Rhodpsn,prints_Vasoprsn_rcpt	-	no_errors	GNRHR	HGNC	ENSG00000109163				52	0	0	44	8	15.3846
KIAA0232	0	genome.wustl.edu	37	4	6863906	6863906	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	6863906	6863906	T	C	SNP	KIAA0232	ENST00000307659	human	ensembl	74_37	+1	known	silent	c.1797	p.G599	0.044	NULL	NULL	-	no_errors	KIAA0232	HGNC	ENSG00000170871				109	1	0.909091	113	9	7.37705
YTHDC1	0	genome.wustl.edu	37	4	69203419	69203419	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	69203419	69203419	A	G	SNP	YTHDC1	ENST00000344157	human	ensembl	74_37	-1	known	silent	c.330	p.D110	1.000	NULL	pfam_YTH_domain,pfscan_YTH_domain	-	no_errors	YTHDC1	HGNC	ENSG00000083896				119	0	0	80	6	6.97674
UGT2A3	0	genome.wustl.edu	37	4	69811057	69811057	+	Silent	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	69811057	69811057	T	G	SNP	UGT2A3	ENST00000251566	human	ensembl	74_37	-1	known	silent	c.831	p.G277	0.009	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT2A3	HGNC	ENSG00000135220				80	0	0	80	6	6.97674
TBC1D14	0	genome.wustl.edu	37	4	7011616	7011616	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	7011616	7011616	C	T	SNP	TBC1D14	ENST00000409757	human	ensembl	74_37	+1	known	missense	c.1459	p.H487Y	1.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D14	HGNC	ENSG00000132405				213	0	0	152	9	5.59006
TADA2B	0	genome.wustl.edu	37	4	7056629	7056629	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	7056629	7056629	A	G	SNP	TADA2B	ENST00000310074	human	ensembl	74_37	+1	known	missense	c.1111	p.T371A	1.000	superfamily_Homeodomain-like,pirsf_Transcriptional_adaptor_2	pfam_SANT/Myb,pfam_Znf_ZZ,superfamily_Homeodomain-like,smart_Znf_ZZ,smart_SANT/Myb,pirsf_Transcriptional_adaptor_2,pfscan_Znf_ZZ,pfscan_Myb-like_dom	-	no_errors	TADA2B	HGNC	ENSG00000173011				116	0	0	80	7	8.04598
SULT1B1	0	genome.wustl.edu	37	4	70592890	70592890	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	70592890	70592890	G	T	SNP	SULT1B1	ENST00000310613	human	ensembl	74_37	-1	known	missense	c.807	p.F269L	1.000	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	SULT1B1	HGNC	ENSG00000173597				89	0	0	57	4	6.55738
GRPEL1	0	genome.wustl.edu	37	4	7064145	7064145	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	7064145	7064145	T	C	SNP	GRPEL1	ENST00000264954	human	ensembl	74_37	-1	known	missense	c.274	p.S92G	1.000	pfam_GrpE,prints_GrpE	pfam_GrpE,superfamily_GrpE_head,prints_GrpE	-	no_errors	GRPEL1	HGNC	ENSG00000109519				183	0	0	141	12	7.84314
CABS1	0	genome.wustl.edu	37	4	71201519	71201519	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	71201519	71201519	G	A	SNP	CABS1	ENST00000273936	human	ensembl	74_37	+1	known	missense	c.763	p.A255T	0.000	NULL	NULL	-	no_errors	CABS1	HGNC	ENSG00000145309				86	0	0	56	8	12.5
ENAM	0	genome.wustl.edu	37	4	71508727	71508727	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	71508727	71508727	A	G	SNP	ENAM	ENST00000396073	human	ensembl	74_37	+1	known	silent	c.1584	p.P528	0.979	NULL	NULL	-	no_errors	ENAM	HGNC	ENSG00000132464				136	0	0	105	24	18.6047
RUFY3	0	genome.wustl.edu	37	4	71634299	71634299	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	71634299	71634299	C	T	SNP	RUFY3	ENST00000417478	human	ensembl	74_37	+1	known	missense	c.797	p.A266V	1.000	pfam_Run,smart_Run,pfscan_Run	pfam_Run,superfamily_Prefoldin,smart_Run,pfscan_Run	-	no_errors	RUFY3	HGNC	ENSG00000018189				193	0	0	151	14	8.48485
SLC4A4	0	genome.wustl.edu	37	4	72363287	72363287	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	72363287	72363287	G	A	SNP	SLC4A4	ENST00000425175	human	ensembl	74_37	+1	known	missense	c.2044	p.V682I	0.870	pfam_HCO3_transpt_C,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Na/HCO3_transpt,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A4	HGNC	ENSG00000080493				71	0	0	43	16	27.1186
SLC4A4	0	genome.wustl.edu	37	4	72429508	72429508	+	Splice_Site	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	72429508	72429508	A	G	SNP	SLC4A4	ENST00000264485	human	ensembl	74_37	+1	known	splice_site	c.3100-2	e23-2	1.000	-	-	-	no_errors	SLC4A4	HGNC	ENSG00000080493				193	1	0.515464	143	16	10.0629
NPFFR2	0	genome.wustl.edu	37	4	72994607	72994607	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	72994607	72994607	C	A	SNP	NPFFR2	ENST00000308744	human	ensembl	74_37	+1	known	missense	c.605	p.P202H	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_NPFF_rcpt_2,prints_NPFF_rcpt,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_NPFF_rcpt_2,prints_NPFF_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	NPFFR2	HGNC	ENSG00000056291				154	1	0.645161	120	9	6.97674
PCGF3	0	genome.wustl.edu	37	4	731294	731294	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	731294	731294	A	G	SNP	PCGF3	ENST00000362003	human	ensembl	74_37	+1	known	silent	c.246	p.V82	0.801	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	PCGF3	HGNC	ENSG00000185619				125	1	0.793651	94	11	10.4762
ANKRD17	0	genome.wustl.edu	37	4	73957601	73957601	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	73957601	73957601	C	T	SNP	ANKRD17	ENST00000358602	human	ensembl	74_37	-1	known	missense	c.5744	p.G1915D	1.000	NULL	pfam_Ankyrin_rpt,pfam_KH_dom_type_1,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_KH_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_KH_dom_type_1,prints_Ankyrin_rpt	-	no_errors	ANKRD17	HGNC	ENSG00000132466				89	0	0	79	11	12.2222
ANKRD17	0	genome.wustl.edu	37	4	73957799	73957799	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	73957799	73957799	G	A	SNP	ANKRD17	ENST00000358602	human	ensembl	74_37	-1	known	missense	c.5546	p.A1849V	1.000	NULL	pfam_Ankyrin_rpt,pfam_KH_dom_type_1,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_KH_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_KH_dom_type_1,prints_Ankyrin_rpt	-	no_errors	ANKRD17	HGNC	ENSG00000132466				175	0	0	149	16	9.69697
ANKRD17	0	genome.wustl.edu	37	4	74005740	74005740	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	74005740	74005740	T	A	SNP	ANKRD17	ENST00000358602	human	ensembl	74_37	-1	known	missense	c.2593	p.I865F	1.000	pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_KH_dom_type_1,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_KH_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_KH_dom_type_1,prints_Ankyrin_rpt	-	no_errors	ANKRD17	HGNC	ENSG00000132466				234	0	0	189	20	9.56938
ANKRD17	0	genome.wustl.edu	37	4	74007530	74007530	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	74007530	74007530	T	C	SNP	ANKRD17	ENST00000358602	human	ensembl	74_37	-1	known	missense	c.2260	p.M754V	1.000	pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_KH_dom_type_1,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_KH_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_KH_dom_type_1,prints_Ankyrin_rpt	-	no_errors	ANKRD17	HGNC	ENSG00000132466				57	0	0	36	4	10
ALB	0	genome.wustl.edu	37	4	74275073	74275073	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	74275073	74275073	T	A	SNP	ALB	ENST00000295897	human	ensembl	74_37	+1	known	missense	c.484	p.Y162N	0.127	pfam_Serum_albumin_N,superfamily_Serum_albumin-like,smart_Serum_albumin_N,pirsf_Serum_albumin/AFP,prints_ALB/AFP/VDB	pfam_Serum_albumin_N,superfamily_Serum_albumin-like,smart_Serum_albumin_N,pirsf_Serum_albumin/AFP,prints_ALB/AFP/VDB	-	no_errors	ALB	HGNC	ENSG00000163631				96	0	0	81	5	5.81395
PSAPL1	0	genome.wustl.edu	37	4	7435600	7435600	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	7435600	7435600	C	A	SNP	PSAPL1	ENST00000319098	human	ensembl	74_37	-1	known	missense	c.1007	p.C336F	0.084	pirsf_Saposin_chordata,pfam_SapB_2,superfamily_Saposin-like,smart_SaposinB,pfscan_SaposinB	pirsf_Saposin_chordata,pfam_SapA,pfam_SapB_1,pfam_SapB_2,superfamily_Saposin-like,smart_SapA,smart_SaposinB,prints_Saposin,pfscan_SapA,pfscan_SaposinB	-	no_errors	PSAPL1	HGNC	ENSG00000178597				93	0	0	98	7	6.66667
AFM	0	genome.wustl.edu	37	4	74357801	74357801	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	74357801	74357801	G	A	SNP	AFM	ENST00000226355	human	ensembl	74_37	+1	known	silent	c.1056	p.A352	0.652	pirsf_Serum_albumin/AFP,pfam_Serum_albumin_N,superfamily_Serum_albumin-like,smart_Serum_albumin_N,prints_ALB/AFP/VDB	pirsf_Serum_albumin/AFP,pfam_Serum_albumin_N,superfamily_Serum_albumin-like,smart_Serum_albumin_N,prints_ALB/AFP/VDB,prints_Alpha-fetoprotein	-	no_errors	AFM	HGNC	ENSG00000079557				70	0	0	33	13	28.2609
THAP6	0	genome.wustl.edu	37	4	76452318	76452318	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	76452318	76452318	G	T	SNP	THAP6	ENST00000311638	human	ensembl	74_37	+1	known	missense	c.563	p.R188M	1.000	NULL	pfam_Znf_C2CH,smart_Znf_C2CH,pfscan_Znf_C2CH	-	no_errors	THAP6	HGNC	ENSG00000174796				89	0	0	69	6	8
G3BP2	0	genome.wustl.edu	37	4	76582913	76582913	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	76582913	76582913	T	A	SNP	G3BP2	ENST00000359707	human	ensembl	74_37	-1	known	missense	c.179	p.D60V	1.000	pfam_NTF2,pfscan_Nuclear_transport_factor_2_euk	pfam_NTF2,pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,pfscan_Nuclear_transport_factor_2_euk	-	no_errors	G3BP2	HGNC	ENSG00000138757				147	0	0	121	12	9.02256
USO1	0	genome.wustl.edu	37	4	76731585	76731585	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	76731585	76731585	G	A	SNP	USO1	ENST00000538159	human	ensembl	74_37	+1	known	missense	c.2503	p.A835T	0.909	superfamily_ARM-type_fold	pfam_Vesicle_Uso1_P115_head,pfam_Uso1_p115_C,superfamily_ARM-type_fold,superfamily_t-SNARE	-	no_errors	USO1	HGNC	ENSG00000138768				39	0	0	23	4	14.8148
USO1	0	genome.wustl.edu	37	4	76734383	76734383	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	76734383	76734383	T	A	SNP	USO1	ENST00000538159	human	ensembl	74_37	+1	known	missense	c.2851	p.S951T	0.999	pfam_Uso1_p115_C,superfamily_ARM-type_fold	pfam_Vesicle_Uso1_P115_head,pfam_Uso1_p115_C,superfamily_ARM-type_fold,superfamily_t-SNARE	-	no_errors	USO1	HGNC	ENSG00000138768				105	0	0	73	10	12.0482
ART3	0	genome.wustl.edu	37	4	77003397	77003397	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	77003397	77003397	A	G	SNP	ART3	ENST00000355810	human	ensembl	74_37	+1	known	missense	c.490	p.T164A	0.000	pfam_ART	pfam_ART,prints_ART	-	no_errors	ART3	HGNC	ENSG00000156219				52	0	0	40	4	9.09091
NUP54	0	genome.wustl.edu	37	4	77057529	77057529	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	77057529	77057529	G	A	SNP	NUP54	ENST00000264883	human	ensembl	74_37	-1	known	missense	c.332	p.P111L	0.996	NULL	NULL	-	no_errors	NUP54	HGNC	ENSG00000138750				143	0	0	92	18	16.3636
SHROOM3	0	genome.wustl.edu	37	4	77677703	77677703	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	77677703	77677703	C	T	SNP	SHROOM3	ENST00000296043	human	ensembl	74_37	+1	known	missense	c.4811	p.S1604F	0.004	NULL	pfam_ASD2,pfam_ASD1,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM3	HGNC	ENSG00000138771				74	0	0	51	4	7.27273
SOWAHB	0	genome.wustl.edu	37	4	77817430	77817430	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	77817430	77817430	G	A	SNP	SOWAHB	ENST00000334306	human	ensembl	74_37	-1	known	missense	c.1573	p.R525C	0.877	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	SOWAHB	HGNC	ENSG00000186212				59	0	0	41	11	21.1538
AFAP1	0	genome.wustl.edu	37	4	7788020	7788020	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	7788020	7788020	A	G	SNP	AFAP1	ENST00000420658	human	ensembl	74_37	-1	known	silent	c.1431	p.V477	0.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	AFAP1	HGNC	ENSG00000196526				139	1	0.714286	92	10	9.80392
SEPT11	0	genome.wustl.edu	37	4	77926846	77926846	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	77926846	77926846	C	T	SNP	SEPT11	ENST00000541121	human	ensembl	74_37	+1	known	missense	c.265	p.R89W	0.996	pfam_Cell_div_GTP-bd,superfamily_P-loop_NTPase,pirsf_Septin	pfam_Cell_div_GTP-bd,superfamily_P-loop_NTPase,pirsf_Septin	-	no_errors	SEPT11	HGNC	ENSG00000138758				126	0	0	89	8	8.24742
AFAP1	0	genome.wustl.edu	37	4	7795484	7795484	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	7795484	7795484	G	A	SNP	AFAP1	ENST00000420658	human	ensembl	74_37	-1	known	missense	c.1336	p.P446S	1.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	AFAP1	HGNC	ENSG00000196526				173	0	0	146	12	7.59494
AFAP1	0	genome.wustl.edu	37	4	7840356	7840356	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	7840356	7840356	C	T	SNP	AFAP1	ENST00000420658	human	ensembl	74_37	-1	known	silent	c.621	p.P207	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	AFAP1	HGNC	ENSG00000196526				141	0	0	102	21	17.0732
FRAS1	0	genome.wustl.edu	37	4	79367983	79367983	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	79367983	79367983	G	A	SNP	FRAS1	ENST00000264895	human	ensembl	74_37	+1	known	missense	c.5959	p.D1987N	1.000	NULL	pfam_Calx_beta,pfam_VWF_C,superfamily_Growth_fac_rcpt_N_dom,superfamily_Cadherin-like,smart_VWC_out,smart_VWF_C,smart_Furin_repeat,smart_EG-like_dom,smart_Calx_beta,pfscan_VWF_C	-	no_errors	FRAS1	HGNC	ENSG00000138759				35	0	0	18	3	14.2857
FRAS1	0	genome.wustl.edu	37	4	79461776	79461776	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	79461776	79461776	C	T	SNP	FRAS1	ENST00000264895	human	ensembl	74_37	+1	known	missense	c.11537	p.A3846V	0.000	NULL	pfam_Calx_beta,pfam_VWF_C,superfamily_Growth_fac_rcpt_N_dom,superfamily_Cadherin-like,smart_VWC_out,smart_VWF_C,smart_Furin_repeat,smart_EG-like_dom,smart_Calx_beta,pfscan_VWF_C	-	no_errors	FRAS1	HGNC	ENSG00000138759				39	0	0	44	3	6.38298
BMP3	0	genome.wustl.edu	37	4	81967100	81967100	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	81967100	81967100	C	T	SNP	BMP3	ENST00000282701	human	ensembl	74_37	+1	known	silent	c.525	p.N175	1.000	pfam_TGF-b_N,pirsf_BMP3/GDF10	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C,pirsf_BMP3/GDF10	-	no_errors	BMP3	HGNC	ENSG00000152785				217	0	0	120	37	23.5669
BMP3	0	genome.wustl.edu	37	4	81967414	81967414	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	81967414	81967414	C	T	SNP	BMP3	ENST00000282701	human	ensembl	74_37	+1	known	missense	c.839	p.A280V	0.961	pirsf_BMP3/GDF10	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C,pirsf_BMP3/GDF10	-	no_errors	BMP3	HGNC	ENSG00000152785				92	0	0	86	13	13.1313
PRKG2	0	genome.wustl.edu	37	4	82096046	82096046	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	82096046	82096046	T	G	SNP	PRKG2	ENST00000264399	human	ensembl	74_37	-1	known	missense	c.529	p.I177L	1.000	superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pirsf_cGMP-dependent_protein_kinase,pfscan_cNMP-bd_dom	pfam_Prot_kinase_dom,pfam_cNMP-bd_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_cGMP-dependent_protein_kinase,pfscan_cNMP-bd_dom,pfscan_Prot_kinase_dom,prints_cGMP_dep_kinase,prints_cAMP/cGMP_kin	-	no_errors	PRKG2	HGNC	ENSG00000138669				169	0	0	132	12	8.33333
SH3TC1	0	genome.wustl.edu	37	4	8229166	8229166	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	8229166	8229166	A	T	SNP	SH3TC1	ENST00000245105	human	ensembl	74_37	+1	known	missense	c.1745	p.Y582F	1.000	smart_TPR_repeat	superfamily_SH3_domain,smart_SH3_domain,smart_TPR_repeat,pfscan_SH3_domain	-	no_errors	SH3TC1	HGNC	ENSG00000125089				109	0	0	106	7	6.19469
SH3TC1	0	genome.wustl.edu	37	4	8229515	8229515	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	8229515	8229515	G	A	SNP	SH3TC1	ENST00000245105	human	ensembl	74_37	+1	known	silent	c.2094	p.S698	0.000	smart_TPR_repeat	superfamily_SH3_domain,smart_SH3_domain,smart_TPR_repeat,pfscan_SH3_domain	-	no_errors	SH3TC1	HGNC	ENSG00000125089				46	0	0	30	9	23.0769
HTRA3	0	genome.wustl.edu	37	4	8271808	8271808	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	8271808	8271808	G	A	SNP	HTRA3	ENST00000307358	human	ensembl	74_37	+1	known	missense	c.113	p.R38H	0.999	smart_IGFBP-like	pfam_Peptidase_S1,pfam_Kazal_dom,pfam_PDZ,superfamily_Trypsin-like_Pept_dom,superfamily_PDZ,smart_IGFBP-like,smart_Kazal_dom,smart_PDZ,pfscan_PDZ,prints_Peptidase_S1C	-	no_errors	HTRA3	HGNC	ENSG00000170801				9	0	0	9	3	25
HTRA3	0	genome.wustl.edu	37	4	8307843	8307843	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	8307843	8307843	G	A	SNP	HTRA3	ENST00000307358	human	ensembl	74_37	+1	known	missense	c.1342	p.A448T	0.007	superfamily_PDZ	pfam_Peptidase_S1,pfam_Kazal_dom,pfam_PDZ,superfamily_Trypsin-like_Pept_dom,superfamily_PDZ,smart_IGFBP-like,smart_Kazal_dom,smart_PDZ,pfscan_PDZ,prints_Peptidase_S1C	-	no_errors	HTRA3	HGNC	ENSG00000170801				34	0	0	24	8	25
ENOPH1	0	genome.wustl.edu	37	4	83378162	83378162	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	83378162	83378162	A	G	SNP	ENOPH1	ENST00000273920	human	ensembl	74_37	+1	known	missense	c.617	p.N206S	1.000	pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_Enolase-ppase_E1,tigrfam_HAD-SF_hydro_IA	pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_Enolase-ppase_E1,tigrfam_HAD-SF_hydro_IA	-	no_errors	ENOPH1	HGNC	ENSG00000145293				104	0	0	72	10	12.1951
MRPS18C	0	genome.wustl.edu	37	4	84379541	84379541	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	84379541	84379541	T	C	SNP	MRPS18C	ENST00000295491	human	ensembl	74_37	+1	known	missense	c.193	p.C65R	1.000	superfamily_Ribosomal_S18,tigrfam_Ribosomal_S18	pfam_Ribosomal_S18,superfamily_Ribosomal_S18,tigrfam_Ribosomal_S18	-	no_errors	MRPS18C	HGNC	ENSG00000163319				88	0	0	64	7	9.85915
NKX6-1	0	genome.wustl.edu	37	4	85414655	85414655	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	85414655	85414655	G	A	SNP	NKX6-1	ENST00000295886	human	ensembl	74_37	-1	known	silent	c.891	p.A297	0.991	superfamily_Homeodomain-like,smart_Homeobox_dom	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_HTH_motif,prints_Homeobox_metazoa	-	no_errors	NKX6-1	HGNC	ENSG00000163623				92	0	0	72	7	8.86076
WDFY3	0	genome.wustl.edu	37	4	85612938	85612938	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	85612938	85612938	T	C	SNP	WDFY3	ENST00000295888	human	ensembl	74_37	-1	known	missense	c.9050	p.E3017G	1.000	NULL	pfam_BEACH_dom,pfam_Znf_FYVE,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_Znf_FYVE_PHD,superfamily_ConA-like_lec_gl_sf,superfamily_Cyclin-like,superfamily_ARM-type_fold,smart_WD40_repeat,smart_Znf_FYVE,pfscan_BEACH_dom,pfscan_Znf_FYVE-rel,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDFY3	HGNC	ENSG00000163625				40	0	0	40	7	14.8936
WDFY3	0	genome.wustl.edu	37	4	85657439	85657439	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	85657439	85657439	G	A	SNP	WDFY3	ENST00000295888	human	ensembl	74_37	-1	known	missense	c.6799	p.P2267S	1.000	NULL	pfam_BEACH_dom,pfam_Znf_FYVE,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_Znf_FYVE_PHD,superfamily_ConA-like_lec_gl_sf,superfamily_Cyclin-like,superfamily_ARM-type_fold,smart_WD40_repeat,smart_Znf_FYVE,pfscan_BEACH_dom,pfscan_Znf_FYVE-rel,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDFY3	HGNC	ENSG00000163625				79	0	0	75	7	8.53659
WDFY3	0	genome.wustl.edu	37	4	85658471	85658471	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	85658471	85658471	A	T	SNP	WDFY3	ENST00000295888	human	ensembl	74_37	-1	known	missense	c.6623	p.I2208K	1.000	NULL	pfam_BEACH_dom,pfam_Znf_FYVE,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_Znf_FYVE_PHD,superfamily_ConA-like_lec_gl_sf,superfamily_Cyclin-like,superfamily_ARM-type_fold,smart_WD40_repeat,smart_Znf_FYVE,pfscan_BEACH_dom,pfscan_Znf_FYVE-rel,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDFY3	HGNC	ENSG00000163625				84	0	0	63	9	12.5
WDFY3	0	genome.wustl.edu	37	4	85687073	85687073	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	85687073	85687073	A	G	SNP	WDFY3	ENST00000295888	human	ensembl	74_37	-1	known	missense	c.5078	p.V1693A	1.000	NULL	pfam_BEACH_dom,pfam_Znf_FYVE,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_Znf_FYVE_PHD,superfamily_ConA-like_lec_gl_sf,superfamily_Cyclin-like,superfamily_ARM-type_fold,smart_WD40_repeat,smart_Znf_FYVE,pfscan_BEACH_dom,pfscan_Znf_FYVE-rel,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDFY3	HGNC	ENSG00000163625				120	0	0	108	12	10
WDFY3	0	genome.wustl.edu	37	4	85707196	85707196	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	85707196	85707196	G	A	SNP	WDFY3	ENST00000295888	human	ensembl	74_37	-1	known	missense	c.3998	p.S1333F	1.000	NULL	pfam_BEACH_dom,pfam_Znf_FYVE,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_Znf_FYVE_PHD,superfamily_ConA-like_lec_gl_sf,superfamily_Cyclin-like,superfamily_ARM-type_fold,smart_WD40_repeat,smart_Znf_FYVE,pfscan_BEACH_dom,pfscan_Znf_FYVE-rel,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDFY3	HGNC	ENSG00000163625				92	0	0	75	9	10.7143
WDFY3	0	genome.wustl.edu	37	4	85771148	85771148	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	85771148	85771148	T	C	SNP	WDFY3	ENST00000295888	human	ensembl	74_37	-1	known	missense	c.211	p.T71A	1.000	NULL	pfam_BEACH_dom,pfam_Znf_FYVE,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_Znf_FYVE_PHD,superfamily_ConA-like_lec_gl_sf,superfamily_Cyclin-like,superfamily_ARM-type_fold,smart_WD40_repeat,smart_Znf_FYVE,pfscan_BEACH_dom,pfscan_Znf_FYVE-rel,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDFY3	HGNC	ENSG00000163625				140	0	0	106	6	5.35714
ARHGAP24	0	genome.wustl.edu	37	4	86916261	86916261	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	86916261	86916261	G	A	SNP	ARHGAP24	ENST00000395184	human	ensembl	74_37	+1	known	missense	c.1454	p.G485D	0.999	NULL	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom	-	no_errors	ARHGAP24	HGNC	ENSG00000138639				106	0	0	84	8	8.69565
ARHGAP24	0	genome.wustl.edu	37	4	86916682	86916682	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	86916682	86916682	T	C	SNP	ARHGAP24	ENST00000395184	human	ensembl	74_37	+1	known	silent	c.1875	p.S625	1.000	NULL	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom	-	no_errors	ARHGAP24	HGNC	ENSG00000138639				93	0	0	103	9	8.03571
PTPN13	0	genome.wustl.edu	37	4	87694086	87694086	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	87694086	87694086	A	G	SNP	PTPN13	ENST00000436978	human	ensembl	74_37	+1	known	missense	c.5339	p.E1780G	1.000	pirsf_Tyr_Pase_non-rcpt_typ-13,superfamily_PDZ	pirsf_Tyr_Pase_non-rcpt_typ-13,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_PDZ,pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_FERM_central,superfamily_PDZ,superfamily_PAZ_dom,smart_KIND,smart_Band_41_domain,smart_PDZ,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam,pfscan_FERM_domain,pfscan_PDZ,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN13	HGNC	ENSG00000163629				77	0	0	47	6	11.3208
C4orf36	0	genome.wustl.edu	37	4	87809323	87809323	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	87809323	87809323	C	T	SNP	C4orf36	ENST00000295898	human	ensembl	74_37	-1	known	silent	c.171	p.Q57	0.000	NULL	NULL	-	no_errors	C4orf36	HGNC	ENSG00000163633				79	0	0	80	8	9.09091
AFF1	0	genome.wustl.edu	37	4	87967930	87967930	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	87967930	87967930	G	T	SNP	AFF1	ENST00000395146	human	ensembl	74_37	+1	known	missense	c.243	p.K81N	0.002	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF1	HGNC	ENSG00000172493				294	0	0	251	20	7.38007
AFF1	0	genome.wustl.edu	37	4	88055677	88055677	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	88055677	88055677	A	G	SNP	AFF1	ENST00000395146	human	ensembl	74_37	+1	known	silent	c.3366	p.V1122	0.000	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF1	HGNC	ENSG00000172493				334	0	0	286	18	5.92105
SPARCL1	0	genome.wustl.edu	37	4	88394950	88394950	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	88394950	88394950	T	C	SNP	SPARCL1	ENST00000282470	human	ensembl	74_37	-1	known	missense	c.1972	p.I658V	1.000	pirsf_SPARC-like_p1	pfam_SPARC/Testican_Ca-bd-dom,pfam_Kazal_dom,pfam_Follistatin/Osteonectin_EGF,smart_Fol_N,smart_Kazal_dom,pirsf_SPARC-like_p1,pfscan_EF_hand_dom	-	no_errors	SPARCL1	HGNC	ENSG00000152583				149	0	0	112	10	8.19672
DSPP	0	genome.wustl.edu	37	4	88535299	88535299	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	88535299	88535299	T	C	SNP	DSPP	ENST00000282478	human	ensembl	74_37	+1	known	silent	c.1485	p.S495	0.897	NULL	NULL	-	no_errors	DSPP	HGNC	ENSG00000152591				62	0	0	46	13	22.0339
IBSP	0	genome.wustl.edu	37	4	88731774	88731774	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	88731774	88731774	G	T	SNP	IBSP	ENST00000226284	human	ensembl	74_37	+1	known	missense	c.263	p.G88V	0.994	pfam_BSP_II	pfam_BSP_II	-	no_errors	IBSP	HGNC	ENSG00000029559				107	0	0	81	6	6.89655
IBSP	0	genome.wustl.edu	37	4	88732877	88732877	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	88732877	88732877	G	A	SNP	IBSP	ENST00000226284	human	ensembl	74_37	+1	known	missense	c.769	p.V257I	0.000	pfam_BSP_II	pfam_BSP_II	-	no_errors	IBSP	HGNC	ENSG00000029559				38	0	0	41	4	8.88889
HERC5	0	genome.wustl.edu	37	4	89384765	89384765	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	89384765	89384765	A	G	SNP	HERC5	ENST00000264350	human	ensembl	74_37	+1	known	silent	c.771	p.L257	0.963	pfam_Reg_chr_condens,superfamily_RCC1/BLIP-II,pfscan_Reg_chr_condens,prints_Reg_chr_condens	pfam_HECT,pfam_Reg_chr_condens,superfamily_HECT,superfamily_RCC1/BLIP-II,superfamily_Haem_Oase-like_multi-hlx,smart_HECT,pfscan_HECT,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	HERC5	HGNC	ENSG00000138646				117	0	0	102	9	8.10811
HERC3	0	genome.wustl.edu	37	4	89577147	89577147	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	89577147	89577147	T	C	SNP	HERC3	ENST00000264345	human	ensembl	74_37	+1	known	missense	c.1030	p.Y344H	0.964	pfam_Reg_chr_condens,superfamily_RCC1/BLIP-II,pfscan_Reg_chr_condens	pfam_Reg_chr_condens,pfam_HECT,superfamily_HECT,superfamily_RCC1/BLIP-II,smart_HECT,pfscan_HECT,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	HERC3	HGNC	ENSG00000138641				74	0	0	55	4	6.77966
FAM13A	0	genome.wustl.edu	37	4	89668866	89668866	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	89668866	89668866	C	T	SNP	FAM13A	ENST00000264344	human	ensembl	74_37	-1	known	silent	c.2298	p.K766	0.959	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	FAM13A	HGNC	ENSG00000138640				277	0	0	230	20	8
TIGD2	0	genome.wustl.edu	37	4	90034768	90034768	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	90034768	90034768	G	A	SNP	TIGD2	ENST00000317005	human	ensembl	74_37	+1	known	missense	c.643	p.A215T	0.999	pfam_DDE_SF_endonuclease_CENPB-like	pfam_DDE_SF_endonuclease_CENPB-like,pfam_HTH_CenpB_DNA-bd_dom,pfam_HTH_Psq,superfamily_Homeodomain-like,smart_HTH_CenpB_DNA-bd_dom,pfscan_HTH_Psq	-	no_errors	TIGD2	HGNC	ENSG00000180346				94	0	0	64	20	23.8095
TMEM175	0	genome.wustl.edu	37	4	945436	945436	+	RNA	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	945436	945436	C	T	SNP	TMEM175	ENST00000504180	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TMEM175	HGNC	ENSG00000127419				89	0	0	72	21	22.5806
GRID2	0	genome.wustl.edu	37	4	94690472	94690472	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	94690472	94690472	C	T	SNP	GRID2	ENST00000282020	human	ensembl	74_37	+1	known	silent	c.2472	p.G824	0.120	pfam_Iontro_glu_rcpt	pfam_Iontro_glu_rcpt,pfam_ANF_lig-bd_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRID2	HGNC	ENSG00000152208				107	0	0	94	12	11.3208
TMEM175	0	genome.wustl.edu	37	4	949616	949616	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	949616	949616	C	T	SNP	TMEM175	ENST00000264771	human	ensembl	74_37	+1	known	silent	c.780	p.R260	0.842	pfam_DUF1211_TMEM175	pfam_DUF1211_TMEM175	-	no_errors	TMEM175	HGNC	ENSG00000127419				51	0	0	39	7	15.2174
SMARCAD1	0	genome.wustl.edu	37	4	95162126	95162126	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	95162126	95162126	A	T	SNP	SMARCAD1	ENST00000359052	human	ensembl	74_37	+1	known	missense	c.674	p.D225V	1.000	NULL	pfam_SNF2_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_UBA-like,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_CUE,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SMARCAD1	HGNC	ENSG00000163104				61	0	0	35	4	10.2564
SMARCAD1	0	genome.wustl.edu	37	4	95174135	95174135	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	95174135	95174135	C	T	SNP	SMARCAD1	ENST00000359052	human	ensembl	74_37	+1	known	missense	c.1258	p.P420S	1.000	NULL	pfam_SNF2_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_UBA-like,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_CUE,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SMARCAD1	HGNC	ENSG00000163104				169	0	0	145	13	8.22785
BMPR1B	0	genome.wustl.edu	37	4	96025677	96025677	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	96025677	96025677	C	T	SNP	BMPR1B	ENST00000440890	human	ensembl	74_37	+1	known	silent	c.192	p.C64	1.000	pfam_Activin_rcpt	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_TGF_beta_rcpt_GS,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_TGF_beta_rcpt_GS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_TGFB_receptor	-	no_errors	BMPR1B	HGNC	ENSG00000138696				88	0	0	44	9	16.9811
BMPR1B	0	genome.wustl.edu	37	4	96035907	96035907	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	96035907	96035907	T	C	SNP	BMPR1B	ENST00000440890	human	ensembl	74_37	+1	known	silent	c.270	p.D90	1.000	pfam_Activin_rcpt	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_TGF_beta_rcpt_GS,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_TGF_beta_rcpt_GS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_TGFB_receptor	-	no_errors	BMPR1B	HGNC	ENSG00000138696				281	0	0	178	55	23.6052
PDHA2	0	genome.wustl.edu	37	4	96761865	96761865	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	96761865	96761865	T	C	SNP	PDHA2	ENST00000295266	human	ensembl	74_37	+1	known	silent	c.564	p.C188	0.963	pfam_DH_E1,tigrfam_Pyrv_DH_E1_asu_subgrp-y	pfam_DH_E1,tigrfam_Pyrv_DH_E1_asu_subgrp-y	-	no_errors	PDHA2	HGNC	ENSG00000163114				88	0	0	73	9	10.9756
SLC26A1	0	genome.wustl.edu	37	4	985234	985234	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	985234	985234	C	A	SNP	SLC26A1	ENST00000361661	human	ensembl	74_37	-1	known	missense	c.258	p.Q86H	1.000	tigrfam_SulP_transpt	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	-	no_errors	SLC26A1	HGNC	ENSG00000145217				106	0	0	82	9	9.89011
IDUA	0	genome.wustl.edu	37	4	996113	996113	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	996113	996113	C	T	SNP	IDUA	ENST00000453894	human	ensembl	74_37	+1	known	silent	c.1095	p.Y365	0.002	pfam_Glyco_hydro_39,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_39,superfamily_Glycoside_hydrolase_SF,superfamily_Fibronectin_type3,prints_Glyco_hydro_39	-	no_errors	IDUA	HGNC	ENSG00000127415				27	0	0	24	3	11.1111
IDUA	0	genome.wustl.edu	37	4	996128	996128	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	996128	996128	C	T	SNP	IDUA	ENST00000453894	human	ensembl	74_37	+1	known	silent	c.1110	p.N370	0.995	pfam_Glyco_hydro_39,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_39,superfamily_Glycoside_hydrolase_SF,superfamily_Fibronectin_type3,prints_Glyco_hydro_39	-	no_errors	IDUA	HGNC	ENSG00000127415				31	0	0	30	3	9.09091
METAP1	0	genome.wustl.edu	37	4	99969899	99969899	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	99969899	99969899	G	A	SNP	METAP1	ENST00000296411	human	ensembl	74_37	+1	known	missense	c.803	p.R268Q	1.000	pfam_Pept_M24_structural-domain,superfamily_Pept_M24_structural-domain,tigrfam_Pept_M24A_MAP1	pfam_Pept_M24_structural-domain,superfamily_Pept_M24_structural-domain,prints_Pept_M24_MAP,tigrfam_Pept_M24A_MAP1	-	no_errors	METAP1	HGNC	ENSG00000164024				163	0	0	117	35	23.0263
SLCO4C1	0	genome.wustl.edu	37	5	101606335	101606335	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	101606335	101606335	G	A	SNP	SLCO4C1	ENST00000310954	human	ensembl	74_37	-1	known	silent	c.795	p.L265	1.000	pfam_OA_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO4C1	HGNC	ENSG00000173930				91	0	0	57	18	24
SLCO4C1	0	genome.wustl.edu	37	5	101627089	101627089	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	101627089	101627089	G	A	SNP	SLCO4C1	ENST00000310954	human	ensembl	74_37	-1	known	nonsense	c.577	p.Q193*	0.995	pfam_OA_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO4C1	HGNC	ENSG00000173930				92	0	0	47	6	11.3208
SLCO6A1	0	genome.wustl.edu	37	5	101774410	101774410	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	101774410	101774410	T	C	SNP	SLCO6A1	ENST00000379807	human	ensembl	74_37	-1	known	missense	c.1187	p.Y396C	0.000	pfam_OA_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal_dom,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	-	no_errors	SLCO6A1	HGNC	ENSG00000205359				117	0	0	66	34	34
PPIP5K2	0	genome.wustl.edu	37	5	102509634	102509634	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	102509634	102509634	A	G	SNP	PPIP5K2	ENST00000358359	human	ensembl	74_37	+1	known	silent	c.2487	p.V829	0.998	pfam_His_Pase_superF_clade-2	pfam_His_Pase_superF_clade-2	-	no_errors	PPIP5K2	HGNC	ENSG00000145725				126	0	0	97	8	7.61905
ROPN1L	0	genome.wustl.edu	37	5	10464976	10464976	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	10464976	10464976	G	A	SNP	ROPN1L	ENST00000274134	human	ensembl	74_37	+1	known	missense	c.610	p.G204S	0.888	NULL	superfamily_cAMP_dep_PK_reg_su_I/II_a/b	-	no_errors	ROPN1L	HGNC	ENSG00000145491				156	0	0	91	29	24.1667
EFNA5	0	genome.wustl.edu	37	5	106763092	106763092	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	106763092	106763092	C	T	SNP	EFNA5	ENST00000333274	human	ensembl	74_37	-1	known	missense	c.244	p.V82M	1.000	pfam_Ephrin,superfamily_Cupredoxin,prints_Ephrin	pfam_Ephrin,superfamily_Cupredoxin,prints_Ephrin	-	no_errors	EFNA5	HGNC	ENSG00000184349				185	0	0	143	14	8.9172
FER	0	genome.wustl.edu	37	5	108290576	108290576	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	108290576	108290576	T	C	SNP	FER	ENST00000281092	human	ensembl	74_37	+1	known	silent	c.1476	p.Y492	1.000	pirsf_Tyr_kinase_non-rcpt_Fes_subgr,pfam_SH2,smart_SH2,prints_SH2,pfscan_SH2	pirsf_Tyr_kinase_non-rcpt_Fes_subgr,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_FCH_dom,superfamily_Kinase-like_dom,smart_FCH_dom,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,pfscan_FCH_dom,pfscan_SH2,pfscan_Prot_kinase_dom	-	no_errors	FER	HGNC	ENSG00000151422				164	0	0	104	12	10.3448
FER	0	genome.wustl.edu	37	5	108523190	108523190	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	108523190	108523190	A	G	SNP	FER	ENST00000281092	human	ensembl	74_37	+1	known	missense	c.2383	p.K795E	0.999	pirsf_Tyr_kinase_non-rcpt_Fes_subgr,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Tyr_kinase_non-rcpt_Fes_subgr,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_FCH_dom,superfamily_Kinase-like_dom,smart_FCH_dom,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,pfscan_FCH_dom,pfscan_SH2,pfscan_Prot_kinase_dom	-	no_errors	FER	HGNC	ENSG00000151422				111	0	0	88	7	7.36842
PJA2	0	genome.wustl.edu	37	5	108698724	108698724	+	Splice_Site	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	108698724	108698724	C	A	SNP	PJA2	ENST00000361189	human	ensembl	74_37	-1	known	splice_site	c.1470-1	e5-1	1.000	-	-	-	no_errors	PJA2	HGNC	ENSG00000198961				165	1	0.60241	143	11	7.14286
PJA2	0	genome.wustl.edu	37	5	108717314	108717314	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	108717314	108717314	G	T	SNP	PJA2	ENST00000361189	human	ensembl	74_37	-1	known	missense	c.122	p.A41D	0.999	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	PJA2	HGNC	ENSG00000198961				101	0	0	78	5	6.0241
MAN2A1	0	genome.wustl.edu	37	5	109049437	109049437	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	109049437	109049437	T	C	SNP	MAN2A1	ENST00000261483	human	ensembl	74_37	+1	known	missense	c.352	p.F118L	0.993	superfamily_Glyco_hydro/deAcase_b/a-brl	pfam_Glyco_hydro_38_N,pfam_Glyco_hydro_38_C,pfam_Glyco_hydro_38_cen_dom,superfamily_Gal_mutarotase_SF_dom,superfamily_Glyco_hydro/deAcase_b/a-brl,smart_Glyco_hydro_38_cen_dom	-	no_errors	MAN2A1	HGNC	ENSG00000112893				139	0	0	101	14	12.1739
CTNND2	0	genome.wustl.edu	37	5	10992687	10992687	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	10992687	10992687	G	A	SNP	CTNND2	ENST00000304623	human	ensembl	74_37	-1	known	missense	c.3187	p.R1063C	1.000	NULL	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	CTNND2	HGNC	ENSG00000169862				71	0	0	70	9	11.3924
WDR36	0	genome.wustl.edu	37	5	110428101	110428101	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	110428101	110428101	G	T	SNP	WDR36	ENST00000506538	human	ensembl	74_37	+1	known	missense	c.115	p.G39C	0.000	NULL	pfam_SSU_processome_Utp21,pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like_supfam,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR36	HGNC	ENSG00000134987				93	0	0	109	12	9.91736
CAMK4	0	genome.wustl.edu	37	5	110712562	110712562	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	110712562	110712562	A	G	SNP	CAMK4	ENST00000282356	human	ensembl	74_37	+1	known	missense	c.308	p.K103R	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CAMK4	HGNC	ENSG00000152495				157	0	0	103	14	11.9658
CAMK4	0	genome.wustl.edu	37	5	110730432	110730432	+	Nonstop_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	110730432	110730432	T	C	SNP	CAMK4	ENST00000514007	human	ensembl	74_37	+1	known	nonstop	c.328	p.*110R	1.000	NULL	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,pfscan_Prot_kinase_dom	-	no_errors	CAMK4	HGNC	ENSG00000152495				113	0	0	78	5	6.0241
EPB41L4A	0	genome.wustl.edu	37	5	111500719	111500719	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	111500719	111500719	T	C	SNP	EPB41L4A	ENST00000261486	human	ensembl	74_37	-1	known	missense	c.2029	p.I677V	0.787	NULL	pfam_FERM_central,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	EPB41L4A	HGNC	ENSG00000129595				73	0	0	40	4	9.09091
EPB41L4A	0	genome.wustl.edu	37	5	111600664	111600664	+	Silent	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	111600664	111600664	A	C	SNP	EPB41L4A	ENST00000261486	human	ensembl	74_37	-1	known	silent	c.483	p.S161	0.984	pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	pfam_FERM_central,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	EPB41L4A	HGNC	ENSG00000129595				202	0	0	143	8	5.29801
APC	0	genome.wustl.edu	37	5	112178940	112178940	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	112178940	112178940	A	T	SNP	APC	ENST00000257430	human	ensembl	74_37	+1	known	missense	c.7649	p.E2550V	1.000	pfam_APC_basic_dom	pfam_APC_basic_dom,pfam_EB1-bd,pfam_APC_Cys-rich_rpt,pfam_Armadillo,pfam_APC_dom,pfam_SAMP,pfam_APC_15aa_rpt,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	APC	HGNC	ENSG00000134982				138	0	0	109	11	9.16667
SRP19	0	genome.wustl.edu	37	5	112200164	112200164	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	112200164	112200164	A	G	SNP	SRP19	ENST00000505459	human	ensembl	74_37	+1	known	missense	c.128	p.N43S	1.000	pfam_Signal_recog_particle_SRP19,superfamily_Signal_recog_particle_SRP19	pfam_Signal_recog_particle_SRP19,superfamily_Signal_recog_particle_SRP19	-	no_errors	SRP19	HGNC	ENSG00000153037				137	0	0	87	15	14.7059
MCC	0	genome.wustl.edu	37	5	112406914	112406914	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	112406914	112406914	T	C	SNP	MCC	ENST00000302475	human	ensembl	74_37	-1	known	missense	c.1232	p.K411R	1.000	pfam_USH1C-bd_PDZ_domain	pfam_USH1C-bd_PDZ_domain,superfamily_tRNA-bd_arm	-	no_errors	MCC	HGNC	ENSG00000171444				169	0	0	127	13	9.28571
CTNND2	0	genome.wustl.edu	37	5	11411702	11411702	+	Silent	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	11411702	11411702	T	G	SNP	CTNND2	ENST00000304623	human	ensembl	74_37	-1	known	silent	c.385	p.R129	1.000	NULL	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	CTNND2	HGNC	ENSG00000169862				90	0	0	54	16	22.8571
TRIM36	0	genome.wustl.edu	37	5	114462533	114462533	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	114462533	114462533	A	G	SNP	TRIM36	ENST00000282369	human	ensembl	74_37	-1	known	silent	c.1854	p.H618	0.963	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,pfscan_B30.2/SPRY	pfam_Znf_B-box,pfam_Fibronectin_type3,pfam_SPRY_rcpt,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Znf_RING,smart_Znf_B-box,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM36	HGNC	ENSG00000152503				68	0	0	55	3	5.17241
PGGT1B	0	genome.wustl.edu	37	5	114548274	114548274	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	114548274	114548274	A	G	SNP	PGGT1B	ENST00000419445	human	ensembl	74_37	-1	known	missense	c.959	p.L320S	1.000	pfam_Prenyltrans,superfamily_Terpenoid_cyclase/PrenylTrfase	pfam_Prenyltrans,superfamily_Terpenoid_cyclase/PrenylTrfase	-	no_errors	PGGT1B	HGNC	ENSG00000164219				70	0	0	55	7	11.2903
SEMA6A	0	genome.wustl.edu	37	5	115782800	115782800	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	115782800	115782800	C	T	SNP	SEMA6A	ENST00000257414	human	ensembl	74_37	-1	known	missense	c.2653	p.V885M	1.000	NULL	pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,pfscan_Semap_dom	-	no_errors	SEMA6A	HGNC	ENSG00000092421				240	0	0	223	17	7.08333
DMXL1	0	genome.wustl.edu	37	5	118513830	118513830	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	118513830	118513830	G	A	SNP	DMXL1	ENST00000539542	human	ensembl	74_37	+1	known	silent	c.7026	p.E2342	1.000	NULL	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL1	HGNC	ENSG00000172869				152	0	0	118	7	5.6
FAM170A	0	genome.wustl.edu	37	5	118970053	118970053	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	118970053	118970053	C	T	SNP	FAM170A	ENST00000515256	human	ensembl	74_37	+1	known	missense	c.610	p.P204S	0.001	NULL	NULL	-	no_errors	FAM170A	HGNC	ENSG00000164334				91	0	0	105	6	5.40541
PRR16	0	genome.wustl.edu	37	5	120022012	120022012	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	120022012	120022012	C	G	SNP	PRR16	ENST00000407149	human	ensembl	74_37	+1	known	missense	c.523	p.P175A	0.990	NULL	NULL	-	no_errors	PRR16	HGNC	ENSG00000184838				80	0	0	62	4	6.06061
LOX	0	genome.wustl.edu	37	5	121409723	121409723	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	121409723	121409723	A	G	SNP	LOX	ENST00000231004	human	ensembl	74_37	-1	known	silent	c.1020	p.C340	0.995	pfam_Lysyl_oxidase,prints_Lysyl_oxidase	pfam_Lysyl_oxidase,prints_Lysyl_oxidase	-	no_errors	LOX	HGNC	ENSG00000113083				264	1	0.377358	248	23	8.48708
SNCAIP	0	genome.wustl.edu	37	5	121767674	121767674	+	Nonsense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	121767674	121767674	T	A	SNP	SNCAIP	ENST00000379533	human	ensembl	74_37	+1	known	nonsense	c.1334	p.L445*	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	SNCAIP	HGNC	ENSG00000064692				52	0	0	46	4	8
SNCAIP	0	genome.wustl.edu	37	5	121786643	121786643	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	121786643	121786643	C	T	SNP	SNCAIP	ENST00000379533	human	ensembl	74_37	+1	known	missense	c.2242	p.P748S	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	SNCAIP	HGNC	ENSG00000064692				56	0	0	39	8	17.0213
SNCAIP	0	genome.wustl.edu	37	5	121786917	121786917	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	121786917	121786917	C	T	SNP	SNCAIP	ENST00000379533	human	ensembl	74_37	+1	known	missense	c.2516	p.A839V	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	SNCAIP	HGNC	ENSG00000064692				56	0	0	55	3	5.17241
CSNK1G3	0	genome.wustl.edu	37	5	122926221	122926221	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	122926221	122926221	A	T	SNP	CSNK1G3	ENST00000360683	human	ensembl	74_37	+1	known	missense	c.959	p.D320V	1.000	superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Casein_kinase-1_gamma_C,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CSNK1G3	HGNC	ENSG00000151292				216	0	0	104	10	8.77193
ZNF608	0	genome.wustl.edu	37	5	123982525	123982525	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	123982525	123982525	C	A	SNP	ZNF608	ENST00000306315	human	ensembl	74_37	-1	known	missense	c.3552	p.Q1184H	1.000	NULL	NULL	-	no_errors	ZNF608	HGNC	ENSG00000168916				215	0	0	162	15	8.47458
ZNF608	0	genome.wustl.edu	37	5	123984764	123984764	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	123984764	123984764	G	A	SNP	ZNF608	ENST00000306315	human	ensembl	74_37	-1	known	missense	c.1313	p.A438V	0.997	NULL	NULL	-	no_errors	ZNF608	HGNC	ENSG00000168916				65	0	0	50	13	20.6349
ZNF608	0	genome.wustl.edu	37	5	124080438	124080438	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	124080438	124080438	C	T	SNP	ZNF608	ENST00000306315	human	ensembl	74_37	-1	known	missense	c.245	p.G82D	1.000	NULL	NULL	-	no_errors	ZNF608	HGNC	ENSG00000168916				80	0	0	76	6	7.31707
ZNF608	0	genome.wustl.edu	37	5	124080611	124080611	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	124080611	124080611	A	G	SNP	ZNF608	ENST00000306315	human	ensembl	74_37	-1	known	silent	c.72	p.D24	1.000	NULL	NULL	-	no_errors	ZNF608	HGNC	ENSG00000168916				102	0	0	82	8	8.88889
GRAMD3	0	genome.wustl.edu	37	5	125805413	125805413	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	125805413	125805413	A	G	SNP	GRAMD3	ENST00000542322	human	ensembl	74_37	+1	known	missense	c.272	p.N91S	0.778	NULL	pfam_GRAM,smart_GRAM	-	no_errors	GRAMD3	HGNC	ENSG00000155324				233	0	0	168	17	9.18919
MARCH3	0	genome.wustl.edu	37	5	126206470	126206470	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	126206470	126206470	T	C	SNP	MARCH3	ENST00000308660	human	ensembl	74_37	-1	known	missense	c.617	p.Y206C	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH,pfscan_Znf_RING	-	no_errors	MARCH3	HGNC	ENSG00000173926				42	0	0	41	4	8.88889
MARCH3	0	genome.wustl.edu	37	5	126250640	126250640	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	126250640	126250640	T	C	SNP	MARCH3	ENST00000308660	human	ensembl	74_37	-1	known	silent	c.375	p.K125	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH,pfscan_Znf_RING	-	no_errors	MARCH3	HGNC	ENSG00000173926				64	0	0	58	6	9.375
MEGF10	0	genome.wustl.edu	37	5	126783362	126783362	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	126783362	126783362	A	T	SNP	MEGF10	ENST00000274473	human	ensembl	74_37	+1	known	missense	c.2842	p.M948L	0.998	NULL	pfam_EGF_laminin,pfam_EGF_extracell,superfamily_Proteinase_amylase_inhib_dom,smart_EG-like_dom,smart_EGF_laminin,pfscan_EG-like_dom,pfscan_EMI_domain	-	no_errors	MEGF10	HGNC	ENSG00000145794				71	0	0	60	8	11.7647
SLC12A2	0	genome.wustl.edu	37	5	127520070	127520070	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	127520070	127520070	T	C	SNP	SLC12A2	ENST00000262461	human	ensembl	74_37	+1	known	silent	c.3312	p.F1104	1.000	tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease/SLC12A_dom,pfam_AA_permease_N,prints_Na/K/Cl_cotranspt1,prints_Na/K/Cl_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A2	HGNC	ENSG00000064651				174	0	0	114	8	6.55738
SLC12A2	0	genome.wustl.edu	37	5	127520484	127520484	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	127520484	127520484	T	C	SNP	SLC12A2	ENST00000262461	human	ensembl	74_37	+1	known	missense	c.3439	p.Y1147H	0.990	tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease/SLC12A_dom,pfam_AA_permease_N,prints_Na/K/Cl_cotranspt1,prints_Na/K/Cl_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A2	HGNC	ENSG00000064651				267	0	0	162	17	9.49721
FBN2	0	genome.wustl.edu	37	5	127645675	127645675	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	127645675	127645675	C	A	SNP	FBN2	ENST00000262464	human	ensembl	74_37	-1	known	missense	c.5200	p.D1734Y	1.000	pirsf_FBN,superfamily_TB_dom	pirsf_FBN,pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Cadherin-like,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	FBN2	HGNC	ENSG00000138829				109	1	0.909091	82	6	6.81818
FBN2	0	genome.wustl.edu	37	5	127686696	127686696	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	127686696	127686696	G	A	SNP	FBN2	ENST00000262464	human	ensembl	74_37	-1	known	silent	c.2676	p.D892	1.000	pirsf_FBN,superfamily_TB_dom	pirsf_FBN,pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Cadherin-like,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	FBN2	HGNC	ENSG00000138829				100	0	0	76	5	6.17284
FBN2	0	genome.wustl.edu	37	5	127704962	127704962	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	127704962	127704962	C	T	SNP	FBN2	ENST00000262464	human	ensembl	74_37	-1	known	missense	c.2161	p.G721S	0.996	pirsf_FBN,pfam_TB_dom,superfamily_TB_dom	pirsf_FBN,pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Cadherin-like,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	FBN2	HGNC	ENSG00000138829				97	0	0	83	14	14.433
SLC27A6	0	genome.wustl.edu	37	5	128320892	128320892	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	128320892	128320892	A	G	SNP	SLC27A6	ENST00000262462	human	ensembl	74_37	+1	known	missense	c.548	p.K183R	0.992	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	SLC27A6	HGNC	ENSG00000113396				58	0	0	54	3	5.26316
ADAMTS19	0	genome.wustl.edu	37	5	129001264	129001264	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	129001264	129001264	G	A	SNP	ADAMTS19	ENST00000274487	human	ensembl	74_37	+1	known	missense	c.2480	p.S827N	1.000	pfam_ADAM_spacer1	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_PLAC,pfam_Pept_M10_metallopeptidase,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS19	HGNC	ENSG00000145808				28	0	0	23	4	14.8148
CHSY3	0	genome.wustl.edu	37	5	129243849	129243849	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	129243849	129243849	T	C	SNP	CHSY3	ENST00000305031	human	ensembl	74_37	+1	known	silent	c.882	p.I294	0.010	pfam_Fringe-like	pfam_Chond_GalNAc,pfam_Fringe-like	-	no_errors	CHSY3	HGNC	ENSG00000198108				59	0	0	47	7	12.963
FNIP1	0	genome.wustl.edu	37	5	131042175	131042175	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	131042175	131042175	A	G	SNP	FNIP1	ENST00000510461	human	ensembl	74_37	-1	known	silent	c.843	p.C281	1.000	NULL	NULL	-	no_errors	FNIP1	HGNC	ENSG00000217128				82	0	0	67	6	8.21918
FNIP1	0	genome.wustl.edu	37	5	131055060	131055060	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	131055060	131055060	G	A	SNP	FNIP1	ENST00000510461	human	ensembl	74_37	-1	known	silent	c.405	p.G135	1.000	NULL	NULL	-	no_errors	FNIP1	HGNC	ENSG00000217128				68	0	0	49	3	5.76923
ACSL6	0	genome.wustl.edu	37	5	131323899	131323899	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	131323899	131323899	C	T	SNP	ACSL6	ENST00000296869	human	ensembl	74_37	-1	known	missense	c.673	p.V225M	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSL6	HGNC	ENSG00000164398				238	0	0	233	13	5.28455
AFF4	0	genome.wustl.edu	37	5	132232641	132232641	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	132232641	132232641	T	C	SNP	AFF4	ENST00000265343	human	ensembl	74_37	-1	known	missense	c.1681	p.T561A	1.000	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF4	HGNC	ENSG00000072364				180	0	0	166	13	7.26257
HSPA4	0	genome.wustl.edu	37	5	132412488	132412488	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	132412488	132412488	A	T	SNP	HSPA4	ENST00000304858	human	ensembl	74_37	+1	known	missense	c.806	p.E269V	1.000	pfam_Hsp_70_fam,pfam_MreB_Mrl	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPA4	HGNC	ENSG00000170606				100	0	0	71	8	10.1266
SEC24A	0	genome.wustl.edu	37	5	133997109	133997109	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	133997109	133997109	C	A	SNP	SEC24A	ENST00000398844	human	ensembl	74_37	+1	known	missense	c.398	p.P133Q	0.013	NULL	pfam_Sec23/24_trunk_dom,pfam_Sec23/24_helical_dom,pfam_Sec23_24_beta_S,pfam_Znf_Sec23_Sec24,pfam_Gelsolin_dom,superfamily_Sec23/24_helical_dom	-	no_errors	SEC24A	HGNC	ENSG00000113615				107	1	0.925926	112	7	5.88235
DDX46	0	genome.wustl.edu	37	5	134130617	134130617	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	134130617	134130617	G	T	SNP	DDX46	ENST00000452510	human	ensembl	74_37	+1	known	missense	c.1704	p.E568D	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX46	HGNC	ENSG00000145833				201	0	0	181	14	7.17949
CATSPER3	0	genome.wustl.edu	37	5	134303734	134303734	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	134303734	134303734	T	C	SNP	CATSPER3	ENST00000282611	human	ensembl	74_37	+1	known	missense	c.53	p.V18A	0.000	NULL	pfam_Ion_trans_dom,pfam_PKD1_2_channel	-	no_errors	CATSPER3	HGNC	ENSG00000152705				67	0	0	58	5	7.93651
H2AFY	0	genome.wustl.edu	37	5	134681658	134681658	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	134681658	134681658	C	T	SNP	H2AFY	ENST00000511689	human	ensembl	74_37	-1	known	missense	c.778	p.A260T	1.000	pfam_Macro_dom,smart_Macro_dom,pirsf_Core_histone_macro-H2A,pfscan_Macro_dom	pfam_Macro_dom,pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H2A,smart_Macro_dom,pirsf_Core_histone_macro-H2A,prints_Histone_H2A,pfscan_Macro_dom	-	no_errors	H2AFY	HGNC	ENSG00000113648				83	0	0	58	12	17.1429
NEUROG1	0	genome.wustl.edu	37	5	134871139	134871139	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	134871139	134871139	C	T	SNP	NEUROG1	ENST00000314744	human	ensembl	74_37	-1	known	missense	c.242	p.R81H	0.057	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	NEUROG1	HGNC	ENSG00000181965				9	0	0	5	4	44.4444
SLC25A48	0	genome.wustl.edu	37	5	135207269	135207269	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	135207269	135207269	G	A	SNP	SLC25A48	ENST00000420621	human	ensembl	74_37	+1	known	missense	c.541	p.A181T	0.954	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	-	no_errors	SLC25A48	HGNC	ENSG00000145832				116	0	0	123	16	11.5108
DNAH5	0	genome.wustl.edu	37	5	13735943	13735943	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	13735943	13735943	C	A	SNP	DNAH5	ENST00000265104	human	ensembl	74_37	-1	known	missense	c.11554	p.D3852Y	1.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139				127	0	0	93	30	24.3902
NME5	0	genome.wustl.edu	37	5	137454523	137454523	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	137454523	137454523	T	C	SNP	NME5	ENST00000265191	human	ensembl	74_37	-1	known	missense	c.539	p.K180R	1.000	pfam_Dpy-30_motif,pirsf_NDK_H5	pfam_Nucleoside_diP_kinase,pfam_Dpy-30_motif,superfamily_Nucleoside_diP_kinase,smart_Nucleoside_diP_kinase,pirsf_NDK_H5,prints_Nucleoside_diP_kinase	-	no_errors	NME5	HGNC	ENSG00000112981				78	0	0	37	8	17.7778
BRD8	0	genome.wustl.edu	37	5	137492899	137492899	+	Nonstop_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	137492899	137492899	A	G	SNP	BRD8	ENST00000230901	human	ensembl	74_37	-1	known	nonstop	c.2854	p.*952R	1.000	NULL	pfam_Bromodomain,superfamily_Bromodomain,superfamily_Peptidase_M20_dimer,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRD8	HGNC	ENSG00000112983				139	0	0	114	10	8.06452
BRD8	0	genome.wustl.edu	37	5	137500695	137500695	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	137500695	137500695	A	G	SNP	BRD8	ENST00000254900	human	ensembl	74_37	-1	known	missense	c.1439	p.V480A	0.995	NULL	pfam_Bromodomain,superfamily_Bromodomain,superfamily_Peptidase_M20_dimer,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRD8	HGNC	ENSG00000112983				154	0	0	136	13	8.72483
DNAH5	0	genome.wustl.edu	37	5	13759025	13759025	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	13759025	13759025	T	C	SNP	DNAH5	ENST00000265104	human	ensembl	74_37	-1	known	missense	c.10349	p.E3450G	1.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139				171	0	0	155	9	5.4878
GFRA3	0	genome.wustl.edu	37	5	137593531	137593531	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	137593531	137593531	G	A	SNP	GFRA3	ENST00000274721	human	ensembl	74_37	-1	known	silent	c.582	p.H194	0.000	pfam_GDNF/GAS1,smart_GDNF/GAS1,prints_GDNF_rcpt	pfam_GDNF/GAS1,smart_GDNF/GAS1,prints_GDNF_rcpt,prints_GDNF_rcpt_A3	-	no_errors	GFRA3	HGNC	ENSG00000146013				37	0	0	39	9	18.75
CDC25C	0	genome.wustl.edu	37	5	137665314	137665314	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	137665314	137665314	C	T	SNP	CDC25C	ENST00000323760	human	ensembl	74_37	-1	known	missense	c.217	p.D73N	1.000	NULL	pfam_MPI_Phosphatase,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,pfscan_Rhodanese-like_dom,prints_MPI_Phosphatase	-	no_errors	CDC25C	HGNC	ENSG00000158402				147	0	0	121	13	9.70149
FAM53C	0	genome.wustl.edu	37	5	137677511	137677511	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	137677511	137677511	A	G	SNP	FAM53C	ENST00000239906	human	ensembl	74_37	+1	known	missense	c.92	p.H31R	1.000	NULL	NULL	-	no_errors	FAM53C	HGNC	ENSG00000120709				174	1	0.571429	108	21	16.2791
KDM3B	0	genome.wustl.edu	37	5	137722193	137722193	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	137722193	137722193	A	G	SNP	KDM3B	ENST00000314358	human	ensembl	74_37	+1	known	silent	c.1263	p.A421	1.000	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	KDM3B	HGNC	ENSG00000120733				87	0	0	75	5	6.25
ETF1	0	genome.wustl.edu	37	5	137844390	137844390	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	137844390	137844390	G	A	SNP	ETF1	ENST00000360541	human	ensembl	74_37	-1	known	missense	c.1199	p.S400F	1.000	pfam_eRF1_3,tigrfam_Peptide_chain-rel_eRF1/aRF1	pfam_eRF1_2,pfam_eRF1_3,pfam_eRF1_1_Pelota,superfamily_Release_factor_eRF1/aRF1_N,tigrfam_Peptide_chain-rel_eRF1/aRF1	-	no_errors	ETF1	HGNC	ENSG00000120705				292	0	0	212	31	12.7572
SIL1	0	genome.wustl.edu	37	5	138282992	138282992	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	138282992	138282992	T	C	SNP	SIL1	ENST00000265195	human	ensembl	74_37	-1	known	silent	c.1200	p.T400	0.005	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	SIL1	HGNC	ENSG00000120725				46	0	0	48	6	11.1111
MATR3	0	genome.wustl.edu	37	5	138658651	138658651	+	Nonsense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	138658651	138658651	A	T	SNP	MATR3	ENST00000361059	human	ensembl	74_37	+1	known	nonsense	c.2143	p.K715*	1.000	NULL	smart_Znf_U1,smart_RRM_dom,pfscan_Znf_C2H2_matrin,pfscan_RRM_dom	-	no_errors	MATR3	HGNC	ENSG00000015479				73	0	0	65	7	9.72222
SLC23A1	0	genome.wustl.edu	37	5	138718265	138718265	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	138718265	138718265	C	T	SNP	SLC23A1	ENST00000353963	human	ensembl	74_37	-1	known	silent	c.66	p.P22	0.088	NULL	pfam_Xant/urac/vitC	-	no_errors	SLC23A1	HGNC	ENSG00000170482				65	0	0	53	17	24.2857
DNAH5	0	genome.wustl.edu	37	5	13919401	13919401	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	13919401	13919401	G	A	SNP	DNAH5	ENST00000265104	human	ensembl	74_37	-1	known	silent	c.859	p.L287	0.730	pfam_Dynein_heavy_dom-1	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139				266	0	0	193	27	12.2727
SLC4A9	0	genome.wustl.edu	37	5	139742516	139742516	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	139742516	139742516	G	A	SNP	SLC4A9	ENST00000230993	human	ensembl	74_37	+1	known	missense	c.899	p.R300H	0.998	pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Na/HCO3_transpt,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A9	HGNC	ENSG00000113073				148	0	0	117	24	17.0213
ANKHD1	0	genome.wustl.edu	37	5	139884538	139884538	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	139884538	139884538	A	G	SNP	ANKHD1	ENST00000297183	human	ensembl	74_37	+1	known	missense	c.3137	p.D1046G	1.000	pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_KH_dom_type_1,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_KH_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_KH_dom_type_1,prints_Ankyrin_rpt	-	no_errors	ANKHD1	HGNC	ENSG00000131503				135	0	0	96	6	5.88235
SRA1	0	genome.wustl.edu	37	5	139930498	139930498	+	Splice_Site	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	139930498	139930498	T	C	SNP	SRA1	ENST00000336283	human	ensembl	74_37	-1	known	splice_site	c.500-2	e5-2	1.000	-	-	-	no_errors	SRA1	HGNC	ENSG00000213523				52	0	0	42	4	8.69565
APBB3	0	genome.wustl.edu	37	5	139941253	139941253	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	139941253	139941253	G	A	SNP	APBB3	ENST00000356738	human	ensembl	74_37	-1	known	silent	c.681	p.S227	1.000	pfam_PTB/PI_dom,smart_PTB/PI_dom,pfscan_PTB/PI_dom	pfam_PTB/PI_dom,pfam_WW_dom,superfamily_WW_dom,smart_WW_dom,smart_PTB/PI_dom,pfscan_PTB/PI_dom,pfscan_WW_dom	-	no_errors	APBB3	HGNC	ENSG00000113108				83	0	0	79	8	9.1954
SLC35A4	0	genome.wustl.edu	37	5	139947206	139947206	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	139947206	139947206	C	A	SNP	SLC35A4	ENST00000323146	human	ensembl	74_37	+1	known	missense	c.452	p.A151D	0.177	pfam_Nuc_sug_transpt,pfam_DMT,pirsf_UDP/CMP-sugar_transptr	pfam_Nuc_sug_transpt,pfam_DMT,pirsf_UDP/CMP-sugar_transptr	-	no_errors	SLC35A4	HGNC	ENSG00000176087				56	0	0	64	4	5.88235
PCDHA2	0	genome.wustl.edu	37	5	140176593	140176593	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	140176593	140176593	G	A	SNP	PCDHA2	ENST00000526136	human	ensembl	74_37	+1	known	missense	c.2044	p.A682T	0.003	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA2	HGNC	ENSG00000204969				122	0	0	125	13	9.42029
PCDHA2	0	genome.wustl.edu	37	5	140176640	140176640	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	140176640	140176640	C	T	SNP	PCDHA2	ENST00000526136	human	ensembl	74_37	+1	known	silent	c.2091	p.N697	0.994	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA2	HGNC	ENSG00000204969				129	0	0	134	15	10.0671
PCDHA3	0	genome.wustl.edu	37	5	140182255	140182255	+	Silent	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	140182255	140182255	C	A	SNP	PCDHA3	ENST00000522353	human	ensembl	74_37	+1	known	silent	c.1473	p.S491	0.247	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA3	HGNC	ENSG00000255408				119	0	0	139	10	6.71141
PCDHA4	0	genome.wustl.edu	37	5	140188402	140188402	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	140188402	140188402	C	A	SNP	PCDHA4	ENST00000530339	human	ensembl	74_37	+1	known	missense	c.1630	p.P544T	0.001	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA4	HGNC	ENSG00000204967				99	0	0	99	8	7.47664
PCDHA5	0	genome.wustl.edu	37	5	140202809	140202809	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	140202809	140202809	G	A	SNP	PCDHA5	ENST00000529859	human	ensembl	74_37	+1	known	silent	c.1449	p.A483	0.635	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA5	HGNC	ENSG00000204965				114	0	0	90	19	17.4312
PCDHA5	0	genome.wustl.edu	37	5	140203209	140203209	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	140203209	140203209	G	A	SNP	PCDHA5	ENST00000529859	human	ensembl	74_37	+1	known	missense	c.1849	p.A617T	0.243	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA5	HGNC	ENSG00000204965				59	0	0	55	24	30.3797
PCDHA6	0	genome.wustl.edu	37	5	140207924	140207924	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	140207924	140207924	T	C	SNP	PCDHA6	ENST00000529310	human	ensembl	74_37	+1	known	missense	c.248	p.I83T	0.154	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA6	HGNC	ENSG00000081842				259	0	0	220	22	9.09091
PCDHA7	0	genome.wustl.edu	37	5	140214222	140214222	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	140214222	140214222	T	C	SNP	PCDHA7	ENST00000525929	human	ensembl	74_37	+1	known	missense	c.254	p.F85S	0.999	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA7	HGNC	ENSG00000204963				299	0	0	254	24	8.63309
PCDHA8	0	genome.wustl.edu	37	5	140222879	140222879	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	140222879	140222879	C	T	SNP	PCDHA8	ENST00000531613	human	ensembl	74_37	+1	known	missense	c.1973	p.A658V	0.070	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA8	HGNC	ENSG00000204962				104	0	0	82	23	21.9048
PCDHA9	0	genome.wustl.edu	37	5	140230182	140230182	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	140230182	140230182	T	C	SNP	PCDHA9	ENST00000532602	human	ensembl	74_37	+1	known	missense	c.2102	p.I701T	0.999	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA9	HGNC	ENSG00000204961				89	0	0	89	5	5.31915
PCDHA11	0	genome.wustl.edu	37	5	140248964	140248964	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	140248964	140248964	C	T	SNP	PCDHA11	ENST00000398640	human	ensembl	74_37	+1	known	silent	c.276	p.R92	0.288	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA11	HGNC	ENSG00000249158				259	0	0	251	18	6.69145
PCDHA11	0	genome.wustl.edu	37	5	140249904	140249904	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	140249904	140249904	T	C	SNP	PCDHA11	ENST00000398640	human	ensembl	74_37	+1	known	silent	c.1216	p.L406	0.551	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA11	HGNC	ENSG00000249158				166	0	0	154	16	9.41176
PCDHA11	0	genome.wustl.edu	37	5	140250499	140250499	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	140250499	140250499	C	T	SNP	PCDHA11	ENST00000398640	human	ensembl	74_37	+1	known	missense	c.1811	p.A604V	0.994	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA11	HGNC	ENSG00000249158				87	0	0	92	9	8.91089
PCDHA11	0	genome.wustl.edu	37	5	140250882	140250882	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	140250882	140250882	G	A	SNP	PCDHA11	ENST00000398640	human	ensembl	74_37	+1	known	missense	c.2194	p.A732T	0.248	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA11	HGNC	ENSG00000249158				29	0	0	27	10	27.027
PCDHA12	0	genome.wustl.edu	37	5	140256548	140256548	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	140256548	140256548	G	A	SNP	PCDHA12	ENST00000398631	human	ensembl	74_37	+1	known	silent	c.1491	p.R497	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA12	HGNC	ENSG00000251664				100	0	0	98	10	9.25926
PCDHA13	0	genome.wustl.edu	37	5	140263955	140263955	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	140263955	140263955	T	C	SNP	PCDHA13	ENST00000289272	human	ensembl	74_37	+1	known	missense	c.2102	p.I701T	0.900	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA13	HGNC	ENSG00000239389				118	0	0	101	7	6.48148
PCDHB1	0	genome.wustl.edu	37	5	140431551	140431551	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	140431551	140431551	G	A	SNP	PCDHB1	ENST00000306549	human	ensembl	74_37	+1	known	missense	c.496	p.G166S	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB1	HGNC	ENSG00000171815				72	0	0	60	8	11.7647
PCDHB1	0	genome.wustl.edu	37	5	140433299	140433299	+	Silent	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	140433299	140433299	C	A	SNP	PCDHB1	ENST00000306549	human	ensembl	74_37	+1	known	silent	c.2244	p.S748	0.377	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB1	HGNC	ENSG00000171815				114	0	0	85	8	8.60215
PCDHB3	0	genome.wustl.edu	37	5	140481490	140481490	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	140481490	140481490	T	C	SNP	PCDHB3	ENST00000231130	human	ensembl	74_37	+1	known	silent	c.1257	p.I419	0.997	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB3	HGNC	ENSG00000113205				72	0	0	90	11	10.8911
PCDHB4	0	genome.wustl.edu	37	5	140501585	140501585	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	140501585	140501585	A	G	SNP	PCDHB4	ENST00000194152	human	ensembl	74_37	+1	known	missense	c.5	p.K2R	0.691	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB4	HGNC	ENSG00000081818				49	0	0	41	13	24.0741
PCDHB5	0	genome.wustl.edu	37	5	140515442	140515442	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	140515442	140515442	C	T	SNP	PCDHB5	ENST00000231134	human	ensembl	74_37	+1	known	silent	c.426	p.I142	0.008	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB5	HGNC	ENSG00000113209				103	0	0	81	20	19.802
PCDHB5	0	genome.wustl.edu	37	5	140515648	140515648	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	140515648	140515648	C	T	SNP	PCDHB5	ENST00000231134	human	ensembl	74_37	+1	known	missense	c.632	p.T211I	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB5	HGNC	ENSG00000113209				97	0	0	106	7	6.19469
PCDHB5	0	genome.wustl.edu	37	5	140516313	140516313	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	140516313	140516313	G	A	SNP	PCDHB5	ENST00000231134	human	ensembl	74_37	+1	known	missense	c.1297	p.E433K	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB5	HGNC	ENSG00000113209				107	0	0	96	10	9.43396
PCDHB5	0	genome.wustl.edu	37	5	140516700	140516700	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	140516700	140516700	T	C	SNP	PCDHB5	ENST00000231134	human	ensembl	74_37	+1	known	missense	c.1684	p.Y562H	1.000	superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB5	HGNC	ENSG00000113209				67	0	0	70	6	7.89474
PCDHB6	0	genome.wustl.edu	37	5	140531928	140531928	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	140531928	140531928	C	T	SNP	PCDHB6	ENST00000231136	human	ensembl	74_37	+1	known	missense	c.2090	p.S697L	0.939	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB6	HGNC	ENSG00000113211				153	0	0	152	19	11.1111
ENSG00000255622	0	genome.wustl.edu	37	5	140536963	140536963	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	140536963	140536963	G	A	SNP	ENSG00000255622	ENST00000539533	human	ensembl	74_37	+1	known	missense	c.1387	p.E463K	1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB17	Uniprot_gn	ENSG00000255622				107	0	0	97	14	12.6126
ENSG00000255622	0	genome.wustl.edu	37	5	140537167	140537167	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	140537167	140537167	C	T	SNP	ENSG00000255622	ENST00000539533	human	ensembl	74_37	+1	known	missense	c.1591	p.R531C	0.001	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB17	Uniprot_gn	ENSG00000255622				89	0	0	82	13	13.6842
PCDHB7	0	genome.wustl.edu	37	5	140553330	140553330	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	140553330	140553330	C	T	SNP	PCDHB7	ENST00000231137	human	ensembl	74_37	+1	known	missense	c.914	p.A305V	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB7	HGNC	ENSG00000113212				105	0	0	79	8	9.1954
PCDHB7	0	genome.wustl.edu	37	5	140554319	140554319	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	140554319	140554319	G	A	SNP	PCDHB7	ENST00000231137	human	ensembl	74_37	+1	known	missense	c.1903	p.A635T	0.492	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB7	HGNC	ENSG00000113212				145	0	0	161	9	5.29412
PCDHB7	0	genome.wustl.edu	37	5	140554538	140554538	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	140554538	140554538	G	A	SNP	PCDHB7	ENST00000231137	human	ensembl	74_37	+1	known	missense	c.2122	p.A708T	0.311	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB7	HGNC	ENSG00000113212				251	0	0	284	16	5.33333
PCDHB8	0	genome.wustl.edu	37	5	140559013	140559013	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	140559013	140559013	C	T	SNP	PCDHB8	ENST00000239444	human	ensembl	74_37	+1	known	silent	c.1398	p.S466	0.996	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB8	HGNC	ENSG00000120322				229	0	0	221	28	11.245
PCDHB8	0	genome.wustl.edu	37	5	140559044	140559044	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	140559044	140559044	A	G	SNP	PCDHB8	ENST00000239444	human	ensembl	74_37	+1	known	missense	c.1429	p.T477A	0.124	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB8	HGNC	ENSG00000120322				196	0	0	189	12	5.97015
PCDHB8	0	genome.wustl.edu	37	5	140559515	140559515	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	140559515	140559515	C	T	SNP	PCDHB8	ENST00000239444	human	ensembl	74_37	+1	known	missense	c.1900	p.R634C	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB8	HGNC	ENSG00000120322				57	0	0	64	5	7.24638
PCDHB16	0	genome.wustl.edu	37	5	140564217	140564217	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	140564217	140564217	G	A	SNP	PCDHB16	ENST00000361016	human	ensembl	74_37	+1	known	missense	c.2083	p.A695T	0.992	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB16	HGNC	ENSG00000196963				131	0	0	148	10	6.32911
PCDHB12	0	genome.wustl.edu	37	5	140589857	140589857	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	140589857	140589857	G	A	SNP	PCDHB12	ENST00000239450	human	ensembl	74_37	+1	known	missense	c.1378	p.V460I	0.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB12	HGNC	ENSG00000120328				112	0	0	76	38	33.3333
PCDHB14	0	genome.wustl.edu	37	5	140603685	140603685	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	140603685	140603685	A	G	SNP	PCDHB14	ENST00000239449	human	ensembl	74_37	+1	known	missense	c.608	p.E203G	0.994	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB14	HGNC	ENSG00000120327				90	0	0	70	11	13.5802
PCDHB14	0	genome.wustl.edu	37	5	140605248	140605248	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	140605248	140605248	G	A	SNP	PCDHB14	ENST00000239449	human	ensembl	74_37	+1	known	missense	c.2171	p.R724H	0.001	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB14	HGNC	ENSG00000120327				221	0	0	134	47	25.9669
PCDHB15	0	genome.wustl.edu	37	5	140626180	140626180	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	140626180	140626180	C	T	SNP	PCDHB15	ENST00000231173	human	ensembl	74_37	+1	known	missense	c.1034	p.P345L	0.996	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB15	HGNC	ENSG00000113248				140	0	0	85	6	6.59341
SLC25A2	0	genome.wustl.edu	37	5	140683071	140683071	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	140683071	140683071	G	A	SNP	SLC25A2	ENST00000239451	human	ensembl	74_37	-1	known	missense	c.362	p.A121V	0.928	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	SLC25A2	HGNC	ENSG00000120329				171	0	0	128	9	6.56934
SLC25A2	0	genome.wustl.edu	37	5	140683297	140683297	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	140683297	140683297	C	T	SNP	SLC25A2	ENST00000239451	human	ensembl	74_37	-1	known	missense	c.136	p.G46S	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	SLC25A2	HGNC	ENSG00000120329				82	0	0	81	7	7.95455
TAF7	0	genome.wustl.edu	37	5	140699608	140699608	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	140699608	140699608	T	A	SNP	TAF7	ENST00000313368	human	ensembl	74_37	-1	known	missense	c.4	p.S2C	1.000	NULL	pfam_TAFII55_prot_cons_reg	-	no_errors	TAF7	HGNC	ENSG00000178913				57	0	0	45	4	8.16327
PCDHGA2	0	genome.wustl.edu	37	5	140719387	140719387	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	140719387	140719387	A	G	SNP	PCDHGA2	ENST00000394576	human	ensembl	74_37	+1	known	silent	c.849	p.K283	0.006	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA2	HGNC	ENSG00000081853				208	0	0	200	13	6.10329
PCDHGA2	0	genome.wustl.edu	37	5	140720359	140720359	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	140720359	140720359	C	T	SNP	PCDHGA2	ENST00000394576	human	ensembl	74_37	+1	known	silent	c.1821	p.H607	0.486	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA2	HGNC	ENSG00000081853				93	0	0	111	10	8.26446
PCDHGA2	0	genome.wustl.edu	37	5	140720427	140720427	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	140720427	140720427	G	A	SNP	PCDHGA2	ENST00000394576	human	ensembl	74_37	+1	known	missense	c.1889	p.R630Q	0.659	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA2	HGNC	ENSG00000081853				77	0	0	81	5	5.81395
PCDHGA3	0	genome.wustl.edu	37	5	140724148	140724148	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	140724148	140724148	A	C	SNP	PCDHGA3	ENST00000253812	human	ensembl	74_37	+1	known	missense	c.548	p.N183T	0.986	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA3	HGNC	ENSG00000254245				148	0	0	147	8	5.16129
PCDHGA3	0	genome.wustl.edu	37	5	140724815	140724815	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	140724815	140724815	G	A	SNP	PCDHGA3	ENST00000253812	human	ensembl	74_37	+1	known	silent	c.1215	p.V405	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA3	HGNC	ENSG00000254245				103	0	0	70	10	12.5
PCDHGA3	0	genome.wustl.edu	37	5	140725277	140725277	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	140725277	140725277	G	A	SNP	PCDHGA3	ENST00000253812	human	ensembl	74_37	+1	known	silent	c.1677	p.A559	0.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA3	HGNC	ENSG00000254245				137	0	0	152	8	5
PCDHGB1	0	genome.wustl.edu	37	5	140730650	140730650	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	140730650	140730650	A	G	SNP	PCDHGB1	ENST00000523390	human	ensembl	74_37	+1	known	missense	c.823	p.T275A	0.990	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB1	HGNC	ENSG00000254221				140	0	0	125	15	10.7143
PCDHGA4	0	genome.wustl.edu	37	5	140735028	140735028	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	140735028	140735028	G	A	SNP	PCDHGA4	ENST00000571252	human	ensembl	74_37	+1	known	silent	c.261	p.A87	0.988	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA4	HGNC	ENSG00000262576				84	0	0	57	8	12.3077
PCDHGB2	0	genome.wustl.edu	37	5	140741611	140741611	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	140741611	140741611	G	A	SNP	PCDHGB2	ENST00000522605	human	ensembl	74_37	+1	known	missense	c.1909	p.A637T	0.878	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB2	HGNC	ENSG00000253910				25	0	0	25	6	19.3548
PCDHGA5	0	genome.wustl.edu	37	5	140745654	140745654	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	140745654	140745654	A	G	SNP	PCDHGA5	ENST00000518069	human	ensembl	74_37	+1	known	missense	c.1757	p.Y586C	1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA5	HGNC	ENSG00000253485				96	0	0	74	12	13.9535
PCDHGB3	0	genome.wustl.edu	37	5	140751474	140751474	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	140751474	140751474	G	A	SNP	PCDHGB3	ENST00000576222	human	ensembl	74_37	+1	known	missense	c.1513	p.V505M	0.044	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB3	HGNC	ENSG00000262209				87	0	0	80	9	10.1124
PCDHGA7	0	genome.wustl.edu	37	5	140763143	140763143	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	140763143	140763143	C	T	SNP	PCDHGA7	ENST00000518325	human	ensembl	74_37	+1	known	missense	c.677	p.A226V	0.001	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA7	HGNC	ENSG00000253537				23	0	0	25	3	10.7143
PCDHGA7	0	genome.wustl.edu	37	5	140764596	140764596	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	140764596	140764596	A	G	SNP	PCDHGA7	ENST00000518325	human	ensembl	74_37	+1	known	silent	c.2130	p.V710	0.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA7	HGNC	ENSG00000253537				68	0	0	74	4	5.12821
PCDHGB4	0	genome.wustl.edu	37	5	140769090	140769090	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	140769090	140769090	C	T	SNP	PCDHGB4	ENST00000519479	human	ensembl	74_37	+1	known	missense	c.1639	p.R547C	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB4	HGNC	ENSG00000253953				47	0	0	46	17	26.9841
PCDHGA8	0	genome.wustl.edu	37	5	140773828	140773828	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	140773828	140773828	A	G	SNP	PCDHGA8	ENST00000398604	human	ensembl	74_37	+1	known	missense	c.1448	p.E483G	0.440	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA8	HGNC	ENSG00000253767				39	0	0	28	4	12.5
PCDHGA8	0	genome.wustl.edu	37	5	140774055	140774055	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	140774055	140774055	G	A	SNP	PCDHGA8	ENST00000398604	human	ensembl	74_37	+1	known	missense	c.1675	p.A559T	0.009	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA8	HGNC	ENSG00000253767				132	0	0	120	16	11.7647
PCDHGA9	0	genome.wustl.edu	37	5	140784150	140784150	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	140784150	140784150	G	A	SNP	PCDHGA9	ENST00000573521	human	ensembl	74_37	+1	known	missense	c.1631	p.S544N	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA9	HGNC	ENSG00000261934				111	0	0	100	6	5.66038
PCDHGB7	0	genome.wustl.edu	37	5	140797634	140797634	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	140797634	140797634	G	T	SNP	PCDHGB7	ENST00000398594	human	ensembl	74_37	+1	known	missense	c.208	p.A70S	0.665	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB7	HGNC	ENSG00000254122				69	0	0	49	3	5.76923
PCDHGB7	0	genome.wustl.edu	37	5	140799290	140799290	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	140799290	140799290	C	T	SNP	PCDHGB7	ENST00000398594	human	ensembl	74_37	+1	known	nonsense	c.1864	p.R622*	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB7	HGNC	ENSG00000254122				77	0	0	80	8	9.09091
PCDHGA11	0	genome.wustl.edu	37	5	140800891	140800891	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	140800891	140800891	C	T	SNP	PCDHGA11	ENST00000398587	human	ensembl	74_37	+1	known	nonsense	c.97	p.R33*	1.000	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA11	HGNC	ENSG00000253873				39	0	0	39	4	9.30233
PCDHGA11	0	genome.wustl.edu	37	5	140802352	140802352	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	140802352	140802352	T	A	SNP	PCDHGA11	ENST00000398587	human	ensembl	74_37	+1	known	missense	c.1558	p.S520T	0.986	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA11	HGNC	ENSG00000253873				124	0	0	120	11	8.39695
PCDHGA12	0	genome.wustl.edu	37	5	140812139	140812139	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	140812139	140812139	T	C	SNP	PCDHGA12	ENST00000252085	human	ensembl	74_37	+1	known	missense	c.1813	p.S605P	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA12	HGNC	ENSG00000253159				86	0	0	97	32	24.8062
PCDHGA12	0	genome.wustl.edu	37	5	140812199	140812199	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	140812199	140812199	G	A	SNP	PCDHGA12	ENST00000252085	human	ensembl	74_37	+1	known	missense	c.1873	p.E625K	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA12	HGNC	ENSG00000253159				79	0	0	78	23	22.7723
PCDHGC3	0	genome.wustl.edu	37	5	140857037	140857037	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	140857037	140857037	G	A	SNP	PCDHGC3	ENST00000308177	human	ensembl	74_37	+1	known	missense	c.1354	p.D452N	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGC3	HGNC	ENSG00000240184				153	0	0	134	15	10.0671
PCDHGC4	0	genome.wustl.edu	37	5	140866146	140866146	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	140866146	140866146	G	A	SNP	PCDHGC4	ENST00000306593	human	ensembl	74_37	+1	known	missense	c.1406	p.R469H	0.993	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGC4	HGNC	ENSG00000242419				147	1	0.675676	141	12	7.84314
PCDH1	0	genome.wustl.edu	37	5	141243630	141243630	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	141243630	141243630	T	C	SNP	PCDH1	ENST00000287008	human	ensembl	74_37	-1	known	missense	c.2266	p.I756V	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH1	HGNC	ENSG00000156453				39	0	0	39	7	15.2174
PCDH1	0	genome.wustl.edu	37	5	141244610	141244610	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	141244610	141244610	G	A	SNP	PCDH1	ENST00000287008	human	ensembl	74_37	-1	known	missense	c.1286	p.A429V	0.994	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH1	HGNC	ENSG00000156453				111	0	0	107	13	10.8333
PCDH1	0	genome.wustl.edu	37	5	141248319	141248319	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	141248319	141248319	G	A	SNP	PCDH1	ENST00000287008	human	ensembl	74_37	-1	known	missense	c.718	p.R240C	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH1	HGNC	ENSG00000156453				46	0	0	56	4	6.66667
PCDH12	0	genome.wustl.edu	37	5	141336597	141336597	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	141336597	141336597	C	T	SNP	PCDH12	ENST00000231484	human	ensembl	74_37	-1	known	missense	c.820	p.G274S	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH12	HGNC	ENSG00000113555				73	0	0	83	6	6.74157
RNF14	0	genome.wustl.edu	37	5	141354437	141354437	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	141354437	141354437	C	A	SNP	RNF14	ENST00000347642	human	ensembl	74_37	+1	known	missense	c.223	p.L75M	1.000	pfam_RWD-domain,superfamily_UBQ-conjugating_enzyme/RWD,smart_RWD-domain,pfscan_RWD-domain	pfam_RWD-domain,pfam_Znf_C6HC,superfamily_UBQ-conjugating_enzyme/RWD,smart_RWD-domain,smart_Znf_C6HC,pfscan_RWD-domain,pfscan_Znf_RING	-	no_errors	RNF14	HGNC	ENSG00000013561				159	0	0	115	13	10.1562
YIPF5	0	genome.wustl.edu	37	5	143545034	143545034	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	143545034	143545034	T	C	SNP	YIPF5	ENST00000274496	human	ensembl	74_37	-1	known	missense	c.245	p.Y82C	1.000	NULL	pfam_Yip1	-	no_errors	YIPF5	HGNC	ENSG00000145817				117	0	0	82	8	8.88889
TRIO	0	genome.wustl.edu	37	5	14358294	14358294	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	14358294	14358294	C	T	SNP	TRIO	ENST00000344204	human	ensembl	74_37	+1	known	missense	c.2054	p.T685M	1.000	smart_Spectrin/alpha-actinin	pfam_DH-domain,pfam_Prot_kinase_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,superfamily_Capsid/spike_ssDNA_virus,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	TRIO	HGNC	ENSG00000038382				30	0	0	24	3	11.1111
TRIO	0	genome.wustl.edu	37	5	14485290	14485290	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	14485290	14485290	G	T	SNP	TRIO	ENST00000344204	human	ensembl	74_37	+1	known	missense	c.6770	p.S2257I	1.000	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,pfam_Prot_kinase_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,superfamily_Capsid/spike_ssDNA_virus,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	TRIO	HGNC	ENSG00000038382				144	0	0	109	6	5.21739
TRIO	0	genome.wustl.edu	37	5	14492761	14492761	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	14492761	14492761	A	G	SNP	TRIO	ENST00000344204	human	ensembl	74_37	+1	known	missense	c.7718	p.Y2573C	0.985	superfamily_SH3_domain,smart_SH3_domain	pfam_DH-domain,pfam_Prot_kinase_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,superfamily_Capsid/spike_ssDNA_virus,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	TRIO	HGNC	ENSG00000038382				35	0	0	34	3	8.10811
PLAC8L1	0	genome.wustl.edu	37	5	145477795	145477795	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	145477795	145477795	C	T	SNP	PLAC8L1	ENST00000311450	human	ensembl	74_37	-1	known	silent	c.180	p.T60	0.608	NULL	pfam_Uncharacterised_Cys-rich,tigrfam_Uncharacterised_Cys-rich	-	no_errors	PLAC8L1	HGNC	ENSG00000173261				103	0	0	83	10	10.7527
LARS	0	genome.wustl.edu	37	5	145537173	145537173	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	145537173	145537173	A	T	SNP	LARS	ENST00000394434	human	ensembl	74_37	-1	known	missense	c.858	p.N286K	0.997	pfam_aa-tRNA-synth_Ia,superfamily_Val/Leu/Ile-tRNA-synth_edit,tigrfam_Leu-tRNA-synth_Ia_arc/euk	pfam_aa-tRNA-synth_Ia,pfam_Methionyl/Leucyl_tRNA_Synth,pfam_V/L/I-tRNA-synth_anticodon-bd,pfam_Cys-tRNA/MSH_ligase,superfamily_tRNAsynth_1a_anticodon-bd,superfamily_Val/Leu/Ile-tRNA-synth_edit,tigrfam_Leu-tRNA-synth_Ia_arc/euk	-	no_errors	LARS	HGNC	ENSG00000133706				64	0	0	52	3	5.45455
POU4F3	0	genome.wustl.edu	37	5	145719218	145719218	+	Silent	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	145719218	145719218	C	A	SNP	POU4F3	ENST00000230732	human	ensembl	74_37	+1	known	silent	c.228	p.P76	1.000	NULL	pfam_POU_specific,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_POU_specific,prints_POU	-	no_errors	POU4F3	HGNC	ENSG00000091010				82	0	0	74	5	6.32911
TCERG1	0	genome.wustl.edu	37	5	145888807	145888807	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	145888807	145888807	A	G	SNP	TCERG1	ENST00000296702	human	ensembl	74_37	+1	known	missense	c.3094	p.R1032G	1.000	pfam_FF_domain,smart_FF_domain	pfam_FF_domain,pfam_WW_dom,superfamily_FF_domain,superfamily_WW_dom,smart_WW_dom,smart_FF_domain,pfscan_WW_dom	-	no_errors	TCERG1	HGNC	ENSG00000113649				127	0	0	78	5	6.0241
STK32A	0	genome.wustl.edu	37	5	146722576	146722576	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	146722576	146722576	A	G	SNP	STK32A	ENST00000397936	human	ensembl	74_37	+1	known	missense	c.442	p.K148E	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	STK32A	HGNC	ENSG00000169302				211	0	0	150	15	9.09091
DPYSL3	0	genome.wustl.edu	37	5	146788299	146788299	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	146788299	146788299	G	T	SNP	DPYSL3	ENST00000398514	human	ensembl	74_37	-1	known	missense	c.682	p.P228T	1.000	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	-	no_errors	DPYSL3	HGNC	ENSG00000113657				139	0	0	117	8	6.4
DPYSL3	0	genome.wustl.edu	37	5	146795370	146795370	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	146795370	146795370	G	A	SNP	DPYSL3	ENST00000398514	human	ensembl	74_37	-1	known	missense	c.380	p.A127V	1.000	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	-	no_errors	DPYSL3	HGNC	ENSG00000113657				162	1	0.613497	127	13	9.28571
FAM105B	0	genome.wustl.edu	37	5	14681660	14681660	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	14681660	14681660	G	A	SNP	FAM105B	ENST00000284274	human	ensembl	74_37	+1	known	missense	c.412	p.A138T	1.000	prints_FAM105	prints_FAM105,prints_FAM105B,prints_FAM105A	-	no_errors	FAM105B	HGNC	ENSG00000154124				91	0	0	102	12	10.5263
SPINK1	0	genome.wustl.edu	37	5	147207595	147207595	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	147207595	147207595	A	G	SNP	SPINK1	ENST00000296695	human	ensembl	74_37	-1	known	missense	c.184	p.F62L	0.000	pfam_Kazal_dom,smart_Kazal_dom	pfam_Kazal_dom,smart_Kazal_dom,prints_Prot_inh_Kazal-m	-	no_errors	SPINK1	HGNC	ENSG00000164266				56	0	0	27	3	10
SPINK14	0	genome.wustl.edu	37	5	147553843	147553843	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	147553843	147553843	C	T	SNP	SPINK14	ENST00000356972	human	ensembl	74_37	+1	known	missense	c.158	p.T53M	0.004	smart_Kazal_dom	pfam_Kazal_dom,smart_Kazal_dom	-	no_errors	SPINK14	HGNC	ENSG00000196800				102	0	0	90	10	10
ADRB2	0	genome.wustl.edu	37	5	148206582	148206582	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	148206582	148206582	G	A	SNP	ADRB2	ENST00000305988	human	ensembl	74_37	+1	known	missense	c.188	p.R63H	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_ADRB2_rcpt,prints_GPCR_Rhodpsn,prints_ADR_fam	-	no_errors	ADRB2	HGNC	ENSG00000169252				64	0	0	48	8	14.2857
ADRB2	0	genome.wustl.edu	37	5	148207139	148207139	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	148207139	148207139	G	A	SNP	ADRB2	ENST00000305988	human	ensembl	74_37	+1	known	missense	c.745	p.E249K	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_ADRB2_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_ADRB2_rcpt,prints_GPCR_Rhodpsn,prints_ADR_fam	-	no_errors	ADRB2	HGNC	ENSG00000169252				73	0	0	69	6	8
SH3TC2	0	genome.wustl.edu	37	5	148420185	148420185	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	148420185	148420185	T	C	SNP	SH3TC2	ENST00000515425	human	ensembl	74_37	-1	known	missense	c.787	p.T263A	1.000	superfamily_SH3_domain	pfam_SH3_domain,pfam_TPR_1,superfamily_SH3_domain,smart_SH3_domain,smart_TPR_repeat,pfscan_SH3_domain	-	no_errors	SH3TC2	HGNC	ENSG00000169247				107	0	0	80	8	9.09091
AFAP1L1	0	genome.wustl.edu	37	5	148687000	148687000	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	148687000	148687000	T	A	SNP	AFAP1L1	ENST00000296721	human	ensembl	74_37	+1	known	missense	c.571	p.S191T	1.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	AFAP1L1	HGNC	ENSG00000157510				96	0	0	88	9	9.27835
ANKH	0	genome.wustl.edu	37	5	14871519	14871519	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	14871519	14871519	A	G	SNP	ANKH	ENST00000284268	human	ensembl	74_37	-1	known	missense	c.38	p.L13P	1.000	pfam_ANKH	pfam_ANKH	-	no_errors	ANKH	HGNC	ENSG00000154122				49	0	0	57	4	6.55738
IL17B	0	genome.wustl.edu	37	5	148754010	148754010	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	148754010	148754010	C	T	SNP	IL17B	ENST00000261796	human	ensembl	74_37	-1	known	silent	c.465	p.P155	0.104	pfam_IL-17_fam	pfam_IL-17_fam,prints_IL-17_chr	-	no_errors	IL17B	HGNC	ENSG00000127743				57	0	0	64	9	12.3288
ARHGEF37	0	genome.wustl.edu	37	5	149001301	149001301	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	149001301	149001301	A	T	SNP	ARHGEF37	ENST00000333677	human	ensembl	74_37	+1	known	missense	c.1011	p.Q337H	0.990	pfam_BAR_dom,smart_BAR_dom,pfscan_BAR_dom	pfam_DH-domain,pfam_BAR_dom,pfam_SH3_2,pfam_SH3_domain,superfamily_DH-domain,superfamily_SH3_domain,smart_DH-domain,smart_BAR_dom,smart_SH3_domain,pfscan_BAR_dom,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ARHGEF37	HGNC	ENSG00000183111				95	0	0	96	11	10.2804
PPARGC1B	0	genome.wustl.edu	37	5	149212461	149212461	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	149212461	149212461	C	T	SNP	PPARGC1B	ENST00000309241	human	ensembl	74_37	+1	known	silent	c.825	p.P275	0.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	PPARGC1B	HGNC	ENSG00000155846				77	0	0	92	5	5.15464
SLC26A2	0	genome.wustl.edu	37	5	149361002	149361002	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	149361002	149361002	G	A	SNP	SLC26A2	ENST00000286298	human	ensembl	74_37	+1	known	missense	c.1846	p.A616T	0.989	pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	-	no_errors	SLC26A2	HGNC	ENSG00000155850				135	0	0	76	29	27.619
CSF1R	0	genome.wustl.edu	37	5	149456864	149456864	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	149456864	149456864	G	A	SNP	CSF1R	ENST00000286301	human	ensembl	74_37	-1	known	silent	c.864	p.S288	0.000	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,smart_Ig_sub,pfscan_Ig-like_dom	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	CSF1R	HGNC	ENSG00000182578				88	0	0	83	6	6.74157
SLC6A7	0	genome.wustl.edu	37	5	149583563	149583563	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	149583563	149583563	G	A	SNP	SLC6A7	ENST00000230671	human	ensembl	74_37	+1	known	missense	c.1294	p.V432M	0.890	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	-	no_errors	SLC6A7	HGNC	ENSG00000011083				32	0	0	27	4	12.9032
ARSI	0	genome.wustl.edu	37	5	149677666	149677666	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	149677666	149677666	A	C	SNP	ARSI	ENST00000328668	human	ensembl	74_37	-1	known	missense	c.821	p.V274G	1.000	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	-	no_errors	ARSI	HGNC	ENSG00000183876				30	0	0	34	5	12.8205
TCOF1	0	genome.wustl.edu	37	5	149755412	149755412	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	149755412	149755412	C	T	SNP	TCOF1	ENST00000451292	human	ensembl	74_37	+1	known	silent	c.1833	p.S611	0.406	pfam_TCS_treacle,prints_Treacle-like_TCS	pfam_TCS_treacle,smart_LisH_dimerisation,pfscan_LisH_dimerisation,prints_Treacle-like_TCS	-	no_errors	TCOF1	HGNC	ENSG00000070814				60	0	0	64	7	9.85915
SYNPO	0	genome.wustl.edu	37	5	150027979	150027979	+	Silent	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	150027979	150027979	C	A	SNP	SYNPO	ENST00000394243	human	ensembl	74_37	+1	known	silent	c.874	p.R292	0.829	NULL	NULL	-	no_errors	SYNPO	HGNC	ENSG00000171992				86	0	0	98	8	7.54717
DCTN4	0	genome.wustl.edu	37	5	150138455	150138455	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	150138455	150138455	C	T	SNP	DCTN4	ENST00000446090	human	ensembl	74_37	-1	known	missense	c.101	p.S34N	1.000	pfam_Dynactin_p62	pfam_Dynactin_p62	-	no_errors	DCTN4	HGNC	ENSG00000132912				111	0	0	133	20	13.0719
ZNF300	0	genome.wustl.edu	37	5	150275987	150275987	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	150275987	150275987	C	T	SNP	ZNF300	ENST00000446148	human	ensembl	74_37	-1	known	missense	c.862	p.V288I	0.021	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF300	HGNC	ENSG00000145908				177	0	0	130	13	9.09091
SLC36A2	0	genome.wustl.edu	37	5	150704980	150704980	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	150704980	150704980	G	A	SNP	SLC36A2	ENST00000335244	human	ensembl	74_37	-1	known	missense	c.877	p.R293C	0.873	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC36A2	HGNC	ENSG00000186335				87	0	0	56	5	8.19672
SLC36A1	0	genome.wustl.edu	37	5	150838460	150838460	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	150838460	150838460	G	A	SNP	SLC36A1	ENST00000243389	human	ensembl	74_37	+1	known	missense	c.107	p.G36D	0.647	NULL	pfam_AA_transpt_TM	-	no_errors	SLC36A1	HGNC	ENSG00000123643				83	0	0	64	5	7.24638
FAT2	0	genome.wustl.edu	37	5	150887158	150887158	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	150887158	150887158	G	A	SNP	FAT2	ENST00000261800	human	ensembl	74_37	-1	known	missense	c.12074	p.A4025V	0.009	NULL	pfam_Cadherin,pfam_Laminin_G,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT2	HGNC	ENSG00000086570				37	0	0	34	5	12.8205
FAT2	0	genome.wustl.edu	37	5	150901461	150901461	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	150901461	150901461	T	C	SNP	FAT2	ENST00000261800	human	ensembl	74_37	-1	known	missense	c.10693	p.T3565A	0.998	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT2	HGNC	ENSG00000086570				58	0	0	46	5	9.80392
FAT2	0	genome.wustl.edu	37	5	150922517	150922517	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	150922517	150922517	T	C	SNP	FAT2	ENST00000261800	human	ensembl	74_37	-1	known	missense	c.8171	p.Y2724C	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT2	HGNC	ENSG00000086570				111	0	0	94	9	8.73786
FAT2	0	genome.wustl.edu	37	5	150945761	150945761	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	150945761	150945761	A	G	SNP	FAT2	ENST00000261800	human	ensembl	74_37	-1	known	missense	c.2732	p.L911P	0.241	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT2	HGNC	ENSG00000086570				48	0	0	44	3	6.38298
G3BP1	0	genome.wustl.edu	37	5	151176816	151176816	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	151176816	151176816	C	T	SNP	G3BP1	ENST00000356245	human	ensembl	74_37	+1	known	missense	c.568	p.P190S	1.000	NULL	pfam_NTF2,pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,pfscan_Nuclear_transport_factor_2_euk	-	no_errors	G3BP1	HGNC	ENSG00000145907				55	0	0	40	3	6.97674
GLRA1	0	genome.wustl.edu	37	5	151208616	151208616	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	151208616	151208616	T	C	SNP	GLRA1	ENST00000455880	human	ensembl	74_37	-1	known	missense	c.925	p.K309E	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,prints_Glycine_rcpt_A,prints_Glycine_rcpt_A1,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GLRA1	HGNC	ENSG00000145888				105	0	0	116	11	8.66142
GRIA1	0	genome.wustl.edu	37	5	153174264	153174264	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	153174264	153174264	G	A	SNP	GRIA1	ENST00000518783	human	ensembl	74_37	+1	known	missense	c.2384	p.G795D	1.000	pfam_Iontro_glu_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIA1	HGNC	ENSG00000155511				79	0	0	58	5	7.93651
FAM114A2	0	genome.wustl.edu	37	5	153372657	153372657	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	153372657	153372657	G	C	SNP	FAM114A2	ENST00000351797	human	ensembl	74_37	-1	known	missense	c.1397	p.A466G	1.000	NULL	pfam_DUF719	-	no_errors	FAM114A2	HGNC	ENSG00000055147				79	0	0	61	4	6.15385
GALNT10	0	genome.wustl.edu	37	5	153792469	153792469	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	153792469	153792469	G	A	SNP	GALNT10	ENST00000297107	human	ensembl	74_37	+1	known	silent	c.1407	p.G469	0.022	pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT10	HGNC	ENSG00000164574				91	0	0	83	9	9.78261
SAP30L	0	genome.wustl.edu	37	5	153830686	153830686	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	153830686	153830686	T	A	SNP	SAP30L	ENST00000297109	human	ensembl	74_37	+1	known	missense	c.237	p.N79K	0.996	NULL	NULL	-	no_errors	SAP30L	HGNC	ENSG00000164576				70	0	0	59	5	7.8125
LARP1	0	genome.wustl.edu	37	5	154169932	154169932	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	154169932	154169932	C	T	SNP	LARP1	ENST00000336314	human	ensembl	74_37	+1	known	missense	c.253	p.R85C	0.865	NULL	pfam_Lupus_La_RNA-bd,smart_Lupus_La_RNA-bd,smart_DM15,pfscan_Lupus_La_RNA-bd	-	no_errors	LARP1	HGNC	ENSG00000155506				41	0	0	39	9	18.75
GEMIN5	0	genome.wustl.edu	37	5	154287325	154287325	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	154287325	154287325	G	A	SNP	GEMIN5	ENST00000285873	human	ensembl	74_37	-1	known	missense	c.2221	p.P741S	0.839	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	GEMIN5	HGNC	ENSG00000082516				256	0	0	180	13	6.73575
KIF4B	0	genome.wustl.edu	37	5	154393675	154393675	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	154393675	154393675	G	A	SNP	KIF4B	ENST00000435029	human	ensembl	74_37	+1	known	missense	c.256	p.A86T	1.000	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF4B	HGNC	ENSG00000226650				135	0	0	120	13	9.77444
HAVCR2	0	genome.wustl.edu	37	5	156514181	156514181	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	156514181	156514181	A	G	SNP	HAVCR2	ENST00000307851	human	ensembl	74_37	-1	known	missense	c.838	p.Y280H	0.000	NULL	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	HAVCR2	HGNC	ENSG00000135077				89	0	0	59	7	10.6061
HAVCR2	0	genome.wustl.edu	37	5	156533902	156533902	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	156533902	156533902	C	T	SNP	HAVCR2	ENST00000307851	human	ensembl	74_37	-1	known	missense	c.130	p.A44T	0.000	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	HAVCR2	HGNC	ENSG00000135077				174	0	0	135	33	19.6429
FAM71B	0	genome.wustl.edu	37	5	156589648	156589648	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	156589648	156589648	G	T	SNP	FAM71B	ENST00000302938	human	ensembl	74_37	-1	known	missense	c.1628	p.A543D	0.000	NULL	pfam_DUF3699	-	no_errors	FAM71B	HGNC	ENSG00000170613				203	0	0	160	16	9.09091
FAM71B	0	genome.wustl.edu	37	5	156590270	156590270	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	156590270	156590270	T	C	SNP	FAM71B	ENST00000302938	human	ensembl	74_37	-1	known	missense	c.1006	p.I336V	0.001	NULL	pfam_DUF3699	-	no_errors	FAM71B	HGNC	ENSG00000170613				164	0	0	124	28	18.4211
NIPAL4	0	genome.wustl.edu	37	5	156895765	156895765	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	156895765	156895765	G	T	SNP	NIPAL4	ENST00000311946	human	ensembl	74_37	+1	known	missense	c.556	p.A186S	0.999	pfam_Mg_trans_NIPA,pfam_DMT	pfam_Mg_trans_NIPA,pfam_DMT	-	no_errors	NIPAL4	HGNC	ENSG00000172548				151	0	0	117	14	10.687
NIPAL4	0	genome.wustl.edu	37	5	156899932	156899932	+	Silent	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	156899932	156899932	A	T	SNP	NIPAL4	ENST00000311946	human	ensembl	74_37	+1	known	silent	c.1365	p.P455	0.645	NULL	pfam_Mg_trans_NIPA,pfam_DMT	-	no_errors	NIPAL4	HGNC	ENSG00000172548				71	0	0	65	4	5.7971
ADAM19	0	genome.wustl.edu	37	5	156920054	156920054	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	156920054	156920054	C	T	SNP	ADAM19	ENST00000394020	human	ensembl	74_37	-1	known	missense	c.1841	p.R614Q	0.492	pfam_ADAM_Cys-rich,smart_ADAM_Cys-rich	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM19	HGNC	ENSG00000135074				73	0	0	55	17	23.6111
RNF145	0	genome.wustl.edu	37	5	158585587	158585587	+	RNA	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	158585587	158585587	C	T	SNP	RNF145	ENST00000518284	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RNF145	HGNC	ENSG00000145860				52	0	0	27	2	6.89655
RNF145	0	genome.wustl.edu	37	5	158596721	158596721	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	158596721	158596721	A	G	SNP	RNF145	ENST00000518802	human	ensembl	74_37	-1	known	missense	c.994	p.Y332H	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF145	HGNC	ENSG00000145860				43	0	0	44	3	6.38298
IL12B	0	genome.wustl.edu	37	5	158747327	158747327	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	158747327	158747327	G	A	SNP	IL12B	ENST00000231228	human	ensembl	74_37	-1	known	silent	c.684	p.F228	1.000	pirsf_IL-12_beta,superfamily_Fibronectin_type3	pirsf_IL-12_beta,pfam_IL-12_beta_cen-dom,superfamily_Fibronectin_type3,smart_Ig_sub2,prints_IL-12_beta,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	IL12B	HGNC	ENSG00000113302				103	0	0	78	7	8.23529
SLU7	0	genome.wustl.edu	37	5	159832114	159832114	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	159832114	159832114	C	T	SNP	SLU7	ENST00000297151	human	ensembl	74_37	-1	known	missense	c.1316	p.G439D	1.000	NULL	pfam_Slu7,superfamily_Znf_CCHC	-	no_errors	SLU7	HGNC	ENSG00000164609				135	0	0	81	9	10
GABRA1	0	genome.wustl.edu	37	5	161317996	161317996	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	161317996	161317996	A	T	SNP	GABRA1	ENST00000023897	human	ensembl	74_37	+1	known	missense	c.796	p.I266F	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_GABAA_rcpt,prints_GABBAa1_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRA1	HGNC	ENSG00000022355				133	0	0	111	6	5.12821
MYO10	0	genome.wustl.edu	37	5	16666836	16666836	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	16666836	16666836	T	C	SNP	MYO10	ENST00000513610	human	ensembl	74_37	-1	known	missense	c.6142	p.T2048A	0.998	NULL	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_Pleckstrin_homology,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,pfam_Ras-assoc,superfamily_P-loop_NTPase,superfamily_FERM_central,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Pleckstrin_homology,smart_MyTH4_dom,smart_Band_41_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_Pleckstrin_homology,prints_Myosin_head_motor_dom	-	no_errors	MYO10	HGNC	ENSG00000145555				21	0	0	19	2	9.52381
MYO10	0	genome.wustl.edu	37	5	16672884	16672884	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	16672884	16672884	C	T	SNP	MYO10	ENST00000513610	human	ensembl	74_37	-1	known	missense	c.5223	p.M1741I	1.000	pfam_Ras-assoc,smart_Band_41_domain,pfscan_FERM_domain	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_Pleckstrin_homology,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,pfam_Ras-assoc,superfamily_P-loop_NTPase,superfamily_FERM_central,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Pleckstrin_homology,smart_MyTH4_dom,smart_Band_41_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_Pleckstrin_homology,prints_Myosin_head_motor_dom	-	no_errors	MYO10	HGNC	ENSG00000145555				55	0	0	45	5	10
TENM2	0	genome.wustl.edu	37	5	167674382	167674382	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	167674382	167674382	C	T	SNP	TENM2	ENST00000518659	human	ensembl	74_37	+1	known	silent	c.6438	p.A2146	0.006	superfamily_ConA-like_lec_gl_sf	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,superfamily_Quino_amine_DH_bsu,superfamily_ConA-like_lec_gl_sf,superfamily_Cytokine_IL1-like,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	TENM2	HGNC	ENSG00000145934				100	0	0	79	14	15.0538
WWC1	0	genome.wustl.edu	37	5	167855037	167855037	+	Splice_Site	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	167855037	167855037	G	T	SNP	WWC1	ENST00000265293	human	ensembl	74_37	+1	known	splice_site	c.1811-1	e12-1	0.749	-	-	-	no_errors	WWC1	HGNC	ENSG00000113645				46	0	0	39	7	15.2174
FBLL1	0	genome.wustl.edu	37	5	167957293	167957293	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	167957293	167957293	G	A	SNP	FBLL1	ENST00000338333	human	ensembl	74_37	+1	putative	missense	c.784	p.A262T	1.000	pfam_Fibrillarin,pirsf_Fibrillarin,prints_Fibrillarin	pfam_Fibrillarin,pirsf_Fibrillarin,prints_Fibrillarin	-	no_errors	FBLL1	HGNC	ENSG00000188573				37	0	0	47	5	9.61538
SLIT3	0	genome.wustl.edu	37	5	168244401	168244401	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	168244401	168244401	G	A	SNP	SLIT3	ENST00000519560	human	ensembl	74_37	-1	known	nonsense	c.697	p.R233*	0.993	smart_Cys-rich_flank_reg_C	pfam_EG-like_dom,pfam_Leu-rich_rpt,pfam_Laminin_G,pfam_LRR-contain_N,pfam_Cys-rich_flank_reg_C,superfamily_ConA-like_lec_gl_sf,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Leu-rich_rpt_RNase_inh_sub-typ,smart_Cys-rich_flank_reg_C,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Laminin_G,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	SLIT3	HGNC	ENSG00000184347				47	0	0	38	13	25.4902
SPDL1	0	genome.wustl.edu	37	5	169018068	169018068	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	169018068	169018068	A	G	SNP	SPDL1	ENST00000265295	human	ensembl	74_37	+1	known	missense	c.176	p.K59R	1.000	NULL	NULL	-	no_errors	SPDL1	HGNC	ENSG00000040275				87	0	0	49	3	5.76923
DOCK2	0	genome.wustl.edu	37	5	169139186	169139186	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	169139186	169139186	A	G	SNP	DOCK2	ENST00000256935	human	ensembl	74_37	+1	known	missense	c.1618	p.T540A	1.000	NULL	pfam_DOCK_C,pfam_SH3_2,superfamily_SH3_domain,superfamily_Cyt_c-like_dom,superfamily_ARM-type_fold,superfamily_Ferritin-like_SF,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK2	HGNC	ENSG00000134516				88	0	0	54	7	11.4754
DOCK2	0	genome.wustl.edu	37	5	169188543	169188543	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	169188543	169188543	A	G	SNP	DOCK2	ENST00000256935	human	ensembl	74_37	+1	known	missense	c.2468	p.Y823C	1.000	superfamily_ARM-type_fold	pfam_DOCK_C,pfam_SH3_2,superfamily_SH3_domain,superfamily_Cyt_c-like_dom,superfamily_ARM-type_fold,superfamily_Ferritin-like_SF,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK2	HGNC	ENSG00000134516				200	0	0	138	41	22.905
DOCK2	0	genome.wustl.edu	37	5	169445980	169445980	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	169445980	169445980	C	T	SNP	DOCK2	ENST00000433448	human	ensembl	74_37	+1	known	missense	c.118	p.L40F	1.000	NULL	NULL	-	no_errors	DOCK2	HGNC	ENSG00000134516				265	0	0	209	51	19.6154
LCP2	0	genome.wustl.edu	37	5	169675795	169675795	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	169675795	169675795	T	A	SNP	LCP2	ENST00000046794	human	ensembl	74_37	-1	known	missense	c.1508	p.D503V	1.000	pfam_SH2,smart_SH2,pfscan_SH2	pfam_SH2,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,smart_SH2,pfscan_SH2	-	no_errors	LCP2	HGNC	ENSG00000043462				205	0	0	166	14	7.77778
KCNIP1	0	genome.wustl.edu	37	5	170149719	170149719	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	170149719	170149719	C	G	SNP	KCNIP1	ENST00000411494	human	ensembl	74_37	+1	known	missense	c.363	p.D121E	1.000	smart_EF_hand_dom,pfscan_EF_hand_dom,prints_Recoverin	pfam_EF_hand_dom,pfam_SPARC/Testican_Ca-bd-dom,smart_EF_hand_dom,pfscan_EF_hand_dom,prints_Recoverin	-	no_errors	KCNIP1	HGNC	ENSG00000182132				63	0	0	42	6	12.5
RANBP17	0	genome.wustl.edu	37	5	170669797	170669797	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	170669797	170669797	T	A	SNP	RANBP17	ENST00000523189	human	ensembl	74_37	+1	known	missense	c.2749	p.S917T	0.999	superfamily_ARM-type_fold	pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N	-	no_errors	RANBP17	HGNC	ENSG00000204764				180	0	0	148	12	7.5
RANBP17	0	genome.wustl.edu	37	5	170725821	170725821	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	170725821	170725821	G	A	SNP	RANBP17	ENST00000523189	human	ensembl	74_37	+1	known	missense	c.3226	p.D1076N	0.944	NULL	pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N	-	no_errors	RANBP17	HGNC	ENSG00000204764				65	0	0	51	5	8.92857
NPM1	0	genome.wustl.edu	37	5	170818392	170818392	+	Silent	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	170818392	170818392	A	T	SNP	NPM1	ENST00000296930	human	ensembl	74_37	+1	known	silent	c.222	p.V74	0.997	superfamily_Nucleoplasmin_core_dom	superfamily_Nucleoplasmin_core_dom	-	no_errors	NPM1	HGNC	ENSG00000181163				141	0	0	111	9	7.5
FBXW11	0	genome.wustl.edu	37	5	171303497	171303497	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	171303497	171303497	A	T	SNP	FBXW11	ENST00000265094	human	ensembl	74_37	-1	known	missense	c.950	p.I317N	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_Beta-TrCP_D,pfam_F-box_dom,superfamily_WD40_repeat_dom,superfamily_F-box_dom,smart_F-box_dom,smart_WD40_repeat,pfscan_F-box_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	FBXW11	HGNC	ENSG00000072803				44	0	0	35	7	16.6667
RPL26L1	0	genome.wustl.edu	37	5	172386991	172386991	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	172386991	172386991	C	T	SNP	RPL26L1	ENST00000265100	human	ensembl	74_37	+1	known	missense	c.115	p.R39W	1.000	superfamily_Translation_prot_SH3-like,tigrfam_Ribosomal_L26/L24P_euk/arc	pfam_KOW,superfamily_Translation_prot_SH3-like,smart_KOW,tigrfam_Ribosomal_L26/L24P_euk/arc	-	no_errors	RPL26L1	HGNC	ENSG00000037241				107	0	0	85	29	25.4386
NKX2-5	0	genome.wustl.edu	37	5	172660160	172660160	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	172660160	172660160	G	A	SNP	NKX2-5	ENST00000329198	human	ensembl	74_37	-1	known	silent	c.387	p.N129	0.972	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	NKX2-5	HGNC	ENSG00000183072				17	0	0	7	5	41.6667
STC2	0	genome.wustl.edu	37	5	172752893	172752893	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	172752893	172752893	T	C	SNP	STC2	ENST00000265087	human	ensembl	74_37	-1	known	missense	c.272	p.N91S	1.000	pfam_Stanniocalcin	pfam_Stanniocalcin	-	no_errors	STC2	HGNC	ENSG00000113739				430	0	0	395	33	7.71028
HMP19	0	genome.wustl.edu	37	5	173531319	173531319	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	173531319	173531319	G	A	SNP	HMP19	ENST00000303177	human	ensembl	74_37	+1	known	missense	c.302	p.C101Y	1.000	pfam_Calcyon_neuron-sp,pirsf_Calcyon_neuron-sp	pfam_Calcyon_neuron-sp,pirsf_Calcyon_neuron-sp	-	no_errors	NSG2	Uniprot_gn	ENSG00000170091				78	0	0	58	24	29.2683
SFXN1	0	genome.wustl.edu	37	5	174937120	174937120	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	174937120	174937120	C	T	SNP	SFXN1	ENST00000321442	human	ensembl	74_37	+1	known	missense	c.344	p.P115L	1.000	pfam_Mtc,tigrfam_Mtc	pfam_Mtc,tigrfam_Mtc	-	no_errors	SFXN1	HGNC	ENSG00000164466				28	0	0	26	5	16.129
CDHR2	0	genome.wustl.edu	37	5	176004773	176004773	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	176004773	176004773	G	A	SNP	CDHR2	ENST00000261944	human	ensembl	74_37	+1	known	missense	c.1486	p.G496S	0.912	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDHR2	HGNC	ENSG00000074276				19	0	0	24	6	20
CDHR2	0	genome.wustl.edu	37	5	176005480	176005480	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	176005480	176005480	C	T	SNP	CDHR2	ENST00000261944	human	ensembl	74_37	+1	known	silent	c.1689	p.G563	0.455	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDHR2	HGNC	ENSG00000074276				31	0	0	25	5	16.6667
CDHR2	0	genome.wustl.edu	37	5	176011262	176011262	+	Splice_Site	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	176011262	176011262	T	C	SNP	CDHR2	ENST00000261944	human	ensembl	74_37	+1	known	splice_site	c.2128+2	e17+2	0.991	-	-	-	no_errors	CDHR2	HGNC	ENSG00000074276				58	0	0	58	5	7.93651
UNC5A	0	genome.wustl.edu	37	5	176295830	176295830	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	176295830	176295830	C	T	SNP	UNC5A	ENST00000329542	human	ensembl	74_37	+1	known	missense	c.586	p.P196S	1.000	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_ZU5,pfam_Death_domain,pfam_Ig_I-set,superfamily_DEATH-like_dom,superfamily_Thrombospondin_1_rpt,smart_Ig_sub,smart_Thrombospondin_1_rpt,smart_ZU5,smart_Death_domain,pfscan_Thrombospondin_1_rpt,pfscan_ZU5,pfscan_Ig-like_dom	-	no_errors	UNC5A	HGNC	ENSG00000113763				53	0	0	52	7	11.8644
UNC5A	0	genome.wustl.edu	37	5	176297464	176297464	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	176297464	176297464	G	A	SNP	UNC5A	ENST00000329542	human	ensembl	74_37	+1	known	missense	c.815	p.R272H	1.000	superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_ZU5,pfam_Death_domain,pfam_Ig_I-set,superfamily_DEATH-like_dom,superfamily_Thrombospondin_1_rpt,smart_Ig_sub,smart_Thrombospondin_1_rpt,smart_ZU5,smart_Death_domain,pfscan_Thrombospondin_1_rpt,pfscan_ZU5,pfscan_Ig-like_dom	-	no_errors	UNC5A	HGNC	ENSG00000113763				55	0	0	52	7	11.8644
UNC5A	0	genome.wustl.edu	37	5	176306343	176306343	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	176306343	176306343	G	T	SNP	UNC5A	ENST00000329542	human	ensembl	74_37	+1	known	missense	c.2217	p.E739D	1.000	NULL	pfam_ZU5,pfam_Death_domain,pfam_Ig_I-set,superfamily_DEATH-like_dom,superfamily_Thrombospondin_1_rpt,smart_Ig_sub,smart_Thrombospondin_1_rpt,smart_ZU5,smart_Death_domain,pfscan_Thrombospondin_1_rpt,pfscan_ZU5,pfscan_Ig-like_dom	-	no_errors	UNC5A	HGNC	ENSG00000113763				123	0	0	151	9	5.625
HK3	0	genome.wustl.edu	37	5	176314586	176314586	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	176314586	176314586	G	A	SNP	HK3	ENST00000292432	human	ensembl	74_37	-1	known	missense	c.1466	p.P489L	0.128	pfam_Hexokinase_N	pfam_Hexokinase_C,pfam_Hexokinase_N,prints_Hexokinase	-	no_errors	HK3	HGNC	ENSG00000160883				38	0	0	44	4	8.33333
NSD1	0	genome.wustl.edu	37	5	176562872	176562872	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	176562872	176562872	C	T	SNP	NSD1	ENST00000439151	human	ensembl	74_37	+1	known	silent	c.768	p.A256	1.000	NULL	pfam_PWWP_dom,pfam_SET_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_PWWP_dom,smart_Znf_PHD,smart_AWS,smart_SET_dom,smart_Post-SET_dom,pfscan_AWS,pfscan_PWWP_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger	-	no_errors	NSD1	HGNC	ENSG00000165671				51	0	0	45	4	8.16327
NSD1	0	genome.wustl.edu	37	5	176694615	176694615	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	176694615	176694615	C	T	SNP	NSD1	ENST00000439151	human	ensembl	74_37	+1	known	silent	c.5199	p.C1733	1.000	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	pfam_PWWP_dom,pfam_SET_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_PWWP_dom,smart_Znf_PHD,smart_AWS,smart_SET_dom,smart_Post-SET_dom,pfscan_AWS,pfscan_PWWP_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger	-	no_errors	NSD1	HGNC	ENSG00000165671				251	0	0	172	37	17.7033
NSD1	0	genome.wustl.edu	37	5	176707623	176707623	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	176707623	176707623	C	T	SNP	NSD1	ENST00000439151	human	ensembl	74_37	+1	known	missense	c.5680	p.R1894C	1.000	smart_AWS,pfscan_AWS	pfam_PWWP_dom,pfam_SET_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_PWWP_dom,smart_Znf_PHD,smart_AWS,smart_SET_dom,smart_Post-SET_dom,pfscan_AWS,pfscan_PWWP_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger	-	no_errors	NSD1	HGNC	ENSG00000165671				106	0	0	95	8	7.76699
MXD3	0	genome.wustl.edu	37	5	176734623	176734623	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	176734623	176734623	T	C	SNP	MXD3	ENST00000439742	human	ensembl	74_37	-1	known	missense	c.587	p.H196R	1.000	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	MXD3	HGNC	ENSG00000213347				43	0	0	49	4	7.54717
SLC34A1	0	genome.wustl.edu	37	5	176814840	176814840	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	176814840	176814840	C	T	SNP	SLC34A1	ENST00000324417	human	ensembl	74_37	+1	known	silent	c.610	p.L204	1.000	pfam_Na/Pi_transpt,tigrfam_Na/Pi_transpt	pfam_Na/Pi_transpt,tigrfam_Na/Pi_transpt	-	no_errors	SLC34A1	HGNC	ENSG00000131183				51	0	0	57	3	5
DDX41	0	genome.wustl.edu	37	5	176943356	176943356	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	176943356	176943356	G	A	SNP	DDX41	ENST00000507955	human	ensembl	74_37	-1	known	silent	c.231	p.I77	0.999	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Znf_CCHC,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX41	HGNC	ENSG00000183258				105	0	0	110	9	7.56303
TMED9	0	genome.wustl.edu	37	5	177022356	177022356	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	177022356	177022356	C	T	SNP	TMED9	ENST00000332598	human	ensembl	74_37	+1	known	missense	c.647	p.A216V	1.000	pfam_GOLD	pfam_GOLD,pfscan_GOLD	-	no_errors	TMED9	HGNC	ENSG00000184840				78	0	0	90	6	6.25
PROP1	0	genome.wustl.edu	37	5	177419899	177419899	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	177419899	177419899	C	T	SNP	PROP1	ENST00000308304	human	ensembl	74_37	-1	known	silent	c.492	p.V164	0.003	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_HTH_motif	-	no_errors	PROP1	HGNC	ENSG00000175325				28	0	0	24	5	17.2414
HNRNPAB	0	genome.wustl.edu	37	5	177637611	177637611	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	177637611	177637611	A	T	SNP	HNRNPAB	ENST00000358344	human	ensembl	74_37	+1	known	missense	c.986	p.Y329F	1.000	NULL	pfam_RRM_dom,pfam_CARG-binding_factor_N,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HNRNPAB	HGNC	ENSG00000197451				30	0	0	22	3	12
COL23A1	0	genome.wustl.edu	37	5	177682016	177682016	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	177682016	177682016	G	A	SNP	COL23A1	ENST00000407622	human	ensembl	74_37	-1	known	missense	c.889	p.P297S	1.000	NULL	pfam_Collagen	-	no_errors	COL23A1	HGNC	ENSG00000050767				160	0	0	156	9	5.45455
ZNF354B	0	genome.wustl.edu	37	5	178293336	178293336	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	178293336	178293336	T	C	SNP	ZNF354B	ENST00000322434	human	ensembl	74_37	+1	known	missense	c.125	p.V42A	1.000	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF354B	HGNC	ENSG00000178338				125	0	0	77	20	20.6186
ZFP2	0	genome.wustl.edu	37	5	178359389	178359389	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	178359389	178359389	T	C	SNP	ZFP2	ENST00000361362	human	ensembl	74_37	+1	known	missense	c.1075	p.C359R	0.986	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFP2	HGNC	ENSG00000198939				94	0	0	55	4	6.77966
GRM6	0	genome.wustl.edu	37	5	178413301	178413301	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	178413301	178413301	C	T	SNP	GRM6	ENST00000231188	human	ensembl	74_37	-1	known	missense	c.1954	p.A652T	0.011	pfam_GPCR_3_C,pfscan_GPCR_3_C	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_6,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_4	-	no_errors	GRM6	HGNC	ENSG00000113262				33	0	0	27	11	28.9474
ADAMTS2	0	genome.wustl.edu	37	5	178699971	178699971	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	178699971	178699971	A	G	SNP	ADAMTS2	ENST00000251582	human	ensembl	74_37	-1	known	missense	c.629	p.V210A	1.000	pfam_Peptidase_M12B_N	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Pept_M12B_ADAM-TS2,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS2	HGNC	ENSG00000087116				72	0	0	73	10	12.0482
MAML1	0	genome.wustl.edu	37	5	179201856	179201856	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	179201856	179201856	A	G	SNP	MAML1	ENST00000292599	human	ensembl	74_37	+1	known	missense	c.3029	p.D1010G	0.999	NULL	pfam_Neuroggenic_mastermind-like_N	-	no_errors	MAML1	HGNC	ENSG00000161021				137	0	0	133	12	8.27586
SQSTM1	0	genome.wustl.edu	37	5	179251252	179251252	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	179251252	179251252	G	A	SNP	SQSTM1	ENST00000389805	human	ensembl	74_37	+1	known	missense	c.602	p.G201D	1.000	NULL	pfam_Znf_ZZ,pfam_OPR_PB1,superfamily_UBA-like,smart_OPR_PB1,smart_Znf_ZZ,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_ZZ	-	no_errors	SQSTM1	HGNC	ENSG00000161011				72	0	0	80	10	11.1111
TBC1D9B	0	genome.wustl.edu	37	5	179302057	179302057	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	179302057	179302057	G	A	SNP	TBC1D9B	ENST00000356834	human	ensembl	74_37	-1	known	silent	c.2031	p.S677	0.973	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,pfam_GRAM,superfamily_Rab-GTPase-TBC_dom,smart_GRAM,smart_Rab-GTPase-TBC_dom,pfscan_EF_hand_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D9B	HGNC	ENSG00000197226				68	0	0	67	8	10.6667
RASGEF1C	0	genome.wustl.edu	37	5	179564616	179564616	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	179564616	179564616	G	A	SNP	RASGEF1C	ENST00000361132	human	ensembl	74_37	-1	known	nonsense	c.274	p.Q92*	1.000	pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,pfscan_Ras-like_Gua-exchang_fac_N	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGEF1C	HGNC	ENSG00000146090				21	0	0	12	4	25
RASGEF1C	0	genome.wustl.edu	37	5	179565047	179565047	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	179565047	179565047	T	C	SNP	RASGEF1C	ENST00000361132	human	ensembl	74_37	-1	known	silent	c.6	p.P2	1.000	NULL	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGEF1C	HGNC	ENSG00000146090				55	0	0	54	4	6.89655
MAPK9	0	genome.wustl.edu	37	5	179688787	179688787	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	179688787	179688787	C	T	SNP	MAPK9	ENST00000452135	human	ensembl	74_37	-1	known	missense	c.347	p.C116Y	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_MAPK_JNK	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_MAPK_JNK	-	no_errors	MAPK9	HGNC	ENSG00000050748				355	0	0	255	15	5.55556
MAPK9	0	genome.wustl.edu	37	5	179696371	179696371	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	179696371	179696371	A	T	SNP	MAPK9	ENST00000452135	human	ensembl	74_37	-1	known	missense	c.161	p.V54D	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_MAPK_JNK	-	no_errors	MAPK9	HGNC	ENSG00000050748				98	0	0	60	6	9.09091
FLT4	0	genome.wustl.edu	37	5	180049752	180049752	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	180049752	180049752	G	A	SNP	FLT4	ENST00000261937	human	ensembl	74_37	-1	known	missense	c.1636	p.L546F	1.000	smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_VEGFR3_rcpt	-	no_errors	FLT4	HGNC	ENSG00000037280				69	0	0	51	4	7.27273
OR2Y1	0	genome.wustl.edu	37	5	180166620	180166620	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	180166620	180166620	C	T	SNP	OR2Y1	ENST00000307832	human	ensembl	74_37	-1	known	missense	c.439	p.A147T	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2Y1	HGNC	ENSG00000174339				36	0	0	34	8	19.0476
MGAT1	0	genome.wustl.edu	37	5	180219453	180219453	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	180219453	180219453	C	T	SNP	MGAT1	ENST00000307826	human	ensembl	74_37	-1	known	silent	c.519	p.P173	0.456	pfam_Glyco_trans_13	pfam_Glyco_trans_13	-	no_errors	MGAT1	HGNC	ENSG00000131446				71	0	0	57	10	14.9254
OR2V2	0	genome.wustl.edu	37	5	180582008	180582008	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	180582008	180582008	T	C	SNP	OR2V2	ENST00000328275	human	ensembl	74_37	+1	known	silent	c.66	p.S22	0.000	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2V2	HGNC	ENSG00000182613				217	0	0	211	19	8.26087
TRIM52	0	genome.wustl.edu	37	5	180687728	180687728	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	180687728	180687728	G	A	SNP	TRIM52	ENST00000327767	human	ensembl	74_37	-1	known	silent	c.87	p.D29	0.254	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM52	HGNC	ENSG00000183718				43	0	0	46	3	6.12245
LRRC14B	0	genome.wustl.edu	37	5	192330	192330	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	192330	192330	C	T	SNP	LRRC14B	ENST00000328278	human	ensembl	74_37	+1	novel	missense	c.677	p.A226V	0.036	NULL	NULL	-	no_errors	LRRC14B	HGNC	ENSG00000185028				11	0	0	7	3	30
LRRC14B	0	genome.wustl.edu	37	5	195116	195116	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	195116	195116	A	T	SNP	LRRC14B	ENST00000328278	human	ensembl	74_37	+1	novel	missense	c.1193	p.N398I	1.000	NULL	NULL	-	no_errors	LRRC14B	HGNC	ENSG00000185028				34	0	0	40	5	11.1111
CCDC127	0	genome.wustl.edu	37	5	205460	205460	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	205460	205460	G	A	SNP	CCDC127	ENST00000296824	human	ensembl	74_37	-1	known	silent	c.735	p.V245	0.000	NULL	NULL	-	no_errors	CCDC127	HGNC	ENSG00000164366				133	0	0	122	7	5.42636
CDH12	0	genome.wustl.edu	37	5	21975268	21975268	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	21975268	21975268	A	T	SNP	CDH12	ENST00000382254	human	ensembl	74_37	-1	known	missense	c.458	p.I153N	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH12	HGNC	ENSG00000154162				132	0	0	79	28	26.1682
PRDM9	0	genome.wustl.edu	37	5	23522467	23522467	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	23522467	23522467	G	C	SNP	PRDM9	ENST00000296682	human	ensembl	74_37	+1	known	missense	c.563	p.G188A	0.000	pfam_SSXRD_motif	pfam_Znf_C2H2,pfam_SSXRD_motif,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	PRDM9	HGNC	ENSG00000164256				191	0	0	136	26	16.0494
SDHA	0	genome.wustl.edu	37	5	235410	235410	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	235410	235410	G	A	SNP	SDHA	ENST00000264932	human	ensembl	74_37	+1	known	missense	c.1216	p.V406M	0.999	pfam_FAD_bind_dom,superfamily_Succ_DH/fumarate_Rdtase_cat,tigrfam_Succ_DH_flav_su_fwd,tigrfam_Succ_Dhase_FrdA_Gneg	pfam_FAD_bind_dom,pfam_Fum_Rdtase/Succ_DH_flav-like_C,superfamily_Succ_DH/fumarate_Rdtase_cat,superfamily_Fum_Rdtase/Succ_DH_flav-like_C,tigrfam_Succ_DH_flav_su_fwd,tigrfam_Succ_Dhase_FrdA_Gneg	-	no_errors	SDHA	HGNC	ENSG00000073578				48	0	0	41	13	24.0741
CDH10	0	genome.wustl.edu	37	5	24488088	24488088	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	24488088	24488088	T	A	SNP	CDH10	ENST00000264463	human	ensembl	74_37	-1	known	missense	c.2051	p.K684I	1.000	pfam_Cadherin_cytoplasmic-dom	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDH10	HGNC	ENSG00000040731				90	0	0	90	14	13.4615
CDH9	0	genome.wustl.edu	37	5	26881477	26881477	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	26881477	26881477	T	C	SNP	CDH9	ENST00000231021	human	ensembl	74_37	-1	known	missense	c.2138	p.Q713R	1.000	pfam_Cadherin_cytoplasmic-dom	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH9	HGNC	ENSG00000113100				142	0	0	101	6	5.60748
CDH9	0	genome.wustl.edu	37	5	26886083	26886083	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	26886083	26886083	T	C	SNP	CDH9	ENST00000231021	human	ensembl	74_37	-1	known	missense	c.1622	p.D541G	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH9	HGNC	ENSG00000113100				222	0	0	147	13	8.125
CDH9	0	genome.wustl.edu	37	5	26906938	26906938	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	26906938	26906938	A	G	SNP	CDH9	ENST00000231021	human	ensembl	74_37	-1	known	missense	c.533	p.V178A	1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH9	HGNC	ENSG00000113100				62	0	0	55	4	6.77966
IRX2	0	genome.wustl.edu	37	5	2748698	2748698	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	2748698	2748698	G	A	SNP	IRX2	ENST00000302057	human	ensembl	74_37	-1	known	missense	c.1124	p.S375L	0.997	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,smart_Iroquois_homeo,pfscan_Homeobox_dom	-	no_errors	IRX2	HGNC	ENSG00000170561				49	0	0	45	6	11.7647
C5orf38	0	genome.wustl.edu	37	5	2752744	2752744	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	2752744	2752744	T	C	SNP	C5orf38	ENST00000334000	human	ensembl	74_37	+1	known	missense	c.209	p.L70S	0.001	NULL	NULL	-	no_errors	C5orf38	HGNC	ENSG00000186493				123	0	0	99	7	6.60377
PDCD6	0	genome.wustl.edu	37	5	306755	306755	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	306755	306755	A	G	SNP	PDCD6	ENST00000264933	human	ensembl	74_37	+1	known	missense	c.247	p.S83G	0.998	smart_EF_hand_dom	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	PDCD6	HGNC	ENSG00000249915				64	0	0	81	6	6.89655
CDH6	0	genome.wustl.edu	37	5	31305342	31305342	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	31305342	31305342	T	G	SNP	CDH6	ENST00000265071	human	ensembl	74_37	+1	known	missense	c.1061	p.V354G	0.016	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH6	HGNC	ENSG00000113361				129	0	0	109	11	9.16667
DROSHA	0	genome.wustl.edu	37	5	31526342	31526342	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	31526342	31526342	T	A	SNP	DROSHA	ENST00000344624	human	ensembl	74_37	-1	known	missense	c.698	p.H233L	1.000	NULL	pfam_RNase_III_dom,pfam_dsRNA-bd_dom,superfamily_RNase_III_dom,smart_RNase_III_dom,smart_dsRNA-bd_dom,pfscan_dsRNA-bd_dom,pfscan_RNase_III_dom	-	no_errors	DROSHA	HGNC	ENSG00000113360				92	0	0	83	11	11.7021
ZFR	0	genome.wustl.edu	37	5	32355933	32355933	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	32355933	32355933	T	C	SNP	ZFR	ENST00000265069	human	ensembl	74_37	-1	known	missense	c.3158	p.D1053G	1.000	NULL	pfam_DZF,pfam_Znf_C2H2_jaz,smart_Znf_U1,smart_Znf_C2H2-like,smart_DZF	-	no_errors	ZFR	HGNC	ENSG00000056097				189	0	0	155	15	8.82353
TARS	0	genome.wustl.edu	37	5	33455788	33455788	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	33455788	33455788	A	G	SNP	TARS	ENST00000265112	human	ensembl	74_37	+1	known	silent	c.672	p.E224	1.000	superfamily_Thr/Ala-tRNA-synth_IIc_edit,tigrfam_Thr-tRNA-ligase_IIa	pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Anticodon-bd,pfam_TGS,pfam_tRNA_SAD,superfamily_Thr/Ala-tRNA-synth_IIc_edit,superfamily_Anticodon-bd,superfamily_TGS-like,smart_tRNA_SAD,prints_Thr-tRNA-ligase_IIa,pfscan_aa-tRNA-synth_II,tigrfam_Thr-tRNA-ligase_IIa	-	no_errors	TARS	HGNC	ENSG00000113407				93	0	0	66	7	9.58904
RXFP3	0	genome.wustl.edu	37	5	33938202	33938202	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	33938202	33938202	G	A	SNP	RXFP3	ENST00000330120	human	ensembl	74_37	+1	known	missense	c.1357	p.V453M	1.000	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Formyl_pep_rcpt	-	no_errors	RXFP3	HGNC	ENSG00000182631				23	0	0	24	8	25
SLC45A2	0	genome.wustl.edu	37	5	33944918	33944918	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	33944918	33944918	G	A	SNP	SLC45A2	ENST00000296589	human	ensembl	74_37	-1	known	silent	c.1428	p.C476	0.919	superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC45A2	HGNC	ENSG00000164175				19	0	0	16	7	30.4348
RAI14	0	genome.wustl.edu	37	5	34814723	34814723	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	34814723	34814723	G	A	SNP	RAI14	ENST00000515799	human	ensembl	74_37	+1	known	silent	c.897	p.S299	0.999	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_t-SNARE,superfamily_UBA-like,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	RAI14	HGNC	ENSG00000039560				92	0	0	54	4	6.89655
SPEF2	0	genome.wustl.edu	37	5	35806994	35806994	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	35806994	35806994	T	C	SNP	SPEF2	ENST00000356031	human	ensembl	74_37	+1	known	silent	c.5196	p.S1732	0.001	pfam_HATC_dom_C	pfam_DUF1042,pfam_Adenylate_kin,pfam_HATC_dom_C,superfamily_P-loop_NTPase,superfamily_CH-domain,pfscan_CH-domain	-	no_errors	SPEF2	HGNC	ENSG00000152582				63	0	0	41	3	6.81818
IL7R	0	genome.wustl.edu	37	5	35860990	35860990	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	35860990	35860990	T	C	SNP	IL7R	ENST00000303115	human	ensembl	74_37	+1	known	missense	c.119	p.F40S	0.998	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3	-	no_errors	IL7R	HGNC	ENSG00000168685				148	0	0	134	15	10.0671
IRX1	0	genome.wustl.edu	37	5	3600783	3600783	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	3600783	3600783	C	T	SNP	IRX1	ENST00000302006	human	ensembl	74_37	+1	known	missense	c.1373	p.P458L	0.998	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,smart_Iroquois_homeo,pfscan_Homeobox_dom	-	no_errors	IRX1	HGNC	ENSG00000170549				53	0	0	35	15	30
SKP2	0	genome.wustl.edu	37	5	36153144	36153144	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	36153144	36153144	G	T	SNP	SKP2	ENST00000274255	human	ensembl	74_37	+1	known	missense	c.280	p.G94C	1.000	pfscan_F-box_dom	pfam_F-box_dom,superfamily_F-box_dom,smart_F-box_dom,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_F-box_dom	-	no_errors	SKP2	HGNC	ENSG00000145604				80	0	0	56	7	11.1111
SKP2	0	genome.wustl.edu	37	5	36182033	36182033	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	36182033	36182033	A	G	SNP	SKP2	ENST00000274255	human	ensembl	74_37	+1	known	missense	c.1175	p.H392R	0.999	NULL	pfam_F-box_dom,superfamily_F-box_dom,smart_F-box_dom,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_F-box_dom	-	no_errors	SKP2	HGNC	ENSG00000145604				129	0	0	98	15	13.2743
NIPBL	0	genome.wustl.edu	37	5	36961658	36961658	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	36961658	36961658	A	G	SNP	NIPBL	ENST00000282516	human	ensembl	74_37	+1	known	missense	c.431	p.Q144R	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	NIPBL	HGNC	ENSG00000164190				122	0	0	80	5	5.88235
NIPBL	0	genome.wustl.edu	37	5	37006671	37006671	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	37006671	37006671	C	A	SNP	NIPBL	ENST00000282516	human	ensembl	74_37	+1	known	nonsense	c.4068	p.Y1356*	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	NIPBL	HGNC	ENSG00000164190				27	0	0	22	5	18.5185
NIPBL	0	genome.wustl.edu	37	5	37020717	37020717	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	37020717	37020717	C	T	SNP	NIPBL	ENST00000282516	human	ensembl	74_37	+1	known	nonsense	c.5167	p.R1723*	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	NIPBL	HGNC	ENSG00000164190				111	0	0	80	21	20.7921
NIPBL	0	genome.wustl.edu	37	5	37020965	37020965	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	37020965	37020965	A	T	SNP	NIPBL	ENST00000282516	human	ensembl	74_37	+1	known	missense	c.5314	p.I1772F	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	NIPBL	HGNC	ENSG00000164190				246	0	0	158	20	11.236
C5orf42	0	genome.wustl.edu	37	5	37187584	37187584	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	37187584	37187584	A	G	SNP	C5orf42	ENST00000425232	human	ensembl	74_37	-1	known	missense	c.4012	p.F1338L	1.000	NULL	superfamily_Quino_amine_DH_bsu	-	no_errors	C5orf42	HGNC	ENSG00000197603				69	0	0	48	6	11.1111
NUP155	0	genome.wustl.edu	37	5	37328463	37328463	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	37328463	37328463	G	A	SNP	NUP155	ENST00000231498	human	ensembl	74_37	-1	known	missense	c.1873	p.H625Y	1.000	NULL	pfam_Nucleoporin_Nup133/Nup155_C,pfam_Nucleoporin_Nup133/Nup155_N,superfamily_WD40_repeat_dom	-	no_errors	NUP155	HGNC	ENSG00000113569				64	0	0	48	4	7.69231
WDR70	0	genome.wustl.edu	37	5	37605339	37605339	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	37605339	37605339	C	A	SNP	WDR70	ENST00000265107	human	ensembl	74_37	+1	known	missense	c.1091	p.T364N	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR70	HGNC	ENSG00000082068				63	0	0	36	3	7.69231
LIFR	0	genome.wustl.edu	37	5	38511961	38511961	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	38511961	38511961	A	G	SNP	LIFR	ENST00000263409	human	ensembl	74_37	-1	known	missense	c.667	p.Y223H	0.876	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	LIFR	HGNC	ENSG00000113594				82	0	0	40	5	11.1111
RICTOR	0	genome.wustl.edu	37	5	38947539	38947539	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	38947539	38947539	T	C	SNP	RICTOR	ENST00000296782	human	ensembl	74_37	-1	known	missense	c.4213	p.M1405V	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	RICTOR	HGNC	ENSG00000164327				55	0	0	26	11	29.7297
RICTOR	0	genome.wustl.edu	37	5	39002671	39002671	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	39002671	39002671	C	T	SNP	RICTOR	ENST00000296782	human	ensembl	74_37	-1	known	missense	c.358	p.V120M	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	RICTOR	HGNC	ENSG00000164327				249	0	0	165	9	5.17241
RICTOR	0	genome.wustl.edu	37	5	39002727	39002727	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	39002727	39002727	G	A	SNP	RICTOR	ENST00000296782	human	ensembl	74_37	-1	known	missense	c.302	p.A101V	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	RICTOR	HGNC	ENSG00000164327				241	0	0	166	17	9.28962
C9	0	genome.wustl.edu	37	5	39311418	39311418	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	39311418	39311418	C	T	SNP	C9	ENST00000263408	human	ensembl	74_37	-1	known	missense	c.932	p.R311H	0.711	pfam_MACPF,smart_MACPF	pfam_MACPF,pfam_LDrepeatLR_classA_rpt,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,superfamily_LDrepeatLR_classA_rpt,smart_Thrombospondin_1_rpt,smart_LDrepeatLR_classA_rpt,smart_MACPF,prints_MAC_perforin,pfscan_LDrepeatLR_classA_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	C9	HGNC	ENSG00000113600				101	0	0	66	15	18.5185
DAB2	0	genome.wustl.edu	37	5	39376984	39376984	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	39376984	39376984	A	C	SNP	DAB2	ENST00000320816	human	ensembl	74_37	-1	known	missense	c.1905	p.D635E	1.000	NULL	pfam_PTB/PI_dom,smart_PTB/PI_dom,pfscan_PTB/PI_dom	-	no_errors	DAB2	HGNC	ENSG00000153071				148	0	0	111	9	7.5
DAB2	0	genome.wustl.edu	37	5	39382948	39382948	+	Silent	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	39382948	39382948	G	T	SNP	DAB2	ENST00000320816	human	ensembl	74_37	-1	known	silent	c.1113	p.T371	0.800	NULL	pfam_PTB/PI_dom,smart_PTB/PI_dom,pfscan_PTB/PI_dom	-	no_errors	DAB2	HGNC	ENSG00000153071				73	0	0	77	8	9.41176
DAB2	0	genome.wustl.edu	37	5	39390565	39390565	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	39390565	39390565	G	A	SNP	DAB2	ENST00000320816	human	ensembl	74_37	-1	known	missense	c.443	p.A148V	1.000	pfam_PTB/PI_dom,smart_PTB/PI_dom,pfscan_PTB/PI_dom	pfam_PTB/PI_dom,smart_PTB/PI_dom,pfscan_PTB/PI_dom	-	no_errors	DAB2	HGNC	ENSG00000153071				124	1	0.8	80	16	16.6667
DAB2	0	genome.wustl.edu	37	5	39392490	39392490	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	39392490	39392490	T	C	SNP	DAB2	ENST00000320816	human	ensembl	74_37	-1	known	missense	c.307	p.K103E	1.000	pfam_PTB/PI_dom,smart_PTB/PI_dom,pfscan_PTB/PI_dom	pfam_PTB/PI_dom,smart_PTB/PI_dom,pfscan_PTB/PI_dom	-	no_errors	DAB2	HGNC	ENSG00000153071				102	0	0	78	8	9.30233
PTGER4	0	genome.wustl.edu	37	5	40691943	40691943	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	40691943	40691943	A	G	SNP	PTGER4	ENST00000302472	human	ensembl	74_37	+1	known	silent	c.930	p.P310	0.983	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Prost_EP4_rcpt,prints_Prostanoid_rcpt,prints_GPCR_Rhodpsn,prints_Prostglndn_DP_rcpt	-	no_errors	PTGER4	HGNC	ENSG00000171522				139	0	0	133	11	7.63889
PTGER4	0	genome.wustl.edu	37	5	40692107	40692107	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	40692107	40692107	A	G	SNP	PTGER4	ENST00000302472	human	ensembl	74_37	+1	known	missense	c.1094	p.D365G	0.908	prints_Prost_EP4_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Prost_EP4_rcpt,prints_Prostanoid_rcpt,prints_GPCR_Rhodpsn,prints_Prostglndn_DP_rcpt	-	no_errors	PTGER4	HGNC	ENSG00000171522				57	0	0	49	5	9.25926
PRKAA1	0	genome.wustl.edu	37	5	40777625	40777625	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	40777625	40777625	C	T	SNP	PRKAA1	ENST00000354209	human	ensembl	74_37	-1	known	missense	c.191	p.R64Q	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_KA1/Ssp2_C,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	PRKAA1	HGNC	ENSG00000132356				85	0	0	61	6	8.95522
CARD6	0	genome.wustl.edu	37	5	40853695	40853695	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	40853695	40853695	G	A	SNP	CARD6	ENST00000254691	human	ensembl	74_37	+1	known	missense	c.2261	p.G754D	0.010	NULL	pfam_CARD,superfamily_DEATH-like_dom,smart_CARD,pfscan_CARD	-	no_errors	CARD6	HGNC	ENSG00000132357				258	0	0	212	23	9.78723
C7	0	genome.wustl.edu	37	5	40955575	40955575	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	40955575	40955575	G	A	SNP	C7	ENST00000313164	human	ensembl	74_37	+1	known	missense	c.1180	p.D394N	0.995	pfam_MACPF,smart_MACPF	pfam_MACPF,pfam_Sushi_SCR_CCP,pfam_LDrepeatLR_classA_rpt,pfam_Thrombospondin_1_rpt,superfamily_Sushi_SCR_CCP,superfamily_Thrombospondin_1_rpt,superfamily_LDrepeatLR_classA_rpt,smart_Thrombospondin_1_rpt,smart_LDrepeatLR_classA_rpt,smart_MACPF,smart_Sushi_SCR_CCP,smart_FacI_MAC,pfscan_LDrepeatLR_classA_rpt,pfscan_Sushi_SCR_CCP,pfscan_Thrombospondin_1_rpt,prints_MAC_perforin	-	no_errors	C7	HGNC	ENSG00000112936				167	0	0	157	15	8.72093
OXCT1	0	genome.wustl.edu	37	5	41842866	41842866	+	Silent	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	41842866	41842866	A	T	SNP	OXCT1	ENST00000196371	human	ensembl	74_37	-1	known	silent	c.582	p.G194	0.823	pfam_CoA_trans_fam_I,smart_CoA_trans_fam_I,pirsf_3-oxoacid_CoA-transferase,tigrfam_3-oxoacid_CoA-transf_A	pfam_CoA_trans_fam_I,smart_CoA_trans_fam_I,pirsf_3-oxoacid_CoA-transferase,tigrfam_3-oxoacid_CoA-transf_B,tigrfam_3-oxoacid_CoA-transf_A	-	no_errors	OXCT1	HGNC	ENSG00000083720				242	0	0	230	20	8
OXCT1	0	genome.wustl.edu	37	5	41850186	41850186	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	41850186	41850186	C	T	SNP	OXCT1	ENST00000196371	human	ensembl	74_37	-1	known	silent	c.510	p.S170	0.371	pfam_CoA_trans_fam_I,smart_CoA_trans_fam_I,pirsf_3-oxoacid_CoA-transferase,tigrfam_3-oxoacid_CoA-transf_A	pfam_CoA_trans_fam_I,smart_CoA_trans_fam_I,pirsf_3-oxoacid_CoA-transferase,tigrfam_3-oxoacid_CoA-transf_B,tigrfam_3-oxoacid_CoA-transf_A	-	no_errors	OXCT1	HGNC	ENSG00000083720				103	0	0	91	22	19.469
OXCT1	0	genome.wustl.edu	37	5	41850248	41850248	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	41850248	41850248	C	T	SNP	OXCT1	ENST00000196371	human	ensembl	74_37	-1	known	missense	c.448	p.A150T	1.000	pfam_CoA_trans_fam_I,smart_CoA_trans_fam_I,pirsf_3-oxoacid_CoA-transferase,tigrfam_3-oxoacid_CoA-transf_A	pfam_CoA_trans_fam_I,smart_CoA_trans_fam_I,pirsf_3-oxoacid_CoA-transferase,tigrfam_3-oxoacid_CoA-transf_B,tigrfam_3-oxoacid_CoA-transf_A	-	no_errors	OXCT1	HGNC	ENSG00000083720				51	0	0	44	7	13.7255
PAIP1	0	genome.wustl.edu	37	5	43527569	43527569	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	43527569	43527569	T	C	SNP	PAIP1	ENST00000306846	human	ensembl	74_37	-1	known	missense	c.1349	p.Y450C	1.000	NULL	pfam_MIF4G-like_typ-3,pfam_Ataxin-2_C,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3	-	no_errors	PAIP1	HGNC	ENSG00000172239				78	0	0	48	7	12.7273
PAIP1	0	genome.wustl.edu	37	5	43556088	43556088	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	43556088	43556088	G	A	SNP	PAIP1	ENST00000306846	human	ensembl	74_37	-1	known	silent	c.279	p.P93	0.106	NULL	pfam_MIF4G-like_typ-3,pfam_Ataxin-2_C,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3	-	no_errors	PAIP1	HGNC	ENSG00000172239				210	0	0	179	17	8.67347
NNT	0	genome.wustl.edu	37	5	43624143	43624143	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	43624143	43624143	G	A	SNP	NNT	ENST00000264663	human	ensembl	74_37	+1	known	missense	c.697	p.V233I	1.000	pfam_AlaDH/PNT_NAD(H)-bd,tigrfam_NADP_transhyd_a	pfam_NADH_DH_b,pfam_AlaDH/PNT_NAD(H)-bd,pfam_AlaDH/PNT_N,tigrfam_NADP_transhyd_a	-	no_errors	NNT	HGNC	ENSG00000112992				278	0	0	196	20	9.25926
MRPS30	0	genome.wustl.edu	37	5	44809273	44809273	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	44809273	44809273	T	C	SNP	MRPS30	ENST00000507110	human	ensembl	74_37	+1	known	missense	c.209	p.V70A	0.989	pfam_Ribosomal_L37/S30	pfam_Ribosomal_L37/S30	-	no_errors	MRPS30	HGNC	ENSG00000112996				25	0	0	19	3	13.6364
HCN1	0	genome.wustl.edu	37	5	45262884	45262884	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	45262884	45262884	C	T	SNP	HCN1	ENST00000303230	human	ensembl	74_37	-1	known	silent	c.1812	p.K604	1.000	NULL	pfam_Ion_trans_N,pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG	-	no_errors	HCN1	HGNC	ENSG00000164588				84	0	0	54	8	12.9032
EXOC3	0	genome.wustl.edu	37	5	453871	453871	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	453871	453871	A	G	SNP	EXOC3	ENST00000315013	human	ensembl	74_37	+1	known	missense	c.751	p.I251V	0.367	pfam_Sec6	pfam_Sec6	-	no_errors	EXOC3	HGNC	ENSG00000180104				81	0	0	75	8	9.63855
HCN1	0	genome.wustl.edu	37	5	45695850	45695850	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	45695850	45695850	T	A	SNP	HCN1	ENST00000303230	human	ensembl	74_37	-1	known	missense	c.346	p.S116C	1.000	pfam_Ion_trans_N	pfam_Ion_trans_N,pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG	-	no_errors	HCN1	HGNC	ENSG00000164588				67	0	0	64	6	8.57143
ITGA1	0	genome.wustl.edu	37	5	52157298	52157298	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	52157298	52157298	C	T	SNP	ITGA1	ENST00000282588	human	ensembl	74_37	+1	known	missense	c.200	p.P67L	1.000	smart_Int_alpha_beta-p	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGA1	HGNC	ENSG00000213949				182	0	0	122	25	17.0068
ITGA2	0	genome.wustl.edu	37	5	52344509	52344509	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	52344509	52344509	A	G	SNP	ITGA2	ENST00000296585	human	ensembl	74_37	+1	known	missense	c.539	p.D180G	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGA2	HGNC	ENSG00000164171				229	0	0	188	11	5.52764
ITGA2	0	genome.wustl.edu	37	5	52353888	52353888	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	52353888	52353888	A	G	SNP	ITGA2	ENST00000296585	human	ensembl	74_37	+1	known	missense	c.1130	p.E377G	1.000	NULL	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGA2	HGNC	ENSG00000164171				80	0	0	55	4	6.77966
ITGA2	0	genome.wustl.edu	37	5	52367773	52367773	+	Silent	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	52367773	52367773	C	A	SNP	ITGA2	ENST00000296585	human	ensembl	74_37	+1	known	silent	c.2241	p.P747	0.981	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGA2	HGNC	ENSG00000164171				75	0	0	52	6	10.3448
ADAMTS16	0	genome.wustl.edu	37	5	5239880	5239880	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	5239880	5239880	C	T	SNP	ADAMTS16	ENST00000274181	human	ensembl	74_37	+1	known	missense	c.2365	p.R789C	0.367	pfam_ADAM_spacer1	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS16	HGNC	ENSG00000145536				108	1	0.917431	91	30	24.7934
FST	0	genome.wustl.edu	37	5	52780953	52780953	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	52780953	52780953	T	A	SNP	FST	ENST00000256759	human	ensembl	74_37	+1	known	missense	c.848	p.V283D	1.000	pfam_Kazal_dom,smart_Kazal_dom	pfam_Kazal_dom,pfam_Follistatin/Osteonectin_EGF,superfamily_TB_dom,smart_Fol_N,smart_Kazal_dom	-	no_errors	FST	HGNC	ENSG00000134363				129	0	0	101	7	6.48148
SKIV2L2	0	genome.wustl.edu	37	5	54603888	54603888	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	54603888	54603888	A	T	SNP	SKIV2L2	ENST00000230640	human	ensembl	74_37	+1	known	missense	c.47	p.D16V	0.991	pirsf_RNA_helicase_ATP-dep_SK12/DOB1	pfam_DSH_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pirsf_RNA_helicase_ATP-dep_SK12/DOB1,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SKIV2L2	HGNC	ENSG00000039123				91	0	0	80	5	5.88235
SKIV2L2	0	genome.wustl.edu	37	5	54603965	54603965	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	54603965	54603965	G	A	SNP	SKIV2L2	ENST00000230640	human	ensembl	74_37	+1	known	missense	c.124	p.D42N	0.960	pirsf_RNA_helicase_ATP-dep_SK12/DOB1	pfam_DSH_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pirsf_RNA_helicase_ATP-dep_SK12/DOB1,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SKIV2L2	HGNC	ENSG00000039123				66	0	0	78	5	6.0241
KIAA0947	0	genome.wustl.edu	37	5	5463038	5463038	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	5463038	5463038	T	C	SNP	KIAA0947	ENST00000296564	human	ensembl	74_37	+1	known	silent	c.3591	p.S1197	0.554	NULL	superfamily_Vitellinogen_superhlx	-	no_errors	KIAA0947	HGNC	ENSG00000164151				22	0	0	18	3	14.2857
KIAA0947	0	genome.wustl.edu	37	5	5463287	5463287	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	5463287	5463287	A	T	SNP	KIAA0947	ENST00000296564	human	ensembl	74_37	+1	known	missense	c.3840	p.K1280N	0.000	NULL	superfamily_Vitellinogen_superhlx	-	no_errors	KIAA0947	HGNC	ENSG00000164151				30	0	0	27	6	18.1818
KIAA0947	0	genome.wustl.edu	37	5	5464075	5464075	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	5464075	5464075	A	G	SNP	KIAA0947	ENST00000296564	human	ensembl	74_37	+1	known	missense	c.4628	p.N1543S	0.035	NULL	superfamily_Vitellinogen_superhlx	-	no_errors	KIAA0947	HGNC	ENSG00000164151				56	0	0	39	4	9.30233
SKIV2L2	0	genome.wustl.edu	37	5	54696086	54696086	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	54696086	54696086	G	A	SNP	SKIV2L2	ENST00000230640	human	ensembl	74_37	+1	known	missense	c.2318	p.G773D	1.000	pirsf_RNA_helicase_ATP-dep_SK12/DOB1	pfam_DSH_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pirsf_RNA_helicase_ATP-dep_SK12/DOB1,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SKIV2L2	HGNC	ENSG00000039123				90	0	0	61	6	8.95522
IL31RA	0	genome.wustl.edu	37	5	55168208	55168208	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	55168208	55168208	T	A	SNP	IL31RA	ENST00000447346	human	ensembl	74_37	+1	known	missense	c.383	p.I128N	0.908	pfam_IL-6_rcpt_alpha-bd,superfamily_Fibronectin_type3,smart_Fibronectin_type3	pfam_Fibronectin_type3,pfam_IL-6_rcpt_alpha-bd,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL31RA	HGNC	ENSG00000164509				94	0	0	93	8	7.92079
IL6ST	0	genome.wustl.edu	37	5	55237466	55237466	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	55237466	55237466	A	G	SNP	IL6ST	ENST00000336909	human	ensembl	74_37	-1	known	missense	c.2201	p.M734T	1.000	NULL	pfam_IgC2-like_lig-bd,pfam_Fibronectin_type3,pfam_IL-6_rcpt_alpha-bd,pfam_Growth/epo_recpt_lig-bind,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL6ST	HGNC	ENSG00000134352				175	0	0	136	19	12.2581
ANKRD55	0	genome.wustl.edu	37	5	55407092	55407092	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	55407092	55407092	T	C	SNP	ANKRD55	ENST00000341048	human	ensembl	74_37	-1	known	missense	c.1483	p.K495E	0.920	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD55	HGNC	ENSG00000164512				224	0	0	169	21	11.0526
MIER3	0	genome.wustl.edu	37	5	56219147	56219147	+	Silent	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	56219147	56219147	G	T	SNP	MIER3	ENST00000381199	human	ensembl	74_37	-1	known	silent	c.1461	p.A487	0.663	NULL	pfam_ELM2_dom,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_ELM2_dom	-	no_errors	MIER3	HGNC	ENSG00000155545				120	1	0.826446	85	25	22.7273
MIER3	0	genome.wustl.edu	37	5	56231255	56231255	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	56231255	56231255	C	T	SNP	MIER3	ENST00000381199	human	ensembl	74_37	-1	known	missense	c.595	p.V199I	1.000	pfam_ELM2_dom,pfscan_ELM2_dom	pfam_ELM2_dom,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_ELM2_dom	-	no_errors	MIER3	HGNC	ENSG00000155545				143	0	0	96	26	21.3115
PLK2	0	genome.wustl.edu	37	5	57751521	57751521	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	57751521	57751521	A	G	SNP	PLK2	ENST00000274289	human	ensembl	74_37	-1	known	silent	c.1470	p.D490	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_POLO_box_duplicated_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_POLO_box_duplicated_dom,pfscan_Prot_kinase_dom	-	no_errors	PLK2	HGNC	ENSG00000145632				36	0	0	42	3	6.66667
DEPDC1B	0	genome.wustl.edu	37	5	59943345	59943345	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	59943345	59943345	T	C	SNP	DEPDC1B	ENST00000265036	human	ensembl	74_37	-1	known	silent	c.330	p.S110	1.000	NULL	pfam_DEP_dom,pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_DEP_dom,pfscan_DEP_dom,pfscan_RhoGAP_dom	-	no_errors	DEPDC1B	HGNC	ENSG00000035499				129	0	0	75	24	24.2424
ERCC8	0	genome.wustl.edu	37	5	60195478	60195478	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	60195478	60195478	T	C	SNP	ERCC8	ENST00000265038	human	ensembl	74_37	-1	known	missense	c.694	p.K232E	0.995	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	ERCC8	HGNC	ENSG00000049167				214	0	0	110	44	28.5714
HTR1A	0	genome.wustl.edu	37	5	63256873	63256873	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	63256873	63256873	C	T	SNP	HTR1A	ENST00000323865	human	ensembl	74_37	-1	known	missense	c.674	p.R225H	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_5HT1A_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_5HT1A_rcpt,prints_GPCR_Rhodpsn,prints_5HT_rcpt,prints_NPY_rcpt	-	no_errors	HTR1A	HGNC	ENSG00000178394				113	0	0	85	16	15.8416
HTR1A	0	genome.wustl.edu	37	5	63256991	63256991	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	63256991	63256991	C	T	SNP	HTR1A	ENST00000323865	human	ensembl	74_37	-1	known	missense	c.556	p.A186T	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_5HT1A_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_5HT1A_rcpt,prints_GPCR_Rhodpsn,prints_5HT_rcpt,prints_NPY_rcpt	-	no_errors	HTR1A	HGNC	ENSG00000178394				204	1	0.487805	179	17	8.67347
HTR1A	0	genome.wustl.edu	37	5	63257128	63257128	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	63257128	63257128	T	A	SNP	HTR1A	ENST00000323865	human	ensembl	74_37	-1	known	missense	c.419	p.D140V	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_5HT1A_rcpt,prints_GPCR_Rhodpsn,prints_5HT_rcpt,prints_NPY_rcpt	-	no_errors	HTR1A	HGNC	ENSG00000178394				49	0	0	50	4	7.40741
CEP72	0	genome.wustl.edu	37	5	640603	640603	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	640603	640603	G	A	SNP	CEP72	ENST00000264935	human	ensembl	74_37	+1	known	missense	c.1423	p.G475S	0.000	NULL	smart_Leu-rich_rpt_typical-subtyp,smart_U2A'_phosphoprotein32A_C	-	no_errors	CEP72	HGNC	ENSG00000112877				99	0	0	65	16	19.7531
PPWD1	0	genome.wustl.edu	37	5	64867672	64867672	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	64867672	64867672	T	C	SNP	PPWD1	ENST00000261308	human	ensembl	74_37	+1	known	silent	c.528	p.F176	1.000	superfamily_WD40_repeat_dom	pfam_Cyclophilin-like_PPIase_dom,pfam_WD40_repeat,superfamily_Cyclophilin-like_PPIase_dom,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	PPWD1	HGNC	ENSG00000113593				90	0	0	71	7	8.97436
NLN	0	genome.wustl.edu	37	5	65077166	65077166	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	65077166	65077166	A	G	SNP	NLN	ENST00000380985	human	ensembl	74_37	+1	known	missense	c.740	p.H247R	1.000	NULL	pfam_Pept_M3A_M3B	-	no_errors	NLN	HGNC	ENSG00000123213				97	0	0	67	6	8.21918
SREK1	0	genome.wustl.edu	37	5	65466667	65466667	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	65466667	65466667	G	A	SNP	SREK1	ENST00000334121	human	ensembl	74_37	+1	known	missense	c.1376	p.R459Q	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	SREK1	HGNC	ENSG00000153914				45	0	0	34	10	22.7273
MAST4	0	genome.wustl.edu	37	5	66459236	66459236	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	66459236	66459236	C	T	SNP	MAST4	ENST00000404260	human	ensembl	74_37	+1	known	missense	c.4238	p.A1413V	0.001	NULL	pfam_MA_Ser/Thr_Kinase_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,superfamily_Kinase-like_dom,superfamily_MAST_pre-PK_dom,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PDZ,pfscan_PDZ,pfscan_Prot_kinase_dom	-	no_errors	MAST4	HGNC	ENSG00000069020				33	0	0	22	6	21.4286
PIK3R1	0	genome.wustl.edu	37	5	67584567	67584567	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	67584567	67584567	C	T	SNP	PIK3R1	ENST00000320694	human	ensembl	74_37	+1	known	missense	c.4	p.H2Y	1.000	NULL	pfam_SH2,superfamily_Guanylate-bd_C,smart_SH2,pfscan_SH2,prints_PI3kinase_P85,prints_SH2	-	no_errors	PIK3R1	HGNC	ENSG00000145675				116	0	0	111	13	10.4839
PIK3R1	0	genome.wustl.edu	37	5	67593317	67593317	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	67593317	67593317	A	G	SNP	PIK3R1	ENST00000396611	human	ensembl	74_37	+1	known	missense	c.2087	p.Y696C	1.000	pfam_SH2,smart_SH2,pfscan_SH2,prints_PI3kinase_P85,prints_SH2	pfam_SH2,pfam_RhoGAP_dom,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Guanylate-bd_C,smart_SH3_domain,smart_RhoGAP_dom,smart_SH2,pfscan_SH2,pfscan_SH3_domain,pfscan_RhoGAP_dom,prints_PI3kinase_P85,prints_SH2	-	no_errors	PIK3R1	HGNC	ENSG00000145675				251	0	0	210	24	10.2564
BDP1	0	genome.wustl.edu	37	5	70782320	70782320	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	70782320	70782320	G	A	SNP	BDP1	ENST00000358731	human	ensembl	74_37	+1	known	missense	c.1079	p.R360H	0.998	NULL	superfamily_Homeodomain-like,smart_SANT/Myb	-	no_errors	BDP1	HGNC	ENSG00000145734				128	0	0	87	15	14.7059
BDP1	0	genome.wustl.edu	37	5	70809109	70809109	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	70809109	70809109	G	A	SNP	BDP1	ENST00000358731	human	ensembl	74_37	+1	known	missense	c.4345	p.A1449T	0.934	NULL	superfamily_Homeodomain-like,smart_SANT/Myb	-	no_errors	BDP1	HGNC	ENSG00000145734				158	0	0	108	12	10
MAP1B	0	genome.wustl.edu	37	5	71495096	71495096	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	71495096	71495096	T	C	SNP	MAP1B	ENST00000296755	human	ensembl	74_37	+1	known	missense	c.5914	p.Y1972H	0.977	pfam_MAP1B_neuraxin	pfam_MAP1B_neuraxin	-	no_errors	MAP1B	HGNC	ENSG00000131711				138	0	0	134	12	8.21918
ZNF366	0	genome.wustl.edu	37	5	71756528	71756528	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	71756528	71756528	A	T	SNP	ZNF366	ENST00000318442	human	ensembl	74_37	-1	known	missense	c.796	p.Y266N	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF366	HGNC	ENSG00000178175				117	0	0	142	10	6.57895
TNPO1	0	genome.wustl.edu	37	5	72173107	72173107	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	72173107	72173107	G	A	SNP	TNPO1	ENST00000337273	human	ensembl	74_37	+1	known	missense	c.854	p.C285Y	1.000	superfamily_ARM-type_fold	pfam_HEAT,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	TNPO1	HGNC	ENSG00000083312				95	0	0	62	6	8.82353
TNPO1	0	genome.wustl.edu	37	5	72183988	72183988	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	72183988	72183988	C	T	SNP	TNPO1	ENST00000337273	human	ensembl	74_37	+1	known	missense	c.1387	p.R463C	1.000	pfam_HEAT,superfamily_ARM-type_fold	pfam_HEAT,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	TNPO1	HGNC	ENSG00000083312				140	0	0	146	10	6.41026
UTP15	0	genome.wustl.edu	37	5	72864245	72864245	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	72864245	72864245	A	T	SNP	UTP15	ENST00000296792	human	ensembl	74_37	+1	known	missense	c.184	p.I62F	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_U3_snoRNA-assocProt_15_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	UTP15	HGNC	ENSG00000164338				145	0	0	94	10	9.61538
HMGCR	0	genome.wustl.edu	37	5	74646159	74646159	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	74646159	74646159	A	T	SNP	HMGCR	ENST00000287936	human	ensembl	74_37	+1	known	missense	c.740	p.N247I	1.000	pfam_Patched,tigrfam_HMG_CoA_Rdtase_metazoan	pfam_HMG_CoA_Rdtase,pfam_Patched,superfamily_HMG_CoA_Rdtase_sub-bd,superfamily_HMG_CoA_Rdtase_NAD(P)-bd,pfscan_SSD,pfscan_HMG_CoA_Rdtase,prints_HMG_CoA_Rdtase,tigrfam_HMG_CoA_Rdtase_metazoan,tigrfam_HMG_CoA_Rdtase_eu_arc	-	no_errors	HMGCR	HGNC	ENSG00000113161				65	0	0	49	6	10.9091
IQGAP2	0	genome.wustl.edu	37	5	75991429	75991429	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	75991429	75991429	G	A	SNP	IQGAP2	ENST00000274364	human	ensembl	74_37	+1	known	missense	c.4144	p.E1382K	1.000	pfam_RasGAP_C	pfam_RasGAP,pfam_RasGAP_C,pfam_IQ_motif_EF-hand-BS,pfam_CH-domain,superfamily_Rho_GTPase_activation_prot,superfamily_CH-domain,superfamily_P-loop_NTPase,superfamily_WW_dom,smart_CH-domain,smart_IQ_motif_EF-hand-BS,smart_RasGAP,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS,pfscan_WW_dom,pfscan_RasGAP	-	no_errors	IQGAP2	HGNC	ENSG00000145703				75	0	0	67	4	5.6338
F2R	0	genome.wustl.edu	37	5	76029054	76029054	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	76029054	76029054	C	T	SNP	F2R	ENST00000319211	human	ensembl	74_37	+1	known	missense	c.1004	p.A335V	0.001	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Thrmbn_rcpt,prints_GPCR_Rhodpsn,prints_Protea_act_rcpt	-	no_errors	F2R	HGNC	ENSG00000181104				120	0	0	92	28	23.3333
ADCY2	0	genome.wustl.edu	37	5	7773061	7773061	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	7773061	7773061	G	A	SNP	ADCY2	ENST00000338316	human	ensembl	74_37	+1	known	missense	c.2231	p.C744Y	1.000	NULL	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY2	HGNC	ENSG00000078295				218	0	0	181	14	7.17949
DMGDH	0	genome.wustl.edu	37	5	78324268	78324268	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	78324268	78324268	T	A	SNP	DMGDH	ENST00000255189	human	ensembl	74_37	-1	known	missense	c.2020	p.I674L	1.000	pfam_GCV_T_N,pfam_SoxG	pfam_FAD-dep_OxRdtase,pfam_GCV_T_N,pfam_GCV_T_C,pfam_SoxG	-	no_errors	DMGDH	HGNC	ENSG00000132837				75	0	0	56	9	13.8462
BHMT2	0	genome.wustl.edu	37	5	78376559	78376559	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	78376559	78376559	G	A	SNP	BHMT2	ENST00000255192	human	ensembl	74_37	+1	known	missense	c.308	p.G103D	0.026	pfam_S_MeTrfase,superfamily_S_MeTrfase,pirsf_Betaine-hCys_S-MeTrfase_BHMT,pfscan_S_MeTrfase	pfam_S_MeTrfase,superfamily_S_MeTrfase,pirsf_Betaine-hCys_S-MeTrfase_BHMT,pfscan_S_MeTrfase	-	no_errors	BHMT2	HGNC	ENSG00000132840				137	0	0	114	7	5.78512
CMYA5	0	genome.wustl.edu	37	5	79025398	79025398	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	79025398	79025398	G	A	SNP	CMYA5	ENST00000446378	human	ensembl	74_37	+1	known	silent	c.810	p.E270	1.000	NULL	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	-	no_errors	CMYA5	HGNC	ENSG00000164309				108	0	0	69	17	19.7674
CMYA5	0	genome.wustl.edu	37	5	79029726	79029726	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	79029726	79029726	T	C	SNP	CMYA5	ENST00000446378	human	ensembl	74_37	+1	known	missense	c.5138	p.I1713T	0.105	NULL	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	-	no_errors	CMYA5	HGNC	ENSG00000164309				81	0	0	60	19	24.0506
CMYA5	0	genome.wustl.edu	37	5	79030209	79030209	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	79030209	79030209	C	A	SNP	CMYA5	ENST00000446378	human	ensembl	74_37	+1	known	missense	c.5621	p.P1874H	0.000	NULL	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	-	no_errors	CMYA5	HGNC	ENSG00000164309				111	0	0	98	8	7.54717
CMYA5	0	genome.wustl.edu	37	5	79031080	79031080	+	Silent	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	79031080	79031080	G	T	SNP	CMYA5	ENST00000446378	human	ensembl	74_37	+1	known	silent	c.6492	p.P2164	0.010	NULL	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	-	no_errors	CMYA5	HGNC	ENSG00000164309				104	1	0.952381	75	8	9.63855
CMYA5	0	genome.wustl.edu	37	5	79032520	79032520	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	79032520	79032520	T	C	SNP	CMYA5	ENST00000446378	human	ensembl	74_37	+1	known	silent	c.7932	p.D2644	0.002	NULL	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	-	no_errors	CMYA5	HGNC	ENSG00000164309				82	0	0	66	6	8.33333
RASGRF2	0	genome.wustl.edu	37	5	80381689	80381689	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	80381689	80381689	A	G	SNP	RASGRF2	ENST00000265080	human	ensembl	74_37	+1	known	silent	c.1230	p.K410	0.991	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_Ras_GEF_dom,superfamily_DH-domain,smart_Pleckstrin_homology,smart_DH-domain,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_DH-domain,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGRF2	HGNC	ENSG00000113319				184	0	0	130	18	12.1622
RASGRF2	0	genome.wustl.edu	37	5	80521507	80521507	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	80521507	80521507	A	G	SNP	RASGRF2	ENST00000265080	human	ensembl	74_37	+1	known	missense	c.3632	p.Y1211C	1.000	superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_Ras_GEF_dom,superfamily_DH-domain,smart_Pleckstrin_homology,smart_DH-domain,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_DH-domain,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGRF2	HGNC	ENSG00000113319				45	0	0	25	10	28.5714
CKMT2	0	genome.wustl.edu	37	5	80559317	80559317	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	80559317	80559317	G	A	SNP	CKMT2	ENST00000254035	human	ensembl	74_37	+1	known	missense	c.1022	p.R341H	1.000	pfam_ATP-guanido_PTrfase_cat	pfam_ATP-guanido_PTrfase_cat,pfam_ATP-guanido_PTrfase_N,superfamily_ATP-guanido_PTrfase_N	-	no_errors	CKMT2	HGNC	ENSG00000131730				93	0	0	66	30	31.25
ACOT12	0	genome.wustl.edu	37	5	80626717	80626717	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	80626717	80626717	C	T	SNP	ACOT12	ENST00000307624	human	ensembl	74_37	-1	known	silent	c.1434	p.S478	0.002	pfam_START_lipid-bd_dom,pfscan_START_lipid-bd_dom	pfam_Thioestr_supf,pfam_START_lipid-bd_dom,pfscan_START_lipid-bd_dom	-	no_errors	ACOT12	HGNC	ENSG00000172497				63	0	0	43	5	10.4167
ATG10	0	genome.wustl.edu	37	5	81474333	81474333	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	81474333	81474333	A	G	SNP	ATG10	ENST00000282185	human	ensembl	74_37	+1	known	missense	c.380	p.D127G	1.000	pfam_Autophagy-rel_prot_3	pfam_Autophagy-rel_prot_3	-	no_errors	ATG10	HGNC	ENSG00000152348				163	0	0	112	14	11.1111
XRCC4	0	genome.wustl.edu	37	5	82400807	82400807	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	82400807	82400807	T	C	SNP	XRCC4	ENST00000338635	human	ensembl	74_37	+1	known	silent	c.69	p.S23	0.889	pfam_DNA_repair_prot_XRCC4,superfamily_XRCC4_N	pfam_DNA_repair_prot_XRCC4,superfamily_XRCC4_N	-	no_errors	XRCC4	HGNC	ENSG00000152422				151	0	0	106	10	8.62069
VCAN	0	genome.wustl.edu	37	5	82779373	82779373	+	Nonsense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	82779373	82779373	T	A	SNP	VCAN	ENST00000265077	human	ensembl	74_37	+1	known	nonsense	c.36	p.C12*	0.999	NULL	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_EG-like_dom,pfam_Sushi_SCR_CCP,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_Ig_sub,smart_Link,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like_dom,prints_Link	-	no_errors	VCAN	HGNC	ENSG00000038427				84	0	0	49	14	22.2222
NBPF22P	0	genome.wustl.edu	37	5	85578422	85578422	+	RNA	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	85578422	85578422	C	T	SNP	NBPF22P	ENST00000590707	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	NBPF22P	HGNC	ENSG00000205449				11	0	0	9	5	35.7143
RASA1	0	genome.wustl.edu	37	5	86659208	86659208	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	86659208	86659208	T	C	SNP	RASA1	ENST00000274376	human	ensembl	74_37	+1	known	silent	c.1497	p.G499	0.992	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_SH2,pfam_RasGAP,pfam_Pleckstrin_homology,pfam_SH3_domain,pfam_C2_dom,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_SH2,smart_SH3_domain,smart_Pleckstrin_homology,smart_C2_dom,smart_RasGAP,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_RasGAP,prints_SH2	-	no_errors	RASA1	HGNC	ENSG00000145715				108	1	0.917431	93	5	5.10204
TMEM161B	0	genome.wustl.edu	37	5	87494828	87494828	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	87494828	87494828	C	T	SNP	TMEM161B	ENST00000296595	human	ensembl	74_37	-1	known	missense	c.1054	p.A352T	1.000	pfam_Transmembrane_161A/B	pfam_Transmembrane_161A/B	-	no_errors	TMEM161B	HGNC	ENSG00000164180				73	0	0	59	7	10.6061
MEF2C	0	genome.wustl.edu	37	5	88027692	88027692	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	88027692	88027692	A	G	SNP	MEF2C	ENST00000437473	human	ensembl	74_37	-1	known	missense	c.664	p.S222P	1.000	NULL	pfam_TF_MADSbox,pfam_HJURP_C,superfamily_TF_MADSbox,smart_TF_MADSbox,prints_TF_MADSbox,pfscan_TF_MADSbox	-	no_errors	MEF2C	HGNC	ENSG00000081189				55	0	0	53	4	7.01754
GPR98	0	genome.wustl.edu	37	5	89923354	89923354	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	89923354	89923354	T	C	SNP	GPR98	ENST00000405460	human	ensembl	74_37	+1	known	silent	c.999	p.F333	0.998	NULL	pfam_Calx_beta,pfam_EPTP,pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Gal_Oxase/kelch_b-propeller,smart_Calx_beta,pfscan_EAR,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR98	HGNC	ENSG00000164199				197	0	0	146	12	7.59494
GPR98	0	genome.wustl.edu	37	5	90052421	90052421	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	90052421	90052421	G	T	SNP	GPR98	ENST00000405460	human	ensembl	74_37	+1	known	nonsense	c.11731	p.G3911*	1.000	smart_Calx_beta	pfam_Calx_beta,pfam_EPTP,pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Gal_Oxase/kelch_b-propeller,smart_Calx_beta,pfscan_EAR,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR98	HGNC	ENSG00000164199				67	0	0	55	8	12.6984
SEMA5A	0	genome.wustl.edu	37	5	9154655	9154655	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	9154655	9154655	G	A	SNP	SEMA5A	ENST00000382496	human	ensembl	74_37	-1	known	missense	c.1426	p.R476W	0.617	superfamily_Semap_dom,pfscan_Semap_dom	pfam_Semap_dom,pfam_Thrombospondin_1_rpt,superfamily_Semap_dom,superfamily_Thrombospondin_1_rpt,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_Thrombospondin_1_rpt,pfscan_Semap_dom,pfscan_Thrombospondin_1_rpt	-	no_errors	SEMA5A	HGNC	ENSG00000112902				74	0	0	87	11	11.2245
SEMA5A	0	genome.wustl.edu	37	5	9154780	9154780	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	9154780	9154780	A	G	SNP	SEMA5A	ENST00000382496	human	ensembl	74_37	-1	known	missense	c.1301	p.V434A	0.997	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Semap_dom,pfam_Thrombospondin_1_rpt,superfamily_Semap_dom,superfamily_Thrombospondin_1_rpt,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_Thrombospondin_1_rpt,pfscan_Semap_dom,pfscan_Thrombospondin_1_rpt	-	no_errors	SEMA5A	HGNC	ENSG00000112902				115	1	0.862069	95	8	7.76699
NR2F1	0	genome.wustl.edu	37	5	92923678	92923678	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	92923678	92923678	C	T	SNP	NR2F1	ENST00000327111	human	ensembl	74_37	+1	known	silent	c.519	p.L173	1.000	superfamily_Nucl_hormone_rcpt_ligand-bd	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_COUP_TF,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Retinoid-X_rcpt/HNF4	-	no_errors	NR2F1	HGNC	ENSG00000175745				69	0	0	66	4	5.71429
ANKRD32	0	genome.wustl.edu	37	5	94030751	94030751	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	94030751	94030751	G	A	SNP	ANKRD32	ENST00000265140	human	ensembl	74_37	+1	known	missense	c.2911	p.D971N	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_BRCT_dom,smart_BRCT_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD32	HGNC	ENSG00000133302				67	0	0	40	6	13.0435
FAM81B	0	genome.wustl.edu	37	5	94731831	94731831	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	94731831	94731831	C	T	SNP	FAM81B	ENST00000283357	human	ensembl	74_37	+1	known	missense	c.245	p.A82V	0.990	NULL	NULL	-	no_errors	FAM81B	HGNC	ENSG00000153347				144	0	0	86	17	16.5049
TTC37	0	genome.wustl.edu	37	5	94826671	94826671	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	94826671	94826671	T	C	SNP	TTC37	ENST00000358746	human	ensembl	74_37	-1	known	missense	c.3872	p.N1291S	0.072	NULL	pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC37	HGNC	ENSG00000198677				61	0	0	32	5	13.5135
TTC37	0	genome.wustl.edu	37	5	94849321	94849321	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	94849321	94849321	T	A	SNP	TTC37	ENST00000358746	human	ensembl	74_37	-1	known	missense	c.2732	p.Y911F	1.000	NULL	pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC37	HGNC	ENSG00000198677				153	0	0	110	12	9.83607
TTC37	0	genome.wustl.edu	37	5	94857846	94857846	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	94857846	94857846	T	C	SNP	TTC37	ENST00000358746	human	ensembl	74_37	-1	known	missense	c.1923	p.I641M	1.000	smart_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC37	HGNC	ENSG00000198677				159	0	0	119	7	5.55556
SPATA9	0	genome.wustl.edu	37	5	94994504	94994504	+	Silent	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	94994504	94994504	A	C	SNP	SPATA9	ENST00000274432	human	ensembl	74_37	-1	known	silent	c.588	p.P196	0.174	NULL	NULL	-	no_errors	SPATA9	HGNC	ENSG00000145757				100	0	0	52	6	10.3448
ELL2	0	genome.wustl.edu	37	5	95249552	95249552	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	95249552	95249552	C	T	SNP	ELL2	ENST00000237853	human	ensembl	74_37	-1	known	missense	c.404	p.R135Q	1.000	pfam_RNA_pol_II_elong_fac_ELL	pfam_RNA_pol_II_elong_fac_ELL,pfam_Occludin_RNApol2_elong_fac_ELL	-	no_errors	ELL2	HGNC	ENSG00000118985				202	1	0.492611	128	26	16.8831
PCSK1	0	genome.wustl.edu	37	5	95746500	95746500	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	95746500	95746500	C	T	SNP	PCSK1	ENST00000311106	human	ensembl	74_37	-1	known	missense	c.1073	p.G358E	1.000	pfam_Peptidase_S8/S53_dom,superfamily_Peptidase_S8/S53_dom	pfam_Peptidase_S8/S53_dom,pfam_PrprotnconvertsP,pfam_Proho_convert,superfamily_Peptidase_S8/S53_dom,superfamily_Galactose-bd-like,superfamily_Prot_inh_propept,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK1	HGNC	ENSG00000175426				224	0	0	187	14	6.96517
ERAP1	0	genome.wustl.edu	37	5	96139196	96139196	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	96139196	96139196	T	C	SNP	ERAP1	ENST00000296754	human	ensembl	74_37	-1	known	missense	c.434	p.Y145C	0.990	pfam_Peptidase_M1_N	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	ERAP1	HGNC	ENSG00000164307				102	0	0	104	10	8.77193
ERAP2	0	genome.wustl.edu	37	5	96251474	96251474	+	Splice_Site	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	96251474	96251474	G	A	SNP	ERAP2	ENST00000437043	human	ensembl	74_37	+1	known	splice_site	c.2739+1	e17+1	1.000	-	-	-	no_errors	ERAP2	HGNC	ENSG00000164308				149	0	0	117	8	6.4
RGMB	0	genome.wustl.edu	37	5	98129124	98129124	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	98129124	98129124	C	T	SNP	RGMB	ENST00000308234	human	ensembl	74_37	+1	known	silent	c.1104	p.G368	1.000	pfam_RGM_C	pfam_RGM_C,pfam_RGM_N	-	no_errors	RGMB	HGNC	ENSG00000174136				16	0	0	6	3	33.3333
CHD1	0	genome.wustl.edu	37	5	98194704	98194704	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	98194704	98194704	T	C	SNP	CHD1	ENST00000284049	human	ensembl	74_37	-1	known	missense	c.4540	p.N1514D	1.000	NULL	pfam_SNF2_N,pfam_Chromo_domain,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,superfamily_Homeodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD1	HGNC	ENSG00000153922				74	0	0	45	3	6.25
SIM1	0	genome.wustl.edu	37	6	100841584	100841584	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	100841584	100841584	G	A	SNP	SIM1	ENST00000262901	human	ensembl	74_37	-1	known	missense	c.1349	p.A450V	0.946	pfam_SIM_C	pfam_SIM_C,pfam_PAS_fold_3,pfam_PAS_fold,pfam_bHLH_dom,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,smart_PAC,pfscan_PAS,pfscan_bHLH_dom	-	no_errors	SIM1	HGNC	ENSG00000112246				95	0	0	71	18	20.2247
ASCC3	0	genome.wustl.edu	37	6	101099511	101099511	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	101099511	101099511	T	C	SNP	ASCC3	ENST00000369162	human	ensembl	74_37	-1	known	silent	c.3000	p.E1000	1.000	pfam_Sec63-dom,smart_Sec63-dom	pfam_Sec63-dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_AAA+_ATPase,smart_Helicase_C,smart_Sec63-dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ASCC3	HGNC	ENSG00000112249				91	0	0	56	4	6.66667
ASCC3	0	genome.wustl.edu	37	6	101296112	101296112	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	101296112	101296112	A	G	SNP	ASCC3	ENST00000369162	human	ensembl	74_37	-1	known	missense	c.713	p.M238T	1.000	NULL	pfam_Sec63-dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_AAA+_ATPase,smart_Helicase_C,smart_Sec63-dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ASCC3	HGNC	ENSG00000112249				119	0	0	74	8	9.7561
ASCC3	0	genome.wustl.edu	37	6	101296277	101296277	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	101296277	101296277	G	T	SNP	ASCC3	ENST00000369162	human	ensembl	74_37	-1	known	missense	c.548	p.P183Q	1.000	NULL	pfam_Sec63-dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_AAA+_ATPase,smart_Helicase_C,smart_Sec63-dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ASCC3	HGNC	ENSG00000112249				102	0	0	71	7	8.97436
LINC00518	0	genome.wustl.edu	37	6	10430275	10430275	+	RNA	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	10430275	10430275	T	C	SNP	LINC00518	ENST00000472178	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	LINC00518	HGNC	ENSG00000183674				108	0	0	115	9	7.25806
POPDC3	0	genome.wustl.edu	37	6	105606454	105606454	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	105606454	105606454	T	C	SNP	POPDC3	ENST00000254765	human	ensembl	74_37	-1	known	missense	c.767	p.Y256C	0.552	NULL	pfam_Popeye_prot,superfamily_cNMP-bd-like	-	no_errors	POPDC3	HGNC	ENSG00000132429				150	0	0	125	8	6.01504
PREP	0	genome.wustl.edu	37	6	105736671	105736671	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	105736671	105736671	G	A	SNP	PREP	ENST00000369110	human	ensembl	74_37	-1	known	silent	c.1416	p.G472	1.000	prints_Peptidase_S9A	pfam_Pept_S9A_N,pfam_Peptidase_S9,prints_Peptidase_S9A	-	no_errors	PREP	HGNC	ENSG00000085377				68	0	0	52	13	20
AIM1	0	genome.wustl.edu	37	6	106968337	106968337	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	106968337	106968337	C	T	SNP	AIM1	ENST00000369066	human	ensembl	74_37	+1	known	missense	c.2030	p.A677V	0.553	NULL	pfam_Beta/gamma_crystallin,pfam_Ricin_B_lectin,superfamily_G_crystallin-rel,superfamily_Ricin_B_lectin,smart_Beta/gamma_crystallin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	AIM1	HGNC	ENSG00000112297				70	0	0	53	4	7.01754
RTN4IP1	0	genome.wustl.edu	37	6	107050795	107050795	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	107050795	107050795	A	G	SNP	RTN4IP1	ENST00000369063	human	ensembl	74_37	-1	known	missense	c.623	p.V208A	0.945	superfamily_GroES-like,smart_PKS_ER	pfam_ADH_C,pfam_ADH_GroES-like,superfamily_GroES-like,smart_PKS_ER	-	no_errors	RTN4IP1	HGNC	ENSG00000130347				112	0	0	76	5	6.17284
PAK1IP1	0	genome.wustl.edu	37	6	10709645	10709645	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	10709645	10709645	A	G	SNP	PAK1IP1	ENST00000379568	human	ensembl	74_37	+1	known	missense	c.1139	p.E380G	0.980	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	PAK1IP1	HGNC	ENSG00000111845				102	0	0	60	8	11.7647
QRSL1	0	genome.wustl.edu	37	6	107096961	107096961	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	107096961	107096961	T	A	SNP	QRSL1	ENST00000369046	human	ensembl	74_37	+1	known	missense	c.442	p.Y148N	0.998	pfam_Amidase,superfamily_Amidase_dom,tigrfam_GatA	pfam_Amidase,superfamily_Amidase_dom,tigrfam_GatA	-	no_errors	QRSL1	HGNC	ENSG00000130348				103	0	0	50	15	23.0769
TMEM14C	0	genome.wustl.edu	37	6	10730924	10730924	+	RNA	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	10730924	10730924	T	C	SNP	TMEM14C	ENST00000466421	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	TMEM14C	HGNC	ENSG00000111843				42	0	0	51	3	5.55556
MAK	0	genome.wustl.edu	37	6	10796316	10796316	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	10796316	10796316	A	G	SNP	MAK	ENST00000313243	human	ensembl	74_37	-1	known	missense	c.1058	p.L353P	0.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAK	HGNC	ENSG00000111837				337	0	0	311	30	8.79765
MAK	0	genome.wustl.edu	37	6	10802142	10802142	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	10802142	10802142	G	A	SNP	MAK	ENST00000313243	human	ensembl	74_37	-1	known	nonsense	c.814	p.R272*	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAK	HGNC	ENSG00000111837				121	0	0	102	6	5.55556
SCML4	0	genome.wustl.edu	37	6	108067978	108067978	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	108067978	108067978	G	A	SNP	SCML4	ENST00000369021	human	ensembl	74_37	-1	known	silent	c.315	p.A105	0.005	pfam_DUF3588	pfam_DUF3588	-	no_errors	SCML4	HGNC	ENSG00000146285				80	0	0	60	13	17.8082
SEC63	0	genome.wustl.edu	37	6	108246125	108246125	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	108246125	108246125	A	G	SNP	SEC63	ENST00000369002	human	ensembl	74_37	-1	known	missense	c.236	p.L79P	1.000	NULL	pfam_Sec63-dom,pfam_DnaJ_domain,superfamily_DnaJ_domain,superfamily_ARM-type_fold,smart_DnaJ_domain,smart_Sec63-dom,prints_DnaJ_domain,pfscan_DnaJ_domain	-	no_errors	SEC63	HGNC	ENSG00000025796				114	0	0	65	5	7.14286
OSTM1	0	genome.wustl.edu	37	6	108395540	108395540	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	108395540	108395540	C	T	SNP	OSTM1	ENST00000193322	human	ensembl	74_37	-1	known	missense	c.316	p.A106T	1.000	pfam_Osteopetrosis-assoc_TM_1	pfam_Osteopetrosis-assoc_TM_1	-	no_errors	OSTM1	HGNC	ENSG00000081087				23	0	0	26	3	10.3448
CEP57L1	0	genome.wustl.edu	37	6	109484127	109484127	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	109484127	109484127	A	G	SNP	CEP57L1	ENST00000359793	human	ensembl	74_37	+1	known	missense	c.1337	p.N446S	1.000	NULL	pfam_Cep57_MT-bd_dom	-	no_errors	CEP57L1	HGNC	ENSG00000183137				57	0	0	33	5	13.1579
ZBTB24	0	genome.wustl.edu	37	6	109803146	109803146	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	109803146	109803146	C	A	SNP	ZBTB24	ENST00000230122	human	ensembl	74_37	-1	known	missense	c.84	p.E28D	0.976	pfam_BTB_POZ,superfamily_BTB/POZ_fold	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB24	HGNC	ENSG00000112365				71	0	0	62	7	10.1449
AK9	0	genome.wustl.edu	37	6	109854523	109854523	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	109854523	109854523	C	G	SNP	AK9	ENST00000424296	human	ensembl	74_37	-1	known	missense	c.3501	p.K1167N	0.996	pfam_Adenylate_kin,superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_Adenylate_kin,pfam_YHS_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	AK9	HGNC	ENSG00000155085				81	0	0	45	4	8.16327
AK9	0	genome.wustl.edu	37	6	109871475	109871475	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	109871475	109871475	G	A	SNP	AK9	ENST00000424296	human	ensembl	74_37	-1	known	missense	c.2782	p.H928Y	0.999	superfamily_P-loop_NTPase	pfam_Adenylate_kin,pfam_YHS_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	AK9	HGNC	ENSG00000155085				136	0	0	110	8	6.77966
ELOVL2	0	genome.wustl.edu	37	6	10989995	10989995	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	10989995	10989995	T	C	SNP	ELOVL2	ENST00000354666	human	ensembl	74_37	-1	known	missense	c.706	p.I236V	1.000	pfam_GNS1_SUR4	pfam_GNS1_SUR4	-	no_errors	ELOVL2	HGNC	ENSG00000197977				80	0	0	69	4	5.47945
GPR6	0	genome.wustl.edu	37	6	110300428	110300428	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	110300428	110300428	C	T	SNP	GPR6	ENST00000414000	human	ensembl	74_37	+1	known	missense	c.158	p.P53L	0.056	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPR6,prints_GPR_3/6/12_orphan,prints_GPCR_Rhodpsn	-	no_errors	GPR6	HGNC	ENSG00000146360				53	0	0	43	10	18.8679
GPR6	0	genome.wustl.edu	37	6	110300509	110300509	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	110300509	110300509	C	T	SNP	GPR6	ENST00000414000	human	ensembl	74_37	+1	known	missense	c.239	p.P80L	0.003	prints_GPR6	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPR6,prints_GPR_3/6/12_orphan,prints_GPCR_Rhodpsn	-	no_errors	GPR6	HGNC	ENSG00000146360				130	0	0	113	26	18.705
GPR6	0	genome.wustl.edu	37	6	110300639	110300639	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	110300639	110300639	C	T	SNP	GPR6	ENST00000414000	human	ensembl	74_37	+1	known	silent	c.369	p.F123	0.998	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPR_3/6/12_orphan,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPR6,prints_GPR_3/6/12_orphan,prints_GPCR_Rhodpsn	-	no_errors	GPR6	HGNC	ENSG00000146360				110	0	0	113	6	5.04202
SLC22A16	0	genome.wustl.edu	37	6	110777921	110777921	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	110777921	110777921	C	T	SNP	SLC22A16	ENST00000368919	human	ensembl	74_37	-1	known	missense	c.353	p.G118D	0.990	pfscan_MFS_dom	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A16	HGNC	ENSG00000004809				227	0	0	187	15	7.42574
AMD1	0	genome.wustl.edu	37	6	111213504	111213504	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	111213504	111213504	A	G	SNP	AMD1	ENST00000368885	human	ensembl	74_37	+1	known	missense	c.473	p.Y158C	1.000	pfam_S-AdoMet_decarboxylase,superfamily_S-AdoMet_deCO2ase_core,pirsf_S-AdoMet_decarboxylase_subgr,tigrfam_S-AdoMet_decarboxylase_subgr	pfam_S-AdoMet_decarboxylase,superfamily_S-AdoMet_deCO2ase_core,pirsf_S-AdoMet_decarboxylase_subgr,tigrfam_S-AdoMet_decarboxylase_subgr	-	no_errors	AMD1	HGNC	ENSG00000123505				110	0	0	81	7	7.95455
KIAA1919	0	genome.wustl.edu	37	6	111585063	111585063	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	111585063	111585063	T	C	SNP	KIAA1919	ENST00000368847	human	ensembl	74_37	+1	known	missense	c.227	p.L76P	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	KIAA1919	HGNC	ENSG00000173214				173	0	0	135	17	11.1842
REV3L	0	genome.wustl.edu	37	6	111680216	111680216	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	111680216	111680216	A	T	SNP	REV3L	ENST00000358835	human	ensembl	74_37	-1	known	missense	c.6881	p.I2294K	1.000	pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B	-	no_errors	REV3L	HGNC	ENSG00000009413				85	0	0	53	3	5.35714
REV3L	0	genome.wustl.edu	37	6	111694279	111694279	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	111694279	111694279	T	A	SNP	REV3L	ENST00000358835	human	ensembl	74_37	-1	known	missense	c.5279	p.D1760V	0.998	superfamily_RNaseH-like_dom	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B	-	no_errors	REV3L	HGNC	ENSG00000009413				191	0	0	164	10	5.74713
REV3L	0	genome.wustl.edu	37	6	111696103	111696103	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	111696103	111696103	C	T	SNP	REV3L	ENST00000358835	human	ensembl	74_37	-1	known	missense	c.3455	p.G1152D	1.000	superfamily_RNaseH-like_dom	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B	-	no_errors	REV3L	HGNC	ENSG00000009413				201	0	0	141	8	5.36913
REV3L	0	genome.wustl.edu	37	6	111696362	111696362	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	111696362	111696362	T	C	SNP	REV3L	ENST00000358835	human	ensembl	74_37	-1	known	missense	c.3196	p.N1066D	0.984	superfamily_RNaseH-like_dom	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B	-	no_errors	REV3L	HGNC	ENSG00000009413				114	0	0	75	5	6.25
NEDD9	0	genome.wustl.edu	37	6	11191156	11191156	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	11191156	11191156	C	T	SNP	NEDD9	ENST00000379446	human	ensembl	74_37	-1	known	missense	c.946	p.A316T	0.897	NULL	pfam_CAS_DUF3513,pfam_Serine_rich,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	NEDD9	HGNC	ENSG00000111859				84	0	0	78	9	10.3448
FYN	0	genome.wustl.edu	37	6	112041137	112041137	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	112041137	112041137	G	A	SNP	FYN	ENST00000354650	human	ensembl	74_37	-1	known	missense	c.118	p.P40S	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,prints_SH3_domain	-	no_errors	FYN	HGNC	ENSG00000010810				55	0	0	57	5	8.06452
HDAC2	0	genome.wustl.edu	37	6	114267237	114267237	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	114267237	114267237	A	T	SNP	HDAC2	ENST00000398283	human	ensembl	74_37	-1	known	missense	c.1199	p.I400N	1.000	pfam_His_deacetylse_dom	pfam_His_deacetylse_dom,prints_His_deacetylse_1,prints_His_deacetylse	-	no_errors	HDAC2	HGNC	ENSG00000196591				135	0	0	97	7	6.73077
TMEM170B	0	genome.wustl.edu	37	6	11565992	11565992	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	11565992	11565992	A	T	SNP	TMEM170B	ENST00000543875	human	ensembl	74_37	+1	known	missense	c.191	p.H64L	1.000	pfam_Transmembrane_pr_170	pfam_Transmembrane_pr_170	-	no_errors	TMEM170B	HGNC	ENSG00000205269				229	0	0	215	19	8.11966
DSE	0	genome.wustl.edu	37	6	116758204	116758204	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	116758204	116758204	A	G	SNP	DSE	ENST00000537543	human	ensembl	74_37	+1	known	missense	c.2630	p.D877G	1.000	NULL	superfamily_Chondroitin_lyas	-	no_errors	DSE	HGNC	ENSG00000111817				70	0	0	57	4	6.55738
ZUFSP	0	genome.wustl.edu	37	6	116987885	116987885	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	116987885	116987885	T	C	SNP	ZUFSP	ENST00000368576	human	ensembl	74_37	-1	known	silent	c.471	p.P157	0.991	smart_Znf_C2H2-like	pfam_Peptidase_C78_UfSP1/2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZUFSP	HGNC	ENSG00000153975				123	0	0	80	7	8.04598
GPRC6A	0	genome.wustl.edu	37	6	117113550	117113550	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	117113550	117113550	T	C	SNP	GPRC6A	ENST00000310357	human	ensembl	74_37	-1	known	missense	c.2536	p.K846E	0.990	pfscan_GPCR_3_C	pfam_GPCR_3_C,pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_vmron_rcpt_2	-	no_errors	GPRC6A	HGNC	ENSG00000173612				120	0	0	86	10	10.4167
RFX6	0	genome.wustl.edu	37	6	117237196	117237196	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	117237196	117237196	A	G	SNP	RFX6	ENST00000332958	human	ensembl	74_37	+1	known	missense	c.806	p.K269R	1.000	NULL	pfam_DNA-bd_RFX	-	no_errors	RFX6	HGNC	ENSG00000185002				110	0	0	70	16	18.6047
ROS1	0	genome.wustl.edu	37	6	117715341	117715341	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	117715341	117715341	A	G	SNP	ROS1	ENST00000368508	human	ensembl	74_37	-1	known	missense	c.1148	p.F383S	1.000	smart_LDLR_classB_rpt	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_LDLR_classB_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	ROS1	HGNC	ENSG00000047936				71	0	0	56	4	6.66667
FAM184A	0	genome.wustl.edu	37	6	119341193	119341193	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	119341193	119341193	T	G	SNP	FAM184A	ENST00000338891	human	ensembl	74_37	-1	known	missense	c.1282	p.T428P	0.999	NULL	superfamily_Prefoldin	-	no_errors	FAM184A	HGNC	ENSG00000111879				102	1	0.970874	74	4	5.12821
TBC1D32	0	genome.wustl.edu	37	6	121452891	121452891	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	121452891	121452891	A	T	SNP	TBC1D32	ENST00000275159	human	ensembl	74_37	-1	putative	missense	c.2904	p.D968E	0.595	NULL	superfamily_Rab-GTPase-TBC_dom	-	no_errors	TBC1D32	HGNC	ENSG00000146350				47	0	0	32	6	15.7895
GJA1	0	genome.wustl.edu	37	6	121768523	121768523	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	121768523	121768523	A	G	SNP	GJA1	ENST00000282561	human	ensembl	74_37	+1	known	missense	c.530	p.Y177C	1.000	pfam_Connexin_CCC,prints_Connexin	pfam_Connexin_N,pfam_Connexin_CCC,pfam_Connexin43_C,smart_Connexin_N,prints_Connexin,prints_Connexin43	-	no_errors	GJA1	HGNC	ENSG00000152661				156	0	0	109	27	19.8529
SERINC1	0	genome.wustl.edu	37	6	122777743	122777743	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	122777743	122777743	A	G	SNP	SERINC1	ENST00000339697	human	ensembl	74_37	-1	known	missense	c.254	p.V85A	1.000	pfam_TMS_TDE	pfam_TMS_TDE	-	no_errors	SERINC1	HGNC	ENSG00000111897				73	0	0	38	9	19.1489
CLVS2	0	genome.wustl.edu	37	6	123332155	123332155	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	123332155	123332155	G	A	SNP	CLVS2	ENST00000275162	human	ensembl	74_37	+1	known	missense	c.415	p.A139T	1.000	pfam_CRAL-TRIO_dom,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	pfam_CRAL-TRIO_dom,pfam_CRAL/TRIO_N_dom,superfamily_CRAL-TRIO_dom,superfamily_CRAL/TRIO_N_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,prints_CRAL-bd_toc_tran	-	no_errors	CLVS2	HGNC	ENSG00000146352				157	0	0	117	8	6.4
TPD52L1	0	genome.wustl.edu	37	6	125541286	125541286	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	125541286	125541286	T	C	SNP	TPD52L1	ENST00000534000	human	ensembl	74_37	+1	known	missense	c.82	p.S28P	1.000	pfam_TPD52	pfam_TPD52	-	no_errors	TPD52L1	HGNC	ENSG00000111907				188	0	0	127	20	13.6054
HDDC2	0	genome.wustl.edu	37	6	125621699	125621699	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	125621699	125621699	C	T	SNP	HDDC2	ENST00000398153	human	ensembl	74_37	-1	known	missense	c.191	p.R64H	0.000	pfam_HD_domain,smart_HD/PDEase_dom	pfam_HD_domain,smart_HD/PDEase_dom	-	no_errors	HDDC2	HGNC	ENSG00000111906				127	0	0	102	11	9.73451
NCOA7	0	genome.wustl.edu	37	6	126203608	126203608	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	126203608	126203608	G	A	SNP	NCOA7	ENST00000368357	human	ensembl	74_37	+1	known	missense	c.610	p.E204K	1.000	NULL	pfam_TLDc,pfam_LysM_dom,pfam_GRAM,smart_LysM_dom,smart_TLDc	-	no_errors	NCOA7	HGNC	ENSG00000111912				70	0	0	40	10	20
HINT3	0	genome.wustl.edu	37	6	126293417	126293417	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	126293417	126293417	T	C	SNP	HINT3	ENST00000229633	human	ensembl	74_37	+1	known	missense	c.332	p.V111A	0.988	pfam_Histidine_triad_HIT,superfamily_HIT-like,pfscan_HIT-like	pfam_Histidine_triad_HIT,superfamily_HIT-like,pfscan_HIT-like	-	no_errors	HINT3	HGNC	ENSG00000111911				136	0	0	97	16	14.1593
RSPO3	0	genome.wustl.edu	37	6	127476519	127476519	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	127476519	127476519	T	C	SNP	RSPO3	ENST00000368317	human	ensembl	74_37	+1	known	silent	c.570	p.C190	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_Thrombospondin_1_rpt,smart_Furin_repeat,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	RSPO3	HGNC	ENSG00000146374				64	0	0	57	4	6.55738
RNF146	0	genome.wustl.edu	37	6	127608346	127608346	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	127608346	127608346	C	T	SNP	RNF146	ENST00000368314	human	ensembl	74_37	+1	known	silent	c.588	p.S196	1.000	NULL	pfam_WWE-dom,smart_Znf_RING,smart_WWE-dom_subgr,pfscan_WWE-dom,pfscan_Znf_RING	-	no_errors	RNF146	HGNC	ENSG00000118518				95	0	0	63	6	8.69565
SOGA3	0	genome.wustl.edu	37	6	127796643	127796643	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	127796643	127796643	G	A	SNP	SOGA3	ENST00000368268	human	ensembl	74_37	-1	known	missense	c.2528	p.A843V	1.000	NULL	pfam_SOGA	-	no_errors	SOGA3	HGNC	ENSG00000214338				125	0	0	113	33	22.6027
SOGA3	0	genome.wustl.edu	37	6	127836177	127836177	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	127836177	127836177	G	T	SNP	SOGA3	ENST00000368268	human	ensembl	74_37	-1	known	missense	c.1117	p.L373M	1.000	NULL	pfam_SOGA	-	no_errors	SOGA3	HGNC	ENSG00000214338				121	0	0	106	7	6.19469
SOGA3	0	genome.wustl.edu	37	6	127837089	127837089	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	127837089	127837089	C	T	SNP	SOGA3	ENST00000368268	human	ensembl	74_37	-1	known	missense	c.671	p.G224D	1.000	NULL	pfam_SOGA	-	no_errors	SOGA3	HGNC	ENSG00000214338				35	0	0	24	4	14.2857
SOGA3	0	genome.wustl.edu	37	6	127837612	127837612	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	127837612	127837612	G	A	SNP	SOGA3	ENST00000368268	human	ensembl	74_37	-1	known	silent	c.148	p.L50	0.000	NULL	pfam_SOGA	-	no_errors	SOGA3	HGNC	ENSG00000214338				67	0	0	47	4	7.84314
THEMIS	0	genome.wustl.edu	37	6	128040898	128040898	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	128040898	128040898	C	A	SNP	THEMIS	ENST00000543064	human	ensembl	74_37	-1	known	missense	c.1946	p.G649V	0.986	NULL	NULL	-	no_errors	THEMIS	HGNC	ENSG00000172673				84	0	0	68	11	13.9241
PTPRK	0	genome.wustl.edu	37	6	128302346	128302346	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	128302346	128302346	T	C	SNP	PTPRK	ENST00000368227	human	ensembl	74_37	-1	known	missense	c.3677	p.D1226G	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Ig_sub,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRK	HGNC	ENSG00000152894				71	0	0	61	13	17.5676
PTPRK	0	genome.wustl.edu	37	6	128388793	128388793	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	128388793	128388793	C	T	SNP	PTPRK	ENST00000368227	human	ensembl	74_37	-1	known	silent	c.2028	p.P676	0.000	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Ig_sub,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRK	HGNC	ENSG00000152894				106	0	0	107	7	6.14035
PTPRK	0	genome.wustl.edu	37	6	128410836	128410836	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	128410836	128410836	A	G	SNP	PTPRK	ENST00000368227	human	ensembl	74_37	-1	known	silent	c.1464	p.D488	1.000	superfamily_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Ig_sub,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRK	HGNC	ENSG00000152894				136	0	0	88	25	22.1239
LAMA2	0	genome.wustl.edu	37	6	129799866	129799866	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	129799866	129799866	G	A	SNP	LAMA2	ENST00000421865	human	ensembl	74_37	+1	known	missense	c.7480	p.G2494S	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_B_type_IV,pfam_Laminin_II,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,superfamily_t-SNARE,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA2	HGNC	ENSG00000196569				132	0	0	84	19	18.4466
LAMA2	0	genome.wustl.edu	37	6	129802444	129802444	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	129802444	129802444	G	A	SNP	LAMA2	ENST00000421865	human	ensembl	74_37	+1	known	missense	c.7609	p.V2537M	1.000	superfamily_ConA-like_lec_gl_sf,pfscan_Laminin_G	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_B_type_IV,pfam_Laminin_II,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,superfamily_t-SNARE,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA2	HGNC	ENSG00000196569				133	0	0	88	9	9.27835
LAMA2	0	genome.wustl.edu	37	6	129826384	129826384	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	129826384	129826384	G	T	SNP	LAMA2	ENST00000421865	human	ensembl	74_37	+1	known	missense	c.8587	p.V2863L	0.995	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_B_type_IV,pfam_Laminin_II,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,superfamily_t-SNARE,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA2	HGNC	ENSG00000196569				103	0	0	79	9	10.2273
L3MBTL3	0	genome.wustl.edu	37	6	130381225	130381225	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	130381225	130381225	G	A	SNP	L3MBTL3	ENST00000361794	human	ensembl	74_37	+1	known	missense	c.804	p.M268I	1.000	pfam_Mbt,smart_Mbt,pfscan_Mbt	pfam_Mbt,pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_Mbt,smart_SAM,pfscan_Mbt,pfscan_SAM	-	no_errors	L3MBTL3	HGNC	ENSG00000198945				64	0	0	40	4	9.09091
SAMD3	0	genome.wustl.edu	37	6	130465868	130465868	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	130465868	130465868	C	T	SNP	SAMD3	ENST00000368134	human	ensembl	74_37	-1	known	missense	c.1360	p.E454K	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	SAMD3	HGNC	ENSG00000164483				91	0	0	79	5	5.95238
EPB41L2	0	genome.wustl.edu	37	6	131220650	131220650	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	131220650	131220650	A	T	SNP	EPB41L2	ENST00000337057	human	ensembl	74_37	-1	known	missense	c.1217	p.V406D	1.000	pirsf_Band_41_protein,pfam_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	pirsf_Band_41_protein,pfam_Band_4.1_C,pfam_SAB_dom,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like,pfscan_FERM_domain	-	no_errors	EPB41L2	HGNC	ENSG00000079819				92	0	0	56	4	6.66667
EPB41L2	0	genome.wustl.edu	37	6	131277431	131277431	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	131277431	131277431	C	T	SNP	EPB41L2	ENST00000337057	human	ensembl	74_37	-1	known	silent	c.195	p.E65	1.000	pirsf_Band_41_protein	pirsf_Band_41_protein,pfam_Band_4.1_C,pfam_SAB_dom,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like,pfscan_FERM_domain	-	no_errors	EPB41L2	HGNC	ENSG00000079819				191	1	0.520833	145	10	6.45161
MED23	0	genome.wustl.edu	37	6	131915302	131915302	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	131915302	131915302	C	T	SNP	MED23	ENST00000368058	human	ensembl	74_37	-1	known	missense	c.3187	p.E1063K	1.000	pfam_Mediator_Med23	pfam_Mediator_Med23	-	no_errors	MED23	HGNC	ENSG00000112282				78	0	0	67	5	6.94444
MED23	0	genome.wustl.edu	37	6	131927653	131927653	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	131927653	131927653	T	A	SNP	MED23	ENST00000368058	human	ensembl	74_37	-1	known	missense	c.1351	p.I451F	1.000	pfam_Mediator_Med23	pfam_Mediator_Med23	-	no_errors	MED23	HGNC	ENSG00000112282				115	0	0	70	8	10.2564
ENPP3	0	genome.wustl.edu	37	6	131992414	131992414	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	131992414	131992414	A	G	SNP	ENPP3	ENST00000357639	human	ensembl	74_37	+1	known	missense	c.589	p.M197V	0.998	pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	pfam_Phosphodiest/P_Trfase,pfam_Somatomedin_B_dom,pfam_DNA/RNA_non-sp_Endonuclease,superfamily_Alkaline_phosphatase_core,smart_Somatomedin_B_dom,smart_DNA/RNA_non-sp_Endonuclease,smart_Extracellular_endonuc_su_A,pfscan_Somatomedin_B_dom	-	no_errors	ENPP3	HGNC	ENSG00000154269				123	0	0	108	11	9.2437
CTAGE9	0	genome.wustl.edu	37	6	132031748	132031748	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	132031748	132031748	C	A	SNP	CTAGE9	ENST00000314099	human	ensembl	74_37	-1	known	missense	c.410	p.R137M	0.000	NULL	NULL	-	no_errors	CTAGE9	HGNC	ENSG00000236761				301	1	0.331126	232	13	5.30612
ENPP1	0	genome.wustl.edu	37	6	132190497	132190497	+	Splice_Site	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	132190497	132190497	G	A	SNP	ENPP1	ENST00000360971	human	ensembl	74_37	+1	known	splice_site	c.1274-1	e13-1	1.000	-	-	-	no_errors	ENPP1	HGNC	ENSG00000197594				78	0	0	50	3	5.66038
MOXD1	0	genome.wustl.edu	37	6	132636881	132636881	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	132636881	132636881	T	C	SNP	MOXD1	ENST00000367963	human	ensembl	74_37	-1	known	silent	c.1401	p.S467	0.927	superfamily_PHM/PNGase_F_dom	pfam_Cu2_ascorb_mOase_N,pfam_DOMON_domain,superfamily_PHM/PNGase_F_dom,smart_DOMON_domain,pfscan_DOMON_domain,prints_Dopamine_b_mOase	-	no_errors	MOXD1	HGNC	ENSG00000079931				150	0	0	120	11	8.39695
MOXD1	0	genome.wustl.edu	37	6	132695860	132695860	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	132695860	132695860	A	G	SNP	MOXD1	ENST00000367963	human	ensembl	74_37	-1	known	silent	c.321	p.H107	0.974	pfam_DOMON_domain,smart_DOMON_domain,pfscan_DOMON_domain	pfam_Cu2_ascorb_mOase_N,pfam_DOMON_domain,superfamily_PHM/PNGase_F_dom,smart_DOMON_domain,pfscan_DOMON_domain,prints_Dopamine_b_mOase	-	no_errors	MOXD1	HGNC	ENSG00000079931				118	0	0	78	10	11.3636
TAAR5	0	genome.wustl.edu	37	6	132909949	132909949	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	132909949	132909949	A	C	SNP	TAAR5	ENST00000258034	human	ensembl	74_37	-1	known	missense	c.877	p.F293V	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_TAAR_fam	-	no_errors	TAAR5	HGNC	ENSG00000135569				122	0	0	97	11	10.1852
VNN2	0	genome.wustl.edu	37	6	133072393	133072393	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	133072393	133072393	T	C	SNP	VNN2	ENST00000326499	human	ensembl	74_37	-1	known	missense	c.1091	p.E364G	0.958	pirsf_Biotinidase_euk	pirsf_Biotinidase_euk,pfam_C-N_Hydrolase,superfamily_C-N_Hydrolase,pfscan_C-N_Hydrolase	-	no_errors	VNN2	HGNC	ENSG00000112303				156	0	0	110	13	10.5691
SLC18B1	0	genome.wustl.edu	37	6	133092043	133092043	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	133092043	133092043	A	G	SNP	SLC18B1	ENST00000275227	human	ensembl	74_37	-1	known	silent	c.1290	p.Y430	0.073	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC18B1	HGNC	ENSG00000146409				324	0	0	213	13	5.75221
EYA4	0	genome.wustl.edu	37	6	133834178	133834178	+	Splice_Site	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	133834178	133834178	T	C	SNP	EYA4	ENST00000355167	human	ensembl	74_37	+1	known	splice_site	c.1501+2	e15+2	1.000	-	-	-	no_errors	EYA4	HGNC	ENSG00000112319				57	0	0	49	6	10.9091
TCF21	0	genome.wustl.edu	37	6	134210807	134210807	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	134210807	134210807	G	A	SNP	TCF21	ENST00000237316	human	ensembl	74_37	+1	known	missense	c.272	p.R91H	1.000	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	TCF21	HGNC	ENSG00000118526				71	0	0	70	24	25.5319
TCF21	0	genome.wustl.edu	37	6	134210965	134210965	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	134210965	134210965	T	C	SNP	TCF21	ENST00000237316	human	ensembl	74_37	+1	known	missense	c.430	p.Y144H	0.997	superfamily_bHLH_dom	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	TCF21	HGNC	ENSG00000118526				73	0	0	76	7	8.43373
ALDH8A1	0	genome.wustl.edu	37	6	135271131	135271131	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	135271131	135271131	A	G	SNP	ALDH8A1	ENST00000265605	human	ensembl	74_37	-1	known	missense	c.61	p.C21R	0.998	superfamily_Ald_DH/histidinol_DH	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	-	no_errors	ALDH8A1	HGNC	ENSG00000118514				103	0	0	81	12	12.9032
AHI1	0	genome.wustl.edu	37	6	135751062	135751062	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	135751062	135751062	A	T	SNP	AHI1	ENST00000265602	human	ensembl	74_37	-1	known	missense	c.2450	p.I817N	1.000	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_SH3_domain,pfam_SH3_2,superfamily_WD40_repeat_dom,superfamily_SH3_domain,smart_WD40_repeat,smart_SH3_domain,pfscan_SH3_domain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_SH3_domain	-	no_errors	AHI1	HGNC	ENSG00000135541				24	0	0	13	3	18.75
AHI1	0	genome.wustl.edu	37	6	135778714	135778714	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	135778714	135778714	A	G	SNP	AHI1	ENST00000265602	human	ensembl	74_37	-1	known	missense	c.1069	p.S357P	1.000	NULL	pfam_WD40_repeat,pfam_SH3_domain,pfam_SH3_2,superfamily_WD40_repeat_dom,superfamily_SH3_domain,smart_WD40_repeat,smart_SH3_domain,pfscan_SH3_domain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_SH3_domain	-	no_errors	AHI1	HGNC	ENSG00000135541				107	0	0	86	6	6.52174
SIRT5	0	genome.wustl.edu	37	6	13588569	13588569	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	13588569	13588569	C	G	SNP	SIRT5	ENST00000606117	human	ensembl	74_37	+1	known	missense	c.122	p.A41G	0.998	pfscan_Ssirtuin_cat_dom	pfam_Sirtuin,pfscan_Ssirtuin_cat_dom	-	no_errors	SIRT5	HGNC	ENSG00000124523				69	0	0	45	4	8.16327
PDE7B	0	genome.wustl.edu	37	6	136173140	136173140	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	136173140	136173140	T	C	SNP	PDE7B	ENST00000308191	human	ensembl	74_37	+1	known	missense	c.4	p.S2P	1.000	NULL	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE7B	HGNC	ENSG00000171408				135	0	0	110	8	6.77966
RANBP9	0	genome.wustl.edu	37	6	13634706	13634706	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	13634706	13634706	G	A	SNP	RANBP9	ENST00000011619	human	ensembl	74_37	-1	known	silent	c.1752	p.S584	1.000	NULL	pfam_SPRY_rcpt,pfam_CTLH/CRA,pfam_LisH_dimerisation_subgr,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,smart_LisH_dimerisation,smart_CTLH_C,smart_CRA_dom,pfscan_B30.2/SPRY,pfscan_LisH_dimerisation,pfscan_CTLH_C	-	no_errors	RANBP9	HGNC	ENSG00000010017				103	0	0	78	9	10.3448
PDE7B	0	genome.wustl.edu	37	6	136472325	136472325	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	136472325	136472325	A	G	SNP	PDE7B	ENST00000308191	human	ensembl	74_37	+1	known	missense	c.410	p.H137R	1.000	NULL	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE7B	HGNC	ENSG00000171408				93	0	0	63	9	12.5
BCLAF1	0	genome.wustl.edu	37	6	136601001	136601001	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	136601001	136601001	C	T	SNP	BCLAF1	ENST00000531224	human	ensembl	74_37	-1	known	missense	c.4	p.G2S	1.000	NULL	NULL	-	no_errors	BCLAF1	HGNC	ENSG00000029363				65	0	0	53	3	5.35714
MAP7	0	genome.wustl.edu	37	6	136677924	136677924	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	136677924	136677924	C	T	SNP	MAP7	ENST00000454590	human	ensembl	74_37	-1	known	missense	c.1987	p.A663T	0.893	NULL	pfam_MAP7	-	no_errors	MAP7	HGNC	ENSG00000135525				88	0	0	72	5	6.49351
PEX7	0	genome.wustl.edu	37	6	137187764	137187764	+	Splice_Site	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	137187764	137187764	G	A	SNP	PEX7	ENST00000318471	human	ensembl	74_37	+1	known	splice_site	c.527-1	e6-1	1.000	-	-	-	no_errors	PEX7	HGNC	ENSG00000112357				41	0	0	33	4	10.8108
PEX7	0	genome.wustl.edu	37	6	137187813	137187813	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	137187813	137187813	T	A	SNP	PEX7	ENST00000318471	human	ensembl	74_37	+1	known	missense	c.575	p.I192N	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	PEX7	HGNC	ENSG00000112357				55	0	0	32	4	11.1111
IFNGR1	0	genome.wustl.edu	37	6	137519370	137519370	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	137519370	137519370	C	A	SNP	IFNGR1	ENST00000367739	human	ensembl	74_37	-1	known	missense	c.1268	p.S423I	0.000	NULL	pfam_Interferon_gamma_pox/mammal,pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Fibronectin_type3,prints_Interferon_gamma_rcpt_asu	-	no_errors	IFNGR1	HGNC	ENSG00000027697				62	0	0	60	7	10.4478
IFNGR1	0	genome.wustl.edu	37	6	137519722	137519722	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	137519722	137519722	A	G	SNP	IFNGR1	ENST00000367739	human	ensembl	74_37	-1	known	missense	c.916	p.S306P	0.203	pfam_Interferon_gamma_pox/mammal	pfam_Interferon_gamma_pox/mammal,pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Fibronectin_type3,prints_Interferon_gamma_rcpt_asu	-	no_errors	IFNGR1	HGNC	ENSG00000027697				74	0	0	60	6	9.09091
MCUR1	0	genome.wustl.edu	37	6	13792125	13792125	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	13792125	13792125	T	C	SNP	MCUR1	ENST00000379170	human	ensembl	74_37	-1	known	missense	c.1009	p.I337V	0.998	pfam_DUF1640	pfam_DUF1640	-	no_errors	MCUR1	HGNC	ENSG00000050393				65	0	0	56	3	5.08475
MCUR1	0	genome.wustl.edu	37	6	13802559	13802559	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	13802559	13802559	T	C	SNP	MCUR1	ENST00000379170	human	ensembl	74_37	-1	known	silent	c.555	p.A185	0.975	pfam_DUF1640	pfam_DUF1640	-	no_errors	MCUR1	HGNC	ENSG00000050393				135	0	0	106	11	9.40171
KIAA1244	0	genome.wustl.edu	37	6	138583990	138583990	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	138583990	138583990	G	A	SNP	KIAA1244	ENST00000251691	human	ensembl	74_37	+1	known	missense	c.1370	p.R457H	1.000	superfamily_ARM-type_fold	pfam_DUF1981_Sec7_assoc,superfamily_ARM-type_fold,superfamily_Sec7_dom,smart_Sec7_dom	-	no_errors	KIAA1244	HGNC	ENSG00000112379				40	0	0	36	8	18.1818
ECT2L	0	genome.wustl.edu	37	6	139203916	139203916	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	139203916	139203916	G	A	SNP	ECT2L	ENST00000367682	human	ensembl	74_37	+1	known	missense	c.1936	p.V646M	0.951	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_F-box_dom,superfamily_DH-domain,superfamily_F-box_dom,smart_DH-domain,pfscan_DH-domain	-	no_errors	ECT2L	HGNC	ENSG00000203734				69	0	0	61	8	11.5942
HECA	0	genome.wustl.edu	37	6	139487472	139487472	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	139487472	139487472	T	C	SNP	HECA	ENST00000367658	human	ensembl	74_37	+1	known	missense	c.323	p.L108P	1.000	NULL	superfamily_Glycoside_hydrolase_SF	-	no_errors	HECA	HGNC	ENSG00000112406				110	0	0	103	11	9.64912
TXLNB	0	genome.wustl.edu	37	6	139591760	139591760	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	139591760	139591760	C	T	SNP	TXLNB	ENST00000358430	human	ensembl	74_37	-1	known	missense	c.520	p.D174N	1.000	pfam_Taxilin_fam	pfam_Taxilin_fam	-	no_errors	TXLNB	HGNC	ENSG00000164440				45	0	0	46	5	9.80392
NMBR	0	genome.wustl.edu	37	6	142397169	142397169	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	142397169	142397169	G	A	SNP	NMBR	ENST00000258042	human	ensembl	74_37	-1	known	silent	c.789	p.R263	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_Bombsn_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_NeuroB_rcpt,prints_Bombsn_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	NMBR	HGNC	ENSG00000135577				60	0	0	39	3	7.14286
GPR126	0	genome.wustl.edu	37	6	142714119	142714119	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	142714119	142714119	T	G	SNP	GPR126	ENST00000367609	human	ensembl	74_37	+1	known	missense	c.1343	p.V448G	1.000	NULL	pfam_GPCR_2_secretin-like,pfam_CUB_dom,pfam_GPS_dom,pfam_Pentaxin,superfamily_CUB_dom,superfamily_ConA-like_lec_gl_sf,smart_CUB_dom,smart_Pentaxin,smart_GPS_dom,pfscan_CUB_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR126	HGNC	ENSG00000112414				96	0	0	50	12	19.3548
GPR126	0	genome.wustl.edu	37	6	142741057	142741057	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	142741057	142741057	G	A	SNP	GPR126	ENST00000367609	human	ensembl	74_37	+1	known	silent	c.3135	p.V1045	1.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_secretin-like,pfam_CUB_dom,pfam_GPS_dom,pfam_Pentaxin,superfamily_CUB_dom,superfamily_ConA-like_lec_gl_sf,smart_CUB_dom,smart_Pentaxin,smart_GPS_dom,pfscan_CUB_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR126	HGNC	ENSG00000112414				175	0	0	137	36	20.8092
GPR126	0	genome.wustl.edu	37	6	142764510	142764510	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	142764510	142764510	C	T	SNP	GPR126	ENST00000367609	human	ensembl	74_37	+1	known	missense	c.3611	p.A1204V	0.871	NULL	pfam_GPCR_2_secretin-like,pfam_CUB_dom,pfam_GPS_dom,pfam_Pentaxin,superfamily_CUB_dom,superfamily_ConA-like_lec_gl_sf,smart_CUB_dom,smart_Pentaxin,smart_GPS_dom,pfscan_CUB_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR126	HGNC	ENSG00000112414				250	0	0	196	45	18.6722
HIVEP2	0	genome.wustl.edu	37	6	143093789	143093789	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	143093789	143093789	T	C	SNP	HIVEP2	ENST00000012134	human	ensembl	74_37	-1	known	missense	c.2087	p.K696R	1.000	NULL	pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP2	HGNC	ENSG00000010818				170	0	0	144	23	13.7725
STX11	0	genome.wustl.edu	37	6	144507898	144507898	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	144507898	144507898	A	G	SNP	STX11	ENST00000367568	human	ensembl	74_37	+1	known	missense	c.134	p.Y45C	1.000	pfam_Syntaxin_N,superfamily_t-SNARE,smart_Syntaxin_N	pfam_T_SNARE_dom,pfam_Syntaxin_N,superfamily_t-SNARE,smart_Syntaxin_N,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	STX11	HGNC	ENSG00000135604				25	0	0	39	6	13.3333
UTRN	0	genome.wustl.edu	37	6	144750813	144750813	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	144750813	144750813	G	A	SNP	UTRN	ENST00000367545	human	ensembl	74_37	+1	known	missense	c.791	p.R264H	1.000	pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_dom,superfamily_CH-domain,superfamily_WW_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_dom,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_dom,pfscan_Znf_ZZ	-	no_errors	UTRN	HGNC	ENSG00000152818				88	0	0	63	20	24.0964
UTRN	0	genome.wustl.edu	37	6	144811253	144811253	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	144811253	144811253	T	C	SNP	UTRN	ENST00000367545	human	ensembl	74_37	+1	known	missense	c.4181	p.L1394S	1.000	pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_dom,superfamily_CH-domain,superfamily_WW_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_dom,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_dom,pfscan_Znf_ZZ	-	no_errors	UTRN	HGNC	ENSG00000152818				157	0	0	117	12	9.30233
UTRN	0	genome.wustl.edu	37	6	144835835	144835835	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	144835835	144835835	G	A	SNP	UTRN	ENST00000367545	human	ensembl	74_37	+1	known	missense	c.5123	p.R1708H	1.000	pfam_Spectrin_repeat,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_dom,superfamily_CH-domain,superfamily_WW_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_dom,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_dom,pfscan_Znf_ZZ	-	no_errors	UTRN	HGNC	ENSG00000152818				176	0	0	114	29	20.2797
UTRN	0	genome.wustl.edu	37	6	145156925	145156925	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	145156925	145156925	G	A	SNP	UTRN	ENST00000367545	human	ensembl	74_37	+1	known	silent	c.9675	p.E3225	1.000	pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_dom,superfamily_CH-domain,superfamily_WW_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_dom,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_dom,pfscan_Znf_ZZ	-	no_errors	UTRN	HGNC	ENSG00000152818				288	0	0	246	19	7.16981
FBXO30	0	genome.wustl.edu	37	6	146126254	146126254	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	146126254	146126254	A	G	SNP	FBXO30	ENST00000237281	human	ensembl	74_37	-1	known	silent	c.1288	p.L430	0.655	NULL	pfam_F-box_dom,superfamily_F-box_dom,superfamily_TRAF-like,pfscan_F-box_dom,pfscan_Znf_TRAF	-	no_errors	FBXO30	HGNC	ENSG00000118496				237	0	0	184	16	8
GRM1	0	genome.wustl.edu	37	6	146720540	146720540	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	146720540	146720540	T	C	SNP	GRM1	ENST00000282753	human	ensembl	74_37	+1	known	missense	c.2365	p.F789L	1.000	pfam_GPCR_3_C,pfscan_GPCR_3_C,prints_GPCR_3	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_Metabotropic_Glu_rcpt_Homer-bd,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3_mtglu_rcpt_1,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_5	-	no_errors	GRM1	HGNC	ENSG00000152822				128	0	0	90	14	13.4615
GRM1	0	genome.wustl.edu	37	6	146755885	146755885	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	146755885	146755885	G	A	SNP	GRM1	ENST00000282753	human	ensembl	74_37	+1	known	missense	c.3538	p.A1180T	1.000	pfam_Metabotropic_Glu_rcpt_Homer-bd,prints_GPCR_3_mtglu_rcpt_1,prints_GPCR_3_mtglu_rcpt_5	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_Metabotropic_Glu_rcpt_Homer-bd,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3_mtglu_rcpt_1,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_5	-	no_errors	GRM1	HGNC	ENSG00000152822				65	0	0	68	10	12.8205
SASH1	0	genome.wustl.edu	37	6	148854021	148854021	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	148854021	148854021	C	T	SNP	SASH1	ENST00000367467	human	ensembl	74_37	+1	known	silent	c.1653	p.Y551	1.000	pfam_rSAM/SH3_domain-containing,superfamily_SH3_domain	pfam_rSAM/SH3_domain-containing,pfam_SAM_2,pfam_SAM_type1,pfam_SH3_2,superfamily_SAM/pointed,superfamily_SH3_domain,smart_SH3_domain,smart_SAM,pfscan_SAM	-	no_errors	SASH1	HGNC	ENSG00000111961				105	0	0	89	12	11.8812
SASH1	0	genome.wustl.edu	37	6	148865704	148865704	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	148865704	148865704	G	T	SNP	SASH1	ENST00000367467	human	ensembl	74_37	+1	known	missense	c.3098	p.S1033I	0.006	NULL	pfam_rSAM/SH3_domain-containing,pfam_SAM_2,pfam_SAM_type1,pfam_SH3_2,superfamily_SAM/pointed,superfamily_SH3_domain,smart_SH3_domain,smart_SAM,pfscan_SAM	-	no_errors	SASH1	HGNC	ENSG00000111961				32	0	0	40	3	6.97674
SASH1	0	genome.wustl.edu	37	6	148865849	148865849	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	148865849	148865849	G	C	SNP	SASH1	ENST00000367467	human	ensembl	74_37	+1	known	missense	c.3243	p.L1081F	0.223	NULL	pfam_rSAM/SH3_domain-containing,pfam_SAM_2,pfam_SAM_type1,pfam_SH3_2,superfamily_SAM/pointed,superfamily_SH3_domain,smart_SH3_domain,smart_SAM,pfscan_SAM	-	no_errors	SASH1	HGNC	ENSG00000111961				20	0	0	13	4	23.5294
UST	0	genome.wustl.edu	37	6	149340278	149340278	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	149340278	149340278	A	G	SNP	UST	ENST00000367463	human	ensembl	74_37	+1	known	missense	c.685	p.I229V	1.000	pfam_Sulfotransferase,pfam_Gal-3-0_sulfotransfrase,superfamily_P-loop_NTPase	pfam_Sulfotransferase,pfam_Gal-3-0_sulfotransfrase,superfamily_P-loop_NTPase	-	no_errors	UST	HGNC	ENSG00000111962				108	0	0	73	6	7.59494
TAB2	0	genome.wustl.edu	37	6	149699487	149699487	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	149699487	149699487	T	C	SNP	TAB2	ENST00000286332	human	ensembl	74_37	+1	known	missense	c.436	p.S146P	0.993	NULL	pfam_CUE,pfam_Znf_RanBP2,smart_CUE,smart_Znf_RanBP2,pfscan_CUE,pfscan_Znf_RanBP2	-	no_errors	TAB2	HGNC	ENSG00000055208				84	0	0	60	6	9.09091
TAB2	0	genome.wustl.edu	37	6	149699659	149699659	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	149699659	149699659	C	T	SNP	TAB2	ENST00000286332	human	ensembl	74_37	+1	known	missense	c.608	p.P203L	1.000	NULL	pfam_CUE,pfam_Znf_RanBP2,smart_CUE,smart_Znf_RanBP2,pfscan_CUE,pfscan_Znf_RanBP2	-	no_errors	TAB2	HGNC	ENSG00000055208				136	0	0	138	8	5.47945
TAB2	0	genome.wustl.edu	37	6	149700267	149700267	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	149700267	149700267	A	G	SNP	TAB2	ENST00000286332	human	ensembl	74_37	+1	known	missense	c.1216	p.T406A	1.000	NULL	pfam_CUE,pfam_Znf_RanBP2,smart_CUE,smart_Znf_RanBP2,pfscan_CUE,pfscan_Znf_RanBP2	-	no_errors	TAB2	HGNC	ENSG00000055208				72	0	0	68	8	10.5263
GINM1	0	genome.wustl.edu	37	6	149900053	149900053	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	149900053	149900053	T	C	SNP	GINM1	ENST00000367419	human	ensembl	74_37	+1	known	missense	c.373	p.S125P	0.998	NULL	NULL	-	no_errors	GINM1	HGNC	ENSG00000055211				78	0	0	55	4	6.77966
KATNA1	0	genome.wustl.edu	37	6	149924471	149924471	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	149924471	149924471	A	G	SNP	KATNA1	ENST00000335647	human	ensembl	74_37	-1	known	missense	c.662	p.L221P	1.000	superfamily_P-loop_NTPase	pfam_ATPase_AAA_core,pfam_Vps4_C,pfam_ATPase_AAA-2,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	KATNA1	HGNC	ENSG00000186625				66	0	0	55	6	9.83607
KATNA1	0	genome.wustl.edu	37	6	149944357	149944357	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	149944357	149944357	T	C	SNP	KATNA1	ENST00000335647	human	ensembl	74_37	-1	known	missense	c.383	p.N128S	1.000	NULL	pfam_ATPase_AAA_core,pfam_Vps4_C,pfam_ATPase_AAA-2,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	KATNA1	HGNC	ENSG00000186625				106	0	0	102	15	12.8205
LATS1	0	genome.wustl.edu	37	6	150001570	150001570	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	150001570	150001570	C	A	SNP	LATS1	ENST00000253339	human	ensembl	74_37	-1	known	missense	c.2034	p.Q678H	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,pfam_UBA/Ts_N,superfamily_Kinase-like_dom,superfamily_UBA-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom	-	no_errors	LATS1	HGNC	ENSG00000131023				166	0	0	100	6	5.66038
RAET1E	0	genome.wustl.edu	37	6	150211123	150211123	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	150211123	150211123	T	C	SNP	RAET1E	ENST00000357183	human	ensembl	74_37	-1	known	missense	c.244	p.Y82D	0.002	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	-	no_errors	RAET1E	HGNC	ENSG00000164520				77	0	0	88	11	11.1111
IYD	0	genome.wustl.edu	37	6	150713543	150713543	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	150713543	150713543	G	A	SNP	IYD	ENST00000229447	human	ensembl	74_37	+1	known	missense	c.433	p.V145M	0.000	pfam_Nitroreductase-like,superfamily_Nitroreductase-like	pfam_Nitroreductase-like,superfamily_Nitroreductase-like	-	no_errors	IYD	HGNC	ENSG00000009765				114	0	0	78	29	27.1028
MTHFD1L	0	genome.wustl.edu	37	6	151270190	151270190	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	151270190	151270190	T	C	SNP	MTHFD1L	ENST00000367321	human	ensembl	74_37	+1	known	silent	c.1647	p.D549	0.981	pfam_Formate_THF_ligase,superfamily_P-loop_NTPase	pfam_Formate_THF_ligase,pfam_THF_DH/CycHdrlase_NAD-bd_dom,pfam_THF_DH/CycHdrlase_cat_dom,superfamily_P-loop_NTPase,prints_THF_DH/CycHdrlase	-	no_errors	MTHFD1L	HGNC	ENSG00000120254				68	0	0	63	5	7.35294
MTHFD1L	0	genome.wustl.edu	37	6	151331062	151331062	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	151331062	151331062	C	T	SNP	MTHFD1L	ENST00000367321	human	ensembl	74_37	+1	known	nonsense	c.2233	p.R745*	1.000	pfam_Formate_THF_ligase,superfamily_P-loop_NTPase	pfam_Formate_THF_ligase,pfam_THF_DH/CycHdrlase_NAD-bd_dom,pfam_THF_DH/CycHdrlase_cat_dom,superfamily_P-loop_NTPase,prints_THF_DH/CycHdrlase	-	no_errors	MTHFD1L	HGNC	ENSG00000120254				106	0	0	94	7	6.93069
ZBTB2	0	genome.wustl.edu	37	6	151687891	151687891	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	151687891	151687891	C	T	SNP	ZBTB2	ENST00000325144	human	ensembl	74_37	-1	known	missense	c.310	p.A104T	1.000	superfamily_BTB/POZ_fold,smart_BTB/POZ-like	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB2	HGNC	ENSG00000181472				127	0	0	114	8	6.55738
C6orf211	0	genome.wustl.edu	37	6	151790133	151790133	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	151790133	151790133	C	T	SNP	C6orf211	ENST00000367294	human	ensembl	74_37	+1	known	missense	c.1214	p.A405V	0.969	pfam_DUF89,superfamily_DUF89	pfam_DUF89,superfamily_DUF89	-	no_errors	C6orf211	HGNC	ENSG00000146476				68	0	0	62	7	10.1449
CCDC170	0	genome.wustl.edu	37	6	151869554	151869554	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	151869554	151869554	T	C	SNP	CCDC170	ENST00000367290	human	ensembl	74_37	+1	known	missense	c.704	p.L235P	1.000	NULL	superfamily_Prefoldin,superfamily_Smac_DIABLO-like	-	no_errors	CCDC170	HGNC	ENSG00000120262				52	0	0	49	5	9.25926
ESR1	0	genome.wustl.edu	37	6	152415579	152415579	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	152415579	152415579	C	T	SNP	ESR1	ENST00000206249	human	ensembl	74_37	+1	known	nonsense	c.1429	p.R477*	0.907	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core	pfam_Oestr_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Oestr_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	ESR1	HGNC	ENSG00000091831				116	0	0	108	19	14.9606
SYNE1	0	genome.wustl.edu	37	6	152453334	152453334	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	152453334	152453334	A	T	SNP	SYNE1	ENST00000265368	human	ensembl	74_37	-1	known	missense	c.26017	p.S8673T	1.000	NULL	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018				130	0	0	121	13	9.70149
SYNE1	0	genome.wustl.edu	37	6	152473104	152473104	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	152473104	152473104	C	T	SNP	SYNE1	ENST00000265368	human	ensembl	74_37	-1	known	missense	c.24302	p.R8101H	1.000	superfamily_ABC1_TM_dom,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018				44	0	0	31	4	11.4286
SYNE1	0	genome.wustl.edu	37	6	152558018	152558018	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	152558018	152558018	G	A	SNP	SYNE1	ENST00000265368	human	ensembl	74_37	-1	known	silent	c.20133	p.S6711	0.996	superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018				70	0	0	50	10	16.6667
SYNE1	0	genome.wustl.edu	37	6	152599230	152599230	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	152599230	152599230	G	A	SNP	SYNE1	ENST00000265368	human	ensembl	74_37	-1	known	silent	c.18567	p.N6189	1.000	superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018				138	0	0	111	43	27.9221
SYNE1	0	genome.wustl.edu	37	6	152652942	152652942	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	152652942	152652942	T	C	SNP	SYNE1	ENST00000265368	human	ensembl	74_37	-1	known	missense	c.12878	p.E4293G	0.997	superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018				100	0	0	96	8	7.69231
SYNE1	0	genome.wustl.edu	37	6	152771937	152771937	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	152771937	152771937	A	T	SNP	SYNE1	ENST00000265368	human	ensembl	74_37	-1	known	missense	c.3218	p.L1073H	0.767	superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018				179	0	0	169	14	7.65027
MYCT1	0	genome.wustl.edu	37	6	153043137	153043137	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	153043137	153043137	G	T	SNP	MYCT1	ENST00000367245	human	ensembl	74_37	+1	known	missense	c.457	p.A153S	0.591	NULL	NULL	-	no_errors	MYCT1	HGNC	ENSG00000120279				111	0	0	102	7	6.42202
FBXO5	0	genome.wustl.edu	37	6	153293537	153293537	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	153293537	153293537	A	C	SNP	FBXO5	ENST00000229758	human	ensembl	74_37	-1	known	missense	c.962	p.F321C	0.331	NULL	pfam_F-box_dom,superfamily_F-box_dom	-	no_errors	FBXO5	HGNC	ENSG00000112029				142	0	0	74	14	15.9091
MTRF1L	0	genome.wustl.edu	37	6	153312324	153312324	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	153312324	153312324	A	T	SNP	MTRF1L	ENST00000367233	human	ensembl	74_37	-1	known	missense	c.938	p.I313N	1.000	pfam_Pep_chain_release_fac_I_II	pfam_Pep_chain_release_fac_I_II,pfam_PCRF,smart_PCRF	-	no_errors	MTRF1L	HGNC	ENSG00000112031				19	0	0	9	3	25
OPRM1	0	genome.wustl.edu	37	6	154360916	154360916	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	154360916	154360916	C	T	SNP	OPRM1	ENST00000434900	human	ensembl	74_37	+1	known	silent	c.516	p.I172	1.000	pfam_7TM_GPCR_serpentine_rcpt_Srx,prints_GPCR_Rhodpsn,prints_Somatstn_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Mu_opioid_rcpt,prints_GPCR_Rhodpsn,prints_Opioid_rcpt,prints_Somatstn_rcpt,prints_Neuropept_B/W_rcpt,prints_NPY_rcpt	-	no_errors	OPRM1	HGNC	ENSG00000112038				58	0	0	57	15	20.8333
OPRM1	0	genome.wustl.edu	37	6	154414463	154414463	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	154414463	154414463	A	G	SNP	OPRM1	ENST00000229768	human	ensembl	74_37	+1	known	missense	c.1223	p.Y408C	0.000	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Mu_opioid_rcpt,prints_GPCR_Rhodpsn,prints_Opioid_rcpt,prints_Somatstn_rcpt,prints_Neuropept_B/W_rcpt,prints_NPY_rcpt	-	no_errors	OPRM1	HGNC	ENSG00000112038				231	1	0.431034	215	13	5.70175
JARID2	0	genome.wustl.edu	37	6	15496890	15496890	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	15496890	15496890	A	G	SNP	JARID2	ENST00000341776	human	ensembl	74_37	+1	known	silent	c.1434	p.R478	0.028	NULL	pfam_JmjC_dom,pfam_ARID/BRIGHT_DNA-bd,pfam_TF_JmjN,pfam_Znf_C5HC2,superfamily_ARID/BRIGHT_DNA-bd,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	JARID2	HGNC	ENSG00000008083				45	0	0	29	5	14.7059
JARID2	0	genome.wustl.edu	37	6	15497032	15497032	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	15497032	15497032	T	A	SNP	JARID2	ENST00000341776	human	ensembl	74_37	+1	known	missense	c.1576	p.S526T	1.000	NULL	pfam_JmjC_dom,pfam_ARID/BRIGHT_DNA-bd,pfam_TF_JmjN,pfam_Znf_C5HC2,superfamily_ARID/BRIGHT_DNA-bd,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	JARID2	HGNC	ENSG00000008083				33	0	0	22	2	8.33333
JARID2	0	genome.wustl.edu	37	6	15501302	15501302	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	15501302	15501302	T	C	SNP	JARID2	ENST00000341776	human	ensembl	74_37	+1	known	missense	c.2110	p.Y704H	1.000	pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	pfam_JmjC_dom,pfam_ARID/BRIGHT_DNA-bd,pfam_TF_JmjN,pfam_Znf_C5HC2,superfamily_ARID/BRIGHT_DNA-bd,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	JARID2	HGNC	ENSG00000008083				67	0	0	86	5	5.49451
SCAF8	0	genome.wustl.edu	37	6	155113964	155113964	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	155113964	155113964	T	C	SNP	SCAF8	ENST00000367186	human	ensembl	74_37	+1	known	missense	c.527	p.I176T	1.000	pfam_RNA_pol_II-bd,superfamily_ENTH_VHS,smart_CID_dom	pfam_RNA_pol_II-bd,pfam_RRM_dom,superfamily_ENTH_VHS,smart_CID_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	SCAF8	HGNC	ENSG00000213079				68	0	0	46	6	11.5385
JARID2	0	genome.wustl.edu	37	6	15512570	15512570	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	15512570	15512570	C	T	SNP	JARID2	ENST00000341776	human	ensembl	74_37	+1	known	silent	c.3084	p.T1028	0.910	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	pfam_JmjC_dom,pfam_ARID/BRIGHT_DNA-bd,pfam_TF_JmjN,pfam_Znf_C5HC2,superfamily_ARID/BRIGHT_DNA-bd,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	JARID2	HGNC	ENSG00000008083				127	0	0	117	13	10
SCAF8	0	genome.wustl.edu	37	6	155153655	155153655	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	155153655	155153655	G	T	SNP	SCAF8	ENST00000367186	human	ensembl	74_37	+1	known	missense	c.3140	p.R1047I	1.000	NULL	pfam_RNA_pol_II-bd,pfam_RRM_dom,superfamily_ENTH_VHS,smart_CID_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	SCAF8	HGNC	ENSG00000213079				172	0	0	157	14	8.18713
DTNBP1	0	genome.wustl.edu	37	6	15523311	15523311	+	Silent	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	15523311	15523311	G	T	SNP	DTNBP1	ENST00000355917	human	ensembl	74_37	-1	known	silent	c.954	p.P318	0.147	pfam_Dysbindin	pfam_Dysbindin,superfamily_Trp_syn_b_sub_like_PLP_eny_SF	-	no_errors	DTNBP1	HGNC	ENSG00000047579				103	0	0	108	8	6.89655
TIAM2	0	genome.wustl.edu	37	6	155503432	155503432	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	155503432	155503432	A	G	SNP	TIAM2	ENST00000456144	human	ensembl	74_37	+1	known	missense	c.2780	p.D927G	0.163	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,superfamily_HR1_rho-bd,smart_Pleckstrin_homology,smart_Raf-like_ras-bd,smart_PDZ,smart_DH-domain,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Raf-like_ras-bd,pfscan_DH-domain	-	no_errors	TIAM2	HGNC	ENSG00000146426				103	0	0	88	6	6.38298
TIAM2	0	genome.wustl.edu	37	6	155577773	155577773	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	155577773	155577773	A	G	SNP	TIAM2	ENST00000456144	human	ensembl	74_37	+1	known	missense	c.4711	p.K1571E	0.018	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,superfamily_HR1_rho-bd,smart_Pleckstrin_homology,smart_Raf-like_ras-bd,smart_PDZ,smart_DH-domain,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Raf-like_ras-bd,pfscan_DH-domain	-	no_errors	TIAM2	HGNC	ENSG00000146426				32	0	0	30	9	23.0769
ARID1B	0	genome.wustl.edu	37	6	157495225	157495225	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	157495225	157495225	A	G	SNP	ARID1B	ENST00000367148	human	ensembl	74_37	+1	known	missense	c.3070	p.T1024A	0.002	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1B	HGNC	ENSG00000049618				59	0	0	47	6	11.3208
TMEM242	0	genome.wustl.edu	37	6	157714011	157714011	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	157714011	157714011	T	G	SNP	TMEM242	ENST00000400788	human	ensembl	74_37	-1	known	missense	c.348	p.K116N	1.000	pfam_DUF1358	pfam_DUF1358	-	no_errors	TMEM242	HGNC	ENSG00000215712				154	0	0	124	13	9.48905
TULP4	0	genome.wustl.edu	37	6	158873219	158873219	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	158873219	158873219	G	A	SNP	TULP4	ENST00000367097	human	ensembl	74_37	+1	known	missense	c.778	p.V260I	1.000	superfamily_WD40_repeat_dom	pfam_Tubby_C,pfam_SOCS_C,pfam_WD40_repeat,superfamily_Tubby_C-like,superfamily_WD40_repeat_dom,superfamily_Tumour_necrosis_fac-like_dom,smart_WD40_repeat,smart_SOCS_C,pfscan_SOCS_C,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TULP4	HGNC	ENSG00000130338				123	0	0	147	8	5.16129
TULP4	0	genome.wustl.edu	37	6	158925039	158925039	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	158925039	158925039	G	A	SNP	TULP4	ENST00000367097	human	ensembl	74_37	+1	known	silent	c.4344	p.R1448	0.974	NULL	pfam_Tubby_C,pfam_SOCS_C,pfam_WD40_repeat,superfamily_Tubby_C-like,superfamily_WD40_repeat_dom,superfamily_Tumour_necrosis_fac-like_dom,smart_WD40_repeat,smart_SOCS_C,pfscan_SOCS_C,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TULP4	HGNC	ENSG00000130338				24	0	0	24	5	17.2414
FNDC1	0	genome.wustl.edu	37	6	159653499	159653499	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	159653499	159653499	G	A	SNP	FNDC1	ENST00000297267	human	ensembl	74_37	+1	known	missense	c.1955	p.R652H	0.000	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	FNDC1	HGNC	ENSG00000164694				58	0	0	51	14	21.5385
FNDC1	0	genome.wustl.edu	37	6	159654614	159654614	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	159654614	159654614	G	A	SNP	FNDC1	ENST00000297267	human	ensembl	74_37	+1	known	missense	c.3070	p.A1024T	0.000	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	FNDC1	HGNC	ENSG00000164694				11	0	0	6	4	40
MRPL18	0	genome.wustl.edu	37	6	160219095	160219095	+	Silent	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	160219095	160219095	A	T	SNP	MRPL18	ENST00000367034	human	ensembl	74_37	+1	known	silent	c.483	p.L161	0.001	NULL	pfam_Ribosomal_L18/L5	-	no_errors	MRPL18	HGNC	ENSG00000112110				56	0	0	26	13	33.3333
PNLDC1	0	genome.wustl.edu	37	6	160221765	160221765	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	160221765	160221765	T	A	SNP	PNLDC1	ENST00000610273	human	ensembl	74_37	+1	known	missense	c.5	p.F2Y	0.001	NULL	pfam_RNase_CAF1,superfamily_RNaseH-like_dom	-	no_errors	PNLDC1	HGNC	ENSG00000146453				195	0	0	161	12	6.93642
MAS1	0	genome.wustl.edu	37	6	160328535	160328535	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	160328535	160328535	A	T	SNP	MAS1	ENST00000252660	human	ensembl	74_37	+1	known	missense	c.548	p.D183V	0.573	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Proto-oncogene_Mas	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Proto-oncogene_Mas,prints_GPCR_Rhodpsn	-	no_errors	MAS1	HGNC	ENSG00000130368				119	0	0	105	10	8.69565
IGF2R	0	genome.wustl.edu	37	6	160469473	160469473	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	160469473	160469473	C	T	SNP	IGF2R	ENST00000356956	human	ensembl	74_37	+1	known	silent	c.2412	p.V804	0.026	pfam_CIMR,superfamily_Man6P_isomerase_rcpt-bd_dom	pfam_CIMR,pfam_FN_type2_col-bd,superfamily_Man6P_isomerase_rcpt-bd_dom,superfamily_Kringle-like,smart_FN_type2_col-bd,pfscan_FN_type2_col-bd	-	no_errors	IGF2R	HGNC	ENSG00000197081				68	0	0	46	4	8
IGF2R	0	genome.wustl.edu	37	6	160482540	160482540	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	160482540	160482540	G	A	SNP	IGF2R	ENST00000356956	human	ensembl	74_37	+1	known	missense	c.3268	p.A1090T	0.402	pfam_CIMR,superfamily_Man6P_isomerase_rcpt-bd_dom	pfam_CIMR,pfam_FN_type2_col-bd,superfamily_Man6P_isomerase_rcpt-bd_dom,superfamily_Kringle-like,smart_FN_type2_col-bd,pfscan_FN_type2_col-bd	-	no_errors	IGF2R	HGNC	ENSG00000197081				149	0	0	138	8	5.47945
IGF2R	0	genome.wustl.edu	37	6	160484579	160484579	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	160484579	160484579	A	T	SNP	IGF2R	ENST00000356956	human	ensembl	74_37	+1	known	missense	c.3803	p.D1268V	0.000	pfam_CIMR,superfamily_Man6P_isomerase_rcpt-bd_dom	pfam_CIMR,pfam_FN_type2_col-bd,superfamily_Man6P_isomerase_rcpt-bd_dom,superfamily_Kringle-like,smart_FN_type2_col-bd,pfscan_FN_type2_col-bd	-	no_errors	IGF2R	HGNC	ENSG00000197081				83	0	0	72	7	8.86076
LPAL2	0	genome.wustl.edu	37	6	160932122	160932122	+	RNA	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	160932122	160932122	A	G	SNP	LPAL2	ENST00000335388	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.954	-	-	-	no_errors	LPAL2	HGNC	ENSG00000213071				119	0	0	96	11	10.2804
PLG	0	genome.wustl.edu	37	6	161127481	161127481	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	161127481	161127481	C	T	SNP	PLG	ENST00000308192	human	ensembl	74_37	+1	known	missense	c.92	p.A31V	0.768	pirsf_Pept_S1A_plasmin,pfam_PAN-1_domain,smart_Pan_app,pfscan_Pan_app	pirsf_Pept_S1A_plasmin,pfam_Kringle,pfam_Peptidase_S1,pfam_PAN-1_domain,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,superfamily_Kringle-like,smart_Pan_app,smart_Kringle,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_Pan_app,pfscan_Kringle,pfscan_Peptidase_S1	-	no_errors	PLG	HGNC	ENSG00000122194				147	0	0	121	12	9.02256
PARK2	0	genome.wustl.edu	37	6	161781224	161781224	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	161781224	161781224	T	C	SNP	PARK2	ENST00000366898	human	ensembl	74_37	-1	known	missense	c.1181	p.D394G	0.448	pirsf_Parkin	pfam_Ubiquitin_dom,pfam_Znf_C6HC,pfam_Rad60/SUMO_like,smart_Ubiquitin_dom,smart_Znf_C6HC,pirsf_Parkin,pfscan_Ubiquitin_supergroup,prints_Parkin,prints_Ubiquitin	-	no_errors	PARK2	HGNC	ENSG00000185345				111	0	0	103	6	5.50459
GMPR	0	genome.wustl.edu	37	6	16279053	16279053	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	16279053	16279053	T	C	SNP	GMPR	ENST00000259727	human	ensembl	74_37	+1	known	missense	c.586	p.Y196H	1.000	pfam_IMP_DH_GMPRt,pirsf_GMP_reduct1,tigrfam_GMP_reduct1	pfam_IMP_DH_GMPRt,pirsf_GMP_reduct1,tigrfam_GMP_reduct1	-	no_errors	GMPR	HGNC	ENSG00000137198				73	0	0	67	9	11.8421
ATXN1	0	genome.wustl.edu	37	6	16307007	16307007	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	16307007	16307007	C	T	SNP	ATXN1	ENST00000244769	human	ensembl	74_37	-1	known	silent	c.2001	p.Q667	1.000	pfam_Ataxin-1_HBP1,superfamily_Ataxin-1_HBP1,smart_Ataxin_AXH_dom,pfscan_Ataxin-1_HBP1	pfam_Ataxin-1_HBP1,pfam_Capicua_tscrpt_rep_mod,superfamily_Ataxin-1_HBP1,smart_Ataxin_AXH_dom,pfscan_Ataxin-1_HBP1	-	no_errors	ATXN1	HGNC	ENSG00000124788				93	0	0	86	8	8.51064
C6orf118	0	genome.wustl.edu	37	6	165715755	165715755	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	165715755	165715755	G	A	SNP	C6orf118	ENST00000230301	human	ensembl	74_37	-1	known	missense	c.56	p.P19L	0.005	NULL	superfamily_Ribonuclease/ribotoxin	-	no_errors	C6orf118	HGNC	ENSG00000112539				102	0	0	73	28	27.7228
PDE10A	0	genome.wustl.edu	37	6	165806270	165806270	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	165806270	165806270	C	T	SNP	PDE10A	ENST00000539869	human	ensembl	74_37	-1	known	silent	c.1521	p.K507	1.000	NULL	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE10A	HGNC	ENSG00000112541				92	0	0	62	4	6.06061
MPC1	0	genome.wustl.edu	37	6	166779545	166779545	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	166779545	166779545	C	T	SNP	MPC1	ENST00000341756	human	ensembl	74_37	-1	known	silent	c.222	p.Q74	1.000	pfam_MPC	pfam_MPC	-	no_errors	MPC1	HGNC	ENSG00000060762				72	0	0	62	5	7.46269
RPS6KA2	0	genome.wustl.edu	37	6	166902367	166902367	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	166902367	166902367	C	T	SNP	RPS6KA2	ENST00000510118	human	ensembl	74_37	-1	known	silent	c.936	p.Q312	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase_II,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	RPS6KA2	HGNC	ENSG00000071242				37	0	0	25	5	16.6667
RPS6KA2	0	genome.wustl.edu	37	6	166944731	166944731	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	166944731	166944731	G	T	SNP	RPS6KA2	ENST00000510118	human	ensembl	74_37	-1	known	missense	c.362	p.A121D	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase_II,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	RPS6KA2	HGNC	ENSG00000071242				140	0	0	123	10	7.5188
TTLL2	0	genome.wustl.edu	37	6	167754976	167754976	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	167754976	167754976	T	C	SNP	TTLL2	ENST00000239587	human	ensembl	74_37	+1	known	missense	c.1588	p.S530P	0.000	NULL	pfam_TTL/TTLL_fam	-	no_errors	TTLL2	HGNC	ENSG00000120440				94	0	0	79	7	8.13953
SMOC2	0	genome.wustl.edu	37	6	168947785	168947785	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	168947785	168947785	C	T	SNP	SMOC2	ENST00000354536	human	ensembl	74_37	+1	known	silent	c.531	p.S177	1.000	superfamily_Thyroglobulin_1	pfam_Thyroglobulin_1,pfam_SPARC/Testican_Ca-bd-dom,pfam_Kazal_dom,superfamily_Thyroglobulin_1,smart_Kazal_dom,smart_Thyroglobulin_1,pfscan_EF_hand_dom,pfscan_Thyroglobulin_1	-	no_errors	SMOC2	HGNC	ENSG00000112562				149	0	0	131	9	6.42857
SMOC2	0	genome.wustl.edu	37	6	168999591	168999591	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	168999591	168999591	G	A	SNP	SMOC2	ENST00000354536	human	ensembl	74_37	+1	known	missense	c.764	p.G255D	1.000	pfam_Thyroglobulin_1,superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,pfscan_Thyroglobulin_1	pfam_Thyroglobulin_1,pfam_SPARC/Testican_Ca-bd-dom,pfam_Kazal_dom,superfamily_Thyroglobulin_1,smart_Kazal_dom,smart_Thyroglobulin_1,pfscan_EF_hand_dom,pfscan_Thyroglobulin_1	-	no_errors	SMOC2	HGNC	ENSG00000112562				19	0	0	21	5	19.2308
SMOC2	0	genome.wustl.edu	37	6	169053890	169053890	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	169053890	169053890	G	A	SNP	SMOC2	ENST00000354536	human	ensembl	74_37	+1	known	missense	c.1300	p.D434N	0.000	NULL	pfam_Thyroglobulin_1,pfam_SPARC/Testican_Ca-bd-dom,pfam_Kazal_dom,superfamily_Thyroglobulin_1,smart_Kazal_dom,smart_Thyroglobulin_1,pfscan_EF_hand_dom,pfscan_Thyroglobulin_1	-	no_errors	SMOC2	HGNC	ENSG00000112562				55	0	0	45	12	21.0526
THBS2	0	genome.wustl.edu	37	6	169625300	169625300	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	169625300	169625300	C	T	SNP	THBS2	ENST00000366787	human	ensembl	74_37	-1	known	missense	c.2713	p.V905I	0.002	pfam_Thrombospondin_3-like_rpt	pfam_Thrombospondin_C,pfam_Thrombospondin_1_rpt,pfam_VWF_C,pfam_Thrombospondin_3-like_rpt,pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Thrombospondin_1_rpt,smart_Laminin_G,smart_VWF_C,smart_Thrombospondin_1_rpt,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Thrombospondin_1_rpt,pfscan_VWF_C	-	no_errors	THBS2	HGNC	ENSG00000186340				49	0	0	48	6	11.1111
TCTE3	0	genome.wustl.edu	37	6	170151476	170151476	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	170151476	170151476	G	A	SNP	TCTE3	ENST00000366774	human	ensembl	74_37	-1	known	missense	c.79	p.P27S	0.000	NULL	pfam_Tctex	-	no_errors	TCTE3	HGNC	ENSG00000184786				131	0	0	107	10	8.54701
ERMARD	0	genome.wustl.edu	37	6	170176102	170176102	+	Nonsense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	170176102	170176102	T	A	SNP	ERMARD	ENST00000366773	human	ensembl	74_37	+1	known	nonsense	c.1461	p.Y487*	0.000	NULL	NULL	-	no_errors	ERMARD	HGNC	ENSG00000130023				97	0	0	57	4	6.55738
FAM120B	0	genome.wustl.edu	37	6	170627418	170627418	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	170627418	170627418	T	G	SNP	FAM120B	ENST00000537664	human	ensembl	74_37	+1	known	missense	c.1009	p.F337V	0.986	NULL	NULL	-	no_errors	FAM120B	HGNC	ENSG00000112584				113	1	0.877193	82	7	7.86517
NUP153	0	genome.wustl.edu	37	6	17626268	17626268	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	17626268	17626268	A	G	SNP	NUP153	ENST00000537253	human	ensembl	74_37	-1	known	silent	c.3765	p.A1255	0.539	NULL	pfam_Nucleoporin_Nup153,pfam_Znf_RanBP2,pfam_Retro-transposon_transp_CS,smart_Znf_RanBP2,pfscan_Znf_RanBP2	-	no_errors	NUP153	HGNC	ENSG00000124789				72	0	0	50	10	16.6667
NUP153	0	genome.wustl.edu	37	6	17632925	17632925	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	17632925	17632925	A	G	SNP	NUP153	ENST00000537253	human	ensembl	74_37	-1	known	missense	c.2708	p.L903S	0.660	pfam_Znf_RanBP2,smart_Znf_RanBP2,pfscan_Znf_RanBP2	pfam_Nucleoporin_Nup153,pfam_Znf_RanBP2,pfam_Retro-transposon_transp_CS,smart_Znf_RanBP2,pfscan_Znf_RanBP2	-	no_errors	NUP153	HGNC	ENSG00000124789				127	0	0	107	10	8.54701
NUP153	0	genome.wustl.edu	37	6	17637492	17637492	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	17637492	17637492	A	C	SNP	NUP153	ENST00000537253	human	ensembl	74_37	-1	known	missense	c.2449	p.F817V	1.000	NULL	pfam_Nucleoporin_Nup153,pfam_Znf_RanBP2,pfam_Retro-transposon_transp_CS,smart_Znf_RanBP2,pfscan_Znf_RanBP2	-	no_errors	NUP153	HGNC	ENSG00000124789				107	0	0	87	10	10.3093
NUP153	0	genome.wustl.edu	37	6	17637537	17637537	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	17637537	17637537	T	A	SNP	NUP153	ENST00000537253	human	ensembl	74_37	-1	known	missense	c.2404	p.T802S	0.044	NULL	pfam_Nucleoporin_Nup153,pfam_Znf_RanBP2,pfam_Retro-transposon_transp_CS,smart_Znf_RanBP2,pfscan_Znf_RanBP2	-	no_errors	NUP153	HGNC	ENSG00000124789				125	0	0	95	9	8.65385
KIF13A	0	genome.wustl.edu	37	6	17764724	17764724	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	17764724	17764724	T	C	SNP	KIF13A	ENST00000259711	human	ensembl	74_37	-1	known	missense	c.5035	p.S1679G	0.999	NULL	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_KIF1B,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF13A	HGNC	ENSG00000137177				97	0	0	77	7	8.33333
NHLRC1	0	genome.wustl.edu	37	6	18122144	18122144	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	18122144	18122144	T	C	SNP	NHLRC1	ENST00000340650	human	ensembl	74_37	-1	known	missense	c.694	p.T232A	0.444	pfscan_NHL_repeat_subgr	smart_Znf_RING,pfscan_NHL_repeat_subgr,pfscan_Znf_RING	-	no_errors	NHLRC1	HGNC	ENSG00000187566				43	0	0	46	5	9.80392
KDM1B	0	genome.wustl.edu	37	6	18217973	18217973	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	18217973	18217973	G	A	SNP	KDM1B	ENST00000388870	human	ensembl	74_37	+1	known	missense	c.2245	p.D749N	1.000	pfam_Amino_oxidase	pfam_Amino_oxidase,pfam_Znf_CW,pfam_FAD-dep_OxRdtase,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_SWIRM,pfam_Pyr_OxRdtase_NAD-bd_dom,pfam_mOase_FAD-bd,pfam_CHP00275_HI0933-like,pfam_FAD_bind_dom,superfamily_Homeodomain-like,pfscan_SWIRM,pfscan_Znf_CW	-	no_errors	KDM1B	HGNC	ENSG00000165097				105	0	0	73	6	7.59494
RNF144B	0	genome.wustl.edu	37	6	18465249	18465249	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	18465249	18465249	G	A	SNP	RNF144B	ENST00000259939	human	ensembl	74_37	+1	known	missense	c.863	p.C288Y	1.000	NULL	pfam_Znf_C6HC,smart_Znf_RING,smart_Znf_C6HC	-	no_errors	RNF144B	HGNC	ENSG00000137393				44	0	0	34	6	15
E2F3	0	genome.wustl.edu	37	6	20483131	20483131	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	20483131	20483131	C	T	SNP	E2F3	ENST00000346618	human	ensembl	74_37	+1	known	silent	c.864	p.T288	0.999	NULL	pfam_E2F_TDP	-	no_errors	E2F3	HGNC	ENSG00000112242				81	0	0	74	5	6.32911
E2F3	0	genome.wustl.edu	37	6	20490487	20490487	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	20490487	20490487	G	A	SNP	E2F3	ENST00000346618	human	ensembl	74_37	+1	known	silent	c.1224	p.Q408	1.000	NULL	pfam_E2F_TDP	-	no_errors	E2F3	HGNC	ENSG00000112242				82	0	0	68	5	6.84932
DCDC2	0	genome.wustl.edu	37	6	24178771	24178771	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	24178771	24178771	A	G	SNP	DCDC2	ENST00000378454	human	ensembl	74_37	-1	known	silent	c.1113	p.G371	0.890	NULL	pfam_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	DCDC2	HGNC	ENSG00000146038				91	0	0	94	8	7.84314
GPLD1	0	genome.wustl.edu	37	6	24463015	24463015	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	24463015	24463015	T	C	SNP	GPLD1	ENST00000230036	human	ensembl	74_37	-1	known	missense	c.830	p.N277S	0.000	NULL	pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Gprt_PLipase_D	-	no_errors	GPLD1	HGNC	ENSG00000112293				127	0	0	111	7	5.9322
FAM65B	0	genome.wustl.edu	37	6	24850864	24850864	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	24850864	24850864	T	C	SNP	FAM65B	ENST00000259698	human	ensembl	74_37	-1	known	silent	c.759	p.T253	0.984	NULL	superfamily_ARM-type_fold	-	no_errors	FAM65B	HGNC	ENSG00000111913				85	0	0	60	11	15.493
LRRC16A	0	genome.wustl.edu	37	6	25600765	25600765	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	25600765	25600765	G	A	SNP	LRRC16A	ENST00000329474	human	ensembl	74_37	+1	novel	missense	c.3343	p.E1115K	0.999	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC16A	HGNC	ENSG00000079691				61	0	0	56	8	12.5
HIST1H2AA	0	genome.wustl.edu	37	6	25726369	25726369	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	25726369	25726369	T	C	SNP	HIST1H2AA	ENST00000297012	human	ensembl	74_37	-1	known	silent	c.387	p.Q129	0.025	NULL	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	-	no_errors	HIST1H2AA	HGNC	ENSG00000164508				269	0	0	231	22	8.69565
SLC17A1	0	genome.wustl.edu	37	6	25819947	25819947	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	25819947	25819947	C	T	SNP	SLC17A1	ENST00000244527	human	ensembl	74_37	-1	known	nonsense	c.404	p.W135*	0.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Pi_cotranspt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Pi_cotranspt	-	no_errors	SLC17A1	HGNC	ENSG00000124568				73	0	0	60	7	10.4478
TRIM38	0	genome.wustl.edu	37	6	25983804	25983804	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	25983804	25983804	T	A	SNP	TRIM38	ENST00000349458	human	ensembl	74_37	+1	known	missense	c.1287	p.N429K	0.000	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Znf_B-box,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM38	HGNC	ENSG00000112343				128	0	0	106	6	5.35714
HIST1H4A	0	genome.wustl.edu	37	6	26022115	26022115	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	26022115	26022115	C	T	SNP	HIST1H4A	ENST00000359907	human	ensembl	74_37	+1	known	missense	c.209	p.A70V	1.000	pfam_Histone_core_D,pfam_TAF_TATA-bd,superfamily_Histone-fold,smart_Histone_H4,smart_TAF_TATA-bd,prints_Histone_H4	pfam_Histone_core_D,pfam_TAF_TATA-bd,superfamily_Histone-fold,smart_Histone_H4,smart_TAF_TATA-bd,prints_Histone_H4	-	no_errors	HIST1H4A	HGNC	ENSG00000196176				63	0	0	62	4	6.06061
HIST1H3C	0	genome.wustl.edu	37	6	26045888	26045888	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	26045888	26045888	C	T	SNP	HIST1H3C	ENST00000540144	human	ensembl	74_37	+1	known	missense	c.250	p.R84C	1.000	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	-	no_errors	HIST1H3C	HGNC	ENSG00000196532				56	0	0	51	15	22.7273
HIST1H1C	0	genome.wustl.edu	37	6	26056483	26056483	+	Silent	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	26056483	26056483	A	T	SNP	HIST1H1C	ENST00000343677	human	ensembl	74_37	-1	known	silent	c.174	p.S58	0.025	pfam_Histone_H1/H5_H15,smart_Histone_H1/H5_H15,prints_Histone_H5	pfam_Histone_H1/H5_H15,smart_Histone_H1/H5_H15,prints_Histone_H5	-	no_errors	HIST1H1C	HGNC	ENSG00000187837				153	0	0	121	8	6.20155
HIST1H2BC	0	genome.wustl.edu	37	6	26123956	26123956	+	Silent	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	26123956	26123956	G	T	SNP	HIST1H2BC	ENST00000314332	human	ensembl	74_37	-1	known	silent	c.177	p.A59	0.998	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	HIST1H2BC	HGNC	ENSG00000180596				198	1	0.502513	182	19	9.45274
HIST1H4D	0	genome.wustl.edu	37	6	26189068	26189068	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	26189068	26189068	G	A	SNP	HIST1H4D	ENST00000340756	human	ensembl	74_37	-1	known	silent	c.237	p.R79	1.000	pfam_Histone_core_D,pfam_TAF_TATA-bd,superfamily_Histone-fold,smart_Histone_H4,smart_TAF_TATA-bd,prints_Histone_H4	pfam_Histone_core_D,pfam_TAF_TATA-bd,superfamily_Histone-fold,smart_Histone_H4,smart_TAF_TATA-bd,prints_Histone_H4	-	no_errors	HIST1H4D	HGNC	ENSG00000188987				110	0	0	75	18	19.3548
HIST1H2BF	0	genome.wustl.edu	37	6	26200153	26200153	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	26200153	26200153	A	T	SNP	HIST1H2BF	ENST00000359985	human	ensembl	74_37	+1	known	missense	c.367	p.T123S	1.000	superfamily_Histone-fold,smart_Histone_H2B	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	HIST1H2BF	HGNC	ENSG00000197846				75	0	0	52	6	10.3448
HIST1H2AE	0	genome.wustl.edu	37	6	26217403	26217403	+	Silent	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	26217403	26217403	T	A	SNP	HIST1H2AE	ENST00000303910	human	ensembl	74_37	+1	known	silent	c.201	p.A67	0.994	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	-	no_errors	HIST1H2AE	HGNC	ENSG00000168274				69	0	0	74	5	6.32911
HIST1H1D	0	genome.wustl.edu	37	6	26235016	26235016	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	26235016	26235016	A	G	SNP	HIST1H1D	ENST00000244534	human	ensembl	74_37	-1	known	missense	c.146	p.V49A	1.000	pfam_Histone_H1/H5_H15,smart_Histone_H1/H5_H15	pfam_Histone_H1/H5_H15,smart_Histone_H1/H5_H15,prints_Histone_H5	-	no_errors	HIST1H1D	HGNC	ENSG00000124575				129	0	0	122	7	5.42636
BTN2A2	0	genome.wustl.edu	37	6	26392760	26392760	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	26392760	26392760	A	G	SNP	BTN2A2	ENST00000356709	human	ensembl	74_37	+1	known	silent	c.1137	p.S379	0.848	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Ig_V-set,pfam_CD80_C2-set,superfamily_ConA-like_lec_gl_sf,smart_Ig_sub,smart_Ig_V-set_subgr,smart_PRY,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Ig-like_dom	-	no_errors	BTN2A2	HGNC	ENSG00000124508				134	0	0	92	13	12.381
BTN2A2	0	genome.wustl.edu	37	6	26393114	26393114	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	26393114	26393114	T	C	SNP	BTN2A2	ENST00000356709	human	ensembl	74_37	+1	known	silent	c.1491	p.P497	0.065	superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Ig_V-set,pfam_CD80_C2-set,superfamily_ConA-like_lec_gl_sf,smart_Ig_sub,smart_Ig_V-set_subgr,smart_PRY,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Ig-like_dom	-	no_errors	BTN2A2	HGNC	ENSG00000124508				72	0	0	63	27	30
MYLK4	0	genome.wustl.edu	37	6	2680510	2680510	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	2680510	2680510	A	G	SNP	MYLK4	ENST00000274643	human	ensembl	74_37	-1	known	missense	c.703	p.C235R	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MYLK4	HGNC	ENSG00000145949				212	0	0	176	11	5.88235
HIST1H2BM	0	genome.wustl.edu	37	6	27782898	27782898	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	27782898	27782898	A	T	SNP	HIST1H2BM	ENST00000359465	human	ensembl	74_37	+1	known	missense	c.77	p.D26V	1.000	superfamily_Histone-fold	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	HIST1H2BM	HGNC	ENSG00000196374				193	0	0	143	8	5.29801
HIST1H1B	0	genome.wustl.edu	37	6	27834982	27834982	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	27834982	27834982	T	C	SNP	HIST1H1B	ENST00000331442	human	ensembl	74_37	-1	known	missense	c.326	p.K109R	1.000	pfam_Histone_H1/H5_H15,prints_Histone_H5	pfam_Histone_H1/H5_H15,smart_Histone_H1/H5_H15,prints_Histone_H5	-	no_errors	HIST1H1B	HGNC	ENSG00000184357				191	0	0	153	20	11.5607
HIST1H1B	0	genome.wustl.edu	37	6	27835025	27835025	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	27835025	27835025	T	C	SNP	HIST1H1B	ENST00000331442	human	ensembl	74_37	-1	known	missense	c.283	p.T95A	1.000	pfam_Histone_H1/H5_H15,smart_Histone_H1/H5_H15,prints_Histone_H5	pfam_Histone_H1/H5_H15,smart_Histone_H1/H5_H15,prints_Histone_H5	-	no_errors	HIST1H1B	HGNC	ENSG00000184357				191	0	0	169	18	9.62567
OR2B2	0	genome.wustl.edu	37	6	27879120	27879120	+	Silent	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	27879120	27879120	T	G	SNP	OR2B2	ENST00000303324	human	ensembl	74_37	-1	known	silent	c.978	p.T326	0.000	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2B2	HGNC	ENSG00000168131				102	0	0	69	5	6.75676
ZNF165	0	genome.wustl.edu	37	6	28056987	28056987	+	Silent	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	28056987	28056987	C	A	SNP	ZNF165	ENST00000377325	human	ensembl	74_37	+1	known	silent	c.1197	p.P399	0.994	pfscan_Znf_C2H2	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF165	HGNC	ENSG00000197279				108	0	0	75	8	9.63855
PGBD1	0	genome.wustl.edu	37	6	28268774	28268774	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	28268774	28268774	G	T	SNP	PGBD1	ENST00000259883	human	ensembl	74_37	+1	known	missense	c.1143	p.K381N	0.028	NULL	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,pfscan_SRCR,pfscan_Tscrpt_reg_SCAN	-	no_errors	PGBD1	HGNC	ENSG00000137338				111	1	0.892857	90	7	7.21649
ZSCAN31	0	genome.wustl.edu	37	6	28294205	28294205	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	28294205	28294205	T	C	SNP	ZSCAN31	ENST00000344279	human	ensembl	74_37	-1	known	missense	c.959	p.E320G	0.999	pfscan_Znf_C2H2	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN31	HGNC	ENSG00000235109				201	0	0	193	14	6.76329
ZKSCAN3	0	genome.wustl.edu	37	6	28327716	28327716	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	28327716	28327716	T	C	SNP	ZKSCAN3	ENST00000252211	human	ensembl	74_37	+1	known	missense	c.353	p.V118A	0.061	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,pfscan_Tscrpt_reg_SCAN	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZKSCAN3	HGNC	ENSG00000189298				42	0	0	39	4	9.30233
SCAND3	0	genome.wustl.edu	37	6	28554087	28554087	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	28554087	28554087	T	A	SNP	SCAND3	ENST00000452236	human	ensembl	74_37	-1	known	missense	c.408	p.E136D	0.912	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN	pfam_Tscrpt_reg_SCAN,pfam_Integrase_cat-core,pfam_HATC_dom_C,superfamily_Retrov_capsid_C,superfamily_RNaseH-like_dom,smart_Tscrpt_reg_SCAN,pfscan_Integrase_cat-core,pfscan_Tscrpt_reg_SCAN	-	no_errors	SCAND3	HGNC	ENSG00000232040				280	0	0	230	24	9.44882
OR2J3	0	genome.wustl.edu	37	6	29079854	29079854	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	29079854	29079854	T	C	SNP	OR2J3	ENST00000377169	human	ensembl	74_37	+1	known	missense	c.187	p.Y63H	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2J3	HGNC	ENSG00000204701				221	0	0	208	17	7.55556
OR11A1	0	genome.wustl.edu	37	6	29394945	29394945	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	29394945	29394945	T	C	SNP	OR11A1	ENST00000377147	human	ensembl	74_37	-1	known	silent	c.474	p.G158	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_GPCR_Rhodpsn,prints_Olfact_rcpt,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR11A1	HGNC	ENSG00000204694				53	0	0	34	4	10.5263
SERPINB6	0	genome.wustl.edu	37	6	2954826	2954826	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	2954826	2954826	C	A	SNP	SERPINB6	ENST00000335686	human	ensembl	74_37	-1	known	missense	c.430	p.G144C	1.000	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINB6	HGNC	ENSG00000124570				107	0	0	72	6	7.69231
ZFP57	0	genome.wustl.edu	37	6	29643256	29643256	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	29643256	29643256	A	G	SNP	ZFP57	ENST00000488757	human	ensembl	74_37	-1	known	missense	c.259	p.F87L	0.045	superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZFP57	HGNC	ENSG00000204644				185	0	0	159	16	9.14286
RNF39	0	genome.wustl.edu	37	6	30043021	30043021	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	30043021	30043021	G	A	SNP	RNF39	ENST00000244360	human	ensembl	74_37	-1	known	silent	c.546	p.G182	0.847	NULL	pfam_SPRY_rcpt,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	RNF39	HGNC	ENSG00000204618				13	0	0	3	3	50
RNF39	0	genome.wustl.edu	37	6	30043550	30043550	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	30043550	30043550	A	G	SNP	RNF39	ENST00000244360	human	ensembl	74_37	-1	known	missense	c.17	p.L6S	0.000	NULL	pfam_SPRY_rcpt,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	RNF39	HGNC	ENSG00000204618				61	0	0	49	16	24.6154
HLA-L	0	genome.wustl.edu	37	6	30227765	30227765	+	RNA	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	30227765	30227765	T	C	SNP	HLA-L	ENST00000463348	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.283	-	-	-	no_errors	HLA-L	HGNC	ENSG00000243753				22	0	0	16	3	15.7895
GNL1	0	genome.wustl.edu	37	6	30514577	30514577	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	30514577	30514577	G	A	SNP	GNL1	ENST00000376621	human	ensembl	74_37	-1	known	missense	c.1478	p.A493V	0.990	NULL	pfam_GTP_binding_domain,superfamily_P-loop_NTPase	-	no_errors	GNL1	HGNC	ENSG00000204590				110	0	0	80	14	14.8936
GNL1	0	genome.wustl.edu	37	6	30523965	30523965	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	30523965	30523965	G	A	SNP	GNL1	ENST00000376621	human	ensembl	74_37	-1	known	missense	c.16	p.P6S	1.000	NULL	pfam_GTP_binding_domain,superfamily_P-loop_NTPase	-	no_errors	GNL1	HGNC	ENSG00000204590				46	0	0	51	6	10.5263
PPP1R10	0	genome.wustl.edu	37	6	30569986	30569986	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	30569986	30569986	G	A	SNP	PPP1R10	ENST00000376511	human	ensembl	74_37	-1	known	missense	c.2440	p.R814C	0.883	NULL	pfam_TFIIS_N,pfam_Znf_CCCH,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub,smart_Znf_CCCH	-	no_errors	PPP1R10	HGNC	ENSG00000204569				111	0	0	96	34	26.1538
PPP1R10	0	genome.wustl.edu	37	6	30571905	30571905	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	30571905	30571905	C	T	SNP	PPP1R10	ENST00000376511	human	ensembl	74_37	-1	known	missense	c.1388	p.C463Y	0.999	NULL	pfam_TFIIS_N,pfam_Znf_CCCH,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub,smart_Znf_CCCH	-	no_errors	PPP1R10	HGNC	ENSG00000204569				211	0	0	213	12	5.33333
PPP1R10	0	genome.wustl.edu	37	6	30572227	30572227	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	30572227	30572227	T	C	SNP	PPP1R10	ENST00000376511	human	ensembl	74_37	-1	known	silent	c.1164	p.Q388	1.000	NULL	pfam_TFIIS_N,pfam_Znf_CCCH,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub,smart_Znf_CCCH	-	no_errors	PPP1R10	HGNC	ENSG00000204569				141	0	0	111	14	11.2
MRPS18B	0	genome.wustl.edu	37	6	30587523	30587523	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	30587523	30587523	T	C	SNP	MRPS18B	ENST00000259873	human	ensembl	74_37	+1	known	silent	c.225	p.A75	1.000	NULL	pfam_Ribosomal_S18,superfamily_Ribosomal_S18	-	no_errors	MRPS18B	HGNC	ENSG00000204568				77	0	0	81	9	10
DHX16	0	genome.wustl.edu	37	6	30630513	30630513	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	30630513	30630513	A	G	SNP	DHX16	ENST00000376442	human	ensembl	74_37	-1	known	missense	c.1435	p.Y479H	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DUF1605,pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX16	HGNC	ENSG00000204560				39	0	0	37	5	11.9048
MDC1	0	genome.wustl.edu	37	6	30671508	30671508	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	30671508	30671508	T	C	SNP	MDC1	ENST00000376406	human	ensembl	74_37	-1	known	missense	c.5452	p.M1818V	0.000	NULL	pfam_FHA_dom,superfamily_BRCT_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_BRCT_dom,pfscan_FHA_dom	-	no_errors	MDC1	HGNC	ENSG00000137337				186	0	0	155	43	21.7172
MDC1	0	genome.wustl.edu	37	6	30675399	30675399	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	30675399	30675399	G	A	SNP	MDC1	ENST00000376406	human	ensembl	74_37	-1	known	missense	c.2957	p.S986F	0.707	NULL	pfam_FHA_dom,superfamily_BRCT_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_BRCT_dom,pfscan_FHA_dom	-	no_errors	MDC1	HGNC	ENSG00000137337				92	0	0	104	6	5.45455
VARS2	0	genome.wustl.edu	37	6	30890980	30890980	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	30890980	30890980	A	T	SNP	VARS2	ENST00000541562	human	ensembl	74_37	+1	known	missense	c.2375	p.E792V	0.949	superfamily_tRNAsynth_1a_anticodon-bd,tigrfam_Valyl-tRNA_ligase	pfam_aa-tRNA-synth_Ia,pfam_V/L/I-tRNA-synth_anticodon-bd,pfam_Methionyl/Leucyl_tRNA_Synth,superfamily_Val/Leu/Ile-tRNA-synth_edit,superfamily_tRNAsynth_1a_anticodon-bd,prints_Valyl-tRNA_ligase,tigrfam_Valyl-tRNA_ligase	-	no_errors	VARS2	HGNC	ENSG00000137411				136	0	0	119	9	7.03125
CCHCR1	0	genome.wustl.edu	37	6	31116476	31116476	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	31116476	31116476	G	A	SNP	CCHCR1	ENST00000396268	human	ensembl	74_37	-1	known	silent	c.1392	p.S464	0.916	pfam_HCR	pfam_HCR	-	no_errors	CCHCR1	HGNC	ENSG00000204536				81	0	0	81	9	10
TCF19	0	genome.wustl.edu	37	6	31130321	31130321	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	31130321	31130321	G	A	SNP	TCF19	ENST00000376255	human	ensembl	74_37	+1	known	missense	c.865	p.G289R	0.111	superfamily_Znf_FYVE_PHD	pfam_FHA_dom,pfam_Znf_PHD-finger,superfamily_SMAD_FHA_domain,superfamily_Znf_FYVE_PHD,smart_FHA_dom,smart_Znf_PHD,pfscan_FHA_dom	-	no_errors	TCF19	HGNC	ENSG00000137310				65	0	0	61	16	20.7792
ATP6V1G2	0	genome.wustl.edu	37	6	31514301	31514301	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	31514301	31514301	C	T	SNP	ATP6V1G2	ENST00000303892	human	ensembl	74_37	-1	known	silent	c.36	p.L12	1.000	tigrfam_V-ATPase_G	tigrfam_V-ATPase_G	-	no_errors	ATP6V1G2	HGNC	ENSG00000213760				62	0	0	33	4	10.8108
LTA	0	genome.wustl.edu	37	6	31541079	31541079	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	31541079	31541079	C	T	SNP	LTA	ENST00000418386	human	ensembl	74_37	+1	known	missense	c.227	p.S76L	0.011	superfamily_Tumour_necrosis_fac-like_dom,smart_TNF_dom,pfscan_TNF_dom,prints_TNF_beta,prints_TNF	pfam_TNF_dom,superfamily_Tumour_necrosis_fac-like_dom,smart_TNF_dom,pfscan_TNF_dom,prints_TNF_beta,prints_TNF	-	no_errors	LTA	HGNC	ENSG00000226979				41	0	0	43	18	29.5082
PRRC2A	0	genome.wustl.edu	37	6	31600367	31600367	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	31600367	31600367	C	T	SNP	PRRC2A	ENST00000376007	human	ensembl	74_37	+1	known	missense	c.3917	p.S1306F	1.000	NULL	pfam_BAT2_N	-	no_errors	PRRC2A	HGNC	ENSG00000204469				99	0	0	74	19	20.4301
PRRC2A	0	genome.wustl.edu	37	6	31602965	31602965	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	31602965	31602965	G	T	SNP	PRRC2A	ENST00000376007	human	ensembl	74_37	+1	known	missense	c.5217	p.Q1739H	1.000	NULL	pfam_BAT2_N	-	no_errors	PRRC2A	HGNC	ENSG00000204469				50	0	0	59	7	10.6061
BAG6	0	genome.wustl.edu	37	6	31611972	31611972	+	Splice_Site	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	31611972	31611972	C	A	SNP	BAG6	ENST00000404765	human	ensembl	74_37	-1	known	splice_site	c.1556-1	e12-1	1.000	-	-	-	no_errors	BAG6	HGNC	ENSG00000204463				22	0	0	20	3	13.0435
C6orf47	0	genome.wustl.edu	37	6	31627032	31627032	+	Silent	SNP	C	C	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	31627032	31627032	C	G	SNP	C6orf47	ENST00000375911	human	ensembl	74_37	-1	known	silent	c.693	p.G231	0.999	NULL	NULL	-	no_errors	C6orf47	HGNC	ENSG00000204439				38	0	0	39	8	17.0213
VARS	0	genome.wustl.edu	37	6	31747231	31747231	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	31747231	31747231	T	A	SNP	VARS	ENST00000375663	human	ensembl	74_37	-1	known	missense	c.3371	p.D1124V	0.999	pfam_V/L/I-tRNA-synth_anticodon-bd,superfamily_tRNAsynth_1a_anticodon-bd,tigrfam_Valyl-tRNA_ligase	pfam_aa-tRNA-synth_Ia,pfam_V/L/I-tRNA-synth_anticodon-bd,pfam_Glutathione_S-Trfase_N,pfam_Methionyl/Leucyl_tRNA_Synth,pfam_GST_C,superfamily_Val/Leu/Ile-tRNA-synth_edit,superfamily_tRNAsynth_1a_anticodon-bd,superfamily_Glutathione-S-Trfase_C-like,superfamily_tRNA-bd_arm,prints_Valyl-tRNA_ligase,tigrfam_Valyl-tRNA_ligase	-	no_errors	VARS	HGNC	ENSG00000204394				42	0	0	32	7	17.9487
CFB	0	genome.wustl.edu	37	6	31914250	31914250	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	31914250	31914250	C	T	SNP	CFB	ENST00000556679	human	ensembl	74_37	+1	known	silent	c.1671	p.G557	0.851	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,pfscan_Peptidase_S1	pfam_Peptidase_S1,pfam_VWF_A,pfam_Sushi_SCR_CCP,superfamily_Trypsin-like_Pept_dom,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,smart_VWF_A,smart_Peptidase_S1,pfscan_Sushi_SCR_CCP,pfscan_VWF_A,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	CFB	HGNC	ENSG00000243649				50	0	0	49	5	9.25926
C4A	0	genome.wustl.edu	37	6	31963556	31963556	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	31963556	31963556	G	A	SNP	C4A	ENST00000428956	human	ensembl	74_37	+1	known	missense	c.3215	p.R1072Q	0.920	pfam_A2M_comp,superfamily_Terpenoid_cyclase/PrenylTrfase	pfam_A2M_comp,pfam_A-macroglobulin_rcpt-bd,pfam_Macroglobln_a2,pfam_A2M_N_2,pfam_A2M_N,pfam_Netrin_module_non-TIMP,pfam_MacrogloblnA2_thiol-ester-bond,pfam_Anaphylatoxin/fibulin,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd,superfamily_TIMP-like_OB-fold,superfamily_Anaphylatoxin_comp_syst,superfamily_Invasin/intimin_cell_adhesion,smart_Anaphylatoxin/fibulin,smart_Netrin_module_non-TIMP,pfscan_Anaphylatoxin/fibulin,pfscan_Netrin_domain,prints_Anaphylatoxn_comp_syst_dom	-	no_errors	C4A	HGNC	ENSG00000244731				49	0	0	50	9	15.2542
C4A	0	genome.wustl.edu	37	6	31963570	31963570	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	31963570	31963570	T	C	SNP	C4A	ENST00000428956	human	ensembl	74_37	+1	known	missense	c.3229	p.W1077R	1.000	pfam_A2M_comp,superfamily_Terpenoid_cyclase/PrenylTrfase	pfam_A2M_comp,pfam_A-macroglobulin_rcpt-bd,pfam_Macroglobln_a2,pfam_A2M_N_2,pfam_A2M_N,pfam_Netrin_module_non-TIMP,pfam_MacrogloblnA2_thiol-ester-bond,pfam_Anaphylatoxin/fibulin,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd,superfamily_TIMP-like_OB-fold,superfamily_Anaphylatoxin_comp_syst,superfamily_Invasin/intimin_cell_adhesion,smart_Anaphylatoxin/fibulin,smart_Netrin_module_non-TIMP,pfscan_Anaphylatoxin/fibulin,pfscan_Netrin_domain,prints_Anaphylatoxn_comp_syst_dom	-	no_errors	C4A	HGNC	ENSG00000244731				46	0	0	45	9	16.6667
TNXB	0	genome.wustl.edu	37	6	32017118	32017118	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	32017118	32017118	T	C	SNP	TNXB	ENST00000375247	human	ensembl	74_37	-1	known	missense	c.9680	p.K3227R	0.821	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNXB	HGNC	ENSG00000168477				38	0	0	45	3	6.25
TNXB	0	genome.wustl.edu	37	6	32017121	32017121	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	32017121	32017121	C	T	SNP	TNXB	ENST00000375247	human	ensembl	74_37	-1	known	missense	c.9677	p.R3226H	0.176	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNXB	HGNC	ENSG00000168477				36	0	0	41	3	6.81818
TNXB	0	genome.wustl.edu	37	6	32021419	32021419	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	32021419	32021419	C	T	SNP	TNXB	ENST00000375247	human	ensembl	74_37	-1	known	missense	c.8531	p.R2844H	0.000	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNXB	HGNC	ENSG00000168477				67	0	0	69	7	9.21053
TNXB	0	genome.wustl.edu	37	6	32038011	32038011	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	32038011	32038011	C	T	SNP	TNXB	ENST00000375247	human	ensembl	74_37	-1	known	missense	c.5171	p.R1724H	0.001	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNXB	HGNC	ENSG00000168477				31	0	0	25	2	7.40741
TNXB	0	genome.wustl.edu	37	6	32046840	32046840	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	32046840	32046840	C	T	SNP	TNXB	ENST00000375247	human	ensembl	74_37	-1	known	missense	c.4345	p.V1449M	0.058	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNXB	HGNC	ENSG00000168477				30	0	0	41	4	8.88889
TNXB	0	genome.wustl.edu	37	6	32064256	32064256	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	32064256	32064256	G	A	SNP	TNXB	ENST00000375247	human	ensembl	74_37	-1	known	silent	c.1374	p.G458	0.055	pfam_EGF_extracell,smart_EG-like_dom	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNXB	HGNC	ENSG00000168477				20	0	0	17	3	15
TNXB	0	genome.wustl.edu	37	6	32065914	32065914	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	32065914	32065914	G	A	SNP	TNXB	ENST00000375247	human	ensembl	74_37	-1	known	missense	c.62	p.A21V	0.864	NULL	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNXB	HGNC	ENSG00000168477				43	0	0	36	4	10
PBX2	0	genome.wustl.edu	37	6	32155497	32155497	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	32155497	32155497	T	C	SNP	PBX2	ENST00000375050	human	ensembl	74_37	-1	known	missense	c.797	p.H266R	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_PBX,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	PBX2	HGNC	ENSG00000204304				24	0	0	21	6	22.2222
HLA-DRA	0	genome.wustl.edu	37	6	32410334	32410334	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	32410334	32410334	G	A	SNP	HLA-DRA	ENST00000395388	human	ensembl	74_37	+1	known	silent	c.192	p.K64	0.053	pfam_MHC_II_a_N,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_a_N	pfam_MHC_II_a_N,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_a_N,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	HLA-DRA	HGNC	ENSG00000204287				140	0	0	119	12	9.16031
HLA-DOB	0	genome.wustl.edu	37	6	32782325	32782325	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	32782325	32782325	T	A	SNP	HLA-DOB	ENST00000438763	human	ensembl	74_37	-1	known	missense	c.415	p.N139Y	0.945	pfam_Ig_C1-set,smart_Ig_C1-set,pfscan_Ig-like_dom	pfam_MHC_II_b_N,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_b_N,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	HLA-DOB	HGNC	ENSG00000241106				163	0	0	143	16	10.0629
TAP2	0	genome.wustl.edu	37	6	32798213	32798213	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	32798213	32798213	A	G	SNP	TAP2	ENST00000374897	human	ensembl	74_37	-1	known	missense	c.1466	p.L489P	0.990	superfamily_P-loop_NTPase,pfscan_ABC_transporter-like,tigrfam_Ag_transporter2	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC1_TM_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,prints_ABC_B3,prints_ABC_B2,tigrfam_Ag_transporter2	-	no_errors	TAP2	HGNC	ENSG00000204267				20	0	0	27	2	6.89655
TAP2	0	genome.wustl.edu	37	6	32800520	32800520	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	32800520	32800520	G	A	SNP	TAP2	ENST00000374897	human	ensembl	74_37	-1	known	missense	c.1027	p.R343C	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom,tigrfam_Ag_transporter2	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC1_TM_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,prints_ABC_B3,prints_ABC_B2,tigrfam_Ag_transporter2	-	no_errors	TAP2	HGNC	ENSG00000204267				77	0	0	74	4	5.12821
SLC22A23	0	genome.wustl.edu	37	6	3287169	3287169	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	3287169	3287169	G	A	SNP	SLC22A23	ENST00000406686	human	ensembl	74_37	-1	known	silent	c.1470	p.L490	1.000	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A23	HGNC	ENSG00000137266				20	0	0	20	2	9.09091
HLA-DMB	0	genome.wustl.edu	37	6	32906545	32906545	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	32906545	32906545	T	C	SNP	HLA-DMB	ENST00000418107	human	ensembl	74_37	-1	known	missense	c.253	p.T85A	0.000	pfam_MHC_II_b_N,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_b_N	pfam_Ig_C1-set,pfam_MHC_II_b_N,pfam_CD80_C2-set,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_b_N,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	HLA-DMB	HGNC	ENSG00000242574				98	0	0	115	7	5.7377
BRD2	0	genome.wustl.edu	37	6	32947622	32947622	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	32947622	32947622	C	G	SNP	BRD2	ENST00000395289	human	ensembl	74_37	+1	known	missense	c.1964	p.T655R	0.984	NULL	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRD2	HGNC	ENSG00000204256				27	0	0	35	3	7.89474
HLA-DOA	0	genome.wustl.edu	37	6	32975164	32975164	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	32975164	32975164	G	A	SNP	HLA-DOA	ENST00000229829	human	ensembl	74_37	-1	known	silent	c.537	p.F179	0.262	pfam_Ig_C1-set,pfam_CD80_C2-set,smart_Ig_C1-set,pfscan_Ig-like_dom	pfam_MHC_II_a_N,pfam_Ig_C1-set,pfam_CD80_C2-set,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_a_N,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	HLA-DOA	HGNC	ENSG00000204252				131	0	0	111	6	5.12821
COL11A2	0	genome.wustl.edu	37	6	33133401	33133401	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	33133401	33133401	G	A	SNP	COL11A2	ENST00000341947	human	ensembl	74_37	-1	known	missense	c.4675	p.R1559W	1.000	pfam_Fib_collagen_C,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fib_collagen_C	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL11A2	HGNC	ENSG00000204248				74	0	0	59	24	28.9157
COL11A2	0	genome.wustl.edu	37	6	33133486	33133486	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	33133486	33133486	G	A	SNP	COL11A2	ENST00000341947	human	ensembl	74_37	-1	known	silent	c.4590	p.T1530	0.081	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL11A2	HGNC	ENSG00000204248				70	0	0	64	14	17.9487
RXRB	0	genome.wustl.edu	37	6	33164069	33164069	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	33164069	33164069	G	A	SNP	RXRB	ENST00000413614	human	ensembl	74_37	-1	known	missense	c.847	p.L283F	0.007	NULL	pfam_Znf_hrmn_rcpt,smart_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	RXRB	HGNC	ENSG00000204231				16	0	0	20	6	23.0769
RING1	0	genome.wustl.edu	37	6	33177443	33177443	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	33177443	33177443	G	A	SNP	RING1	ENST00000374656	human	ensembl	74_37	+1	known	missense	c.119	p.R40Q	0.998	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RING1	HGNC	ENSG00000204227				110	0	0	65	30	31.5789
B3GALT4	0	genome.wustl.edu	37	6	33245430	33245430	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	33245430	33245430	C	T	SNP	B3GALT4	ENST00000451237	human	ensembl	74_37	+1	known	silent	c.234	p.C78	0.836	NULL	pfam_Glyco_trans_31	-	no_errors	B3GALT4	HGNC	ENSG00000235863				122	0	0	114	19	14.2857
B3GALT4	0	genome.wustl.edu	37	6	33245707	33245707	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	33245707	33245707	G	A	SNP	B3GALT4	ENST00000451237	human	ensembl	74_37	+1	known	missense	c.511	p.V171I	0.772	pfam_Glyco_trans_31	pfam_Glyco_trans_31	-	no_errors	B3GALT4	HGNC	ENSG00000235863				86	0	0	67	22	24.7191
WDR46	0	genome.wustl.edu	37	6	33247573	33247573	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	33247573	33247573	C	T	SNP	WDR46	ENST00000374617	human	ensembl	74_37	-1	known	missense	c.1588	p.E530K	1.000	NULL	pfam_BING4_C_dom,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR46	HGNC	ENSG00000227057				50	0	0	39	9	18.75
KIFC1	0	genome.wustl.edu	37	6	33365928	33365928	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	33365928	33365928	C	T	SNP	KIFC1	ENST00000428849	human	ensembl	74_37	+1	known	silent	c.135	p.G45	0.925	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIFC1	HGNC	ENSG00000237649				38	0	0	41	5	10.8696
DUSP22	0	genome.wustl.edu	37	6	335142	335142	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	335142	335142	C	T	SNP	DUSP22	ENST00000419235	human	ensembl	74_37	+1	known	missense	c.167	p.A56V	0.989	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,prints_Atypical_DUSP,pfscan_Dual-sp_phosphatase_subgr_cat	pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Dual-sp_phosphatase_subgr_cat,prints_Atypical_DUSP,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	DUSP22	HGNC	ENSG00000112679				108	0	0	68	10	12.8205
ITPR3	0	genome.wustl.edu	37	6	33641390	33641390	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	33641390	33641390	A	T	SNP	ITPR3	ENST00000374316	human	ensembl	74_37	+1	known	missense	c.2951	p.D984V	1.000	NULL	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ARM-type_fold,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR3	HGNC	ENSG00000096433				186	0	0	190	18	8.65385
ITPR3	0	genome.wustl.edu	37	6	33648175	33648175	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	33648175	33648175	T	C	SNP	ITPR3	ENST00000374316	human	ensembl	74_37	+1	known	missense	c.4294	p.Y1432H	1.000	NULL	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ARM-type_fold,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR3	HGNC	ENSG00000096433				49	0	0	54	8	12.9032
LEMD2	0	genome.wustl.edu	37	6	33746099	33746099	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	33746099	33746099	G	A	SNP	LEMD2	ENST00000293760	human	ensembl	74_37	-1	known	missense	c.1076	p.A359V	0.429	pfam_Inner-Nucl-membr_MAN1	pfam_Inner-Nucl-membr_MAN1,pfam_LEM_dom,superfamily_LEM/LEM-like_dom,smart_LEM_dom,pfscan_LEM_dom	-	no_errors	LEMD2	HGNC	ENSG00000161904				91	0	0	103	6	5.50459
PACSIN1	0	genome.wustl.edu	37	6	34495114	34495114	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	34495114	34495114	G	A	SNP	PACSIN1	ENST00000244458	human	ensembl	74_37	+1	known	silent	c.69	p.G23	1.000	pfam_FCH_dom,smart_FCH_dom,pfscan_FCH_dom	pfam_FCH_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_FCH_dom,smart_SH3_domain,pfscan_FCH_dom,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	PACSIN1	HGNC	ENSG00000124507				16	0	0	9	4	30.7692
UHRF1BP1	0	genome.wustl.edu	37	6	34826075	34826075	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	34826075	34826075	T	C	SNP	UHRF1BP1	ENST00000192788	human	ensembl	74_37	+1	known	missense	c.1942	p.Y648H	0.424	NULL	NULL	-	no_errors	UHRF1BP1	HGNC	ENSG00000065060				148	0	0	120	9	6.97674
ANKS1A	0	genome.wustl.edu	37	6	34935065	34935065	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	34935065	34935065	C	T	SNP	ANKS1A	ENST00000360359	human	ensembl	74_37	+1	known	missense	c.247	p.P83S	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_PTB/PI_dom,pfam_SAM_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,smart_PTB/PI_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PTB/PI_dom,pfscan_SAM,prints_Ankyrin_rpt	-	no_errors	ANKS1A	HGNC	ENSG00000064999				175	0	0	125	9	6.71642
ANKS1A	0	genome.wustl.edu	37	6	34985579	34985579	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	34985579	34985579	A	G	SNP	ANKS1A	ENST00000360359	human	ensembl	74_37	+1	known	missense	c.1753	p.T585A	0.997	NULL	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_PTB/PI_dom,pfam_SAM_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,smart_PTB/PI_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PTB/PI_dom,pfscan_SAM,prints_Ankyrin_rpt	-	no_errors	ANKS1A	HGNC	ENSG00000064999				136	0	0	135	10	6.89655
SRPK1	0	genome.wustl.edu	37	6	35803233	35803233	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	35803233	35803233	A	T	SNP	SRPK1	ENST00000373825	human	ensembl	74_37	-1	known	missense	c.1816	p.W606R	1.000	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	SRPK1	HGNC	ENSG00000096063				36	0	0	26	2	7.14286
STK38	0	genome.wustl.edu	37	6	36465624	36465624	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	36465624	36465624	C	T	SNP	STK38	ENST00000229812	human	ensembl	74_37	-1	known	missense	c.1105	p.G369R	1.000	superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_dom	-	no_errors	STK38	HGNC	ENSG00000112079				85	0	0	43	15	25.8621
FAM50B	0	genome.wustl.edu	37	6	3850883	3850883	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	3850883	3850883	G	T	SNP	FAM50B	ENST00000380272	human	ensembl	74_37	+1	novel	missense	c.838	p.A280S	1.000	pfam_XAP5	pfam_XAP5	-	no_errors	FAM50B	HGNC	ENSG00000145945				44	0	0	49	8	14.0351
BTBD9	0	genome.wustl.edu	37	6	38560367	38560367	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	38560367	38560367	A	G	SNP	BTBD9	ENST00000403056	human	ensembl	74_37	-1	known	missense	c.799	p.Y267H	1.000	NULL	pfam_BTB_POZ,pfam_BACK,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_BTB/POZ_fold,superfamily_Galactose-bd-like,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	BTBD9	HGNC	ENSG00000183826				126	0	0	94	6	6
DNAH8	0	genome.wustl.edu	37	6	38690609	38690609	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	38690609	38690609	C	T	SNP	DNAH8	ENST00000449981	human	ensembl	74_37	+1	known	silent	c.24	p.G8	0.000	NULL	pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH8	HGNC	ENSG00000124721				33	0	0	22	7	24.1379
DNAH8	0	genome.wustl.edu	37	6	38738194	38738194	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	38738194	38738194	C	T	SNP	DNAH8	ENST00000359357	human	ensembl	74_37	+1	known	silent	c.972	p.C324	1.000	pfam_Dynein_heavy_dom-1	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH8	HGNC	ENSG00000124721				64	0	0	44	4	8.33333
DNAH8	0	genome.wustl.edu	37	6	38813476	38813476	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	38813476	38813476	G	T	SNP	DNAH8	ENST00000359357	human	ensembl	74_37	+1	known	nonsense	c.4321	p.G1441*	1.000	pfam_Dynein_heavy_dom-2	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH8	HGNC	ENSG00000124721				83	0	0	82	7	7.86517
DNAH8	0	genome.wustl.edu	37	6	38858521	38858521	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	38858521	38858521	T	C	SNP	DNAH8	ENST00000359357	human	ensembl	74_37	+1	known	missense	c.7916	p.L2639P	1.000	superfamily_P-loop_NTPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH8	HGNC	ENSG00000124721				123	0	0	89	13	12.7451
DNAH8	0	genome.wustl.edu	37	6	38951995	38951995	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	38951995	38951995	A	G	SNP	DNAH8	ENST00000359357	human	ensembl	74_37	+1	known	missense	c.12314	p.N4105S	0.874	pfam_Dynein_heavy_dom	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH8	HGNC	ENSG00000124721				63	0	0	53	3	5.35714
KIF6	0	genome.wustl.edu	37	6	39563911	39563911	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	39563911	39563911	C	A	SNP	KIF6	ENST00000287152	human	ensembl	74_37	-1	known	missense	c.765	p.E255D	0.997	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF6	HGNC	ENSG00000164627				81	0	0	58	6	9.375
MOCS1	0	genome.wustl.edu	37	6	39877611	39877611	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	39877611	39877611	G	A	SNP	MOCS1	ENST00000340692	human	ensembl	74_37	-1	known	missense	c.1070	p.A357V	0.987	pfam_Mob_synth_C,tigrfam_MoaA	pfam_Mopterin_CF_biosynth-C_dom,pfam_Mob_synth_C,pfam_rSAM,superfamily_Mopterin_CF_biosynth-C_dom,smart_Elp3/MiaB/NifB,tigrfam_MoaA,tigrfam_Mo_CF_biosynth-C	-	no_errors	MOCS1	HGNC	ENSG00000124615				84	0	0	67	8	10.6667
MOCS1	0	genome.wustl.edu	37	6	39880039	39880039	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	39880039	39880039	C	T	SNP	MOCS1	ENST00000340692	human	ensembl	74_37	-1	known	missense	c.950	p.R317H	1.000	pfam_Mob_synth_C,tigrfam_MoaA	pfam_Mopterin_CF_biosynth-C_dom,pfam_Mob_synth_C,pfam_rSAM,superfamily_Mopterin_CF_biosynth-C_dom,smart_Elp3/MiaB/NifB,tigrfam_MoaA,tigrfam_Mo_CF_biosynth-C	-	no_errors	MOCS1	HGNC	ENSG00000124615				116	0	0	123	7	5.38462
PRPF4B	0	genome.wustl.edu	37	6	4031897	4031897	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	4031897	4031897	A	G	SNP	PRPF4B	ENST00000337659	human	ensembl	74_37	+1	known	missense	c.146	p.K49R	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	PRPF4B	HGNC	ENSG00000112739				55	0	0	33	3	8.33333
PRPF4B	0	genome.wustl.edu	37	6	4032892	4032892	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	4032892	4032892	T	C	SNP	PRPF4B	ENST00000337659	human	ensembl	74_37	+1	known	missense	c.1141	p.S381P	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	PRPF4B	HGNC	ENSG00000112739				113	1	0.877193	104	20	16.129
IRF4	0	genome.wustl.edu	37	6	405036	405036	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	405036	405036	A	G	SNP	IRF4	ENST00000380956	human	ensembl	74_37	+1	known	missense	c.1118	p.H373R	1.000	pfam_Interferon_reg_factor-3,superfamily_SMAD_FHA_domain	pfam_Interferon_reg_factor-3,pfam_Interferon_reg_fact_DNA-bd_dom,superfamily_SMAD_FHA_domain,smart_Interferon_reg_fact_DNA-bd_dom,prints_Interferon_reg_fact_DNA-bd_dom	-	no_errors	IRF4	HGNC	ENSG00000137265				60	0	0	55	4	6.77966
PRPF4B	0	genome.wustl.edu	37	6	4053072	4053072	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	4053072	4053072	A	G	SNP	PRPF4B	ENST00000337659	human	ensembl	74_37	+1	known	missense	c.2431	p.I811V	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	PRPF4B	HGNC	ENSG00000112739				49	0	0	34	3	8.10811
UNC5CL	0	genome.wustl.edu	37	6	40996189	40996189	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	40996189	40996189	T	A	SNP	UNC5CL	ENST00000244565	human	ensembl	74_37	-1	known	missense	c.1480	p.T494S	0.000	pfscan_Death_domain	pfam_ZU5,pfam_Death_domain,superfamily_DEATH-like_dom,smart_ZU5,smart_Death_domain,pfscan_Death_domain,pfscan_ZU5	-	no_errors	UNC5CL	HGNC	ENSG00000124602				41	0	0	44	4	8.33333
MDFI	0	genome.wustl.edu	37	6	41613964	41613964	+	Silent	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	41613964	41613964	C	A	SNP	MDFI	ENST00000230321	human	ensembl	74_37	+1	known	silent	c.177	p.T59	0.129	NULL	NULL	-	no_errors	MDFI	HGNC	ENSG00000112559				45	0	0	52	5	8.77193
MDFI	0	genome.wustl.edu	37	6	41617445	41617445	+	Silent	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	41617445	41617445	G	T	SNP	MDFI	ENST00000230321	human	ensembl	74_37	+1	known	silent	c.348	p.A116	0.003	NULL	NULL	-	no_errors	MDFI	HGNC	ENSG00000112559				156	1	0.636943	154	22	12.5
FRS3	0	genome.wustl.edu	37	6	41738995	41738995	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	41738995	41738995	C	T	SNP	FRS3	ENST00000259748	human	ensembl	74_37	-1	known	missense	c.841	p.A281T	0.872	NULL	pfam_Insln_rcpt_S1,smart_Insln_rcpt_S1,pfscan_Insln_rcpt_S1	-	no_errors	FRS3	HGNC	ENSG00000137218				43	0	0	54	3	5.26316
USP49	0	genome.wustl.edu	37	6	41773764	41773764	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	41773764	41773764	C	T	SNP	USP49	ENST00000373009	human	ensembl	74_37	-1	known	missense	c.958	p.D320N	0.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfam_Znf_UBP,smart_Znf_UBP,pfscan_Znf_UBP,pfscan_Peptidase_C19/C67	-	no_errors	USP49	HGNC	ENSG00000164663				82	0	0	66	11	14.2857
TRERF1	0	genome.wustl.edu	37	6	42225919	42225919	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	42225919	42225919	C	T	SNP	TRERF1	ENST00000541110	human	ensembl	74_37	-1	known	missense	c.2350	p.V784M	0.069	NULL	pfam_ELM2_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_SANT/Myb,pfscan_ELM2_dom,pfscan_Znf_C2H2	-	no_errors	TRERF1	HGNC	ENSG00000124496				68	0	0	62	6	8.82353
UBR2	0	genome.wustl.edu	37	6	42562040	42562040	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	42562040	42562040	G	T	SNP	UBR2	ENST00000372899	human	ensembl	74_37	+1	known	nonsense	c.529	p.E177*	1.000	NULL	pfam_ClpS_core,pfam_Znf_N-recognin,superfamily_Ribosomal_L7/12_C/ClpS-like,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR2	HGNC	ENSG00000024048				115	0	0	113	9	7.37705
UBR2	0	genome.wustl.edu	37	6	42603281	42603281	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	42603281	42603281	A	G	SNP	UBR2	ENST00000372899	human	ensembl	74_37	+1	known	silent	c.1671	p.S557	1.000	NULL	pfam_ClpS_core,pfam_Znf_N-recognin,superfamily_Ribosomal_L7/12_C/ClpS-like,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR2	HGNC	ENSG00000024048				163	0	0	115	9	7.25806
UBR2	0	genome.wustl.edu	37	6	42641876	42641876	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	42641876	42641876	A	C	SNP	UBR2	ENST00000372899	human	ensembl	74_37	+1	known	missense	c.4196	p.N1399T	1.000	NULL	pfam_ClpS_core,pfam_Znf_N-recognin,superfamily_Ribosomal_L7/12_C/ClpS-like,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR2	HGNC	ENSG00000024048				184	0	0	104	22	17.4603
UBR2	0	genome.wustl.edu	37	6	42647508	42647508	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	42647508	42647508	A	G	SNP	UBR2	ENST00000372899	human	ensembl	74_37	+1	known	silent	c.4656	p.L1552	1.000	NULL	pfam_ClpS_core,pfam_Znf_N-recognin,superfamily_Ribosomal_L7/12_C/ClpS-like,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR2	HGNC	ENSG00000024048				78	0	0	67	4	5.6338
CUL7	0	genome.wustl.edu	37	6	43020464	43020464	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	43020464	43020464	A	G	SNP	CUL7	ENST00000535468	human	ensembl	74_37	-1	known	silent	c.219	p.Y73	0.007	NULL	pfam_Cullin_N,pfam_CPH_domain,pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,superfamily_Cullin_homology,superfamily_ARM-type_fold,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL7	HGNC	ENSG00000044090				53	0	0	54	4	6.89655
CUL9	0	genome.wustl.edu	37	6	43155142	43155142	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	43155142	43155142	C	T	SNP	CUL9	ENST00000252050	human	ensembl	74_37	+1	known	missense	c.1546	p.P516S	1.000	NULL	pfam_Cullin_N,pfam_CPH_domain,pfam_Znf_C6HC,pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,superfamily_Cullin_homology,superfamily_ARM-type_fold,superfamily_UBA-like,smart_Cullin_neddylation_domain,smart_Znf_C6HC,pfscan_Znf_RING,pfscan_Cullin_homology	-	no_errors	CUL9	HGNC	ENSG00000112659				122	0	0	111	9	7.5
CUL9	0	genome.wustl.edu	37	6	43155582	43155582	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	43155582	43155582	G	A	SNP	CUL9	ENST00000252050	human	ensembl	74_37	+1	known	silent	c.1713	p.K571	1.000	NULL	pfam_Cullin_N,pfam_CPH_domain,pfam_Znf_C6HC,pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,superfamily_Cullin_homology,superfamily_ARM-type_fold,superfamily_UBA-like,smart_Cullin_neddylation_domain,smart_Znf_C6HC,pfscan_Znf_RING,pfscan_Cullin_homology	-	no_errors	CUL9	HGNC	ENSG00000112659				78	0	0	61	5	7.57576
CUL9	0	genome.wustl.edu	37	6	43168555	43168555	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	43168555	43168555	C	T	SNP	CUL9	ENST00000252050	human	ensembl	74_37	+1	known	silent	c.3630	p.H1210	1.000	pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like	pfam_Cullin_N,pfam_CPH_domain,pfam_Znf_C6HC,pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,superfamily_Cullin_homology,superfamily_ARM-type_fold,superfamily_UBA-like,smart_Cullin_neddylation_domain,smart_Znf_C6HC,pfscan_Znf_RING,pfscan_Cullin_homology	-	no_errors	CUL9	HGNC	ENSG00000112659				64	0	0	69	9	11.5385
CUL9	0	genome.wustl.edu	37	6	43172842	43172842	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	43172842	43172842	A	G	SNP	CUL9	ENST00000252050	human	ensembl	74_37	+1	known	missense	c.4621	p.T1541A	0.999	pfam_Cullin_N,superfamily_Cullin_homology	pfam_Cullin_N,pfam_CPH_domain,pfam_Znf_C6HC,pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,superfamily_Cullin_homology,superfamily_ARM-type_fold,superfamily_UBA-like,smart_Cullin_neddylation_domain,smart_Znf_C6HC,pfscan_Znf_RING,pfscan_Cullin_homology	-	no_errors	CUL9	HGNC	ENSG00000112659				52	0	0	53	7	11.6667
ABCC10	0	genome.wustl.edu	37	6	43406490	43406490	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	43406490	43406490	A	G	SNP	ABCC10	ENST00000372530	human	ensembl	74_37	+1	known	missense	c.2084	p.Y695C	1.000	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCC10	HGNC	ENSG00000124574				91	0	0	92	10	9.80392
DLK2	0	genome.wustl.edu	37	6	43418614	43418614	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	43418614	43418614	A	G	SNP	DLK2	ENST00000357338	human	ensembl	74_37	-1	known	missense	c.815	p.V272A	0.000	NULL	pfam_EG-like_dom,pfam_EGF_extracell,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	DLK2	HGNC	ENSG00000171462				68	0	0	79	6	7.05882
POLR1C	0	genome.wustl.edu	37	6	43488739	43488739	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	43488739	43488739	A	T	SNP	POLR1C	ENST00000372389	human	ensembl	74_37	+1	known	missense	c.875	p.K292M	1.000	pfam_RBP11-like_dimer,superfamily_RBP11-like_dimer,smart_DNA-dir_RNA_pol_RpoA/D/Rpb3	pfam_DNA-dir_RNA_pol_insert,pfam_RBP11-like_dimer,superfamily_RBP11-like_dimer,superfamily_DNA-dir_RNA_pol_insert,smart_DNA-dir_RNA_pol_RpoA/D/Rpb3	-	no_errors	POLR1C	HGNC	ENSG00000171453				109	0	0	100	6	5.66038
XPO5	0	genome.wustl.edu	37	6	43541338	43541338	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	43541338	43541338	A	T	SNP	XPO5	ENST00000265351	human	ensembl	74_37	-1	known	missense	c.106	p.F36I	1.000	superfamily_ARM-type_fold,smart_Importin-beta_N	pfam_Exportin-1/Importin-b-like,superfamily_ARM-type_fold,smart_Importin-beta_N	-	no_errors	XPO5	HGNC	ENSG00000124571				51	0	0	30	4	11.7647
POLH	0	genome.wustl.edu	37	6	43581998	43581998	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	43581998	43581998	G	T	SNP	POLH	ENST00000372236	human	ensembl	74_37	+1	known	missense	c.1846	p.V616L	0.000	pirsf_DNA_pol_eta	pfam_DNA_repair_prot_UmuC-like,pfam_DNA_pol_Y-fam_little_finger,superfamily_DNA_pol_Y-fam_little_finger,pirsf_DNA_pol_eta,pfscan_DNA_repair_prot_UmuC-like_N	-	no_errors	POLH	HGNC	ENSG00000170734				130	0	0	88	28	24.1379
TMEM63B	0	genome.wustl.edu	37	6	44121530	44121530	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	44121530	44121530	C	T	SNP	TMEM63B	ENST00000259746	human	ensembl	74_37	+1	known	missense	c.2060	p.A687V	0.998	pfam_DUF221	pfam_DUF221	-	no_errors	TMEM63B	HGNC	ENSG00000137216				70	0	0	70	16	18.6047
HSP90AB1	0	genome.wustl.edu	37	6	44216456	44216456	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	44216456	44216456	T	C	SNP	HSP90AB1	ENST00000353801	human	ensembl	74_37	+1	known	silent	c.90	p.N30	1.000	superfamily_HATPase_ATP-bd,pirsf_Hsp90_fam,prints_Hsp90_N	pfam_Hsp90_fam,pfam_HATPase_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_HATPase_ATP-bd,smart_HATPase_ATP-bd,pirsf_Hsp90_fam,prints_Hsp90_N	-	no_errors	HSP90AB1	HGNC	ENSG00000096384				239	1	0.416667	159	22	12.1547
SLC35B2	0	genome.wustl.edu	37	6	44222795	44222795	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	44222795	44222795	C	T	SNP	SLC35B2	ENST00000393812	human	ensembl	74_37	-1	known	missense	c.947	p.G316D	1.000	pfam_UAA,pfam_DMT	pfam_UAA,pfam_DMT	-	no_errors	SLC35B2	HGNC	ENSG00000157593				43	0	0	59	4	6.34921
AARS2	0	genome.wustl.edu	37	6	44271037	44271037	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	44271037	44271037	G	A	SNP	AARS2	ENST00000244571	human	ensembl	74_37	-1	known	missense	c.2131	p.R711C	1.000	superfamily_Thr/Ala-tRNA-synth_IIc_edit,pfscan_Ala-tRNA-synth_IIc_core,tigrfam_Ala-tRNA-lgiase_IIc	pfam_Ala-tRNA-synth_IIc_N,pfam_tRNA_SAD,superfamily_Ala-tRNA-ligase_IIc_anticod-bd,superfamily_Thr/Ala-tRNA-synth_IIc_edit,smart_tRNA_SAD,prints_Ala-tRNA-lgiase_IIc,pfscan_Ala-tRNA-synth_IIc_core,tigrfam_Ala-tRNA-lgiase_IIc	-	no_errors	AARS2	HGNC	ENSG00000124608				39	0	0	44	4	8.33333
SPATS1	0	genome.wustl.edu	37	6	44320601	44320601	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	44320601	44320601	C	A	SNP	SPATS1	ENST00000288390	human	ensembl	74_37	+1	known	missense	c.278	p.A93D	0.001	NULL	NULL	-	no_errors	SPATS1	HGNC	ENSG00000249481				66	0	0	48	7	12.7273
CDC5L	0	genome.wustl.edu	37	6	44371587	44371587	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	44371587	44371587	C	T	SNP	CDC5L	ENST00000371477	human	ensembl	74_37	+1	known	missense	c.581	p.A194V	1.000	NULL	pfam_DUF3351,pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	CDC5L	HGNC	ENSG00000096401				94	0	0	74	11	12.9412
CLIC5	0	genome.wustl.edu	37	6	45917038	45917038	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	45917038	45917038	A	T	SNP	CLIC5	ENST00000185206	human	ensembl	74_37	-1	known	missense	c.731	p.V244D	1.000	superfamily_Thioredoxin-like_fold,prints_Int_Cl_channel,tigrfam_Int_Cl_channel	superfamily_Glutathione-S-Trfase_C-like,superfamily_Thioredoxin-like_fold,prints_Int_Cl_channel,tigrfam_Int_Cl_channel	-	no_errors	CLIC5	HGNC	ENSG00000112782				171	1	0.581395	155	11	6.62651
ENPP5	0	genome.wustl.edu	37	6	46129477	46129477	+	Silent	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	46129477	46129477	A	T	SNP	ENPP5	ENST00000230565	human	ensembl	74_37	-1	known	silent	c.1020	p.G340	0.918	pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	-	no_errors	ENPP5	HGNC	ENSG00000112796				316	0	0	267	17	5.98592
TDRD6	0	genome.wustl.edu	37	6	46658994	46658994	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	46658994	46658994	G	T	SNP	TDRD6	ENST00000316081	human	ensembl	74_37	+1	known	missense	c.3129	p.K1043N	0.336	pfam_Tudor,smart_Tudor,pfscan_Tudor	pfam_Tudor,smart_Tudor,pfscan_Tudor	-	no_errors	TDRD6	HGNC	ENSG00000180113				120	0	0	105	9	7.89474
GPR116	0	genome.wustl.edu	37	6	46851907	46851907	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	46851907	46851907	C	T	SNP	GPR116	ENST00000265417	human	ensembl	74_37	-1	known	missense	c.430	p.V144I	0.000	prints_GPCR_2_Ig-hepta_rcpt	pfam_GPCR_2_secretin-like,pfam_SEA_dom,pfam_GPS_dom,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,pfscan_Ig-like_dom,prints_GPCR_2_Ig-hepta_rcpt,prints_GPCR_2_secretin-like	-	no_errors	GPR116	HGNC	ENSG00000069122				122	0	0	101	25	19.8413
GPR110	0	genome.wustl.edu	37	6	46977420	46977420	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	46977420	46977420	A	G	SNP	GPR110	ENST00000371253	human	ensembl	74_37	-1	known	missense	c.1751	p.V584A	0.002	pfam_GPCR_2_secretin-like	pfam_GPCR_2_secretin-like,pfam_SEA_dom,pfam_GPS_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like,prints_GPCR_2_Ig-hepta_rcpt	-	no_errors	GPR110	HGNC	ENSG00000153292				112	0	0	85	11	11.4583
TNFRSF21	0	genome.wustl.edu	37	6	47254265	47254265	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	47254265	47254265	G	A	SNP	TNFRSF21	ENST00000296861	human	ensembl	74_37	-1	known	missense	c.163	p.R55C	1.000	smart_TNFR/NGFR_Cys_rich_reg	pfam_Death_domain,superfamily_DEATH-like_dom,smart_TNFR/NGFR_Cys_rich_reg,smart_Death_domain,pfscan_Death_domain,pfscan_TNFR/NGFR_Cys_rich_reg,prints_TNFR_21	-	no_errors	TNFRSF21	HGNC	ENSG00000146072				69	0	0	57	4	6.55738
GPR115	0	genome.wustl.edu	37	6	47675983	47675983	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	47675983	47675983	T	C	SNP	GPR115	ENST00000371220	human	ensembl	74_37	+1	known	silent	c.288	p.P96	0.001	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like,prints_GPCR_2_Ig-hepta_rcpt	-	no_errors	GPR115	HGNC	ENSG00000153294				49	0	0	32	3	8.57143
EXOC2	0	genome.wustl.edu	37	6	486729	486729	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	486729	486729	C	T	SNP	EXOC2	ENST00000230449	human	ensembl	74_37	-1	known	missense	c.2717	p.S906N	0.982	NULL	pfam_IPT,superfamily_Ig_E-set,superfamily_Cullin_repeat-like_dom	-	no_errors	EXOC2	HGNC	ENSG00000112685				150	0	0	75	22	22.6804
CDYL	0	genome.wustl.edu	37	6	4892095	4892095	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	4892095	4892095	G	A	SNP	CDYL	ENST00000328908	human	ensembl	74_37	+1	known	missense	c.335	p.R112H	0.998	pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow	pfam_Crotonase_core_superfam,pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow	-	no_errors	CDYL	HGNC	ENSG00000153046				83	0	0	47	6	11.3208
CRISP2	0	genome.wustl.edu	37	6	49676859	49676859	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	49676859	49676859	T	C	SNP	CRISP2	ENST00000339139	human	ensembl	74_37	-1	known	silent	c.51	p.L17	0.041	NULL	pfam_Cysteine_rich_secretory,pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1,prints_Allrgn_V5/Tpx1	-	no_errors	CRISP2	HGNC	ENSG00000124490				93	0	0	81	7	7.95455
TFAP2D	0	genome.wustl.edu	37	6	50681799	50681799	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	50681799	50681799	G	A	SNP	TFAP2D	ENST00000008391	human	ensembl	74_37	+1	known	missense	c.31	p.D11N	1.000	NULL	pfam_TF_AP2_C,prints_TF_AP2_C	-	no_errors	TFAP2D	HGNC	ENSG00000008197				80	0	0	73	8	9.87654
TFAP2B	0	genome.wustl.edu	37	6	50796364	50796364	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	50796364	50796364	T	A	SNP	TFAP2B	ENST00000263046	human	ensembl	74_37	+1	known	missense	c.600	p.N200K	1.000	prints_TF_AP2_beta	pfam_TF_AP2_C,prints_TF_AP2_beta,prints_TF_AP2_C	-	no_errors	TFAP2B	HGNC	ENSG00000008196				140	0	0	90	9	9.09091
PKHD1	0	genome.wustl.edu	37	6	51619589	51619589	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	51619589	51619589	C	T	SNP	PKHD1	ENST00000371117	human	ensembl	74_37	-1	known	silent	c.8790	p.R2930	0.846	NULL	pfam_IPT,pfam_G8_domain,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,smart_IPT,smart_PbH1	-	no_errors	PKHD1	HGNC	ENSG00000170927				101	0	0	64	4	5.88235
PKHD1	0	genome.wustl.edu	37	6	51897950	51897950	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	51897950	51897950	C	T	SNP	PKHD1	ENST00000371117	human	ensembl	74_37	-1	known	missense	c.3242	p.R1081H	0.000	pfam_IPT,superfamily_Ig_E-set,smart_IPT,smart_PbH1	pfam_IPT,pfam_G8_domain,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,smart_IPT,smart_PbH1	-	no_errors	PKHD1	HGNC	ENSG00000170927				78	0	0	54	6	10
ELOVL5	0	genome.wustl.edu	37	6	53134010	53134010	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	53134010	53134010	C	A	SNP	ELOVL5	ENST00000541407	human	ensembl	74_37	-1	known	missense	c.896	p.G299V	0.999	NULL	pfam_GNS1_SUR4	-	no_errors	ELOVL5	HGNC	ENSG00000012660				128	0	0	82	15	15.4639
EXOC2	0	genome.wustl.edu	37	6	532476	532476	+	Silent	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	532476	532476	A	T	SNP	EXOC2	ENST00000230449	human	ensembl	74_37	-1	known	silent	c.2373	p.P791	0.996	NULL	pfam_IPT,superfamily_Ig_E-set,superfamily_Cullin_repeat-like_dom	-	no_errors	EXOC2	HGNC	ENSG00000112685				120	0	0	84	10	10.6383
KLHL31	0	genome.wustl.edu	37	6	53519830	53519830	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	53519830	53519830	T	G	SNP	KLHL31	ENST00000370905	human	ensembl	74_37	-1	known	missense	c.241	p.T81P	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_DUF1668_ORYSA,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL31	HGNC	ENSG00000124743				124	0	0	93	10	9.70874
LRRC1	0	genome.wustl.edu	37	6	53784454	53784454	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	53784454	53784454	A	C	SNP	LRRC1	ENST00000370888	human	ensembl	74_37	+1	known	missense	c.1265	p.E422A	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC1	HGNC	ENSG00000137269				129	0	0	97	7	6.73077
MLIP	0	genome.wustl.edu	37	6	53989479	53989479	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	53989479	53989479	G	A	SNP	MLIP	ENST00000274897	human	ensembl	74_37	+1	known	missense	c.428	p.S143N	0.217	NULL	NULL	-	no_errors	MLIP	HGNC	ENSG00000146147				99	0	0	76	9	10.5882
FAM83B	0	genome.wustl.edu	37	6	54806068	54806068	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	54806068	54806068	T	G	SNP	FAM83B	ENST00000306858	human	ensembl	74_37	+1	known	missense	c.2299	p.F767V	1.000	NULL	pfam_DUF1669	-	no_errors	FAM83B	HGNC	ENSG00000168143				114	0	0	65	7	9.72222
FARS2	0	genome.wustl.edu	37	6	5613496	5613496	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	5613496	5613496	C	T	SNP	FARS2	ENST00000274680	human	ensembl	74_37	+1	known	missense	c.1160	p.T387I	0.951	pfam_PheS_beta_Fdx_antiC-bd,superfamily_PheS_beta_Fdx_antiC-bd,smart_PheS_beta_Fdx_antiC-bd,tigrfam_Phe-tRNA-synth_IIc_mito	pfam_Phenylalanyl-tRNA_Synthase,pfam_PheS_beta_Fdx_antiC-bd,superfamily_PheS_beta_Fdx_antiC-bd,smart_PheS_beta_Fdx_antiC-bd,pfscan_aa-tRNA-synth_II,tigrfam_Phe-tRNA-synth_IIc_mito	-	no_errors	FARS2	HGNC	ENSG00000145982				101	0	0	89	5	5.31915
DST	0	genome.wustl.edu	37	6	56354379	56354379	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	56354379	56354379	T	C	SNP	DST	ENST00000370754	human	ensembl	74_37	-1	known	missense	c.20693	p.E6898G	1.000	pfam_Spectrin_repeat,superfamily_ABC1_TM_dom,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_dom,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	DST	HGNC	ENSG00000151914				221	0	0	123	46	27.2189
DST	0	genome.wustl.edu	37	6	56417167	56417167	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	56417167	56417167	T	C	SNP	DST	ENST00000370754	human	ensembl	74_37	-1	known	missense	c.16330	p.K5444E	1.000	superfamily_ABC1_TM_dom,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_dom,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	DST	HGNC	ENSG00000151914				112	0	0	72	10	12.1951
DST	0	genome.wustl.edu	37	6	56437713	56437713	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	56437713	56437713	A	G	SNP	DST	ENST00000370754	human	ensembl	74_37	-1	known	silent	c.13293	p.S4431	0.973	superfamily_ABC1_TM_dom,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_dom,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	DST	HGNC	ENSG00000151914				62	0	0	33	3	8.33333
DST	0	genome.wustl.edu	37	6	56483403	56483403	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	56483403	56483403	T	A	SNP	DST	ENST00000370765	human	ensembl	74_37	-1	known	missense	c.5429	p.Y1810F	0.941	NULL	pfam_Plectin_repeat,pfam_Spectrin_repeat,superfamily_Ig/albumin-bd,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	DST	HGNC	ENSG00000151914				198	0	0	145	12	7.64331
DST	0	genome.wustl.edu	37	6	56819348	56819348	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	56819348	56819348	T	C	SNP	DST	ENST00000370754	human	ensembl	74_37	-1	known	missense	c.38	p.Y13C	1.000	superfamily_ABC1_TM_dom	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_dom,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	DST	HGNC	ENSG00000151914				37	0	0	37	3	7.5
BEND6	0	genome.wustl.edu	37	6	56880075	56880075	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	56880075	56880075	G	A	SNP	BEND6	ENST00000370746	human	ensembl	74_37	+1	known	missense	c.443	p.C148Y	0.376	NULL	pfam_BEN_domain	-	no_errors	BEND6	HGNC	ENSG00000151917				126	0	0	78	9	10.3448
KIAA1586	0	genome.wustl.edu	37	6	56918985	56918985	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	56918985	56918985	C	A	SNP	KIAA1586	ENST00000370733	human	ensembl	74_37	+1	known	missense	c.1688	p.A563D	0.987	superfamily_RNaseH-like_dom	superfamily_RNaseH-like_dom	-	no_errors	KIAA1586	HGNC	ENSG00000168116				47	0	0	30	3	9.09091
ZNF451	0	genome.wustl.edu	37	6	57015643	57015643	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	57015643	57015643	T	C	SNP	ZNF451	ENST00000370706	human	ensembl	74_37	+1	known	missense	c.2735	p.F912S	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF451	HGNC	ENSG00000112200				137	0	0	137	13	8.66667
EXOC2	0	genome.wustl.edu	37	6	592505	592505	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	592505	592505	G	A	SNP	EXOC2	ENST00000230449	human	ensembl	74_37	-1	known	missense	c.1156	p.H386Y	1.000	superfamily_Cullin_repeat-like_dom	pfam_IPT,superfamily_Ig_E-set,superfamily_Cullin_repeat-like_dom	-	no_errors	EXOC2	HGNC	ENSG00000112685				90	0	0	59	4	6.34921
LGSN	0	genome.wustl.edu	37	6	63990621	63990621	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	63990621	63990621	C	T	SNP	LGSN	ENST00000370657	human	ensembl	74_37	-1	known	missense	c.835	p.A279T	1.000	pfam_Gln_synth_cat_dom	pfam_Gln_synth_cat_dom,pfam_Gln_synt_beta,superfamily_Gln_synt_beta	-	no_errors	LGSN	HGNC	ENSG00000146166				70	0	0	50	4	7.40741
LGSN	0	genome.wustl.edu	37	6	63995646	63995646	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	63995646	63995646	T	C	SNP	LGSN	ENST00000370657	human	ensembl	74_37	-1	known	missense	c.176	p.D59G	0.146	NULL	pfam_Gln_synth_cat_dom,pfam_Gln_synt_beta,superfamily_Gln_synt_beta	-	no_errors	LGSN	HGNC	ENSG00000146166				50	0	0	34	3	8.10811
PTP4A1	0	genome.wustl.edu	37	6	64286857	64286857	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	64286857	64286857	T	A	SNP	PTP4A1	ENST00000370651	human	ensembl	74_37	+1	known	missense	c.72	p.N24K	0.999	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Dual-sp_phosphatase_cat-dom,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase	-	no_errors	PTP4A1	HGNC	ENSG00000112245				92	0	0	61	4	6.15385
PHF3	0	genome.wustl.edu	37	6	64422823	64422823	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	64422823	64422823	T	A	SNP	PHF3	ENST00000262043	human	ensembl	74_37	+1	known	missense	c.5339	p.I1780N	0.577	NULL	pfam_TFIIS_cen_dom,pfam_SPOC_C,pfam_Znf_PHD-finger,superfamily_TFIIS_cen_dom,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_TFS2M,pfscan_Znf_PHD-finger	-	no_errors	PHF3	HGNC	ENSG00000118482				99	0	0	100	9	8.25688
EYS	0	genome.wustl.edu	37	6	66115115	66115115	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	66115115	66115115	A	G	SNP	EYS	ENST00000370616	human	ensembl	74_37	-1	known	silent	c.1008	p.F336	0.003	smart_EG-like_dom	pfam_Laminin_G,pfam_EG-like_dom,superfamily_ConA-like_lec_gl_sf,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	EYS	HGNC	ENSG00000188107				184	0	0	119	7	5.55556
BAI3	0	genome.wustl.edu	37	6	69703697	69703697	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	69703697	69703697	C	T	SNP	BAI3	ENST00000370598	human	ensembl	74_37	+1	known	missense	c.1772	p.A591V	1.000	pfam_DUF3497	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_Thrombospondin_1_rpt,pfam_GPS_dom,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_CUB_dom,pfscan_GPS_dom,pfscan_Thrombospondin_1_rpt,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_brain-spec_angio_inhib,prints_GPCR_2_secretin-like	-	no_errors	BAI3	HGNC	ENSG00000135298				332	2	0.598802	172	49	22.1719
BAI3	0	genome.wustl.edu	37	6	69758078	69758078	+	Silent	SNP	G	G	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	69758078	69758078	G	C	SNP	BAI3	ENST00000370598	human	ensembl	74_37	+1	known	silent	c.2109	p.V703	1.000	pfam_DUF3497	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_Thrombospondin_1_rpt,pfam_GPS_dom,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_CUB_dom,pfscan_GPS_dom,pfscan_Thrombospondin_1_rpt,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_brain-spec_angio_inhib,prints_GPCR_2_secretin-like	-	no_errors	BAI3	HGNC	ENSG00000135298				128	0	0	77	8	9.41176
BAI3	0	genome.wustl.edu	37	6	70064145	70064145	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	70064145	70064145	C	T	SNP	BAI3	ENST00000370598	human	ensembl	74_37	+1	known	silent	c.3480	p.C1160	1.000	NULL	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_Thrombospondin_1_rpt,pfam_GPS_dom,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_CUB_dom,pfscan_GPS_dom,pfscan_Thrombospondin_1_rpt,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_brain-spec_angio_inhib,prints_GPCR_2_secretin-like	-	no_errors	BAI3	HGNC	ENSG00000135298				146	0	0	118	9	7.08661
LMBRD1	0	genome.wustl.edu	37	6	70462228	70462228	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	70462228	70462228	A	G	SNP	LMBRD1	ENST00000370577	human	ensembl	74_37	-1	known	missense	c.328	p.F110L	1.000	pfam_LMBR1-like_membr_prot	pfam_LMBR1-like_membr_prot	-	no_errors	LMBRD1	HGNC	ENSG00000168216				91	0	0	59	4	6.34921
LMBRD1	0	genome.wustl.edu	37	6	70500343	70500343	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	70500343	70500343	T	A	SNP	LMBRD1	ENST00000370577	human	ensembl	74_37	-1	known	missense	c.91	p.I31L	1.000	pfam_LMBR1-like_membr_prot	pfam_LMBR1-like_membr_prot	-	no_errors	LMBRD1	HGNC	ENSG00000168216				79	0	0	47	3	6
COL19A1	0	genome.wustl.edu	37	6	70744135	70744135	+	Splice_Site	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	70744135	70744135	A	C	SNP	COL19A1	ENST00000322773	human	ensembl	74_37	+1	known	splice_site	c.1081-2	e12-2	0.980	-	-	-	no_errors	COL19A1	HGNC	ENSG00000082293				88	0	0	59	5	7.8125
OGFRL1	0	genome.wustl.edu	37	6	72006048	72006048	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	72006048	72006048	A	G	SNP	OGFRL1	ENST00000370435	human	ensembl	74_37	+1	known	silent	c.429	p.K143	0.997	pfam_OGF_rcpt	pfam_OGF_rcpt	-	no_errors	OGFRL1	HGNC	ENSG00000119900				121	0	0	77	6	7.22892
RIMS1	0	genome.wustl.edu	37	6	72960976	72960976	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	72960976	72960976	A	G	SNP	RIMS1	ENST00000521978	human	ensembl	74_37	+1	known	missense	c.2603	p.Q868R	1.000	superfamily_C2_dom	pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_Znf_FYVE_PHD,superfamily_PDZ,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ,pfscan_Znf_FYVE-typ,pfscan_Znf_FYVE-rel	-	no_errors	RIMS1	HGNC	ENSG00000079841				25	0	0	15	3	16.6667
CAGE1	0	genome.wustl.edu	37	6	7374252	7374252	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	7374252	7374252	G	A	SNP	CAGE1	ENST00000338150	human	ensembl	74_37	-1	known	missense	c.800	p.T267I	0.001	NULL	NULL	-	no_errors	CAGE1	HGNC	ENSG00000164304				172	0	0	151	11	6.79012
KCNQ5	0	genome.wustl.edu	37	6	73904299	73904299	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	73904299	73904299	C	T	SNP	KCNQ5	ENST00000402622	human	ensembl	74_37	+1	known	missense	c.1991	p.T664I	0.999	NULL	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ5	HGNC	ENSG00000185760				109	0	0	96	14	12.7273
KCNQ5	0	genome.wustl.edu	37	6	73904338	73904338	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	73904338	73904338	C	T	SNP	KCNQ5	ENST00000402622	human	ensembl	74_37	+1	known	missense	c.2030	p.S677L	1.000	NULL	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ5	HGNC	ENSG00000185760				131	0	0	89	28	23.9316
KCNQ5	0	genome.wustl.edu	37	6	73904905	73904905	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	73904905	73904905	G	A	SNP	KCNQ5	ENST00000402622	human	ensembl	74_37	+1	known	missense	c.2597	p.G866D	1.000	NULL	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ5	HGNC	ENSG00000185760				80	0	0	53	6	10.1695
MTO1	0	genome.wustl.edu	37	6	74210336	74210336	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	74210336	74210336	G	A	SNP	MTO1	ENST00000415954	human	ensembl	74_37	+1	known	missense	c.2077	p.A693T	1.000	NULL	pfam_GIDA-rel,pfam_FAD_bind_dom,prints_FAD_pyr_nucl-diS_OxRdtase,tigrfam_GidA	-	no_errors	MTO1	HGNC	ENSG00000135297				115	0	0	51	19	27.1429
CD109	0	genome.wustl.edu	37	6	74476735	74476735	+	Splice_Site	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	74476735	74476735	T	C	SNP	CD109	ENST00000287097	human	ensembl	74_37	+1	known	splice_site	c.1497+2	e13+2	1.000	-	-	-	no_errors	CD109	HGNC	ENSG00000156535				89	0	0	60	9	13.0435
CD109	0	genome.wustl.edu	37	6	74481262	74481262	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	74481262	74481262	T	C	SNP	CD109	ENST00000287097	human	ensembl	74_37	+1	known	silent	c.1785	p.S595	1.000	pfam_A2M_N_2	pfam_A2M_comp,pfam_A2M_N_2,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd	-	no_errors	CD109	HGNC	ENSG00000156535				124	0	0	69	8	10.3896
DSP	0	genome.wustl.edu	37	6	7571730	7571730	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	7571730	7571730	C	T	SNP	DSP	ENST00000379802	human	ensembl	74_37	+1	known	missense	c.1816	p.R606W	0.984	NULL	pfam_Plectin_repeat,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	DSP	HGNC	ENSG00000096696				205	0	0	187	13	6.5
DSP	0	genome.wustl.edu	37	6	7580889	7580889	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	7580889	7580889	T	C	SNP	DSP	ENST00000379802	human	ensembl	74_37	+1	known	missense	c.4466	p.L1489P	0.478	NULL	pfam_Plectin_repeat,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	DSP	HGNC	ENSG00000096696				90	0	0	71	13	15.4762
COL12A1	0	genome.wustl.edu	37	6	75827138	75827138	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	75827138	75827138	T	C	SNP	COL12A1	ENST00000322507	human	ensembl	74_37	-1	known	silent	c.7479	p.E2493	0.993	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_Fibronectin_type3,pfam_VWF_A,pfam_Collagen,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL12A1	HGNC	ENSG00000111799				103	0	0	85	7	7.6087
DSP	0	genome.wustl.edu	37	6	7584584	7584584	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	7584584	7584584	C	T	SNP	DSP	ENST00000379802	human	ensembl	74_37	+1	known	silent	c.7089	p.H2363	0.129	smart_Plectin_repeat	pfam_Plectin_repeat,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	DSP	HGNC	ENSG00000096696				89	0	0	53	16	23.1884
COL12A1	0	genome.wustl.edu	37	6	75853014	75853014	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	75853014	75853014	C	T	SNP	COL12A1	ENST00000322507	human	ensembl	74_37	-1	known	missense	c.4781	p.R1594H	0.651	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_VWF_A,pfam_Collagen,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL12A1	HGNC	ENSG00000111799				126	0	0	100	7	6.54206
COL12A1	0	genome.wustl.edu	37	6	75898176	75898176	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	75898176	75898176	G	A	SNP	COL12A1	ENST00000322507	human	ensembl	74_37	-1	known	missense	c.899	p.A300V	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_Fibronectin_type3,pfam_VWF_A,pfam_Collagen,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL12A1	HGNC	ENSG00000111799				118	0	0	97	10	9.34579
SNRNP48	0	genome.wustl.edu	37	6	7601735	7601735	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	7601735	7601735	C	A	SNP	SNRNP48	ENST00000342415	human	ensembl	74_37	+1	known	missense	c.573	p.D191E	1.000	NULL	pfam_TRM13/UPF0224_CHHC_Znf_dom	-	no_errors	SNRNP48	HGNC	ENSG00000168566				115	0	0	70	4	5.40541
FILIP1	0	genome.wustl.edu	37	6	76023662	76023662	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	76023662	76023662	A	G	SNP	FILIP1	ENST00000237172	human	ensembl	74_37	-1	known	missense	c.1886	p.I629T	1.000	NULL	pfam_Cortactin-binding_p2_N,prints_Tropomyosin	-	no_errors	FILIP1	HGNC	ENSG00000118407				360	0	0	233	28	10.728
MYO6	0	genome.wustl.edu	37	6	76545675	76545675	+	Splice_Site	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	76545675	76545675	T	C	SNP	MYO6	ENST00000369981	human	ensembl	74_37	+1	known	splice_site	c.553+2	e6+2	1.000	-	-	-	no_errors	MYO6	HGNC	ENSG00000196586				95	0	0	53	4	7.01754
MYO6	0	genome.wustl.edu	37	6	76617407	76617407	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	76617407	76617407	A	G	SNP	MYO6	ENST00000369981	human	ensembl	74_37	+1	known	missense	c.3292	p.T1098A	1.000	NULL	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO6	HGNC	ENSG00000196586				83	0	0	40	5	11.1111
IMPG1	0	genome.wustl.edu	37	6	76657071	76657071	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	76657071	76657071	G	A	SNP	IMPG1	ENST00000369950	human	ensembl	74_37	-1	known	silent	c.2004	p.L668	0.002	pfam_SEA_dom,smart_SEA_dom	pfam_SEA_dom,smart_SEA_dom,pfscan_EG-like_dom,pfscan_SEA_dom	-	no_errors	IMPG1	HGNC	ENSG00000112706				79	0	0	62	11	15.0685
IMPG1	0	genome.wustl.edu	37	6	76715197	76715197	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	76715197	76715197	T	G	SNP	IMPG1	ENST00000369950	human	ensembl	74_37	-1	known	missense	c.942	p.E314D	0.085	pfam_SEA_dom,smart_SEA_dom	pfam_SEA_dom,smart_SEA_dom,pfscan_EG-like_dom,pfscan_SEA_dom	-	no_errors	IMPG1	HGNC	ENSG00000112706				132	0	0	114	10	8.06452
IMPG1	0	genome.wustl.edu	37	6	76734953	76734953	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	76734953	76734953	T	C	SNP	IMPG1	ENST00000369950	human	ensembl	74_37	-1	known	missense	c.520	p.K174E	0.006	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_EG-like_dom,pfscan_SEA_dom	-	no_errors	IMPG1	HGNC	ENSG00000112706				151	0	0	64	12	15.7895
BCKDHB	0	genome.wustl.edu	37	6	80816557	80816557	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	80816557	80816557	G	A	SNP	BCKDHB	ENST00000320393	human	ensembl	74_37	+1	known	silent	c.147	p.R49	0.999	NULL	pfam_Transketolase-like_Pyr-bd,pfam_Transketolase_C,superfamily_Transketo_C/Pyr-ferredox_oxred,smart_Transketolase-like_Pyr-bd	-	no_errors	BCKDHB	HGNC	ENSG00000083123				14	0	0	10	3	23.0769
IBTK	0	genome.wustl.edu	37	6	82930339	82930339	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	82930339	82930339	T	A	SNP	IBTK	ENST00000306270	human	ensembl	74_37	-1	known	missense	c.1216	p.I406F	1.000	NULL	pfam_Reg_chr_condens,pfam_BTB_POZ,pfam_Ankyrin_rpt,superfamily_RCC1/BLIP-II,superfamily_BTB/POZ_fold,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_BTB/POZ-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_BTB/POZ-like,pfscan_Reg_chr_condens	-	no_errors	IBTK	HGNC	ENSG00000005700				130	0	0	104	9	7.9646
UBE3D	0	genome.wustl.edu	37	6	83732251	83732251	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	83732251	83732251	T	C	SNP	UBE3D	ENST00000369747	human	ensembl	74_37	-1	known	missense	c.767	p.Q256R	0.997	pfam_UBQ-conj_enz_E2-bd_prot	pfam_UBQ-conj_enz_E2-bd_prot	-	no_errors	UBE3D	HGNC	ENSG00000118420				42	0	0	25	9	26.4706
DOPEY1	0	genome.wustl.edu	37	6	83818737	83818737	+	Silent	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	83818737	83818737	T	A	SNP	DOPEY1	ENST00000349129	human	ensembl	74_37	+1	known	silent	c.429	p.G143	1.000	pfam_Dopey_N,superfamily_ARM-type_fold	pfam_Dopey_N,superfamily_ARM-type_fold	-	no_errors	DOPEY1	HGNC	ENSG00000083097				115	1	0.862069	90	6	6.25
DOPEY1	0	genome.wustl.edu	37	6	83830457	83830457	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	83830457	83830457	A	G	SNP	DOPEY1	ENST00000349129	human	ensembl	74_37	+1	known	missense	c.1046	p.Q349R	1.000	superfamily_ARM-type_fold	pfam_Dopey_N,superfamily_ARM-type_fold	-	no_errors	DOPEY1	HGNC	ENSG00000083097				81	0	0	53	8	13.1148
DOPEY1	0	genome.wustl.edu	37	6	83848231	83848231	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	83848231	83848231	A	G	SNP	DOPEY1	ENST00000349129	human	ensembl	74_37	+1	known	missense	c.4470	p.I1490M	0.985	superfamily_ARM-type_fold	pfam_Dopey_N,superfamily_ARM-type_fold	-	no_errors	DOPEY1	HGNC	ENSG00000083097				98	0	0	71	10	12.3457
DOPEY1	0	genome.wustl.edu	37	6	83863667	83863667	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	83863667	83863667	T	C	SNP	DOPEY1	ENST00000349129	human	ensembl	74_37	+1	known	silent	c.6294	p.S2098	1.000	superfamily_ARM-type_fold	pfam_Dopey_N,superfamily_ARM-type_fold	-	no_errors	DOPEY1	HGNC	ENSG00000083097				147	0	0	112	15	11.811
PGM3	0	genome.wustl.edu	37	6	83888390	83888390	+	Splice_Site	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	83888390	83888390	A	G	SNP	PGM3	ENST00000513973	human	ensembl	74_37	-1	known	splice_site	c.1029+2	e7+2	1.000	-	-	-	no_errors	PGM3	HGNC	ENSG00000013375				103	0	0	69	7	9.21053
MRAP2	0	genome.wustl.edu	37	6	84799100	84799100	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	84799100	84799100	A	G	SNP	MRAP2	ENST00000257776	human	ensembl	74_37	+1	known	missense	c.518	p.D173G	1.000	NULL	NULL	-	no_errors	MRAP2	HGNC	ENSG00000135324				86	0	0	69	22	24.1758
KIAA1009	0	genome.wustl.edu	37	6	84910585	84910585	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	84910585	84910585	T	C	SNP	KIAA1009	ENST00000403245	human	ensembl	74_37	-1	known	missense	c.757	p.N253D	0.000	NULL	NULL	-	no_errors	KIAA1009	HGNC	ENSG00000135315				219	0	0	149	11	6.875
TBX18	0	genome.wustl.edu	37	6	85446856	85446856	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	85446856	85446856	A	G	SNP	TBX18	ENST00000369663	human	ensembl	74_37	-1	known	silent	c.1371	p.Y457	0.727	NULL	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,prints_TF_T-box,pfscan_TF_T-box	-	no_errors	TBX18	HGNC	ENSG00000112837				84	0	0	89	8	8.24742
SNX14	0	genome.wustl.edu	37	6	86267737	86267737	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	86267737	86267737	T	C	SNP	SNX14	ENST00000314673	human	ensembl	74_37	-1	known	silent	c.591	p.A197	0.999	pfam_Phox_assoc,smart_PX_assoc_Snx13,pfscan_Phox_assoc	pfam_Phox_assoc,pfam_Sorting_nexin_C,pfam_Phox,pfam_RGS_dom,superfamily_Phox,superfamily_Regulat_G_prot_signal_superfam,smart_PX_assoc_Snx13,smart_Regulat_G_prot_signal_superfam,smart_Phox,pfscan_Phox,pfscan_Phox_assoc,pfscan_Regulat_G_prot_signal_superfam	-	no_errors	SNX14	HGNC	ENSG00000135317				214	0	0	133	9	6.33803
SNX14	0	genome.wustl.edu	37	6	86281934	86281934	+	Splice_Site	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	86281934	86281934	C	A	SNP	SNX14	ENST00000314673	human	ensembl	74_37	-1	known	splice_site	c.339-1	e4-1	1.000	-	-	-	no_errors	SNX14	HGNC	ENSG00000135317				112	0	0	90	7	7.21649
SYNCRIP	0	genome.wustl.edu	37	6	86329028	86329028	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	86329028	86329028	A	T	SNP	SYNCRIP	ENST00000369622	human	ensembl	74_37	-1	known	missense	c.1116	p.D372E	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	-	no_errors	SYNCRIP	HGNC	ENSG00000135316				119	0	0	83	8	8.79121
ZNF292	0	genome.wustl.edu	37	6	87965271	87965271	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	87965271	87965271	T	G	SNP	ZNF292	ENST00000369577	human	ensembl	74_37	+1	known	missense	c.1924	p.S642A	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF292	HGNC	ENSG00000188994				42	0	0	31	3	8.82353
AKIRIN2	0	genome.wustl.edu	37	6	88385594	88385594	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	88385594	88385594	T	C	SNP	AKIRIN2	ENST00000257787	human	ensembl	74_37	-1	known	silent	c.585	p.G195	1.000	NULL	NULL	-	no_errors	AKIRIN2	HGNC	ENSG00000135334				106	0	0	79	8	9.1954
AKIRIN2	0	genome.wustl.edu	37	6	88387678	88387678	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	88387678	88387678	T	C	SNP	AKIRIN2	ENST00000257787	human	ensembl	74_37	-1	known	silent	c.387	p.S129	1.000	NULL	NULL	-	no_errors	AKIRIN2	HGNC	ENSG00000135334				68	0	0	35	17	32.6923
CNR1	0	genome.wustl.edu	37	6	88853779	88853779	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	88853779	88853779	T	C	SNP	CNR1	ENST00000369499	human	ensembl	74_37	-1	known	silent	c.1215	p.R405	0.955	pfam_7TM_GPCR_olfarory/Srsx,pirsf_Canbinoid_rcpt_1,prints_Cnbnoid_rcpt,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pirsf_Canbinoid_rcpt_1,pfscan_GPCR_Rhodpsn_7TM,prints_Canbinoid_rcpt_1,prints_Cnbnoid_rcpt,prints_GPCR_Rhodpsn	-	no_errors	CNR1	HGNC	ENSG00000118432				91	0	0	80	5	5.88235
GABRR1	0	genome.wustl.edu	37	6	89890057	89890057	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	89890057	89890057	T	C	SNP	GABRR1	ENST00000454853	human	ensembl	74_37	-1	known	missense	c.1100	p.Y367C	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,prints_GABAAa_rho1_rcpt,prints_Neur_channel,prints_GABAAa_rho_rcpt,tigrfam_Neur_channel	-	no_errors	GABRR1	HGNC	ENSG00000146276				47	0	0	39	9	18.75
MDN1	0	genome.wustl.edu	37	6	90372614	90372614	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	90372614	90372614	T	C	SNP	MDN1	ENST00000369393	human	ensembl	74_37	-1	known	missense	c.14309	p.E4770G	1.000	superfamily_ARM-type_fold,pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159				232	0	0	230	14	5.7377
MDN1	0	genome.wustl.edu	37	6	90410395	90410395	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	90410395	90410395	T	C	SNP	MDN1	ENST00000369393	human	ensembl	74_37	-1	known	missense	c.8608	p.R2870G	0.990	pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159				90	0	0	70	8	10.2564
MDN1	0	genome.wustl.edu	37	6	90410508	90410508	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	90410508	90410508	T	C	SNP	MDN1	ENST00000369393	human	ensembl	74_37	-1	known	missense	c.8495	p.Q2832R	0.000	pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159				63	0	0	45	4	8.16327
MDN1	0	genome.wustl.edu	37	6	90491146	90491146	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	90491146	90491146	T	C	SNP	MDN1	ENST00000369393	human	ensembl	74_37	-1	known	missense	c.1615	p.T539A	0.001	superfamily_P-loop_NTPase,smart_AAA+_ATPase,pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159				121	0	0	101	8	7.33945
MDN1	0	genome.wustl.edu	37	6	90494776	90494776	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	90494776	90494776	C	A	SNP	MDN1	ENST00000369393	human	ensembl	74_37	-1	known	missense	c.1404	p.W468C	1.000	superfamily_P-loop_NTPase,smart_AAA+_ATPase,pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159				206	1	0.483092	163	12	6.85714
CASP8AP2	0	genome.wustl.edu	37	6	90571956	90571956	+	RNA	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	90571956	90571956	G	T	SNP	CASP8AP2	ENST00000237177	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	CASP8AP2	HGNC	ENSG00000118412				160	0	0	125	11	8.08824
CASP8AP2	0	genome.wustl.edu	37	6	90577062	90577062	+	RNA	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	90577062	90577062	C	T	SNP	CASP8AP2	ENST00000237177	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.995	-	-	-	no_errors	CASP8AP2	HGNC	ENSG00000118412				68	0	0	55	11	16.6667
CASP8AP2	0	genome.wustl.edu	37	6	90578332	90578332	+	RNA	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	90578332	90578332	A	G	SNP	CASP8AP2	ENST00000237177	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.028	-	-	-	no_errors	CASP8AP2	HGNC	ENSG00000118412				59	0	0	40	5	11.1111
BACH2	0	genome.wustl.edu	37	6	90642371	90642371	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	90642371	90642371	G	A	SNP	BACH2	ENST00000257749	human	ensembl	74_37	-1	known	missense	c.2282	p.A761V	0.807	NULL	pfam_BTB_POZ,pfam_bZIP,superfamily_BTB/POZ_fold,superfamily_TF_DNA-bd,smart_BTB/POZ-like,smart_bZIP,pfscan_BTB/POZ-like,pfscan_bZIP	-	no_errors	BACH2	HGNC	ENSG00000112182				43	0	0	40	10	20
BACH2	0	genome.wustl.edu	37	6	90661298	90661298	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	90661298	90661298	G	A	SNP	BACH2	ENST00000257749	human	ensembl	74_37	-1	known	missense	c.527	p.A176V	0.996	NULL	pfam_BTB_POZ,pfam_bZIP,superfamily_BTB/POZ_fold,superfamily_TF_DNA-bd,smart_BTB/POZ-like,smart_bZIP,pfscan_BTB/POZ-like,pfscan_bZIP	-	no_errors	BACH2	HGNC	ENSG00000112182				104	0	0	89	17	16.0377
BACH2	0	genome.wustl.edu	37	6	90661318	90661318	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	90661318	90661318	C	T	SNP	BACH2	ENST00000257749	human	ensembl	74_37	-1	known	silent	c.507	p.E169	1.000	NULL	pfam_BTB_POZ,pfam_bZIP,superfamily_BTB/POZ_fold,superfamily_TF_DNA-bd,smart_BTB/POZ-like,smart_bZIP,pfscan_BTB/POZ-like,pfscan_bZIP	-	no_errors	BACH2	HGNC	ENSG00000112182				100	0	0	96	6	5.88235
MAP3K7	0	genome.wustl.edu	37	6	91226365	91226365	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	91226365	91226365	T	C	SNP	MAP3K7	ENST00000369329	human	ensembl	74_37	-1	known	missense	c.1676	p.K559R	1.000	pirsf_MAPKKK7	pirsf_MAPKKK7,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP3K7	HGNC	ENSG00000135341				84	0	0	89	11	11
MAP3K7	0	genome.wustl.edu	37	6	91233425	91233425	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	91233425	91233425	A	T	SNP	MAP3K7	ENST00000369329	human	ensembl	74_37	-1	known	missense	c.1434	p.S478R	1.000	pirsf_MAPKKK7	pirsf_MAPKKK7,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP3K7	HGNC	ENSG00000135341				77	0	0	63	8	11.2676
MAP3K7	0	genome.wustl.edu	37	6	91260185	91260185	+	Splice_Site	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	91260185	91260185	A	T	SNP	MAP3K7	ENST00000369329	human	ensembl	74_37	-1	known	splice_site	c.949+2	e9+2	1.000	-	-	-	no_errors	MAP3K7	HGNC	ENSG00000135341				84	0	0	63	4	5.97015
FUT9	0	genome.wustl.edu	37	6	96651601	96651601	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	96651601	96651601	C	T	SNP	FUT9	ENST00000302103	human	ensembl	74_37	+1	known	silent	c.570	p.C190	0.999	pfam_Glyco_trans_10	pfam_Glyco_trans_10	-	no_errors	FUT9	HGNC	ENSG00000172461				69	0	0	65	5	7.14286
UFL1	0	genome.wustl.edu	37	6	96984149	96984149	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	96984149	96984149	C	T	SNP	UFL1	ENST00000369278	human	ensembl	74_37	+1	known	missense	c.685	p.R229C	1.000	pfam_E3_UFM1_ligase_1	pfam_E3_UFM1_ligase_1	-	no_errors	UFL1	HGNC	ENSG00000014123				144	0	0	115	7	5.7377
UFL1	0	genome.wustl.edu	37	6	96986536	96986536	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	96986536	96986536	A	C	SNP	UFL1	ENST00000369278	human	ensembl	74_37	+1	known	missense	c.1008	p.E336D	1.000	NULL	pfam_E3_UFM1_ligase_1	-	no_errors	UFL1	HGNC	ENSG00000014123				93	0	0	51	13	20.3125
MMS22L	0	genome.wustl.edu	37	6	97634560	97634560	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	97634560	97634560	C	T	SNP	MMS22L	ENST00000275053	human	ensembl	74_37	-1	known	missense	c.2046	p.M682I	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	MMS22L	HGNC	ENSG00000146263				60	0	0	29	4	12.1212
FAXC	0	genome.wustl.edu	37	6	99729068	99729068	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	99729068	99729068	T	A	SNP	FAXC	ENST00000389677	human	ensembl	74_37	-1	known	missense	c.1202	p.D401V	1.000	NULL	superfamily_Thioredoxin-like_fold,superfamily_Glutathione-S-Trfase_C-like	-	no_errors	FAXC	HGNC	ENSG00000146267				133	0	0	110	11	9.09091
PNISR	0	genome.wustl.edu	37	6	99849264	99849264	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	99849264	99849264	T	C	SNP	PNISR	ENST00000369239	human	ensembl	74_37	-1	known	missense	c.1570	p.T524A	1.000	NULL	NULL	-	no_errors	PNISR	HGNC	ENSG00000132424				58	0	0	39	3	7.14286
PNISR	0	genome.wustl.edu	37	6	99862500	99862500	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	99862500	99862500	C	A	SNP	PNISR	ENST00000369239	human	ensembl	74_37	-1	known	missense	c.36	p.W12C	1.000	NULL	NULL	-	no_errors	PNISR	HGNC	ENSG00000132424				143	0	0	103	10	8.84956
MEPCE	0	genome.wustl.edu	37	7	100028639	100028639	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	100028639	100028639	C	A	SNP	MEPCE	ENST00000310512	human	ensembl	74_37	+1	known	missense	c.998	p.P333Q	0.791	NULL	pfam_Bin3	-	no_errors	MEPCE	HGNC	ENSG00000146834				148	0	0	117	39	25
NYAP1	0	genome.wustl.edu	37	7	100086267	100086267	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	100086267	100086267	C	T	SNP	NYAP1	ENST00000423930	human	ensembl	74_37	+1	known	missense	c.923	p.P308L	0.910	NULL	NULL	-	no_errors	NYAP1	HGNC	ENSG00000166924				65	0	0	91	14	13.3333
ACTL6B	0	genome.wustl.edu	37	7	100243920	100243920	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	100243920	100243920	C	A	SNP	ACTL6B	ENST00000160382	human	ensembl	74_37	-1	known	missense	c.1152	p.M384I	1.000	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,smart_Actin-related,prints_Actin-related	-	no_errors	ACTL6B	HGNC	ENSG00000077080				29	0	0	19	5	20.8333
ZAN	0	genome.wustl.edu	37	7	100350794	100350794	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	100350794	100350794	A	G	SNP	ZAN	ENST00000546292	human	ensembl	74_37	+1	known	silent	c.3066	p.P1022	0.001	NULL	pfam_VWF_type-D,pfam_MAM_dom,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_ConA-like_lec_gl_sf,superfamily_TIL_dom,smart_MAM_dom,smart_VWC_out,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_MAM_dom	-	no_errors	ZAN	HGNC	ENSG00000146839				57	0	0	56	5	8.19672
EPHB4	0	genome.wustl.edu	37	7	100401097	100401097	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	100401097	100401097	C	T	SNP	EPHB4	ENST00000358173	human	ensembl	74_37	-1	known	missense	c.2950	p.A984T	0.100	pirsf_Tyr_kinase_ephrin_rcpt	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Kinase-like_dom,superfamily_Galactose-bd-like,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHB4	HGNC	ENSG00000196411				14	0	0	9	2	18.1818
TRIP6	0	genome.wustl.edu	37	7	100469238	100469238	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	100469238	100469238	A	G	SNP	TRIP6	ENST00000200457	human	ensembl	74_37	+1	known	missense	c.1073	p.Y358C	1.000	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	TRIP6	HGNC	ENSG00000087077				52	0	0	61	7	10.2941
ACHE	0	genome.wustl.edu	37	7	100490064	100490064	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	100490064	100490064	T	C	SNP	ACHE	ENST00000302913	human	ensembl	74_37	-1	known	missense	c.1444	p.I482V	1.000	pfam_CarbesteraseB,prints_Cholinesterase	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Cholinesterase	-	no_errors	ACHE	HGNC	ENSG00000087085				54	0	0	45	5	10
ACHE	0	genome.wustl.edu	37	7	100491298	100491298	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	100491298	100491298	C	T	SNP	ACHE	ENST00000302913	human	ensembl	74_37	-1	known	missense	c.556	p.A186T	0.982	pfam_CarbesteraseB,pfam_AB_hydrolase_3	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Cholinesterase	-	no_errors	ACHE	HGNC	ENSG00000087085				81	0	0	87	9	9.375
MUC17	0	genome.wustl.edu	37	7	100677683	100677683	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	100677683	100677683	G	A	SNP	MUC17	ENST00000306151	human	ensembl	74_37	+1	known	missense	c.2986	p.A996T	0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_EG-like_dom,pfscan_SEA_dom	-	no_errors	MUC17	HGNC	ENSG00000169876				372	1	0.268097	306	31	9.19881
MUC17	0	genome.wustl.edu	37	7	100679615	100679615	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	100679615	100679615	A	G	SNP	MUC17	ENST00000306151	human	ensembl	74_37	+1	known	missense	c.4918	p.T1640A	0.031	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_EG-like_dom,pfscan_SEA_dom	-	no_errors	MUC17	HGNC	ENSG00000169876				364	1	0.273973	331	28	7.79944
MUC17	0	genome.wustl.edu	37	7	100683690	100683690	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	100683690	100683690	C	T	SNP	MUC17	ENST00000306151	human	ensembl	74_37	+1	known	missense	c.8993	p.P2998L	0.001	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_EG-like_dom,pfscan_SEA_dom	-	no_errors	MUC17	HGNC	ENSG00000169876				386	0	0	356	25	6.56168
MUC17	0	genome.wustl.edu	37	7	100686475	100686475	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	100686475	100686475	A	G	SNP	MUC17	ENST00000306151	human	ensembl	74_37	+1	known	silent	c.11778	p.V3926	0.001	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_EG-like_dom,pfscan_SEA_dom	-	no_errors	MUC17	HGNC	ENSG00000169876				189	0	0	156	15	8.77193
TRIM56	0	genome.wustl.edu	37	7	100732344	100732344	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	100732344	100732344	C	T	SNP	TRIM56	ENST00000306085	human	ensembl	74_37	+1	known	missense	c.1751	p.A584V	0.838	NULL	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_CheY-like_superfamily,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM56	HGNC	ENSG00000169871				123	0	0	105	6	5.40541
AP1S1	0	genome.wustl.edu	37	7	100799969	100799969	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	100799969	100799969	G	A	SNP	AP1S1	ENST00000337619	human	ensembl	74_37	+1	known	missense	c.98	p.R33H	0.994	pfam_AP_mu_sigma_su,superfamily_Longin-like_dom,pirsf_AP_complex_ssu	pfam_AP_mu_sigma_su,superfamily_Longin-like_dom,pirsf_AP_complex_ssu	-	no_errors	AP1S1	HGNC	ENSG00000106367				17	0	0	11	2	15.3846
PLOD3	0	genome.wustl.edu	37	7	100856390	100856390	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	100856390	100856390	T	C	SNP	PLOD3	ENST00000223127	human	ensembl	74_37	-1	known	missense	c.775	p.K259E	1.000	NULL	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	PLOD3	HGNC	ENSG00000106397				38	0	0	35	5	12.5
COL26A1	0	genome.wustl.edu	37	7	101188738	101188738	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	101188738	101188738	C	T	SNP	COL26A1	ENST00000313669	human	ensembl	74_37	+1	known	missense	c.823	p.L275F	0.975	NULL	pfam_EMI_domain,pfam_Collagen,pfscan_EMI_domain	-	no_errors	COL26A1	HGNC	ENSG00000160963				19	0	0	21	5	19.2308
SH2B2	0	genome.wustl.edu	37	7	101960844	101960844	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	101960844	101960844	A	G	SNP	SH2B2	ENST00000536178	human	ensembl	74_37	+1	known	missense	c.1559	p.H520R	1.000	pfam_SH2,smart_SH2,pfscan_SH2	pfam_Phe_ZIP,pfam_Pleckstrin_homology,pfam_SH2,superfamily_Phe_ZIP,smart_Pleckstrin_homology,smart_SH2,pfscan_Pleckstrin_homology,pfscan_SH2,prints_SH2	-	no_errors	SH2B2	HGNC	ENSG00000160999				47	0	0	68	6	8.10811
LRWD1	0	genome.wustl.edu	37	7	102106487	102106487	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	102106487	102106487	C	T	SNP	LRWD1	ENST00000292616	human	ensembl	74_37	+1	known	missense	c.304	p.P102S	1.000	NULL	pfam_WD40_repeat,pfam_Leu-rich_rpt,superfamily_WD40_repeat_dom,smart_Leu-rich_rpt_typical-subtyp,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	LRWD1	HGNC	ENSG00000161036				28	0	0	42	5	10.6383
LRWD1	0	genome.wustl.edu	37	7	102108751	102108751	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	102108751	102108751	C	T	SNP	LRWD1	ENST00000292616	human	ensembl	74_37	+1	known	silent	c.846	p.H282	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,pfam_Leu-rich_rpt,superfamily_WD40_repeat_dom,smart_Leu-rich_rpt_typical-subtyp,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	LRWD1	HGNC	ENSG00000161036				28	0	0	22	3	12
NAPEPLD	0	genome.wustl.edu	37	7	102760524	102760524	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	102760524	102760524	A	T	SNP	NAPEPLD	ENST00000455523	human	ensembl	74_37	-1	known	missense	c.660	p.D220E	0.992	NULL	NULL	-	no_errors	NAPEPLD	HGNC	ENSG00000161048				113	0	0	125	8	6.01504
PMPCB	0	genome.wustl.edu	37	7	102948078	102948078	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	102948078	102948078	T	C	SNP	PMPCB	ENST00000249269	human	ensembl	74_37	+1	known	missense	c.772	p.F258L	1.000	pfam_Peptidase_M16_C,superfamily_Metalloenz_LuxS/M16	pfam_Pept_M16_N,pfam_Peptidase_M16_C,superfamily_Metalloenz_LuxS/M16	-	no_errors	PMPCB	HGNC	ENSG00000105819				54	0	0	50	7	12.2807
RELN	0	genome.wustl.edu	37	7	103124188	103124188	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	103124188	103124188	C	T	SNP	RELN	ENST00000424685	human	ensembl	74_37	-1	known	missense	c.10093	p.V3365I	0.991	pfam_BNR_rpt	pfam_EGF_extracell,pfam_Reeler_dom,pfam_BNR_rpt,superfamily_Sialidases,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Reeler_dom	-	no_errors	RELN	HGNC	ENSG00000189056				149	0	0	126	32	20.2532
RELN	0	genome.wustl.edu	37	7	103130326	103130326	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	103130326	103130326	A	T	SNP	RELN	ENST00000424685	human	ensembl	74_37	-1	known	missense	c.9626	p.I3209N	1.000	NULL	pfam_EGF_extracell,pfam_Reeler_dom,pfam_BNR_rpt,superfamily_Sialidases,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Reeler_dom	-	no_errors	RELN	HGNC	ENSG00000189056				68	0	0	60	5	7.69231
RELN	0	genome.wustl.edu	37	7	103191549	103191549	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	103191549	103191549	C	A	SNP	RELN	ENST00000424685	human	ensembl	74_37	-1	known	missense	c.6267	p.R2089S	1.000	superfamily_Sialidases	pfam_EGF_extracell,pfam_Reeler_dom,pfam_BNR_rpt,superfamily_Sialidases,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Reeler_dom	-	no_errors	RELN	HGNC	ENSG00000189056				44	0	0	49	8	14.0351
RELN	0	genome.wustl.edu	37	7	103230160	103230160	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	103230160	103230160	G	T	SNP	RELN	ENST00000424685	human	ensembl	74_37	-1	known	missense	c.4028	p.A1343E	0.168	superfamily_Growth_fac_rcpt_N_dom	pfam_EGF_extracell,pfam_Reeler_dom,pfam_BNR_rpt,superfamily_Sialidases,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Reeler_dom	-	no_errors	RELN	HGNC	ENSG00000189056				145	0	0	126	12	8.69565
CDHR3	0	genome.wustl.edu	37	7	105641973	105641973	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	105641973	105641973	C	T	SNP	CDHR3	ENST00000317716	human	ensembl	74_37	+1	known	missense	c.779	p.A260V	0.383	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDHR3	HGNC	ENSG00000128536				222	0	0	198	17	7.90698
PIK3CG	0	genome.wustl.edu	37	7	106508059	106508059	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	106508059	106508059	G	A	SNP	PIK3CG	ENST00000359195	human	ensembl	74_37	+1	known	missense	c.53	p.R18Q	0.099	NULL	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_C2_dom,pfam_PI3K_Ras-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CG	HGNC	ENSG00000105851				89	0	0	81	13	13.8298
PRKAR2B	0	genome.wustl.edu	37	7	106781302	106781302	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	106781302	106781302	C	T	SNP	PRKAR2B	ENST00000265717	human	ensembl	74_37	+1	known	missense	c.491	p.S164F	1.000	superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pirsf_cAMP_dep_PK_reg_su,pfscan_cNMP-bd_dom	pfam_cNMP-bd_dom,pfam_cAMP_dep_PK_reg_su_I/II_a/b,superfamily_cNMP-bd-like,superfamily_cAMP_dep_PK_reg_su_I/II_a/b,smart_cAMP_dep_PK_reg_su_I/II_a/b,smart_cNMP-bd_dom,pirsf_cAMP_dep_PK_reg_su,pfscan_cNMP-bd_dom,prints_cAMP/cGMP_kin	-	no_errors	PRKAR2B	HGNC	ENSG00000005249				88	0	0	39	8	17.0213
PRKAR2B	0	genome.wustl.edu	37	7	106799932	106799932	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	106799932	106799932	T	A	SNP	PRKAR2B	ENST00000265717	human	ensembl	74_37	+1	known	missense	c.1162	p.C388S	1.000	superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pirsf_cAMP_dep_PK_reg_su,pfscan_cNMP-bd_dom,prints_cAMP/cGMP_kin	pfam_cNMP-bd_dom,pfam_cAMP_dep_PK_reg_su_I/II_a/b,superfamily_cNMP-bd-like,superfamily_cAMP_dep_PK_reg_su_I/II_a/b,smart_cAMP_dep_PK_reg_su_I/II_a/b,smart_cNMP-bd_dom,pirsf_cAMP_dep_PK_reg_su,pfscan_cNMP-bd_dom,prints_cAMP/cGMP_kin	-	no_errors	PRKAR2B	HGNC	ENSG00000005249				96	0	0	62	9	12.6761
BCAP29	0	genome.wustl.edu	37	7	107258781	107258781	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	107258781	107258781	A	G	SNP	BCAP29	ENST00000379119	human	ensembl	74_37	+1	known	missense	c.778	p.R260G	0.034	NULL	pfam_Bap31	-	no_errors	BCAP29	HGNC	ENSG00000075790				113	0	0	79	5	5.95238
LAMB1	0	genome.wustl.edu	37	7	107575974	107575974	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	107575974	107575974	G	A	SNP	LAMB1	ENST00000222399	human	ensembl	74_37	-1	known	silent	c.4074	p.D1358	0.001	superfamily_P-loop_NTPase	pfam_EGF_laminin,pfam_Laminin_N,superfamily_Prefoldin,superfamily_t-SNARE,superfamily_P-loop_NTPase,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,pfscan_Laminin_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB1	HGNC	ENSG00000091136				260	0	0	313	17	5.15152
DNAJB9	0	genome.wustl.edu	37	7	108213489	108213489	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	108213489	108213489	T	C	SNP	DNAJB9	ENST00000249356	human	ensembl	74_37	+1	known	missense	c.364	p.F122L	1.000	NULL	pfam_DnaJ_domain,superfamily_DnaJ_domain,smart_DnaJ_domain,pfscan_DnaJ_domain,prints_DnaJ_domain	-	no_errors	DNAJB9	HGNC	ENSG00000128590				68	0	0	57	4	6.55738
GPR146	0	genome.wustl.edu	37	7	1097377	1097377	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	1097377	1097377	C	T	SNP	GPR146	ENST00000297468	human	ensembl	74_37	+1	known	missense	c.226	p.L76F	0.922	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR146	HGNC	ENSG00000164849				25	0	0	26	5	16.129
LRRN3	0	genome.wustl.edu	37	7	110763174	110763174	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	110763174	110763174	C	T	SNP	LRRN3	ENST00000308478	human	ensembl	74_37	+1	known	missense	c.346	p.P116S	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_LRR-contain_N,superfamily_Fibronectin_type3,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	LRRN3	HGNC	ENSG00000173114				75	0	0	43	17	28.3333
LRRN3	0	genome.wustl.edu	37	7	110764599	110764599	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	110764599	110764599	A	G	SNP	LRRN3	ENST00000308478	human	ensembl	74_37	+1	known	missense	c.1771	p.I591V	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_LRR-contain_N,superfamily_Fibronectin_type3,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	LRRN3	HGNC	ENSG00000173114				59	0	0	50	7	12.2807
LRRN3	0	genome.wustl.edu	37	7	110764825	110764825	+	Nonsense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	110764825	110764825	T	A	SNP	LRRN3	ENST00000308478	human	ensembl	74_37	+1	known	nonsense	c.1997	p.L666*	1.000	NULL	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_LRR-contain_N,superfamily_Fibronectin_type3,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	LRRN3	HGNC	ENSG00000173114				139	0	0	138	15	9.80392
PHF14	0	genome.wustl.edu	37	7	11101630	11101630	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	11101630	11101630	T	C	SNP	PHF14	ENST00000403050	human	ensembl	74_37	+1	known	silent	c.2572	p.L858	0.975	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	PHF14	HGNC	ENSG00000106443				33	0	0	24	3	11.1111
GPR85	0	genome.wustl.edu	37	7	112723818	112723818	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	112723818	112723818	A	T	SNP	GPR85	ENST00000297146	human	ensembl	74_37	-1	known	missense	c.959	p.F320Y	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR85	HGNC	ENSG00000164604				64	0	0	49	4	7.54717
GPER1	0	genome.wustl.edu	37	7	1131927	1131927	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	1131927	1131927	C	T	SNP	GPER1	ENST00000297469	human	ensembl	74_37	+1	known	missense	c.563	p.A188V	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPER1	HGNC	ENSG00000164850				26	0	0	27	3	10
PPP1R3A	0	genome.wustl.edu	37	7	113519801	113519801	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	113519801	113519801	C	T	SNP	PPP1R3A	ENST00000284601	human	ensembl	74_37	-1	known	missense	c.1346	p.G449D	0.000	NULL	pfam_CBM_21,pfscan_CBM_21	-	no_errors	PPP1R3A	HGNC	ENSG00000154415				160	0	0	96	39	28.8889
PPP1R3A	0	genome.wustl.edu	37	7	113558357	113558357	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	113558357	113558357	T	C	SNP	PPP1R3A	ENST00000284601	human	ensembl	74_37	-1	known	missense	c.695	p.Q232R	1.000	NULL	pfam_CBM_21,pfscan_CBM_21	-	no_errors	PPP1R3A	HGNC	ENSG00000154415				182	0	0	137	9	6.16438
THSD7A	0	genome.wustl.edu	37	7	11422208	11422208	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	11422208	11422208	C	A	SNP	THSD7A	ENST00000423059	human	ensembl	74_37	-1	known	missense	c.4447	p.A1483S	1.000	NULL	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD7A	HGNC	ENSG00000005108				50	0	0	30	7	18.9189
FOXP2	0	genome.wustl.edu	37	7	114304425	114304425	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	114304425	114304425	A	G	SNP	FOXP2	ENST00000408937	human	ensembl	74_37	+1	known	missense	c.2012	p.N671S	1.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXP2	HGNC	ENSG00000128573				87	0	0	51	8	13.5593
MET	0	genome.wustl.edu	37	7	116339390	116339390	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	116339390	116339390	C	T	SNP	MET	ENST00000318493	human	ensembl	74_37	+1	known	silent	c.252	p.Y84	1.000	pirsf_Tyr_kinase_HGF/MSP_rcpt,pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pirsf_Tyr_kinase_HGF/MSP_rcpt,pfam_Semap_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Kinase-like_dom,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Semap_dom,pfscan_Prot_kinase_dom	-	no_errors	MET	HGNC	ENSG00000105976				129	1	0.769231	76	7	8.43373
MET	0	genome.wustl.edu	37	7	116339813	116339813	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	116339813	116339813	T	C	SNP	MET	ENST00000318493	human	ensembl	74_37	+1	known	silent	c.675	p.G225	0.725	pirsf_Tyr_kinase_HGF/MSP_rcpt,pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pirsf_Tyr_kinase_HGF/MSP_rcpt,pfam_Semap_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Kinase-like_dom,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Semap_dom,pfscan_Prot_kinase_dom	-	no_errors	MET	HGNC	ENSG00000105976				243	2	0.816327	180	19	9.54774
WNT2	0	genome.wustl.edu	37	7	116955236	116955236	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	116955236	116955236	A	T	SNP	WNT2	ENST00000265441	human	ensembl	74_37	-1	known	missense	c.477	p.D159E	0.995	pfam_Wnt,smart_Wnt,prints_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt2	-	no_errors	WNT2	HGNC	ENSG00000105989				171	0	0	124	8	6.06061
WNT2	0	genome.wustl.edu	37	7	116960775	116960775	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	116960775	116960775	C	T	SNP	WNT2	ENST00000265441	human	ensembl	74_37	-1	known	silent	c.156	p.R52	0.988	pfam_Wnt,smart_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt2	-	no_errors	WNT2	HGNC	ENSG00000105989				30	0	0	25	4	13.7931
CTTNBP2	0	genome.wustl.edu	37	7	117431265	117431265	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	117431265	117431265	A	G	SNP	CTTNBP2	ENST00000160373	human	ensembl	74_37	-1	known	missense	c.1985	p.I662T	1.000	NULL	pfam_Cortactin-binding_p2_N,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	CTTNBP2	HGNC	ENSG00000077063				109	0	0	89	13	12.7451
ANKRD7	0	genome.wustl.edu	37	7	117876922	117876922	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	117876922	117876922	T	C	SNP	ANKRD7	ENST00000357099	human	ensembl	74_37	+1	known	silent	c.714	p.C238	0.000	smart_Ankyrin_rpt	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD7	HGNC	ENSG00000106013				218	0	0	193	13	6.31068
TSPAN12	0	genome.wustl.edu	37	7	120496772	120496772	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	120496772	120496772	C	T	SNP	TSPAN12	ENST00000222747	human	ensembl	74_37	-1	known	missense	c.46	p.A16T	1.000	pfam_Tetraspanin/Peripherin,prints_Tetraspanin	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	TSPAN12	HGNC	ENSG00000106025				52	0	0	39	6	13.3333
PTPRZ1	0	genome.wustl.edu	37	7	121650696	121650696	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	121650696	121650696	A	C	SNP	PTPRZ1	ENST00000393386	human	ensembl	74_37	+1	known	missense	c.1596	p.E532D	0.269	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Carbonic_anhydrase_a,pfam_Fibronectin_type3,superfamily_Carbonic_anhydrase_a,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Carbonic_anhydrase_a,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRZ1	HGNC	ENSG00000106278				123	0	0	86	7	7.52688
PTPRZ1	0	genome.wustl.edu	37	7	121652348	121652348	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	121652348	121652348	C	T	SNP	PTPRZ1	ENST00000393386	human	ensembl	74_37	+1	known	missense	c.3248	p.A1083V	0.000	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Carbonic_anhydrase_a,pfam_Fibronectin_type3,superfamily_Carbonic_anhydrase_a,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Carbonic_anhydrase_a,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRZ1	HGNC	ENSG00000106278				127	0	0	65	15	18.75
PTPRZ1	0	genome.wustl.edu	37	7	121694043	121694043	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	121694043	121694043	G	A	SNP	PTPRZ1	ENST00000393386	human	ensembl	74_37	+1	known	nonsense	c.6332	p.W2111*	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Carbonic_anhydrase_a,pfam_Fibronectin_type3,superfamily_Carbonic_anhydrase_a,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Carbonic_anhydrase_a,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRZ1	HGNC	ENSG00000106278				186	0	0	164	11	6.28571
AASS	0	genome.wustl.edu	37	7	121719675	121719675	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	121719675	121719675	T	C	SNP	AASS	ENST00000393376	human	ensembl	74_37	-1	known	missense	c.2372	p.N791S	0.000	pfam_Saccharopine_DH/HSpermid_syn	pfam_Saccharopine_DH/HSpermid_syn,pfam_AlaDH/PNT_NAD(H)-bd,pfam_AlaDH/PNT_N	-	no_errors	AASS	HGNC	ENSG00000008311				64	0	0	57	6	9.52381
AASS	0	genome.wustl.edu	37	7	121773641	121773641	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	121773641	121773641	A	G	SNP	AASS	ENST00000393376	human	ensembl	74_37	-1	known	missense	c.140	p.I47T	1.000	pfam_AlaDH/PNT_N	pfam_Saccharopine_DH/HSpermid_syn,pfam_AlaDH/PNT_NAD(H)-bd,pfam_AlaDH/PNT_N	-	no_errors	AASS	HGNC	ENSG00000008311				91	0	0	77	7	8.33333
CADPS2	0	genome.wustl.edu	37	7	121960379	121960379	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	121960379	121960379	T	C	SNP	CADPS2	ENST00000449022	human	ensembl	74_37	-1	known	missense	c.3731	p.D1244G	1.000	NULL	pfam_Ca-dep_secretion_activator,pfam_Pleckstrin_homology,superfamily_C2_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	CADPS2	HGNC	ENSG00000081803				242	0	0	189	10	5.02513
RNF148	0	genome.wustl.edu	37	7	122342388	122342388	+	Silent	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	122342388	122342388	T	A	SNP	RNF148	ENST00000434824	human	ensembl	74_37	-1	known	silent	c.417	p.V139	0.946	pfam_Protease-assoc_domain	pfam_Protease-assoc_domain,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF148	HGNC	ENSG00000235631				375	0	0	340	28	7.6087
TAS2R16	0	genome.wustl.edu	37	7	122635559	122635559	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	122635559	122635559	G	A	SNP	TAS2R16	ENST00000249284	human	ensembl	74_37	-1	known	missense	c.130	p.P44S	0.682	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R16	HGNC	ENSG00000128519				82	0	0	49	16	24.6154
TAS2R16	0	genome.wustl.edu	37	7	122635650	122635650	+	Silent	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	122635650	122635650	G	T	SNP	TAS2R16	ENST00000249284	human	ensembl	74_37	-1	known	silent	c.39	p.I13	0.015	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R16	HGNC	ENSG00000128519				53	0	0	39	4	9.30233
TMEM106B	0	genome.wustl.edu	37	7	12271530	12271530	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	12271530	12271530	G	A	SNP	TMEM106B	ENST00000396667	human	ensembl	74_37	+1	known	missense	c.754	p.D252N	1.000	pfam_DUF1356_TMEM106	pfam_DUF1356_TMEM106	-	no_errors	TMEM106B	HGNC	ENSG00000106460				72	0	0	33	4	10.8108
GPR37	0	genome.wustl.edu	37	7	124387074	124387074	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	124387074	124387074	A	G	SNP	GPR37	ENST00000303921	human	ensembl	74_37	-1	known	silent	c.1347	p.C449	0.996	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPR37_orph	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPR37_orph,prints_GPCR_Rhodpsn	-	no_errors	GPR37	HGNC	ENSG00000170775				93	0	0	69	18	20.6897
GRM8	0	genome.wustl.edu	37	7	126173162	126173162	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	126173162	126173162	G	A	SNP	GRM8	ENST00000339582	human	ensembl	74_37	-1	known	silent	c.2274	p.L758	1.000	pfam_GPCR_3_C,prints_GPCR_3,pfscan_GPCR_3_C	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_8,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_4,pfscan_GPCR_3_C	-	no_errors	GRM8	HGNC	ENSG00000179603				63	0	0	67	5	6.94444
FSCN3	0	genome.wustl.edu	37	7	127238634	127238634	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	127238634	127238634	A	G	SNP	FSCN3	ENST00000265825	human	ensembl	74_37	+1	known	missense	c.1106	p.N369S	0.411	pfam_Fascin-domain,superfamily_Actin_cross-linking	pfam_Fascin-domain,superfamily_Actin_cross-linking	-	no_errors	FSCN3	HGNC	ENSG00000106328				110	1	0.900901	115	9	7.25806
UNCX	0	genome.wustl.edu	37	7	1273256	1273256	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	1273256	1273256	C	T	SNP	UNCX	ENST00000316333	human	ensembl	74_37	+1	known	silent	c.375	p.N125	0.992	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	UNCX	HGNC	ENSG00000164853				64	0	0	34	9	20.9302
SND1	0	genome.wustl.edu	37	7	127361418	127361418	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	127361418	127361418	C	T	SNP	SND1	ENST00000354725	human	ensembl	74_37	+1	known	silent	c.1116	p.S372	1.000	pfam_Staphylococal_nuclease_OB-fold,superfamily_Staphylococal_nuclease_OB-fold,smart_Staphylococal_nuclease_OB-fold,pirsf_Silence_cplx_Nase-comp_TudorSN,pfscan_Staphylococal_nuclease_OB-fold	pfam_Staphylococal_nuclease_OB-fold,pfam_Tudor,superfamily_Staphylococal_nuclease_OB-fold,smart_Staphylococal_nuclease_OB-fold,smart_Tudor,pirsf_Silence_cplx_Nase-comp_TudorSN,pfscan_Tudor,pfscan_Staphylococal_nuclease_OB-fold	-	no_errors	SND1	HGNC	ENSG00000197157				98	0	0	71	8	10.1266
SND1	0	genome.wustl.edu	37	7	127731895	127731895	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	127731895	127731895	G	A	SNP	SND1	ENST00000354725	human	ensembl	74_37	+1	known	missense	c.2629	p.E877K	1.000	pfam_Staphylococal_nuclease_OB-fold,superfamily_Staphylococal_nuclease_OB-fold,pirsf_Silence_cplx_Nase-comp_TudorSN	pfam_Staphylococal_nuclease_OB-fold,pfam_Tudor,superfamily_Staphylococal_nuclease_OB-fold,smart_Staphylococal_nuclease_OB-fold,smart_Tudor,pirsf_Silence_cplx_Nase-comp_TudorSN,pfscan_Tudor,pfscan_Staphylococal_nuclease_OB-fold	-	no_errors	SND1	HGNC	ENSG00000197157				184	0	0	169	11	6.11111
IMPDH1	0	genome.wustl.edu	37	7	128038643	128038643	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	128038643	128038643	C	T	SNP	IMPDH1	ENST00000338791	human	ensembl	74_37	-1	known	missense	c.899	p.C300Y	0.005	pfam_IMP_DH_GMPRt,pfam_CBS_dom,smart_CBS_dom,tigrfam_IMP_DH	pfam_IMP_DH_GMPRt,pfam_CBS_dom,pfam_2Npropane_dOase,pfam_FMN-dep_DH,smart_CBS_dom,tigrfam_IMP_DH	-	no_errors	IMPDH1	HGNC	ENSG00000106348				100	1	0.990099	95	33	25.7812
FLNC	0	genome.wustl.edu	37	7	128470877	128470877	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	128470877	128470877	C	T	SNP	FLNC	ENST00000325888	human	ensembl	74_37	+1	known	silent	c.186	p.R62	0.998	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNC	HGNC	ENSG00000128591				20	0	0	24	4	14.2857
FLNC	0	genome.wustl.edu	37	7	128478072	128478072	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	128478072	128478072	G	A	SNP	FLNC	ENST00000325888	human	ensembl	74_37	+1	known	missense	c.1001	p.R334H	1.000	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNC	HGNC	ENSG00000128591				85	0	0	65	4	5.7971
TNPO3	0	genome.wustl.edu	37	7	128610202	128610202	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	128610202	128610202	C	T	SNP	TNPO3	ENST00000393245	human	ensembl	74_37	-1	known	silent	c.2700	p.P900	1.000	NULL	pfam_Exportin-1/Importin-b-like,superfamily_ARM-type_fold	-	no_errors	TNPO3	HGNC	ENSG00000064419				108	0	0	108	10	8.47458
SMO	0	genome.wustl.edu	37	7	128843398	128843398	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	128843398	128843398	T	G	SNP	SMO	ENST00000249373	human	ensembl	74_37	+1	known	missense	c.505	p.C169G	1.000	pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom	pfam_Frizzled,pfam_Frizzled_dom,pfam_GPCR_2_secretin-like,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	SMO	HGNC	ENSG00000128602				28	0	0	21	4	16
STRIP2	0	genome.wustl.edu	37	7	129122759	129122759	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	129122759	129122759	T	A	SNP	STRIP2	ENST00000249344	human	ensembl	74_37	+1	known	missense	c.2126	p.V709D	1.000	pfam_DUF3402	pfam_DUF3402,pfam_N1221	-	no_errors	STRIP2	HGNC	ENSG00000128578				93	0	0	71	8	10.1266
STRIP2	0	genome.wustl.edu	37	7	129122851	129122851	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	129122851	129122851	C	T	SNP	STRIP2	ENST00000249344	human	ensembl	74_37	+1	known	missense	c.2218	p.R740C	1.000	pfam_DUF3402	pfam_DUF3402,pfam_N1221	-	no_errors	STRIP2	HGNC	ENSG00000128578				69	0	0	51	12	19.0476
MKLN1	0	genome.wustl.edu	37	7	131113829	131113829	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	131113829	131113829	A	G	SNP	MKLN1	ENST00000352689	human	ensembl	74_37	+1	known	silent	c.885	p.Q295	1.000	pfam_Kelch_1	pfam_Muskelin_N,pfam_Kelch_1,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,smart_LisH_dimerisation,pfscan_LisH_dimerisation,pfscan_CTLH_C	-	no_errors	MKLN1	HGNC	ENSG00000128585				113	0	0	76	9	10.5882
PLXNA4	0	genome.wustl.edu	37	7	131883351	131883351	+	Silent	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	131883351	131883351	A	C	SNP	PLXNA4	ENST00000321063	human	ensembl	74_37	-1	known	silent	c.2631	p.T877	0.997	pfam_IPT,superfamily_Ig_E-set,smart_IPT	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA4	HGNC	ENSG00000221866				86	0	0	79	11	12.2222
PLXNA4	0	genome.wustl.edu	37	7	131982870	131982870	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	131982870	131982870	A	G	SNP	PLXNA4	ENST00000321063	human	ensembl	74_37	-1	known	missense	c.1483	p.Y495H	1.000	superfamily_Semap_dom,pfscan_Semap_dom	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA4	HGNC	ENSG00000221866				81	0	0	78	6	7.14286
PLXNA4	0	genome.wustl.edu	37	7	132192892	132192892	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	132192892	132192892	C	T	SNP	PLXNA4	ENST00000321063	human	ensembl	74_37	-1	known	silent	c.561	p.T187	0.046	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA4	HGNC	ENSG00000221866				107	0	0	108	8	6.89655
EXOC4	0	genome.wustl.edu	37	7	132959843	132959843	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	132959843	132959843	C	T	SNP	EXOC4	ENST00000253861	human	ensembl	74_37	+1	known	missense	c.193	p.H65Y	1.000	pfam_Sec8_exocyst	pfam_Sec8_exocyst	-	no_errors	EXOC4	HGNC	ENSG00000131558				94	0	0	58	18	23.6842
EXOC4	0	genome.wustl.edu	37	7	133002097	133002097	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	133002097	133002097	G	A	SNP	EXOC4	ENST00000253861	human	ensembl	74_37	+1	known	missense	c.716	p.R239Q	0.996	NULL	pfam_Sec8_exocyst	-	no_errors	EXOC4	HGNC	ENSG00000131558				212	1	0.469484	169	26	13.3333
AKR1B1	0	genome.wustl.edu	37	7	134133174	134133174	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	134133174	134133174	G	A	SNP	AKR1B1	ENST00000285930	human	ensembl	74_37	-1	known	silent	c.624	p.T208	0.143	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_Aldo/keto_reductase_subgr	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_Aldo/keto_reductase_subgr	-	no_errors	AKR1B1	HGNC	ENSG00000085662				91	0	0	72	17	19.1011
AKR1B10	0	genome.wustl.edu	37	7	134221503	134221503	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	134221503	134221503	A	G	SNP	AKR1B10	ENST00000359579	human	ensembl	74_37	+1	known	silent	c.531	p.K177	0.969	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_Aldo/keto_reductase_subgr	-	no_errors	AKR1B10	HGNC	ENSG00000198074				180	0	0	138	15	9.80392
BPGM	0	genome.wustl.edu	37	7	134346583	134346583	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	134346583	134346583	T	C	SNP	BPGM	ENST00000344924	human	ensembl	74_37	+1	known	silent	c.324	p.G108	0.876	pfam_His_Pase_superF_clade-1,smart_His_Pase_superF_clade-1,tigrfam_Phosphogly_mut1	pfam_His_Pase_superF_clade-1,smart_His_Pase_superF_clade-1,tigrfam_Phosphogly_mut1	-	no_errors	BPGM	HGNC	ENSG00000172331				80	0	0	54	5	8.47458
CNOT4	0	genome.wustl.edu	37	7	135098336	135098336	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	135098336	135098336	G	A	SNP	CNOT4	ENST00000541284	human	ensembl	74_37	-1	known	silent	c.588	p.C196	1.000	NULL	pfam_RRM_dom,smart_RRM_dom_euk,pfscan_Znf_RING,pfscan_RRM_dom	-	no_errors	CNOT4	HGNC	ENSG00000080802				66	0	0	40	6	13.0435
NUP205	0	genome.wustl.edu	37	7	135292081	135292081	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	135292081	135292081	G	A	SNP	NUP205	ENST00000285968	human	ensembl	74_37	+1	known	missense	c.3157	p.V1053M	0.248	pfam_Nup186/Nup192/Nup205	pfam_Nup186/Nup192/Nup205	-	no_errors	NUP205	HGNC	ENSG00000155561				54	0	0	52	4	7.14286
NUP205	0	genome.wustl.edu	37	7	135304309	135304309	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	135304309	135304309	G	A	SNP	NUP205	ENST00000285968	human	ensembl	74_37	+1	known	missense	c.4102	p.A1368T	0.153	pfam_Nup186/Nup192/Nup205	pfam_Nup186/Nup192/Nup205	-	no_errors	NUP205	HGNC	ENSG00000155561				71	0	0	61	6	8.95522
NUP205	0	genome.wustl.edu	37	7	135333207	135333207	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	135333207	135333207	A	T	SNP	NUP205	ENST00000285968	human	ensembl	74_37	+1	known	missense	c.5942	p.D1981V	1.000	NULL	pfam_Nup186/Nup192/Nup205	-	no_errors	NUP205	HGNC	ENSG00000155561				105	0	0	100	13	11.5044
SLC13A4	0	genome.wustl.edu	37	7	135392908	135392908	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	135392908	135392908	G	A	SNP	SLC13A4	ENST00000354042	human	ensembl	74_37	-1	known	missense	c.319	p.R107C	1.000	pfam_Na/sul_symport	pfam_Na/sul_symport,pfam_Cit_transptr-like_dom,pfam_DctM	-	no_errors	SLC13A4	HGNC	ENSG00000164707				118	0	0	109	11	9.16667
MIR490	0	genome.wustl.edu	37	7	136587912	136587912	+	RNA	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	136587912	136587912	T	C	SNP	MIR490	ENST00000608269	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	hsa-mir-490	miRBase	ENSG00000234352				174	0	0	159	30	15.873
DGKI	0	genome.wustl.edu	37	7	137282651	137282651	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	137282651	137282651	A	C	SNP	DGKI	ENST00000288490	human	ensembl	74_37	-1	known	missense	c.1253	p.L418R	1.000	pfam_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kinase_cat_dom	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	DGKI	HGNC	ENSG00000157680				39	0	0	27	3	10
CREB3L2	0	genome.wustl.edu	37	7	137590509	137590509	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	137590509	137590509	A	G	SNP	CREB3L2	ENST00000330387	human	ensembl	74_37	-1	known	missense	c.854	p.L285S	1.000	superfamily_TF_DNA-bd	pfam_bZIP,superfamily_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	CREB3L2	HGNC	ENSG00000182158				198	1	0.502513	197	15	7.07547
AKR1D1	0	genome.wustl.edu	37	7	137773399	137773399	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	137773399	137773399	A	G	SNP	AKR1D1	ENST00000242375	human	ensembl	74_37	+1	known	missense	c.146	p.Y49C	0.995	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_Aldo/keto_reductase_subgr	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_Aldo/keto_reductase_subgr	-	no_errors	AKR1D1	HGNC	ENSG00000122787				63	0	0	42	11	20.7547
TRIM24	0	genome.wustl.edu	37	7	138210040	138210040	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	138210040	138210040	A	G	SNP	TRIM24	ENST00000343526	human	ensembl	74_37	+1	known	silent	c.819	p.L273	0.996	smart_Bbox_C	pfam_Bromodomain,pfam_Znf_B-box,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_B-box,pfscan_Znf_PHD-finger,pfscan_Znf_RING,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	TRIM24	HGNC	ENSG00000122779				99	0	0	50	6	10.7143
KIAA1549	0	genome.wustl.edu	37	7	138556002	138556002	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	138556002	138556002	A	G	SNP	KIAA1549	ENST00000422774	human	ensembl	74_37	-1	known	silent	c.4452	p.S1484	0.990	NULL	NULL	-	no_errors	KIAA1549	HGNC	ENSG00000122778				59	0	0	57	4	6.55738
KIAA1549	0	genome.wustl.edu	37	7	138603255	138603255	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	138603255	138603255	A	G	SNP	KIAA1549	ENST00000422774	human	ensembl	74_37	-1	known	missense	c.1117	p.S373P	0.001	NULL	NULL	-	no_errors	KIAA1549	HGNC	ENSG00000122778				120	0	0	104	11	9.56522
KIAA1549	0	genome.wustl.edu	37	7	138603418	138603418	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	138603418	138603418	A	G	SNP	KIAA1549	ENST00000422774	human	ensembl	74_37	-1	known	silent	c.954	p.S318	0.000	NULL	NULL	-	no_errors	KIAA1549	HGNC	ENSG00000122778				106	0	0	100	8	7.40741
KIAA1549	0	genome.wustl.edu	37	7	138603691	138603691	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	138603691	138603691	A	T	SNP	KIAA1549	ENST00000422774	human	ensembl	74_37	-1	known	missense	c.681	p.S227R	0.000	NULL	NULL	-	no_errors	KIAA1549	HGNC	ENSG00000122778				133	0	0	110	10	8.33333
ZC3HAV1	0	genome.wustl.edu	37	7	138764925	138764925	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	138764925	138764925	A	G	SNP	ZC3HAV1	ENST00000242351	human	ensembl	74_37	-1	known	silent	c.762	p.F254	0.000	NULL	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_WWE-dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	ZC3HAV1	HGNC	ENSG00000105939				273	0	0	240	20	7.69231
UBN2	0	genome.wustl.edu	37	7	138968607	138968607	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	138968607	138968607	A	G	SNP	UBN2	ENST00000473989	human	ensembl	74_37	+1	known	missense	c.2956	p.T986A	0.065	NULL	NULL	-	no_errors	UBN2	HGNC	ENSG00000157741				75	0	0	84	7	7.69231
KLRG2	0	genome.wustl.edu	37	7	139168212	139168212	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	139168212	139168212	G	A	SNP	KLRG2	ENST00000340940	human	ensembl	74_37	-1	known	silent	c.177	p.G59	0.000	NULL	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	KLRG2	HGNC	ENSG00000188883				28	0	0	26	7	21.2121
HIPK2	0	genome.wustl.edu	37	7	139415909	139415909	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	139415909	139415909	C	A	SNP	HIPK2	ENST00000406875	human	ensembl	74_37	-1	known	missense	c.925	p.A309S	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	HIPK2	HGNC	ENSG00000064393				104	1	0.952381	113	9	7.37705
JHDM1D	0	genome.wustl.edu	37	7	139826622	139826622	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	139826622	139826622	T	A	SNP	JHDM1D	ENST00000397560	human	ensembl	74_37	-1	known	missense	c.703	p.M235L	1.000	smart_JmjC_dom,pfscan_JmjC_dom	pfam_JmjC_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_JmjC_dom,pfscan_JmjC_dom,pfscan_Znf_PHD-finger	-	no_errors	JHDM1D	HGNC	ENSG00000006459				54	0	0	49	7	12.5
BRAF	0	genome.wustl.edu	37	7	140439719	140439719	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	140439719	140439719	G	A	SNP	BRAF	ENST00000288602	human	ensembl	74_37	-1	known	silent	c.2020	p.L674	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Raf-like_ras-bd,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Kinase-like_dom,smart_Raf-like_ras-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Raf-like_ras-bd,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_DAG/PE-bd	-	no_errors	BRAF	HGNC	ENSG00000157764				71	0	0	62	6	8.82353
AGK	0	genome.wustl.edu	37	7	141341172	141341172	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	141341172	141341172	C	T	SNP	AGK	ENST00000355413	human	ensembl	74_37	+1	known	missense	c.851	p.A284V	0.020	NULL	pfam_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kinase_cat_dom	-	no_errors	AGK	HGNC	ENSG00000006530				76	0	0	34	12	26.087
TAS2R3	0	genome.wustl.edu	37	7	141464641	141464641	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	141464641	141464641	C	T	SNP	TAS2R3	ENST00000247879	human	ensembl	74_37	+1	known	missense	c.683	p.A228V	1.000	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R3	HGNC	ENSG00000127362				51	0	0	53	5	8.62069
TAS2R4	0	genome.wustl.edu	37	7	141478688	141478688	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	141478688	141478688	C	T	SNP	TAS2R4	ENST00000247881	human	ensembl	74_37	+1	known	silent	c.400	p.L134	0.010	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R4	HGNC	ENSG00000127364				205	0	0	130	44	25.2874
MGAM	0	genome.wustl.edu	37	7	141724940	141724940	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	141724940	141724940	A	G	SNP	MGAM	ENST00000549489	human	ensembl	74_37	+1	known	missense	c.973	p.N325D	1.000	superfamily_Gal_mutarotase_SF_dom	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Gal_mutarotase_SF_dom,smart_P_trefoil	-	no_errors	MGAM	HGNC	ENSG00000257335				100	0	0	56	5	8.19672
MGAM	0	genome.wustl.edu	37	7	141765238	141765238	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	141765238	141765238	G	A	SNP	MGAM	ENST00000549489	human	ensembl	74_37	+1	known	missense	c.4588	p.A1530T	0.023	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Gal_mutarotase_SF_dom,smart_P_trefoil	-	no_errors	MGAM	HGNC	ENSG00000257335				15	0	0	17	3	15
TRPV5	0	genome.wustl.edu	37	7	142611854	142611854	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	142611854	142611854	C	T	SNP	TRPV5	ENST00000265310	human	ensembl	74_37	-1	known	missense	c.1475	p.R492H	1.000	tigrfam_TRP_channel	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_TRPV5/TRPV6,prints_TRPV5,prints_Ankyrin_rpt,tigrfam_TRP_channel	-	no_errors	TRPV5	HGNC	ENSG00000127412				33	0	0	22	7	24.1379
C7orf34	0	genome.wustl.edu	37	7	142637475	142637475	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	142637475	142637475	C	T	SNP	C7orf34	ENST00000409607	human	ensembl	74_37	+1	known	missense	c.245	p.A82V	0.870	NULL	NULL	-	no_errors	C7orf34	HGNC	ENSG00000165131				91	0	0	78	6	7.14286
KEL	0	genome.wustl.edu	37	7	142638398	142638398	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	142638398	142638398	A	G	SNP	KEL	ENST00000355265	human	ensembl	74_37	-1	known	missense	c.2140	p.Y714H	0.000	pfam_Peptidase_M13_C	pfam_Peptidase_M13_N,pfam_Peptidase_M13_C,prints_Peptidase_M13_C	-	no_errors	KEL	HGNC	ENSG00000197993				100	0	0	86	5	5.49451
KEL	0	genome.wustl.edu	37	7	142640415	142640415	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	142640415	142640415	G	A	SNP	KEL	ENST00000355265	human	ensembl	74_37	-1	known	silent	c.1719	p.G573	0.941	pfam_Peptidase_M13_C,prints_Peptidase_M13_C	pfam_Peptidase_M13_N,pfam_Peptidase_M13_C,prints_Peptidase_M13_C	-	no_errors	KEL	HGNC	ENSG00000197993				38	0	0	39	4	9.30233
TAS2R39	0	genome.wustl.edu	37	7	142881269	142881269	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	142881269	142881269	G	T	SNP	TAS2R39	ENST00000446620	human	ensembl	74_37	+1	known	missense	c.758	p.S253I	1.000	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R39	HGNC	ENSG00000236398				101	0	0	105	6	5.40541
TAS2R39	0	genome.wustl.edu	37	7	142881406	142881406	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	142881406	142881406	A	G	SNP	TAS2R39	ENST00000446620	human	ensembl	74_37	+1	known	missense	c.895	p.I299V	0.038	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R39	HGNC	ENSG00000236398				55	0	0	43	8	15.6863
TAS2R40	0	genome.wustl.edu	37	7	142919425	142919425	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	142919425	142919425	G	A	SNP	TAS2R40	ENST00000408947	human	ensembl	74_37	+1	known	missense	c.254	p.R85Q	0.000	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R40	HGNC	ENSG00000221937				122	0	0	96	12	11.1111
CLCN1	0	genome.wustl.edu	37	7	143039041	143039041	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	143039041	143039041	T	C	SNP	CLCN1	ENST00000343257	human	ensembl	74_37	+1	known	silent	c.1602	p.G534	0.004	pfam_Cl-channel_volt-gated,superfamily_Cl-channel_core,prints_Cl-channel_volt-gated	pfam_Cl-channel_volt-gated,pfam_CBS_dom,superfamily_Cl-channel_core,prints_Cl-channel_volt-gated,prints_Cl_channel-1	-	no_errors	CLCN1	HGNC	ENSG00000188037				86	0	0	47	5	9.61538
OR2A5	0	genome.wustl.edu	37	7	143747579	143747579	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	143747579	143747579	C	A	SNP	OR2A5	ENST00000408906	human	ensembl	74_37	+1	known	missense	c.85	p.L29I	0.014	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2A5	HGNC	ENSG00000221836				123	0	0	130	9	6.47482
TPK1	0	genome.wustl.edu	37	7	144150652	144150652	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	144150652	144150652	C	T	SNP	TPK1	ENST00000360057	human	ensembl	74_37	-1	known	missense	c.718	p.A240T	1.000	superfamily_Thiamin_PyroPKinase_B1-bd,pirsf_Thiamin_pyrophosphokinase_euk	pfam_TPK_catalytic,pfam_Thiamin_PyroPKinase_B1-bd,superfamily_TPK_catalytic,superfamily_Thiamin_PyroPKinase_B1-bd,pirsf_Thiamin_pyrophosphokinase_euk,tigrfam_Thi_PPkinase	-	no_errors	TPK1	HGNC	ENSG00000196511				191	0	0	166	13	7.26257
CNTNAP2	0	genome.wustl.edu	37	7	146805249	146805249	+	Silent	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	146805249	146805249	T	A	SNP	CNTNAP2	ENST00000361727	human	ensembl	74_37	+1	known	silent	c.561	p.V187	0.982	superfamily_ConA-like_lec_gl_sf,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,pfam_EG-like_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EG-like_dom,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP2	HGNC	ENSG00000174469				100	0	0	60	8	11.7647
DGKB	0	genome.wustl.edu	37	7	14724957	14724957	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	14724957	14724957	G	A	SNP	DGKB	ENST00000258767	human	ensembl	74_37	-1	known	nonsense	c.742	p.R248*	0.999	pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_Kinase_C-like_PE/DAG-bd	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_EF_hand_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,pfscan_EF_hand_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	DGKB	HGNC	ENSG00000136267				91	0	0	47	18	27.6923
CNTNAP2	0	genome.wustl.edu	37	7	147844651	147844651	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	147844651	147844651	A	G	SNP	CNTNAP2	ENST00000361727	human	ensembl	74_37	+1	known	missense	c.2623	p.T875A	0.002	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,pfam_EG-like_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EG-like_dom,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP2	HGNC	ENSG00000174469				150	0	0	118	12	9.23077
CUL1	0	genome.wustl.edu	37	7	148497652	148497652	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	148497652	148497652	A	G	SNP	CUL1	ENST00000325222	human	ensembl	74_37	+1	known	missense	c.2309	p.D770G	1.000	smart_Cullin_neddylation_domain	pfam_Cullin_N,pfam_Cullin_neddylation_domain,superfamily_Cullin_repeat-like_dom,superfamily_Cullin_homology,smart_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL1	HGNC	ENSG00000055130				71	0	0	76	7	8.43373
EZH2	0	genome.wustl.edu	37	7	148525902	148525902	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	148525902	148525902	G	A	SNP	EZH2	ENST00000320356	human	ensembl	74_37	-1	known	silent	c.555	p.D185	0.201	smart_SANT/Myb	pfam_SET_dom,pfam_EZH2_WD-Binding,superfamily_Homeodomain-like,smart_SANT/Myb,smart_SET_dom,pfscan_SET_dom	-	no_errors	EZH2	HGNC	ENSG00000106462				77	0	0	61	4	6.15385
ZNF786	0	genome.wustl.edu	37	7	148769148	148769148	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	148769148	148769148	T	A	SNP	ZNF786	ENST00000491431	human	ensembl	74_37	-1	known	missense	c.716	p.H239L	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF786	HGNC	ENSG00000197362				33	0	0	24	5	17.2414
ZNF425	0	genome.wustl.edu	37	7	148800939	148800939	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	148800939	148800939	T	C	SNP	ZNF425	ENST00000378061	human	ensembl	74_37	-1	known	missense	c.2024	p.Y675C	0.918	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	ZNF425	HGNC	ENSG00000204947				136	0	0	132	15	10.2041
ZNF282	0	genome.wustl.edu	37	7	148895675	148895675	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	148895675	148895675	C	T	SNP	ZNF282	ENST00000262085	human	ensembl	74_37	+1	known	missense	c.416	p.T139M	1.000	pfam_DUF3669_Znf	pfam_Znf_C2H2,pfam_Krueppel-associated_box,pfam_DUF3669_Znf,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF282	HGNC	ENSG00000170265				82	0	0	66	18	21.4286
ZNF783	0	genome.wustl.edu	37	7	148978623	148978623	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	148978623	148978623	C	T	SNP	ZNF783	ENST00000434415	human	ensembl	74_37	+1	known	missense	c.830	p.A277V	0.087	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,pfam_DUF3669_Znf,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	ZNF783	HGNC	ENSG00000204946				67	0	0	80	9	10.1124
ZNF777	0	genome.wustl.edu	37	7	149129101	149129101	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	149129101	149129101	C	T	SNP	ZNF777	ENST00000247930	human	ensembl	74_37	-1	known	silent	c.2262	p.E754	0.995	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,pfam_DUF3669_Znf,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF777	HGNC	ENSG00000196453				72	0	0	82	8	8.88889
ZNF777	0	genome.wustl.edu	37	7	149129387	149129387	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	149129387	149129387	G	A	SNP	ZNF777	ENST00000247930	human	ensembl	74_37	-1	known	missense	c.1976	p.T659M	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,pfam_DUF3669_Znf,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF777	HGNC	ENSG00000196453				170	0	0	165	35	17.5
ZNF777	0	genome.wustl.edu	37	7	149152807	149152807	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	149152807	149152807	T	C	SNP	ZNF777	ENST00000247930	human	ensembl	74_37	-1	known	missense	c.307	p.T103A	0.974	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,pfam_DUF3669_Znf,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF777	HGNC	ENSG00000196453				146	0	0	140	30	17.6471
ZNF467	0	genome.wustl.edu	37	7	149467579	149467579	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	149467579	149467579	T	C	SNP	ZNF467	ENST00000302017	human	ensembl	74_37	-1	known	missense	c.101	p.Q34R	0.973	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF467	HGNC	ENSG00000181444				75	0	0	76	5	6.17284
ZNF467	0	genome.wustl.edu	37	7	149468102	149468102	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	149468102	149468102	G	A	SNP	ZNF467	ENST00000302017	human	ensembl	74_37	-1	known	missense	c.20	p.A7V	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF467	HGNC	ENSG00000181444				81	0	0	59	4	6.34921
SSPO	0	genome.wustl.edu	37	7	149516491	149516491	+	RNA	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	149516491	149516491	G	A	SNP	SSPO	ENST00000378016	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SSPO	HGNC	ENSG00000197558				22	0	0	26	3	10.3448
SSPO	0	genome.wustl.edu	37	7	149529972	149529972	+	RNA	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	149529972	149529972	C	T	SNP	SSPO	ENST00000378016	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.999	-	-	-	no_errors	SSPO	HGNC	ENSG00000197558				17	0	0	19	4	17.3913
ZNF862	0	genome.wustl.edu	37	7	149557749	149557749	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	149557749	149557749	A	G	SNP	ZNF862	ENST00000223210	human	ensembl	74_37	+1	known	silent	c.1500	p.S500	0.936	smart_Znf_TTF	pfam_Krueppel-associated_box,pfam_HATC_dom_C,superfamily_Krueppel-associated_box,superfamily_RNaseH-like_dom,smart_Krueppel-associated_box,smart_Znf_TTF,pfscan_Krueppel-associated_box	-	no_errors	ZNF862	HGNC	ENSG00000106479				136	0	0	108	8	6.89655
ATP6V0E2	0	genome.wustl.edu	37	7	149575841	149575841	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	149575841	149575841	T	C	SNP	ATP6V0E2	ENST00000456496	human	ensembl	74_37	+1	known	missense	c.374	p.V125A	1.000	NULL	pfam_ATPase_V0-cplx_e1/e2_su	-	no_errors	ATP6V0E2	HGNC	ENSG00000171130				47	0	0	51	7	12.069
LRRC61	0	genome.wustl.edu	37	7	150034226	150034226	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	150034226	150034226	A	G	SNP	LRRC61	ENST00000323078	human	ensembl	74_37	+1	known	silent	c.276	p.P92	0.332	NULL	pfam_Leu-rich_rpt	-	no_errors	LRRC61	HGNC	ENSG00000127399				43	0	0	47	5	9.61538
GIMAP8	0	genome.wustl.edu	37	7	150174507	150174507	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	150174507	150174507	C	T	SNP	GIMAP8	ENST00000307271	human	ensembl	74_37	+1	known	missense	c.1637	p.A546V	0.000	pfam_AIG1,superfamily_P-loop_NTPase	pfam_AIG1,superfamily_P-loop_NTPase	-	no_errors	GIMAP8	HGNC	ENSG00000171115				98	0	0	81	13	13.8298
AOC1	0	genome.wustl.edu	37	7	150553893	150553893	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	150553893	150553893	C	T	SNP	AOC1	ENST00000416793	human	ensembl	74_37	+1	known	missense	c.335	p.T112I	1.000	pfam_Cu_amine_oxidase_N2,superfamily_Cu_amine_oxidase_N-reg,prints_Cu_amine_oxidase	pfam_Cu_amine_oxidase_C,pfam_Cu_amine_oxidase_N2,pfam_Cu_amine_oxidase_N3,superfamily_Cu_amine_oxidase_C,superfamily_Cu_amine_oxidase_N-reg,prints_Cu_amine_oxidase	-	no_errors	AOC1	HGNC	ENSG00000002726				74	0	0	94	6	6
AOC1	0	genome.wustl.edu	37	7	150553979	150553979	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	150553979	150553979	A	G	SNP	AOC1	ENST00000416793	human	ensembl	74_37	+1	known	missense	c.421	p.R141G	0.041	pfam_Cu_amine_oxidase_N3,superfamily_Cu_amine_oxidase_N-reg	pfam_Cu_amine_oxidase_C,pfam_Cu_amine_oxidase_N2,pfam_Cu_amine_oxidase_N3,superfamily_Cu_amine_oxidase_C,superfamily_Cu_amine_oxidase_N-reg,prints_Cu_amine_oxidase	-	no_errors	AOC1	HGNC	ENSG00000002726				60	0	0	70	9	11.3924
AOC1	0	genome.wustl.edu	37	7	150554819	150554819	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	150554819	150554819	A	G	SNP	AOC1	ENST00000416793	human	ensembl	74_37	+1	known	missense	c.1261	p.M421V	1.000	pfam_Cu_amine_oxidase_C,superfamily_Cu_amine_oxidase_C,prints_Cu_amine_oxidase	pfam_Cu_amine_oxidase_C,pfam_Cu_amine_oxidase_N2,pfam_Cu_amine_oxidase_N3,superfamily_Cu_amine_oxidase_C,superfamily_Cu_amine_oxidase_N-reg,prints_Cu_amine_oxidase	-	no_errors	AOC1	HGNC	ENSG00000002726				62	0	0	49	4	7.54717
AOC1	0	genome.wustl.edu	37	7	150555934	150555934	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	150555934	150555934	C	T	SNP	AOC1	ENST00000416793	human	ensembl	74_37	+1	known	missense	c.1654	p.P552S	1.000	pfam_Cu_amine_oxidase_C,superfamily_Cu_amine_oxidase_C	pfam_Cu_amine_oxidase_C,pfam_Cu_amine_oxidase_N2,pfam_Cu_amine_oxidase_N3,superfamily_Cu_amine_oxidase_C,superfamily_Cu_amine_oxidase_N-reg,prints_Cu_amine_oxidase	-	no_errors	AOC1	HGNC	ENSG00000002726				41	0	0	40	4	9.09091
ATG9B	0	genome.wustl.edu	37	7	150715789	150715789	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	150715789	150715789	T	C	SNP	ATG9B	ENST00000377974	human	ensembl	74_37	-1	known	missense	c.1636	p.T546A	1.000	pfam_Autophagy-rel_prot_9	pfam_Autophagy-rel_prot_9	-	no_errors	ATG9B	HGNC	ENSG00000181652				37	0	0	30	4	11.7647
CHPF2	0	genome.wustl.edu	37	7	150932145	150932145	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	150932145	150932145	T	A	SNP	CHPF2	ENST00000035307	human	ensembl	74_37	+1	known	missense	c.275	p.I92N	1.000	NULL	pfam_Chond_GalNAc,pfam_Fringe-like	-	no_errors	CHPF2	HGNC	ENSG00000033100				72	0	0	58	4	6.45161
NUB1	0	genome.wustl.edu	37	7	151049913	151049913	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	151049913	151049913	T	C	SNP	NUB1	ENST00000568733	human	ensembl	74_37	+1	known	silent	c.432	p.F144	1.000	NULL	pfam_UBA/Ts_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	NUB1	HGNC	ENSG00000013374				89	0	0	62	9	12.6761
NUB1	0	genome.wustl.edu	37	7	151053219	151053219	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	151053219	151053219	G	T	SNP	NUB1	ENST00000568733	human	ensembl	74_37	+1	known	nonsense	c.676	p.E226*	1.000	NULL	pfam_UBA/Ts_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	NUB1	HGNC	ENSG00000013374				49	0	0	29	4	12.1212
INTS1	0	genome.wustl.edu	37	7	1513960	1513960	+	Silent	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	1513960	1513960	G	T	SNP	INTS1	ENST00000389470	human	ensembl	74_37	-1	known	silent	c.6285	p.R2095	0.034	NULL	pfam_DUF3677,superfamily_ARM-type_fold	-	no_errors	INTS1	HGNC	ENSG00000164880				52	0	0	56	7	11.1111
GALNTL5	0	genome.wustl.edu	37	7	151716738	151716738	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	151716738	151716738	T	C	SNP	GALNTL5	ENST00000392800	human	ensembl	74_37	+1	known	missense	c.1184	p.F395S	0.952	NULL	pfam_Glyco_trans_2	-	no_errors	GALNTL5	HGNC	ENSG00000106648				111	0	0	79	6	7.05882
KMT2C	0	genome.wustl.edu	37	7	151845492	151845492	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	151845492	151845492	T	C	SNP	KMT2C	ENST00000355193	human	ensembl	74_37	-1	known	missense	c.13691	p.K4564R	1.000	superfamily_Znf_FYVE_PHD,smart_Znf_PHD	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2C	HGNC	ENSG00000055609				153	0	0	130	13	9.09091
KMT2C	0	genome.wustl.edu	37	7	151859810	151859810	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	151859810	151859810	A	T	SNP	KMT2C	ENST00000355193	human	ensembl	74_37	-1	known	missense	c.10852	p.S3618T	1.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2C	HGNC	ENSG00000055609				86	0	0	79	8	9.1954
KMT2C	0	genome.wustl.edu	37	7	151864460	151864460	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	151864460	151864460	T	A	SNP	KMT2C	ENST00000355193	human	ensembl	74_37	-1	known	missense	c.9521	p.D3174V	1.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2C	HGNC	ENSG00000055609				105	0	0	72	7	8.86076
KMT2C	0	genome.wustl.edu	37	7	151873608	151873608	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	151873608	151873608	G	T	SNP	KMT2C	ENST00000355193	human	ensembl	74_37	-1	known	missense	c.8930	p.S2977Y	0.519	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2C	HGNC	ENSG00000055609				64	0	0	47	5	9.61538
KMT2C	0	genome.wustl.edu	37	7	151917681	151917681	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	151917681	151917681	G	A	SNP	KMT2C	ENST00000355193	human	ensembl	74_37	-1	known	silent	c.3639	p.S1213	0.994	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2C	HGNC	ENSG00000055609				69	0	0	45	12	21.0526
KMT2C	0	genome.wustl.edu	37	7	151960175	151960175	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	151960175	151960175	A	G	SNP	KMT2C	ENST00000355193	human	ensembl	74_37	-1	known	missense	c.1225	p.C409R	1.000	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Znf_RING,pfscan_Znf_PHD-finger	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2C	HGNC	ENSG00000055609				125	0	0	78	11	12.3596
XRCC2	0	genome.wustl.edu	37	7	152346370	152346370	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	152346370	152346370	A	G	SNP	XRCC2	ENST00000359321	human	ensembl	74_37	-1	known	missense	c.200	p.L67P	1.000	pfam_DNA_recomb/repair_Rad51_C,superfamily_P-loop_NTPase,pfscan_DNA_recomb_RecA/RadB_ATP-bd	pfam_DNA_recomb/repair_Rad51_C,superfamily_P-loop_NTPase,pfscan_DNA_recomb_RecA/RadB_ATP-bd	-	no_errors	XRCC2	HGNC	ENSG00000196584				82	0	0	69	5	6.75676
INTS1	0	genome.wustl.edu	37	7	1526379	1526379	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	1526379	1526379	C	T	SNP	INTS1	ENST00000389470	human	ensembl	74_37	-1	known	missense	c.3287	p.R1096H	1.000	NULL	pfam_DUF3677,superfamily_ARM-type_fold	-	no_errors	INTS1	HGNC	ENSG00000164880				38	0	0	21	4	16
INTS1	0	genome.wustl.edu	37	7	1538925	1538925	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	1538925	1538925	G	A	SNP	INTS1	ENST00000389470	human	ensembl	74_37	-1	known	silent	c.1300	p.L434	1.000	NULL	pfam_DUF3677,superfamily_ARM-type_fold	-	no_errors	INTS1	HGNC	ENSG00000164880				107	0	0	98	7	6.66667
DPP6	0	genome.wustl.edu	37	7	154645512	154645512	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	154645512	154645512	G	A	SNP	DPP6	ENST00000377770	human	ensembl	74_37	+1	known	silent	c.1689	p.T563	0.119	NULL	pfam_Peptidase_S9B,pfam_Peptidase_S9,pfam_PD40	-	no_errors	DPP6	HGNC	ENSG00000130226				140	0	0	111	12	9.7561
PAXIP1	0	genome.wustl.edu	37	7	154752746	154752746	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	154752746	154752746	A	T	SNP	PAXIP1	ENST00000397192	human	ensembl	74_37	-1	known	missense	c.2291	p.I764K	1.000	pfam_BRCT_dom,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	pfam_BRCT_dom,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	PAXIP1	HGNC	ENSG00000157212				22	0	0	9	2	18.1818
HTR5A	0	genome.wustl.edu	37	7	154863077	154863077	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	154863077	154863077	C	T	SNP	HTR5A	ENST00000287907	human	ensembl	74_37	+1	known	silent	c.468	p.C156	0.825	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_5HT5A_rcpt,prints_5HT_rcpt	-	no_errors	HTR5A	HGNC	ENSG00000157219				45	0	0	39	11	22
INSIG1	0	genome.wustl.edu	37	7	155094494	155094494	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	155094494	155094494	C	A	SNP	INSIG1	ENST00000340368	human	ensembl	74_37	+1	known	missense	c.742	p.L248I	1.000	pfam_INSIG_fam	pfam_INSIG_fam	-	no_errors	INSIG1	HGNC	ENSG00000186480				178	0	0	143	11	7.14286
NOM1	0	genome.wustl.edu	37	7	156758976	156758976	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	156758976	156758976	G	T	SNP	NOM1	ENST00000275820	human	ensembl	74_37	+1	known	missense	c.2046	p.K682N	1.000	pfam_Initiation_fac_eIF4g_MI,superfamily_ARM-type_fold,smart_Initiation_fac_eIF4g_MI	pfam_Initiation_fac_eIF4g_MI,pfam_MIF4G-like_typ-3,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3,smart_Initiation_fac_eIF4g_MI	-	no_errors	NOM1	HGNC	ENSG00000146909				158	0	0	126	7	5.26316
UBE3C	0	genome.wustl.edu	37	7	157009567	157009567	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	157009567	157009567	A	T	SNP	UBE3C	ENST00000348165	human	ensembl	74_37	+1	known	missense	c.1816	p.T606S	1.000	NULL	pfam_HECT,superfamily_HECT,superfamily_DHFR-like_dom,smart_IQ_motif_EF-hand-BS,smart_HECT,pfscan_HECT,pfscan_IQ_motif_EF-hand-BS	-	no_errors	UBE3C	HGNC	ENSG00000009335				57	0	0	43	3	6.52174
PTPRN2	0	genome.wustl.edu	37	7	157985112	157985112	+	Silent	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	157985112	157985112	T	A	SNP	PTPRN2	ENST00000404321	human	ensembl	74_37	-1	known	silent	c.525	p.R175	0.325	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Receptor_IA-2,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRN2	HGNC	ENSG00000155093				80	0	0	88	10	10.2041
NCAPG2	0	genome.wustl.edu	37	7	158447815	158447815	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	158447815	158447815	T	C	SNP	NCAPG2	ENST00000409339	human	ensembl	74_37	-1	known	missense	c.2641	p.I881V	0.205	NULL	pfam_Condensin2_G2,superfamily_ARM-type_fold	-	no_errors	NCAPG2	HGNC	ENSG00000146918				105	0	0	74	6	7.5
VIPR2	0	genome.wustl.edu	37	7	158829484	158829484	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	158829484	158829484	G	A	SNP	VIPR2	ENST00000262178	human	ensembl	74_37	-1	known	missense	c.707	p.P236L	0.018	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like,prints_GPCR_2_VIP_rcpt_2	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_VIP_rcpt_2,prints_GPCR_2_secretin-like,prints_GPCR_2_VIP_rcpt	-	no_errors	VIPR2	HGNC	ENSG00000106018				37	0	0	28	3	9.67742
SOSTDC1	0	genome.wustl.edu	37	7	16505200	16505200	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	16505200	16505200	G	T	SNP	SOSTDC1	ENST00000307068	human	ensembl	74_37	-1	known	missense	c.94	p.L32I	1.000	pfam_Sclerostin/SOSTDC1	pfam_Sclerostin/SOSTDC1,pfam_Cys_knot,pfam_DAN,pfscan_Cys_knot_C	-	no_errors	SOSTDC1	HGNC	ENSG00000171243				111	0	0	86	10	10.4167
MACC1	0	genome.wustl.edu	37	7	20180770	20180770	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	20180770	20180770	T	A	SNP	MACC1	ENST00000332878	human	ensembl	74_37	-1	known	missense	c.2358	p.K786N	0.989	NULL	pfam_SH3_2,superfamily_DEATH-like_dom	-	no_errors	MACC1	HGNC	ENSG00000183742				82	0	0	73	5	6.41026
MACC1	0	genome.wustl.edu	37	7	20199707	20199707	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	20199707	20199707	T	A	SNP	MACC1	ENST00000332878	human	ensembl	74_37	-1	known	missense	c.277	p.I93F	0.001	NULL	pfam_SH3_2,superfamily_DEATH-like_dom	-	no_errors	MACC1	HGNC	ENSG00000183742				67	0	0	52	4	7.14286
ITGB8	0	genome.wustl.edu	37	7	20449319	20449319	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	20449319	20449319	T	C	SNP	ITGB8	ENST00000222573	human	ensembl	74_37	+1	known	missense	c.2105	p.L702P	1.000	pirsf_Integrin_bsu	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_EGF_extracell,superfamily_Plexin-like_fold,smart_Plexin-like_fold,smart_Integrin_bsu_N,prints_Integrin_bsu	-	no_errors	ITGB8	HGNC	ENSG00000105855				224	0	0	104	33	24.0876
ABCB5	0	genome.wustl.edu	37	7	20666232	20666232	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	20666232	20666232	A	T	SNP	ABCB5	ENST00000404938	human	ensembl	74_37	+1	putative	missense	c.106	p.I36L	1.000	superfamily_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,pfam_ABC_ATPase_put,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCB5	HGNC	ENSG00000004846				26	0	0	22	3	12
ABCB5	0	genome.wustl.edu	37	7	20778637	20778637	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	20778637	20778637	G	A	SNP	ABCB5	ENST00000258738	human	ensembl	74_37	+1	known	missense	c.1564	p.A522T	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,pfam_ABC_ATPase_put,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCB5	HGNC	ENSG00000004846				38	0	0	24	3	11.1111
DNAH11	0	genome.wustl.edu	37	7	21603998	21603998	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	21603998	21603998	A	T	SNP	DNAH11	ENST00000328843	human	ensembl	74_37	+1	known	missense	c.1177	p.N393Y	1.000	pfam_Dynein_heavy_dom-1	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH11	HGNC	ENSG00000105877				55	0	0	47	4	7.84314
DNAH11	0	genome.wustl.edu	37	7	21609853	21609853	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	21609853	21609853	A	T	SNP	DNAH11	ENST00000328843	human	ensembl	74_37	+1	known	missense	c.1361	p.D454V	1.000	pfam_Dynein_heavy_dom-1	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH11	HGNC	ENSG00000105877				161	0	0	111	6	5.12821
DNAH11	0	genome.wustl.edu	37	7	21906122	21906122	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	21906122	21906122	A	T	SNP	DNAH11	ENST00000328843	human	ensembl	74_37	+1	known	missense	c.11552	p.D3851V	1.000	pfam_Dynein_heavy_dom	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH11	HGNC	ENSG00000105877				128	0	0	103	11	9.64912
DNAH11	0	genome.wustl.edu	37	7	21923982	21923982	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	21923982	21923982	G	A	SNP	DNAH11	ENST00000328843	human	ensembl	74_37	+1	known	missense	c.12482	p.R4161H	1.000	pfam_Dynein_heavy_dom	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH11	HGNC	ENSG00000105877				97	0	0	72	25	25.7732
STEAP1B	0	genome.wustl.edu	37	7	22533402	22533402	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	22533402	22533402	C	A	SNP	STEAP1B	ENST00000404369	human	ensembl	74_37	-1	putative	missense	c.138	p.L46F	0.638	NULL	pfam_Fe3_Rdtase_TM_dom	-	no_errors	STEAP1B	HGNC	ENSG00000105889				92	0	0	54	6	10
MAD1L1	0	genome.wustl.edu	37	7	2262372	2262372	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	2262372	2262372	G	A	SNP	MAD1L1	ENST00000265854	human	ensembl	74_37	-1	known	silent	c.309	p.N103	1.000	pfam_Mad1	pfam_Mad1	-	no_errors	MAD1L1	HGNC	ENSG00000002822				39	0	0	42	8	16
SNX8	0	genome.wustl.edu	37	7	2311504	2311504	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	2311504	2311504	A	G	SNP	SNX8	ENST00000222990	human	ensembl	74_37	-1	known	missense	c.521	p.F174S	1.000	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	SNX8	HGNC	ENSG00000106266				22	0	0	23	3	11.5385
KLHL7	0	genome.wustl.edu	37	7	23164720	23164720	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	23164720	23164720	A	G	SNP	KLHL7	ENST00000339077	human	ensembl	74_37	+1	known	missense	c.371	p.Y124C	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL7	HGNC	ENSG00000122550				93	0	0	61	9	12.8571
FAM221A	0	genome.wustl.edu	37	7	23724154	23724154	+	Silent	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	23724154	23724154	T	A	SNP	FAM221A	ENST00000344962	human	ensembl	74_37	+1	known	silent	c.102	p.T34	0.996	NULL	NULL	-	no_errors	FAM221A	HGNC	ENSG00000188732				61	0	0	43	7	14
STK31	0	genome.wustl.edu	37	7	23751728	23751728	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	23751728	23751728	A	T	SNP	STK31	ENST00000355870	human	ensembl	74_37	+1	known	missense	c.61	p.I21F	0.727	NULL	pfam_Tudor,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Tudor,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Tudor,pfscan_Prot_kinase_dom	-	no_errors	STK31	HGNC	ENSG00000196335				60	0	0	25	4	13.7931
STK31	0	genome.wustl.edu	37	7	23809300	23809300	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	23809300	23809300	C	T	SNP	STK31	ENST00000355870	human	ensembl	74_37	+1	known	silent	c.1638	p.D546	0.182	NULL	pfam_Tudor,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Tudor,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Tudor,pfscan_Prot_kinase_dom	-	no_errors	STK31	HGNC	ENSG00000196335				176	0	0	104	13	11.1111
SKAP2	0	genome.wustl.edu	37	7	26724393	26724393	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	26724393	26724393	A	C	SNP	SKAP2	ENST00000345317	human	ensembl	74_37	-1	known	missense	c.949	p.S317A	1.000	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain	pfam_Pleckstrin_homology,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_SH3_domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	SKAP2	HGNC	ENSG00000005020				47	0	0	41	6	12.766
TTYH3	0	genome.wustl.edu	37	7	2687537	2687537	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	2687537	2687537	C	A	SNP	TTYH3	ENST00000403167	human	ensembl	74_37	+1	known	missense	c.58	p.P20T	0.013	NULL	pfam_Tweety	-	no_errors	TTYH3	HGNC	ENSG00000136295				19	0	0	24	6	20
HOXA2	0	genome.wustl.edu	37	7	27141056	27141056	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	27141056	27141056	G	A	SNP	HOXA2	ENST00000222718	human	ensembl	74_37	-1	known	silent	c.420	p.G140	0.965	superfamily_Homeodomain-like	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	HOXA2	HGNC	ENSG00000105996				49	0	0	39	4	9.30233
HOXA3	0	genome.wustl.edu	37	7	27147767	27147767	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	27147767	27147767	C	T	SNP	HOXA3	ENST00000317201	human	ensembl	74_37	-1	known	missense	c.1099	p.V367M	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	HOXA3	HGNC	ENSG00000105997				12	0	0	25	3	10.7143
HOXA3	0	genome.wustl.edu	37	7	27149900	27149900	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	27149900	27149900	C	T	SNP	HOXA3	ENST00000317201	human	ensembl	74_37	-1	known	silent	c.360	p.P120	0.968	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	HOXA3	HGNC	ENSG00000105997				30	0	0	24	4	14.2857
HOXA3	0	genome.wustl.edu	37	7	27150214	27150214	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	27150214	27150214	A	G	SNP	HOXA3	ENST00000317201	human	ensembl	74_37	-1	known	missense	c.46	p.Y16H	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	HOXA3	HGNC	ENSG00000105997				80	0	0	80	5	5.88235
HOXA5	0	genome.wustl.edu	37	7	27182839	27182839	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	27182839	27182839	C	T	SNP	HOXA5	ENST00000222726	human	ensembl	74_37	-1	known	missense	c.388	p.A130T	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa,prints_Homeobox_antennapedia	-	no_errors	HOXA5	HGNC	ENSG00000106004				47	0	0	30	6	16.6667
GNA12	0	genome.wustl.edu	37	7	2770886	2770886	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	2770886	2770886	C	T	SNP	GNA12	ENST00000275364	human	ensembl	74_37	-1	known	missense	c.1075	p.V359I	1.000	pfam_Gprotein_alpha_su,superfamily_P-loop_NTPase,smart_Gprotein_alpha_su	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su,prints_Gprotein_alpha_12	-	no_errors	GNA12	HGNC	ENSG00000146535				112	0	0	83	18	17.8218
CPVL	0	genome.wustl.edu	37	7	29111986	29111986	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	29111986	29111986	G	A	SNP	CPVL	ENST00000265394	human	ensembl	74_37	-1	known	silent	c.663	p.N221	1.000	pfam_Peptidase_S10	pfam_Peptidase_S10,prints_Peptidase_S10	-	no_errors	CPVL	HGNC	ENSG00000106066				87	0	0	55	7	11.2903
CPVL	0	genome.wustl.edu	37	7	29160521	29160521	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	29160521	29160521	T	C	SNP	CPVL	ENST00000265394	human	ensembl	74_37	-1	known	missense	c.157	p.K53E	0.719	NULL	pfam_Peptidase_S10,prints_Peptidase_S10	-	no_errors	CPVL	HGNC	ENSG00000106066				92	0	0	67	4	5.6338
CARD11	0	genome.wustl.edu	37	7	2951840	2951840	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	2951840	2951840	A	T	SNP	CARD11	ENST00000396946	human	ensembl	74_37	-1	known	missense	c.3110	p.I1037N	0.999	superfamily_P-loop_NTPase	pfam_CARD,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,superfamily_PDZ,pfscan_CARD	-	no_errors	CARD11	HGNC	ENSG00000198286				57	0	0	44	7	13.7255
PLEKHA8	0	genome.wustl.edu	37	7	30094922	30094922	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	30094922	30094922	T	A	SNP	PLEKHA8	ENST00000449726	human	ensembl	74_37	+1	known	missense	c.1003	p.F335I	1.000	pfam_Glycolipid_transfer_prot_dom,superfamily_Glycolipid_transfer_prot_dom	pfam_Glycolipid_transfer_prot_dom,pfam_Pleckstrin_homology,superfamily_Glycolipid_transfer_prot_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHA8	HGNC	ENSG00000106086				143	0	0	110	9	7.56303
NOD1	0	genome.wustl.edu	37	7	30490868	30490868	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	30490868	30490868	T	C	SNP	NOD1	ENST00000222823	human	ensembl	74_37	-1	known	missense	c.2165	p.E722G	1.000	NULL	pfam_CARD,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_CARD	-	no_errors	NOD1	HGNC	ENSG00000106100				61	0	0	54	4	6.89655
NOD1	0	genome.wustl.edu	37	7	30491688	30491688	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	30491688	30491688	G	A	SNP	NOD1	ENST00000222823	human	ensembl	74_37	-1	known	missense	c.1345	p.P449S	0.060	pfscan_NACHT_NTPase	pfam_CARD,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_CARD	-	no_errors	NOD1	HGNC	ENSG00000106100				49	0	0	55	5	8.33333
CRHR2	0	genome.wustl.edu	37	7	30693176	30693176	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	30693176	30693176	T	C	SNP	CRHR2	ENST00000348438	human	ensembl	74_37	-1	known	missense	c.1217	p.D406G	1.000	prints_GPCR_2_diuretic_rcpt	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,prints_GPCR_2_CRF_rcpt,prints_GPCR_2_secretin-like,prints_GPCR_2_CRF2_rcpt,prints_GPCR_2_diuretic_rcpt,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like	-	no_errors	CRHR2	HGNC	ENSG00000106113				102	0	0	91	7	7.14286
GHRHR	0	genome.wustl.edu	37	7	31014631	31014631	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	31014631	31014631	A	G	SNP	GHRHR	ENST00000409316	human	ensembl	74_37	+1	putative	missense	c.157	p.R53G	0.991	NULL	NULL	-	no_errors	GHRHR	HGNC	ENSG00000106128				62	0	0	60	6	9.09091
ADCYAP1R1	0	genome.wustl.edu	37	7	31102904	31102904	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	31102904	31102904	C	T	SNP	ADCYAP1R1	ENST00000304166	human	ensembl	74_37	+1	known	silent	c.24	p.S8	0.570	NULL	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_PACAP_1_rcpt,prints_GPCR_2_secretin-like	-	no_errors	ADCYAP1R1	HGNC	ENSG00000078549				69	0	0	62	6	8.82353
CCDC129	0	genome.wustl.edu	37	7	31683452	31683452	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	31683452	31683452	G	A	SNP	CCDC129	ENST00000451887	human	ensembl	74_37	+1	known	missense	c.2546	p.G849D	0.000	NULL	NULL	-	no_errors	CCDC129	HGNC	ENSG00000180347				80	0	0	68	12	15
KBTBD2	0	genome.wustl.edu	37	7	32909594	32909594	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	32909594	32909594	A	G	SNP	KBTBD2	ENST00000304056	human	ensembl	74_37	-1	known	missense	c.1235	p.V412A	1.000	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_BTB_POZ,pfam_BACK,pfam_Kelch_1,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KBTBD2	HGNC	ENSG00000170852				151	0	0	141	10	6.62252
FKBP9	0	genome.wustl.edu	37	7	33042307	33042307	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	33042307	33042307	T	C	SNP	FKBP9	ENST00000538336	human	ensembl	74_37	+1	known	silent	c.1551	p.S517	0.998	pfam_PPIase_FKBP_dom,pfscan_PPIase_FKBP_dom	pfam_PPIase_FKBP_dom,smart_EF_hand_dom,pfscan_EF_hand_dom,pfscan_PPIase_FKBP_dom	-	no_errors	FKBP9	HGNC	ENSG00000122642				27	0	0	32	3	8.57143
BBS9	0	genome.wustl.edu	37	7	33303972	33303972	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	33303972	33303972	G	T	SNP	BBS9	ENST00000242067	human	ensembl	74_37	+1	known	nonsense	c.688	p.G230*	1.000	NULL	NULL	-	no_errors	BBS9	HGNC	ENSG00000122507				116	0	0	59	5	7.8125
BBS9	0	genome.wustl.edu	37	7	33573721	33573721	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	33573721	33573721	A	T	SNP	BBS9	ENST00000242067	human	ensembl	74_37	+1	known	missense	c.2454	p.R818S	0.001	NULL	NULL	-	no_errors	BBS9	HGNC	ENSG00000122507				78	0	0	55	5	8.33333
DPY19L2P1	0	genome.wustl.edu	37	7	35131548	35131548	+	RNA	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	35131548	35131548	G	A	SNP	DPY19L2P1	ENST00000436258	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.985	-	-	-	no_errors	DPY19L2P1	HGNC	ENSG00000189212				113	1	0.877193	96	12	11.1111
EEPD1	0	genome.wustl.edu	37	7	36194118	36194118	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	36194118	36194118	G	A	SNP	EEPD1	ENST00000242108	human	ensembl	74_37	+1	known	missense	c.185	p.R62H	1.000	pfam_HhH_motif,superfamily_RuvA_2-like,smart_Hlx-hairpin-Hlx_DNA-bd_motif,tigrfam_Competence_ComEA_HhH	pfam_HhH_motif,pfam_Endo/exonuclease/phosphatase,pfam_GspK,superfamily_Endo/exonuclease/phosphatase,superfamily_RuvA_2-like,smart_Hlx-hairpin-Hlx_DNA-bd_motif,tigrfam_Competence_ComEA_HhH	-	no_errors	EEPD1	HGNC	ENSG00000122547				137	0	0	91	23	20.1754
ELMO1	0	genome.wustl.edu	37	7	36934620	36934620	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	36934620	36934620	T	C	SNP	ELMO1	ENST00000310758	human	ensembl	74_37	-1	known	silent	c.1440	p.V480	1.000	pfam_Engulfment_cell_motility_ELMO	pfam_DUF3361,pfam_Engulfment_cell_motility_ELMO,superfamily_ARM-type_fold	-	no_errors	ELMO1	HGNC	ENSG00000155849				84	0	0	81	7	7.95455
ELMO1	0	genome.wustl.edu	37	7	37172811	37172811	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	37172811	37172811	G	A	SNP	ELMO1	ENST00000310758	human	ensembl	74_37	-1	known	missense	c.1115	p.T372M	1.000	pfam_Engulfment_cell_motility_ELMO	pfam_DUF3361,pfam_Engulfment_cell_motility_ELMO,superfamily_ARM-type_fold	-	no_errors	ELMO1	HGNC	ENSG00000155849				154	0	0	115	9	7.25806
NME8	0	genome.wustl.edu	37	7	37907455	37907455	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	37907455	37907455	T	C	SNP	NME8	ENST00000199447	human	ensembl	74_37	+1	known	missense	c.773	p.V258A	0.000	superfamily_Nucleoside_diP_kinase	pfam_Nucleoside_diP_kinase,pfam_Thioredoxin_domain,superfamily_Nucleoside_diP_kinase,superfamily_Thioredoxin-like_fold,smart_Nucleoside_diP_kinase	-	no_errors	NME8	HGNC	ENSG00000086288				45	0	0	42	3	6.66667
EPDR1	0	genome.wustl.edu	37	7	37960798	37960798	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	37960798	37960798	T	A	SNP	EPDR1	ENST00000559325	human	ensembl	74_37	+1	known	missense	c.617	p.I206N	1.000	pfam_Ependymin,smart_Ependymin	pfam_Ependymin,smart_Ependymin,prints_Ependymin	-	no_errors	EPDR1	HGNC	ENSG00000086289				35	0	0	32	3	8.57143
STARD3NL	0	genome.wustl.edu	37	7	38247245	38247245	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	38247245	38247245	G	A	SNP	STARD3NL	ENST00000009041	human	ensembl	74_37	+1	known	missense	c.140	p.G47D	1.000	NULL	pfam_MENTAL	-	no_errors	STARD3NL	HGNC	ENSG00000010270				125	0	0	103	10	8.84956
CDK13	0	genome.wustl.edu	37	7	40134332	40134332	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	40134332	40134332	A	T	SNP	CDK13	ENST00000181839	human	ensembl	74_37	+1	known	missense	c.4292	p.H1431L	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDK13	HGNC	ENSG00000065883				94	0	0	77	5	6.09756
CDK13	0	genome.wustl.edu	37	7	40134336	40134336	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	40134336	40134336	T	C	SNP	CDK13	ENST00000181839	human	ensembl	74_37	+1	known	silent	c.4296	p.G1432	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDK13	HGNC	ENSG00000065883				89	0	0	71	8	10.1266
CDK13	0	genome.wustl.edu	37	7	40134465	40134465	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	40134465	40134465	C	T	SNP	CDK13	ENST00000181839	human	ensembl	74_37	+1	known	silent	c.4425	p.L1475	0.986	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDK13	HGNC	ENSG00000065883				66	0	0	79	11	12.2222
MPLKIP	0	genome.wustl.edu	37	7	40174145	40174145	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	40174145	40174145	G	A	SNP	MPLKIP	ENST00000306984	human	ensembl	74_37	-1	known	missense	c.22	p.P8S	1.000	NULL	NULL	-	no_errors	MPLKIP	HGNC	ENSG00000168303				20	0	0	13	2	13.3333
C7orf10	0	genome.wustl.edu	37	7	40314127	40314127	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	40314127	40314127	C	T	SNP	C7orf10	ENST00000309930	human	ensembl	74_37	+1	known	missense	c.613	p.R205C	1.000	pfam_CoA-Trfase_fam_III,superfamily_CoA-Trfase_III_dom	pfam_CoA-Trfase_fam_III,superfamily_CoA-Trfase_III_dom	-	no_errors	C7orf10	HGNC	ENSG00000175600				86	0	0	61	9	12.8571
SDK1	0	genome.wustl.edu	37	7	4116654	4116654	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	4116654	4116654	A	G	SNP	SDK1	ENST00000404826	human	ensembl	74_37	+1	known	missense	c.3035	p.Y1012C	0.682	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	SDK1	HGNC	ENSG00000146555				30	0	0	38	5	11.6279
SDK1	0	genome.wustl.edu	37	7	4277380	4277380	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	4277380	4277380	C	T	SNP	SDK1	ENST00000404826	human	ensembl	74_37	+1	known	missense	c.6094	p.H2032Y	0.998	NULL	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	SDK1	HGNC	ENSG00000146555				90	0	0	77	11	12.5
STK17A	0	genome.wustl.edu	37	7	43647896	43647896	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	43647896	43647896	G	A	SNP	STK17A	ENST00000319357	human	ensembl	74_37	+1	known	missense	c.461	p.R154K	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	STK17A	HGNC	ENSG00000164543				100	1	0.990099	49	7	12.5
BLVRA	0	genome.wustl.edu	37	7	43830895	43830895	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	43830895	43830895	A	G	SNP	BLVRA	ENST00000265523	human	ensembl	74_37	+1	known	missense	c.182	p.D61G	1.000	pfam_Oxidoreductase_N,pirsf_Biliverdin_Rdtase_A	pfam_Biliverdin_Rdtase_cat,pfam_Oxidoreductase_N,pirsf_Biliverdin_Rdtase_A	-	no_errors	BLVRA	HGNC	ENSG00000106605				147	0	0	100	25	20
BLVRA	0	genome.wustl.edu	37	7	43846580	43846580	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	43846580	43846580	C	T	SNP	BLVRA	ENST00000265523	human	ensembl	74_37	+1	known	silent	c.637	p.L213	0.914	pfam_Biliverdin_Rdtase_cat,pirsf_Biliverdin_Rdtase_A	pfam_Biliverdin_Rdtase_cat,pfam_Oxidoreductase_N,pirsf_Biliverdin_Rdtase_A	-	no_errors	BLVRA	HGNC	ENSG00000106605				78	0	0	60	4	6.25
URGCP	0	genome.wustl.edu	37	7	43916390	43916390	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	43916390	43916390	A	G	SNP	URGCP	ENST00000453200	human	ensembl	74_37	-1	known	missense	c.2672	p.V891A	0.980	NULL	superfamily_P-loop_NTPase,prints_GTP_binding_domain	-	no_errors	URGCP	HGNC	ENSG00000106608				108	0	0	103	11	9.64912
URGCP	0	genome.wustl.edu	37	7	43917311	43917311	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	43917311	43917311	T	C	SNP	URGCP	ENST00000453200	human	ensembl	74_37	-1	known	missense	c.1751	p.Q584R	0.001	NULL	superfamily_P-loop_NTPase,prints_GTP_binding_domain	-	no_errors	URGCP	HGNC	ENSG00000106608				47	0	0	50	5	9.09091
POLM	0	genome.wustl.edu	37	7	44116212	44116212	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	44116212	44116212	A	G	SNP	POLM	ENST00000242248	human	ensembl	74_37	-1	known	missense	c.731	p.F244S	0.974	pfam_DNA_pol_lambd_fingers_domain,superfamily_DNA_pol_lambd_fingers_domain,smart_DNA-dir_DNA_pol_X,pirsf_TdT/Mu	pfam_DNA_pol_lambd_fingers_domain,superfamily_DNA_pol_b-like_N,superfamily_DNA_pol_lambd_fingers_domain,superfamily_BRCT_dom,smart_DNA-dir_DNA_pol_X,pirsf_TdT/Mu,pfscan_BRCT_dom,prints_TdT/Mu,prints_DNA_pol_X,prints_DNA_pol_X_beta-like	-	no_errors	POLM	HGNC	ENSG00000122678				63	0	0	75	8	9.63855
MYL7	0	genome.wustl.edu	37	7	44178596	44178596	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	44178596	44178596	G	A	SNP	MYL7	ENST00000223364	human	ensembl	74_37	-1	known	missense	c.452	p.P151L	1.000	NULL	smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	MYL7	HGNC	ENSG00000106631				48	0	0	57	5	8.06452
YKT6	0	genome.wustl.edu	37	7	44246004	44246004	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	44246004	44246004	G	A	SNP	YKT6	ENST00000223369	human	ensembl	74_37	+1	known	missense	c.208	p.V70I	1.000	superfamily_Longin-like_dom,pfscan_Longin_dom	pfam_Synaptobrevin,superfamily_Longin-like_dom,pfscan_Longin_dom,pfscan_Synaptobrevin	-	no_errors	YKT6	HGNC	ENSG00000106636				66	0	0	72	5	6.49351
H2AFV	0	genome.wustl.edu	37	7	44882918	44882918	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	44882918	44882918	G	A	SNP	H2AFV	ENST00000308153	human	ensembl	74_37	-1	known	silent	c.39	p.A13	1.000	superfamily_Histone-fold,smart_Histone_H2A	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	-	no_errors	H2AFV	HGNC	ENSG00000105968				71	0	0	56	6	9.67742
TBRG4	0	genome.wustl.edu	37	7	45142067	45142067	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	45142067	45142067	C	A	SNP	TBRG4	ENST00000258770	human	ensembl	74_37	-1	known	missense	c.1200	p.E400D	0.009	pfam_FAST_Leu-rich	pfam_FAST_2,pfam_FAST_Leu-rich,pfam_RAP,smart_RAP	-	no_errors	TBRG4	HGNC	ENSG00000136270				58	0	0	38	5	11.6279
RAMP3	0	genome.wustl.edu	37	7	45216982	45216982	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	45216982	45216982	G	A	SNP	RAMP3	ENST00000242249	human	ensembl	74_37	+1	known	missense	c.133	p.A45T	0.011	pfam_RAMP	pfam_RAMP	-	no_errors	RAMP3	HGNC	ENSG00000122679				57	0	0	46	8	14.8148
ADCY1	0	genome.wustl.edu	37	7	45717627	45717627	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	45717627	45717627	A	G	SNP	ADCY1	ENST00000297323	human	ensembl	74_37	+1	known	missense	c.1765	p.T589A	1.000	NULL	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY1	HGNC	ENSG00000164742				94	0	0	68	24	26.087
ADCY1	0	genome.wustl.edu	37	7	45743052	45743052	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	45743052	45743052	C	T	SNP	ADCY1	ENST00000297323	human	ensembl	74_37	+1	known	silent	c.2532	p.H844	0.997	smart_A/G_cyclase	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY1	HGNC	ENSG00000164742				35	0	0	31	5	13.8889
ADCY1	0	genome.wustl.edu	37	7	45750165	45750165	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	45750165	45750165	G	A	SNP	ADCY1	ENST00000297323	human	ensembl	74_37	+1	known	missense	c.2971	p.A991T	0.998	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY1	HGNC	ENSG00000164742				63	0	0	65	9	12.1622
ADCY1	0	genome.wustl.edu	37	7	45750202	45750202	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	45750202	45750202	T	C	SNP	ADCY1	ENST00000297323	human	ensembl	74_37	+1	known	missense	c.3008	p.V1003A	1.000	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY1	HGNC	ENSG00000164742				55	0	0	54	11	16.9231
IGFBP3	0	genome.wustl.edu	37	7	45957003	45957003	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	45957003	45957003	C	T	SNP	IGFBP3	ENST00000381083	human	ensembl	74_37	-1	known	missense	c.457	p.G153S	0.000	NULL	pfam_Thyroglobulin_1,pfam_IGFBP-like,superfamily_Thyroglobulin_1,superfamily_Growth_fac_rcpt_N_dom,smart_IGFBP-like,smart_Thyroglobulin_1,prints_IGFBP_1-6_chordata,prints_IGFBP-3,pfscan_Thyroglobulin_1	-	no_errors	IGFBP3	HGNC	ENSG00000146674				74	0	0	47	14	22.9508
TNS3	0	genome.wustl.edu	37	7	47408173	47408173	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	47408173	47408173	C	T	SNP	TNS3	ENST00000311160	human	ensembl	74_37	-1	known	silent	c.2070	p.S690	0.229	NULL	pfam_PTB,pfam_Tensin_phosphatase_C2-dom,pfam_SH2,superfamily_C2_dom,smart_Tyr_Pase_cat,smart_SH2,smart_PTB/PI_dom,pfscan_SH2,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TNS3	HGNC	ENSG00000136205				255	1	0.390625	242	18	6.92308
TNS3	0	genome.wustl.edu	37	7	47408194	47408194	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	47408194	47408194	G	A	SNP	TNS3	ENST00000311160	human	ensembl	74_37	-1	known	silent	c.2049	p.S683	0.000	NULL	pfam_PTB,pfam_Tensin_phosphatase_C2-dom,pfam_SH2,superfamily_C2_dom,smart_Tyr_Pase_cat,smart_SH2,smart_PTB/PI_dom,pfscan_SH2,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TNS3	HGNC	ENSG00000136205				265	0	0	237	27	10.2273
TNS3	0	genome.wustl.edu	37	7	47453571	47453571	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	47453571	47453571	T	C	SNP	TNS3	ENST00000311160	human	ensembl	74_37	-1	known	missense	c.611	p.Y204C	1.000	pfam_Tensin_phosphatase_C2-dom,superfamily_C2_dom,pfscan_Tensin_phosphatase_C2-dom	pfam_PTB,pfam_Tensin_phosphatase_C2-dom,pfam_SH2,superfamily_C2_dom,smart_Tyr_Pase_cat,smart_SH2,smart_PTB/PI_dom,pfscan_SH2,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TNS3	HGNC	ENSG00000136205				111	0	0	92	10	9.80392
FOXK1	0	genome.wustl.edu	37	7	4780606	4780606	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	4780606	4780606	A	G	SNP	FOXK1	ENST00000328914	human	ensembl	74_37	+1	known	missense	c.698	p.D233G	1.000	NULL	pfam_TF_fork_head,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,smart_TF_fork_head,pfscan_FHA_dom,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXK1	HGNC	ENSG00000164916				52	0	0	68	9	11.6883
PKD1L1	0	genome.wustl.edu	37	7	47869198	47869198	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	47869198	47869198	A	G	SNP	PKD1L1	ENST00000289672	human	ensembl	74_37	-1	known	missense	c.6560	p.V2187A	0.167	NULL	pfam_PKD/REJ-like,pfam_PKD1_2_channel,pfam_PKD_dom,pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,superfamily_PKD_dom,smart_PKD/Chitinase_dom,smart_PLAT/LH2_dom,pfscan_PKD_dom,pfscan_PLAT/LH2_dom,pfscan_REJ-like	-	no_errors	PKD1L1	HGNC	ENSG00000158683				172	0	0	166	15	8.28729
PKD1L1	0	genome.wustl.edu	37	7	47894797	47894797	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	47894797	47894797	G	A	SNP	PKD1L1	ENST00000289672	human	ensembl	74_37	-1	known	silent	c.4657	p.L1553	0.467	pfscan_REJ-like	pfam_PKD/REJ-like,pfam_PKD1_2_channel,pfam_PKD_dom,pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,superfamily_PKD_dom,smart_PKD/Chitinase_dom,smart_PLAT/LH2_dom,pfscan_PKD_dom,pfscan_PLAT/LH2_dom,pfscan_REJ-like	-	no_errors	PKD1L1	HGNC	ENSG00000158683				94	0	0	86	9	9.47368
PKD1L1	0	genome.wustl.edu	37	7	47897384	47897384	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	47897384	47897384	C	T	SNP	PKD1L1	ENST00000289672	human	ensembl	74_37	-1	known	missense	c.4409	p.R1470Q	0.000	pfscan_REJ-like	pfam_PKD/REJ-like,pfam_PKD1_2_channel,pfam_PKD_dom,pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,superfamily_PKD_dom,smart_PKD/Chitinase_dom,smart_PLAT/LH2_dom,pfscan_PKD_dom,pfscan_PLAT/LH2_dom,pfscan_REJ-like	-	no_errors	PKD1L1	HGNC	ENSG00000158683				65	0	0	71	12	14.4578
PKD1L1	0	genome.wustl.edu	37	7	47906161	47906161	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	47906161	47906161	G	A	SNP	PKD1L1	ENST00000289672	human	ensembl	74_37	-1	known	silent	c.3948	p.Y1316	0.002	pfam_PKD/REJ-like,pfscan_REJ-like	pfam_PKD/REJ-like,pfam_PKD1_2_channel,pfam_PKD_dom,pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,superfamily_PKD_dom,smart_PKD/Chitinase_dom,smart_PLAT/LH2_dom,pfscan_PKD_dom,pfscan_PLAT/LH2_dom,pfscan_REJ-like	-	no_errors	PKD1L1	HGNC	ENSG00000158683				106	0	0	94	9	8.73786
AP5Z1	0	genome.wustl.edu	37	7	4825911	4825911	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	4825911	4825911	T	A	SNP	AP5Z1	ENST00000348624	human	ensembl	74_37	+1	known	missense	c.1163	p.V388D	0.035	NULL	NULL	-	no_errors	AP5Z1	HGNC	ENSG00000242802				32	0	0	55	7	11.2903
ABCA13	0	genome.wustl.edu	37	7	48315257	48315257	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	48315257	48315257	T	C	SNP	ABCA13	ENST00000435803	human	ensembl	74_37	+1	known	silent	c.5994	p.I1998	0.002	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA13	HGNC	ENSG00000179869				23	0	0	15	4	21.0526
ABCA13	0	genome.wustl.edu	37	7	48315591	48315591	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	48315591	48315591	T	C	SNP	ABCA13	ENST00000435803	human	ensembl	74_37	+1	known	missense	c.6328	p.S2110P	0.004	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA13	HGNC	ENSG00000179869				50	0	0	40	4	9.09091
ABCA13	0	genome.wustl.edu	37	7	48318231	48318231	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	48318231	48318231	T	C	SNP	ABCA13	ENST00000435803	human	ensembl	74_37	+1	known	silent	c.7440	p.G2480	0.000	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA13	HGNC	ENSG00000179869				263	0	0	228	21	8.43373
ABCA13	0	genome.wustl.edu	37	7	48318639	48318639	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	48318639	48318639	T	C	SNP	ABCA13	ENST00000435803	human	ensembl	74_37	+1	known	silent	c.7848	p.S2616	0.000	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA13	HGNC	ENSG00000179869				79	0	0	55	6	9.83607
ABCA13	0	genome.wustl.edu	37	7	48337993	48337993	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	48337993	48337993	T	C	SNP	ABCA13	ENST00000435803	human	ensembl	74_37	+1	known	missense	c.9230	p.I3077T	0.051	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA13	HGNC	ENSG00000179869				69	0	0	41	9	18
PAPOLB	0	genome.wustl.edu	37	7	4901085	4901085	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	4901085	4901085	G	A	SNP	PAPOLB	ENST00000404991	human	ensembl	74_37	-1	known	silent	c.354	p.C118	0.997	pfam_PolA_pol_cen_dom,pfam_Nucleotidyltransferase,pirsf_PolyA_polymerase	pfam_PolA_pol_cen_dom,pfam_PolA_pol_RNA-bd_dom,pfam_Nucleotidyltransferase,superfamily_NuclTrfase_I_C,pirsf_PolyA_polymerase	-	no_errors	PAPOLB	HGNC	ENSG00000218823				58	0	0	25	11	30.5556
MMD2	0	genome.wustl.edu	37	7	4965157	4965157	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	4965157	4965157	C	T	SNP	MMD2	ENST00000404774	human	ensembl	74_37	-1	known	missense	c.54	p.M18I	1.000	NULL	pfam_HlyIII-related	-	no_errors	MMD2	HGNC	ENSG00000136297				133	0	0	113	14	11.0236
VWC2	0	genome.wustl.edu	37	7	49951753	49951753	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	49951753	49951753	G	A	SNP	VWC2	ENST00000340652	human	ensembl	74_37	+1	known	missense	c.950	p.C317Y	1.000	NULL	pfam_VWF_C,smart_VWF_C,pfscan_VWF_C	-	no_errors	VWC2	HGNC	ENSG00000188730				80	0	0	64	10	13.5135
FIGNL1	0	genome.wustl.edu	37	7	50513108	50513108	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	50513108	50513108	A	G	SNP	FIGNL1	ENST00000356889	human	ensembl	74_37	-1	known	silent	c.1878	p.A626	0.000	superfamily_P-loop_NTPase	pfam_ATPase_AAA_core,pfam_Vps4_C,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	FIGNL1	HGNC	ENSG00000132436				65	0	0	69	4	5.47945
FIGNL1	0	genome.wustl.edu	37	7	50513894	50513894	+	Silent	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	50513894	50513894	T	A	SNP	FIGNL1	ENST00000356889	human	ensembl	74_37	-1	known	silent	c.1092	p.G364	0.000	NULL	pfam_ATPase_AAA_core,pfam_Vps4_C,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	FIGNL1	HGNC	ENSG00000132436				151	0	0	142	15	9.55414
DDC	0	genome.wustl.edu	37	7	50535009	50535009	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	50535009	50535009	A	G	SNP	DDC	ENST00000357936	human	ensembl	74_37	-1	known	missense	c.1145	p.V382A	0.946	pfam_PyrdxlP-dep_de-COase,superfamily_PyrdxlP-dep_Trfase	pfam_PyrdxlP-dep_de-COase,pfam_ArAA_b-elim_lyase/Thr_aldolase,superfamily_PyrdxlP-dep_Trfase,prints_Aromatic_deC	-	no_errors	DDC	HGNC	ENSG00000132437				102	0	0	96	11	10.2804
RBAK	0	genome.wustl.edu	37	7	5104918	5104918	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	5104918	5104918	A	G	SNP	RBAK	ENST00000353796	human	ensembl	74_37	+1	known	missense	c.1831	p.T611A	0.529	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	RBAK	HGNC	ENSG00000146587				74	0	0	50	8	13.7931
COBL	0	genome.wustl.edu	37	7	51095676	51095676	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	51095676	51095676	G	A	SNP	COBL	ENST00000395542	human	ensembl	74_37	-1	known	silent	c.3363	p.G1121	0.006	NULL	pfam_Cordon-bleu_ubiquitin_domain,pfam_WH2_dom,smart_WH2_dom,pfscan_WH2_dom	-	no_errors	COBL	HGNC	ENSG00000106078				56	0	0	76	4	5
COBL	0	genome.wustl.edu	37	7	51096557	51096557	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	51096557	51096557	C	A	SNP	COBL	ENST00000395542	human	ensembl	74_37	-1	known	missense	c.2482	p.G828C	0.000	NULL	pfam_Cordon-bleu_ubiquitin_domain,pfam_WH2_dom,smart_WH2_dom,pfscan_WH2_dom	-	no_errors	COBL	HGNC	ENSG00000106078				64	0	0	61	8	11.5942
COBL	0	genome.wustl.edu	37	7	51096763	51096763	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	51096763	51096763	T	A	SNP	COBL	ENST00000395542	human	ensembl	74_37	-1	known	missense	c.2276	p.N759I	0.000	NULL	pfam_Cordon-bleu_ubiquitin_domain,pfam_WH2_dom,smart_WH2_dom,pfscan_WH2_dom	-	no_errors	COBL	HGNC	ENSG00000106078				137	0	0	122	16	11.5942
WIPI2	0	genome.wustl.edu	37	7	5232779	5232779	+	Silent	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	5232779	5232779	T	A	SNP	WIPI2	ENST00000288828	human	ensembl	74_37	+1	known	silent	c.105	p.G35	0.001	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	WIPI2	HGNC	ENSG00000157954				140	0	0	117	8	6.4
WIPI2	0	genome.wustl.edu	37	7	5265492	5265492	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	5265492	5265492	G	A	SNP	WIPI2	ENST00000288828	human	ensembl	74_37	+1	known	missense	c.779	p.G260D	0.935	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	WIPI2	HGNC	ENSG00000157954				37	0	0	39	3	7.14286
TNRC18	0	genome.wustl.edu	37	7	5352438	5352438	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	5352438	5352438	G	A	SNP	TNRC18	ENST00000399537	human	ensembl	74_37	-1	known	missense	c.8084	p.A2695V	0.005	NULL	pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	-	no_errors	TNRC18	HGNC	ENSG00000182095				20	0	0	5	3	37.5
TNRC18	0	genome.wustl.edu	37	7	5427427	5427427	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	5427427	5427427	T	A	SNP	TNRC18	ENST00000399537	human	ensembl	74_37	-1	known	missense	c.2028	p.E676D	0.993	NULL	pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	-	no_errors	TNRC18	HGNC	ENSG00000182095				41	0	0	38	7	15.5556
EGFR	0	genome.wustl.edu	37	7	55229200	55229200	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	55229200	55229200	G	T	SNP	EGFR	ENST00000275493	human	ensembl	74_37	+1	known	missense	c.1507	p.G503C	0.008	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,smart_Furin_repeat	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	EGFR	HGNC	ENSG00000146648				82	0	0	70	6	7.89474
LANCL2	0	genome.wustl.edu	37	7	55496101	55496101	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	55496101	55496101	G	A	SNP	LANCL2	ENST00000254770	human	ensembl	74_37	+1	known	missense	c.1219	p.G407R	1.000	pfam_LANC-like	pfam_LANC-like,superfamily_6-hairpin_glycosidase-like,prints_LanC-like_prot_euk,prints_LANC-like	-	no_errors	LANCL2	HGNC	ENSG00000132434				75	0	0	57	11	16.1765
CCT6A	0	genome.wustl.edu	37	7	56129476	56129476	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	56129476	56129476	A	T	SNP	CCT6A	ENST00000275603	human	ensembl	74_37	+1	known	missense	c.1384	p.T462S	1.000	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,tigrfam_Chap_CCT_zeta	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,superfamily_GroEL-like_apical_dom,prints_Chaperone_TCP-1,prints_Chaprnin_Cpn60,tigrfam_Chap_CCT_zeta	-	no_errors	CCT6A	HGNC	ENSG00000146731				61	0	0	42	5	10.6383
SUMF2	0	genome.wustl.edu	37	7	56132072	56132072	+	Splice_Site	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	56132072	56132072	G	A	SNP	SUMF2	ENST00000342190	human	ensembl	74_37	+1	known	splice_site	c.124+1	e1+1	1.000	-	-	-	no_errors	SUMF2	HGNC	ENSG00000129103				13	0	0	19	5	20.8333
SUMF2	0	genome.wustl.edu	37	7	56146161	56146161	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	56146161	56146161	G	A	SNP	SUMF2	ENST00000434526	human	ensembl	74_37	+1	known	missense	c.838	p.A280T	0.055	pfam_FGE_dom,superfamily_C-type_lectin_fold	pfam_FGE_dom,superfamily_C-type_lectin_fold	-	no_errors	SUMF2	HGNC	ENSG00000129103				43	0	0	27	4	12.9032
EIF2AK1	0	genome.wustl.edu	37	7	6064312	6064312	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	6064312	6064312	C	T	SNP	EIF2AK1	ENST00000199389	human	ensembl	74_37	-1	known	missense	c.1885	p.V629M	0.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	EIF2AK1	HGNC	ENSG00000086232				123	1	0.806452	96	23	19.3277
USP42	0	genome.wustl.edu	37	7	6193762	6193762	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	6193762	6193762	G	A	SNP	USP42	ENST00000306177	human	ensembl	74_37	+1	known	silent	c.2577	p.P859	0.338	NULL	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP42	HGNC	ENSG00000106346				42	0	0	51	4	7.27273
ZNF680	0	genome.wustl.edu	37	7	63982663	63982663	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	63982663	63982663	C	T	SNP	ZNF680	ENST00000309683	human	ensembl	74_37	-1	known	missense	c.469	p.D157N	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF680	HGNC	ENSG00000173041				65	0	0	35	4	10.2564
ZNF138	0	genome.wustl.edu	37	7	64291846	64291846	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	64291846	64291846	G	A	SNP	ZNF138	ENST00000359735	human	ensembl	74_37	+1	known	missense	c.55	p.A19T	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF138	HGNC	ENSG00000197008				130	0	0	80	12	13.0435
ZNF273	0	genome.wustl.edu	37	7	64377979	64377979	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	64377979	64377979	T	C	SNP	ZNF273	ENST00000476120	human	ensembl	74_37	+1	known	silent	c.123	p.D41	0.735	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF273	HGNC	ENSG00000198039				162	0	0	123	13	9.55882
ZNF117	0	genome.wustl.edu	37	7	64438701	64438701	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	64438701	64438701	G	A	SNP	ZNF117	ENST00000282869	human	ensembl	74_37	-1	known	silent	c.1248	p.L416	0.002	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF117	HGNC	ENSG00000152926				105	0	0	82	11	11.828
CRCP	0	genome.wustl.edu	37	7	65599349	65599349	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	65599349	65599349	A	G	SNP	CRCP	ENST00000395326	human	ensembl	74_37	+1	known	missense	c.227	p.H76R	1.000	pfam_RNA_pol_II_Rpb4,superfamily_HRDC-like,smart_RNA_pol_II_Rpb4_core	pfam_RNA_pol_II_Rpb4,superfamily_HRDC-like,smart_RNA_pol_II_Rpb4_core	-	no_errors	CRCP	HGNC	ENSG00000241258				150	0	0	100	8	7.40741
TPST1	0	genome.wustl.edu	37	7	65705699	65705699	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	65705699	65705699	G	A	SNP	TPST1	ENST00000304842	human	ensembl	74_37	+1	known	missense	c.287	p.R96H	1.000	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	TPST1	HGNC	ENSG00000169902				88	0	0	62	8	11.4286
TYW1	0	genome.wustl.edu	37	7	66582482	66582482	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	66582482	66582482	G	A	SNP	TYW1	ENST00000359626	human	ensembl	74_37	+1	known	silent	c.1575	p.P525	0.883	pfam_rSAM	pfam_rSAM,pfam_Flavodoxin/NO_synth,pfam_tRNA_wybutosine-synth,pfscan_Flavodoxin/NO_synth,prints_Flavdoxin	-	no_errors	TYW1	HGNC	ENSG00000198874				101	1	0.980392	68	10	12.8205
PMS2P4	0	genome.wustl.edu	37	7	66764405	66764405	+	RNA	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	66764405	66764405	T	C	SNP	PMS2P4	ENST00000414507	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	PMS2P4	HGNC	ENSG00000067601				274	0	0	219	18	7.59494
PMS2CL	0	genome.wustl.edu	37	7	6776735	6776735	+	RNA	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	6776735	6776735	T	C	SNP	PMS2CL	ENST00000486256	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PMS2CL	HGNC	ENSG00000187953				81	0	0	68	4	5.55556
AUTS2	0	genome.wustl.edu	37	7	70255176	70255176	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	70255176	70255176	C	T	SNP	AUTS2	ENST00000342771	human	ensembl	74_37	+1	known	silent	c.2974	p.L992	0.473	NULL	prints_AUTS2	-	no_errors	AUTS2	HGNC	ENSG00000158321				28	0	0	23	4	14.8148
WBSCR17	0	genome.wustl.edu	37	7	70880917	70880917	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	70880917	70880917	A	G	SNP	WBSCR17	ENST00000333538	human	ensembl	74_37	+1	known	missense	c.632	p.Y211C	1.000	pfam_Glyco_trans_2	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	WBSCR17	HGNC	ENSG00000185274				44	0	0	31	7	18.4211
WBSCR17	0	genome.wustl.edu	37	7	71135084	71135084	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	71135084	71135084	C	T	SNP	WBSCR17	ENST00000333538	human	ensembl	74_37	+1	known	missense	c.1394	p.A465V	0.004	superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	WBSCR17	HGNC	ENSG00000185274				250	0	0	175	13	6.91489
TYW1B	0	genome.wustl.edu	37	7	72209569	72209569	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	72209569	72209569	G	A	SNP	TYW1B	ENST00000438904	human	ensembl	74_37	-1	known	missense	c.974	p.P325L	1.000	NULL	pfam_Flavodoxin/NO_synth,pfscan_Flavodoxin/NO_synth,prints_Flavdoxin	-	no_errors	TYW1B	HGNC	ENSG00000254184				72	0	0	60	7	10.4478
MLXIPL	0	genome.wustl.edu	37	7	73010717	73010717	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	73010717	73010717	G	A	SNP	MLXIPL	ENST00000313375	human	ensembl	74_37	-1	known	missense	c.1915	p.R639W	1.000	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	MLXIPL	HGNC	ENSG00000009950				72	0	0	70	26	27.0833
CLDN4	0	genome.wustl.edu	37	7	73245601	73245601	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	73245601	73245601	T	C	SNP	CLDN4	ENST00000340958	human	ensembl	74_37	+1	known	missense	c.70	p.C24R	0.999	pfam_PMP22/EMP/MP20/Claudin	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin,prints_Claudin4	-	no_errors	CLDN4	HGNC	ENSG00000189143				41	0	0	50	4	7.40741
CLDN4	0	genome.wustl.edu	37	7	73246012	73246012	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	73246012	73246012	G	T	SNP	CLDN4	ENST00000340958	human	ensembl	74_37	+1	known	missense	c.481	p.G161C	1.000	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin,prints_Claudin4	-	no_errors	CLDN4	HGNC	ENSG00000189143				46	0	0	54	5	8.47458
ELN	0	genome.wustl.edu	37	7	73462877	73462877	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	73462877	73462877	G	A	SNP	ELN	ENST00000358929	human	ensembl	74_37	+1	known	missense	c.790	p.A264T	0.976	NULL	prints_Tropoelastin	-	no_errors	ELN	HGNC	ENSG00000049540				42	0	0	52	9	14.7541
LIMK1	0	genome.wustl.edu	37	7	73510954	73510954	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	73510954	73510954	G	A	SNP	LIMK1	ENST00000336180	human	ensembl	74_37	+1	known	missense	c.155	p.C52Y	1.000	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Znf_LIM,pfam_PDZ,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,superfamily_PDZ,smart_Znf_LIM,smart_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_LIM,pfscan_PDZ,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	LIMK1	HGNC	ENSG00000106683				60	0	0	45	8	15.0943
EIF4H	0	genome.wustl.edu	37	7	73604186	73604186	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	73604186	73604186	C	A	SNP	EIF4H	ENST00000265753	human	ensembl	74_37	+1	known	missense	c.347	p.A116E	1.000	pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	EIF4H	HGNC	ENSG00000106682				81	0	0	79	5	5.95238
RFC2	0	genome.wustl.edu	37	7	73666758	73666758	+	Splice_Site	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	73666758	73666758	C	T	SNP	RFC2	ENST00000055077	human	ensembl	74_37	-1	known	splice_site	c.183+1	e2+1	1.000	-	-	-	no_errors	RFC2	HGNC	ENSG00000049541				64	0	0	65	7	9.72222
CLIP2	0	genome.wustl.edu	37	7	73731916	73731916	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	73731916	73731916	G	A	SNP	CLIP2	ENST00000223398	human	ensembl	74_37	+1	known	missense	c.40	p.G14R	1.000	NULL	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,superfamily_t-SNARE,pfscan_CAP-Gly_domain	-	no_errors	CLIP2	HGNC	ENSG00000106665				87	0	0	119	10	7.75194
GTF2IRD1	0	genome.wustl.edu	37	7	73935629	73935629	+	Splice_Site	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	73935629	73935629	T	C	SNP	GTF2IRD1	ENST00000265755	human	ensembl	74_37	+1	known	splice_site	c.1006+2	e6+2	1.000	-	-	-	no_errors	GTF2IRD1	HGNC	ENSG00000006704				46	0	0	48	3	5.88235
COL28A1	0	genome.wustl.edu	37	7	7476083	7476083	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	7476083	7476083	T	C	SNP	COL28A1	ENST00000399429	human	ensembl	74_37	-1	known	silent	c.1803	p.G601	1.000	NULL	pfam_Collagen,pfam_VWF_A,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,smart_VWF_A,smart_Prot_inh_Kunz-m,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m	-	no_errors	COL28A1	HGNC	ENSG00000215018				91	0	0	59	5	7.8125
POM121C	0	genome.wustl.edu	37	7	75068445	75068445	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	75068445	75068445	T	C	SNP	POM121C	ENST00000257665	human	ensembl	74_37	-1	known	silent	c.1011	p.G337	0.999	NULL	NULL	-	no_errors	POM121C	HGNC	ENSG00000135213				221	0	0	157	11	6.54762
RHBDD2	0	genome.wustl.edu	37	7	75517387	75517387	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	75517387	75517387	C	T	SNP	RHBDD2	ENST00000006777	human	ensembl	74_37	+1	known	missense	c.815	p.T272M	1.000	NULL	pfam_Peptidase_S54_rhomboid_dom	-	no_errors	RHBDD2	HGNC	ENSG00000005486				123	0	0	115	33	22.2973
POR	0	genome.wustl.edu	37	7	75614176	75614176	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	75614176	75614176	C	T	SNP	POR	ENST00000461988	human	ensembl	74_37	+1	known	missense	c.1148	p.P383L	1.000	pfam_FAD-binding_1,superfamily_Riboflavin_synthase-like_b-brl	pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,superfamily_Riboflavin_synthase-like_b-brl,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	POR	HGNC	ENSG00000127948				56	0	0	48	5	9.43396
YWHAG	0	genome.wustl.edu	37	7	75959437	75959437	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	75959437	75959437	C	T	SNP	YWHAG	ENST00000307630	human	ensembl	74_37	-1	known	silent	c.201	p.E67	1.000	pfam_14-3-3_domain,superfamily_14-3-3_domain,smart_14-3-3_domain,pirsf_14-3-3	pfam_14-3-3_domain,superfamily_14-3-3_domain,smart_14-3-3_domain,pirsf_14-3-3,prints_14-3-3	-	no_errors	YWHAG	HGNC	ENSG00000170027				176	0	0	124	15	10.7914
DTX2	0	genome.wustl.edu	37	7	76126704	76126704	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	76126704	76126704	C	T	SNP	DTX2	ENST00000324432	human	ensembl	74_37	+1	known	missense	c.1060	p.R354C	1.000	NULL	pfam_WWE-dom,smart_WWE-dom_subgr,smart_Znf_RING,pfscan_WWE-dom,pfscan_Znf_RING	-	no_errors	DTX2	HGNC	ENSG00000091073				131	0	0	121	13	9.70149
MIOS	0	genome.wustl.edu	37	7	7625282	7625282	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	7625282	7625282	A	G	SNP	MIOS	ENST00000340080	human	ensembl	74_37	+1	known	missense	c.1664	p.N555S	1.000	NULL	smart_WD40_repeat	-	no_errors	MIOS	HGNC	ENSG00000164654				146	0	0	80	27	25.2336
MIOS	0	genome.wustl.edu	37	7	7636009	7636009	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	7636009	7636009	C	T	SNP	MIOS	ENST00000340080	human	ensembl	74_37	+1	known	missense	c.2318	p.T773I	1.000	NULL	smart_WD40_repeat	-	no_errors	MIOS	HGNC	ENSG00000164654				162	0	0	113	10	8.13008
FGL2	0	genome.wustl.edu	37	7	76825713	76825713	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	76825713	76825713	G	A	SNP	FGL2	ENST00000248598	human	ensembl	74_37	-1	known	silent	c.1203	p.V401	0.998	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	-	no_errors	FGL2	HGNC	ENSG00000127951				68	0	0	43	13	23.2143
FGL2	0	genome.wustl.edu	37	7	76829058	76829058	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	76829058	76829058	C	A	SNP	FGL2	ENST00000248598	human	ensembl	74_37	-1	known	missense	c.53	p.G18V	0.001	NULL	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	-	no_errors	FGL2	HGNC	ENSG00000127951				93	0	0	71	7	8.97436
MAGI2	0	genome.wustl.edu	37	7	77708270	77708270	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	77708270	77708270	C	A	SNP	MAGI2	ENST00000354212	human	ensembl	74_37	-1	known	nonsense	c.3700	p.E1234*	1.000	superfamily_PDZ	pfam_PDZ,pfam_WW_dom,pfam_GK/Ca_channel_bsu,superfamily_PDZ,superfamily_P-loop_NTPase,superfamily_WW_dom,smart_PDZ,smart_GK/Ca_channel_bsu,smart_WW_dom,pfscan_PDZ,pfscan_WW_dom,pfscan_Guanylate_kin-like	-	no_errors	MAGI2	HGNC	ENSG00000187391				140	0	0	108	10	8.47458
MAGI2	0	genome.wustl.edu	37	7	77789472	77789472	+	Silent	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	77789472	77789472	G	T	SNP	MAGI2	ENST00000354212	human	ensembl	74_37	-1	known	silent	c.2715	p.A905	1.000	superfamily_PDZ	pfam_PDZ,pfam_WW_dom,pfam_GK/Ca_channel_bsu,superfamily_PDZ,superfamily_P-loop_NTPase,superfamily_WW_dom,smart_PDZ,smart_GK/Ca_channel_bsu,smart_WW_dom,pfscan_PDZ,pfscan_WW_dom,pfscan_Guanylate_kin-like	-	no_errors	MAGI2	HGNC	ENSG00000187391				71	0	0	63	8	11.2676
HGF	0	genome.wustl.edu	37	7	81374395	81374395	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	81374395	81374395	T	C	SNP	HGF	ENST00000222390	human	ensembl	74_37	-1	known	missense	c.667	p.M223V	1.000	pfam_Kringle,superfamily_Kringle-like,smart_Kringle,pfscan_Kringle	pfam_Kringle,pfam_Peptidase_S1,pfam_PAN-1_domain,superfamily_Trypsin-like_Pept_dom,superfamily_Kringle-like,smart_Pan_app,smart_Kringle,smart_Peptidase_S1,pfscan_Pan_app,pfscan_Kringle,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	HGF	HGNC	ENSG00000019991				73	0	0	48	4	7.69231
HGF	0	genome.wustl.edu	37	7	81381566	81381566	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	81381566	81381566	C	T	SNP	HGF	ENST00000222390	human	ensembl	74_37	-1	known	silent	c.495	p.S165	1.000	pfam_Kringle,superfamily_Kringle-like,smart_Kringle,pfscan_Kringle	pfam_Kringle,pfam_Peptidase_S1,pfam_PAN-1_domain,superfamily_Trypsin-like_Pept_dom,superfamily_Kringle-like,smart_Pan_app,smart_Kringle,smart_Peptidase_S1,pfscan_Pan_app,pfscan_Kringle,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	HGF	HGNC	ENSG00000019991				88	0	0	70	14	16.6667
PCLO	0	genome.wustl.edu	37	7	82579252	82579252	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	82579252	82579252	T	C	SNP	PCLO	ENST00000333891	human	ensembl	74_37	-1	known	missense	c.10652	p.K3551R	1.000	NULL	pfam_Znf_piccolo,pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472				95	0	0	80	9	10.1124
PCLO	0	genome.wustl.edu	37	7	82583904	82583904	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	82583904	82583904	C	A	SNP	PCLO	ENST00000333891	human	ensembl	74_37	-1	known	missense	c.6365	p.S2122I	1.000	NULL	pfam_Znf_piccolo,pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472				67	0	0	59	4	6.34921
ICA1	0	genome.wustl.edu	37	7	8272362	8272362	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	8272362	8272362	T	A	SNP	ICA1	ENST00000422063	human	ensembl	74_37	-1	known	missense	c.41	p.D14V	0.740	NULL	pfam_AH_dom,pfam_Islet_autoAg_Ica1_C,pfscan_AH_dom	-	no_errors	ICA1	HGNC	ENSG00000003147				122	0	0	83	11	11.7021
PCLO	0	genome.wustl.edu	37	7	82763785	82763785	+	Silent	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	82763785	82763785	T	A	SNP	PCLO	ENST00000333891	human	ensembl	74_37	-1	known	silent	c.3081	p.P1027	0.000	superfamily_Znf_FYVE_PHD	pfam_Znf_piccolo,pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472				62	0	0	35	15	30
PCLO	0	genome.wustl.edu	37	7	82784146	82784146	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	82784146	82784146	T	C	SNP	PCLO	ENST00000333891	human	ensembl	74_37	-1	known	missense	c.1811	p.K604R	1.000	pfam_Znf_piccolo,superfamily_Znf_FYVE_PHD	pfam_Znf_piccolo,pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472				267	0	0	187	14	6.96517
PCLO	0	genome.wustl.edu	37	7	82785615	82785615	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	82785615	82785615	T	G	SNP	PCLO	ENST00000333891	human	ensembl	74_37	-1	known	missense	c.342	p.R114S	1.000	NULL	pfam_Znf_piccolo,pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472				95	0	0	58	5	7.93651
SEMA3D	0	genome.wustl.edu	37	7	84671486	84671486	+	Splice_Site	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	84671486	84671486	C	T	SNP	SEMA3D	ENST00000284136	human	ensembl	74_37	-1	known	splice_site	c.976+1	e8+1	1.000	-	-	-	no_errors	SEMA3D	HGNC	ENSG00000153993				313	0	0	222	23	9.38776
KIAA1324L	0	genome.wustl.edu	37	7	86541542	86541542	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	86541542	86541542	C	T	SNP	KIAA1324L	ENST00000450689	human	ensembl	74_37	-1	known	missense	c.2015	p.S672N	1.000	superfamily_Man6P_isomerase_rcpt-bd_dom,superfamily_Growth_fac_rcpt_N_dom	superfamily_Man6P_isomerase_rcpt-bd_dom,superfamily_Growth_fac_rcpt_N_dom	-	no_errors	KIAA1324L	HGNC	ENSG00000164659				156	0	0	107	23	17.6923
DMTF1	0	genome.wustl.edu	37	7	86802919	86802919	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	86802919	86802919	A	G	SNP	DMTF1	ENST00000331242	human	ensembl	74_37	+1	known	silent	c.396	p.Q132	1.000	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	DMTF1	HGNC	ENSG00000135164				81	0	0	66	6	8.33333
DMTF1	0	genome.wustl.edu	37	7	86824348	86824348	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	86824348	86824348	T	A	SNP	DMTF1	ENST00000331242	human	ensembl	74_37	+1	known	missense	c.2175	p.D725E	1.000	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	DMTF1	HGNC	ENSG00000135164				140	0	0	90	7	7.21649
ABCB1	0	genome.wustl.edu	37	7	87179871	87179871	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	87179871	87179871	C	T	SNP	ABCB1	ENST00000265724	human	ensembl	74_37	-1	known	silent	c.1137	p.S379	0.052	NULL	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,pfam_ABC_ATPase_put,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCB1	HGNC	ENSG00000085563				115	0	0	61	16	20.7792
DBF4	0	genome.wustl.edu	37	7	87507464	87507464	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	87507464	87507464	G	A	SNP	DBF4	ENST00000265728	human	ensembl	74_37	+1	known	missense	c.143	p.G48E	1.000	superfamily_BRCT_dom	pfam_Znf_DBF,superfamily_BRCT_dom,smart_Znf_DBF	-	no_errors	DBF4	HGNC	ENSG00000006634				245	0	0	149	9	5.6962
DBF4	0	genome.wustl.edu	37	7	87516180	87516180	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	87516180	87516180	T	A	SNP	DBF4	ENST00000265728	human	ensembl	74_37	+1	known	missense	c.421	p.L141I	1.000	superfamily_BRCT_dom	pfam_Znf_DBF,superfamily_BRCT_dom,smart_Znf_DBF	-	no_errors	DBF4	HGNC	ENSG00000006634				186	0	0	117	10	7.87402
ADAM22	0	genome.wustl.edu	37	7	87760680	87760680	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	87760680	87760680	A	G	SNP	ADAM22	ENST00000265727	human	ensembl	74_37	+1	known	missense	c.922	p.T308A	1.000	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM22	HGNC	ENSG00000008277				89	0	0	59	6	9.23077
ADAM22	0	genome.wustl.edu	37	7	87780325	87780325	+	Silent	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	87780325	87780325	A	T	SNP	ADAM22	ENST00000265727	human	ensembl	74_37	+1	known	silent	c.1596	p.G532	0.759	pfam_ADAM_Cys-rich,smart_ADAM_Cys-rich	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM22	HGNC	ENSG00000008277				181	0	0	117	31	20.9459
STEAP4	0	genome.wustl.edu	37	7	87912203	87912203	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	87912203	87912203	A	G	SNP	STEAP4	ENST00000380079	human	ensembl	74_37	-1	known	missense	c.737	p.I246T	0.959	NULL	pfam_Fe3_Rdtase_TM_dom	-	no_errors	STEAP4	HGNC	ENSG00000127954				98	0	0	82	7	7.86517
C7orf62	0	genome.wustl.edu	37	7	88424168	88424168	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	88424168	88424168	T	C	SNP	C7orf62	ENST00000297203	human	ensembl	74_37	-1	known	missense	c.89	p.Y30C	1.000	NULL	NULL	-	no_errors	C7orf62	HGNC	ENSG00000164645				178	0	0	148	15	9.20245
ZNF804B	0	genome.wustl.edu	37	7	88847605	88847605	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	88847605	88847605	A	C	SNP	ZNF804B	ENST00000333190	human	ensembl	74_37	+1	known	missense	c.245	p.K82T	1.000	pfam_Znf_C2H2_jaz	pfam_Znf_C2H2_jaz	-	no_errors	ZNF804B	HGNC	ENSG00000182348				86	0	0	90	7	7.21649
STEAP2	0	genome.wustl.edu	37	7	89854552	89854552	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	89854552	89854552	C	T	SNP	STEAP2	ENST00000287908	human	ensembl	74_37	+1	known	silent	c.156	p.C52	1.000	NULL	pfam_Fe3_Rdtase_TM_dom	-	no_errors	STEAP2	HGNC	ENSG00000157214				109	0	0	61	14	18.6667
STEAP2	0	genome.wustl.edu	37	7	89856621	89856621	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	89856621	89856621	G	T	SNP	STEAP2	ENST00000287908	human	ensembl	74_37	+1	known	missense	c.829	p.A277S	1.000	pfam_Fe3_Rdtase_TM_dom	pfam_Fe3_Rdtase_TM_dom	-	no_errors	STEAP2	HGNC	ENSG00000157214				101	0	0	91	11	10.7843
GTPBP10	0	genome.wustl.edu	37	7	90014459	90014459	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	90014459	90014459	T	C	SNP	GTPBP10	ENST00000222511	human	ensembl	74_37	+1	known	silent	c.1155	p.D385	0.000	pirsf_GTP-bd_Obg/CgtA	pfam_GTP_binding_domain,pfam_GTP1_OBG_dom,pfam_Fe2_transport_prot_B_N,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,superfamily_GTP1_OBG_dom,pirsf_GTP-bd_Obg/CgtA,prints_GTP_binding_domain	-	no_errors	GTPBP10	HGNC	ENSG00000105793				126	0	0	73	6	7.59494
CDK14	0	genome.wustl.edu	37	7	90356055	90356055	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	90356055	90356055	T	C	SNP	CDK14	ENST00000380050	human	ensembl	74_37	+1	known	missense	c.298	p.C100R	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDK14	HGNC	ENSG00000058091				93	0	0	67	8	10.6667
FZD1	0	genome.wustl.edu	37	7	90895558	90895558	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	90895558	90895558	C	T	SNP	FZD1	ENST00000287934	human	ensembl	74_37	+1	known	missense	c.1363	p.P455S	1.000	pfam_Frizzled,pfscan_GPCR_2-like,prints_Frizzled	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	FZD1	HGNC	ENSG00000157240				82	0	0	76	11	12.6437
MTERF	0	genome.wustl.edu	37	7	91503256	91503256	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	91503256	91503256	A	G	SNP	MTERF	ENST00000351870	human	ensembl	74_37	-1	known	silent	c.852	p.L284	1.000	pfam_Mit_transcrip_term-rel	pfam_Mit_transcrip_term-rel,smart_Mit_transcrip_term-rel	-	no_errors	MTERF	HGNC	ENSG00000127989				77	0	0	57	3	5
AKAP9	0	genome.wustl.edu	37	7	91708815	91708815	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	91708815	91708815	T	A	SNP	AKAP9	ENST00000359028	human	ensembl	74_37	+1	known	missense	c.7404	p.D2468E	0.010	NULL	pfam_PACT_domain,superfamily_Prefoldin,superfamily_YbaB	-	no_errors	AKAP9	HGNC	ENSG00000127914				88	0	0	74	8	9.7561
ANKIB1	0	genome.wustl.edu	37	7	92020590	92020590	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	92020590	92020590	G	A	SNP	ANKIB1	ENST00000265742	human	ensembl	74_37	+1	known	silent	c.2163	p.R721	1.000	NULL	pfam_Znf_C6HC,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Znf_RING,smart_Znf_C6HC,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Ubiquitin-int_motif,pfscan_Znf_RING	-	no_errors	ANKIB1	HGNC	ENSG00000001629				79	0	0	70	7	9.09091
PEX1	0	genome.wustl.edu	37	7	92129140	92129140	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	92129140	92129140	A	C	SNP	PEX1	ENST00000248633	human	ensembl	74_37	-1	known	missense	c.2596	p.F866V	1.000	superfamily_P-loop_NTPase	pfam_ATPase_AAA_core,pfam_Peroxisome_synth_fac_1_a/b,pfam_PEX-1N,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_P-loop_NTPase,superfamily_Asp_de-COase-like_dom,smart_AAA+_ATPase	-	no_errors	PEX1	HGNC	ENSG00000127980				120	0	0	83	6	6.74157
CDK6	0	genome.wustl.edu	37	7	92247520	92247520	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	92247520	92247520	C	T	SNP	CDK6	ENST00000265734	human	ensembl	74_37	-1	known	missense	c.700	p.V234M	0.931	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDK6	HGNC	ENSG00000105810				54	0	0	54	6	10
CDK6	0	genome.wustl.edu	37	7	92404119	92404119	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	92404119	92404119	C	T	SNP	CDK6	ENST00000265734	human	ensembl	74_37	-1	known	missense	c.260	p.R87Q	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDK6	HGNC	ENSG00000105810				81	0	0	51	7	12.069
SAMD9	0	genome.wustl.edu	37	7	92734465	92734465	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	92734465	92734465	A	T	SNP	SAMD9	ENST00000379958	human	ensembl	74_37	-1	known	missense	c.946	p.C316S	0.985	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,superfamily_P-loop_NTPase,smart_SAM,pfscan_SAM	-	no_errors	SAMD9	HGNC	ENSG00000205413				96	0	0	73	8	9.87654
SAMD9	0	genome.wustl.edu	37	7	92735292	92735292	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	92735292	92735292	T	C	SNP	SAMD9	ENST00000379958	human	ensembl	74_37	-1	known	missense	c.119	p.D40G	1.000	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,superfamily_P-loop_NTPase,smart_SAM,pfscan_SAM	-	no_errors	SAMD9	HGNC	ENSG00000205413				180	0	0	126	9	6.66667
SAMD9L	0	genome.wustl.edu	37	7	92760589	92760589	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	92760589	92760589	A	G	SNP	SAMD9L	ENST00000318238	human	ensembl	74_37	-1	known	missense	c.4696	p.S1566P	0.575	NULL	superfamily_SAM/pointed,superfamily_P-loop_NTPase,pfscan_SAM	-	no_errors	SAMD9L	HGNC	ENSG00000177409				65	0	0	55	6	9.83607
CASD1	0	genome.wustl.edu	37	7	94146970	94146970	+	Splice_Site	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	94146970	94146970	T	C	SNP	CASD1	ENST00000297273	human	ensembl	74_37	+1	known	splice_site	c.230+2	e2+2	1.000	-	-	-	no_errors	CASD1	HGNC	ENSG00000127995				84	0	0	57	4	6.55738
PPP1R9A	0	genome.wustl.edu	37	7	94827660	94827660	+	Splice_Site	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	94827660	94827660	G	T	SNP	PPP1R9A	ENST00000289495	human	ensembl	74_37	+1	known	splice_site	c.1755-1	e5-1	1.000	-	-	-	no_errors	PPP1R9A	HGNC	ENSG00000158528				76	0	0	68	7	9.33333
PPP1R9A	0	genome.wustl.edu	37	7	94879417	94879417	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	94879417	94879417	A	G	SNP	PPP1R9A	ENST00000289495	human	ensembl	74_37	+1	known	missense	c.2180	p.E727G	1.000	superfamily_Smac_DIABLO-like	pfam_SAM_2,pfam_SAM_type1,pfam_PDZ,superfamily_PDZ,superfamily_SAM/pointed,superfamily_Smac_DIABLO-like,smart_PDZ,smart_SAM,pfscan_PDZ,pfscan_SAM	-	no_errors	PPP1R9A	HGNC	ENSG00000158528				62	0	0	52	3	5.45455
PON1	0	genome.wustl.edu	37	7	94944662	94944662	+	Silent	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	94944662	94944662	A	C	SNP	PON1	ENST00000222381	human	ensembl	74_37	-1	known	silent	c.342	p.P114	1.000	NULL	pfam_Arylesterase,pfam_SGL,pfam_Strictosidine_synth_cons-reg,prints_Arylesterase,prints_Paraoxonase1	-	no_errors	PON1	HGNC	ENSG00000005421				68	0	0	51	5	8.92857
PON1	0	genome.wustl.edu	37	7	95025597	95025597	+	Silent	SNP	C	C	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	95025597	95025597	C	G	SNP	PON1	ENST00000542556	human	ensembl	74_37	-1	known	silent	c.66	p.L22	0.010	prints_Paraoxonase2	pfam_Arylesterase,pfam_SGL,pfam_Strictosidine_synth_cons-reg,prints_Arylesterase,prints_Paraoxonase2,prints_Paraoxonase1	-	no_errors	PON1	HGNC	ENSG00000005421				97	0	0	92	7	7.07071
SLC25A13	0	genome.wustl.edu	37	7	95813609	95813609	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	95813609	95813609	C	T	SNP	SLC25A13	ENST00000416240	human	ensembl	74_37	-1	known	missense	c.1160	p.G387D	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_EF_hand_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	-	no_errors	SLC25A13	HGNC	ENSG00000004864				115	0	0	86	7	7.52688
SLC25A13	0	genome.wustl.edu	37	7	95814285	95814285	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	95814285	95814285	T	C	SNP	SLC25A13	ENST00000416240	human	ensembl	74_37	-1	known	silent	c.975	p.Q325	0.003	superfamily_Mt_carrier_dom	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_EF_hand_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	-	no_errors	SLC25A13	HGNC	ENSG00000004864				115	0	0	84	8	8.69565
DLX6	0	genome.wustl.edu	37	7	96639170	96639170	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	96639170	96639170	T	A	SNP	DLX6	ENST00000518156	human	ensembl	74_37	+1	known	missense	c.693	p.N231K	1.000	superfamily_Homeodomain-like	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_HTH_motif,prints_Homeobox_metazoa	-	no_errors	DLX6	HGNC	ENSG00000006377				104	0	0	68	16	19.0476
DLX5	0	genome.wustl.edu	37	7	96650040	96650040	+	RNA	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	96650040	96650040	C	T	SNP	DLX5	ENST00000493764	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	DLX5	HGNC	ENSG00000105880				65	0	0	65	8	10.9589
ASNS	0	genome.wustl.edu	37	7	97498452	97498452	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	97498452	97498452	G	A	SNP	ASNS	ENST00000175506	human	ensembl	74_37	-1	known	missense	c.17	p.A6V	1.000	tigrfam_Asn_synth_AEB	pfam_Asn_synthase,pfam_GATase_dom,tigrfam_Asn_synth_AEB	-	no_errors	ASNS	HGNC	ENSG00000070669				64	0	0	42	9	17.6471
LMTK2	0	genome.wustl.edu	37	7	97766717	97766717	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	97766717	97766717	G	A	SNP	LMTK2	ENST00000297293	human	ensembl	74_37	+1	known	missense	c.194	p.C65Y	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	LMTK2	HGNC	ENSG00000164715				94	0	0	51	4	7.27273
LMTK2	0	genome.wustl.edu	37	7	97823866	97823866	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	97823866	97823866	A	G	SNP	LMTK2	ENST00000297293	human	ensembl	74_37	+1	known	silent	c.4089	p.T1363	0.054	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	LMTK2	HGNC	ENSG00000164715				56	0	0	48	4	7.69231
TECPR1	0	genome.wustl.edu	37	7	97860361	97860361	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	97860361	97860361	A	G	SNP	TECPR1	ENST00000379795	human	ensembl	74_37	-1	known	missense	c.2197	p.W733R	1.000	smart_Beta-propeller_rpt_TECPR	pfam_Beta-propeller_rpt_TECPR,superfamily_RCC1/BLIP-II,smart_Beta-propeller_rpt_TECPR,smart_Peroxin/Ferlin	-	no_errors	TECPR1	HGNC	ENSG00000205356				21	0	0	20	4	16.6667
TRRAP	0	genome.wustl.edu	37	7	98513399	98513399	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	98513399	98513399	G	T	SNP	TRRAP	ENST00000359863	human	ensembl	74_37	+1	known	missense	c.2253	p.K751N	1.000	superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	TRRAP	HGNC	ENSG00000196367				108	0	0	98	7	6.66667
TRRAP	0	genome.wustl.edu	37	7	98530903	98530903	+	Silent	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	98530903	98530903	C	A	SNP	TRRAP	ENST00000359863	human	ensembl	74_37	+1	known	silent	c.3892	p.R1298	0.014	superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	TRRAP	HGNC	ENSG00000196367				26	0	0	25	5	16.6667
TRRAP	0	genome.wustl.edu	37	7	98533266	98533266	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	98533266	98533266	C	T	SNP	TRRAP	ENST00000359863	human	ensembl	74_37	+1	known	missense	c.4079	p.P1360L	1.000	superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	TRRAP	HGNC	ENSG00000196367				56	0	0	46	4	8
SMURF1	0	genome.wustl.edu	37	7	98655120	98655120	+	Silent	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	98655120	98655120	A	T	SNP	SMURF1	ENST00000361125	human	ensembl	74_37	-1	known	silent	c.258	p.I86	0.998	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_HECT,pfam_WW_dom,pfam_C2_dom,superfamily_HECT,superfamily_C2_dom,superfamily_WW_dom,smart_C2_dom,smart_WW_dom,smart_HECT,pfscan_HECT,pfscan_C2_dom,pfscan_WW_dom	-	no_errors	SMURF1	HGNC	ENSG00000198742				84	0	0	56	8	12.5
PDAP1	0	genome.wustl.edu	37	7	99002518	99002518	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	99002518	99002518	G	A	SNP	PDAP1	ENST00000350498	human	ensembl	74_37	-1	known	silent	c.72	p.D24	0.992	NULL	pfam_Casein_kinase_sb_PP28	-	no_errors	PDAP1	HGNC	ENSG00000106244				41	0	0	50	5	9.09091
ATP5J2-PTCD1	0	genome.wustl.edu	37	7	99021445	99021445	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	99021445	99021445	T	C	SNP	ATP5J2-PTCD1	ENST00000413834	human	ensembl	74_37	-1	known	missense	c.2020	p.I674V	1.000	NULL	pfam_Pentatricopeptide_repeat,pfam_F1F0-ATPsyn_F_prd,tigrfam_Pentatricopeptide_repeat	-	no_errors	ATP5J2-PTCD1	HGNC	ENSG00000248919				134	0	0	147	8	5.16129
ATP5J2-PTCD1	0	genome.wustl.edu	37	7	99022974	99022974	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	99022974	99022974	T	C	SNP	ATP5J2-PTCD1	ENST00000413834	human	ensembl	74_37	-1	known	missense	c.1328	p.Q443R	0.002	NULL	pfam_Pentatricopeptide_repeat,pfam_F1F0-ATPsyn_F_prd,tigrfam_Pentatricopeptide_repeat	-	no_errors	ATP5J2-PTCD1	HGNC	ENSG00000248919				100	1	0.990099	99	10	9.17431
ZNF789	0	genome.wustl.edu	37	7	99084466	99084466	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	99084466	99084466	G	A	SNP	ZNF789	ENST00000331410	human	ensembl	74_37	+1	known	silent	c.633	p.R211	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF789	HGNC	ENSG00000198556				139	0	0	98	9	8.41121
ZNF394	0	genome.wustl.edu	37	7	99092051	99092051	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	99092051	99092051	C	A	SNP	ZNF394	ENST00000337673	human	ensembl	74_37	-1	known	nonsense	c.787	p.G263*	0.692	NULL	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF394	HGNC	ENSG00000160908				154	1	0.645161	141	13	8.44156
ZKSCAN5	0	genome.wustl.edu	37	7	99129621	99129621	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	99129621	99129621	T	C	SNP	ZKSCAN5	ENST00000326775	human	ensembl	74_37	+1	known	missense	c.2269	p.C757R	0.811	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZKSCAN5	HGNC	ENSG00000196652				97	0	0	93	10	9.70874
ZSCAN25	0	genome.wustl.edu	37	7	99227533	99227533	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	99227533	99227533	A	G	SNP	ZSCAN25	ENST00000334715	human	ensembl	74_37	+1	known	missense	c.1525	p.T509A	1.000	pfscan_Znf_C2H2	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN25	HGNC	ENSG00000197037				26	0	0	30	4	11.7647
CYP3A4	0	genome.wustl.edu	37	7	99366086	99366086	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	99366086	99366086	T	C	SNP	CYP3A4	ENST00000336411	human	ensembl	74_37	-1	known	silent	c.561	p.T187	0.895	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-II	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_CYP3A,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-II,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_B	-	no_errors	CYP3A4	HGNC	ENSG00000160868				119	0	0	88	6	6.38298
GJC3	0	genome.wustl.edu	37	7	99526644	99526644	+	Silent	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	99526644	99526644	A	C	SNP	GJC3	ENST00000312891	human	ensembl	74_37	-1	known	silent	c.600	p.G200	1.000	pfam_Connexin_CCC,prints_Connexin	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin	-	no_errors	GJC3	HGNC	ENSG00000176402				94	0	0	91	11	10.7843
ZKSCAN1	0	genome.wustl.edu	37	7	99631365	99631365	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	99631365	99631365	G	A	SNP	ZKSCAN1	ENST00000324306	human	ensembl	74_37	+1	known	missense	c.1237	p.A413T	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZKSCAN1	HGNC	ENSG00000106261				160	0	0	172	15	8.02139
GAL3ST4	0	genome.wustl.edu	37	7	99757655	99757655	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	99757655	99757655	G	A	SNP	GAL3ST4	ENST00000360039	human	ensembl	74_37	-1	known	missense	c.1357	p.R453C	1.000	pfam_Gal-3-0_sulfotransfrase	pfam_Gal-3-0_sulfotransfrase,superfamily_P-loop_NTPase	-	no_errors	GAL3ST4	HGNC	ENSG00000197093				50	0	0	53	23	30.2632
STAG3	0	genome.wustl.edu	37	7	99811392	99811392	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	99811392	99811392	G	A	SNP	STAG3	ENST00000317296	human	ensembl	74_37	+1	known	missense	c.3632	p.G1211E	0.641	NULL	pfam_STAG,superfamily_ARM-type_fold	-	no_errors	STAG3	HGNC	ENSG00000066923				153	0	0	97	41	29.7101
STAG3L5P-PVRIG2P-PILRB	0	genome.wustl.edu	37	7	99965089	99965089	+	RNA	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	99965089	99965089	T	C	SNP	STAG3L5P-PVRIG2P-PILRB	ENST00000310771	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.006	-	-	-	no_errors	STAG3L5P-PVRIG2P-PILRB	HGNC	ENSG00000272752				23	0	0	17	4	19.0476
VPS13B	0	genome.wustl.edu	37	8	100050747	100050747	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	100050747	100050747	A	G	SNP	VPS13B	ENST00000358544	human	ensembl	74_37	+1	known	missense	c.244	p.T82A	1.000	NULL	pfam_Autophagy-rel_C	-	no_errors	VPS13B	HGNC	ENSG00000132549				58	0	0	66	4	5.71429
VPS13B	0	genome.wustl.edu	37	8	100729416	100729416	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	100729416	100729416	T	A	SNP	VPS13B	ENST00000358544	human	ensembl	74_37	+1	known	missense	c.6547	p.S2183T	1.000	NULL	pfam_Autophagy-rel_C	-	no_errors	VPS13B	HGNC	ENSG00000132549				82	0	0	70	9	11.3924
RGS22	0	genome.wustl.edu	37	8	101020754	101020754	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	101020754	101020754	A	G	SNP	RGS22	ENST00000360863	human	ensembl	74_37	-1	known	missense	c.2210	p.I737T	0.998	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam	-	no_errors	RGS22	HGNC	ENSG00000132554				62	0	0	60	7	10.4478
FBXO43	0	genome.wustl.edu	37	8	101153423	101153423	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	101153423	101153423	A	G	SNP	FBXO43	ENST00000428847	human	ensembl	74_37	-1	known	silent	c.1059	p.G353	0.962	NULL	pfam_Znf_C6HC,superfamily_F-box_dom,smart_Znf_C6HC	-	no_errors	FBXO43	HGNC	ENSG00000156509				150	0	0	201	15	6.94444
SPAG1	0	genome.wustl.edu	37	8	101203638	101203638	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	101203638	101203638	A	G	SNP	SPAG1	ENST00000251809	human	ensembl	74_37	+1	known	missense	c.853	p.T285A	0.999	pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	SPAG1	HGNC	ENSG00000104450				85	0	0	89	7	7.29167
SPAG1	0	genome.wustl.edu	37	8	101237493	101237493	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	101237493	101237493	C	A	SNP	SPAG1	ENST00000251809	human	ensembl	74_37	+1	known	missense	c.1781	p.A594D	0.002	NULL	pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	SPAG1	HGNC	ENSG00000104450				75	0	0	62	8	11.4286
GRHL2	0	genome.wustl.edu	37	8	102589676	102589676	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	102589676	102589676	A	T	SNP	GRHL2	ENST00000251808	human	ensembl	74_37	+1	known	missense	c.932	p.D311V	0.998	pfam_CP2	pfam_CP2	-	no_errors	GRHL2	HGNC	ENSG00000083307				117	0	0	139	8	5.44218
RRM2B	0	genome.wustl.edu	37	8	103236354	103236354	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	103236354	103236354	T	C	SNP	RRM2B	ENST00000251810	human	ensembl	74_37	-1	known	missense	c.470	p.N157S	1.000	pfam_RNR_small,superfamily_Ferritin-like_SF	pfam_RNR_small,superfamily_Ferritin-like_SF	-	no_errors	RRM2B	HGNC	ENSG00000048392				223	0	0	212	29	12.0332
ODF1	0	genome.wustl.edu	37	8	103564230	103564230	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	103564230	103564230	G	T	SNP	ODF1	ENST00000285402	human	ensembl	74_37	+1	known	missense	c.275	p.R92M	1.000	NULL	pfam_a-crystallin/Hsp20_dom,superfamily_HSP20-like_chaperone,pfscan_a-crystallin/Hsp20_dom	-	no_errors	ODF1	HGNC	ENSG00000155087				138	1	0.719424	173	32	15.6098
ATP6V1C1	0	genome.wustl.edu	37	8	104078589	104078589	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	104078589	104078589	C	T	SNP	ATP6V1C1	ENST00000395862	human	ensembl	74_37	+1	known	missense	c.967	p.P323S	1.000	pfam_ATPase_V1-cplx_csu	pfam_ATPase_V1-cplx_csu	-	no_errors	ATP6V1C1	HGNC	ENSG00000155097				82	0	0	85	5	5.55556
RP1L1	0	genome.wustl.edu	37	8	10464716	10464716	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	10464716	10464716	G	A	SNP	RP1L1	ENST00000382483	human	ensembl	74_37	-1	known	missense	c.6892	p.P2298S	0.000	NULL	pfam_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1L1	HGNC	ENSG00000183638				221	0	0	300	56	15.7303
RP1L1	0	genome.wustl.edu	37	8	10465537	10465537	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	10465537	10465537	T	C	SNP	RP1L1	ENST00000382483	human	ensembl	74_37	-1	known	missense	c.6071	p.E2024G	0.381	NULL	pfam_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1L1	HGNC	ENSG00000183638				249	1	0.4	360	23	6.00522
RP1L1	0	genome.wustl.edu	37	8	10466551	10466551	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	10466551	10466551	G	A	SNP	RP1L1	ENST00000382483	human	ensembl	74_37	-1	known	missense	c.5057	p.A1686V	0.989	NULL	pfam_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1L1	HGNC	ENSG00000183638				104	0	0	120	12	9.09091
RP1L1	0	genome.wustl.edu	37	8	10466938	10466938	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	10466938	10466938	G	A	SNP	RP1L1	ENST00000382483	human	ensembl	74_37	-1	known	missense	c.4670	p.A1557V	0.323	NULL	pfam_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1L1	HGNC	ENSG00000183638				27	0	0	34	4	10.5263
RP1L1	0	genome.wustl.edu	37	8	10468315	10468315	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	10468315	10468315	C	T	SNP	RP1L1	ENST00000382483	human	ensembl	74_37	-1	known	missense	c.3293	p.S1098N	1.000	NULL	pfam_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1L1	HGNC	ENSG00000183638				90	0	0	139	8	5.44218
RP1L1	0	genome.wustl.edu	37	8	10468389	10468389	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	10468389	10468389	C	T	SNP	RP1L1	ENST00000382483	human	ensembl	74_37	-1	known	silent	c.3219	p.R1073	0.000	NULL	pfam_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1L1	HGNC	ENSG00000183638				31	0	0	37	3	7.5
RP1L1	0	genome.wustl.edu	37	8	10469390	10469390	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	10469390	10469390	C	T	SNP	RP1L1	ENST00000382483	human	ensembl	74_37	-1	known	missense	c.2218	p.V740I	0.000	NULL	pfam_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1L1	HGNC	ENSG00000183638				45	0	0	78	11	12.3596
RIMS2	0	genome.wustl.edu	37	8	104898191	104898191	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	104898191	104898191	G	A	SNP	RIMS2	ENST00000406091	human	ensembl	74_37	+1	known	missense	c.1364	p.R455Q	1.000	NULL	pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_Znf_FYVE_PHD,superfamily_PDZ,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ,pfscan_Znf_FYVE-typ,pfscan_Znf_FYVE-rel	-	no_errors	RIMS2	HGNC	ENSG00000176406				79	0	0	79	14	15.0538
RIMS2	0	genome.wustl.edu	37	8	104955055	104955055	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	104955055	104955055	C	A	SNP	RIMS2	ENST00000406091	human	ensembl	74_37	+1	known	missense	c.2602	p.L868I	1.000	superfamily_C2_dom	pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_Znf_FYVE_PHD,superfamily_PDZ,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ,pfscan_Znf_FYVE-typ,pfscan_Znf_FYVE-rel	-	no_errors	RIMS2	HGNC	ENSG00000176406				53	0	0	64	5	7.24638
DCSTAMP	0	genome.wustl.edu	37	8	105361020	105361020	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	105361020	105361020	T	C	SNP	DCSTAMP	ENST00000297581	human	ensembl	74_37	+1	known	silent	c.240	p.C80	0.118	NULL	pfam_DC_STAMP-like,superfamily_ABC1_TM_dom	-	no_errors	DCSTAMP	HGNC	ENSG00000164935				102	0	0	117	17	12.6866
LRP12	0	genome.wustl.edu	37	8	105521172	105521172	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	105521172	105521172	A	G	SNP	LRP12	ENST00000424843	human	ensembl	74_37	-1	known	silent	c.210	p.T70	0.996	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_LDrepeatLR_classA_rpt,superfamily_CUB_dom,superfamily_LDrepeatLR_classA_rpt,smart_CUB_dom,smart_LDrepeatLR_classA_rpt,pfscan_CUB_dom,pfscan_LDrepeatLR_classA_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP12	HGNC	ENSG00000147650				99	0	0	107	21	16.4062
LRP12	0	genome.wustl.edu	37	8	105521252	105521252	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	105521252	105521252	T	G	SNP	LRP12	ENST00000424843	human	ensembl	74_37	-1	known	missense	c.130	p.S44R	0.998	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_LDrepeatLR_classA_rpt,superfamily_CUB_dom,superfamily_LDrepeatLR_classA_rpt,smart_CUB_dom,smart_LDrepeatLR_classA_rpt,pfscan_CUB_dom,pfscan_LDrepeatLR_classA_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP12	HGNC	ENSG00000147650				169	0	0	169	11	6.11111
TMEM74	0	genome.wustl.edu	37	8	109796927	109796927	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	109796927	109796927	T	C	SNP	TMEM74	ENST00000297459	human	ensembl	74_37	-1	known	missense	c.401	p.N134S	0.000	NULL	NULL	-	no_errors	TMEM74	HGNC	ENSG00000164841				125	0	0	162	22	11.9565
PKHD1L1	0	genome.wustl.edu	37	8	110471910	110471910	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	110471910	110471910	A	G	SNP	PKHD1L1	ENST00000378402	human	ensembl	74_37	+1	known	missense	c.7091	p.Y2364C	1.000	NULL	pfam_IPT,pfam_G8_domain,pfam_PA14,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,superfamily_Cupredoxin,smart_IPT,smart_PA14,smart_PbH1	-	no_errors	PKHD1L1	HGNC	ENSG00000205038				37	0	0	42	6	12.5
PKHD1L1	0	genome.wustl.edu	37	8	110535613	110535613	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	110535613	110535613	C	T	SNP	PKHD1L1	ENST00000378402	human	ensembl	74_37	+1	known	missense	c.12482	p.T4161I	1.000	NULL	pfam_IPT,pfam_G8_domain,pfam_PA14,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,superfamily_Cupredoxin,smart_IPT,smart_PA14,smart_PbH1	-	no_errors	PKHD1L1	HGNC	ENSG00000205038				167	0	0	174	10	5.43478
EBAG9	0	genome.wustl.edu	37	8	110575641	110575641	+	Silent	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	110575641	110575641	A	T	SNP	EBAG9	ENST00000531677	human	ensembl	74_37	+1	novel	silent	c.537	p.V179	0.000	pirsf_Cancer-assoc_antigen_RCAS1	pirsf_Cancer-assoc_antigen_RCAS1	-	no_errors	EBAG9	HGNC	ENSG00000147654				398	0	0	498	30	5.68182
XKR6	0	genome.wustl.edu	37	8	11058241	11058241	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	11058241	11058241	C	G	SNP	XKR6	ENST00000416569	human	ensembl	74_37	-1	known	missense	c.608	p.G203A	1.000	pfam_Transport_prot_XK	pfam_Transport_prot_XK	-	no_errors	XKR6	HGNC	ENSG00000171044				12	0	0	21	5	19.2308
SYBU	0	genome.wustl.edu	37	8	110587443	110587443	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	110587443	110587443	C	T	SNP	SYBU	ENST00000276646	human	ensembl	74_37	-1	known	missense	c.1684	p.A562T	0.000	NULL	NULL	-	no_errors	SYBU	HGNC	ENSG00000147642				92	0	0	97	14	12.6126
SYBU	0	genome.wustl.edu	37	8	110588041	110588041	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	110588041	110588041	T	C	SNP	SYBU	ENST00000276646	human	ensembl	74_37	-1	known	missense	c.1086	p.I362M	0.856	NULL	NULL	-	no_errors	SYBU	HGNC	ENSG00000147642				119	0	0	127	7	5.22388
SYBU	0	genome.wustl.edu	37	8	110588192	110588192	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	110588192	110588192	T	A	SNP	SYBU	ENST00000276646	human	ensembl	74_37	-1	known	missense	c.935	p.D312V	1.000	NULL	NULL	-	no_errors	SYBU	HGNC	ENSG00000147642				95	0	0	127	7	5.22388
KCNV1	0	genome.wustl.edu	37	8	110984530	110984530	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	110984530	110984530	C	T	SNP	KCNV1	ENST00000297404	human	ensembl	74_37	-1	known	silent	c.948	p.L316	1.000	pfam_Ion_trans_dom,prints_K_chnl	pfam_T1-type_BTB,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv8,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv4	-	no_errors	KCNV1	HGNC	ENSG00000164794				54	0	0	68	9	11.6883
MTMR9	0	genome.wustl.edu	37	8	11167152	11167152	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	11167152	11167152	A	G	SNP	MTMR9	ENST00000221086	human	ensembl	74_37	+1	known	missense	c.926	p.K309R	1.000	NULL	pfam_Myotubularin-like_Pase_dom	-	no_errors	MTMR9	HGNC	ENSG00000104643				95	0	0	100	6	5.66038
SLC35G5	0	genome.wustl.edu	37	8	11189446	11189446	+	Silent	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	11189446	11189446	C	A	SNP	SLC35G5	ENST00000382435	human	ensembl	74_37	+1	known	silent	c.831	p.A277	0.999	pfam_DMT	pfam_DMT	-	no_errors	SLC35G5	HGNC	ENSG00000177710				148	1	0.671141	181	35	16.2037
CSMD3	0	genome.wustl.edu	37	8	113241000	113241000	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	113241000	113241000	T	G	SNP	CSMD3	ENST00000297405	human	ensembl	74_37	-1	known	missense	c.10949	p.Y3650S	1.000	NULL	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796				107	0	0	94	5	5.05051
CSMD3	0	genome.wustl.edu	37	8	113256732	113256732	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	113256732	113256732	C	T	SNP	CSMD3	ENST00000297405	human	ensembl	74_37	-1	known	silent	c.10293	p.G3431	0.993	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796				71	0	0	84	8	8.69565
CSMD3	0	genome.wustl.edu	37	8	113308208	113308208	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	113308208	113308208	A	T	SNP	CSMD3	ENST00000297405	human	ensembl	74_37	-1	known	missense	c.8468	p.I2823N	1.000	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796				70	0	0	58	6	9.375
CSMD3	0	genome.wustl.edu	37	8	113353786	113353786	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	113353786	113353786	A	G	SNP	CSMD3	ENST00000297405	human	ensembl	74_37	-1	known	missense	c.6572	p.F2191S	1.000	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796				94	0	0	111	8	6.72269
BLK	0	genome.wustl.edu	37	8	11414274	11414274	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	11414274	11414274	G	A	SNP	BLK	ENST00000259089	human	ensembl	74_37	+1	known	missense	c.880	p.E294K	0.443	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,prints_SH3_domain	-	no_errors	BLK	HGNC	ENSG00000136573				55	0	0	63	9	12.5
TRPS1	0	genome.wustl.edu	37	8	116631923	116631923	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	116631923	116631923	G	A	SNP	TRPS1	ENST00000395715	human	ensembl	74_37	-1	known	silent	c.402	p.V134	1.000	NULL	pfam_Znf_GATA,smart_Znf_C2H2-like,smart_Znf_GATA,pfscan_Znf_C2H2,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	TRPS1	HGNC	ENSG00000104447				101	0	0	118	8	6.34921
EIF3H	0	genome.wustl.edu	37	8	117658772	117658772	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	117658772	117658772	T	A	SNP	EIF3H	ENST00000521861	human	ensembl	74_37	-1	known	missense	c.899	p.D300V	1.000	NULL	pfam_JAB_MPN_dom,smart_JAB_MPN_dom	-	no_errors	EIF3H	HGNC	ENSG00000147677				225	1	0.442478	251	23	8.39416
AARD	0	genome.wustl.edu	37	8	117950578	117950578	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	117950578	117950578	C	T	SNP	AARD	ENST00000378279	human	ensembl	74_37	+1	known	silent	c.96	p.P32	0.000	NULL	NULL	-	no_errors	AARD	HGNC	ENSG00000205002				28	0	0	31	6	16.2162
DEFB135	0	genome.wustl.edu	37	8	11842018	11842018	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	11842018	11842018	C	T	SNP	DEFB135	ENST00000382208	human	ensembl	74_37	+1	known	silent	c.153	p.N51	0.000	NULL	NULL	-	no_errors	DEFB135	HGNC	ENSG00000205883				94	0	0	104	21	16.8
NOV	0	genome.wustl.edu	37	8	120431371	120431371	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	120431371	120431371	C	T	SNP	NOV	ENST00000259526	human	ensembl	74_37	+1	known	missense	c.563	p.A188V	1.000	pirsf_IGFBP_CNN	pfam_IGFBP-like,pfam_Cys_knot,pfam_VWF_C,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_IGFBP-like,smart_VWF_C,smart_Thrombospondin_1_rpt,smart_Cys_knot_C,pirsf_IGFBP_CNN,pfscan_Cys_knot_C,pfscan_Thrombospondin_1_rpt,pfscan_VWF_C	-	no_errors	NOV	HGNC	ENSG00000136999				62	0	0	84	7	7.69231
DSCC1	0	genome.wustl.edu	37	8	120847196	120847196	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	120847196	120847196	T	A	SNP	DSCC1	ENST00000313655	human	ensembl	74_37	-1	known	missense	c.1119	p.K373N	1.000	NULL	pfam_Sister_chromatid_cohesion_Dcc1	-	no_errors	DSCC1	HGNC	ENSG00000136982				112	0	0	110	7	5.98291
HAS2	0	genome.wustl.edu	37	8	122641366	122641366	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	122641366	122641366	T	C	SNP	HAS2	ENST00000303924	human	ensembl	74_37	-1	known	missense	c.215	p.K72R	0.999	NULL	pfam_Chitin_synth_fng	-	no_errors	HAS2	HGNC	ENSG00000170961				260	0	0	308	61	16.5312
TBC1D31	0	genome.wustl.edu	37	8	124153051	124153051	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	124153051	124153051	A	G	SNP	TBC1D31	ENST00000287380	human	ensembl	74_37	+1	known	silent	c.2550	p.A850	0.148	NULL	pfam_Rab-GTPase-TBC_dom,pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_Rab-GTPase-TBC_dom,smart_WD40_repeat,pfscan_Rab-GTPase-TBC_dom,pfscan_WD40_repeat_dom	-	no_errors	TBC1D31	HGNC	ENSG00000156787				151	0	0	136	10	6.84932
ZHX1-C8ORF76	0	genome.wustl.edu	37	8	124238719	124238719	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	124238719	124238719	A	G	SNP	ZHX1-C8ORF76	ENST00000357082	human	ensembl	74_37	-1	known	silent	c.873	p.F291	0.000	NULL	NULL	-	no_errors	ZHX1-C8ORF76	HGNC	ENSG00000259305				33	0	0	36	3	7.69231
KLHL38	0	genome.wustl.edu	37	8	124664667	124664667	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	124664667	124664667	G	A	SNP	KLHL38	ENST00000325995	human	ensembl	74_37	-1	known	missense	c.500	p.A167V	1.000	pfam_BACK,smart_BACK,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL38	HGNC	ENSG00000175946				72	0	0	119	14	10.5263
FAM91A1	0	genome.wustl.edu	37	8	124787521	124787521	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	124787521	124787521	T	C	SNP	FAM91A1	ENST00000334705	human	ensembl	74_37	+1	known	missense	c.292	p.Y98H	1.000	NULL	NULL	-	no_errors	FAM91A1	HGNC	ENSG00000176853				103	0	0	112	8	6.66667
RNF139	0	genome.wustl.edu	37	8	125498225	125498225	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	125498225	125498225	C	T	SNP	RNF139	ENST00000303545	human	ensembl	74_37	+1	known	missense	c.335	p.S112L	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF139	HGNC	ENSG00000170881				128	0	0	131	8	5.7554
MTSS1	0	genome.wustl.edu	37	8	125565432	125565432	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	125565432	125565432	A	T	SNP	MTSS1	ENST00000518547	human	ensembl	74_37	-1	known	missense	c.2069	p.I690N	0.067	NULL	pfam_IRSp53/MIM_homology_IMD,pfscan_WH2_dom	-	no_errors	MTSS1	HGNC	ENSG00000170873				220	0	0	329	19	5.45977
LONRF1	0	genome.wustl.edu	37	8	12598381	12598381	+	Splice_Site	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	12598381	12598381	A	T	SNP	LONRF1	ENST00000398246	human	ensembl	74_37	-1	known	splice_site	c.963+2	e3+2	1.000	-	-	-	no_errors	LONRF1	HGNC	ENSG00000154359				155	1	0.641026	192	13	6.34146
SQLE	0	genome.wustl.edu	37	8	126021568	126021568	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	126021568	126021568	T	A	SNP	SQLE	ENST00000265896	human	ensembl	74_37	+1	known	missense	c.1091	p.I364N	0.998	pfam_Squalene_epoxidase,pfam_mOase_FAD-bd	pfam_Squalene_epoxidase,pfam_mOase_FAD-bd,pfam_Pyr_OxRdtase_NAD-bd_dom,prints_Rng_hydrolase-like	-	no_errors	SQLE	HGNC	ENSG00000104549				64	0	0	49	10	16.9492
KIAA0196	0	genome.wustl.edu	37	8	126088714	126088714	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	126088714	126088714	C	T	SNP	KIAA0196	ENST00000318410	human	ensembl	74_37	-1	known	missense	c.740	p.R247H	1.000	pfam_WASH_strumpellin	pfam_WASH_strumpellin,superfamily_Ig_E-set	-	no_errors	KIAA0196	HGNC	ENSG00000164961				74	0	0	89	10	10.101
FAM84B	0	genome.wustl.edu	37	8	127569021	127569021	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	127569021	127569021	G	C	SNP	FAM84B	ENST00000304916	human	ensembl	74_37	-1	known	missense	c.614	p.A205G	1.000	pfam_LRAT-like_dom	pfam_LRAT-like_dom	-	no_errors	FAM84B	HGNC	ENSG00000168672				16	0	0	20	2	9.09091
FAM84B	0	genome.wustl.edu	37	8	127569528	127569528	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	127569528	127569528	T	C	SNP	FAM84B	ENST00000304916	human	ensembl	74_37	-1	known	missense	c.107	p.Y36C	1.000	NULL	pfam_LRAT-like_dom	-	no_errors	FAM84B	HGNC	ENSG00000168672				26	0	0	42	3	6.66667
POU5F1B	0	genome.wustl.edu	37	8	128428863	128428863	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	128428863	128428863	A	G	SNP	POU5F1B	ENST00000391675	human	ensembl	74_37	+1	known	missense	c.752	p.Q251R	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_POU_specific,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_POU_specific,prints_POU	-	no_errors	POU5F1B	HGNC	ENSG00000212993				19	0	0	10	4	28.5714
MYC	0	genome.wustl.edu	37	8	128750987	128750987	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	128750987	128750987	G	A	SNP	MYC	ENST00000377970	human	ensembl	74_37	+1	known	missense	c.524	p.G175D	0.985	pfam_Tscrpt_reg_Myc_N	pfam_Tscrpt_reg_Myc_N,pfam_Myc-LZ,pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom,prints_Tscrpt_reg_Myc	-	no_errors	MYC	HGNC	ENSG00000136997				40	0	0	53	4	7.01754
DLC1	0	genome.wustl.edu	37	8	12957440	12957440	+	Silent	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	12957440	12957440	T	G	SNP	DLC1	ENST00000276297	human	ensembl	74_37	-1	known	silent	c.2406	p.P802	0.573	NULL	pfam_START_lipid-bd_dom,pfam_RhoGAP_dom,pfam_SAM_2,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,smart_START_lipid-bd_dom,pfscan_START_lipid-bd_dom,pfscan_RhoGAP_dom	-	no_errors	DLC1	HGNC	ENSG00000164741				144	0	0	218	24	9.91736
GSDMC	0	genome.wustl.edu	37	8	130789814	130789814	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	130789814	130789814	C	T	SNP	GSDMC	ENST00000276708	human	ensembl	74_37	-1	known	missense	c.20	p.R7H	0.000	pfam_Gasdermin	pfam_Gasdermin	-	no_errors	GSDMC	HGNC	ENSG00000147697				134	0	0	157	10	5.98802
FAM49B	0	genome.wustl.edu	37	8	130866573	130866573	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	130866573	130866573	A	G	SNP	FAM49B	ENST00000401979	human	ensembl	74_37	-1	known	missense	c.455	p.I152T	1.000	pfam_DUF1394	pfam_DUF1394	-	no_errors	FAM49B	HGNC	ENSG00000153310				112	0	0	105	7	6.25
OC90	0	genome.wustl.edu	37	8	133036882	133036882	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	133036882	133036882	T	C	SNP	OC90	ENST00000443356	human	ensembl	74_37	-1	known	missense	c.1328	p.D443G	0.017	NULL	pfam_PLipase_A2_dom,superfamily_PLipase_A2_dom,smart_PLipase_A2_dom,prints_PLipase_A2	-	no_errors	OC90	Uniprot_gn	ENSG00000258417				21	0	0	42	3	6.66667
KCNQ3	0	genome.wustl.edu	37	8	133150238	133150238	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	133150238	133150238	T	C	SNP	KCNQ3	ENST00000388996	human	ensembl	74_37	-1	known	missense	c.1594	p.K532E	1.000	pfam_K_chnl_volt-dep_KCNQ_C	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ankyrin-G_BS,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl_volt-dep_KCNQ3,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ3	HGNC	ENSG00000184156				133	0	0	146	8	5.19481
KCNQ3	0	genome.wustl.edu	37	8	133196541	133196541	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	133196541	133196541	T	C	SNP	KCNQ3	ENST00000388996	human	ensembl	74_37	-1	known	missense	c.551	p.Y184C	1.000	pfam_Ion_trans_dom,prints_K_chnl_volt-dep_KCNQ	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ankyrin-G_BS,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl_volt-dep_KCNQ3,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ3	HGNC	ENSG00000184156				102	0	0	162	16	8.98876
KCNQ3	0	genome.wustl.edu	37	8	133492463	133492463	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	133492463	133492463	C	T	SNP	KCNQ3	ENST00000388996	human	ensembl	74_37	-1	known	missense	c.317	p.R106H	1.000	NULL	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ankyrin-G_BS,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl_volt-dep_KCNQ3,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ3	HGNC	ENSG00000184156				34	0	0	34	3	8.10811
DLC1	0	genome.wustl.edu	37	8	13357407	13357407	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	13357407	13357407	A	G	SNP	DLC1	ENST00000276297	human	ensembl	74_37	-1	known	silent	c.174	p.C58	0.986	NULL	pfam_START_lipid-bd_dom,pfam_RhoGAP_dom,pfam_SAM_2,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,smart_START_lipid-bd_dom,pfscan_START_lipid-bd_dom,pfscan_RhoGAP_dom	-	no_errors	DLC1	HGNC	ENSG00000164741				308	0	0	332	28	7.77778
DLC1	0	genome.wustl.edu	37	8	13357493	13357493	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	13357493	13357493	C	A	SNP	DLC1	ENST00000276297	human	ensembl	74_37	-1	known	missense	c.88	p.A30S	0.744	NULL	pfam_START_lipid-bd_dom,pfam_RhoGAP_dom,pfam_SAM_2,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,smart_START_lipid-bd_dom,pfscan_START_lipid-bd_dom,pfscan_RhoGAP_dom	-	no_errors	DLC1	HGNC	ENSG00000164741				157	0	0	173	13	6.98925
LRRC6	0	genome.wustl.edu	37	8	133645002	133645002	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	133645002	133645002	C	T	SNP	LRRC6	ENST00000250173	human	ensembl	74_37	-1	known	missense	c.637	p.D213N	0.008	NULL	superfamily_HSP20-like_chaperone,smart_U2A'_phosphoprotein32A_C,pfscan_CS_dom	-	no_errors	LRRC6	HGNC	ENSG00000129295				245	0	0	295	19	6.05096
PHF20L1	0	genome.wustl.edu	37	8	133837511	133837511	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	133837511	133837511	A	G	SNP	PHF20L1	ENST00000395386	human	ensembl	74_37	+1	putative	missense	c.1639	p.K547E	1.000	NULL	pfam_DUF3776,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Tudor,smart_Tudor-like_plant	-	no_errors	PHF20L1	HGNC	ENSG00000129292				51	0	0	64	4	5.88235
TG	0	genome.wustl.edu	37	8	133895214	133895214	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	133895214	133895214	A	G	SNP	TG	ENST00000220616	human	ensembl	74_37	+1	known	missense	c.1045	p.T349A	0.899	pfam_Thyroglobulin_1,superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,pirsf_Thyroglobulin,pfscan_Thyroglobulin_1	pfam_Thyroglobulin_1,pfam_CarbesteraseB,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,pirsf_Thyroglobulin,pfscan_Thyroglobulin_1	-	no_errors	TG	HGNC	ENSG00000042832				29	0	0	51	6	10.5263
SLA	0	genome.wustl.edu	37	8	134062229	134062229	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	134062229	134062229	C	T	SNP	SLA	ENST00000427060	human	ensembl	74_37	-1	known	missense	c.286	p.G96R	1.000	pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_SH2,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,pfscan_SH2,pfscan_SH3_domain,prints_SH2	-	no_errors	SLA	HGNC	ENSG00000155926				60	0	0	71	16	18.3908
NDRG1	0	genome.wustl.edu	37	8	134276877	134276877	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	134276877	134276877	A	C	SNP	NDRG1	ENST00000323851	human	ensembl	74_37	-1	known	missense	c.118	p.L40V	0.004	pfam_Ndr	pfam_Ndr	-	no_errors	NDRG1	HGNC	ENSG00000104419				89	0	0	123	9	6.81818
FAM135B	0	genome.wustl.edu	37	8	139180136	139180136	+	Splice_Site	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	139180136	139180136	A	C	SNP	FAM135B	ENST00000395297	human	ensembl	74_37	-1	known	splice_site	c.1258+2	e11+2	1.000	-	-	-	no_errors	FAM135B	HGNC	ENSG00000147724				124	0	0	150	14	8.53659
FAM135B	0	genome.wustl.edu	37	8	139278000	139278000	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	139278000	139278000	T	C	SNP	FAM135B	ENST00000395297	human	ensembl	74_37	-1	known	silent	c.243	p.V81	0.184	NULL	pfam_DUF676_lipase-like,pfam_DUF3657,pfam_PGAP1-like	-	no_errors	FAM135B	HGNC	ENSG00000147724				77	0	0	84	16	16
KCNK9	0	genome.wustl.edu	37	8	140715061	140715061	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	140715061	140715061	A	G	SNP	KCNK9	ENST00000303015	human	ensembl	74_37	-1	known	missense	c.175	p.Y59H	1.000	pirsf_2pore_dom_K_chnl_TASK,prints_KCNK9	pfam_2pore_dom_K_chnl_dom,pirsf_2pore_dom_K_chnl_TASK,prints_2pore_dom_K_chnl_TASK,prints_KCNK9,prints_2pore_dom_K_chnl	-	no_errors	KCNK9	HGNC	ENSG00000169427				32	0	0	50	4	7.40741
AGO2	0	genome.wustl.edu	37	8	141542676	141542676	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	141542676	141542676	G	A	SNP	AGO2	ENST00000220592	human	ensembl	74_37	-1	known	silent	c.2310	p.D770	0.998	pfam_Piwi,superfamily_RNaseH-like_dom,smart_Piwi,pfscan_Piwi	pfam_Piwi,pfam_PAZ_dom,pfam_DUF1785,superfamily_RNaseH-like_dom,superfamily_PAZ_dom,smart_PAZ_dom,smart_Piwi,pfscan_PAZ_dom,pfscan_Piwi	-	no_errors	AGO2	HGNC	ENSG00000123908				52	0	0	96	13	11.9266
AGO2	0	genome.wustl.edu	37	8	141551423	141551423	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	141551423	141551423	T	C	SNP	AGO2	ENST00000220592	human	ensembl	74_37	-1	known	missense	c.1874	p.Y625C	1.000	pfam_Piwi,superfamily_RNaseH-like_dom,smart_Piwi,pfscan_Piwi	pfam_Piwi,pfam_PAZ_dom,pfam_DUF1785,superfamily_RNaseH-like_dom,superfamily_PAZ_dom,smart_PAZ_dom,smart_Piwi,pfscan_PAZ_dom,pfscan_Piwi	-	no_errors	AGO2	HGNC	ENSG00000123908				32	0	0	63	4	5.97015
AGO2	0	genome.wustl.edu	37	8	141559224	141559224	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	141559224	141559224	G	A	SNP	AGO2	ENST00000220592	human	ensembl	74_37	-1	known	missense	c.1577	p.T526M	1.000	pfam_Piwi,superfamily_RNaseH-like_dom,smart_Piwi,pfscan_Piwi	pfam_Piwi,pfam_PAZ_dom,pfam_DUF1785,superfamily_RNaseH-like_dom,superfamily_PAZ_dom,smart_PAZ_dom,smart_Piwi,pfscan_PAZ_dom,pfscan_Piwi	-	no_errors	AGO2	HGNC	ENSG00000123908				35	0	0	33	5	13.1579
PTK2	0	genome.wustl.edu	37	8	141745491	141745491	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	141745491	141745491	T	C	SNP	PTK2	ENST00000395218	human	ensembl	74_37	-1	known	missense	c.1889	p.D630G	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Focal_adhesion_kin_target_dom,pfam_Prot_kinase_dom,pfam_FERM_central,superfamily_Kinase-like_dom,superfamily_Focal_adhesion_kin_target_dom,superfamily_FERM_central,smart_Band_41_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_FERM_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PTK2	HGNC	ENSG00000169398				101	0	0	114	6	5
PTK2	0	genome.wustl.edu	37	8	141889685	141889685	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	141889685	141889685	A	G	SNP	PTK2	ENST00000395218	human	ensembl	74_37	-1	known	missense	c.247	p.Y83H	1.000	smart_Band_41_domain,pfscan_FERM_domain	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Focal_adhesion_kin_target_dom,pfam_Prot_kinase_dom,pfam_FERM_central,superfamily_Kinase-like_dom,superfamily_Focal_adhesion_kin_target_dom,superfamily_FERM_central,smart_Band_41_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_FERM_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PTK2	HGNC	ENSG00000169398				274	0	0	383	22	5.4321
SLC45A4	0	genome.wustl.edu	37	8	142231844	142231844	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	142231844	142231844	T	C	SNP	SLC45A4	ENST00000517878	human	ensembl	74_37	-1	known	missense	c.262	p.S88G	1.000	superfamily_MFS_dom_general_subst_transpt	superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC45A4	HGNC	ENSG00000022567				64	0	0	99	8	7.47664
BAI1	0	genome.wustl.edu	37	8	143623370	143623370	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	143623370	143623370	C	T	SNP	BAI1	ENST00000323289	human	ensembl	74_37	+1	known	missense	c.3775	p.P1259S	0.544	NULL	pfam_GPCR_2_secretin-like,pfam_Thrombospondin_1_rpt,pfam_DUF3497,pfam_GPS_dom,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_GPCR_2_extracellular_dom,smart_GPS_dom,prints_GPCR_2_brain-spec_angio_inhib,prints_GPCR_2_secretin-like,pfscan_GPS_dom,pfscan_Thrombospondin_1_rpt,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like	-	no_errors	BAI1	HGNC	ENSG00000181790				16	0	0	12	4	25
ARC	0	genome.wustl.edu	37	8	143694743	143694743	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	143694743	143694743	G	A	SNP	ARC	ENST00000356613	human	ensembl	74_37	-1	known	missense	c.890	p.P297L	1.000	NULL	prints_Activity-reg_cytoskelet-assoc	-	no_errors	ARC	HGNC	ENSG00000198576				43	0	0	58	5	7.93651
ARC	0	genome.wustl.edu	37	8	143694953	143694953	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	143694953	143694953	T	C	SNP	ARC	ENST00000356613	human	ensembl	74_37	-1	known	missense	c.680	p.Y227C	1.000	prints_Activity-reg_cytoskelet-assoc	prints_Activity-reg_cytoskelet-assoc	-	no_errors	ARC	HGNC	ENSG00000198576				46	0	0	50	3	5.66038
CYP11B2	0	genome.wustl.edu	37	8	143994781	143994781	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	143994781	143994781	G	A	SNP	CYP11B2	ENST00000323110	human	ensembl	74_37	-1	known	silent	c.1041	p.A347	0.000	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_mitochondrial,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_B	-	no_errors	CYP11B2	HGNC	ENSG00000179142				87	0	0	120	17	12.4088
ZNF696	0	genome.wustl.edu	37	8	144378517	144378517	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	144378517	144378517	C	T	SNP	ZNF696	ENST00000330143	human	ensembl	74_37	+1	known	silent	c.672	p.A224	0.001	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF696	HGNC	ENSG00000185730				13	0	0	16	4	20
RHPN1	0	genome.wustl.edu	37	8	144462909	144462909	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	144462909	144462909	G	A	SNP	RHPN1	ENST00000289013	human	ensembl	74_37	+1	known	missense	c.1367	p.R456H	0.813	pfam_BRO1_dom,pfscan_BRO1_dom	pfam_BRO1_dom,pfam_HR1_rho-bd,pfam_PDZ,superfamily_PDZ,superfamily_HR1_rho-bd,smart_HR1_rho-bd,smart_PDZ,pfscan_BRO1_dom,pfscan_PDZ	-	no_errors	RHPN1	HGNC	ENSG00000158106				8	0	0	15	4	21.0526
ZC3H3	0	genome.wustl.edu	37	8	144620360	144620360	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	144620360	144620360	G	A	SNP	ZC3H3	ENST00000262577	human	ensembl	74_37	-1	known	missense	c.1177	p.R393C	0.994	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H3	HGNC	ENSG00000014164				101	0	0	160	10	5.88235
TSTA3	0	genome.wustl.edu	37	8	144696501	144696501	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	144696501	144696501	T	C	SNP	TSTA3	ENST00000425753	human	ensembl	74_37	-1	known	missense	c.587	p.H196R	1.000	pfam_Epimerase_deHydtase	pfam_Epimerase_deHydtase,pfam_dTDP_dehydrorham_reduct	-	no_errors	TSTA3	HGNC	ENSG00000104522				62	0	0	105	7	6.25
ZNF623	0	genome.wustl.edu	37	8	144732976	144732976	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	144732976	144732976	A	T	SNP	ZNF623	ENST00000501748	human	ensembl	74_37	+1	known	missense	c.934	p.I312F	0.050	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF623	HGNC	ENSG00000183309				87	0	0	98	6	5.76923
MAPK15	0	genome.wustl.edu	37	8	144804314	144804314	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	144804314	144804314	G	A	SNP	MAPK15	ENST00000338033	human	ensembl	74_37	+1	known	missense	c.1528	p.A510T	0.999	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAPK15	HGNC	ENSG00000181085				92	0	0	143	9	5.92105
SCRIB	0	genome.wustl.edu	37	8	144874878	144874878	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	144874878	144874878	C	T	SNP	SCRIB	ENST00000320476	human	ensembl	74_37	-1	known	missense	c.4177	p.A1393T	1.000	NULL	pfam_PDZ,pfam_Leu-rich_rpt,superfamily_PDZ,smart_Leu-rich_rpt_typical-subtyp,smart_PDZ,pfscan_PDZ	-	no_errors	SCRIB	HGNC	ENSG00000180900				11	0	0	20	3	13.0435
SCRIB	0	genome.wustl.edu	37	8	144877663	144877663	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	144877663	144877663	C	T	SNP	SCRIB	ENST00000320476	human	ensembl	74_37	-1	known	missense	c.3641	p.G1214D	0.751	NULL	pfam_PDZ,pfam_Leu-rich_rpt,superfamily_PDZ,smart_Leu-rich_rpt_typical-subtyp,smart_PDZ,pfscan_PDZ	-	no_errors	SCRIB	HGNC	ENSG00000180900				20	0	0	33	6	15.3846
PUF60	0	genome.wustl.edu	37	8	144898884	144898884	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	144898884	144898884	C	T	SNP	PUF60	ENST00000526683	human	ensembl	74_37	-1	known	missense	c.1486	p.V496I	1.000	smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom,tigrfam_PolyU-bd	-	no_errors	PUF60	HGNC	ENSG00000179950				234	0	0	297	33	10
PUF60	0	genome.wustl.edu	37	8	144899832	144899832	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	144899832	144899832	G	A	SNP	PUF60	ENST00000526683	human	ensembl	74_37	-1	known	missense	c.938	p.A313V	1.000	tigrfam_PolyU-bd	pfam_RRM_dom,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom,tigrfam_PolyU-bd	-	no_errors	PUF60	HGNC	ENSG00000179950				72	0	0	99	6	5.71429
PUF60	0	genome.wustl.edu	37	8	144900179	144900179	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	144900179	144900179	C	T	SNP	PUF60	ENST00000526683	human	ensembl	74_37	-1	known	missense	c.670	p.A224T	0.998	tigrfam_PolyU-bd	pfam_RRM_dom,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom,tigrfam_PolyU-bd	-	no_errors	PUF60	HGNC	ENSG00000179950				46	0	0	53	4	7.01754
NRBP2	0	genome.wustl.edu	37	8	144920921	144920921	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	144920921	144920921	A	G	SNP	NRBP2	ENST00000327830	human	ensembl	74_37	-1	known	silent	c.42	p.N14	0.906	NULL	superfamily_Kinase-like_dom	-	no_errors	NRBP2	HGNC	ENSG00000185189				26	0	0	24	4	14.2857
EPPK1	0	genome.wustl.edu	37	8	144942445	144942445	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	144942445	144942445	C	T	SNP	EPPK1	ENST00000525985	human	ensembl	74_37	-1	known	silent	c.4977	p.Q1659	0.006	smart_Plectin_repeat	pfam_Plectin_repeat,smart_Plectin_repeat	-	no_errors	EPPK1	HGNC	ENSG00000227184				75	0	0	107	23	17.6923
PLEC	0	genome.wustl.edu	37	8	144991141	144991141	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	144991141	144991141	A	G	SNP	PLEC	ENST00000322810	human	ensembl	74_37	-1	known	missense	c.13259	p.I4420T	1.000	smart_Plectin_repeat	pfam_Plectin_repeat,pfam_CH-domain,pfam_S10_plectin_N,superfamily_CH-domain,superfamily_Chorismate_mutase_type_II,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,pfscan_CH-domain	-	no_errors	PLEC	HGNC	ENSG00000178209				50	0	0	77	7	8.33333
PLEC	0	genome.wustl.edu	37	8	144991345	144991345	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	144991345	144991345	T	C	SNP	PLEC	ENST00000322810	human	ensembl	74_37	-1	known	missense	c.13055	p.D4352G	1.000	smart_Plectin_repeat	pfam_Plectin_repeat,pfam_CH-domain,pfam_S10_plectin_N,superfamily_CH-domain,superfamily_Chorismate_mutase_type_II,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,pfscan_CH-domain	-	no_errors	PLEC	HGNC	ENSG00000178209				61	0	0	71	12	14.4578
PLEC	0	genome.wustl.edu	37	8	144993077	144993077	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	144993077	144993077	C	T	SNP	PLEC	ENST00000322810	human	ensembl	74_37	-1	known	missense	c.11323	p.A3775T	0.414	NULL	pfam_Plectin_repeat,pfam_CH-domain,pfam_S10_plectin_N,superfamily_CH-domain,superfamily_Chorismate_mutase_type_II,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,pfscan_CH-domain	-	no_errors	PLEC	HGNC	ENSG00000178209				101	0	0	157	11	6.54762
PLEC	0	genome.wustl.edu	37	8	144996247	144996247	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	144996247	144996247	C	T	SNP	PLEC	ENST00000322810	human	ensembl	74_37	-1	known	missense	c.8153	p.R2718Q	0.995	NULL	pfam_Plectin_repeat,pfam_CH-domain,pfam_S10_plectin_N,superfamily_CH-domain,superfamily_Chorismate_mutase_type_II,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,pfscan_CH-domain	-	no_errors	PLEC	HGNC	ENSG00000178209				12	0	0	18	4	18.1818
PLEC	0	genome.wustl.edu	37	8	145000981	145000981	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	145000981	145000981	C	A	SNP	PLEC	ENST00000322810	human	ensembl	74_37	-1	known	nonsense	c.4426	p.E1476*	0.999	smart_Spectrin/alpha-actinin	pfam_Plectin_repeat,pfam_CH-domain,pfam_S10_plectin_N,superfamily_CH-domain,superfamily_Chorismate_mutase_type_II,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,pfscan_CH-domain	-	no_errors	PLEC	HGNC	ENSG00000178209				89	0	0	144	13	8.28025
PARP10	0	genome.wustl.edu	37	8	145059959	145059959	+	Silent	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	145059959	145059959	A	C	SNP	PARP10	ENST00000313028	human	ensembl	74_37	-1	known	silent	c.366	p.P122	0.239	NULL	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP10	HGNC	ENSG00000178685				46	0	0	64	6	8.57143
GPAA1	0	genome.wustl.edu	37	8	145140934	145140934	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	145140934	145140934	A	G	SNP	GPAA1	ENST00000355091	human	ensembl	74_37	+1	known	missense	c.1772	p.E591G	0.998	pfam_Gaa1,pirsf_GPI_prot_transamidse_cplx_GAA1	pfam_Gaa1,pirsf_GPI_prot_transamidse_cplx_GAA1	-	no_errors	GPAA1	HGNC	ENSG00000197858				48	0	0	56	6	9.67742
SHARPIN	0	genome.wustl.edu	37	8	145154002	145154002	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	145154002	145154002	G	A	SNP	SHARPIN	ENST00000398712	human	ensembl	74_37	-1	known	silent	c.1029	p.S343	0.988	NULL	pfam_Znf_RanBP2,smart_Znf_RanBP2,pfscan_Znf_RanBP2	-	no_errors	SHARPIN	HGNC	ENSG00000179526				27	0	0	56	4	6.66667
MAF1	0	genome.wustl.edu	37	8	145161332	145161332	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	145161332	145161332	C	T	SNP	MAF1	ENST00000322428	human	ensembl	74_37	+1	known	silent	c.465	p.D155	0.727	pfam_Maf1,pirsf_Maf1	pfam_Maf1,pirsf_Maf1	-	no_errors	MAF1	HGNC	ENSG00000179632				29	0	0	51	5	8.92857
HSF1	0	genome.wustl.edu	37	8	145537516	145537516	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	145537516	145537516	G	A	SNP	HSF1	ENST00000528838	human	ensembl	74_37	+1	known	missense	c.1256	p.S419N	1.000	pfam_Vert_HSTF_C	pfam_Vert_HSTF_C,pfam_HSF_DNA-bd,smart_HSF_DNA-bd,prints_HSF_DNA-bd	-	no_errors	HSF1	HGNC	ENSG00000185122				34	0	0	57	4	6.55738
DGAT1	0	genome.wustl.edu	37	8	145542209	145542209	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	145542209	145542209	C	T	SNP	DGAT1	ENST00000332324	human	ensembl	74_37	-1	known	silent	c.489	p.A163	0.000	pfam_MBOAT_fam,superfamily_PEP-util_enz_mobile_dom	pfam_MBOAT_fam,superfamily_PEP-util_enz_mobile_dom	-	no_errors	DGAT1	HGNC	ENSG00000185000				21	0	0	34	7	17.0732
SCRT1	0	genome.wustl.edu	37	8	145557088	145557088	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	145557088	145557088	G	A	SNP	SCRT1	ENST00000332135	human	ensembl	74_37	-1	known	missense	c.806	p.S269L	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SCRT1	HGNC	ENSG00000170616				15	0	0	27	4	12.9032
SLC52A2	0	genome.wustl.edu	37	8	145582977	145582977	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	145582977	145582977	T	C	SNP	SLC52A2	ENST00000329994	human	ensembl	74_37	+1	known	silent	c.24	p.R8	0.000	NULL	pfam_Endogenous_retrovirus_rcpt	-	no_errors	SLC52A2	HGNC	ENSG00000185803				56	0	0	71	11	13.4146
CPSF1	0	genome.wustl.edu	37	8	145620557	145620557	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	145620557	145620557	G	A	SNP	CPSF1	ENST00000349769	human	ensembl	74_37	-1	known	missense	c.3110	p.A1037V	1.000	NULL	pfam_Cleavage/polyA-sp_fac_asu_C	-	no_errors	CPSF1	HGNC	ENSG00000071894				36	0	0	38	3	7.31707
CPSF1	0	genome.wustl.edu	37	8	145620666	145620666	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	145620666	145620666	T	C	SNP	CPSF1	ENST00000349769	human	ensembl	74_37	-1	known	missense	c.3080	p.Y1027C	1.000	NULL	pfam_Cleavage/polyA-sp_fac_asu_C	-	no_errors	CPSF1	HGNC	ENSG00000071894				50	0	0	58	4	6.45161
SLC39A4	0	genome.wustl.edu	37	8	145641443	145641443	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	145641443	145641443	G	A	SNP	SLC39A4	ENST00000301305	human	ensembl	74_37	-1	known	silent	c.225	p.G75	0.016	NULL	pfam_ZIP	-	no_errors	SLC39A4	HGNC	ENSG00000147804				17	0	0	41	5	10.8696
TONSL	0	genome.wustl.edu	37	8	145661146	145661146	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	145661146	145661146	T	C	SNP	TONSL	ENST00000409379	human	ensembl	74_37	-1	known	silent	c.2670	p.P890	0.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_TPR_repeat,smart_Ankyrin_rpt,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR-contain_dom,prints_Ankyrin_rpt	-	no_errors	TONSL	HGNC	ENSG00000160949				81	0	0	127	8	5.92593
TONSL	0	genome.wustl.edu	37	8	145664103	145664103	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	145664103	145664103	C	T	SNP	TONSL	ENST00000409379	human	ensembl	74_37	-1	known	missense	c.1496	p.G499D	0.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_TPR_repeat,smart_Ankyrin_rpt,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR-contain_dom,prints_Ankyrin_rpt	-	no_errors	TONSL	HGNC	ENSG00000160949				26	0	0	39	7	15.2174
TONSL	0	genome.wustl.edu	37	8	145665767	145665767	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	145665767	145665767	G	A	SNP	TONSL	ENST00000409379	human	ensembl	74_37	-1	known	silent	c.1257	p.S419	0.192	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_TPR_repeat,smart_Ankyrin_rpt,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR-contain_dom,prints_Ankyrin_rpt	-	no_errors	TONSL	HGNC	ENSG00000160949				49	0	0	71	6	7.79221
RECQL4	0	genome.wustl.edu	37	8	145741442	145741442	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	145741442	145741442	A	G	SNP	RECQL4	ENST00000428558	human	ensembl	74_37	-1	known	missense	c.1061	p.V354A	0.931	NULL	pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_DNA_rep_checkpnt_protein,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ	-	no_errors	RECQL4	HGNC	ENSG00000160957				62	0	0	109	6	5.21739
LRRC14	0	genome.wustl.edu	37	8	145745995	145745995	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	145745995	145745995	C	T	SNP	LRRC14	ENST00000292524	human	ensembl	74_37	+1	known	missense	c.703	p.R235C	0.099	NULL	NULL	-	no_errors	LRRC14	HGNC	ENSG00000160959				50	0	0	84	7	7.69231
LRRC24	0	genome.wustl.edu	37	8	145748589	145748589	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	145748589	145748589	G	C	SNP	LRRC24	ENST00000529415	human	ensembl	74_37	-1	known	missense	c.812	p.A271G	1.000	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LRRC24	HGNC	ENSG00000254402				12	0	0	16	2	11.1111
ZNF251	0	genome.wustl.edu	37	8	145947422	145947422	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	145947422	145947422	C	T	SNP	ZNF251	ENST00000292562	human	ensembl	74_37	-1	known	silent	c.1623	p.E541	0.523	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF251	HGNC	ENSG00000198169				122	0	0	162	12	6.89655
ZNF34	0	genome.wustl.edu	37	8	146003509	146003509	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	146003509	146003509	C	T	SNP	ZNF34	ENST00000343459	human	ensembl	74_37	-1	known	missense	c.137	p.R46Q	0.018	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF34	HGNC	ENSG00000196378				26	0	0	56	3	5.08475
ZNF34	0	genome.wustl.edu	37	8	146003824	146003824	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	146003824	146003824	C	A	SNP	ZNF34	ENST00000343459	human	ensembl	74_37	-1	known	missense	c.96	p.Q32H	0.985	superfamily_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF34	HGNC	ENSG00000196378				12	0	0	16	4	20
RPL8	0	genome.wustl.edu	37	8	146016676	146016676	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	146016676	146016676	T	C	SNP	RPL8	ENST00000262584	human	ensembl	74_37	-1	known	missense	c.485	p.N162S	1.000	pfam_Ribosomal_L2_C,superfamily_Translation_prot_SH3-like,pirsf_Ribosomal_L2	pfam_Ribosomal_L2_C,pfam_Rbsml_prot_L2_RNA-bd_dom,superfamily_Translation_prot_SH3-like,superfamily_NA-bd_OB-fold,pirsf_Ribosomal_L2	-	no_errors	RPL8	HGNC	ENSG00000161016				77	0	0	98	7	6.66667
RPL8	0	genome.wustl.edu	37	8	146017173	146017173	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	146017173	146017173	A	G	SNP	RPL8	ENST00000262584	human	ensembl	74_37	-1	known	missense	c.265	p.Y89H	1.000	pfam_Rbsml_prot_L2_RNA-bd_dom,superfamily_NA-bd_OB-fold,pirsf_Ribosomal_L2	pfam_Ribosomal_L2_C,pfam_Rbsml_prot_L2_RNA-bd_dom,superfamily_Translation_prot_SH3-like,superfamily_NA-bd_OB-fold,pirsf_Ribosomal_L2	-	no_errors	RPL8	HGNC	ENSG00000161016				116	0	0	161	12	6.93642
DLGAP2	0	genome.wustl.edu	37	8	1497551	1497551	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	1497551	1497551	C	T	SNP	DLGAP2	ENST00000421627	human	ensembl	74_37	+1	known	missense	c.692	p.T231M	0.181	NULL	pfam_GKAP	-	no_errors	DLGAP2	HGNC	ENSG00000198010				82	0	0	102	6	5.55556
DLGAP2	0	genome.wustl.edu	37	8	1497607	1497607	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	1497607	1497607	G	A	SNP	DLGAP2	ENST00000421627	human	ensembl	74_37	+1	known	missense	c.748	p.A250T	0.000	NULL	pfam_GKAP	-	no_errors	DLGAP2	HGNC	ENSG00000198010				96	0	0	131	13	9.02778
TUSC3	0	genome.wustl.edu	37	8	15480695	15480695	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	15480695	15480695	G	A	SNP	TUSC3	ENST00000503731	human	ensembl	74_37	+1	known	missense	c.245	p.R82Q	1.000	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	pfam_OligosaccharylTrfase_OST3/OST6,pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	-	no_errors	TUSC3	HGNC	ENSG00000104723				118	0	0	99	7	6.60377
MICU3	0	genome.wustl.edu	37	8	16884801	16884801	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	16884801	16884801	C	T	SNP	MICU3	ENST00000318063	human	ensembl	74_37	+1	known	nonsense	c.13	p.R5*	1.000	NULL	smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	MICU3	HGNC	ENSG00000155970				33	0	0	48	4	7.69231
MTMR7	0	genome.wustl.edu	37	8	17157398	17157398	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	17157398	17157398	A	G	SNP	MTMR7	ENST00000180173	human	ensembl	74_37	-1	known	silent	c.1956	p.S652	0.003	NULL	pfam_Myotubularin-like_Pase_dom,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase	-	no_errors	MTMR7	HGNC	ENSG00000003987				110	0	0	134	9	6.29371
MTMR7	0	genome.wustl.edu	37	8	17157468	17157468	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	17157468	17157468	T	A	SNP	MTMR7	ENST00000180173	human	ensembl	74_37	-1	known	missense	c.1886	p.D629V	0.998	NULL	pfam_Myotubularin-like_Pase_dom,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase	-	no_errors	MTMR7	HGNC	ENSG00000003987				85	0	0	109	7	6.03448
CLN8	0	genome.wustl.edu	37	8	1719553	1719553	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	1719553	1719553	G	A	SNP	CLN8	ENST00000331222	human	ensembl	74_37	+1	known	silent	c.333	p.T111	0.003	pfam_TLC-dom,smart_TLC-dom,pfscan_TLC-dom	pfam_TLC-dom,smart_TLC-dom,pfscan_TLC-dom	-	no_errors	CLN8	HGNC	ENSG00000182372				153	0	0	193	12	5.85366
MTMR7	0	genome.wustl.edu	37	8	17198974	17198974	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	17198974	17198974	G	A	SNP	MTMR7	ENST00000180173	human	ensembl	74_37	-1	known	silent	c.630	p.S210	0.020	pfam_Myotubularin-like_Pase_dom	pfam_Myotubularin-like_Pase_dom,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase	-	no_errors	MTMR7	HGNC	ENSG00000003987				56	0	0	80	10	11.1111
SLC7A2	0	genome.wustl.edu	37	8	17401121	17401121	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	17401121	17401121	C	T	SNP	SLC7A2	ENST00000004531	human	ensembl	74_37	+1	known	silent	c.393	p.A131	0.998	pfam_AA-permease/SLC12A_dom,tigrfam_Cat_AA_permease	pfam_AA-permease/SLC12A_dom,tigrfam_Cat_AA_permease	-	no_errors	SLC7A2	HGNC	ENSG00000003989				55	0	0	76	5	6.17284
MTUS1	0	genome.wustl.edu	37	8	17554837	17554837	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	17554837	17554837	G	A	SNP	MTUS1	ENST00000297488	human	ensembl	74_37	-1	known	missense	c.50	p.T17M	0.998	NULL	superfamily_Ferritin-like_SF	-	no_errors	MTUS1	HGNC	ENSG00000129422				199	2	0.995025	259	21	7.5
MTUS1	0	genome.wustl.edu	37	8	17579227	17579227	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	17579227	17579227	T	C	SNP	MTUS1	ENST00000381861	human	ensembl	74_37	-1	known	missense	c.184	p.K62E	1.000	NULL	superfamily_Ferritin-like_SF	-	no_errors	MTUS1	HGNC	ENSG00000129422				59	0	0	69	6	8
PCM1	0	genome.wustl.edu	37	8	17810589	17810589	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	17810589	17810589	C	T	SNP	PCM1	ENST00000325083	human	ensembl	74_37	+1	known	silent	c.1182	p.V394	0.361	NULL	NULL	-	no_errors	PCM1	HGNC	ENSG00000078674				26	0	0	22	9	29.0323
ARHGEF10	0	genome.wustl.edu	37	8	1828298	1828298	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	1828298	1828298	A	T	SNP	ARHGEF10	ENST00000398564	human	ensembl	74_37	+1	known	missense	c.1003	p.I335F	0.900	NULL	pfam_DH-domain,superfamily_DH-domain,superfamily_WD40_repeat_dom,smart_DH-domain,pfscan_DH-domain	-	no_errors	ARHGEF10	HGNC	ENSG00000104728				56	0	0	70	6	7.89474
ARHGEF10	0	genome.wustl.edu	37	8	1851564	1851564	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	1851564	1851564	C	T	SNP	ARHGEF10	ENST00000398564	human	ensembl	74_37	+1	known	missense	c.1843	p.R615C	1.000	superfamily_DH-domain	pfam_DH-domain,superfamily_DH-domain,superfamily_WD40_repeat_dom,smart_DH-domain,pfscan_DH-domain	-	no_errors	ARHGEF10	HGNC	ENSG00000104728				75	0	0	91	17	15.7407
ARHGEF10	0	genome.wustl.edu	37	8	1877548	1877548	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	1877548	1877548	G	A	SNP	ARHGEF10	ENST00000398564	human	ensembl	74_37	+1	known	silent	c.3093	p.T1031	0.000	superfamily_WD40_repeat_dom	pfam_DH-domain,superfamily_DH-domain,superfamily_WD40_repeat_dom,smart_DH-domain,pfscan_DH-domain	-	no_errors	ARHGEF10	HGNC	ENSG00000104728				133	0	0	161	9	5.29412
ARHGEF10	0	genome.wustl.edu	37	8	1904934	1904934	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	1904934	1904934	C	T	SNP	ARHGEF10	ENST00000398564	human	ensembl	74_37	+1	known	silent	c.3615	p.Y1205	1.000	NULL	pfam_DH-domain,superfamily_DH-domain,superfamily_WD40_repeat_dom,smart_DH-domain,pfscan_DH-domain	-	no_errors	ARHGEF10	HGNC	ENSG00000104728				66	0	0	103	7	6.36364
ZNF596	0	genome.wustl.edu	37	8	196313	196313	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	196313	196313	A	G	SNP	ZNF596	ENST00000308811	human	ensembl	74_37	+1	known	missense	c.1466	p.N489S	0.005	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF596	HGNC	ENSG00000172748				115	0	0	111	9	7.5
INTS10	0	genome.wustl.edu	37	8	19681411	19681411	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	19681411	19681411	C	T	SNP	INTS10	ENST00000397977	human	ensembl	74_37	+1	known	missense	c.692	p.S231L	1.000	NULL	NULL	-	no_errors	INTS10	HGNC	ENSG00000104613				95	0	0	118	7	5.6
MYOM2	0	genome.wustl.edu	37	8	2005502	2005502	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	2005502	2005502	G	T	SNP	MYOM2	ENST00000262113	human	ensembl	74_37	+1	known	missense	c.300	p.K100N	0.990	NULL	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	MYOM2	HGNC	ENSG00000036448				34	0	0	63	4	5.97015
LZTS1	0	genome.wustl.edu	37	8	20110461	20110461	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	20110461	20110461	C	T	SNP	LZTS1	ENST00000265801	human	ensembl	74_37	-1	known	silent	c.981	p.A327	0.000	NULL	NULL	-	no_errors	LZTS1	HGNC	ENSG00000061337				34	0	0	49	5	9.25926
MYOM2	0	genome.wustl.edu	37	8	2037899	2037899	+	Silent	SNP	C	C	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	2037899	2037899	C	G	SNP	MYOM2	ENST00000262113	human	ensembl	74_37	+1	known	silent	c.1713	p.A571	0.001	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	MYOM2	HGNC	ENSG00000036448				50	0	0	86	6	6.52174
FGF17	0	genome.wustl.edu	37	8	21903733	21903733	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	21903733	21903733	A	G	SNP	FGF17	ENST00000359441	human	ensembl	74_37	+1	known	missense	c.181	p.T61A	1.000	pfam_Fibroblast_GF_fam,superfamily_Cytokine_IL1-like,smart_Fibroblast_GF_fam	pfam_Fibroblast_GF_fam,superfamily_Cytokine_IL1-like,smart_Fibroblast_GF_fam,prints_IL-1_fam/FGF_fam	-	no_errors	FGF17	HGNC	ENSG00000158815				71	0	0	136	8	5.55556
HR	0	genome.wustl.edu	37	8	21976568	21976568	+	Silent	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	21976568	21976568	T	G	SNP	HR	ENST00000381418	human	ensembl	74_37	-1	known	silent	c.3108	p.S1036	0.775	smart_JmjC_dom,pfscan_JmjC_dom	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	HR	HGNC	ENSG00000168453				43	0	0	71	9	11.25
HR	0	genome.wustl.edu	37	8	21976797	21976797	+	Splice_Site	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	21976797	21976797	C	T	SNP	HR	ENST00000381418	human	ensembl	74_37	-1	known	splice_site	c.2978-1	e14-1	0.892	-	-	-	no_errors	HR	HGNC	ENSG00000168453				46	0	0	63	10	13.6986
REEP4	0	genome.wustl.edu	37	8	21996041	21996041	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	21996041	21996041	G	A	SNP	REEP4	ENST00000306306	human	ensembl	74_37	-1	known	missense	c.733	p.R245W	0.381	NULL	pfam_TB2_DP1_HVA22	-	no_errors	REEP4	HGNC	ENSG00000168476				67	0	0	123	7	5.38462
REEP4	0	genome.wustl.edu	37	8	21996183	21996183	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	21996183	21996183	C	T	SNP	REEP4	ENST00000306306	human	ensembl	74_37	-1	known	missense	c.677	p.R226H	0.903	NULL	pfam_TB2_DP1_HVA22	-	no_errors	REEP4	HGNC	ENSG00000168476				68	0	0	102	14	12.069
LGI3	0	genome.wustl.edu	37	8	22006022	22006022	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	22006022	22006022	C	T	SNP	LGI3	ENST00000306317	human	ensembl	74_37	-1	known	missense	c.1298	p.R433H	0.585	pfam_EPTP,pfscan_EAR	pfam_EPTP,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_EAR	-	no_errors	LGI3	HGNC	ENSG00000168481				26	0	0	35	8	18.6047
LGI3	0	genome.wustl.edu	37	8	22012934	22012934	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	22012934	22012934	C	T	SNP	LGI3	ENST00000518365	human	ensembl	74_37	-1	known	missense	c.295	p.V99I	0.062	NULL	NULL	-	no_errors	LGI3	HGNC	ENSG00000168481				123	0	0	157	40	20.3046
SFTPC	0	genome.wustl.edu	37	8	22020985	22020985	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	22020985	22020985	T	C	SNP	SFTPC	ENST00000318561	human	ensembl	74_37	+1	known	missense	c.361	p.C121R	1.000	pfam_BRICHOS_dom,smart_Pulm_surfact_AP,pfscan_BRICHOS_dom	pfam_Surfactant_protein_propep,pfam_BRICHOS_dom,smart_Pulm_surfact_AP,pfscan_BRICHOS_dom	-	no_errors	SFTPC	HGNC	ENSG00000168484				58	0	0	91	5	5.20833
POLR3D	0	genome.wustl.edu	37	8	22105428	22105428	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	22105428	22105428	C	T	SNP	POLR3D	ENST00000397802	human	ensembl	74_37	+1	known	nonsense	c.268	p.R90*	1.000	NULL	pfam_RPC4	-	no_errors	POLR3D	HGNC	ENSG00000168495				56	0	0	97	15	13.3929
SLC39A14	0	genome.wustl.edu	37	8	22262401	22262401	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	22262401	22262401	C	T	SNP	SLC39A14	ENST00000359741	human	ensembl	74_37	+1	known	nonsense	c.178	p.Q60*	1.000	NULL	pfam_ZIP	-	no_errors	SLC39A14	HGNC	ENSG00000104635				64	0	0	108	8	6.89655
RHOBTB2	0	genome.wustl.edu	37	8	22864590	22864590	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	22864590	22864590	A	G	SNP	RHOBTB2	ENST00000251822	human	ensembl	74_37	+1	known	missense	c.832	p.I278V	1.000	superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_BTB_POZ,pfam_Small_GTPase,pfam_MIRO-like,superfamily_P-loop_NTPase,superfamily_BTB/POZ_fold,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_BTB/POZ-like,pfscan_BTB/POZ-like,prints_Small_GTPase	-	no_errors	RHOBTB2	HGNC	ENSG00000008853				105	0	0	162	11	6.35838
TNFRSF10B	0	genome.wustl.edu	37	8	22881771	22881771	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	22881771	22881771	T	A	SNP	TNFRSF10B	ENST00000276431	human	ensembl	74_37	-1	known	missense	c.939	p.E313D	0.002	pirsf_TNFR_10	pirsf_TNFR_10,pfam_Death_domain,pfam_TNFR/NGFR_Cys_rich_reg,superfamily_DEATH-like_dom,smart_TNFR/NGFR_Cys_rich_reg,smart_Death_domain,prints_TNFR_10,pfscan_Death_domain,pfscan_TNFR/NGFR_Cys_rich_reg	-	no_errors	TNFRSF10B	HGNC	ENSG00000120889				93	0	0	130	14	9.72222
TNFRSF10C	0	genome.wustl.edu	37	8	22969324	22969324	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	22969324	22969324	A	G	SNP	TNFRSF10C	ENST00000356864	human	ensembl	74_37	+1	known	missense	c.152	p.E51G	0.001	NULL	pfam_TNFR/NGFR_Cys_rich_reg,smart_TNFR/NGFR_Cys_rich_reg,pfscan_TNFR/NGFR_Cys_rich_reg,prints_TNFR_10	-	no_errors	TNFRSF10C	HGNC	ENSG00000173535				36	0	0	46	4	8
LOXL2	0	genome.wustl.edu	37	8	23155621	23155621	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	23155621	23155621	C	T	SNP	LOXL2	ENST00000389131	human	ensembl	74_37	-1	known	missense	c.2260	p.E754K	1.000	NULL	pfam_Lysyl_oxidase,pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR,prints_Lysyl_oxidase,prints_SRCR	-	no_errors	LOXL2	HGNC	ENSG00000134013				49	0	0	87	17	16.3462
LOXL2	0	genome.wustl.edu	37	8	23167310	23167310	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	23167310	23167310	G	A	SNP	LOXL2	ENST00000389131	human	ensembl	74_37	-1	known	missense	c.1751	p.A584V	1.000	pfam_Lysyl_oxidase	pfam_Lysyl_oxidase,pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR,prints_Lysyl_oxidase,prints_SRCR	-	no_errors	LOXL2	HGNC	ENSG00000134013				41	0	0	46	5	9.80392
LOXL2	0	genome.wustl.edu	37	8	23177441	23177441	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	23177441	23177441	A	G	SNP	LOXL2	ENST00000389131	human	ensembl	74_37	-1	known	missense	c.1427	p.V476A	1.000	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR	pfam_Lysyl_oxidase,pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR,prints_Lysyl_oxidase,prints_SRCR	-	no_errors	LOXL2	HGNC	ENSG00000134013				52	0	0	72	12	14.2857
LOXL2	0	genome.wustl.edu	37	8	23198524	23198524	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	23198524	23198524	A	G	SNP	LOXL2	ENST00000389131	human	ensembl	74_37	-1	known	missense	c.724	p.Y242H	0.991	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR	pfam_Lysyl_oxidase,pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR,prints_Lysyl_oxidase,prints_SRCR	-	no_errors	LOXL2	HGNC	ENSG00000134013				97	0	0	124	20	13.8889
NKX3-1	0	genome.wustl.edu	37	8	23538760	23538760	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	23538760	23538760	C	G	SNP	NKX3-1	ENST00000380871	human	ensembl	74_37	-1	known	missense	c.679	p.G227R	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	NKX3-1	HGNC	ENSG00000167034				70	0	0	113	8	6.61157
ADAM28	0	genome.wustl.edu	37	8	24200626	24200626	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	24200626	24200626	G	A	SNP	ADAM28	ENST00000265769	human	ensembl	74_37	+1	known	missense	c.1843	p.A615T	1.000	smart_ADAM_Cys-rich	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM28	HGNC	ENSG00000042980				87	0	0	82	11	11.828
ADAM7	0	genome.wustl.edu	37	8	24356804	24356804	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	24356804	24356804	G	A	SNP	ADAM7	ENST00000175238	human	ensembl	74_37	+1	known	missense	c.1898	p.C633Y	0.872	NULL	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM7	HGNC	ENSG00000069206				57	0	0	61	6	8.95522
NEFM	0	genome.wustl.edu	37	8	24771921	24771921	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	24771921	24771921	G	A	SNP	NEFM	ENST00000221166	human	ensembl	74_37	+1	known	silent	c.615	p.A205	1.000	pfam_IF,prints_Keratin_I	pfam_IF,pfam_Intermed_filament_DNA-bd,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	NEFM	HGNC	ENSG00000104722				29	0	0	39	9	18.75
NEFM	0	genome.wustl.edu	37	8	24772257	24772257	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	24772257	24772257	C	T	SNP	NEFM	ENST00000221166	human	ensembl	74_37	+1	known	silent	c.951	p.I317	1.000	pfam_IF	pfam_IF,pfam_Intermed_filament_DNA-bd,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	NEFM	HGNC	ENSG00000104722				25	0	0	27	3	10
DOCK5	0	genome.wustl.edu	37	8	25203086	25203086	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	25203086	25203086	C	A	SNP	DOCK5	ENST00000276440	human	ensembl	74_37	+1	known	missense	c.2713	p.L905I	1.000	superfamily_ARM-type_fold	pfam_DOCK_C,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK5	HGNC	ENSG00000147459				113	1	0.877193	149	12	7.45342
CDCA2	0	genome.wustl.edu	37	8	25317936	25317936	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	25317936	25317936	T	C	SNP	CDCA2	ENST00000330560	human	ensembl	74_37	+1	known	missense	c.98	p.V33A	0.002	NULL	NULL	-	no_errors	CDCA2	HGNC	ENSG00000184661				314	0	0	363	23	5.95855
EBF2	0	genome.wustl.edu	37	8	25718615	25718615	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	25718615	25718615	C	T	SNP	EBF2	ENST00000520164	human	ensembl	74_37	-1	known	missense	c.1292	p.G431D	1.000	NULL	pfam_IPT,superfamily_Ig_E-set,smart_IPT	-	no_errors	EBF2	HGNC	ENSG00000221818				131	0	0	175	16	8.37696
PPP2R2A	0	genome.wustl.edu	37	8	26220238	26220238	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	26220238	26220238	A	C	SNP	PPP2R2A	ENST00000380737	human	ensembl	74_37	+1	known	missense	c.676	p.T226P	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_PP2A_PR55,prints_PP2A_PR55	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_PP2A_PR55,prints_PP2A_PR55	-	no_errors	PPP2R2A	HGNC	ENSG00000221914				65	0	0	63	7	10
PPP2R2A	0	genome.wustl.edu	37	8	26227921	26227921	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	26227921	26227921	G	A	SNP	PPP2R2A	ENST00000380737	human	ensembl	74_37	+1	known	missense	c.1336	p.V446M	1.000	pirsf_PP2A_PR55	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_PP2A_PR55,prints_PP2A_PR55	-	no_errors	PPP2R2A	HGNC	ENSG00000221914				70	0	0	82	5	5.74713
SDAD1P1	0	genome.wustl.edu	37	8	26238433	26238433	+	RNA	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	26238433	26238433	G	A	SNP	SDAD1P1	ENST00000519902	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SDAD1P1	HGNC	ENSG00000228451				118	0	0	117	19	13.9706
DPYSL2	0	genome.wustl.edu	37	8	26505247	26505247	+	Silent	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	26505247	26505247	A	T	SNP	DPYSL2	ENST00000311151	human	ensembl	74_37	+1	known	silent	c.1212	p.G404	0.997	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	-	no_errors	DPYSL2	HGNC	ENSG00000092964				75	0	0	105	8	7.07965
STMN4	0	genome.wustl.edu	37	8	27097663	27097663	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	27097663	27097663	A	G	SNP	STMN4	ENST00000350889	human	ensembl	74_37	-1	known	missense	c.416	p.L139P	1.000	pfam_Stathmin_fam,superfamily_Stathmin_fam,pirsf_Stathmin_fam,prints_Stathmin_fam	pfam_Stathmin_fam,superfamily_Stathmin_fam,pirsf_Stathmin_fam,prints_Stathmin_fam	-	no_errors	STMN4	HGNC	ENSG00000015592				90	0	0	115	7	5.7377
CLU	0	genome.wustl.edu	37	8	27457490	27457490	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	27457490	27457490	C	T	SNP	CLU	ENST00000560366	human	ensembl	74_37	-1	known	missense	c.1127	p.R376Q	0.993	pfam_Clusterin-like,smart_Clusterin_C	pfam_Clusterin-like,smart_Clusterin_N,smart_Clusterin_C	-	no_errors	CLU	HGNC	ENSG00000120885				57	0	0	60	19	24.0506
SCARA3	0	genome.wustl.edu	37	8	27516928	27516928	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	27516928	27516928	G	A	SNP	SCARA3	ENST00000301904	human	ensembl	74_37	+1	known	missense	c.1241	p.R414Q	0.993	NULL	pfam_Collagen	-	no_errors	SCARA3	HGNC	ENSG00000168077				21	0	0	30	7	18.9189
ESCO2	0	genome.wustl.edu	37	8	27650265	27650265	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	27650265	27650265	T	C	SNP	ESCO2	ENST00000305188	human	ensembl	74_37	+1	known	silent	c.1434	p.T478	0.953	NULL	NULL	-	no_errors	ESCO2	HGNC	ENSG00000171320				78	0	0	81	10	10.989
PBK	0	genome.wustl.edu	37	8	27680702	27680702	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	27680702	27680702	T	C	SNP	PBK	ENST00000301905	human	ensembl	74_37	-1	known	missense	c.173	p.H58R	0.996	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	PBK	HGNC	ENSG00000168078				109	0	0	109	7	6.03448
SCARA5	0	genome.wustl.edu	37	8	27764677	27764677	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	27764677	27764677	G	A	SNP	SCARA5	ENST00000354914	human	ensembl	74_37	-1	known	missense	c.1084	p.R362C	1.000	pfam_Collagen	pfam_SRCR,pfam_Collagen,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,prints_SRCR,pfscan_SRCR	-	no_errors	SCARA5	HGNC	ENSG00000168079				104	1	0.952381	144	27	15.7895
ELP3	0	genome.wustl.edu	37	8	28017959	28017959	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	28017959	28017959	A	G	SNP	ELP3	ENST00000256398	human	ensembl	74_37	+1	known	missense	c.1471	p.K491E	1.000	pfam_GNAT_dom,superfamily_Acyl_CoA_acyltransferase,pirsf_Hist_AcTrfase_ELP3,pfscan_GNAT_dom,tigrfam_Hist_AcTrfase_ELP3	pfam_rSAM,pfam_GNAT_dom,superfamily_Acyl_CoA_acyltransferase,smart_Elp3/MiaB/NifB,pirsf_Hist_AcTrfase_ELP3,pfscan_GNAT_dom,tigrfam_Hist_AcTrfase_ELP3	-	no_errors	ELP3	HGNC	ENSG00000134014				45	0	0	47	3	6
ELP3	0	genome.wustl.edu	37	8	28019591	28019591	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	28019591	28019591	A	G	SNP	ELP3	ENST00000256398	human	ensembl	74_37	+1	known	missense	c.1563	p.I521M	1.000	pfam_GNAT_dom,superfamily_Acyl_CoA_acyltransferase,pirsf_Hist_AcTrfase_ELP3,pfscan_GNAT_dom,tigrfam_Hist_AcTrfase_ELP3	pfam_rSAM,pfam_GNAT_dom,superfamily_Acyl_CoA_acyltransferase,smart_Elp3/MiaB/NifB,pirsf_Hist_AcTrfase_ELP3,pfscan_GNAT_dom,tigrfam_Hist_AcTrfase_ELP3	-	no_errors	ELP3	HGNC	ENSG00000134014				75	0	0	126	9	6.66667
ZNF395	0	genome.wustl.edu	37	8	28210108	28210108	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	28210108	28210108	A	T	SNP	ZNF395	ENST00000344423	human	ensembl	74_37	-1	known	missense	c.902	p.V301D	1.000	pfscan_Znf_C2H2	pfscan_Znf_C2H2	-	no_errors	ZNF395	HGNC	ENSG00000186918				92	0	0	114	8	6.55738
CSMD1	0	genome.wustl.edu	37	8	2830724	2830724	+	Nonsense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	2830724	2830724	A	T	SNP	CSMD1	ENST00000520002	human	ensembl	74_37	-1	known	nonsense	c.8841	p.C2947*	0.997	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD1	HGNC	ENSG00000183117				129	0	0	209	27	11.4407
EXTL3	0	genome.wustl.edu	37	8	28608394	28608394	+	RNA	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	28608394	28608394	C	T	SNP	EXTL3	ENST00000520679	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	EXTL3	HGNC	ENSG00000012232				48	0	0	55	21	27.6316
KIF13B	0	genome.wustl.edu	37	8	29025093	29025093	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	29025093	29025093	C	T	SNP	KIF13B	ENST00000524189	human	ensembl	74_37	-1	known	missense	c.955	p.G319R	1.000	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_CAP-Gly_domain,pfam_KIF1B,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_CAP-Gly_domain,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,pfscan_CAP-Gly_domain,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF13B	HGNC	ENSG00000197892				142	0	0	172	25	12.6904
CSMD1	0	genome.wustl.edu	37	8	3038700	3038700	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	3038700	3038700	T	C	SNP	CSMD1	ENST00000520002	human	ensembl	74_37	-1	known	missense	c.5660	p.N1887S	1.000	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD1	HGNC	ENSG00000183117				56	0	0	41	3	6.81818
RBPMS	0	genome.wustl.edu	37	8	30416475	30416475	+	Splice_Site	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	30416475	30416475	T	C	SNP	RBPMS	ENST00000287771	human	ensembl	74_37	+1	known	splice_site	c.615+2	e8+2	0.998	-	-	-	no_errors	RBPMS	HGNC	ENSG00000157110				76	0	0	89	6	6.31579
GTF2E2	0	genome.wustl.edu	37	8	30436555	30436555	+	Splice_Site	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	30436555	30436555	C	A	SNP	GTF2E2	ENST00000355904	human	ensembl	74_37	-1	known	splice_site	c.760-1	e7-1	1.000	-	-	-	no_errors	GTF2E2	HGNC	ENSG00000197265				141	0	0	205	11	5.09259
GTF2E2	0	genome.wustl.edu	37	8	30510971	30510971	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	30510971	30510971	A	G	SNP	GTF2E2	ENST00000355904	human	ensembl	74_37	-1	known	missense	c.145	p.S49P	1.000	pirsf_TFIIE-bsu	pfam_TFIIE_bsu_DNA-bd,pirsf_TFIIE-bsu	-	no_errors	GTF2E2	HGNC	ENSG00000197265				217	0	0	219	29	11.6935
TEX15	0	genome.wustl.edu	37	8	30695219	30695219	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	30695219	30695219	G	A	SNP	TEX15	ENST00000256246	human	ensembl	74_37	-1	known	nonsense	c.7432	p.Q2478*	0.006	NULL	NULL	-	no_errors	TEX15	HGNC	ENSG00000133863				163	0	0	171	35	16.9903
TEX15	0	genome.wustl.edu	37	8	30702154	30702154	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	30702154	30702154	T	C	SNP	TEX15	ENST00000256246	human	ensembl	74_37	-1	known	missense	c.4380	p.I1460M	0.046	NULL	NULL	-	no_errors	TEX15	HGNC	ENSG00000133863				91	0	0	114	6	5
TEX15	0	genome.wustl.edu	37	8	30704392	30704392	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	30704392	30704392	C	A	SNP	TEX15	ENST00000256246	human	ensembl	74_37	-1	known	missense	c.2142	p.K714N	1.000	NULL	NULL	-	no_errors	TEX15	HGNC	ENSG00000133863				136	0	0	143	9	5.92105
TEX15	0	genome.wustl.edu	37	8	30704541	30704541	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	30704541	30704541	C	T	SNP	TEX15	ENST00000256246	human	ensembl	74_37	-1	known	missense	c.1993	p.E665K	0.778	NULL	NULL	-	no_errors	TEX15	HGNC	ENSG00000133863				88	0	0	96	6	5.88235
TEX15	0	genome.wustl.edu	37	8	30704620	30704620	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	30704620	30704620	T	C	SNP	TEX15	ENST00000256246	human	ensembl	74_37	-1	known	silent	c.1914	p.L638	0.000	NULL	NULL	-	no_errors	TEX15	HGNC	ENSG00000133863				100	0	0	83	14	14.433
PURG	0	genome.wustl.edu	37	8	30889514	30889514	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	30889514	30889514	G	A	SNP	PURG	ENST00000475541	human	ensembl	74_37	-1	known	missense	c.785	p.P262L	1.000	pfam_PUR_DNA_RNA-bd,smart_PUR_DNA_RNA-bd	pfam_PUR_DNA_RNA-bd,smart_PUR_DNA_RNA-bd	-	no_errors	PURG	HGNC	ENSG00000172733				104	0	0	127	8	5.92593
WRN	0	genome.wustl.edu	37	8	30933738	30933738	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	30933738	30933738	T	C	SNP	WRN	ENST00000298139	human	ensembl	74_37	+1	known	silent	c.774	p.S258	0.838	NULL	pfam_3'-5'_exonuclease_dom,pfam_Helicase_C,pfam_RQC_domain,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_HRDC_dom,superfamily_P-loop_NTPase,superfamily_RNaseH-like_dom,superfamily_HRDC-like,smart_3'-5'_exonuclease_dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_RQC_domain,smart_HRDC_dom,pfscan_HRDC_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ	-	no_errors	WRN	HGNC	ENSG00000165392				129	0	0	150	10	6.25
WRN	0	genome.wustl.edu	37	8	31007893	31007893	+	Silent	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	31007893	31007893	T	G	SNP	WRN	ENST00000298139	human	ensembl	74_37	+1	known	silent	c.3609	p.G1203	1.000	pfam_HRDC_dom,superfamily_HRDC-like,smart_HRDC_dom,pfscan_HRDC_dom	pfam_3'-5'_exonuclease_dom,pfam_Helicase_C,pfam_RQC_domain,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_HRDC_dom,superfamily_P-loop_NTPase,superfamily_RNaseH-like_dom,superfamily_HRDC-like,smart_3'-5'_exonuclease_dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_RQC_domain,smart_HRDC_dom,pfscan_HRDC_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ	-	no_errors	WRN	HGNC	ENSG00000165392				87	0	0	93	10	9.70874
CSMD1	0	genome.wustl.edu	37	8	3165968	3165968	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	3165968	3165968	C	T	SNP	CSMD1	ENST00000520002	human	ensembl	74_37	-1	known	missense	c.3692	p.R1231H	0.960	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD1	HGNC	ENSG00000183117				34	0	0	36	7	16.2791
NRG1	0	genome.wustl.edu	37	8	32621679	32621679	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	32621679	32621679	A	C	SNP	NRG1	ENST00000338921	human	ensembl	74_37	+1	known	missense	c.1706	p.E569A	1.000	pfam_Neuregulin_1_C	pfam_Neuregulin_1_C,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Ig-like_dom,prints_Neuregulin	-	no_errors	NRG1	HGNC	ENSG00000157168				47	0	0	59	13	18.0556
FUT10	0	genome.wustl.edu	37	8	33246774	33246774	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	33246774	33246774	C	T	SNP	FUT10	ENST00000327671	human	ensembl	74_37	-1	known	missense	c.919	p.G307R	1.000	pfam_Glyco_trans_10,pirsf_Alpha-1_3-FUT_met	pfam_Glyco_trans_10,pirsf_Alpha-1_3-FUT_met	-	no_errors	FUT10	HGNC	ENSG00000172728				34	0	0	54	3	5.26316
FUT10	0	genome.wustl.edu	37	8	33246847	33246847	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	33246847	33246847	A	G	SNP	FUT10	ENST00000327671	human	ensembl	74_37	-1	known	silent	c.846	p.N282	0.946	pfam_Glyco_trans_10,pirsf_Alpha-1_3-FUT_met	pfam_Glyco_trans_10,pirsf_Alpha-1_3-FUT_met	-	no_errors	FUT10	HGNC	ENSG00000172728				66	0	0	85	6	6.59341
TTI2	0	genome.wustl.edu	37	8	33369888	33369888	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	33369888	33369888	G	T	SNP	TTI2	ENST00000360742	human	ensembl	74_37	-1	known	missense	c.244	p.L82M	0.967	NULL	pfam_DUF2454,superfamily_ARM-type_fold	-	no_errors	TTI2	HGNC	ENSG00000129696				84	0	0	123	9	6.81818
CSMD1	0	genome.wustl.edu	37	8	3474301	3474301	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	3474301	3474301	G	A	SNP	CSMD1	ENST00000520002	human	ensembl	74_37	-1	known	missense	c.1028	p.A343V	0.168	NULL	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD1	HGNC	ENSG00000183117				53	0	0	49	5	9.25926
KCNU1	0	genome.wustl.edu	37	8	36644837	36644837	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	36644837	36644837	C	T	SNP	KCNU1	ENST00000399881	human	ensembl	74_37	+1	known	missense	c.209	p.S70L	0.000	NULL	pfam_K_chnl_Ca-activ_BK_asu,pfam_2pore_dom_K_chnl_dom,prints_K_chnl_Ca-activ_BK_asu	-	no_errors	KCNU1	HGNC	ENSG00000215262				36	0	0	27	5	15.625
ZNF703	0	genome.wustl.edu	37	8	37556065	37556065	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	37556065	37556065	G	A	SNP	ZNF703	ENST00000331569	human	ensembl	74_37	+1	known	missense	c.1646	p.G549D	1.000	NULL	pfam_Tscrpt_rep_NocA-like,pfscan_Znf_C2H2	-	no_errors	ZNF703	HGNC	ENSG00000183779				28	0	0	42	3	6.66667
BRF2	0	genome.wustl.edu	37	8	37704490	37704490	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	37704490	37704490	T	G	SNP	BRF2	ENST00000220659	human	ensembl	74_37	-1	known	missense	c.418	p.T140P	0.999	superfamily_Cyclin-like	pfam_Znf_TFIIB,superfamily_Cyclin-like,pfscan_Znf_TFIIB	-	no_errors	BRF2	HGNC	ENSG00000104221				213	1	0.46729	373	34	8.35381
RAB11FIP1	0	genome.wustl.edu	37	8	37729405	37729405	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	37729405	37729405	A	T	SNP	RAB11FIP1	ENST00000330843	human	ensembl	74_37	-1	known	missense	c.2915	p.I972K	0.006	NULL	pfam_Rab-bd_FIP-RBD,pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	RAB11FIP1	HGNC	ENSG00000156675				136	0	0	195	11	5.33981
RAB11FIP1	0	genome.wustl.edu	37	8	37734665	37734665	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	37734665	37734665	T	A	SNP	RAB11FIP1	ENST00000330843	human	ensembl	74_37	-1	known	missense	c.776	p.E259V	0.906	NULL	pfam_Rab-bd_FIP-RBD,pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	RAB11FIP1	HGNC	ENSG00000156675				78	0	0	112	7	5.88235
EIF4EBP1	0	genome.wustl.edu	37	8	37914780	37914780	+	Splice_Site	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	37914780	37914780	T	C	SNP	EIF4EBP1	ENST00000338825	human	ensembl	74_37	+1	known	splice_site	c.325+2	e2+2	1.000	-	-	-	no_errors	EIF4EBP1	HGNC	ENSG00000187840				38	0	0	70	6	7.89474
ASH2L	0	genome.wustl.edu	37	8	37964605	37964605	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	37964605	37964605	C	T	SNP	ASH2L	ENST00000343823	human	ensembl	74_37	+1	known	nonsense	c.322	p.R108*	1.000	NULL	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	-	no_errors	ASH2L	HGNC	ENSG00000129691				77	0	0	62	8	11.4286
STAR	0	genome.wustl.edu	37	8	38005720	38005720	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	38005720	38005720	G	A	SNP	STAR	ENST00000276449	human	ensembl	74_37	-1	known	nonsense	c.304	p.Q102*	0.949	pfam_START_lipid-bd_dom,smart_START_lipid-bd_dom,pfscan_START_lipid-bd_dom	pfam_START_lipid-bd_dom,smart_START_lipid-bd_dom,pfscan_START_lipid-bd_dom,prints_StAR	-	no_errors	STAR	HGNC	ENSG00000147465				37	0	0	50	5	9.09091
DDHD2	0	genome.wustl.edu	37	8	38103772	38103772	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	38103772	38103772	T	A	SNP	DDHD2	ENST00000397166	human	ensembl	74_37	+1	known	missense	c.1079	p.I360N	1.000	NULL	pfam_DDHD,pfam_WWE-dom,pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_DDHD,pfscan_WWE-dom	-	no_errors	DDHD2	HGNC	ENSG00000085788				157	1	0.632911	176	11	5.88235
WHSC1L1	0	genome.wustl.edu	37	8	38189055	38189055	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	38189055	38189055	G	A	SNP	WHSC1L1	ENST00000317025	human	ensembl	74_37	-1	known	missense	c.959	p.A320V	0.998	pfam_PWWP_dom,smart_PWWP_dom,pfscan_PWWP_dom	pfam_PWWP_dom,pfam_SET_dom,superfamily_Znf_FYVE_PHD,smart_PWWP_dom,smart_Znf_PHD,smart_AWS,smart_SET_dom,smart_Post-SET_dom,pfscan_AWS,pfscan_PWWP_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger	-	no_errors	WHSC1L1	HGNC	ENSG00000147548				71	0	0	100	19	15.9664
LETM2	0	genome.wustl.edu	37	8	38264558	38264558	+	Splice_Site	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	38264558	38264558	T	C	SNP	LETM2	ENST00000379957	human	ensembl	74_37	+1	known	splice_site	c.1311+2	e8+2	0.987	-	-	-	no_errors	LETM2	HGNC	ENSG00000165046				88	0	0	74	8	9.7561
FGFR1	0	genome.wustl.edu	37	8	38279324	38279324	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	38279324	38279324	C	T	SNP	FGFR1	ENST00000425967	human	ensembl	74_37	-1	known	missense	c.1165	p.V389I	1.000	pirsf_FGF_rcpt_fam,pfam_Ig_I-set,smart_Ig_sub	pirsf_FGF_rcpt_fam,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	FGFR1	HGNC	ENSG00000077782				76	0	0	112	18	13.8462
ADAM18	0	genome.wustl.edu	37	8	39495122	39495122	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	39495122	39495122	A	T	SNP	ADAM18	ENST00000265707	human	ensembl	74_37	+1	known	missense	c.727	p.I243F	0.966	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B	-	no_errors	ADAM18	HGNC	ENSG00000168619				73	0	0	81	6	6.89655
ADAM18	0	genome.wustl.edu	37	8	39525578	39525578	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	39525578	39525578	A	T	SNP	ADAM18	ENST00000265707	human	ensembl	74_37	+1	known	missense	c.1388	p.Y463F	1.000	pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,pfscan_Blood-coag_inhib_Disintegrin	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B	-	no_errors	ADAM18	HGNC	ENSG00000168619				152	0	0	168	13	7.18232
ADAM2	0	genome.wustl.edu	37	8	39644522	39644522	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	39644522	39644522	C	T	SNP	ADAM2	ENST00000265708	human	ensembl	74_37	-1	known	missense	c.862	p.D288N	0.996	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM2	HGNC	ENSG00000104755				100	0	0	83	5	5.68182
SFRP1	0	genome.wustl.edu	37	8	41122885	41122885	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	41122885	41122885	T	C	SNP	SFRP1	ENST00000220772	human	ensembl	74_37	-1	known	missense	c.746	p.Y249C	1.000	pfam_Netrin_module_non-TIMP,superfamily_TIMP-like_OB-fold,smart_Netrin_module_non-TIMP,pfscan_Netrin_domain	pfam_Frizzled_dom,pfam_Netrin_module_non-TIMP,superfamily_Frizzled_dom,superfamily_TIMP-like_OB-fold,smart_Frizzled_dom,smart_Netrin_module_non-TIMP,pfscan_Frizzled_dom,pfscan_Netrin_domain	-	no_errors	SFRP1	HGNC	ENSG00000104332				105	0	0	113	8	6.61157
AGPAT6	0	genome.wustl.edu	37	8	41469463	41469463	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	41469463	41469463	A	G	SNP	AGPAT6	ENST00000396987	human	ensembl	74_37	+1	known	missense	c.653	p.Y218C	1.000	NULL	pfam_Plipid/glycerol_acylTrfase,smart_Plipid/glycerol_acylTrfase	-	no_errors	AGPAT6	HGNC	ENSG00000158669				55	0	0	59	5	7.8125
ANK1	0	genome.wustl.edu	37	8	41577192	41577192	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	41577192	41577192	T	G	SNP	ANK1	ENST00000396942	human	ensembl	74_37	-1	known	missense	c.1094	p.N365T	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,smart_Ankyrin_rpt,smart_ZU5,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK1	HGNC	ENSG00000029534				140	0	0	224	13	5.48523
ANK1	0	genome.wustl.edu	37	8	41581127	41581127	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	41581127	41581127	C	T	SNP	ANK1	ENST00000396942	human	ensembl	74_37	-1	known	missense	c.736	p.A246T	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,smart_Ankyrin_rpt,smart_ZU5,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK1	HGNC	ENSG00000029534				60	0	0	89	5	5.31915
AP3M2	0	genome.wustl.edu	37	8	42023011	42023011	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	42023011	42023011	C	T	SNP	AP3M2	ENST00000174653	human	ensembl	74_37	+1	known	missense	c.736	p.R246C	1.000	pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C,pirsf_Clathrin_mu,pfscan_Clathrin_mu_C,prints_Clathrin_mu	pfam_Clathrin_mu_C,pfam_AP_mu_sigma_su,superfamily_Clathrin_mu_C,superfamily_Longin-like_dom,pirsf_Clathrin_mu,pfscan_Clathrin_mu_C,prints_Clathrin_mu	-	no_errors	AP3M2	HGNC	ENSG00000070718				209	0	0	244	17	6.51341
AP3M2	0	genome.wustl.edu	37	8	42025322	42025322	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	42025322	42025322	A	G	SNP	AP3M2	ENST00000174653	human	ensembl	74_37	+1	known	missense	c.1150	p.I384V	1.000	pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C,pirsf_Clathrin_mu,pfscan_Clathrin_mu_C	pfam_Clathrin_mu_C,pfam_AP_mu_sigma_su,superfamily_Clathrin_mu_C,superfamily_Longin-like_dom,pirsf_Clathrin_mu,pfscan_Clathrin_mu_C,prints_Clathrin_mu	-	no_errors	AP3M2	HGNC	ENSG00000070718				198	0	0	191	27	12.3853
SMIM19	0	genome.wustl.edu	37	8	42401751	42401751	+	Splice_Site	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	42401751	42401751	T	C	SNP	SMIM19	ENST00000414154	human	ensembl	74_37	+1	known	splice_site	c.134+2	e1+2	1.000	-	-	-	no_errors	SMIM19	HGNC	ENSG00000176209				87	0	0	107	6	5.30973
POMK	0	genome.wustl.edu	37	8	42977574	42977574	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	42977574	42977574	T	A	SNP	POMK	ENST00000331373	human	ensembl	74_37	+1	known	missense	c.607	p.C203S	1.000	superfamily_Kinase-like_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,pfscan_Prot_kinase_dom	-	no_errors	POMK	HGNC	ENSG00000185900				48	0	0	47	3	6
POTEA	0	genome.wustl.edu	37	8	43147761	43147761	+	RNA	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	43147761	43147761	C	A	SNP	POTEA	ENST00000522175	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	POTEA	HGNC	ENSG00000188877				70	0	0	119	9	7.03125
TDRP	0	genome.wustl.edu	37	8	442651	442651	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	442651	442651	T	G	SNP	TDRP	ENST00000427263	human	ensembl	74_37	-1	known	missense	c.306	p.K102N	0.960	NULL	NULL	-	no_errors	TDRP	HGNC	ENSG00000180190				112	0	0	126	8	5.97015
SPIDR	0	genome.wustl.edu	37	8	48309037	48309037	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	48309037	48309037	C	T	SNP	SPIDR	ENST00000297423	human	ensembl	74_37	+1	known	silent	c.627	p.H209	0.000	NULL	NULL	-	no_errors	SPIDR	HGNC	ENSG00000164808				156	0	0	165	19	10.3261
SPIDR	0	genome.wustl.edu	37	8	48613001	48613001	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	48613001	48613001	G	A	SNP	SPIDR	ENST00000297423	human	ensembl	74_37	+1	known	nonsense	c.1722	p.W574*	1.000	NULL	NULL	-	no_errors	SPIDR	HGNC	ENSG00000164808				147	0	0	170	12	6.59341
SPIDR	0	genome.wustl.edu	37	8	48647993	48647993	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	48647993	48647993	G	A	SNP	SPIDR	ENST00000297423	human	ensembl	74_37	+1	known	missense	c.2729	p.G910E	0.000	NULL	NULL	-	no_errors	SPIDR	HGNC	ENSG00000164808				73	0	0	108	7	6.08696
PRKDC	0	genome.wustl.edu	37	8	48689516	48689516	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	48689516	48689516	C	T	SNP	PRKDC	ENST00000314191	human	ensembl	74_37	-1	known	missense	c.12068	p.G4023E	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_NUC194,pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PRKDC	HGNC	ENSG00000253729				146	1	0.680272	124	15	10.7914
PRKDC	0	genome.wustl.edu	37	8	48748958	48748958	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	48748958	48748958	A	G	SNP	PRKDC	ENST00000314191	human	ensembl	74_37	-1	known	missense	c.7889	p.V2630A	0.000	NULL	pfam_NUC194,pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PRKDC	HGNC	ENSG00000253729				22	0	0	29	3	9.375
PRKDC	0	genome.wustl.edu	37	8	48855917	48855917	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	48855917	48855917	C	T	SNP	PRKDC	ENST00000314191	human	ensembl	74_37	-1	known	missense	c.818	p.R273H	0.075	superfamily_ARM-type_fold	pfam_NUC194,pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PRKDC	HGNC	ENSG00000253729				26	0	0	31	3	8.82353
EFCAB1	0	genome.wustl.edu	37	8	49643102	49643102	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	49643102	49643102	T	C	SNP	EFCAB1	ENST00000262103	human	ensembl	74_37	-1	known	missense	c.316	p.K106E	1.000	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom,prints_Recoverin	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom,prints_Recoverin	-	no_errors	EFCAB1	HGNC	ENSG00000034239				49	0	0	39	9	18.75
SNAI2	0	genome.wustl.edu	37	8	49832964	49832964	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	49832964	49832964	A	G	SNP	SNAI2	ENST00000020945	human	ensembl	74_37	-1	known	missense	c.116	p.M39T	0.993	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SNAI2	HGNC	ENSG00000019549				193	0	0	227	13	5.41667
SNTG1	0	genome.wustl.edu	37	8	51415351	51415351	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	51415351	51415351	G	T	SNP	SNTG1	ENST00000518864	human	ensembl	74_37	+1	known	missense	c.377	p.R126L	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology	-	no_errors	SNTG1	HGNC	ENSG00000147481				81	0	0	62	8	11.4286
PXDNL	0	genome.wustl.edu	37	8	52321321	52321321	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	52321321	52321321	G	T	SNP	PXDNL	ENST00000356297	human	ensembl	74_37	-1	known	missense	c.2863	p.L955M	0.997	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,prints_Haem_peroxidase_animal_subgr,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like_dom	-	no_errors	PXDNL	HGNC	ENSG00000147485				8	0	0	20	3	13.0435
PXDNL	0	genome.wustl.edu	37	8	52321557	52321557	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	52321557	52321557	G	A	SNP	PXDNL	ENST00000356297	human	ensembl	74_37	-1	known	missense	c.2627	p.A876V	0.971	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like_dom	-	no_errors	PXDNL	HGNC	ENSG00000147485				55	0	0	64	5	7.24638
PXDNL	0	genome.wustl.edu	37	8	52321906	52321906	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	52321906	52321906	C	T	SNP	PXDNL	ENST00000356297	human	ensembl	74_37	-1	known	missense	c.2278	p.G760S	0.992	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,prints_Haem_peroxidase_animal_subgr,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like_dom	-	no_errors	PXDNL	HGNC	ENSG00000147485				9	0	0	8	4	33.3333
ST18	0	genome.wustl.edu	37	8	53084434	53084434	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	53084434	53084434	C	A	SNP	ST18	ENST00000276480	human	ensembl	74_37	-1	known	missense	c.987	p.R329S	0.996	NULL	pfam_Myelin_TF,pfam_Znf_C2HC	-	no_errors	ST18	HGNC	ENSG00000147488				133	0	0	139	20	12.5786
ST18	0	genome.wustl.edu	37	8	53084924	53084924	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	53084924	53084924	T	A	SNP	ST18	ENST00000276480	human	ensembl	74_37	-1	known	missense	c.497	p.E166V	0.949	NULL	pfam_Myelin_TF,pfam_Znf_C2HC	-	no_errors	ST18	HGNC	ENSG00000147488				132	0	0	116	22	15.942
RB1CC1	0	genome.wustl.edu	37	8	53569953	53569953	+	Silent	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	53569953	53569953	T	A	SNP	RB1CC1	ENST00000025008	human	ensembl	74_37	-1	known	silent	c.2436	p.I812	0.983	NULL	pfam_Autophagy-rel_p11	-	no_errors	RB1CC1	HGNC	ENSG00000023287				161	0	0	168	9	5.08475
NPBWR1	0	genome.wustl.edu	37	8	53853261	53853261	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	53853261	53853261	C	T	SNP	NPBWR1	ENST00000331251	human	ensembl	74_37	+1	known	missense	c.794	p.T265M	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Neuropept_B/W_rcpt,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Neuropept_B/W_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt,prints_Opioid_rcpt	-	no_errors	NPBWR1	HGNC	ENSG00000183729				29	0	0	40	8	16.6667
OPRK1	0	genome.wustl.edu	37	8	54142295	54142295	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	54142295	54142295	G	A	SNP	OPRK1	ENST00000265572	human	ensembl	74_37	-1	known	silent	c.705	p.F235	0.952	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srx,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srx,prints_Kappa_opi_rcpt,prints_GPCR_Rhodpsn,prints_Opioid_rcpt,prints_Neuropept_B/W_rcpt,prints_Somatstn_rcpt,prints_NPY_rcpt,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OPRK1	HGNC	ENSG00000082556				81	0	0	77	14	15.3846
OPRK1	0	genome.wustl.edu	37	8	54163422	54163422	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	54163422	54163422	G	A	SNP	OPRK1	ENST00000265572	human	ensembl	74_37	-1	known	missense	c.176	p.P59L	1.000	prints_Kappa_opi_rcpt,prints_Somatstn_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srx,prints_Kappa_opi_rcpt,prints_GPCR_Rhodpsn,prints_Opioid_rcpt,prints_Neuropept_B/W_rcpt,prints_Somatstn_rcpt,prints_NPY_rcpt,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OPRK1	HGNC	ENSG00000082556				27	0	0	31	4	11.4286
ATP6V1H	0	genome.wustl.edu	37	8	54708265	54708265	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	54708265	54708265	T	A	SNP	ATP6V1H	ENST00000359530	human	ensembl	74_37	-1	known	missense	c.812	p.D271V	1.000	pfam_ATPase_V1-cplx_hsu,superfamily_ARM-type_fold,pirsf_ATPase_V1-cplx_hsu	pfam_ATPase_V1-cplx_hsu,pfam_ATPase_V1-cplx_hsu_C,superfamily_ARM-type_fold,pirsf_ATPase_V1-cplx_hsu	-	no_errors	ATP6V1H	HGNC	ENSG00000047249				166	0	0	183	14	7.1066
ATP6V1H	0	genome.wustl.edu	37	8	54708289	54708289	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	54708289	54708289	T	C	SNP	ATP6V1H	ENST00000359530	human	ensembl	74_37	-1	known	missense	c.788	p.Y263C	1.000	pfam_ATPase_V1-cplx_hsu,superfamily_ARM-type_fold,pirsf_ATPase_V1-cplx_hsu	pfam_ATPase_V1-cplx_hsu,pfam_ATPase_V1-cplx_hsu_C,superfamily_ARM-type_fold,pirsf_ATPase_V1-cplx_hsu	-	no_errors	ATP6V1H	HGNC	ENSG00000047249				147	1	0.675676	160	29	15.3439
TCEA1	0	genome.wustl.edu	37	8	54891698	54891698	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	54891698	54891698	T	C	SNP	TCEA1	ENST00000521604	human	ensembl	74_37	-1	known	missense	c.712	p.K238E	1.000	pfam_TFIIS_cen_dom,smart_TFS2M,pirsf_TF_IIS-rel,tigrfam_TFSII	pfam_TFIIS_cen_dom,pfam_Znf_TFIIS,pfam_TFIIS_N,superfamily_TFIIS_cen_dom,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub,smart_TFS2M,smart_Znf_TFIIS,pirsf_TF_IIS-rel,pfscan_Znf_TFIIS,tigrfam_TFSII	-	no_errors	TCEA1	HGNC	ENSG00000187735				155	0	0	164	9	5.20231
RP1	0	genome.wustl.edu	37	8	55533931	55533931	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	55533931	55533931	G	A	SNP	RP1	ENST00000220676	human	ensembl	74_37	+1	known	silent	c.405	p.A135	0.040	NULL	pfam_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1	HGNC	ENSG00000104237				59	0	0	104	7	6.30631
RP1	0	genome.wustl.edu	37	8	55534123	55534123	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	55534123	55534123	C	T	SNP	RP1	ENST00000220676	human	ensembl	74_37	+1	known	silent	c.597	p.Y199	0.762	pfam_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	pfam_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1	HGNC	ENSG00000104237				126	0	0	150	12	7.40741
XKR4	0	genome.wustl.edu	37	8	56015541	56015541	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	56015541	56015541	C	T	SNP	XKR4	ENST00000327381	human	ensembl	74_37	+1	known	missense	c.493	p.R165C	1.000	pfam_Transport_prot_XK	pfam_Transport_prot_XK	-	no_errors	XKR4	HGNC	ENSG00000206579				43	0	0	57	14	19.7183
LYN	0	genome.wustl.edu	37	8	56863306	56863306	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	56863306	56863306	T	C	SNP	LYN	ENST00000519728	human	ensembl	74_37	+1	known	silent	c.450	p.A150	0.002	pfam_SH2,smart_SH2,pfscan_SH2,prints_SH2	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,prints_SH3_domain	-	no_errors	LYN	HGNC	ENSG00000254087				194	0	0	207	23	10
LYN	0	genome.wustl.edu	37	8	56910922	56910922	+	Silent	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	56910922	56910922	A	T	SNP	LYN	ENST00000519728	human	ensembl	74_37	+1	known	silent	c.1068	p.A356	0.042	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,prints_SH3_domain	-	no_errors	LYN	HGNC	ENSG00000254087				61	0	0	70	4	5.40541
LYN	0	genome.wustl.edu	37	8	56922616	56922616	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	56922616	56922616	G	A	SNP	LYN	ENST00000519728	human	ensembl	74_37	+1	known	missense	c.1486	p.V496I	0.987	pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,prints_SH3_domain	-	no_errors	LYN	HGNC	ENSG00000254087				98	0	0	114	26	18.5714
MOS	0	genome.wustl.edu	37	8	57026295	57026295	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	57026295	57026295	G	A	SNP	MOS	ENST00000311923	human	ensembl	74_37	-1	known	missense	c.247	p.P83S	0.139	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MOS	HGNC	ENSG00000172680				114	0	0	162	15	8.47458
PLAG1	0	genome.wustl.edu	37	8	57079567	57079567	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	57079567	57079567	T	G	SNP	PLAG1	ENST00000316981	human	ensembl	74_37	-1	known	missense	c.738	p.E246D	0.998	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	PLAG1	HGNC	ENSG00000181690				209	0	0	259	19	6.83453
CHCHD7	0	genome.wustl.edu	37	8	57129004	57129004	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	57129004	57129004	T	C	SNP	CHCHD7	ENST00000303759	human	ensembl	74_37	+1	known	missense	c.142	p.S48P	1.000	superfamily_Cys_alpha_HP_mot_SF,pfscan_Ricin_B_lectin	superfamily_Cys_alpha_HP_mot_SF,pfscan_Ricin_B_lectin	-	no_errors	CHCHD7	HGNC	ENSG00000170791				61	0	0	79	7	8.13953
SDR16C5	0	genome.wustl.edu	37	8	57218238	57218238	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	57218238	57218238	C	G	SNP	SDR16C5	ENST00000303749	human	ensembl	74_37	-1	known	missense	c.754	p.E252Q	0.000	NULL	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	SDR16C5	HGNC	ENSG00000170786				93	0	0	99	8	7.47664
SDCBP	0	genome.wustl.edu	37	8	59493089	59493089	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	59493089	59493089	C	T	SNP	SDCBP	ENST00000260130	human	ensembl	74_37	+1	known	missense	c.764	p.A255V	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SDCBP	HGNC	ENSG00000137575				70	0	0	73	9	10.9756
NSMAF	0	genome.wustl.edu	37	8	59506822	59506822	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	59506822	59506822	G	A	SNP	NSMAF	ENST00000427130	human	ensembl	74_37	-1	known	silent	c.2013	p.R671	0.968	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_BEACH_dom,pfam_WD40_repeat,pfam_GRAM,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,smart_GRAM,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NSMAF	HGNC	ENSG00000035681				94	0	0	79	19	19.3878
NSMAF	0	genome.wustl.edu	37	8	59515915	59515915	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	59515915	59515915	C	T	SNP	NSMAF	ENST00000427130	human	ensembl	74_37	-1	known	missense	c.992	p.S331N	1.000	superfamily_BEACH_dom,pfscan_BEACH_dom	pfam_BEACH_dom,pfam_WD40_repeat,pfam_GRAM,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,smart_GRAM,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NSMAF	HGNC	ENSG00000035681				82	0	0	101	7	6.48148
ERICH1	0	genome.wustl.edu	37	8	614628	614628	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	614628	614628	A	T	SNP	ERICH1	ENST00000262109	human	ensembl	74_37	-1	known	missense	c.1307	p.I436N	0.962	NULL	NULL	-	no_errors	ERICH1	HGNC	ENSG00000104714				153	0	0	147	10	6.36943
CHD7	0	genome.wustl.edu	37	8	61743114	61743114	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	61743114	61743114	C	T	SNP	CHD7	ENST00000423902	human	ensembl	74_37	+1	known	silent	c.3756	p.C1252	1.000	pfam_SNF2_N,superfamily_P-loop_NTPase	pfam_SNF2_N,pfam_BRK_domain,pfam_Chromo_domain,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD7	HGNC	ENSG00000171316				102	0	0	115	25	17.8571
CHD7	0	genome.wustl.edu	37	8	61764653	61764653	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	61764653	61764653	G	A	SNP	CHD7	ENST00000423902	human	ensembl	74_37	+1	known	missense	c.5741	p.R1914H	1.000	NULL	pfam_SNF2_N,pfam_BRK_domain,pfam_Chromo_domain,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD7	HGNC	ENSG00000171316				48	0	0	48	8	14.2857
MCPH1	0	genome.wustl.edu	37	8	6302609	6302609	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	6302609	6302609	T	A	SNP	MCPH1	ENST00000344683	human	ensembl	74_37	+1	known	missense	c.1366	p.F456I	0.001	pfam_Microcephalin	pfam_Microcephalin,pfam_BRCT_dom,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom,prints_BRCA1	-	no_errors	MCPH1	HGNC	ENSG00000147316				95	0	0	129	10	7.19424
YTHDF3	0	genome.wustl.edu	37	8	64099143	64099143	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	64099143	64099143	A	T	SNP	YTHDF3	ENST00000539294	human	ensembl	74_37	+1	known	missense	c.571	p.T191S	1.000	NULL	pfam_YTH_domain,pfscan_YTH_domain	-	no_errors	YTHDF3	HGNC	ENSG00000185728				74	0	0	83	9	9.78261
BHLHE22	0	genome.wustl.edu	37	8	65494116	65494116	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	65494116	65494116	G	A	SNP	BHLHE22	ENST00000321870	human	ensembl	74_37	+1	known	missense	c.769	p.D257N	1.000	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	BHLHE22	HGNC	ENSG00000180828				24	0	0	20	3	13.0435
PDE7A	0	genome.wustl.edu	37	8	66651787	66651787	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	66651787	66651787	C	A	SNP	PDE7A	ENST00000401827	human	ensembl	74_37	-1	known	missense	c.545	p.G182V	1.000	NULL	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE7A	HGNC	ENSG00000205268				76	0	0	79	5	5.95238
DNAJC5B	0	genome.wustl.edu	37	8	66963796	66963796	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	66963796	66963796	T	C	SNP	DNAJC5B	ENST00000276570	human	ensembl	74_37	+1	known	missense	c.14	p.I5T	0.152	superfamily_DnaJ_domain	pfam_DnaJ_domain,superfamily_DnaJ_domain,smart_DnaJ_domain,pfscan_DnaJ_domain,prints_DnaJ_domain	-	no_errors	DNAJC5B	HGNC	ENSG00000147570				97	0	0	102	16	13.5593
ADHFE1	0	genome.wustl.edu	37	8	67364293	67364293	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	67364293	67364293	C	T	SNP	ADHFE1	ENST00000396623	human	ensembl	74_37	+1	known	silent	c.840	p.D280	1.000	pfam_ADH_Fe	pfam_ADH_Fe	-	no_errors	ADHFE1	HGNC	ENSG00000147576				52	0	0	67	11	14.1026
DEFA4	0	genome.wustl.edu	37	8	6793553	6793553	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	6793553	6793553	G	A	SNP	DEFA4	ENST00000297435	human	ensembl	74_37	-1	known	missense	c.283	p.R95C	0.008	NULL	pfam_Defensin_propep,pfam_Mammalian_defensins,smart_Defensin_beta/neutrophil,pirsf_Alpha-defensin	-	no_errors	DEFA4	HGNC	ENSG00000164821				101	0	0	115	22	16.0584
CSPP1	0	genome.wustl.edu	37	8	68076737	68076737	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	68076737	68076737	C	A	SNP	CSPP1	ENST00000262210	human	ensembl	74_37	+1	known	missense	c.2807	p.P936H	0.000	NULL	NULL	-	no_errors	CSPP1	HGNC	ENSG00000104218				180	0	0	226	13	5.43933
ARFGEF1	0	genome.wustl.edu	37	8	68111167	68111167	+	RNA	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	68111167	68111167	C	T	SNP	ARFGEF1	ENST00000517955	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.890	-	-	-	no_errors	ARFGEF1	HGNC	ENSG00000066777				57	0	0	83	8	8.79121
ARFGEF1	0	genome.wustl.edu	37	8	68150610	68150610	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	68150610	68150610	T	C	SNP	ARFGEF1	ENST00000262215	human	ensembl	74_37	-1	known	missense	c.3257	p.Q1086R	1.000	superfamily_ARM-type_fold	pfam_Sec7_dom,pfam_DUF1981_Sec7_assoc,superfamily_Sec7_dom,superfamily_ARM-type_fold,smart_Sec7_dom,pfscan_Sec7_dom	-	no_errors	ARFGEF1	HGNC	ENSG00000066777				109	0	0	113	6	5.04202
ARFGEF1	0	genome.wustl.edu	37	8	68208816	68208816	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	68208816	68208816	G	A	SNP	ARFGEF1	ENST00000262215	human	ensembl	74_37	-1	known	silent	c.489	p.H163	1.000	superfamily_ARM-type_fold	pfam_Sec7_dom,pfam_DUF1981_Sec7_assoc,superfamily_Sec7_dom,superfamily_ARM-type_fold,smart_Sec7_dom,pfscan_Sec7_dom	-	no_errors	ARFGEF1	HGNC	ENSG00000066777				75	0	0	70	4	5.40541
ARFGEF1	0	genome.wustl.edu	37	8	68208822	68208822	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	68208822	68208822	T	C	SNP	ARFGEF1	ENST00000262215	human	ensembl	74_37	-1	known	silent	c.483	p.S161	0.792	superfamily_ARM-type_fold	pfam_Sec7_dom,pfam_DUF1981_Sec7_assoc,superfamily_Sec7_dom,superfamily_ARM-type_fold,smart_Sec7_dom,pfscan_Sec7_dom	-	no_errors	ARFGEF1	HGNC	ENSG00000066777				74	0	0	68	5	6.84932
CPA6	0	genome.wustl.edu	37	8	68658339	68658339	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	68658339	68658339	C	T	SNP	CPA6	ENST00000297770	human	ensembl	74_37	-1	known	missense	c.26	p.G9D	0.970	NULL	pfam_Peptidase_M14,pfam_Prot_inh_M14A,superfamily_Prot_inh_propept,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPA6	HGNC	ENSG00000165078				52	0	0	52	11	17.4603
PREX2	0	genome.wustl.edu	37	8	68956765	68956765	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	68956765	68956765	C	T	SNP	PREX2	ENST00000288368	human	ensembl	74_37	+1	known	missense	c.883	p.L295F	1.000	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,pfam_DEP_dom,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX2	HGNC	ENSG00000046889				157	0	0	177	12	6.34921
PREX2	0	genome.wustl.edu	37	8	68965388	68965388	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	68965388	68965388	G	A	SNP	PREX2	ENST00000288368	human	ensembl	74_37	+1	known	missense	c.1000	p.A334T	1.000	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,pfam_DEP_dom,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX2	HGNC	ENSG00000046889				92	0	0	80	17	17.5258
PREX2	0	genome.wustl.edu	37	8	68968157	68968157	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	68968157	68968157	A	T	SNP	PREX2	ENST00000288368	human	ensembl	74_37	+1	known	missense	c.1186	p.I396F	1.000	pfam_DEP_dom,smart_DEP_dom,pfscan_DEP_dom	pfam_DH-domain,pfam_DEP_dom,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX2	HGNC	ENSG00000046889				103	0	0	113	6	5.04202
PREX2	0	genome.wustl.edu	37	8	68993075	68993075	+	Splice_Site	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	68993075	68993075	T	C	SNP	PREX2	ENST00000288368	human	ensembl	74_37	+1	known	splice_site	c.1878+2	e17+2	1.000	-	-	-	no_errors	PREX2	HGNC	ENSG00000046889				118	0	0	78	15	16.129
PREX2	0	genome.wustl.edu	37	8	69011996	69011996	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	69011996	69011996	C	A	SNP	PREX2	ENST00000288368	human	ensembl	74_37	+1	known	missense	c.2633	p.P878H	1.000	NULL	pfam_DH-domain,pfam_DEP_dom,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX2	HGNC	ENSG00000046889				114	0	0	106	12	10.1695
C8orf34	0	genome.wustl.edu	37	8	69351824	69351824	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	69351824	69351824	C	T	SNP	C8orf34	ENST00000518698	human	ensembl	74_37	+1	known	nonsense	c.418	p.Q140*	1.000	superfamily_cAMP_dep_PK_reg_su_I/II_a/b	superfamily_cAMP_dep_PK_reg_su_I/II_a/b	-	no_errors	C8orf34	HGNC	ENSG00000165084				70	0	0	86	5	5.49451
PRDM14	0	genome.wustl.edu	37	8	70971024	70971024	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	70971024	70971024	A	G	SNP	PRDM14	ENST00000276594	human	ensembl	74_37	-1	known	missense	c.1237	p.Y413H	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_SET_dom,smart_SET_dom,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM14	HGNC	ENSG00000147596				72	0	0	94	8	7.84314
PRDM14	0	genome.wustl.edu	37	8	70980555	70980555	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	70980555	70980555	G	A	SNP	PRDM14	ENST00000276594	human	ensembl	74_37	-1	known	silent	c.822	p.I274	0.948	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	pfam_Znf_C2H2,pfam_SET_dom,smart_SET_dom,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM14	HGNC	ENSG00000147596				97	0	0	117	10	7.87402
EYA1	0	genome.wustl.edu	37	8	72234492	72234492	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	72234492	72234492	T	C	SNP	EYA1	ENST00000340726	human	ensembl	74_37	-1	known	missense	c.214	p.S72G	1.000	NULL	pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_EYA	-	no_errors	EYA1	HGNC	ENSG00000104313				134	0	0	124	22	15.0685
MSC	0	genome.wustl.edu	37	8	72755945	72755945	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	72755945	72755945	C	T	SNP	MSC	ENST00000325509	human	ensembl	74_37	-1	known	missense	c.469	p.A157T	1.000	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	MSC	HGNC	ENSG00000178860				64	0	0	90	7	7.21649
KCNB2	0	genome.wustl.edu	37	8	73480200	73480200	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	73480200	73480200	C	T	SNP	KCNB2	ENST00000523207	human	ensembl	74_37	+1	known	silent	c.231	p.C77	0.998	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv8	pfam_K_chnl_volt-dep_Kv2,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv2.2,prints_K_chnl_volt-dep_Kv2,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv8	-	no_errors	KCNB2	HGNC	ENSG00000182674				92	0	0	118	24	16.9014
KCNB2	0	genome.wustl.edu	37	8	73848595	73848595	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	73848595	73848595	G	T	SNP	KCNB2	ENST00000523207	human	ensembl	74_37	+1	known	missense	c.1005	p.L335F	1.000	pfam_Ion_trans_dom,prints_K_chnl,prints_K_chnl_volt-dep_Kv	pfam_K_chnl_volt-dep_Kv2,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv2.2,prints_K_chnl_volt-dep_Kv2,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv8	-	no_errors	KCNB2	HGNC	ENSG00000182674				124	0	0	160	27	14.4385
KCNB2	0	genome.wustl.edu	37	8	73848886	73848886	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	73848886	73848886	A	G	SNP	KCNB2	ENST00000523207	human	ensembl	74_37	+1	known	silent	c.1296	p.K432	0.985	prints_K_chnl_volt-dep_Kv2,prints_K_chnl_volt-dep_Kv6	pfam_K_chnl_volt-dep_Kv2,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv2.2,prints_K_chnl_volt-dep_Kv2,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv8	-	no_errors	KCNB2	HGNC	ENSG00000182674				90	0	0	98	7	6.66667
ZFHX4	0	genome.wustl.edu	37	8	77767582	77767582	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	77767582	77767582	G	A	SNP	ZFHX4	ENST00000521891	human	ensembl	74_37	+1	known	missense	c.8425	p.A2809T	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656				43	0	0	63	7	10
ZBTB10	0	genome.wustl.edu	37	8	81431715	81431715	+	Silent	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	81431715	81431715	C	A	SNP	ZBTB10	ENST00000430430	human	ensembl	74_37	+1	known	silent	c.2568	p.P856	0.026	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB10	HGNC	ENSG00000205189				41	0	0	34	9	20.9302
SGK223	0	genome.wustl.edu	37	8	8185778	8185778	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	8185778	8185778	G	A	SNP	SGK223	ENST00000330777	human	ensembl	74_37	-1	known	silent	c.2514	p.P838	0.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	-	no_errors	SGK223	Uniprot_gn	ENSG00000182319				208	0	0	273	42	13.3333
PAG1	0	genome.wustl.edu	37	8	81897148	81897148	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	81897148	81897148	C	A	SNP	PAG1	ENST00000220597	human	ensembl	74_37	-1	known	nonsense	c.739	p.G247*	0.070	NULL	NULL	-	no_errors	PAG1	HGNC	ENSG00000076641				143	1	0.694444	176	11	5.88235
FABP5	0	genome.wustl.edu	37	8	82196782	82196782	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	82196782	82196782	A	G	SNP	FABP5	ENST00000297258	human	ensembl	74_37	+1	known	missense	c.388	p.I130V	0.090	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_Fatty_acid-bd	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_Fatty_acid-bd	-	no_errors	FABP5	HGNC	ENSG00000164687				57	0	0	64	6	8.57143
SGK223	0	genome.wustl.edu	37	8	8234932	8234932	+	Silent	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	8234932	8234932	G	T	SNP	SGK223	ENST00000330777	human	ensembl	74_37	-1	known	silent	c.987	p.S329	0.099	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	-	no_errors	SGK223	Uniprot_gn	ENSG00000182319				52	0	0	88	5	5.37634
IMPA1	0	genome.wustl.edu	37	8	82593741	82593741	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	82593741	82593741	C	T	SNP	IMPA1	ENST00000449740	human	ensembl	74_37	-1	known	missense	c.232	p.A78T	1.000	pfam_Inositol_monophosphatase,prints_Inositol_monoPase_Li-sen	pfam_Inositol_monophosphatase,prints_Inositol_monoPase_Li-sen,prints_Inositol_monophosphatase	-	no_errors	IMPA1	HGNC	ENSG00000133731				65	0	0	66	6	8.33333
C8orf59	0	genome.wustl.edu	37	8	86127243	86127243	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	86127243	86127243	T	G	SNP	C8orf59	ENST00000417663	human	ensembl	74_37	-1	known	missense	c.138	p.K46N	0.754	NULL	NULL	-	no_errors	C8orf59	HGNC	ENSG00000176731				35	0	0	33	3	8.33333
CA3	0	genome.wustl.edu	37	8	86360305	86360305	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	86360305	86360305	C	T	SNP	CA3	ENST00000285381	human	ensembl	74_37	+1	known	missense	c.706	p.P236S	1.000	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	-	no_errors	CA3	HGNC	ENSG00000164879				50	0	0	69	4	5.47945
SLC7A13	0	genome.wustl.edu	37	8	87230005	87230005	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	87230005	87230005	C	A	SNP	SLC7A13	ENST00000297524	human	ensembl	74_37	-1	known	missense	c.873	p.M291I	0.004	pfam_AA-permease/SLC12A_dom,pirsf_AA/rel_permease1	pfam_AA-permease/SLC12A_dom,pirsf_AA/rel_permease1	-	no_errors	SLC7A13	HGNC	ENSG00000164893				179	0	0	167	28	14.359
WWP1	0	genome.wustl.edu	37	8	87443720	87443720	+	Splice_Site	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	87443720	87443720	G	T	SNP	WWP1	ENST00000265428	human	ensembl	74_37	+1	known	splice_site	c.1472+1	e11+1	1.000	-	-	-	no_errors	WWP1	HGNC	ENSG00000123124				64	0	0	86	13	13.1313
MFHAS1	0	genome.wustl.edu	37	8	8748972	8748972	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	8748972	8748972	A	G	SNP	MFHAS1	ENST00000276282	human	ensembl	74_37	-1	known	missense	c.1597	p.C533R	1.000	superfamily_P-loop_NTPase	pfam_Leu-rich_rpt,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	MFHAS1	HGNC	ENSG00000147324				38	0	0	62	5	7.46269
MMP16	0	genome.wustl.edu	37	8	89086947	89086947	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	89086947	89086947	T	C	SNP	MMP16	ENST00000286614	human	ensembl	74_37	-1	known	missense	c.1108	p.N370D	1.000	pirsf_Pept_M10A_Metazoans,pfam_Hemopexin-like_repeat,superfamily_Hemopexin-like_dom,smart_Hemopexin-like_repeat	pirsf_Pept_M10A_Metazoans,pfam_Hemopexin-like_repeat,pfam_Pept_M10_metallopeptidase,pfam_Pept_M10A_metallopeptidase_C,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin-like_repeat,prints_Pept_M10A	-	no_errors	MMP16	HGNC	ENSG00000156103				157	0	0	165	26	13.6126
MMP16	0	genome.wustl.edu	37	8	89128833	89128833	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	89128833	89128833	G	A	SNP	MMP16	ENST00000286614	human	ensembl	74_37	-1	known	missense	c.986	p.P329L	1.000	pirsf_Pept_M10A_Metazoans	pirsf_Pept_M10A_Metazoans,pfam_Hemopexin-like_repeat,pfam_Pept_M10_metallopeptidase,pfam_Pept_M10A_metallopeptidase_C,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin-like_repeat,prints_Pept_M10A	-	no_errors	MMP16	HGNC	ENSG00000156103				120	0	0	171	14	7.56757
PPP1R3B	0	genome.wustl.edu	37	8	8998972	8998972	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	8998972	8998972	A	G	SNP	PPP1R3B	ENST00000310455	human	ensembl	74_37	-1	known	missense	c.190	p.S64P	1.000	pirsf_Pase-1_Glycogen_target-su_met	pfam_CBM_21,pirsf_Pase-1_Glycogen_target-su_met,pfscan_CBM_21	-	no_errors	PPP1R3B	HGNC	ENSG00000173281				106	0	0	147	10	6.36943
PPP1R3B	0	genome.wustl.edu	37	8	8999110	8999110	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	8999110	8999110	G	A	SNP	PPP1R3B	ENST00000310455	human	ensembl	74_37	-1	known	missense	c.52	p.R18C	0.977	pirsf_Pase-1_Glycogen_target-su_met	pfam_CBM_21,pirsf_Pase-1_Glycogen_target-su_met,pfscan_CBM_21	-	no_errors	PPP1R3B	HGNC	ENSG00000173281				63	0	0	53	8	13.1148
SLC26A7	0	genome.wustl.edu	37	8	92374603	92374603	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	92374603	92374603	T	C	SNP	SLC26A7	ENST00000309536	human	ensembl	74_37	+1	known	missense	c.1337	p.V446A	0.828	NULL	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom	-	no_errors	SLC26A7	HGNC	ENSG00000147606				192	0	0	213	13	5.75221
TNKS	0	genome.wustl.edu	37	8	9413539	9413539	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	9413539	9413539	A	G	SNP	TNKS	ENST00000310430	human	ensembl	74_37	+1	known	silent	c.90	p.P30	0.998	NULL	pfam_Ankyrin_rpt,pfam_Poly(ADP-ribose)pol_cat_dom,pfam_SAM_2,pfam_SAM_type1,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SAM,pfscan_Poly(ADP-ribose)pol_cat_dom,prints_Ankyrin_rpt	-	no_errors	TNKS	HGNC	ENSG00000173273				28	0	0	38	6	13.6364
RBM12B	0	genome.wustl.edu	37	8	94745668	94745668	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	94745668	94745668	C	T	SNP	RBM12B	ENST00000399300	human	ensembl	74_37	-1	known	missense	c.2971	p.V991I	1.000	smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM12B	HGNC	ENSG00000183808				83	0	0	68	7	9.33333
RBM12B	0	genome.wustl.edu	37	8	94747482	94747482	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	94747482	94747482	A	G	SNP	RBM12B	ENST00000399300	human	ensembl	74_37	-1	known	missense	c.1157	p.V386A	0.022	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM12B	HGNC	ENSG00000183808				251	0	0	260	14	5.10949
DPY19L4	0	genome.wustl.edu	37	8	95782721	95782721	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	95782721	95782721	G	A	SNP	DPY19L4	ENST00000414645	human	ensembl	74_37	+1	known	missense	c.1376	p.R459Q	0.307	pfam_Dpy-19	pfam_Dpy-19	-	no_errors	DPY19L4	HGNC	ENSG00000156162				84	0	0	85	13	13.2653
GDF6	0	genome.wustl.edu	37	8	97172915	97172915	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	97172915	97172915	A	T	SNP	GDF6	ENST00000287020	human	ensembl	74_37	-1	known	missense	c.6	p.D2E	1.000	NULL	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C	-	no_errors	GDF6	HGNC	ENSG00000156466				34	0	0	47	10	17.5439
MATN2	0	genome.wustl.edu	37	8	99039747	99039747	+	Silent	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	99039747	99039747	A	C	SNP	MATN2	ENST00000254898	human	ensembl	74_37	+1	known	silent	c.2046	p.I682	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_Matrilin_coiled-coil_trimer,smart_VWF_A,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_VWF_A	-	no_errors	MATN2	HGNC	ENSG00000132561				108	0	0	142	9	5.96026
NIPAL2	0	genome.wustl.edu	37	8	99248423	99248423	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	99248423	99248423	A	G	SNP	NIPAL2	ENST00000341166	human	ensembl	74_37	-1	known	silent	c.396	p.V132	0.522	pfam_Mg_trans_NIPA	pfam_Mg_trans_NIPA	-	no_errors	NIPAL2	HGNC	ENSG00000104361				68	0	0	69	5	6.75676
KCNS2	0	genome.wustl.edu	37	8	99440332	99440332	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	99440332	99440332	G	A	SNP	KCNS2	ENST00000287042	human	ensembl	74_37	+1	known	missense	c.125	p.R42H	1.000	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl_volt-dep_Kv9	pfam_T1-type_BTB,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv2	-	no_errors	KCNS2	HGNC	ENSG00000156486				44	0	0	73	6	7.59494
STK3	0	genome.wustl.edu	37	8	99468135	99468135	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	99468135	99468135	T	C	SNP	STK3	ENST00000419617	human	ensembl	74_37	-1	known	missense	c.1411	p.T471A	1.000	pfam_Mst1_SARAH_domain,pfscan_SARAH_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Mst1_SARAH_domain,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SARAH_dom,pfscan_Prot_kinase_dom	-	no_errors	STK3	HGNC	ENSG00000104375				54	0	0	53	4	7.01754
CCDC180	0	genome.wustl.edu	37	9	100074423	100074423	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	100074423	100074423	G	A	SNP	CCDC180	ENST00000375202	human	ensembl	74_37	+1	known	missense	c.421	p.A141T	0.000	NULL	NULL	-	no_errors	CCDC180	HGNC	ENSG00000197816				78	0	0	77	8	9.41176
TDRD7	0	genome.wustl.edu	37	9	100204028	100204028	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	100204028	100204028	G	A	SNP	TDRD7	ENST00000355295	human	ensembl	74_37	+1	known	silent	c.726	p.K242	1.000	NULL	pfam_Tudor,smart_Tudor,pfscan_Tudor	-	no_errors	TDRD7	HGNC	ENSG00000196116				79	0	0	57	4	6.55738
TDRD7	0	genome.wustl.edu	37	9	100222954	100222954	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	100222954	100222954	G	T	SNP	TDRD7	ENST00000355295	human	ensembl	74_37	+1	known	missense	c.1350	p.E450D	0.032	NULL	pfam_Tudor,smart_Tudor,pfscan_Tudor	-	no_errors	TDRD7	HGNC	ENSG00000196116				81	0	0	49	10	16.9492
NCBP1	0	genome.wustl.edu	37	9	100403911	100403911	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	100403911	100403911	A	G	SNP	NCBP1	ENST00000375147	human	ensembl	74_37	+1	known	missense	c.191	p.Y64C	1.000	pfam_MIF4G-like_typ-3,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3	pfam_MIF4G-like_typ-2,pfam_MIF4G-like_typ-1,pfam_MIF4G-like_typ-3,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3	-	no_errors	NCBP1	HGNC	ENSG00000136937				176	0	0	131	8	5.7554
NCBP1	0	genome.wustl.edu	37	9	100425241	100425241	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	100425241	100425241	A	G	SNP	NCBP1	ENST00000375147	human	ensembl	74_37	+1	known	missense	c.1709	p.H570R	1.000	pfam_MIF4G-like_typ-2,superfamily_ARM-type_fold	pfam_MIF4G-like_typ-2,pfam_MIF4G-like_typ-1,pfam_MIF4G-like_typ-3,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3	-	no_errors	NCBP1	HGNC	ENSG00000136937				138	0	0	76	21	21.6495
ANKS6	0	genome.wustl.edu	37	9	101533295	101533295	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	101533295	101533295	G	A	SNP	ANKS6	ENST00000375018	human	ensembl	74_37	-1	known	missense	c.1855	p.P619S	0.967	NULL	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_SAM_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SAM,prints_Ankyrin_rpt	-	no_errors	ANKS6	HGNC	ENSG00000165138				53	0	0	46	11	19.2982
GALNT12	0	genome.wustl.edu	37	9	101602296	101602296	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	101602296	101602296	G	A	SNP	GALNT12	ENST00000375011	human	ensembl	74_37	+1	known	missense	c.1225	p.D409N	1.000	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT12	HGNC	ENSG00000119514				148	1	0.671141	118	9	7.08661
COL15A1	0	genome.wustl.edu	37	9	101824277	101824277	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	101824277	101824277	G	A	SNP	COL15A1	ENST00000375001	human	ensembl	74_37	+1	known	missense	c.3427	p.D1143N	0.603	pfam_Collagenase_NC10/endostatin	pfam_Collagenase_NC10/endostatin,pfam_Collagen,superfamily_C-type_lectin_fold,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	-	no_errors	COL15A1	HGNC	ENSG00000204291				160	0	0	142	8	5.33333
INVS	0	genome.wustl.edu	37	9	103002483	103002483	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	103002483	103002483	A	G	SNP	INVS	ENST00000262457	human	ensembl	74_37	+1	known	missense	c.757	p.N253D	1.000	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_IQ_motif_EF-hand-BS,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,smart_Ankyrin_rpt,smart_IQ_motif_EF-hand-BS,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS,prints_Ankyrin_rpt	-	no_errors	INVS	HGNC	ENSG00000119509				95	0	0	68	4	5.55556
INVS	0	genome.wustl.edu	37	9	103054911	103054911	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	103054911	103054911	A	G	SNP	INVS	ENST00000262457	human	ensembl	74_37	+1	known	missense	c.2372	p.Q791R	0.973	NULL	pfam_Ankyrin_rpt,pfam_IQ_motif_EF-hand-BS,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,smart_Ankyrin_rpt,smart_IQ_motif_EF-hand-BS,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS,prints_Ankyrin_rpt	-	no_errors	INVS	HGNC	ENSG00000119509				59	0	0	45	4	8.16327
INVS	0	genome.wustl.edu	37	9	103054982	103054982	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	103054982	103054982	C	T	SNP	INVS	ENST00000262457	human	ensembl	74_37	+1	known	missense	c.2443	p.R815W	0.997	NULL	pfam_Ankyrin_rpt,pfam_IQ_motif_EF-hand-BS,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,smart_Ankyrin_rpt,smart_IQ_motif_EF-hand-BS,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS,prints_Ankyrin_rpt	-	no_errors	INVS	HGNC	ENSG00000119509				57	0	0	59	5	7.8125
INVS	0	genome.wustl.edu	37	9	103055045	103055045	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	103055045	103055045	A	G	SNP	INVS	ENST00000262457	human	ensembl	74_37	+1	known	missense	c.2506	p.T836A	0.002	NULL	pfam_Ankyrin_rpt,pfam_IQ_motif_EF-hand-BS,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,smart_Ankyrin_rpt,smart_IQ_motif_EF-hand-BS,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS,prints_Ankyrin_rpt	-	no_errors	INVS	HGNC	ENSG00000119509				69	0	0	62	7	10.1449
TEX10	0	genome.wustl.edu	37	9	103109393	103109393	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	103109393	103109393	T	A	SNP	TEX10	ENST00000374902	human	ensembl	74_37	-1	known	missense	c.476	p.D159V	1.000	pfam_IPI1/TEX10,superfamily_ARM-type_fold	pfam_IPI1/TEX10,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	TEX10	HGNC	ENSG00000136891				131	0	0	107	11	9.32203
LPPR1	0	genome.wustl.edu	37	9	104048518	104048518	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	104048518	104048518	G	T	SNP	LPPR1	ENST00000374874	human	ensembl	74_37	+1	known	missense	c.385	p.G129W	1.000	superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	-	no_errors	LPPR1	Uniprot_gn	ENSG00000148123				69	0	0	61	5	7.57576
RNF20	0	genome.wustl.edu	37	9	104312974	104312974	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	104312974	104312974	T	C	SNP	RNF20	ENST00000389120	human	ensembl	74_37	+1	known	silent	c.1179	p.N393	0.895	superfamily_STAT_TF_coiled-coil	superfamily_STAT_TF_coiled-coil,superfamily_Prefoldin,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF20	HGNC	ENSG00000155827				227	0	0	187	20	9.66184
GRIN3A	0	genome.wustl.edu	37	9	104385604	104385604	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	104385604	104385604	T	C	SNP	GRIN3A	ENST00000361820	human	ensembl	74_37	-1	known	missense	c.2610	p.I870M	0.547	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,superfamily_Peripla_BP_I,smart_Glu_rcpt_Glu/Gly-bd,smart_Iontro_glu_rcpt,prints_NMDA_rcpt	-	no_errors	GRIN3A	HGNC	ENSG00000198785				103	0	0	85	6	6.59341
GRIN3A	0	genome.wustl.edu	37	9	104385638	104385638	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	104385638	104385638	C	T	SNP	GRIN3A	ENST00000361820	human	ensembl	74_37	-1	known	missense	c.2576	p.C859Y	1.000	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,superfamily_Peripla_BP_I,smart_Glu_rcpt_Glu/Gly-bd,smart_Iontro_glu_rcpt,prints_NMDA_rcpt	-	no_errors	GRIN3A	HGNC	ENSG00000198785				135	0	0	113	9	7.37705
DMRT2	0	genome.wustl.edu	37	9	1057243	1057243	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	1057243	1057243	T	C	SNP	DMRT2	ENST00000302441	human	ensembl	74_37	+1	known	silent	c.1656	p.P552	0.994	NULL	pfam_DM_DNA-bd,superfamily_DM_DNA-bd,smart_DM_DNA-bd,pfscan_DM_DNA-bd	-	no_errors	DMRT2	HGNC	ENSG00000173253				98	0	0	83	5	5.68182
CYLC2	0	genome.wustl.edu	37	9	105767460	105767460	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	105767460	105767460	G	A	SNP	CYLC2	ENST00000374798	human	ensembl	74_37	+1	known	missense	c.547	p.G183R	0.000	NULL	NULL	-	no_errors	CYLC2	HGNC	ENSG00000155833				37	0	0	24	3	11.1111
SMC2	0	genome.wustl.edu	37	9	106900323	106900323	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	106900323	106900323	A	G	SNP	SMC2	ENST00000286398	human	ensembl	74_37	+1	known	missense	c.3294	p.I1098M	0.943	pfam_RecF/RecN/SMC_N,superfamily_P-loop_NTPase	pfam_RecF/RecN/SMC_N,pfam_SMC_hinge,superfamily_P-loop_NTPase,superfamily_SMC_hinge,smart_SMC_hinge	-	no_errors	SMC2	HGNC	ENSG00000136824				149	0	0	89	9	9.18367
OR13F1	0	genome.wustl.edu	37	9	107266759	107266759	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	107266759	107266759	G	A	SNP	OR13F1	ENST00000334726	human	ensembl	74_37	+1	known	nonsense	c.216	p.W72*	0.687	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR13F1	HGNC	ENSG00000186881				151	1	0.657895	140	9	6.04027
OR13F1	0	genome.wustl.edu	37	9	107267453	107267453	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	107267453	107267453	T	A	SNP	OR13F1	ENST00000334726	human	ensembl	74_37	+1	known	missense	c.910	p.L304M	0.313	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR13F1	HGNC	ENSG00000186881				94	0	0	58	4	6.45161
OR13C4	0	genome.wustl.edu	37	9	107289076	107289076	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	107289076	107289076	C	T	SNP	OR13C4	ENST00000277216	human	ensembl	74_37	-1	known	missense	c.415	p.V139M	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR13C4	HGNC	ENSG00000148136				120	0	0	83	12	12.6316
OR13C4	0	genome.wustl.edu	37	9	107289113	107289113	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	107289113	107289113	G	C	SNP	OR13C4	ENST00000277216	human	ensembl	74_37	-1	known	missense	c.378	p.I126M	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR13C4	HGNC	ENSG00000148136				130	0	0	90	14	13.4615
OR13C5	0	genome.wustl.edu	37	9	107361037	107361037	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	107361037	107361037	A	T	SNP	OR13C5	ENST00000374779	human	ensembl	74_37	-1	known	missense	c.658	p.L220I	0.001	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR13C5	HGNC	ENSG00000255800				146	0	0	99	10	9.17431
OR13D1	0	genome.wustl.edu	37	9	107457074	107457074	+	Silent	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	107457074	107457074	C	A	SNP	OR13D1	ENST00000318763	human	ensembl	74_37	+1	known	silent	c.372	p.I124	0.756	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR13D1	HGNC	ENSG00000179055				234	0	0	179	14	7.25389
NIPSNAP3B	0	genome.wustl.edu	37	9	107535336	107535336	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	107535336	107535336	A	G	SNP	NIPSNAP3B	ENST00000374762	human	ensembl	74_37	+1	known	silent	c.726	p.S242	0.020	pfam_NIPSNAP,superfamily_Dimeric_a/b-barrel	pfam_NIPSNAP,superfamily_Dimeric_a/b-barrel	-	no_errors	NIPSNAP3B	HGNC	ENSG00000165028				93	0	0	53	4	7.01754
ZNF462	0	genome.wustl.edu	37	9	109687976	109687976	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	109687976	109687976	G	A	SNP	ZNF462	ENST00000457913	human	ensembl	74_37	+1	known	missense	c.1783	p.A595T	0.933	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF462	HGNC	ENSG00000148143				97	0	0	91	7	7.14286
ACTL7B	0	genome.wustl.edu	37	9	111617647	111617647	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	111617647	111617647	G	A	SNP	ACTL7B	ENST00000374667	human	ensembl	74_37	-1	known	silent	c.564	p.S188	0.909	pfam_Actin-related,smart_Actin-related,prints_Actin-related	pfam_Actin-related,smart_Actin-related,prints_Actin-related	-	no_errors	ACTL7B	HGNC	ENSG00000148156				42	0	0	31	15	32.6087
ACTL7B	0	genome.wustl.edu	37	9	111617817	111617817	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	111617817	111617817	A	G	SNP	ACTL7B	ENST00000374667	human	ensembl	74_37	-1	known	missense	c.394	p.Y132H	1.000	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,smart_Actin-related,prints_Actin-related	-	no_errors	ACTL7B	HGNC	ENSG00000148156				47	0	0	40	3	6.97674
ACTL7A	0	genome.wustl.edu	37	9	111625473	111625473	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	111625473	111625473	A	G	SNP	ACTL7A	ENST00000333999	human	ensembl	74_37	+1	known	missense	c.871	p.K291E	1.000	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,smart_Actin-related,prints_Actin-related	-	no_errors	ACTL7A	HGNC	ENSG00000187003				74	0	0	63	6	8.69565
ACTL7A	0	genome.wustl.edu	37	9	111625641	111625641	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	111625641	111625641	G	A	SNP	ACTL7A	ENST00000333999	human	ensembl	74_37	+1	known	missense	c.1039	p.D347N	1.000	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,smart_Actin-related,prints_Actin-related	-	no_errors	ACTL7A	HGNC	ENSG00000187003				99	0	0	102	12	10.5263
FAM206A	0	genome.wustl.edu	37	9	111697919	111697919	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	111697919	111697919	T	C	SNP	FAM206A	ENST00000322940	human	ensembl	74_37	+1	known	silent	c.81	p.D27	1.000	superfamily_Single_hybrid_motif	pfam_GCV_H,superfamily_Single_hybrid_motif	-	no_errors	FAM206A	HGNC	ENSG00000119328				84	0	0	49	5	9.25926
FRRS1L	0	genome.wustl.edu	37	9	111911987	111911987	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	111911987	111911987	A	G	SNP	FRRS1L	ENST00000561981	human	ensembl	74_37	-1	known	silent	c.405	p.P135	1.000	NULL	pfam_DOMON_domain,smart_DOMON_domain,pfscan_DOMON_domain	-	no_errors	FRRS1L	HGNC	ENSG00000260230				52	0	0	52	3	5.45455
EPB41L4B	0	genome.wustl.edu	37	9	112029765	112029765	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	112029765	112029765	T	C	SNP	EPB41L4B	ENST00000374566	human	ensembl	74_37	-1	known	missense	c.521	p.E174G	1.000	pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	EPB41L4B	HGNC	ENSG00000095203				79	0	0	64	5	7.24638
PTPN3	0	genome.wustl.edu	37	9	112225670	112225670	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	112225670	112225670	T	C	SNP	PTPN3	ENST00000374541	human	ensembl	74_37	-1	known	missense	c.45	p.I15M	0.424	pirsf_Tyr_Pase_non-rcpt_typ-3/4	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_PDZ,pfam_Dual-sp_phosphatase_cat-dom,superfamily_FERM_central,superfamily_PDZ,smart_Band_41_domain,smart_PDZ,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-3/4,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam,prints_Ez/rad/moesin_like,pfscan_FERM_domain,pfscan_PDZ,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN3	HGNC	ENSG00000070159				133	1	0.746269	98	6	5.76923
PALM2-AKAP2	0	genome.wustl.edu	37	9	112898690	112898690	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	112898690	112898690	A	T	SNP	PALM2-AKAP2	ENST00000374530	human	ensembl	74_37	+1	known	missense	c.866	p.E289V	1.000	NULL	pfam_Paralemmin,pfam_RII_binding_1	-	no_errors	PALM2-AKAP2	HGNC	ENSG00000157654				109	0	0	96	6	5.88235
SVEP1	0	genome.wustl.edu	37	9	113169574	113169574	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	113169574	113169574	C	T	SNP	SVEP1	ENST00000401783	human	ensembl	74_37	-1	known	missense	c.8306	p.R2769H	0.000	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,pfam_EG-like_dom,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_Hyalin,pfam_VWF_A,pfam_Pentaxin,pfam_EGF_extracell,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Sushi_SCR_CCP,superfamily_Growth_fac_rcpt_N_dom,smart_VWF_A,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Pentaxin,pfscan_EG-like_dom,pfscan_Hyalin,pfscan_Sushi_SCR_CCP,pfscan_VWF_A,prints_Pentaxin	-	no_errors	SVEP1	HGNC	ENSG00000165124				150	0	0	97	31	24.2188
LPAR1	0	genome.wustl.edu	37	9	113637717	113637717	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	113637717	113637717	T	A	SNP	LPAR1	ENST00000538760	human	ensembl	74_37	-1	known	missense	c.1082	p.D361V	1.000	prints_LPA_rcpt_EDG2	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_LPA_rcpt_EDG2,prints_LPA_rcpt,prints_GPCR_Rhodpsn	-	no_errors	LPAR1	HGNC	ENSG00000198121				49	0	0	42	5	10.6383
KIAA0368	0	genome.wustl.edu	37	9	114134086	114134086	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	114134086	114134086	A	T	SNP	KIAA0368	ENST00000259335	human	ensembl	74_37	-1	known	missense	c.5086	p.Y1696N	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	KIAA0368	HGNC	ENSG00000136813				128	0	0	102	7	6.42202
KIAA0368	0	genome.wustl.edu	37	9	114145502	114145502	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	114145502	114145502	A	G	SNP	KIAA0368	ENST00000259335	human	ensembl	74_37	-1	known	silent	c.4326	p.V1442	0.700	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	KIAA0368	HGNC	ENSG00000136813				53	0	0	32	3	8.57143
ZNF483	0	genome.wustl.edu	37	9	114305075	114305075	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	114305075	114305075	G	A	SNP	ZNF483	ENST00000309235	human	ensembl	74_37	+1	known	silent	c.1860	p.T620	0.009	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF483	HGNC	ENSG00000173258				63	0	0	33	11	25
PTGR1	0	genome.wustl.edu	37	9	114337052	114337052	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	114337052	114337052	G	A	SNP	PTGR1	ENST00000309195	human	ensembl	74_37	-1	known	missense	c.722	p.A241V	0.987	pfam_ADH_C,smart_PKS_ER,tigrfam_B4_12hDH	pfam_ADH_C,superfamily_GroES-like,smart_PKS_ER,tigrfam_B4_12hDH	-	no_errors	PTGR1	HGNC	ENSG00000106853				164	0	0	141	16	10.1911
C9orf84	0	genome.wustl.edu	37	9	114454706	114454706	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	114454706	114454706	C	A	SNP	C9orf84	ENST00000318737	human	ensembl	74_37	-1	known	missense	c.3359	p.R1120M	0.000	NULL	superfamily_RuvA_2-like	-	no_errors	C9orf84	HGNC	ENSG00000165181				124	0	0	95	7	6.86275
C9orf84	0	genome.wustl.edu	37	9	114456540	114456540	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	114456540	114456540	T	C	SNP	C9orf84	ENST00000318737	human	ensembl	74_37	-1	known	missense	c.3094	p.K1032E	1.000	superfamily_RuvA_2-like	superfamily_RuvA_2-like	-	no_errors	C9orf84	HGNC	ENSG00000165181				310	0	0	225	23	9.27419
HSDL2	0	genome.wustl.edu	37	9	115166290	115166290	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	115166290	115166290	T	C	SNP	HSDL2	ENST00000398805	human	ensembl	74_37	+1	novel	silent	c.33	p.C11	1.000	NULL	pfam_SCP2_sterol-bd_dom,pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,superfamily_SCP2_sterol-bd_dom,prints_Glc/ribitol_DH	-	no_errors	HSDL2	HGNC	ENSG00000119471				157	0	0	110	13	10.5691
SNX30	0	genome.wustl.edu	37	9	115626531	115626531	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	115626531	115626531	C	A	SNP	SNX30	ENST00000374232	human	ensembl	74_37	+1	known	missense	c.1106	p.P369Q	1.000	pfam_Vps5_C,pfam_BAR_dom	pfam_Phox,pfam_Vps5_C,pfam_BAR_dom,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	SNX30	HGNC	ENSG00000148158				42	0	0	31	7	18.4211
FKBP15	0	genome.wustl.edu	37	9	115931875	115931875	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	115931875	115931875	T	C	SNP	FKBP15	ENST00000238256	human	ensembl	74_37	-1	known	silent	c.3114	p.L1038	0.199	NULL	pfam_PPIase_FKBP_dom,superfamily_Regulat_G_prot_signal_superfam,pfscan_PPIase_FKBP_dom	-	no_errors	FKBP15	HGNC	ENSG00000119321				94	0	0	95	10	9.52381
FKBP15	0	genome.wustl.edu	37	9	115936846	115936846	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	115936846	115936846	T	C	SNP	FKBP15	ENST00000238256	human	ensembl	74_37	-1	known	silent	c.2241	p.K747	0.999	superfamily_Regulat_G_prot_signal_superfam	pfam_PPIase_FKBP_dom,superfamily_Regulat_G_prot_signal_superfam,pfscan_PPIase_FKBP_dom	-	no_errors	FKBP15	HGNC	ENSG00000119321				142	0	0	100	10	9.09091
PRPF4	0	genome.wustl.edu	37	9	116049018	116049018	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	116049018	116049018	A	G	SNP	PRPF4	ENST00000374198	human	ensembl	74_37	+1	known	missense	c.845	p.H282R	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_PRP4-like,superfamily_WD40_repeat_dom,smart_SFM,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	PRPF4	HGNC	ENSG00000136875				384	1	0.25974	344	30	8.02139
ALAD	0	genome.wustl.edu	37	9	116151752	116151752	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	116151752	116151752	G	T	SNP	ALAD	ENST00000409155	human	ensembl	74_37	-1	known	missense	c.767	p.P256H	1.000	pfam_Porphobilinogen_synth,pirsf_Porphobilinogen_synth,prints_Porphobilinogen_synth	pfam_Porphobilinogen_synth,pirsf_Porphobilinogen_synth,prints_Porphobilinogen_synth	-	no_errors	ALAD	HGNC	ENSG00000148218				71	0	0	75	17	18.4783
RGS3	0	genome.wustl.edu	37	9	116263906	116263906	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	116263906	116263906	G	A	SNP	RGS3	ENST00000343817	human	ensembl	74_37	+1	known	missense	c.50	p.R17H	1.000	superfamily_PDZ	pfam_RGS_dom,pfam_PDZ,superfamily_Regulat_G_prot_signal_superfam,superfamily_PDZ,smart_PDZ,smart_Regulat_G_prot_signal_superfam,pfscan_PDZ,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS3	HGNC	ENSG00000138835				12	0	0	10	3	23.0769
RGS3	0	genome.wustl.edu	37	9	116359109	116359109	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	116359109	116359109	G	A	SNP	RGS3	ENST00000350696	human	ensembl	74_37	+1	known	missense	c.3473	p.G1158D	1.000	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam	pfam_RGS_dom,pfam_C2_dom,pfam_PDZ,superfamily_Regulat_G_prot_signal_superfam,superfamily_C2_dom,superfamily_PDZ,smart_C2_dom,smart_PDZ,smart_Regulat_G_prot_signal_superfam,pfscan_C2_dom,pfscan_PDZ,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS3	HGNC	ENSG00000138835				70	0	0	67	6	8.21918
ZNF618	0	genome.wustl.edu	37	9	116811193	116811193	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	116811193	116811193	G	A	SNP	ZNF618	ENST00000374126	human	ensembl	74_37	+1	known	silent	c.1611	p.V537	1.000	superfamily_RNaseH-like_dom	superfamily_RNaseH-like_dom,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF618	HGNC	ENSG00000157657				14	0	0	15	2	11.7647
FOXD4	0	genome.wustl.edu	37	9	117366	117366	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	117366	117366	C	T	SNP	FOXD4	ENST00000382500	human	ensembl	74_37	-1	known	missense	c.754	p.G252R	0.129	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXD4	HGNC	ENSG00000170122				14	0	0	17	6	26.087
ASTN2	0	genome.wustl.edu	37	9	119414057	119414057	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	119414057	119414057	C	T	SNP	ASTN2	ENST00000313400	human	ensembl	74_37	-1	known	missense	c.2822	p.G941D	1.000	smart_MACPF	pfam_MACPF,superfamily_Fibronectin_type3,smart_MACPF	-	no_errors	ASTN2	HGNC	ENSG00000148219				87	0	0	81	7	7.95455
TRIM32	0	genome.wustl.edu	37	9	119460783	119460783	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	119460783	119460783	G	A	SNP	TRIM32	ENST00000373983	human	ensembl	74_37	+1	known	silent	c.762	p.L254	1.000	NULL	pfam_NHL_repeat,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,smart_Znf_B-box,pfscan_NHL_repeat_subgr,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM32	HGNC	ENSG00000119401				41	0	0	33	10	23.2558
ASTN2	0	genome.wustl.edu	37	9	119488179	119488179	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	119488179	119488179	G	T	SNP	ASTN2	ENST00000313400	human	ensembl	74_37	-1	known	missense	c.2677	p.L893M	1.000	pfam_MACPF,smart_MACPF	pfam_MACPF,superfamily_Fibronectin_type3,smart_MACPF	-	no_errors	ASTN2	HGNC	ENSG00000148219				108	0	0	119	9	7.03125
ASTN2	0	genome.wustl.edu	37	9	119582989	119582989	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	119582989	119582989	T	C	SNP	ASTN2	ENST00000313400	human	ensembl	74_37	-1	known	missense	c.2114	p.D705G	1.000	NULL	pfam_MACPF,superfamily_Fibronectin_type3,smart_MACPF	-	no_errors	ASTN2	HGNC	ENSG00000148219				69	0	0	69	4	5.47945
TLR4	0	genome.wustl.edu	37	9	120476261	120476261	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	120476261	120476261	C	T	SNP	TLR4	ENST00000355622	human	ensembl	74_37	+1	known	missense	c.1855	p.P619S	0.000	pirsf_Toll-like_receptor,smart_Cys-rich_flank_reg_C	pirsf_Toll-like_receptor,pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR4	HGNC	ENSG00000136869				50	0	0	34	4	10.5263
BRINP1	0	genome.wustl.edu	37	9	121971132	121971132	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	121971132	121971132	T	C	SNP	BRINP1	ENST00000265922	human	ensembl	74_37	-1	known	missense	c.1010	p.D337G	1.000	NULL	pfam_MACPF,smart_MACPF	-	no_errors	BRINP1	HGNC	ENSG00000078725				75	0	0	82	7	7.86517
CDK5RAP2	0	genome.wustl.edu	37	9	123210340	123210340	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	123210340	123210340	C	T	SNP	CDK5RAP2	ENST00000349780	human	ensembl	74_37	-1	known	missense	c.2858	p.R953H	0.000	NULL	pfam_Spindle_assoc	-	no_errors	CDK5RAP2	HGNC	ENSG00000136861				144	0	0	93	40	30.0752
CDK5RAP2	0	genome.wustl.edu	37	9	123253685	123253685	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	123253685	123253685	T	C	SNP	CDK5RAP2	ENST00000349780	human	ensembl	74_37	-1	known	missense	c.1382	p.Y461C	0.045	NULL	pfam_Spindle_assoc	-	no_errors	CDK5RAP2	HGNC	ENSG00000136861				86	0	0	48	4	7.69231
C5	0	genome.wustl.edu	37	9	123776296	123776296	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	123776296	123776296	G	A	SNP	C5	ENST00000223642	human	ensembl	74_37	-1	known	silent	c.2112	p.C704	0.000	pfam_Anaphylatoxin/fibulin,superfamily_Anaphylatoxin_comp_syst,smart_Anaphylatoxin/fibulin,pfscan_Anaphylatoxin/fibulin	pfam_A2M_comp,pfam_Macroglobln_a2,pfam_A2M_N_2,pfam_A-macroglobulin_rcpt-bd,pfam_Netrin_module_non-TIMP,pfam_A2M_N,pfam_Anaphylatoxin/fibulin,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_TIMP-like_OB-fold,superfamily_A-macroglobulin_rcpt-bd,superfamily_Anaphylatoxin_comp_syst,smart_Anaphylatoxin/fibulin,smart_Netrin_module_non-TIMP,pfscan_Anaphylatoxin/fibulin,pfscan_Netrin_domain,prints_Anaphylatoxn_comp_syst_dom	-	no_errors	C5	HGNC	ENSG00000106804				84	0	0	61	5	7.57576
C5	0	genome.wustl.edu	37	9	123782388	123782388	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	123782388	123782388	A	T	SNP	C5	ENST00000223642	human	ensembl	74_37	-1	known	missense	c.1372	p.S458T	1.000	NULL	pfam_A2M_comp,pfam_Macroglobln_a2,pfam_A2M_N_2,pfam_A-macroglobulin_rcpt-bd,pfam_Netrin_module_non-TIMP,pfam_A2M_N,pfam_Anaphylatoxin/fibulin,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_TIMP-like_OB-fold,superfamily_A-macroglobulin_rcpt-bd,superfamily_Anaphylatoxin_comp_syst,smart_Anaphylatoxin/fibulin,smart_Netrin_module_non-TIMP,pfscan_Anaphylatoxin/fibulin,pfscan_Netrin_domain,prints_Anaphylatoxn_comp_syst_dom	-	no_errors	C5	HGNC	ENSG00000106804				149	0	0	111	8	6.72269
GSN	0	genome.wustl.edu	37	9	124081025	124081025	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	124081025	124081025	G	A	SNP	GSN	ENST00000373818	human	ensembl	74_37	+1	known	missense	c.1211	p.G404D	1.000	NULL	pfam_Gelsolin_dom,smart_Villin/Gelsolin,prints_Villin/Gelsolin	-	no_errors	GSN	HGNC	ENSG00000148180				49	0	0	47	6	11.3208
DAB2IP	0	genome.wustl.edu	37	9	124535066	124535066	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	124535066	124535066	C	T	SNP	DAB2IP	ENST00000408936	human	ensembl	74_37	+1	known	silent	c.2259	p.D753	0.992	pfam_DUF3498	pfam_DUF3498,pfam_RasGAP,pfam_C2_dom,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_Pleckstrin_homology,smart_C2_dom,smart_RasGAP,pfscan_Pleckstrin_homology,pfscan_RasGAP	-	no_errors	DAB2IP	HGNC	ENSG00000136848				24	0	0	20	5	20
TTLL11	0	genome.wustl.edu	37	9	124751329	124751329	+	RNA	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	124751329	124751329	G	T	SNP	TTLL11	ENST00000487468	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TTLL11	HGNC	ENSG00000175764				27	0	0	24	5	17.2414
NDUFA8	0	genome.wustl.edu	37	9	124906577	124906577	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	124906577	124906577	G	A	SNP	NDUFA8	ENST00000373768	human	ensembl	74_37	-1	known	silent	c.462	p.I154	0.000	pirsf_NADH_Ub_cplx-1_asu_su-8	pfam_CHCH,pirsf_NADH_Ub_cplx-1_asu_su-8	-	no_errors	NDUFA8	HGNC	ENSG00000119421				104	0	0	68	15	18.0723
RBM18	0	genome.wustl.edu	37	9	125009820	125009820	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	125009820	125009820	G	A	SNP	RBM18	ENST00000417201	human	ensembl	74_37	-1	known	nonsense	c.304	p.R102*	0.995	smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM18	HGNC	ENSG00000119446				67	0	0	53	16	23.1884
OR1L8	0	genome.wustl.edu	37	9	125330036	125330036	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	125330036	125330036	T	C	SNP	OR1L8	ENST00000304865	human	ensembl	74_37	-1	known	missense	c.721	p.T241A	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR1L8	HGNC	ENSG00000171496				58	0	0	40	6	13.0435
OR5C1	0	genome.wustl.edu	37	9	125551853	125551853	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	125551853	125551853	G	A	SNP	OR5C1	ENST00000373680	human	ensembl	74_37	+1	known	silent	c.642	p.T214	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5C1	HGNC	ENSG00000148215				65	0	0	47	5	9.61538
OR5C1	0	genome.wustl.edu	37	9	125551886	125551886	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	125551886	125551886	C	T	SNP	OR5C1	ENST00000373680	human	ensembl	74_37	+1	known	silent	c.675	p.I225	0.001	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5C1	HGNC	ENSG00000148215				57	0	0	46	12	20.6897
OR1K1	0	genome.wustl.edu	37	9	125562695	125562695	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	125562695	125562695	C	G	SNP	OR1K1	ENST00000277309	human	ensembl	74_37	+1	known	missense	c.294	p.C98W	0.982	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR1K1	HGNC	ENSG00000165204				103	0	0	73	26	26.2626
RC3H2	0	genome.wustl.edu	37	9	125617543	125617543	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	125617543	125617543	G	A	SNP	RC3H2	ENST00000357244	human	ensembl	74_37	-1	known	missense	c.2735	p.S912F	1.000	NULL	pfam_Znf_CCCH,smart_Znf_RING,smart_Znf_CCCH,pfscan_Znf_RING	-	no_errors	RC3H2	HGNC	ENSG00000056586				58	0	0	50	6	10.7143
ZBTB6	0	genome.wustl.edu	37	9	125673310	125673310	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	125673310	125673310	G	T	SNP	ZBTB6	ENST00000373659	human	ensembl	74_37	-1	known	missense	c.1042	p.H348N	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB6	HGNC	ENSG00000186130				95	0	0	71	19	21.1111
RABGAP1	0	genome.wustl.edu	37	9	125759568	125759568	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	125759568	125759568	T	C	SNP	RABGAP1	ENST00000373647	human	ensembl	74_37	+1	known	missense	c.1132	p.S378P	1.000	pfam_Kinesin-like	pfam_Rab-GTPase-TBC_dom,pfam_Kinesin-like,pfam_PTB/PI_dom,superfamily_Rab-GTPase-TBC_dom,smart_PTB/PI_dom,smart_Rab-GTPase-TBC_dom,pfscan_PTB/PI_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	RABGAP1	HGNC	ENSG00000011454				59	0	0	61	4	6.15385
RABGAP1	0	genome.wustl.edu	37	9	125836696	125836696	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	125836696	125836696	C	T	SNP	RABGAP1	ENST00000373647	human	ensembl	74_37	+1	known	missense	c.2242	p.L748F	1.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,pfam_Kinesin-like,pfam_PTB/PI_dom,superfamily_Rab-GTPase-TBC_dom,smart_PTB/PI_dom,smart_Rab-GTPase-TBC_dom,pfscan_PTB/PI_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	RABGAP1	HGNC	ENSG00000011454				71	0	0	65	8	10.9589
DENND1A	0	genome.wustl.edu	37	9	126144873	126144873	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	126144873	126144873	C	T	SNP	DENND1A	ENST00000394219	human	ensembl	74_37	-1	known	missense	c.1901	p.R634H	0.010	NULL	pfam_DENN_dom,pfam_dDENN_dom,pfam_uDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND1A	HGNC	ENSG00000119522				55	0	0	43	14	24.5614
DENND1A	0	genome.wustl.edu	37	9	126214597	126214597	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	126214597	126214597	T	C	SNP	DENND1A	ENST00000394219	human	ensembl	74_37	-1	known	silent	c.1161	p.V387	0.656	NULL	pfam_DENN_dom,pfam_dDENN_dom,pfam_uDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND1A	HGNC	ENSG00000119522				85	0	0	62	7	10.1449
NEK6	0	genome.wustl.edu	37	9	127110081	127110081	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	127110081	127110081	G	A	SNP	NEK6	ENST00000373600	human	ensembl	74_37	+1	known	missense	c.913	p.G305R	0.011	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK6	HGNC	ENSG00000119408				133	0	0	126	17	11.8881
NR6A1	0	genome.wustl.edu	37	9	127298343	127298343	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	127298343	127298343	T	C	SNP	NR6A1	ENST00000487099	human	ensembl	74_37	-1	known	missense	c.893	p.Q298R	1.000	superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Str_hrmn_rcpt	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	NR6A1	HGNC	ENSG00000148200				111	0	0	93	22	19.1304
NR6A1	0	genome.wustl.edu	37	9	127316748	127316748	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	127316748	127316748	C	A	SNP	NR6A1	ENST00000487099	human	ensembl	74_37	-1	known	missense	c.244	p.G82W	1.000	pfam_Znf_hrmn_rcpt,smart_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt,prints_Znf_hrmn_rcpt	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	NR6A1	HGNC	ENSG00000148200				103	0	0	113	14	11.0236
RABEPK	0	genome.wustl.edu	37	9	127996243	127996243	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	127996243	127996243	T	G	SNP	RABEPK	ENST00000373538	human	ensembl	74_37	+1	known	missense	c.1103	p.V368G	1.000	NULL	pfam_Kelch_2,pfam_Kelch_1	-	no_errors	RABEPK	HGNC	ENSG00000136933				213	0	0	124	35	22.0126
GAPVD1	0	genome.wustl.edu	37	9	128099736	128099736	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	128099736	128099736	G	A	SNP	GAPVD1	ENST00000394105	human	ensembl	74_37	+1	known	missense	c.2824	p.D942N	1.000	NULL	pfam_RasGAP,pfam_VPS9,superfamily_Rho_GTPase_activation_prot,smart_VPS9_subgr,pfscan_VPS9,pfscan_RasGAP	-	no_errors	GAPVD1	HGNC	ENSG00000165219				75	0	0	80	5	5.88235
MAPKAP1	0	genome.wustl.edu	37	9	128347881	128347881	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	128347881	128347881	C	T	SNP	MAPKAP1	ENST00000265960	human	ensembl	74_37	-1	known	silent	c.624	p.G208	1.000	pfam_SIN1	pfam_SIN1	-	no_errors	MAPKAP1	HGNC	ENSG00000119487				90	0	0	79	8	9.1954
LMX1B	0	genome.wustl.edu	37	9	129458638	129458638	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	129458638	129458638	C	A	SNP	LMX1B	ENST00000355497	human	ensembl	74_37	+1	known	missense	c.1129	p.L377I	1.000	NULL	pfam_Znf_LIM,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeobox_dom,pfscan_Znf_LIM,pfscan_Homeobox_dom	-	no_errors	LMX1B	HGNC	ENSG00000136944				124	1	0.8	123	32	20.6452
RALGPS1	0	genome.wustl.edu	37	9	129740006	129740006	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	129740006	129740006	T	C	SNP	RALGPS1	ENST00000259351	human	ensembl	74_37	+1	known	silent	c.198	p.F66	0.995	pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_RasGRF_CDC25,pfam_Pleckstrin_homology,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_RasGRF_CDC25	-	no_errors	RALGPS1	HGNC	ENSG00000136828				106	0	0	93	10	9.70874
GARNL3	0	genome.wustl.edu	37	9	130073930	130073930	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	130073930	130073930	C	T	SNP	GARNL3	ENST00000373387	human	ensembl	74_37	+1	known	missense	c.235	p.P79S	1.000	NULL	pfam_Citron,pfam_Rap_GAP_dom,smart_Citron,pfscan_Rap_GAP_dom	-	no_errors	GARNL3	HGNC	ENSG00000136895				74	0	0	49	5	9.25926
GARNL3	0	genome.wustl.edu	37	9	130083001	130083001	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	130083001	130083001	A	G	SNP	GARNL3	ENST00000373387	human	ensembl	74_37	+1	known	missense	c.511	p.N171D	1.000	NULL	pfam_Citron,pfam_Rap_GAP_dom,smart_Citron,pfscan_Rap_GAP_dom	-	no_errors	GARNL3	HGNC	ENSG00000136895				71	0	0	35	6	14.6341
RPL12	0	genome.wustl.edu	37	9	130210270	130210270	+	Splice_Site	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	130210270	130210270	T	C	SNP	RPL12	ENST00000361436	human	ensembl	74_37	-1	known	splice_site	c.380-2	e6-2	0.996	-	-	-	no_errors	RPL12	HGNC	ENSG00000197958				46	0	0	36	3	7.69231
LRSAM1	0	genome.wustl.edu	37	9	130219605	130219605	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	130219605	130219605	T	A	SNP	LRSAM1	ENST00000300417	human	ensembl	74_37	+1	known	missense	c.185	p.V62D	1.000	NULL	pfam_Leu-rich_rpt,pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,superfamily_PTS_PEP_utilis_N,smart_Leu-rich_rpt_typical-subtyp,smart_SAM,pfscan_SAM,pfscan_Znf_RING	-	no_errors	LRSAM1	HGNC	ENSG00000148356				37	0	0	32	5	13.5135
LRSAM1	0	genome.wustl.edu	37	9	130265165	130265165	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	130265165	130265165	A	G	SNP	LRSAM1	ENST00000300417	human	ensembl	74_37	+1	known	missense	c.2159	p.Y720C	1.000	NULL	pfam_Leu-rich_rpt,pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,superfamily_PTS_PEP_utilis_N,smart_Leu-rich_rpt_typical-subtyp,smart_SAM,pfscan_SAM,pfscan_Znf_RING	-	no_errors	LRSAM1	HGNC	ENSG00000148356				9	0	0	17	3	15
PTRH1	0	genome.wustl.edu	37	9	130476504	130476504	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	130476504	130476504	C	A	SNP	PTRH1	ENST00000419060	human	ensembl	74_37	-1	known	missense	c.520	p.A174S	0.338	pfam_Pept_tRNA_hydro,superfamily_Pept_tRNA_hydro	pfam_Pept_tRNA_hydro,superfamily_Pept_tRNA_hydro	-	no_errors	PTRH1	HGNC	ENSG00000187024				45	0	0	52	4	7.14286
CDK9	0	genome.wustl.edu	37	9	130550553	130550553	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	130550553	130550553	C	A	SNP	CDK9	ENST00000373265	human	ensembl	74_37	+1	known	missense	c.844	p.L282M	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDK9	HGNC	ENSG00000136807				31	0	0	24	3	11.1111
SWI5	0	genome.wustl.edu	37	9	131038650	131038650	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	131038650	131038650	A	T	SNP	SWI5	ENST00000320188	human	ensembl	74_37	+1	known	missense	c.226	p.I76F	0.000	NULL	pfam_DNA-repair_Swi5	-	no_errors	SWI5	HGNC	ENSG00000175854				23	0	0	17	2	10.5263
MPDZ	0	genome.wustl.edu	37	9	13107034	13107034	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	13107034	13107034	A	G	SNP	MPDZ	ENST00000319217	human	ensembl	74_37	-1	known	missense	c.6143	p.V2048A	0.992	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,pfam_L27_2,superfamily_PDZ,smart_PDZ,pfscan_L27,pfscan_PDZ	-	no_errors	MPDZ	HGNC	ENSG00000107186				217	0	0	156	37	19.171
SLC27A4	0	genome.wustl.edu	37	9	131107478	131107478	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	131107478	131107478	G	A	SNP	SLC27A4	ENST00000300456	human	ensembl	74_37	+1	known	missense	c.206	p.C69Y	1.000	NULL	pfam_AMP-dep_Synth/Lig	-	no_errors	SLC27A4	HGNC	ENSG00000167114				39	0	0	26	7	21.2121
ODF2	0	genome.wustl.edu	37	9	131262534	131262534	+	Nonstop_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	131262534	131262534	A	T	SNP	ODF2	ENST00000434106	human	ensembl	74_37	+1	known	nonstop	c.2490	p.*830C	0.345	NULL	NULL	-	no_errors	ODF2	HGNC	ENSG00000136811				110	0	0	81	24	22.8571
SPTAN1	0	genome.wustl.edu	37	9	131337514	131337514	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	131337514	131337514	C	A	SNP	SPTAN1	ENST00000358161	human	ensembl	74_37	+1	known	missense	c.541	p.L181M	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_EF_hand_dom,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,smart_EF_hand_dom,pfscan_EF_hand_dom,pfscan_SH3_domain,prints_Spectrin_alpha_SH3,prints_SH3_domain	-	no_errors	SPTAN1	HGNC	ENSG00000197694				141	0	0	102	10	8.92857
SPTAN1	0	genome.wustl.edu	37	9	131387430	131387430	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	131387430	131387430	C	A	SNP	SPTAN1	ENST00000358161	human	ensembl	74_37	+1	known	missense	c.6041	p.S2014Y	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_EF_hand_dom,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,smart_EF_hand_dom,pfscan_EF_hand_dom,pfscan_SH3_domain,prints_Spectrin_alpha_SH3,prints_SH3_domain	-	no_errors	SPTAN1	HGNC	ENSG00000197694				72	0	0	56	8	12.5
WDR34	0	genome.wustl.edu	37	9	131399212	131399212	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	131399212	131399212	G	A	SNP	WDR34	ENST00000372715	human	ensembl	74_37	-1	known	missense	c.530	p.A177V	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR34	HGNC	ENSG00000119333				26	0	0	30	4	11.7647
WDR34	0	genome.wustl.edu	37	9	131403003	131403003	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	131403003	131403003	G	A	SNP	WDR34	ENST00000372715	human	ensembl	74_37	-1	known	silent	c.402	p.G134	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR34	HGNC	ENSG00000119333				53	0	0	57	3	5
TBC1D13	0	genome.wustl.edu	37	9	131559484	131559484	+	Silent	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	131559484	131559484	G	T	SNP	TBC1D13	ENST00000372648	human	ensembl	74_37	+1	known	silent	c.534	p.G178	0.577	superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D13	HGNC	ENSG00000107021				61	0	0	49	8	14.0351
C9orf114	0	genome.wustl.edu	37	9	131591016	131591016	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	131591016	131591016	C	T	SNP	C9orf114	ENST00000361256	human	ensembl	74_37	-1	known	missense	c.206	p.R69H	0.001	NULL	pfam_Put_MeTrfase,superfamily_NA-bd_OB-fold	-	no_errors	C9orf114	HGNC	ENSG00000198917				129	0	0	123	15	10.8696
LRRC8A	0	genome.wustl.edu	37	9	131670363	131670363	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	131670363	131670363	C	T	SNP	LRRC8A	ENST00000259324	human	ensembl	74_37	+1	known	missense	c.920	p.T307I	1.000	NULL	pfam_LRR_protein-8_N,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC8A	HGNC	ENSG00000136802				100	0	0	119	19	13.7681
MPDZ	0	genome.wustl.edu	37	9	13168518	13168518	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	13168518	13168518	C	T	SNP	MPDZ	ENST00000319217	human	ensembl	74_37	-1	known	missense	c.3101	p.R1034Q	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,pfam_L27_2,superfamily_PDZ,smart_PDZ,pfscan_L27,pfscan_PDZ	-	no_errors	MPDZ	HGNC	ENSG00000107186				277	0	0	193	55	22.1774
NUP188	0	genome.wustl.edu	37	9	131741566	131741566	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	131741566	131741566	T	C	SNP	NUP188	ENST00000372577	human	ensembl	74_37	+1	known	missense	c.1229	p.V410A	1.000	pfam_Nucleoporin_Nup188	pfam_Nucleoporin_Nup188,superfamily_ARM-type_fold	-	no_errors	NUP188	HGNC	ENSG00000095319				92	0	0	68	11	13.9241
NUP188	0	genome.wustl.edu	37	9	131755596	131755596	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	131755596	131755596	T	C	SNP	NUP188	ENST00000372577	human	ensembl	74_37	+1	known	missense	c.2761	p.F921L	1.000	pfam_Nucleoporin_Nup188,superfamily_ARM-type_fold	pfam_Nucleoporin_Nup188,superfamily_ARM-type_fold	-	no_errors	NUP188	HGNC	ENSG00000095319				97	0	0	72	12	14.2857
CRAT	0	genome.wustl.edu	37	9	131862874	131862874	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	131862874	131862874	G	A	SNP	CRAT	ENST00000318080	human	ensembl	74_37	-1	known	silent	c.900	p.Y300	1.000	pfam_Carn_acyl_trans	pfam_Carn_acyl_trans	-	no_errors	CRAT	HGNC	ENSG00000095321				37	0	0	36	4	10
PPP2R4	0	genome.wustl.edu	37	9	131890312	131890312	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	131890312	131890312	C	G	SNP	PPP2R4	ENST00000452489	human	ensembl	74_37	+1	known	missense	c.286	p.P96A	0.000	pfam_Phstyr_phstse_ac,pirsf_Phstyr_phstse_ac	pfam_Phstyr_phstse_ac,pirsf_Phstyr_phstse_ac	-	no_errors	PPP2R4	HGNC	ENSG00000119383				15	0	0	8	3	27.2727
PPP2R4	0	genome.wustl.edu	37	9	131897123	131897123	+	Silent	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	131897123	131897123	G	T	SNP	PPP2R4	ENST00000452489	human	ensembl	74_37	+1	known	silent	c.615	p.G205	0.995	pfam_Phstyr_phstse_ac,pirsf_Phstyr_phstse_ac	pfam_Phstyr_phstse_ac,pirsf_Phstyr_phstse_ac	-	no_errors	PPP2R4	HGNC	ENSG00000119383				112	1	0.884956	62	14	18.4211
C9orf106	0	genome.wustl.edu	37	9	132084570	132084570	+	RNA	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	132084570	132084570	G	A	SNP	C9orf106	ENST00000316786	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	C9orf106	HGNC	ENSG00000179082				40	0	0	36	4	10
ASB6	0	genome.wustl.edu	37	9	132400113	132400113	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	132400113	132400113	A	G	SNP	ASB6	ENST00000277458	human	ensembl	74_37	-1	known	missense	c.1222	p.Y408H	1.000	pfam_SOCS_C,smart_SOCS_C,pfscan_SOCS_C	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C	-	no_errors	ASB6	HGNC	ENSG00000148331				83	0	0	77	9	10.4651
MPDZ	0	genome.wustl.edu	37	9	13247792	13247792	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	13247792	13247792	G	A	SNP	MPDZ	ENST00000319217	human	ensembl	74_37	-1	known	missense	c.25	p.R9W	1.000	pfam_L27_2,pfscan_L27	pfam_PDZ,pfam_L27_2,superfamily_PDZ,smart_PDZ,pfscan_L27,pfscan_PDZ	-	no_errors	MPDZ	HGNC	ENSG00000107186				310	1	0.321543	229	20	8.03213
PRRX2	0	genome.wustl.edu	37	9	132482979	132482979	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	132482979	132482979	C	T	SNP	PRRX2	ENST00000372469	human	ensembl	74_37	+1	known	silent	c.552	p.I184	0.900	NULL	pfam_Homeobox_dom,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_OAR_dom,pfscan_Homeobox_dom	-	no_errors	PRRX2	HGNC	ENSG00000167157				50	0	0	46	8	14.8148
FUBP3	0	genome.wustl.edu	37	9	133511486	133511486	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	133511486	133511486	G	A	SNP	FUBP3	ENST00000319725	human	ensembl	74_37	+1	known	silent	c.1683	p.T561	0.224	NULL	pfam_KH_dom_type_1,pfam_KH_dom_type_2,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	FUBP3	HGNC	ENSG00000107164				43	0	0	42	14	25
LAMC3	0	genome.wustl.edu	37	9	133901837	133901837	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	133901837	133901837	G	A	SNP	LAMC3	ENST00000361069	human	ensembl	74_37	+1	known	missense	c.539	p.R180H	0.935	pfam_Laminin_N,smart_Laminin_N,pfscan_Laminin_N	pfam_EGF_laminin,pfam_Laminin_N,pfam_Laminin_B_type_IV,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMC3	HGNC	ENSG00000050555				54	0	0	49	17	25.7576
PRRC2B	0	genome.wustl.edu	37	9	134305536	134305536	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	134305536	134305536	C	T	SNP	PRRC2B	ENST00000357304	human	ensembl	74_37	+1	known	missense	c.5	p.S2F	1.000	pfam_BAT2_N	pfam_BAT2_N	-	no_errors	PRRC2B	HGNC	ENSG00000130723				28	0	0	11	4	26.6667
RAPGEF1	0	genome.wustl.edu	37	9	134465325	134465325	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	134465325	134465325	G	A	SNP	RAPGEF1	ENST00000372190	human	ensembl	74_37	-1	known	missense	c.2311	p.R771C	1.000	pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,pfscan_Ras-like_Gua-exchang_fac_N	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RAPGEF1	HGNC	ENSG00000107263				107	0	0	67	13	16.25
NTNG2	0	genome.wustl.edu	37	9	135116397	135116397	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	135116397	135116397	C	T	SNP	NTNG2	ENST00000360670	human	ensembl	74_37	+1	known	silent	c.1341	p.C447	1.000	pfam_EGF_laminin,smart_EGF_laminin,pfscan_EGF_laminin	pfam_Laminin_N,pfam_EGF_laminin,pfam_EGF_extracell,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	NTNG2	HGNC	ENSG00000196358				20	0	0	11	4	26.6667
SETX	0	genome.wustl.edu	37	9	135139591	135139591	+	RNA	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	135139591	135139591	A	G	SNP	SETX	ENST00000477049	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SETX	HGNC	ENSG00000107290				119	0	0	131	9	6.42857
SETX	0	genome.wustl.edu	37	9	135187172	135187172	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	135187172	135187172	G	A	SNP	SETX	ENST00000372169	human	ensembl	74_37	-1	known	silent	c.5346	p.A1782	0.793	NULL	superfamily_P-loop_NTPase	-	no_errors	SETX	HGNC	ENSG00000107290				58	0	0	44	9	16.9811
BARHL1	0	genome.wustl.edu	37	9	135462883	135462883	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	135462883	135462883	G	A	SNP	BARHL1	ENST00000263610	human	ensembl	74_37	+1	known	missense	c.634	p.A212T	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,prints_Homeobox_metazoa,pfscan_Homeobox_dom	-	no_errors	BARHL1	HGNC	ENSG00000125492				13	0	0	17	3	15
GTF3C4	0	genome.wustl.edu	37	9	135554007	135554007	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	135554007	135554007	G	T	SNP	GTF3C4	ENST00000372146	human	ensembl	74_37	+1	known	missense	c.1001	p.G334V	1.000	superfamily_WD40_repeat_dom	superfamily_WD40_repeat_dom	-	no_errors	GTF3C4	HGNC	ENSG00000125484				133	0	0	117	9	7.14286
TSC1	0	genome.wustl.edu	37	9	135772974	135772974	+	Silent	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	135772974	135772974	G	T	SNP	TSC1	ENST00000298552	human	ensembl	74_37	-1	known	silent	c.2649	p.A883	0.409	NULL	pfam_Hamartin,superfamily_ARM-type_fold	-	no_errors	TSC1	HGNC	ENSG00000165699				246	0	0	205	16	7.23982
TSC1	0	genome.wustl.edu	37	9	135786003	135786003	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	135786003	135786003	G	A	SNP	TSC1	ENST00000298552	human	ensembl	74_37	-1	known	silent	c.1218	p.Y406	0.044	pfam_Hamartin	pfam_Hamartin,superfamily_ARM-type_fold	-	no_errors	TSC1	HGNC	ENSG00000165699				186	0	0	165	12	6.77966
GFI1B	0	genome.wustl.edu	37	9	135865239	135865239	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	135865239	135865239	C	T	SNP	GFI1B	ENST00000339463	human	ensembl	74_37	+1	known	silent	c.759	p.C253	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GFI1B	HGNC	ENSG00000165702				30	0	0	28	12	30
GTF3C5	0	genome.wustl.edu	37	9	135932181	135932181	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	135932181	135932181	G	A	SNP	GTF3C5	ENST00000372108	human	ensembl	74_37	+1	known	missense	c.1300	p.G434R	0.994	NULL	pfam_TF_IIIC_su-5	-	no_errors	GTF3C5	HGNC	ENSG00000148308				58	0	0	58	5	7.93651
CEL	0	genome.wustl.edu	37	9	135941940	135941940	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	135941940	135941940	C	T	SNP	CEL	ENST00000372080	human	ensembl	74_37	+1	known	missense	c.571	p.H191Y	1.000	pfam_CarbesteraseB,pfam_AB_hydrolase_3	pfam_CarbesteraseB,pfam_AB_hydrolase_3	-	no_errors	CEL	HGNC	ENSG00000170835				97	0	0	87	6	6.45161
SURF6	0	genome.wustl.edu	37	9	136198743	136198743	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	136198743	136198743	T	C	SNP	SURF6	ENST00000372022	human	ensembl	74_37	-1	known	missense	c.1048	p.I350V	0.949	pfam_Surf6	pfam_Surf6	-	no_errors	SURF6	HGNC	ENSG00000148296				18	0	0	16	3	15.7895
ADAMTSL2	0	genome.wustl.edu	37	9	136402566	136402566	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	136402566	136402566	G	A	SNP	ADAMTSL2	ENST00000393061	human	ensembl	74_37	+1	known	missense	c.457	p.D153N	0.989	superfamily_Thrombospondin_1_rpt	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTSL2	HGNC	ENSG00000197859				76	0	0	85	24	22.0183
ADAMTSL2	0	genome.wustl.edu	37	9	136412226	136412226	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	136412226	136412226	T	C	SNP	ADAMTSL2	ENST00000393061	human	ensembl	74_37	+1	known	missense	c.1157	p.F386S	1.000	pfam_ADAM_spacer1	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTSL2	HGNC	ENSG00000197859				240	0	0	186	49	20.8511
SARDH	0	genome.wustl.edu	37	9	136529132	136529132	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	136529132	136529132	G	A	SNP	SARDH	ENST00000371872	human	ensembl	74_37	-1	known	missense	c.2636	p.S879L	0.996	NULL	pfam_FAD-dep_OxRdtase,pfam_GCV_T_N,pfam_GCV_T_C	-	no_errors	SARDH	HGNC	ENSG00000123453				29	0	0	39	4	9.30233
SARDH	0	genome.wustl.edu	37	9	136555518	136555518	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	136555518	136555518	T	C	SNP	SARDH	ENST00000371872	human	ensembl	74_37	-1	known	missense	c.2053	p.I685V	1.000	pfam_GCV_T_N	pfam_FAD-dep_OxRdtase,pfam_GCV_T_N,pfam_GCV_T_C	-	no_errors	SARDH	HGNC	ENSG00000123453				51	0	0	65	5	7.14286
VAV2	0	genome.wustl.edu	37	9	136650998	136650998	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	136650998	136650998	C	T	SNP	VAV2	ENST00000371850	human	ensembl	74_37	-1	known	missense	c.1432	p.G478S	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,pfam_SH3_2,pfam_CAMSAP_CH,pfam_SH3_domain,pfam_SH2,pfam_CH-domain,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_CH-domain,superfamily_SH3_domain,smart_CH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_SH3_domain,smart_SH2,pfscan_CH-domain,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain,prints_SH2,prints_SH3_domain	-	no_errors	VAV2	HGNC	ENSG00000160293				21	0	0	28	4	12.5
VAV2	0	genome.wustl.edu	37	9	136662845	136662845	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	136662845	136662845	C	T	SNP	VAV2	ENST00000371850	human	ensembl	74_37	-1	known	missense	c.923	p.R308K	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_SH3_2,pfam_CAMSAP_CH,pfam_SH3_domain,pfam_SH2,pfam_CH-domain,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_CH-domain,superfamily_SH3_domain,smart_CH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_SH3_domain,smart_SH2,pfscan_CH-domain,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain,prints_SH2,prints_SH3_domain	-	no_errors	VAV2	HGNC	ENSG00000160293				35	0	0	21	5	19.2308
BRD3	0	genome.wustl.edu	37	9	136901428	136901428	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	136901428	136901428	G	A	SNP	BRD3	ENST00000303407	human	ensembl	74_37	-1	known	silent	c.1662	p.G554	0.999	NULL	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	BRD3	HGNC	ENSG00000169925				60	0	0	68	7	9.33333
BRD3	0	genome.wustl.edu	37	9	136918499	136918499	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	136918499	136918499	C	T	SNP	BRD3	ENST00000303407	human	ensembl	74_37	-1	known	missense	c.101	p.R34H	1.000	superfamily_Bromodomain,smart_Bromodomain	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	BRD3	HGNC	ENSG00000169925				66	0	0	48	9	15.7895
COL5A1	0	genome.wustl.edu	37	9	137591897	137591897	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	137591897	137591897	C	T	SNP	COL5A1	ENST00000371817	human	ensembl	74_37	+1	known	silent	c.420	p.Y140	0.982	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL5A1	HGNC	ENSG00000130635				74	0	0	92	6	6.12245
COL5A1	0	genome.wustl.edu	37	9	137658311	137658311	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	137658311	137658311	T	C	SNP	COL5A1	ENST00000371817	human	ensembl	74_37	+1	known	silent	c.2100	p.G700	0.626	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL5A1	HGNC	ENSG00000130635				57	0	0	44	5	10.2041
COL5A1	0	genome.wustl.edu	37	9	137707450	137707450	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	137707450	137707450	G	C	SNP	COL5A1	ENST00000371817	human	ensembl	74_37	+1	known	missense	c.4043	p.G1348A	1.000	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL5A1	HGNC	ENSG00000130635				32	0	0	23	7	23.3333
PPP1R26	0	genome.wustl.edu	37	9	138377887	138377887	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	138377887	138377887	C	T	SNP	PPP1R26	ENST00000356818	human	ensembl	74_37	+1	known	missense	c.1531	p.L511F	0.000	NULL	NULL	-	no_errors	PPP1R26	HGNC	ENSG00000196422				68	0	0	61	8	11.5942
LCN1	0	genome.wustl.edu	37	9	138413364	138413364	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	138413364	138413364	C	T	SNP	LCN1	ENST00000263598	human	ensembl	74_37	+1	known	silent	c.21	p.A7	0.017	NULL	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_von_Ebner_gland	-	no_errors	LCN1	HGNC	ENSG00000160349				45	0	0	30	5	14.2857
KCNT1	0	genome.wustl.edu	37	9	138594154	138594154	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	138594154	138594154	C	T	SNP	KCNT1	ENST00000298480	human	ensembl	74_37	+1	known	missense	c.50	p.A17V	0.030	NULL	pfam_K_chnl_Ca-activ_BK_asu,pfam_2pore_dom_K_chnl_dom	-	no_errors	KCNT1	HGNC	ENSG00000107147				32	0	0	37	8	17.7778
CAMSAP1	0	genome.wustl.edu	37	9	138713275	138713275	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	138713275	138713275	G	A	SNP	CAMSAP1	ENST00000409386	human	ensembl	74_37	-1	known	missense	c.3265	p.P1089S	1.000	NULL	pfam_CKK_domain,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_PRC_barrel-like,superfamily_CH-domain	-	no_errors	CAMSAP1	HGNC	ENSG00000130559				70	0	0	58	10	14.7059
CAMSAP1	0	genome.wustl.edu	37	9	138713714	138713714	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	138713714	138713714	C	T	SNP	CAMSAP1	ENST00000409386	human	ensembl	74_37	-1	known	silent	c.2826	p.R942	0.005	NULL	pfam_CKK_domain,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_PRC_barrel-like,superfamily_CH-domain	-	no_errors	CAMSAP1	HGNC	ENSG00000130559				144	0	0	133	43	24.4318
PMPCA	0	genome.wustl.edu	37	9	139306576	139306576	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	139306576	139306576	A	G	SNP	PMPCA	ENST00000371717	human	ensembl	74_37	+1	known	missense	c.199	p.T67A	1.000	superfamily_Metalloenz_LuxS/M16	pfam_Pept_M16_N,pfam_Peptidase_M16_C,superfamily_Metalloenz_LuxS/M16	-	no_errors	PMPCA	HGNC	ENSG00000165688				144	0	0	115	8	6.50407
INPP5E	0	genome.wustl.edu	37	9	139326422	139326422	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	139326422	139326422	C	T	SNP	INPP5E	ENST00000371712	human	ensembl	74_37	-1	known	missense	c.1403	p.R468H	0.999	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc	-	no_errors	INPP5E	HGNC	ENSG00000148384				42	0	0	33	9	21.4286
NOTCH1	0	genome.wustl.edu	37	9	139413179	139413179	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	139413179	139413179	G	A	SNP	NOTCH1	ENST00000277541	human	ensembl	74_37	-1	known	silent	c.963	p.C321	0.955	pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,pfam_EGF_extracell,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pirsf_Notch,pfscan_EG-like_dom	pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,pfam_Ankyrin_rpt,pfam_EGF_extracell,pfam_Notch_NOD_dom,pfam_DUF3454_notch,pfam_Notch_NODP_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Notch_dom,smart_Ankyrin_rpt,pirsf_Notch,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom,prints_Notch_1,prints_Notch_dom	-	no_errors	NOTCH1	HGNC	ENSG00000148400				54	0	0	60	5	7.69231
LCN10	0	genome.wustl.edu	37	9	139635324	139635324	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	139635324	139635324	G	A	SNP	LCN10	ENST00000497771	human	ensembl	74_37	-1	known	missense	c.439	p.R147C	0.826	superfamily_Calycin-like	superfamily_Calycin-like	-	no_errors	LCN10	HGNC	ENSG00000187922				40	0	0	33	4	10.8108
EDF1	0	genome.wustl.edu	37	9	139757745	139757745	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	139757745	139757745	C	T	SNP	EDF1	ENST00000224073	human	ensembl	74_37	-1	known	missense	c.286	p.A96T	1.000	pfam_Cro/C1-type_HTH,superfamily_Lambda_DNA-bd_dom,smart_Cro/C1-type_HTH,pfscan_Cro/C1-type_HTH	pfam_MBF1_N,pfam_Cro/C1-type_HTH,superfamily_Lambda_DNA-bd_dom,smart_Cro/C1-type_HTH,pfscan_Cro/C1-type_HTH	-	no_errors	EDF1	HGNC	ENSG00000107223				58	0	0	40	12	23.0769
LCN12	0	genome.wustl.edu	37	9	139847450	139847450	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	139847450	139847450	G	A	SNP	LCN12	ENST00000371633	human	ensembl	74_37	+1	known	missense	c.221	p.G74D	0.001	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_PstgldnD_synth,prints_N_gelatinase	-	no_errors	LCN12	HGNC	ENSG00000184925				135	0	0	127	7	5.22388
FUT7	0	genome.wustl.edu	37	9	139925299	139925299	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	139925299	139925299	A	G	SNP	FUT7	ENST00000314412	human	ensembl	74_37	-1	known	missense	c.892	p.F298L	0.998	pfam_Glyco_trans_10	pfam_Glyco_trans_10	-	no_errors	FUT7	HGNC	ENSG00000180549				36	0	0	40	4	9.09091
GRIN1	0	genome.wustl.edu	37	9	140055611	140055611	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	140055611	140055611	T	C	SNP	GRIN1	ENST00000371561	human	ensembl	74_37	+1	known	missense	c.1301	p.V434A	1.000	smart_Iontro_glu_rcpt	pfam_Iontro_glu_rcpt,pfam_ANF_lig-bd_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_CaM-bd_C0_NMDA_rcpt_NR1,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN1	HGNC	ENSG00000176884				22	0	0	25	3	10.7143
ANAPC2	0	genome.wustl.edu	37	9	140082263	140082263	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	140082263	140082263	C	T	SNP	ANAPC2	ENST00000323927	human	ensembl	74_37	-1	known	missense	c.410	p.R137H	0.990	NULL	pfam_Cullin_N,pfam_APC_su2_C,superfamily_Cullin_homology,smart_Cullin_homology,pfscan_Cullin_homology	-	no_errors	ANAPC2	HGNC	ENSG00000176248				89	0	0	92	13	12.381
SLC34A3	0	genome.wustl.edu	37	9	140127157	140127157	+	Splice_Site	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	140127157	140127157	T	C	SNP	SLC34A3	ENST00000361134	human	ensembl	74_37	+1	known	splice_site	c.304+2	e3+2	1.000	-	-	-	no_errors	SLC34A3	HGNC	ENSG00000198569				75	0	0	69	5	6.75676
NELFB	0	genome.wustl.edu	37	9	140166990	140166990	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	140166990	140166990	C	A	SNP	NELFB	ENST00000343053	human	ensembl	74_37	+1	known	missense	c.1519	p.L507I	0.919	pfam_COBRA1	pfam_COBRA1	-	no_errors	NELFB	HGNC	ENSG00000188986				20	0	0	23	2	8
NSMF	0	genome.wustl.edu	37	9	140347525	140347525	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	140347525	140347525	C	T	SNP	NSMF	ENST00000371475	human	ensembl	74_37	-1	known	missense	c.1030	p.V344M	0.007	NULL	superfamily_P-loop_NTPase	-	no_errors	NSMF	HGNC	ENSG00000165802				50	0	0	53	5	8.62069
ZMYND19	0	genome.wustl.edu	37	9	140476996	140476996	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	140476996	140476996	C	T	SNP	ZMYND19	ENST00000298585	human	ensembl	74_37	-1	known	silent	c.683	p.*228	1.000	NULL	pfam_Znf_MYND,pfscan_Znf_MYND	-	no_errors	ZMYND19	HGNC	ENSG00000165724				43	0	0	50	5	9.09091
ZMYND19	0	genome.wustl.edu	37	9	140477035	140477035	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	140477035	140477035	C	T	SNP	ZMYND19	ENST00000298585	human	ensembl	74_37	-1	known	missense	c.644	p.R215K	1.000	NULL	pfam_Znf_MYND,pfscan_Znf_MYND	-	no_errors	ZMYND19	HGNC	ENSG00000165724				55	0	0	61	5	7.57576
ARRDC1	0	genome.wustl.edu	37	9	140507931	140507931	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	140507931	140507931	G	A	SNP	ARRDC1	ENST00000371421	human	ensembl	74_37	+1	known	silent	c.249	p.E83	0.707	pfam_Arrestin-like_N,superfamily_Ig_E-set	pfam_Arrestin-like_N,pfam_Arrestin_C-like,superfamily_Ig_E-set	-	no_errors	ARRDC1	HGNC	ENSG00000197070				24	0	0	15	4	21.0526
ARRDC1	0	genome.wustl.edu	37	9	140509383	140509383	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	140509383	140509383	G	A	SNP	ARRDC1	ENST00000371421	human	ensembl	74_37	+1	known	missense	c.1168	p.G390R	0.603	NULL	pfam_Arrestin-like_N,pfam_Arrestin_C-like,superfamily_Ig_E-set	-	no_errors	ARRDC1	HGNC	ENSG00000197070				88	0	0	79	8	9.1954
EHMT1	0	genome.wustl.edu	37	9	140671153	140671153	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	140671153	140671153	C	T	SNP	EHMT1	ENST00000460843	human	ensembl	74_37	+1	known	silent	c.1875	p.S625	1.000	NULL	pfam_Ankyrin_rpt,pfam_SET_dom,pfam_Pre-SET_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SET_dom,pfscan_Pre-SET_dom,prints_Ankyrin_rpt	-	no_errors	EHMT1	HGNC	ENSG00000181090				91	0	0	86	7	7.52688
EHMT1	0	genome.wustl.edu	37	9	140707926	140707926	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	140707926	140707926	T	C	SNP	EHMT1	ENST00000460843	human	ensembl	74_37	+1	known	missense	c.3124	p.S1042P	0.792	pfam_Pre-SET_dom,smart_Pre-SET_Zn-bd_sub	pfam_Ankyrin_rpt,pfam_SET_dom,pfam_Pre-SET_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SET_dom,pfscan_Pre-SET_dom,prints_Ankyrin_rpt	-	no_errors	EHMT1	HGNC	ENSG00000181090				30	0	0	34	2	5.55556
MIR602	0	genome.wustl.edu	37	9	140732894	140732894	+	RNA	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	140732894	140732894	C	T	SNP	MIR602	ENST00000384960	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MIR602	HGNC	ENSG00000207693				112	0	0	113	8	6.61157
CACNA1B	0	genome.wustl.edu	37	9	140948380	140948380	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	140948380	140948380	C	T	SNP	CACNA1B	ENST00000371355	human	ensembl	74_37	+1	known	missense	c.3893	p.A1298V	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_hand_dom,prints_VDCCAlpha1,prints_VDCC_N_a1su,prints_PKD_2	-	no_errors	CACNA1B	HGNC	ENSG00000148408				214	0	0	191	19	9.04762
FREM1	0	genome.wustl.edu	37	9	14756389	14756389	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	14756389	14756389	A	G	SNP	FREM1	ENST00000380881	human	ensembl	74_37	-1	known	missense	c.5393	p.L1798P	1.000	pfam_Calx_beta	pfam_C-type_lectin,pfam_Calx_beta,superfamily_C-type_lectin_fold,superfamily_Cadherin-like,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	FREM1	HGNC	ENSG00000164946				20	0	0	17	6	26.087
FREM1	0	genome.wustl.edu	37	9	14842570	14842570	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	14842570	14842570	G	A	SNP	FREM1	ENST00000380881	human	ensembl	74_37	-1	known	silent	c.1485	p.F495	0.997	NULL	pfam_C-type_lectin,pfam_Calx_beta,superfamily_C-type_lectin_fold,superfamily_Cadherin-like,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	FREM1	HGNC	ENSG00000164946				135	1	0.735294	125	7	5.30303
CBWD1	0	genome.wustl.edu	37	9	164038	164038	+	Splice_Site	SNP	C	C	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	164038	164038	C	G	SNP	CBWD1	ENST00000356521	human	ensembl	74_37	-1	known	splice_site	c.431-1	e5-1	1.000	-	-	-	no_errors	CBWD1	HGNC	ENSG00000172785				289	0	0	195	11	5.33981
BNC2	0	genome.wustl.edu	37	9	16583063	16583063	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	16583063	16583063	T	C	SNP	BNC2	ENST00000380672	human	ensembl	74_37	-1	known	silent	c.351	p.V117	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	BNC2	HGNC	ENSG00000173068				139	0	0	135	13	8.78378
CNTLN	0	genome.wustl.edu	37	9	17394904	17394904	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	17394904	17394904	C	T	SNP	CNTLN	ENST00000380647	human	ensembl	74_37	+1	known	nonsense	c.2452	p.R818*	0.011	NULL	superfamily_Prefoldin	-	no_errors	CNTLN	HGNC	ENSG00000044459				78	0	0	51	10	16.3934
SH3GL2	0	genome.wustl.edu	37	9	17789413	17789413	+	Silent	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	17789413	17789413	T	G	SNP	SH3GL2	ENST00000380607	human	ensembl	74_37	+1	known	silent	c.489	p.G163	0.065	pfam_BAR_dom,pfam_BAR_dom-cont,smart_BAR_dom,pfscan_BAR_dom	pfam_BAR_dom,pfam_SH3_2,pfam_SH3_domain,pfam_BAR_dom-cont,superfamily_SH3_domain,smart_BAR_dom,smart_SH3_domain,pfscan_BAR_dom,pfscan_SH3_domain,prints_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SH3GL2	HGNC	ENSG00000107295				112	1	0.884956	81	5	5.81395
ADAMTSL1	0	genome.wustl.edu	37	9	18504839	18504839	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	18504839	18504839	G	A	SNP	ADAMTSL1	ENST00000327883	human	ensembl	74_37	+1	known	missense	c.76	p.A26T	0.994	NULL	pfam_Thrombospondin_1_rpt,pfam_ADAM_spacer1,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_Thrombospondin_1_rpt	-	no_errors	ADAMTSL1	HGNC	ENSG00000178031				117	0	0	105	11	9.48276
ADAMTSL1	0	genome.wustl.edu	37	9	18684731	18684731	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	18684731	18684731	G	A	SNP	ADAMTSL1	ENST00000327883	human	ensembl	74_37	+1	known	missense	c.1507	p.A503T	1.000	NULL	pfam_Thrombospondin_1_rpt,pfam_ADAM_spacer1,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_Thrombospondin_1_rpt	-	no_errors	ADAMTSL1	HGNC	ENSG00000178031				37	0	0	35	3	7.89474
ADAMTSL1	0	genome.wustl.edu	37	9	18826377	18826377	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	18826377	18826377	T	C	SNP	ADAMTSL1	ENST00000388710	human	ensembl	74_37	+1	known	missense	c.133	p.S45P	0.999	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	ADAMTSL1	HGNC	ENSG00000178031				34	0	0	28	3	9.67742
FAM154A	0	genome.wustl.edu	37	9	18928404	18928404	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	18928404	18928404	G	A	SNP	FAM154A	ENST00000380534	human	ensembl	74_37	-1	known	silent	c.1071	p.P357	0.242	NULL	NULL	-	no_errors	FAM154A	HGNC	ENSG00000155875				61	0	0	52	15	22.3881
FAM154A	0	genome.wustl.edu	37	9	18941824	18941824	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	18941824	18941824	G	A	SNP	FAM154A	ENST00000380534	human	ensembl	74_37	-1	known	missense	c.232	p.P78S	1.000	NULL	NULL	-	no_errors	FAM154A	HGNC	ENSG00000155875				106	0	0	84	9	9.67742
SMARCA2	0	genome.wustl.edu	37	9	2039604	2039604	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	2039604	2039604	G	A	SNP	SMARCA2	ENST00000349721	human	ensembl	74_37	+1	known	missense	c.494	p.S165N	1.000	NULL	pfam_SNF2_N,pfam_Bromodomain,pfam_BRK_domain,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,pfam_Gln-Leu-Gln_QLQ,superfamily_P-loop_NTPase,superfamily_Bromodomain,superfamily_RNaseH-like_dom,smart_Gln-Leu-Gln_QLQ,smart_HAS_subgr,smart_BRK_domain,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Bromodomain,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	SMARCA2	HGNC	ENSG00000080503				100	0	0	86	8	8.51064
SMARCA2	0	genome.wustl.edu	37	9	2039854	2039854	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	2039854	2039854	G	A	SNP	SMARCA2	ENST00000349721	human	ensembl	74_37	+1	known	silent	c.744	p.T248	0.015	NULL	pfam_SNF2_N,pfam_Bromodomain,pfam_BRK_domain,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,pfam_Gln-Leu-Gln_QLQ,superfamily_P-loop_NTPase,superfamily_Bromodomain,superfamily_RNaseH-like_dom,smart_Gln-Leu-Gln_QLQ,smart_HAS_subgr,smart_BRK_domain,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Bromodomain,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	SMARCA2	HGNC	ENSG00000080503				35	0	0	32	11	25.5814
FOCAD	0	genome.wustl.edu	37	9	20881935	20881935	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	20881935	20881935	C	T	SNP	FOCAD	ENST00000338382	human	ensembl	74_37	+1	known	missense	c.2383	p.H795Y	1.000	superfamily_ARM-type_fold	pfam_DUF3028,pfam_DUF3730,superfamily_ARM-type_fold	-	no_errors	FOCAD	HGNC	ENSG00000188352				146	1	0.680272	121	12	9.02256
IFNA8	0	genome.wustl.edu	37	9	21409397	21409397	+	Silent	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	21409397	21409397	T	A	SNP	IFNA8	ENST00000380205	human	ensembl	74_37	+1	known	silent	c.222	p.A74	0.984	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta	-	no_errors	IFNA8	HGNC	ENSG00000120242				126	0	0	96	14	12.7273
IFNE	0	genome.wustl.edu	37	9	21481336	21481336	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	21481336	21481336	G	T	SNP	IFNE	ENST00000448696	human	ensembl	74_37	-1	known	missense	c.358	p.L120I	0.705	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta	-	no_errors	IFNE	HGNC	ENSG00000184995				227	1	0.438596	155	20	11.4286
SMARCA2	0	genome.wustl.edu	37	9	2170423	2170423	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	2170423	2170423	A	G	SNP	SMARCA2	ENST00000349721	human	ensembl	74_37	+1	known	missense	c.4204	p.N1402D	1.000	superfamily_Bromodomain,smart_Bromodomain	pfam_SNF2_N,pfam_Bromodomain,pfam_BRK_domain,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,pfam_Gln-Leu-Gln_QLQ,superfamily_P-loop_NTPase,superfamily_Bromodomain,superfamily_RNaseH-like_dom,smart_Gln-Leu-Gln_QLQ,smart_HAS_subgr,smart_BRK_domain,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Bromodomain,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	SMARCA2	HGNC	ENSG00000080503				59	0	0	50	5	9.09091
DMRTA1	0	genome.wustl.edu	37	9	22447088	22447088	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	22447088	22447088	C	G	SNP	DMRTA1	ENST00000325870	human	ensembl	74_37	+1	known	missense	c.24	p.S8R	0.292	NULL	pfam_DM_DNA-bd,pfam_DMA,superfamily_DM_DNA-bd,superfamily_UBA-like,smart_DM_DNA-bd,pfscan_DM_DNA-bd	-	no_errors	DMRTA1	HGNC	ENSG00000176399				15	0	0	13	4	23.5294
VLDLR	0	genome.wustl.edu	37	9	2635505	2635505	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	2635505	2635505	T	C	SNP	VLDLR	ENST00000382100	human	ensembl	74_37	+1	known	silent	c.135	p.C45	0.987	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,prints_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EGF-like_Ca-bd_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_Growth_fac_rcpt_N_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	VLDLR	HGNC	ENSG00000147852				191	1	0.520833	138	12	8
VLDLR	0	genome.wustl.edu	37	9	2648781	2648781	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	2648781	2648781	T	C	SNP	VLDLR	ENST00000382100	human	ensembl	74_37	+1	known	missense	c.2075	p.I692T	1.000	pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EGF-like_Ca-bd_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_Growth_fac_rcpt_N_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	VLDLR	HGNC	ENSG00000147852				84	0	0	70	8	10.2564
CAAP1	0	genome.wustl.edu	37	9	26842414	26842414	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	26842414	26842414	G	T	SNP	CAAP1	ENST00000333916	human	ensembl	74_37	-1	known	missense	c.971	p.P324H	1.000	NULL	NULL	-	no_errors	CAAP1	HGNC	ENSG00000120159				145	0	0	91	21	18.75
PLAA	0	genome.wustl.edu	37	9	26919405	26919405	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	26919405	26919405	A	T	SNP	PLAA	ENST00000397292	human	ensembl	74_37	-1	known	missense	c.1320	p.N440K	1.000	pfam_PLAA_fam_Ub-bd_PFU	pfam_PUL,pfam_WD40_repeat,pfam_PLAA_fam_Ub-bd_PFU,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	PLAA	HGNC	ENSG00000137055				275	0	0	158	13	7.60234
PLAA	0	genome.wustl.edu	37	9	26935065	26935065	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	26935065	26935065	A	G	SNP	PLAA	ENST00000397292	human	ensembl	74_37	-1	known	missense	c.289	p.F97L	0.999	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_PUL,pfam_WD40_repeat,pfam_PLAA_fam_Ub-bd_PFU,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	PLAA	HGNC	ENSG00000137055				109	0	0	70	5	6.66667
LRRC19	0	genome.wustl.edu	37	9	26997993	26997993	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	26997993	26997993	A	G	SNP	LRRC19	ENST00000380055	human	ensembl	74_37	-1	known	missense	c.328	p.Y110H	0.001	smart_Leu-rich_rpt_typical-subtyp	smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	LRRC19	HGNC	ENSG00000184434				171	0	0	118	15	11.2782
KCNV2	0	genome.wustl.edu	37	9	2718173	2718173	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	2718173	2718173	A	T	SNP	KCNV2	ENST00000382082	human	ensembl	74_37	+1	known	missense	c.434	p.Q145L	0.000	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,prints_K_chnl_volt-dep_Kv9	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,prints_K_chnl,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCNV2	HGNC	ENSG00000168263				23	0	0	28	4	12.5
KCNV2	0	genome.wustl.edu	37	9	2718962	2718962	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	2718962	2718962	A	G	SNP	KCNV2	ENST00000382082	human	ensembl	74_37	+1	known	missense	c.1223	p.Y408C	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,prints_K_chnl,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCNV2	HGNC	ENSG00000168263				36	0	0	41	3	6.81818
KCNV2	0	genome.wustl.edu	37	9	2729454	2729454	+	Silent	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	2729454	2729454	C	A	SNP	KCNV2	ENST00000382082	human	ensembl	74_37	+1	known	silent	c.1365	p.I455	1.000	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,prints_K_chnl,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCNV2	HGNC	ENSG00000168263				78	0	0	74	5	6.32911
MOB3B	0	genome.wustl.edu	37	9	27455355	27455355	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	27455355	27455355	A	G	SNP	MOB3B	ENST00000262244	human	ensembl	74_37	-1	known	missense	c.194	p.V65A	1.000	pfam_Mob1_phocein,superfamily_Mob1_phocein	pfam_Mob1_phocein,superfamily_Mob1_phocein	-	no_errors	MOB3B	HGNC	ENSG00000120162				104	0	0	91	7	7.14286
ACO1	0	genome.wustl.edu	37	9	32418352	32418352	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	32418352	32418352	G	A	SNP	ACO1	ENST00000309951	human	ensembl	74_37	+1	known	missense	c.501	p.M167I	1.000	pfam_Acoase/IPM_deHydtase_lsu_aba,superfamily_Acoase/IPM_deHydtase_lsu_aba,prints_Acoase/IPM_deHydtase_lsu_aba,tigrfam_Aconitase/Fe_reg_prot_2	pfam_Acoase/IPM_deHydtase_lsu_aba,pfam_AconitaseA/IPMdHydase_ssu_swvl,superfamily_Acoase/IPM_deHydtase_lsu_aba,superfamily_Aconitase/3IPM_dehydase_swvl,prints_Acoase/IPM_deHydtase_lsu_aba,tigrfam_Aconitase/Fe_reg_prot_2	-	no_errors	ACO1	HGNC	ENSG00000122729				92	0	0	83	6	6.74157
TAF1L	0	genome.wustl.edu	37	9	32630784	32630784	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	32630784	32630784	A	G	SNP	TAF1L	ENST00000242310	human	ensembl	74_37	-1	known	silent	c.4794	p.S1598	0.999	pirsf_TAF1_animal,pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	TAF1L	HGNC	ENSG00000122728				127	0	0	93	9	8.82353
TAF1L	0	genome.wustl.edu	37	9	32633593	32633593	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	32633593	32633593	A	T	SNP	TAF1L	ENST00000242310	human	ensembl	74_37	-1	known	missense	c.1985	p.I662N	1.000	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	TAF1L	HGNC	ENSG00000122728				130	1	0.763359	110	8	6.77966
TAF1L	0	genome.wustl.edu	37	9	32634929	32634929	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	32634929	32634929	C	T	SNP	TAF1L	ENST00000242310	human	ensembl	74_37	-1	known	missense	c.649	p.A217T	0.998	pirsf_TAF1_animal	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	TAF1L	HGNC	ENSG00000122728				151	0	0	136	13	8.72483
CHMP5	0	genome.wustl.edu	37	9	33271164	33271164	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	33271164	33271164	A	G	SNP	CHMP5	ENST00000223500	human	ensembl	74_37	+1	known	silent	c.330	p.K110	0.913	pfam_Snf7	pfam_Snf7	-	no_errors	CHMP5	HGNC	ENSG00000086065				77	0	0	57	4	6.55738
AQP7	0	genome.wustl.edu	37	9	33386120	33386120	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	33386120	33386120	G	A	SNP	AQP7	ENST00000297988	human	ensembl	74_37	-1	known	silent	c.480	p.T160	1.000	pfam_MIP,superfamily_Aquaporin-like,tigrfam_MIP	pfam_MIP,superfamily_Aquaporin-like,prints_MIP,prints_Aquaporin_3,tigrfam_MIP	-	no_errors	AQP7	HGNC	ENSG00000165269				92	0	0	80	5	5.88235
NOL6	0	genome.wustl.edu	37	9	33463366	33463366	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	33463366	33463366	C	T	SNP	NOL6	ENST00000297990	human	ensembl	74_37	-1	known	missense	c.3068	p.R1023H	0.984	pfam_Nrap	pfam_Nrap	-	no_errors	NOL6	HGNC	ENSG00000165271				39	0	0	28	3	9.67742
NOL6	0	genome.wustl.edu	37	9	33468037	33468037	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	33468037	33468037	T	C	SNP	NOL6	ENST00000297990	human	ensembl	74_37	-1	known	missense	c.1415	p.H472R	0.997	pfam_Nrap	pfam_Nrap	-	no_errors	NOL6	HGNC	ENSG00000165271				106	0	0	129	11	7.85714
PTENP1	0	genome.wustl.edu	37	9	33675762	33675762	+	RNA	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	33675762	33675762	A	G	SNP	PTENP1	ENST00000532280	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.999	-	-	-	no_errors	PTENP1	HGNC	ENSG00000237984				127	0	0	75	10	11.7647
PTENP1	0	genome.wustl.edu	37	9	33676298	33676298	+	RNA	SNP	G	G	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	33676298	33676298	G	C	SNP	PTENP1	ENST00000532280	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	PTENP1	HGNC	ENSG00000237984				110	0	0	77	22	22.2222
KIF24	0	genome.wustl.edu	37	9	34256008	34256008	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	34256008	34256008	T	C	SNP	KIF24	ENST00000379166	human	ensembl	74_37	-1	known	silent	c.3597	p.V1199	0.002	NULL	pfam_Kinesin_motor_dom,pfam_SAM_type1,superfamily_P-loop_NTPase,superfamily_SAM/pointed,smart_Kinesin_motor_dom,pfscan_SAM,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF24	HGNC	ENSG00000186638				91	0	0	98	8	7.54717
NUDT2	0	genome.wustl.edu	37	9	34343290	34343290	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	34343290	34343290	A	G	SNP	NUDT2	ENST00000346365	human	ensembl	74_37	+1	known	missense	c.296	p.K99R	1.000	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like,prints_Tetra_PHTase	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like,prints_Tetra_PHTase	-	no_errors	NUDT2	HGNC	ENSG00000164978				112	0	0	89	6	6.31579
KIAA1161	0	genome.wustl.edu	37	9	34371038	34371038	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	34371038	34371038	C	T	SNP	KIAA1161	ENST00000297625	human	ensembl	74_37	-1	known	missense	c.1802	p.R601H	1.000	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF	-	no_errors	KIAA1161	HGNC	ENSG00000164976				34	0	0	37	5	11.9048
KIAA1161	0	genome.wustl.edu	37	9	34372048	34372048	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	34372048	34372048	A	G	SNP	KIAA1161	ENST00000297625	human	ensembl	74_37	-1	known	silent	c.792	p.R264	0.999	NULL	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF	-	no_errors	KIAA1161	HGNC	ENSG00000164976				37	0	0	32	14	30.4348
GALT	0	genome.wustl.edu	37	9	34648762	34648762	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	34648762	34648762	C	T	SNP	GALT	ENST00000378842	human	ensembl	74_37	+1	known	missense	c.691	p.R231C	1.000	pfam_GalP_Utransf_C,superfamily_HIT-like,pirsf_GalP_UDPtransf1,tigrfam_GalP_UDPtransf1	pfam_GalP_Utransf_N,pfam_GalP_Utransf_C,superfamily_HIT-like,pirsf_GalP_UDPtransf1,tigrfam_GalP_UDPtransf1	-	no_errors	GALT	HGNC	ENSG00000213930				191	0	0	180	13	6.73575
KIAA1045	0	genome.wustl.edu	37	9	34971621	34971621	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	34971621	34971621	G	A	SNP	KIAA1045	ENST00000242315	human	ensembl	74_37	+1	known	missense	c.326	p.R109Q	0.998	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	KIAA1045	HGNC	ENSG00000122733				177	0	0	170	15	8.10811
KIAA1045	0	genome.wustl.edu	37	9	34978047	34978047	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	34978047	34978047	T	A	SNP	KIAA1045	ENST00000242315	human	ensembl	74_37	+1	known	missense	c.1142	p.V381D	0.972	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	KIAA1045	HGNC	ENSG00000122733				143	0	0	124	9	6.76692
C9orf131	0	genome.wustl.edu	37	9	35043238	35043238	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	35043238	35043238	C	T	SNP	C9orf131	ENST00000312292	human	ensembl	74_37	+1	known	silent	c.612	p.S204	0.971	NULL	NULL	-	no_errors	C9orf131	HGNC	ENSG00000174038				118	0	0	133	10	6.99301
FANCG	0	genome.wustl.edu	37	9	35078616	35078616	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	35078616	35078616	C	T	SNP	FANCG	ENST00000378643	human	ensembl	74_37	-1	known	missense	c.293	p.R98Q	0.005	superfamily_Sig_transdc_His_kin_Hpt_dom	superfamily_Sig_transdc_His_kin_Hpt_dom,smart_TPR_repeat	-	no_errors	FANCG	HGNC	ENSG00000221829				41	0	0	38	8	17.3913
PIGO	0	genome.wustl.edu	37	9	35091255	35091255	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	35091255	35091255	T	A	SNP	PIGO	ENST00000341666	human	ensembl	74_37	-1	known	missense	c.2629	p.I877L	0.959	NULL	pfam_Phosphodiest/P_Trfase,pfam_Metalloenzyme,pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	-	no_errors	PIGO	HGNC	ENSG00000165282				66	0	0	59	4	6.34921
FAM214B	0	genome.wustl.edu	37	9	35107420	35107420	+	Silent	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	35107420	35107420	G	T	SNP	FAM214B	ENST00000322813	human	ensembl	74_37	-1	known	silent	c.852	p.P284	0.995	NULL	NULL	-	no_errors	FAM214B	HGNC	ENSG00000005238				208	0	0	174	22	11.2245
FAM214B	0	genome.wustl.edu	37	9	35107652	35107652	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	35107652	35107652	T	A	SNP	FAM214B	ENST00000322813	human	ensembl	74_37	-1	known	missense	c.620	p.N207I	1.000	NULL	NULL	-	no_errors	FAM214B	HGNC	ENSG00000005238				65	0	0	74	4	5.12821
UNC13B	0	genome.wustl.edu	37	9	35380473	35380473	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	35380473	35380473	C	T	SNP	UNC13B	ENST00000378496	human	ensembl	74_37	+1	known	silent	c.1965	p.C655	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_Munc13_subgr_dom-2,pfam_Ca-dep_secretion_activator,pfam_C2_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_dom,smart_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13B	HGNC	ENSG00000198722				76	0	0	57	7	10.9375
UNC13B	0	genome.wustl.edu	37	9	35382434	35382434	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	35382434	35382434	C	T	SNP	UNC13B	ENST00000378496	human	ensembl	74_37	+1	known	missense	c.2489	p.A830V	1.000	NULL	pfam_Munc13_subgr_dom-2,pfam_Ca-dep_secretion_activator,pfam_C2_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_dom,smart_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13B	HGNC	ENSG00000198722				173	0	0	139	12	7.94702
RUSC2	0	genome.wustl.edu	37	9	35547295	35547295	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	35547295	35547295	C	T	SNP	RUSC2	ENST00000361226	human	ensembl	74_37	+1	known	silent	c.777	p.S259	0.002	NULL	pfam_Run,pfam_SH3_2,superfamily_SH3_domain,smart_Run,smart_SH3_domain,pfscan_Run,pfscan_SH3_domain	-	no_errors	RUSC2	HGNC	ENSG00000198853				64	0	0	43	9	17.3077
RUSC2	0	genome.wustl.edu	37	9	35547634	35547634	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	35547634	35547634	G	A	SNP	RUSC2	ENST00000361226	human	ensembl	74_37	+1	known	silent	c.1116	p.P372	0.961	NULL	pfam_Run,pfam_SH3_2,superfamily_SH3_domain,smart_Run,smart_SH3_domain,pfscan_Run,pfscan_SH3_domain	-	no_errors	RUSC2	HGNC	ENSG00000198853				100	0	0	80	9	10.1124
RUSC2	0	genome.wustl.edu	37	9	35561189	35561189	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	35561189	35561189	C	T	SNP	RUSC2	ENST00000361226	human	ensembl	74_37	+1	known	missense	c.4361	p.A1454V	1.000	pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_Run,pfam_SH3_2,superfamily_SH3_domain,smart_Run,smart_SH3_domain,pfscan_Run,pfscan_SH3_domain	-	no_errors	RUSC2	HGNC	ENSG00000198853				88	0	0	79	6	7.05882
TESK1	0	genome.wustl.edu	37	9	35609008	35609008	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	35609008	35609008	C	T	SNP	TESK1	ENST00000336395	human	ensembl	74_37	+1	known	missense	c.1150	p.R384W	0.980	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	TESK1	HGNC	ENSG00000107140				94	0	0	100	39	28.0576
SIT1	0	genome.wustl.edu	37	9	35650822	35650822	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	35650822	35650822	G	A	SNP	SIT1	ENST00000259608	human	ensembl	74_37	-1	known	missense	c.29	p.A10V	0.003	NULL	NULL	-	no_errors	SIT1	HGNC	ENSG00000137078				25	0	0	13	3	18.75
TPM2	0	genome.wustl.edu	37	9	35685136	35685136	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	35685136	35685136	G	A	SNP	TPM2	ENST00000378292	human	ensembl	74_37	-1	known	silent	c.564	p.S188	1.000	pfam_Tropomyosin,prints_Tropomyosin	pfam_Tropomyosin,prints_Tropomyosin	-	no_errors	TPM2	HGNC	ENSG00000198467				92	0	0	69	8	10.3896
HINT2	0	genome.wustl.edu	37	9	35813042	35813042	+	RNA	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	35813042	35813042	T	C	SNP	HINT2	ENST00000461169	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.939	-	-	-	no_errors	HINT2	HGNC	ENSG00000137133				133	0	0	139	11	7.33333
ZBTB5	0	genome.wustl.edu	37	9	37440560	37440560	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	37440560	37440560	G	A	SNP	ZBTB5	ENST00000307750	human	ensembl	74_37	-1	known	silent	c.1989	p.T663	1.000	pfscan_Znf_C2H2	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB5	HGNC	ENSG00000168795				76	0	0	49	7	12.5
FBXO10	0	genome.wustl.edu	37	9	37521836	37521836	+	Splice_Site	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	37521836	37521836	C	T	SNP	FBXO10	ENST00000432825	human	ensembl	74_37	-1	known	splice_site	c.1931-1	e7-1	1.000	-	-	-	no_errors	FBXO10	HGNC	ENSG00000147912				34	0	0	23	4	14.8148
FBXO10	0	genome.wustl.edu	37	9	37531990	37531990	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	37531990	37531990	G	A	SNP	FBXO10	ENST00000432825	human	ensembl	74_37	-1	known	silent	c.1485	p.G495	0.127	superfamily_Pectin_lyase_fold/virulence,smart_Carb-bd_sugar_hydrolysis-dom,smart_PbH1	pfam_F-box_dom,superfamily_Pectin_lyase_fold/virulence,superfamily_F-box_dom,smart_F-box_dom,smart_PbH1,smart_Carb-bd_sugar_hydrolysis-dom,pfscan_F-box_dom,tigrfam_Para_beta_helix_rpt-2	-	no_errors	FBXO10	HGNC	ENSG00000147912				62	0	0	40	11	21.5686
SLC25A51	0	genome.wustl.edu	37	9	37888102	37888102	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	37888102	37888102	T	G	SNP	SLC25A51	ENST00000242275	human	ensembl	74_37	-1	known	missense	c.446	p.K149T	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	SLC25A51	HGNC	ENSG00000122696				173	0	0	133	15	10.1351
GLIS3	0	genome.wustl.edu	37	9	3898791	3898791	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	3898791	3898791	G	A	SNP	GLIS3	ENST00000381971	human	ensembl	74_37	-1	known	silent	c.2028	p.C676	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLIS3	HGNC	ENSG00000107249				70	0	0	41	13	24.0741
GLIS3	0	genome.wustl.edu	37	9	4117945	4117945	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	4117945	4117945	G	A	SNP	GLIS3	ENST00000381971	human	ensembl	74_37	-1	known	silent	c.1533	p.Y511	0.997	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLIS3	HGNC	ENSG00000107249				69	0	0	84	10	10.6383
SPATA31A6	0	genome.wustl.edu	37	9	43630570	43630570	+	Silent	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	43630570	43630570	G	T	SNP	SPATA31A6	ENST00000332857	human	ensembl	74_37	-1	known	silent	c.132	p.P44	0.004	NULL	NULL	-	no_errors	SPATA31A6	HGNC	ENSG00000185775				197	1	0.505051	194	11	5.36585
JAK2	0	genome.wustl.edu	37	9	5044429	5044429	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	5044429	5044429	G	A	SNP	JAK2	ENST00000381652	human	ensembl	74_37	+1	known	missense	c.377	p.S126N	0.898	smart_Band_41_domain,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_FERM_domain,prints_Tyr_kinase_non-rcpt_Jak2	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,superfamily_Kinase-like_dom,superfamily_FERM_central,smart_Band_41_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_FERM_domain,pfscan_SH2,pfscan_Prot_kinase_dom,prints_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Tyr_kinase_non-rcpt_Jak2,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	JAK2	HGNC	ENSG00000096968				115	1	0.862069	79	6	7.05882
PDCD1LG2	0	genome.wustl.edu	37	9	5557640	5557640	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	5557640	5557640	T	A	SNP	PDCD1LG2	ENST00000397747	human	ensembl	74_37	+1	known	missense	c.654	p.H218Q	0.000	NULL	pfam_CD80_C2-set,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	PDCD1LG2	HGNC	ENSG00000197646				194	0	0	144	14	8.86076
KDM4C	0	genome.wustl.edu	37	9	7013971	7013971	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	7013971	7013971	T	C	SNP	KDM4C	ENST00000381309	human	ensembl	74_37	+1	known	missense	c.2152	p.C718R	1.000	superfamily_Znf_FYVE_PHD,smart_Znf_PHD	pfam_JmjC_dom,pfam_TF_JmjN,superfamily_Znf_FYVE_PHD,superfamily_Chorismate_mutase_type_II,smart_TF_JmjN,smart_JmjC_dom,smart_Znf_PHD,smart_Tudor,pfscan_TF_JmjN,pfscan_JmjC_dom	-	no_errors	KDM4C	HGNC	ENSG00000107077				113	0	0	96	9	8.57143
FOXD4L3	0	genome.wustl.edu	37	9	70918913	70918913	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	70918913	70918913	G	A	SNP	FOXD4L3	ENST00000342833	human	ensembl	74_37	+1	known	missense	c.1046	p.R349H	0.967	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXD4L3	HGNC	ENSG00000187559				142	0	0	157	18	10.2857
PGM5	0	genome.wustl.edu	37	9	70999325	70999325	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	70999325	70999325	G	A	SNP	PGM5	ENST00000396396	human	ensembl	74_37	+1	known	missense	c.436	p.D146N	1.000	pfam_A-D-PHexomutase_a/b/a-I,superfamily_A-D-PHexomutase_a/b/a-I/II/III	pfam_A-D-PHexomutase_a/b/a-I,pfam_A-D-PHexomutase_a/b/a-III,pfam_A-D-PHexomutase_a/b/a-II,superfamily_A-D-PHexomutase_a/b/a-I/II/III,prints_Alpha-D-phosphohexomutase_SF	-	no_errors	PGM5	HGNC	ENSG00000154330				108	0	0	89	8	8.24742
KANK1	0	genome.wustl.edu	37	9	710960	710960	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	710960	710960	A	C	SNP	KANK1	ENST00000382297	human	ensembl	74_37	+1	known	missense	c.194	p.K65T	1.000	pfam_KN_motif	pfam_Ankyrin_rpt,pfam_KN_motif,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	KANK1	HGNC	ENSG00000107104				88	0	0	75	7	8.53659
TJP2	0	genome.wustl.edu	37	9	71836211	71836211	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	71836211	71836211	C	T	SNP	TJP2	ENST00000539225	human	ensembl	74_37	+1	known	nonsense	c.844	p.R282*	0.806	NULL	pfam_PDZ,pfam_GK/Ca_channel_bsu,pfam_SH3_2,superfamily_PDZ,superfamily_P-loop_NTPase,superfamily_SH3_domain,smart_PDZ,smart_GK/Ca_channel_bsu,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like,prints_ZonOcculS2,prints_ZonOcculdens	-	no_errors	TJP2	HGNC	ENSG00000119139				16	0	0	9	3	25
APBA1	0	genome.wustl.edu	37	9	72046302	72046302	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	72046302	72046302	T	C	SNP	APBA1	ENST00000265381	human	ensembl	74_37	-1	known	missense	c.2455	p.T819A	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PTB/PI_dom,pfam_PDZ,superfamily_PDZ,smart_PTB/PI_dom,smart_PDZ,pfscan_PDZ,pfscan_PTB/PI_dom	-	no_errors	APBA1	HGNC	ENSG00000107282				93	0	0	103	6	5.50459
PTAR1	0	genome.wustl.edu	37	9	72338404	72338404	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	72338404	72338404	G	T	SNP	PTAR1	ENST00000340434	human	ensembl	74_37	-1	known	missense	c.785	p.P262H	0.019	NULL	pfam_Prenyl_trans_a,pfscan_Prenyl_trans_a	-	no_errors	PTAR1	HGNC	ENSG00000188647				108	1	0.917431	91	11	10.7843
C9orf135	0	genome.wustl.edu	37	9	72521056	72521056	+	RNA	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	72521056	72521056	T	A	SNP	C9orf135	ENST00000466872	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.476	-	-	-	no_errors	C9orf135	HGNC	ENSG00000204711				81	0	0	62	7	10.1449
KLF9	0	genome.wustl.edu	37	9	73002756	73002756	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	73002756	73002756	C	T	SNP	KLF9	ENST00000377126	human	ensembl	74_37	-1	known	missense	c.671	p.R224Q	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	KLF9	HGNC	ENSG00000119138				80	0	0	60	15	20
TRPM3	0	genome.wustl.edu	37	9	73240126	73240126	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	73240126	73240126	T	C	SNP	TRPM3	ENST00000423814	human	ensembl	74_37	-1	known	missense	c.1835	p.N612S	1.000	NULL	pfam_Ion_trans_dom	-	no_errors	TRPM3	HGNC	ENSG00000083067				27	0	0	32	3	8.57143
TMEM2	0	genome.wustl.edu	37	9	74315635	74315635	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	74315635	74315635	T	A	SNP	TMEM2	ENST00000377044	human	ensembl	74_37	-1	known	missense	c.3300	p.E1100D	0.032	NULL	pfam_G8_domain,superfamily_Pectin_lyase_fold/virulence	-	no_errors	TMEM2	HGNC	ENSG00000135048				113	0	0	89	8	8.24742
TMEM2	0	genome.wustl.edu	37	9	74360123	74360123	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	74360123	74360123	C	T	SNP	TMEM2	ENST00000377044	human	ensembl	74_37	-1	known	missense	c.845	p.S282N	0.000	NULL	pfam_G8_domain,superfamily_Pectin_lyase_fold/virulence	-	no_errors	TMEM2	HGNC	ENSG00000135048				82	0	0	58	4	6.45161
GDA	0	genome.wustl.edu	37	9	74817550	74817550	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	74817550	74817550	A	G	SNP	GDA	ENST00000238018	human	ensembl	74_37	+1	known	silent	c.276	p.G92	1.000	pfam_Amidohydro_1,tigrfam_Guanine_deaminase	pfam_Amidohydro_1,tigrfam_Guanine_deaminase	-	no_errors	GDA	HGNC	ENSG00000119125				141	0	0	103	9	8.03571
TMC1	0	genome.wustl.edu	37	9	75355124	75355124	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	75355124	75355124	A	C	SNP	TMC1	ENST00000297784	human	ensembl	74_37	+1	known	missense	c.452	p.K151T	1.000	NULL	pfam_TMC	-	no_errors	TMC1	HGNC	ENSG00000165091				81	0	0	49	13	20.9677
TMC1	0	genome.wustl.edu	37	9	75450918	75450918	+	RNA	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	75450918	75450918	C	T	SNP	TMC1	ENST00000486417	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.031	-	-	-	no_errors	TMC1	HGNC	ENSG00000165091				103	0	0	64	18	21.9512
RORB	0	genome.wustl.edu	37	9	77280434	77280434	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	77280434	77280434	G	A	SNP	RORB	ENST00000396204	human	ensembl	74_37	+1	known	missense	c.956	p.C319Y	1.000	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_ROR_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_ThyrH_rcpt,pfscan_Znf_hrmn_rcpt	-	no_errors	RORB	HGNC	ENSG00000198963				137	0	0	87	9	9.375
TRPM6	0	genome.wustl.edu	37	9	77397726	77397726	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	77397726	77397726	A	G	SNP	TRPM6	ENST00000451710	human	ensembl	74_37	-1	known	missense	c.2963	p.L988P	1.000	pfam_Ion_trans_dom	pfam_MHCK_EF2_kinase,pfam_Ion_trans_dom,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	TRPM6	HGNC	ENSG00000119121				96	0	0	89	5	5.31915
NMRK1	0	genome.wustl.edu	37	9	77676361	77676361	+	RNA	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	77676361	77676361	G	A	SNP	NMRK1	ENST00000482537	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.036	-	-	-	no_errors	NMRK1	HGNC	ENSG00000106733				30	0	0	23	3	11.5385
OSTF1	0	genome.wustl.edu	37	9	77755767	77755767	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	77755767	77755767	A	G	SNP	OSTF1	ENST00000346234	human	ensembl	74_37	+1	known	missense	c.505	p.R169G	0.993	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	pfam_Ankyrin_rpt,pfam_SH3_domain,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SH3_domain,smart_SH3_domain,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SH3_domain,prints_SH3_domain,prints_p67phox,prints_Ankyrin_rpt	-	no_errors	OSTF1	HGNC	ENSG00000134996				123	0	0	95	8	7.76699
PCSK5	0	genome.wustl.edu	37	9	78953147	78953147	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	78953147	78953147	T	C	SNP	PCSK5	ENST00000545128	human	ensembl	74_37	+1	known	missense	c.4669	p.Y1557H	0.997	superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat	pfam_Peptidase_S8/S53_dom,pfam_PrprotnconvertsP,superfamily_Peptidase_S8/S53_dom,superfamily_Galactose-bd-like,superfamily_Growth_fac_rcpt_N_dom,superfamily_Prot_inh_propept,smart_Furin_repeat,smart_EG-like_dom,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK5	HGNC	ENSG00000099139				26	0	0	25	4	13.7931
PRUNE2	0	genome.wustl.edu	37	9	79323928	79323928	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	79323928	79323928	A	G	SNP	PRUNE2	ENST00000428286	human	ensembl	74_37	-1	known	missense	c.2185	p.Y729H	0.963	NULL	pfam_Bcl2-/adenovirus-E1B,pfam_CRAL-TRIO_dom,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	-	no_errors	PRUNE2	HGNC	ENSG00000106772				168	1	0.591716	139	9	6.08108
PRUNE2	0	genome.wustl.edu	37	9	79465470	79465470	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	79465470	79465470	A	G	SNP	PRUNE2	ENST00000376718	human	ensembl	74_37	-1	novel	missense	c.253	p.F85L	0.993	NULL	pfam_Bcl2-/adenovirus-E1B,pfam_CRAL-TRIO_dom,pfam_DHHA2,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	-	no_errors	PRUNE2	HGNC	ENSG00000106772				208	0	0	173	11	5.97826
FOXB2	0	genome.wustl.edu	37	9	79634780	79634780	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	79634780	79634780	C	A	SNP	FOXB2	ENST00000376708	human	ensembl	74_37	+1	known	nonsense	c.210	p.C70*	1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head,prints_Antifreeze_1	-	no_errors	FOXB2	HGNC	ENSG00000204612				56	0	0	50	3	5.66038
VPS13A	0	genome.wustl.edu	37	9	79896801	79896801	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	79896801	79896801	G	A	SNP	VPS13A	ENST00000360280	human	ensembl	74_37	+1	known	missense	c.2923	p.D975N	0.003	NULL	pfam_VPSAP_dom,pfam_Autophagy-rel_C	-	no_errors	VPS13A	HGNC	ENSG00000197969				101	0	0	45	4	8.16327
VPS13A	0	genome.wustl.edu	37	9	79946953	79946953	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	79946953	79946953	T	C	SNP	VPS13A	ENST00000360280	human	ensembl	74_37	+1	known	missense	c.6019	p.S2007P	0.000	NULL	pfam_VPSAP_dom,pfam_Autophagy-rel_C	-	no_errors	VPS13A	HGNC	ENSG00000197969				268	1	0.371747	166	22	11.7021
GNA14	0	genome.wustl.edu	37	9	80144131	80144131	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	80144131	80144131	T	C	SNP	GNA14	ENST00000341700	human	ensembl	74_37	-1	known	missense	c.163	p.M55V	1.000	pfam_Gprotein_alpha_su,superfamily_P-loop_NTPase,smart_Gprotein_alpha_su	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su,prints_Gprotein_alpha_Q	-	no_errors	GNA14	HGNC	ENSG00000156049				329	0	0	267	27	9.18367
GNAQ	0	genome.wustl.edu	37	9	80343493	80343493	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	80343493	80343493	T	C	SNP	GNAQ	ENST00000286548	human	ensembl	74_37	-1	known	missense	c.826	p.K276E	1.000	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su,prints_Gprotein_alpha_Q,prints_Fungi_Gprotein_alpha	-	no_errors	GNAQ	HGNC	ENSG00000156052				244	0	0	228	21	8.43373
PSAT1	0	genome.wustl.edu	37	9	80915531	80915531	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	80915531	80915531	T	C	SNP	PSAT1	ENST00000376588	human	ensembl	74_37	+1	known	missense	c.74	p.I25T	0.998	pfam_Aminotrans_V/Cys_dSase,superfamily_PyrdxlP-dep_Trfase,pirsf_Pser_aminoTfrase,tigrfam_Pser_aminoTfrase_subgr	pfam_Aminotrans_V/Cys_dSase,superfamily_PyrdxlP-dep_Trfase,pirsf_Pser_aminoTfrase,tigrfam_Pser_aminoTfrase_subgr	-	no_errors	PSAT1	HGNC	ENSG00000135069				54	0	0	41	3	6.81818
PSAT1	0	genome.wustl.edu	37	9	80943013	80943013	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	80943013	80943013	C	T	SNP	PSAT1	ENST00000376588	human	ensembl	74_37	+1	known	missense	c.916	p.R306C	1.000	pfam_Aminotrans_V/Cys_dSase,superfamily_PyrdxlP-dep_Trfase,pirsf_Pser_aminoTfrase,tigrfam_Pser_aminoTfrase_subgr	pfam_Aminotrans_V/Cys_dSase,superfamily_PyrdxlP-dep_Trfase,pirsf_Pser_aminoTfrase,tigrfam_Pser_aminoTfrase_subgr	-	no_errors	PSAT1	HGNC	ENSG00000135069				68	0	0	56	6	9.67742
TLE4	0	genome.wustl.edu	37	9	82242307	82242307	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	82242307	82242307	C	T	SNP	TLE4	ENST00000376520	human	ensembl	74_37	+1	known	nonsense	c.334	p.Q112*	1.000	pfam_Groucho/TLE_N	pfam_Groucho/TLE_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Groucho_enhance	-	no_errors	TLE4	HGNC	ENSG00000106829				127	0	0	91	11	10.7843
TLE1	0	genome.wustl.edu	37	9	84199195	84199195	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	84199195	84199195	C	T	SNP	TLE1	ENST00000376499	human	ensembl	74_37	-1	known	missense	c.2231	p.S744N	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom,prints_Groucho_enhance	pfam_Groucho/TLE_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Groucho_enhance	-	no_errors	TLE1	HGNC	ENSG00000196781				104	0	0	90	7	7.21649
TLE1	0	genome.wustl.edu	37	9	84248267	84248267	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	84248267	84248267	C	T	SNP	TLE1	ENST00000376499	human	ensembl	74_37	-1	known	missense	c.590	p.G197D	1.000	NULL	pfam_Groucho/TLE_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Groucho_enhance	-	no_errors	TLE1	HGNC	ENSG00000196781				58	0	0	40	10	20
SPATA31D3	0	genome.wustl.edu	37	9	84562814	84562814	+	RNA	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	84562814	84562814	C	T	SNP	SPATA31D3	ENST00000334208	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SPATA31D3	HGNC	ENSG00000186788				43	0	0	31	6	16.2162
SPATA31D1	0	genome.wustl.edu	37	9	84606581	84606581	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	84606581	84606581	T	C	SNP	SPATA31D1	ENST00000344803	human	ensembl	74_37	+1	known	missense	c.1196	p.I399T	0.000	NULL	NULL	-	no_errors	SPATA31D1	HGNC	ENSG00000214929				106	0	0	70	6	7.89474
SPATA31D1	0	genome.wustl.edu	37	9	84607051	84607051	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	84607051	84607051	C	T	SNP	SPATA31D1	ENST00000344803	human	ensembl	74_37	+1	known	missense	c.1666	p.P556S	0.001	NULL	NULL	-	no_errors	SPATA31D1	HGNC	ENSG00000214929				133	0	0	129	15	10.4167
SPATA31D1	0	genome.wustl.edu	37	9	84608052	84608052	+	Silent	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	84608052	84608052	C	A	SNP	SPATA31D1	ENST00000344803	human	ensembl	74_37	+1	known	silent	c.2667	p.S889	0.000	NULL	NULL	-	no_errors	SPATA31D1	HGNC	ENSG00000214929				87	0	0	73	6	7.59494
RASEF	0	genome.wustl.edu	37	9	85612040	85612040	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	85612040	85612040	A	T	SNP	RASEF	ENST00000376447	human	ensembl	74_37	-1	known	missense	c.1807	p.F603I	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,superfamily_Vinculin/catenin,smart_EF_hand_dom,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,pfscan_EF_hand_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	RASEF	HGNC	ENSG00000165105				83	0	0	52	6	10.3448
RASEF	0	genome.wustl.edu	37	9	85615158	85615158	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	85615158	85615158	G	A	SNP	RASEF	ENST00000376447	human	ensembl	74_37	-1	known	missense	c.1649	p.A550V	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,superfamily_Vinculin/catenin,smart_EF_hand_dom,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,pfscan_EF_hand_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	RASEF	HGNC	ENSG00000165105				70	0	0	55	4	6.77966
FRMD3	0	genome.wustl.edu	37	9	85913663	85913663	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	85913663	85913663	C	A	SNP	FRMD3	ENST00000304195	human	ensembl	74_37	-1	known	missense	c.1070	p.R357I	1.000	pfam_FERM-adjacent	pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	FRMD3	HGNC	ENSG00000172159				55	0	0	47	4	7.84314
UBQLN1	0	genome.wustl.edu	37	9	86276735	86276735	+	Silent	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	86276735	86276735	A	C	SNP	UBQLN1	ENST00000376395	human	ensembl	74_37	-1	known	silent	c.1737	p.A579	0.973	pfam_UBA/Ts_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	pfam_Ubiquitin_dom,pfam_Rad60/SUMO_like,pfam_UBA/Ts_N,superfamily_UBA-like,superfamily_ARM-type_fold,superfamily_XPC-bd,smart_Ubiquitin_dom,smart_STI1_HS-bd,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Ubiquitin_supergroup	-	no_errors	UBQLN1	HGNC	ENSG00000135018				141	0	0	115	7	5.7377
UBQLN1	0	genome.wustl.edu	37	9	86294735	86294735	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	86294735	86294735	A	T	SNP	UBQLN1	ENST00000376395	human	ensembl	74_37	-1	known	missense	c.666	p.N222K	1.000	superfamily_ARM-type_fold,smart_STI1_HS-bd	pfam_Ubiquitin_dom,pfam_Rad60/SUMO_like,pfam_UBA/Ts_N,superfamily_UBA-like,superfamily_ARM-type_fold,superfamily_XPC-bd,smart_Ubiquitin_dom,smart_STI1_HS-bd,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Ubiquitin_supergroup	-	no_errors	UBQLN1	HGNC	ENSG00000135018				142	0	0	96	13	11.9266
C9orf64	0	genome.wustl.edu	37	9	86570365	86570365	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	86570365	86570365	A	G	SNP	C9orf64	ENST00000376344	human	ensembl	74_37	-1	known	silent	c.528	p.N176	0.603	pfam_DUF2419	pfam_DUF2419	-	no_errors	C9orf64	HGNC	ENSG00000165118				75	0	0	84	5	5.61798
NTRK2	0	genome.wustl.edu	37	9	87285819	87285819	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	87285819	87285819	C	T	SNP	NTRK2	ENST00000277120	human	ensembl	74_37	+1	known	silent	c.156	p.I52	0.998	pfam_LRR-contain_N,smart_LRR-contain_N,prints_Tyr_kin_neurotrophic_rcpt_2	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,pfam_LRR-contain_N,superfamily_Kinase-like_dom,smart_LRR-contain_N,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_Tyr_kinase_NGF_rcpt,prints_Tyr_kin_neurotrophic_rcpt_2	-	no_errors	NTRK2	HGNC	ENSG00000148053				91	0	0	60	19	24.0506
NTRK2	0	genome.wustl.edu	37	9	87635214	87635214	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	87635214	87635214	G	A	SNP	NTRK2	ENST00000277120	human	ensembl	74_37	+1	known	missense	c.2266	p.G756R	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,pfam_LRR-contain_N,superfamily_Kinase-like_dom,smart_LRR-contain_N,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_Tyr_kinase_NGF_rcpt,prints_Tyr_kin_neurotrophic_rcpt_2	-	no_errors	NTRK2	HGNC	ENSG00000148053				167	0	0	140	16	10.2564
AGTPBP1	0	genome.wustl.edu	37	9	88234216	88234216	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	88234216	88234216	A	C	SNP	AGTPBP1	ENST00000376109	human	ensembl	74_37	-1	known	missense	c.2136	p.N712K	0.998	NULL	pfam_Peptidase_M14,superfamily_ARM-type_fold	-	no_errors	AGTPBP1	HGNC	ENSG00000135049				41	0	0	26	3	10.3448
ZCCHC6	0	genome.wustl.edu	37	9	88943388	88943388	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	88943388	88943388	C	T	SNP	ZCCHC6	ENST00000375963	human	ensembl	74_37	-1	known	missense	c.1475	p.S492N	0.997	NULL	pfam_PAP_assoc,pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_U1,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC6	HGNC	ENSG00000083223				146	0	0	108	12	10
SPATA31E1	0	genome.wustl.edu	37	9	90503684	90503684	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	90503684	90503684	G	A	SNP	SPATA31E1	ENST00000325643	human	ensembl	74_37	+1	known	missense	c.4282	p.G1428S	0.000	NULL	NULL	-	no_errors	SPATA31E1	HGNC	ENSG00000177992				35	0	0	32	7	17.9487
SPATA31C1	0	genome.wustl.edu	37	9	90535543	90535543	+	RNA	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	90535543	90535543	C	A	SNP	SPATA31C1	ENST00000602681	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	SPATA31C1	HGNC	ENSG00000230246				204	0	0	168	12	6.66667
S1PR3	0	genome.wustl.edu	37	9	91617218	91617218	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	91617218	91617218	A	G	SNP	S1PR3	ENST00000358157	human	ensembl	74_37	+1	known	missense	c.1103	p.N368S	0.000	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_EDG3_rcpt,prints_S1P_rcpt,prints_GPCR_Rhodpsn,prints_EDG1_rcpt,prints_Cnbnoid_rcpt	-	no_errors	S1PR3	HGNC	ENSG00000213694				41	0	0	37	4	9.7561
SEMA4D	0	genome.wustl.edu	37	9	92003858	92003858	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	92003858	92003858	C	T	SNP	SEMA4D	ENST00000356444	human	ensembl	74_37	-1	known	silent	c.879	p.L293	0.806	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Semap_dom,pfam_Plexin_repeat,pfam_Immunoglobulin,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_Ig_sub,smart_Ig_sub2,pfscan_Semap_dom,pfscan_Ig-like_dom	-	no_errors	SEMA4D	HGNC	ENSG00000187764				149	0	0	143	13	8.33333
SEMA4D	0	genome.wustl.edu	37	9	92008521	92008521	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	92008521	92008521	C	T	SNP	SEMA4D	ENST00000356444	human	ensembl	74_37	-1	known	missense	c.464	p.R155K	1.000	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Semap_dom,pfam_Plexin_repeat,pfam_Immunoglobulin,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_Ig_sub,smart_Ig_sub2,pfscan_Semap_dom,pfscan_Ig-like_dom	-	no_errors	SEMA4D	HGNC	ENSG00000187764				125	0	0	97	8	7.61905
SYK	0	genome.wustl.edu	37	9	93606454	93606454	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	93606454	93606454	C	T	SNP	SYK	ENST00000375746	human	ensembl	74_37	+1	known	missense	c.274	p.H92Y	1.000	pfam_SH2,smart_SH2,pirsf_Tyr_kinase_non-rcpt_SYK/ZAP70,pfscan_SH2	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,superfamily_Kinase-like_dom,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_SYK/ZAP70,pfscan_SH2,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	SYK	HGNC	ENSG00000165025				24	0	0	57	4	6.55738
SYK	0	genome.wustl.edu	37	9	93636501	93636501	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	93636501	93636501	G	A	SNP	SYK	ENST00000375746	human	ensembl	74_37	+1	known	missense	c.931	p.G311R	0.001	pirsf_Tyr_kinase_non-rcpt_SYK/ZAP70	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,superfamily_Kinase-like_dom,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_SYK/ZAP70,pfscan_SH2,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	SYK	HGNC	ENSG00000165025				72	0	0	62	6	8.82353
AUH	0	genome.wustl.edu	37	9	93979588	93979588	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	93979588	93979588	C	T	SNP	AUH	ENST00000375731	human	ensembl	74_37	-1	known	missense	c.865	p.A289T	1.000	NULL	pfam_Crotonase_core_superfam	-	no_errors	AUH	HGNC	ENSG00000148090				88	0	0	52	6	10.3448
NFIL3	0	genome.wustl.edu	37	9	94172249	94172249	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	94172249	94172249	T	C	SNP	NFIL3	ENST00000297689	human	ensembl	74_37	-1	known	silent	c.768	p.S256	0.323	pfam_Vert_IL3-reg_TF,pirsf_TF_bZIP_E4BP4	pfam_Vert_IL3-reg_TF,pfam_bZIP,smart_bZIP,pirsf_TF_bZIP_E4BP4,pfscan_bZIP	-	no_errors	NFIL3	HGNC	ENSG00000165030				181	0	0	148	13	8.07453
ROR2	0	genome.wustl.edu	37	9	94487031	94487031	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	94487031	94487031	G	A	SNP	ROR2	ENST00000375708	human	ensembl	74_37	-1	known	missense	c.1745	p.T582M	0.999	pirsf_Tyr_kinase_rcpt_ROR,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Tyr_kinase_rcpt_ROR,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Kringle,pfam_Frizzled_dom,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Kinase-like_dom,superfamily_Kringle-like,superfamily_Frizzled_dom,smart_Ig_sub,smart_Ig_sub2,smart_Kringle,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Frizzled_dom,pfscan_Kringle,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	ROR2	HGNC	ENSG00000169071				54	0	0	40	14	25.9259
IARS	0	genome.wustl.edu	37	9	95040154	95040154	+	Nonsense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	95040154	95040154	A	T	SNP	IARS	ENST00000375643	human	ensembl	74_37	-1	known	nonsense	c.885	p.Y295*	0.990	pfam_aa-tRNA-synth_Ia,superfamily_Val/Leu/Ile-tRNA-synth_edit,tigrfam_Ile-tRNA-ligase	pfam_aa-tRNA-synth_Ia,pfam_V/L/I-tRNA-synth_anticodon-bd,pfam_Methionyl/Leucyl_tRNA_Synth,superfamily_Val/Leu/Ile-tRNA-synth_edit,superfamily_tRNAsynth_1a_anticodon-bd,prints_Ile-tRNA-ligase,tigrfam_Ile-tRNA-ligase	-	no_errors	IARS	HGNC	ENSG00000196305				45	0	0	31	4	11.4286
NOL8	0	genome.wustl.edu	37	9	95064009	95064009	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	95064009	95064009	A	T	SNP	NOL8	ENST00000442668	human	ensembl	74_37	-1	known	missense	c.2999	p.I1000K	0.910	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	NOL8	HGNC	ENSG00000198000				48	0	0	28	3	9.67742
NOL8	0	genome.wustl.edu	37	9	95077604	95077604	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	95077604	95077604	C	T	SNP	NOL8	ENST00000442668	human	ensembl	74_37	-1	known	missense	c.1303	p.E435K	0.002	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	NOL8	HGNC	ENSG00000198000				60	0	0	39	6	13.3333
ECM2	0	genome.wustl.edu	37	9	95258669	95258669	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	95258669	95258669	T	A	SNP	ECM2	ENST00000344604	human	ensembl	74_37	-1	known	missense	c.2028	p.E676D	0.977	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_VWF_C,smart_VWF_C,smart_Leu-rich_rpt_typical-subtyp,pfscan_VWF_C	-	no_errors	ECM2	HGNC	ENSG00000106823				106	0	0	71	5	6.57895
IPPK	0	genome.wustl.edu	37	9	95418797	95418797	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	95418797	95418797	C	T	SNP	IPPK	ENST00000287996	human	ensembl	74_37	-1	known	missense	c.166	p.V56M	1.000	pfam_Ins_P5_2-kin	pfam_Ins_P5_2-kin	-	no_errors	IPPK	HGNC	ENSG00000127080				82	0	0	62	25	28.7356
BICD2	0	genome.wustl.edu	37	9	95482980	95482980	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	95482980	95482980	G	A	SNP	BICD2	ENST00000356884	human	ensembl	74_37	-1	known	missense	c.664	p.L222F	1.000	pfam_Bicaudal-D_microtubule-assoc	pfam_Bicaudal-D_microtubule-assoc	-	no_errors	BICD2	HGNC	ENSG00000185963				69	0	0	63	8	11.2676
BICD2	0	genome.wustl.edu	37	9	95485026	95485026	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	95485026	95485026	C	T	SNP	BICD2	ENST00000356884	human	ensembl	74_37	-1	known	missense	c.518	p.R173Q	1.000	pfam_Bicaudal-D_microtubule-assoc	pfam_Bicaudal-D_microtubule-assoc	-	no_errors	BICD2	HGNC	ENSG00000185963				54	0	0	50	8	13.7931
BICD2	0	genome.wustl.edu	37	9	95491462	95491462	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	95491462	95491462	C	T	SNP	BICD2	ENST00000356884	human	ensembl	74_37	-1	known	silent	c.297	p.R99	0.905	pfam_Bicaudal-D_microtubule-assoc	pfam_Bicaudal-D_microtubule-assoc	-	no_errors	BICD2	HGNC	ENSG00000185963				65	0	0	58	6	9.375
FGD3	0	genome.wustl.edu	37	9	95780478	95780478	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	95780478	95780478	T	A	SNP	FGD3	ENST00000337352	human	ensembl	74_37	+1	known	missense	c.1336	p.S446T	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Znf_FYVE,superfamily_DH-domain,superfamily_Znf_FYVE_PHD,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD3	HGNC	ENSG00000127084				117	0	0	82	10	10.8696
FGD3	0	genome.wustl.edu	37	9	95795136	95795136	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	95795136	95795136	T	C	SNP	FGD3	ENST00000337352	human	ensembl	74_37	+1	known	missense	c.1766	p.V589A	0.000	superfamily_Znf_FYVE_PHD,smart_Znf_FYVE	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Znf_FYVE,superfamily_DH-domain,superfamily_Znf_FYVE_PHD,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD3	HGNC	ENSG00000127084				83	0	0	96	10	9.43396
FAM120A	0	genome.wustl.edu	37	9	96294524	96294524	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	96294524	96294524	T	C	SNP	FAM120A	ENST00000333936	human	ensembl	74_37	+1	known	missense	c.1906	p.Y636H	1.000	NULL	NULL	-	no_errors	FAM120A	HGNC	ENSG00000048828				202	0	0	175	19	9.79381
FAM120A	0	genome.wustl.edu	37	9	96312895	96312895	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	96312895	96312895	G	A	SNP	FAM120A	ENST00000333936	human	ensembl	74_37	+1	known	silent	c.2280	p.R760	0.980	NULL	NULL	-	no_errors	FAM120A	HGNC	ENSG00000048828				77	0	0	77	5	6.09756
DMRT3	0	genome.wustl.edu	37	9	977247	977247	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	977247	977247	C	T	SNP	DMRT3	ENST00000190165	human	ensembl	74_37	+1	known	silent	c.246	p.S82	1.000	NULL	pfam_DM_DNA-bd,pfam_DMA,superfamily_DM_DNA-bd,superfamily_UBA-like,smart_DM_DNA-bd,pfscan_DM_DNA-bd	-	no_errors	DMRT3	HGNC	ENSG00000064218				30	0	0	31	3	8.82353
PTCH1	0	genome.wustl.edu	37	9	98209422	98209422	+	Silent	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	98209422	98209422	C	A	SNP	PTCH1	ENST00000331920	human	ensembl	74_37	-1	known	silent	c.4116	p.T1372	0.064	NULL	pfam_Patched,pfscan_SSD,tigrfam_TM_rcpt_patched	-	no_errors	PTCH1	HGNC	ENSG00000185920				51	0	0	56	10	15.1515
PTCH1	0	genome.wustl.edu	37	9	98222017	98222017	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	98222017	98222017	C	T	SNP	PTCH1	ENST00000331920	human	ensembl	74_37	-1	known	missense	c.2752	p.A918T	1.000	pfam_Patched,tigrfam_TM_rcpt_patched	pfam_Patched,pfscan_SSD,tigrfam_TM_rcpt_patched	-	no_errors	PTCH1	HGNC	ENSG00000185920				66	0	0	47	17	26.5625
PTCH1	0	genome.wustl.edu	37	9	98231206	98231206	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	98231206	98231206	T	C	SNP	PTCH1	ENST00000331920	human	ensembl	74_37	-1	known	missense	c.2077	p.T693A	0.612	pfam_Patched,tigrfam_TM_rcpt_patched	pfam_Patched,pfscan_SSD,tigrfam_TM_rcpt_patched	-	no_errors	PTCH1	HGNC	ENSG00000185920				65	0	0	84	7	7.69231
PTCH1	0	genome.wustl.edu	37	9	98232174	98232174	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	98232174	98232174	G	A	SNP	PTCH1	ENST00000331920	human	ensembl	74_37	-1	known	missense	c.1768	p.L590F	1.000	pfam_Patched,pfscan_SSD,tigrfam_TM_rcpt_patched	pfam_Patched,pfscan_SSD,tigrfam_TM_rcpt_patched	-	no_errors	PTCH1	HGNC	ENSG00000185920				107	0	0	101	13	11.4035
PTCH1	0	genome.wustl.edu	37	9	98242681	98242681	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	98242681	98242681	A	T	SNP	PTCH1	ENST00000331920	human	ensembl	74_37	-1	known	missense	c.936	p.N312K	0.871	tigrfam_TM_rcpt_patched	pfam_Patched,pfscan_SSD,tigrfam_TM_rcpt_patched	-	no_errors	PTCH1	HGNC	ENSG00000185920				195	0	0	152	18	10.5882
ERCC6L2	0	genome.wustl.edu	37	9	98678046	98678046	+	Silent	SNP	C	C	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	98678046	98678046	C	G	SNP	ERCC6L2	ENST00000437817	human	ensembl	74_37	+1	known	silent	c.351	p.V117	0.947	pfam_SNF2_N,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_SNF2_N,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ERCC6L2	HGNC	ENSG00000182150				107	0	0	86	12	12.2449
ERCC6L2	0	genome.wustl.edu	37	9	98683463	98683463	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	98683463	98683463	T	C	SNP	ERCC6L2	ENST00000437817	human	ensembl	74_37	+1	known	missense	c.631	p.Y211H	0.998	pfam_SNF2_N,superfamily_P-loop_NTPase	pfam_SNF2_N,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ERCC6L2	HGNC	ENSG00000182150				57	0	0	41	3	6.81818
DMRT3	0	genome.wustl.edu	37	9	990339	990339	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	990339	990339	G	A	SNP	DMRT3	ENST00000190165	human	ensembl	74_37	+1	known	silent	c.753	p.P251	0.077	pfam_DMA,superfamily_UBA-like	pfam_DM_DNA-bd,pfam_DMA,superfamily_DM_DNA-bd,superfamily_UBA-like,smart_DM_DNA-bd,pfscan_DM_DNA-bd	-	no_errors	DMRT3	HGNC	ENSG00000064218				92	0	0	93	7	7
ENSG00000233820	0	genome.wustl.edu	37	9	99489207	99489207	+	RNA	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	99489207	99489207	C	T	SNP	ENSG00000233820	ENST00000602289	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.996	-	-	-	no_errors	RP11-535M15.2	Clone_based_vega_gene	ENSG00000233820				77	0	0	76	6	7.31707
ZNF510	0	genome.wustl.edu	37	9	99522242	99522242	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	99522242	99522242	A	T	SNP	ZNF510	ENST00000223428	human	ensembl	74_37	-1	known	missense	c.870	p.N290K	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF510	HGNC	ENSG00000081386				89	0	0	56	5	8.19672
NOX1	0	genome.wustl.edu	37	X	100104913	100104913	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	100104913	100104913	C	T	SNP	NOX1	ENST00000372966	human	ensembl	74_37	-1	known	missense	c.1144	p.D382N	1.000	pfam_FAD-bd_8,pfam_OxRdtase_FAD-bd_dom,superfamily_Riboflavin_synthase-like_b-brl,prints_Cyt_b245_heavy_chain	pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_OxRdtase_FAD-bd_dom,superfamily_Riboflavin_synthase-like_b-brl,prints_Cyt_b245_heavy_chain	-	no_errors	NOX1	HGNC	ENSG00000007952				32	0	0	30	4	11.7647
XKRX	0	genome.wustl.edu	37	X	100169342	100169342	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	100169342	100169342	C	T	SNP	XKRX	ENST00000328526	human	ensembl	74_37	-1	known	silent	c.1374	p.R458	0.991	NULL	pfam_Transport_prot_XK	-	no_errors	XKRX	HGNC	ENSG00000182489				320	0	0	251	21	7.72059
XKRX	0	genome.wustl.edu	37	X	100177865	100177865	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	100177865	100177865	A	T	SNP	XKRX	ENST00000328526	human	ensembl	74_37	-1	known	missense	c.560	p.I187N	1.000	pfam_Transport_prot_XK	pfam_Transport_prot_XK	-	no_errors	XKRX	HGNC	ENSG00000182489				103	0	0	100	10	9.09091
TRMT2B	0	genome.wustl.edu	37	X	100292924	100292924	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	100292924	100292924	G	A	SNP	TRMT2B	ENST00000372935	human	ensembl	74_37	-1	known	silent	c.420	p.L140	1.000	NULL	pfam_U5_MeTrfase,pfam_Small_mtfrase_dom	-	no_errors	TRMT2B	HGNC	ENSG00000188917				458	0	0	320	25	7.24638
TMEM35	0	genome.wustl.edu	37	X	100334082	100334082	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	100334082	100334082	A	G	SNP	TMEM35	ENST00000372930	human	ensembl	74_37	+1	known	missense	c.91	p.R31G	1.000	NULL	NULL	-	no_errors	TMEM35	HGNC	ENSG00000126950				37	0	0	18	8	30.7692
TMEM35	0	genome.wustl.edu	37	X	100349662	100349662	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	100349662	100349662	C	T	SNP	TMEM35	ENST00000372930	human	ensembl	74_37	+1	known	missense	c.221	p.A74V	1.000	NULL	NULL	-	no_errors	TMEM35	HGNC	ENSG00000126950				168	0	0	160	32	16.6667
TMEM35	0	genome.wustl.edu	37	X	100349842	100349842	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	100349842	100349842	A	G	SNP	TMEM35	ENST00000372930	human	ensembl	74_37	+1	known	missense	c.401	p.K134R	1.000	NULL	NULL	-	no_errors	TMEM35	HGNC	ENSG00000126950				112	0	0	117	17	12.6866
DRP2	0	genome.wustl.edu	37	X	100515554	100515554	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	100515554	100515554	G	A	SNP	DRP2	ENST00000395209	human	ensembl	74_37	+1	known	missense	c.2818	p.A940T	1.000	pirsf_Dystrophin-related_2	pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_Znf_ZZ,pfam_Spectrin_repeat,pfam_WW_dom,superfamily_WW_dom,smart_Spectrin/alpha-actinin,smart_WW_dom,smart_Znf_ZZ,pirsf_Dystrophin-related_2,pfscan_WW_dom,pfscan_Znf_ZZ	-	no_errors	DRP2	HGNC	ENSG00000102385				223	0	0	213	14	6.1674
WWC3	0	genome.wustl.edu	37	X	10058909	10058909	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	10058909	10058909	C	T	SNP	WWC3	ENST00000380861	human	ensembl	74_37	+1	known	missense	c.476	p.T159I	0.997	NULL	superfamily_C2_dom	-	no_errors	WWC3	HGNC	ENSG00000047644				94	0	0	62	15	19.4805
BTK	0	genome.wustl.edu	37	X	100608210	100608210	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	100608210	100608210	T	C	SNP	BTK	ENST00000308731	human	ensembl	74_37	-1	known	missense	c.1880	p.Y627C	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_SH3_domain,pfam_Znf_Btk_motif,pfam_Pleckstrin_homology,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_Znf_Btk_motif,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_Znf_Btk_motif,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH3_domain,prints_SH2,prints_Znf_Btk_motif	-	no_errors	BTK	HGNC	ENSG00000010671				269	0	0	193	19	8.96226
WWC3	0	genome.wustl.edu	37	X	10077876	10077876	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	10077876	10077876	G	A	SNP	WWC3	ENST00000380861	human	ensembl	74_37	+1	known	missense	c.790	p.A264T	1.000	NULL	superfamily_C2_dom	-	no_errors	WWC3	HGNC	ENSG00000047644				133	1	0.746269	99	21	17.5
ARMCX1	0	genome.wustl.edu	37	X	100808785	100808785	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	100808785	100808785	T	C	SNP	ARMCX1	ENST00000372829	human	ensembl	74_37	+1	known	missense	c.872	p.V291A	1.000	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	pfam_ARM-rpt_dom,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	ARMCX1	HGNC	ENSG00000126947				85	0	0	52	6	10.3448
WWC3	0	genome.wustl.edu	37	X	10096688	10096688	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	10096688	10096688	C	T	SNP	WWC3	ENST00000380861	human	ensembl	74_37	+1	known	missense	c.2372	p.T791M	0.852	NULL	superfamily_C2_dom	-	no_errors	WWC3	HGNC	ENSG00000047644				49	0	0	64	4	5.88235
NXF5	0	genome.wustl.edu	37	X	101087249	101087249	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	101087249	101087249	T	C	SNP	NXF5	ENST00000473265	human	ensembl	74_37	-1	known	silent	c.1089	p.R363	0.000	NULL	pfam_Tap_RNA-bd	-	no_errors	NXF5	HGNC	ENSG00000126952				8	0	0	12	3	20
NXF5	0	genome.wustl.edu	37	X	101095513	101095513	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	101095513	101095513	T	C	SNP	NXF5	ENST00000263032	human	ensembl	74_37	-1	known	missense	c.656	p.N219S	1.000	NULL	pfam_Tap_RNA-bd	-	no_errors	NXF5	HGNC	ENSG00000126952				90	0	0	72	8	10
ZMAT1	0	genome.wustl.edu	37	X	101152909	101152909	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	101152909	101152909	G	A	SNP	ZMAT1	ENST00000372782	human	ensembl	74_37	-1	known	missense	c.437	p.A146V	0.995	smart_Znf_U1	superfamily_Asn/Gln_tRNA_amidoTrfrase-rel,smart_Znf_U1,smart_Znf_C2H2-like	-	no_errors	ZMAT1	HGNC	ENSG00000166432				117	0	0	97	8	7.61905
TCEAL2	0	genome.wustl.edu	37	X	101382346	101382346	+	Nonsense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	101382346	101382346	A	T	SNP	TCEAL2	ENST00000329035	human	ensembl	74_37	+1	known	nonsense	c.544	p.R182*	0.036	pfam_TF_A-like/BEX-like	pfam_TF_A-like/BEX-like	-	no_errors	TCEAL2	HGNC	ENSG00000184905				210	0	0	192	12	5.88235
NXF4	0	genome.wustl.edu	37	X	101818154	101818154	+	RNA	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	101818154	101818154	A	G	SNP	NXF4	ENST00000360035	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.991	-	-	-	no_errors	NXF4	HGNC	ENSG00000196970				240	0	0	219	22	9.12863
BEX1	0	genome.wustl.edu	37	X	102318123	102318123	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	102318123	102318123	A	T	SNP	BEX1	ENST00000372728	human	ensembl	74_37	-1	known	missense	c.80	p.V27D	0.001	pfam_TF_A-like/BEX-like,pirsf_BEX	pfam_TF_A-like/BEX-like,pirsf_BEX	-	no_errors	BEX1	HGNC	ENSG00000133169				339	0	0	310	34	9.88372
TCEAL4	0	genome.wustl.edu	37	X	102842091	102842091	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	102842091	102842091	C	T	SNP	TCEAL4	ENST00000372629	human	ensembl	74_37	+1	known	missense	c.917	p.A306V	0.325	pfam_TF_A-like/BEX-like	pfam_TF_A-like/BEX-like	-	no_errors	TCEAL4	HGNC	ENSG00000133142				196	0	0	182	22	10.7843
RAB9B	0	genome.wustl.edu	37	X	103080451	103080451	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	103080451	103080451	G	A	SNP	RAB9B	ENST00000243298	human	ensembl	74_37	-1	known	silent	c.264	p.S88	0.738	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB9B	HGNC	ENSG00000123570				129	0	0	120	7	5.51181
ESX1	0	genome.wustl.edu	37	X	103499107	103499107	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	103499107	103499107	G	A	SNP	ESX1	ENST00000372588	human	ensembl	74_37	-1	known	silent	c.234	p.G78	0.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_POU	-	no_errors	ESX1	HGNC	ENSG00000123576				157	0	0	137	44	24.3094
MID1	0	genome.wustl.edu	37	X	10437780	10437780	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	10437780	10437780	G	A	SNP	MID1	ENST00000317552	human	ensembl	74_37	-1	known	silent	c.1242	p.Y414	0.568	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Fibronectin_type3,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	MID1	HGNC	ENSG00000101871				160	0	0	105	19	15.3226
SERPINA7	0	genome.wustl.edu	37	X	105279292	105279292	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	105279292	105279292	G	A	SNP	SERPINA7	ENST00000327674	human	ensembl	74_37	-1	known	missense	c.707	p.P236L	1.000	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINA7	HGNC	ENSG00000123561				192	0	0	171	11	6.04396
CXorf57	0	genome.wustl.edu	37	X	105875884	105875884	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	105875884	105875884	A	G	SNP	CXorf57	ENST00000372548	human	ensembl	74_37	+1	known	missense	c.1009	p.T337A	1.000	superfamily_NA-bd_OB-fold	superfamily_NA-bd_OB-fold	-	no_errors	CXorf57	HGNC	ENSG00000147231				70	0	0	49	5	9.25926
RNF128	0	genome.wustl.edu	37	X	106028294	106028294	+	Splice_Site	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	106028294	106028294	G	A	SNP	RNF128	ENST00000255499	human	ensembl	74_37	+1	known	splice_site	c.733-1	e3-1	1.000	-	-	-	no_errors	RNF128	HGNC	ENSG00000133135				162	1	0.613497	87	8	8.42105
MORC4	0	genome.wustl.edu	37	X	106185904	106185904	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	106185904	106185904	T	C	SNP	MORC4	ENST00000355610	human	ensembl	74_37	-1	known	silent	c.2217	p.A739	0.000	NULL	pfam_Znf_CW,pfam_HATPase_ATP-bd,superfamily_HATPase_ATP-bd,superfamily_Prefoldin,pfscan_Znf_CW	-	no_errors	MORC4	HGNC	ENSG00000133131				199	0	0	172	16	8.51064
RBM41	0	genome.wustl.edu	37	X	106331799	106331799	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	106331799	106331799	C	T	SNP	RBM41	ENST00000372479	human	ensembl	74_37	-1	known	nonsense	c.794	p.W265*	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM41	HGNC	ENSG00000089682				101	0	0	85	5	5.55556
FRMPD3	0	genome.wustl.edu	37	X	106803566	106803566	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	106803566	106803566	T	A	SNP	FRMPD3	ENST00000276185	human	ensembl	74_37	+1	known	missense	c.941	p.I314N	1.000	pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	pfam_FERM_central,pfam_PDZ,superfamily_FERM_central,superfamily_PDZ,smart_PDZ,smart_Band_41_domain,pfscan_FERM_domain,pfscan_PDZ	-	no_errors	FRMPD3	HGNC	ENSG00000147234				88	0	0	88	9	9.27835
VSIG1	0	genome.wustl.edu	37	X	107288361	107288361	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	107288361	107288361	A	T	SNP	VSIG1	ENST00000415430	human	ensembl	74_37	+1	known	missense	c.1	p.M1L	0.055	NULL	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	VSIG1	HGNC	ENSG00000101842				47	0	0	37	6	13.9535
ATG4A	0	genome.wustl.edu	37	X	107395055	107395055	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	107395055	107395055	A	C	SNP	ATG4A	ENST00000372232	human	ensembl	74_37	+1	known	missense	c.984	p.K328N	0.998	pfam_Peptidase_C54	pfam_Peptidase_C54	-	no_errors	ATG4A	HGNC	ENSG00000101844				396	0	0	266	20	6.99301
COL4A6	0	genome.wustl.edu	37	X	107457431	107457431	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	107457431	107457431	C	A	SNP	COL4A6	ENST00000372216	human	ensembl	74_37	-1	known	missense	c.355	p.G119C	1.000	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A6	HGNC	ENSG00000197565				111	0	0	112	9	7.43802
COL4A5	0	genome.wustl.edu	37	X	107935981	107935981	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	107935981	107935981	C	T	SNP	COL4A5	ENST00000328300	human	ensembl	74_37	+1	known	missense	c.4532	p.T1511M	0.997	pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A5	HGNC	ENSG00000188153				122	1	0.813008	85	9	9.57447
IRS4	0	genome.wustl.edu	37	X	107979097	107979097	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	107979097	107979097	C	T	SNP	IRS4	ENST00000372129	human	ensembl	74_37	-1	known	missense	c.478	p.A160T	1.000	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Insln_rcpt_S1,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,pfscan_Pleckstrin_homology,pfscan_Insln_rcpt_S1,prints_Insln_rcpt_S1	-	no_errors	IRS4	HGNC	ENSG00000133124				82	0	0	71	7	8.97436
ACSL4	0	genome.wustl.edu	37	X	108924228	108924228	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	108924228	108924228	G	A	SNP	ACSL4	ENST00000340800	human	ensembl	74_37	-1	known	silent	c.777	p.N259	0.911	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSL4	HGNC	ENSG00000068366				177	0	0	138	9	6.12245
RGAG1	0	genome.wustl.edu	37	X	109696605	109696605	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	109696605	109696605	T	C	SNP	RGAG1	ENST00000465301	human	ensembl	74_37	+1	known	silent	c.2760	p.C920	0.004	NULL	NULL	-	no_errors	RGAG1	HGNC	ENSG00000243978				193	0	0	184	18	8.91089
TDGF1P3	0	genome.wustl.edu	37	X	109764545	109764545	+	RNA	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	109764545	109764545	C	T	SNP	TDGF1P3	ENST00000602699	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TDGF1P3	HGNC	ENSG00000225366				60	0	0	60	9	13.0435
CHRDL1	0	genome.wustl.edu	37	X	109937471	109937471	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	109937471	109937471	C	T	SNP	CHRDL1	ENST00000372042	human	ensembl	74_37	-1	known	missense	c.698	p.R233Q	0.998	NULL	pfam_VWF_C,smart_VWF_C,pfscan_VWF_C	-	no_errors	CHRDL1	HGNC	ENSG00000101938				152	0	0	112	33	22.7586
ALG13	0	genome.wustl.edu	37	X	110925502	110925502	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	110925502	110925502	A	T	SNP	ALG13	ENST00000371979	human	ensembl	74_37	+1	known	missense	c.224	p.D75V	1.000	pfam_Glyco_trans_28_C	pfam_Glyco_trans_28_C	-	no_errors	ALG13	HGNC	ENSG00000101901				130	0	0	105	6	5.40541
TRPC5	0	genome.wustl.edu	37	X	111019870	111019870	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	111019870	111019870	A	G	SNP	TRPC5	ENST00000262839	human	ensembl	74_37	-1	known	missense	c.2593	p.Y865H	1.000	NULL	pfam_Ion_trans_dom,pfam_TRP_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_TRPC5_channel,prints_TRPC_channel,tigrfam_TRP_channel	-	no_errors	TRPC5	HGNC	ENSG00000072315				181	0	0	147	11	6.96203
TRPC5	0	genome.wustl.edu	37	X	111195483	111195483	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	111195483	111195483	C	T	SNP	TRPC5	ENST00000262839	human	ensembl	74_37	-1	known	missense	c.166	p.E56K	0.998	superfamily_Ankyrin_rpt-contain_dom,tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_TRPC5_channel,prints_TRPC_channel,tigrfam_TRP_channel	-	no_errors	TRPC5	HGNC	ENSG00000072315				115	0	0	99	7	6.60377
ARHGAP6	0	genome.wustl.edu	37	X	11157336	11157336	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	11157336	11157336	C	T	SNP	ARHGAP6	ENST00000337414	human	ensembl	74_37	-1	known	missense	c.2572	p.G858R	0.127	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP6	HGNC	ENSG00000047648				9	0	0	14	5	26.3158
LHFPL1	0	genome.wustl.edu	37	X	111914414	111914414	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	111914414	111914414	G	A	SNP	LHFPL1	ENST00000371968	human	ensembl	74_37	-1	known	missense	c.205	p.R69C	1.000	pfam_Lipome_HGMIC_fus_partner-like	pfam_Lipome_HGMIC_fus_partner-like	-	no_errors	LHFPL1	HGNC	ENSG00000182508				100	0	0	107	12	10.084
AMOT	0	genome.wustl.edu	37	X	112035138	112035138	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	112035138	112035138	T	C	SNP	AMOT	ENST00000371959	human	ensembl	74_37	-1	known	silent	c.1848	p.A616	0.179	pfam_Angiomotin_C,prints_Angiomotin	pfam_Angiomotin_C,superfamily_Prefoldin,prints_Angiomotin	-	no_errors	AMOT	HGNC	ENSG00000126016				164	0	0	111	36	24.4898
CXorf61	0	genome.wustl.edu	37	X	115592931	115592931	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	115592931	115592931	A	G	SNP	CXorf61	ENST00000371894	human	ensembl	74_37	-1	known	missense	c.319	p.S107P	0.000	NULL	NULL	-	no_errors	CXorf61	HGNC	ENSG00000204019				216	0	0	175	12	6.41711
WDR44	0	genome.wustl.edu	37	X	117528054	117528054	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	117528054	117528054	C	T	SNP	WDR44	ENST00000254029	human	ensembl	74_37	+1	known	missense	c.863	p.T288I	0.020	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR44	HGNC	ENSG00000131725				117	0	0	97	6	5.82524
DOCK11	0	genome.wustl.edu	37	X	117695459	117695459	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	117695459	117695459	C	T	SNP	DOCK11	ENST00000276202	human	ensembl	74_37	+1	known	silent	c.672	p.D224	0.533	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DOCK_C,pfam_DOCK_C/D_N,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK11	HGNC	ENSG00000147251				136	0	0	83	22	20.9524
DOCK11	0	genome.wustl.edu	37	X	117742033	117742033	+	Splice_Site	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	117742033	117742033	A	G	SNP	DOCK11	ENST00000276202	human	ensembl	74_37	+1	known	splice_site	c.2682-2	e25-2	1.000	-	-	-	no_errors	DOCK11	HGNC	ENSG00000147251				128	0	0	71	22	23.6559
SLC25A43	0	genome.wustl.edu	37	X	118586848	118586848	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	118586848	118586848	T	C	SNP	SLC25A43	ENST00000336249	human	ensembl	74_37	+1	known	missense	c.673	p.Y225H	0.996	NULL	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	-	no_errors	SLC25A43	HGNC	ENSG00000077713				123	0	0	83	8	8.79121
UBE2A	0	genome.wustl.edu	37	X	118708930	118708930	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	118708930	118708930	C	T	SNP	UBE2A	ENST00000371558	human	ensembl	74_37	+1	known	silent	c.111	p.N37	1.000	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	-	no_errors	UBE2A	HGNC	ENSG00000077721				60	0	0	60	7	10.4478
NKRF	0	genome.wustl.edu	37	X	118723331	118723331	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	118723331	118723331	A	G	SNP	NKRF	ENST00000542113	human	ensembl	74_37	-1	known	missense	c.2102	p.M701T	1.000	NULL	pfam_G_patch_dom,pfam_R3H_ss-bd,smart_dsRNA-bd_dom,smart_G_patch_dom,smart_R3H_ss-bd,pfscan_G_patch_dom,pfscan_R3H_ss-bd	-	no_errors	NKRF	HGNC	ENSG00000186416				104	0	0	95	9	8.65385
SEPT6	0	genome.wustl.edu	37	X	118797509	118797509	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	118797509	118797509	C	T	SNP	SEPT6	ENST00000394617	human	ensembl	74_37	-1	known	missense	c.367	p.V123M	1.000	pfam_Cell_div_GTP-bd,superfamily_P-loop_NTPase,pirsf_Septin	pfam_Cell_div_GTP-bd,superfamily_P-loop_NTPase,pirsf_Septin	-	no_errors	SEPT6	HGNC	ENSG00000125354				411	0	0	336	27	7.43802
UPF3B	0	genome.wustl.edu	37	X	118968985	118968985	+	Silent	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	118968985	118968985	A	T	SNP	UPF3B	ENST00000276201	human	ensembl	74_37	-1	known	silent	c.1308	p.R436	0.980	NULL	pfam_Nonsense_mediated_decay_UPF3	-	no_errors	UPF3B	HGNC	ENSG00000125351				147	0	0	111	19	14.6154
RNF113A	0	genome.wustl.edu	37	X	119005489	119005489	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	119005489	119005489	G	A	SNP	RNF113A	ENST00000371442	human	ensembl	74_37	-1	known	missense	c.88	p.R30C	0.903	NULL	pfam_Znf_CCCH,smart_Znf_CCCH,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF113A	HGNC	ENSG00000125352				137	0	0	160	9	5.32544
CT47B1	0	genome.wustl.edu	37	X	120008858	120008858	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	120008858	120008858	C	T	SNP	CT47B1	ENST00000371311	human	ensembl	74_37	-1	known	missense	c.667	p.A223T	0.000	NULL	NULL	-	no_errors	CT47B1	HGNC	ENSG00000236446				138	0	0	144	10	6.49351
GLUD2	0	genome.wustl.edu	37	X	120181790	120181790	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	120181790	120181790	G	C	SNP	GLUD2	ENST00000328078	human	ensembl	74_37	+1	known	missense	c.252	p.K84N	1.000	NULL	pfam_Glu/Leu/Phe/Val_DH_C,pfam_Glu/Leu/Phe/Val_DH_dimer_dom,smart_Glu/Leu/Phe/Val_DH_C,prints_Glu/Leu/Phe/Val_DH	-	no_errors	GLUD2	HGNC	ENSG00000182890				122	0	0	104	6	5.45455
GLUD2	0	genome.wustl.edu	37	X	120182575	120182575	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	120182575	120182575	A	C	SNP	GLUD2	ENST00000328078	human	ensembl	74_37	+1	known	missense	c.1037	p.K346T	1.000	pfam_Glu/Leu/Phe/Val_DH_C,smart_Glu/Leu/Phe/Val_DH_C	pfam_Glu/Leu/Phe/Val_DH_C,pfam_Glu/Leu/Phe/Val_DH_dimer_dom,smart_Glu/Leu/Phe/Val_DH_C,prints_Glu/Leu/Phe/Val_DH	-	no_errors	GLUD2	HGNC	ENSG00000182890				260	0	0	200	19	8.6758
THOC2	0	genome.wustl.edu	37	X	122830676	122830676	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	122830676	122830676	G	A	SNP	THOC2	ENST00000433883	human	ensembl	74_37	-1	known	nonsense	c.355	p.Q119*	1.000	NULL	NULL	-	no_errors	THOC2	HGNC	ENSG00000125676				132	0	0	99	10	9.17431
TENM1	0	genome.wustl.edu	37	X	123631108	123631108	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	123631108	123631108	T	C	SNP	TENM1	ENST00000422452	human	ensembl	74_37	-1	known	missense	c.3453	p.I1151M	1.000	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,smart_EG-like_dom,pfscan_EG-like_dom,tigrfam_YD	-	no_errors	TENM1	HGNC	ENSG00000009694				48	0	0	24	7	22.5806
TENM1	0	genome.wustl.edu	37	X	123663719	123663719	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	123663719	123663719	A	G	SNP	TENM1	ENST00000422452	human	ensembl	74_37	-1	known	silent	c.2766	p.D922	1.000	superfamily_CarboxyPept-like_regulatory	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,smart_EG-like_dom,pfscan_EG-like_dom,tigrfam_YD	-	no_errors	TENM1	HGNC	ENSG00000009694				141	0	0	118	7	5.6
TENM1	0	genome.wustl.edu	37	X	124028174	124028174	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	124028174	124028174	T	G	SNP	TENM1	ENST00000422452	human	ensembl	74_37	-1	known	missense	c.506	p.D169A	1.000	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,smart_EG-like_dom,pfscan_EG-like_dom,tigrfam_YD	-	no_errors	TENM1	HGNC	ENSG00000009694				99	0	0	75	6	7.40741
DCAF12L2	0	genome.wustl.edu	37	X	125298619	125298619	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	125298619	125298619	G	A	SNP	DCAF12L2	ENST00000360028	human	ensembl	74_37	-1	known	missense	c.1289	p.A430V	0.996	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF12L2	HGNC	ENSG00000198354				159	0	0	153	15	8.92857
DCAF12L2	0	genome.wustl.edu	37	X	125299872	125299872	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	125299872	125299872	T	G	SNP	DCAF12L2	ENST00000360028	human	ensembl	74_37	-1	known	missense	c.36	p.K12N	0.986	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF12L2	HGNC	ENSG00000198354				31	0	0	28	4	12.5
DCAF12L1	0	genome.wustl.edu	37	X	125685932	125685932	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	125685932	125685932	C	A	SNP	DCAF12L1	ENST00000371126	human	ensembl	74_37	-1	known	missense	c.660	p.W220C	0.986	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF12L1	HGNC	ENSG00000198889				45	0	0	58	6	9.375
ACTRT1	0	genome.wustl.edu	37	X	127185200	127185200	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	127185200	127185200	T	C	SNP	ACTRT1	ENST00000371124	human	ensembl	74_37	-1	known	missense	c.986	p.K329R	1.000	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,smart_Actin-related,prints_Actin-related	-	no_errors	ACTRT1	HGNC	ENSG00000123165				123	0	0	112	8	6.66667
FRMPD4	0	genome.wustl.edu	37	X	12734369	12734369	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	12734369	12734369	A	G	SNP	FRMPD4	ENST00000380682	human	ensembl	74_37	+1	known	missense	c.1791	p.I597M	0.037	NULL	pfam_FERM_central,pfam_PDZ,superfamily_FERM_central,superfamily_PDZ,smart_PDZ,smart_Band_41_domain,pfscan_FERM_domain,pfscan_PDZ,pfscan_WW_dom	-	no_errors	FRMPD4	HGNC	ENSG00000169933				125	0	0	109	8	6.83761
FRMPD4	0	genome.wustl.edu	37	X	12736059	12736059	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	12736059	12736059	A	G	SNP	FRMPD4	ENST00000380682	human	ensembl	74_37	+1	known	silent	c.3114	p.A1038	0.000	NULL	pfam_FERM_central,pfam_PDZ,superfamily_FERM_central,superfamily_PDZ,smart_PDZ,smart_Band_41_domain,pfscan_FERM_domain,pfscan_PDZ,pfscan_WW_dom	-	no_errors	FRMPD4	HGNC	ENSG00000169933				93	0	0	94	9	8.73786
XPNPEP2	0	genome.wustl.edu	37	X	128877956	128877956	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	128877956	128877956	T	C	SNP	XPNPEP2	ENST00000371106	human	ensembl	74_37	+1	known	missense	c.143	p.V48A	0.998	NULL	pfam_Pept_M24_structural-domain,pfam_Creatinase,superfamily_Pept_M24_structural-domain	-	no_errors	XPNPEP2	HGNC	ENSG00000122121				169	0	0	117	34	22.5166
TLR7	0	genome.wustl.edu	37	X	12903718	12903718	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	12903718	12903718	C	T	SNP	TLR7	ENST00000380659	human	ensembl	74_37	+1	known	missense	c.91	p.P31S	1.000	NULL	pfam_Leu-rich_rpt,pfam_TIR_dom,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR7	HGNC	ENSG00000196664				197	0	0	164	21	11.3514
UTP14A	0	genome.wustl.edu	37	X	129041389	129041389	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	129041389	129041389	G	C	SNP	UTP14A	ENST00000394422	human	ensembl	74_37	+1	known	missense	c.73	p.D25H	0.132	NULL	pfam_SSU_processome_Utp14	-	no_errors	UTP14A	HGNC	ENSG00000156697				106	0	0	56	12	17.6471
TLR7	0	genome.wustl.edu	37	X	12904491	12904491	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	12904491	12904491	G	A	SNP	TLR7	ENST00000380659	human	ensembl	74_37	+1	known	silent	c.864	p.A288	0.000	NULL	pfam_Leu-rich_rpt,pfam_TIR_dom,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR7	HGNC	ENSG00000196664				192	1	0.518135	133	24	15.2866
BCORL1	0	genome.wustl.edu	37	X	129147516	129147516	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	129147516	129147516	G	A	SNP	BCORL1	ENST00000303743	human	ensembl	74_37	+1	known	silent	c.768	p.P256	0.002	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	BCORL1	HGNC	ENSG00000085185				155	0	0	165	15	8.33333
BCORL1	0	genome.wustl.edu	37	X	129159025	129159025	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	129159025	129159025	T	C	SNP	BCORL1	ENST00000303743	human	ensembl	74_37	+1	known	missense	c.3749	p.F1250S	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	BCORL1	HGNC	ENSG00000085185				139	0	0	163	11	6.32184
BCORL1	0	genome.wustl.edu	37	X	129185849	129185849	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	129185849	129185849	T	G	SNP	BCORL1	ENST00000303743	human	ensembl	74_37	+1	known	missense	c.4933	p.F1645V	0.414	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	BCORL1	HGNC	ENSG00000085185				243	0	0	220	16	6.77966
ZNF280C	0	genome.wustl.edu	37	X	129339307	129339307	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	129339307	129339307	G	A	SNP	ZNF280C	ENST00000370978	human	ensembl	74_37	-1	known	missense	c.2125	p.R709C	1.000	smart_Znf_C2H2-like	smart_Znf_C2H2-like	-	no_errors	ZNF280C	HGNC	ENSG00000056277				114	0	0	56	13	18.8406
ZNF280C	0	genome.wustl.edu	37	X	129362957	129362957	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	129362957	129362957	A	G	SNP	ZNF280C	ENST00000370978	human	ensembl	74_37	-1	known	missense	c.1141	p.F381L	1.000	NULL	smart_Znf_C2H2-like	-	no_errors	ZNF280C	HGNC	ENSG00000056277				170	0	0	137	14	9.27152
TLR8	0	genome.wustl.edu	37	X	12937960	12937960	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	12937960	12937960	C	T	SNP	TLR8	ENST00000218032	human	ensembl	74_37	+1	known	silent	c.801	p.C267	0.025	NULL	pfam_Leu-rich_rpt,pfam_TIR_dom,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR8	HGNC	ENSG00000101916				133	0	0	99	8	7.47664
ENOX2	0	genome.wustl.edu	37	X	129804045	129804045	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	129804045	129804045	C	A	SNP	ENOX2	ENST00000338144	human	ensembl	74_37	-1	known	missense	c.675	p.E225D	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	ENOX2	HGNC	ENSG00000165675				105	0	0	79	8	9.1954
IGSF1	0	genome.wustl.edu	37	X	130408638	130408638	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	130408638	130408638	C	T	SNP	IGSF1	ENST00000370903	human	ensembl	74_37	-1	known	missense	c.3701	p.R1234H	0.690	smart_Ig_sub,smart_Ig_sub2	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	IGSF1	HGNC	ENSG00000147255				240	0	0	206	12	5.50459
IGSF1	0	genome.wustl.edu	37	X	130416641	130416641	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	130416641	130416641	T	C	SNP	IGSF1	ENST00000370903	human	ensembl	74_37	-1	known	silent	c.1023	p.L341	0.049	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	IGSF1	HGNC	ENSG00000147255				104	0	0	88	10	10.2041
FRMD7	0	genome.wustl.edu	37	X	131211940	131211940	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	131211940	131211940	T	A	SNP	FRMD7	ENST00000298542	human	ensembl	74_37	-1	known	missense	c.2105	p.D702V	0.996	NULL	pfam_FERM_PH-like_C,pfam_FERM_N,pfam_FERM-adjacent,pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,prints_Band_41_fam,pfscan_FERM_domain	-	no_errors	FRMD7	HGNC	ENSG00000165694				109	0	0	82	6	6.81818
RAP2C	0	genome.wustl.edu	37	X	131348297	131348297	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	131348297	131348297	A	T	SNP	RAP2C	ENST00000342983	human	ensembl	74_37	-1	known	missense	c.451	p.S151T	1.000	pfam_Small_GTPase,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAP2C	HGNC	ENSG00000123728				157	0	0	137	17	11.039
HS6ST2	0	genome.wustl.edu	37	X	132091164	132091164	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	132091164	132091164	G	A	SNP	HS6ST2	ENST00000521489	human	ensembl	74_37	-1	known	missense	c.619	p.R207C	0.968	NULL	pfam_Sulfotransferase,superfamily_P-loop_NTPase	-	no_errors	HS6ST2	HGNC	ENSG00000171004				56	0	0	41	15	26.7857
USP26	0	genome.wustl.edu	37	X	132160099	132160099	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	132160099	132160099	G	A	SNP	USP26	ENST00000370832	human	ensembl	74_37	-1	known	missense	c.2150	p.T717I	0.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP26	HGNC	ENSG00000134588				153	0	0	118	14	10.6061
USP26	0	genome.wustl.edu	37	X	132161101	132161101	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	132161101	132161101	G	A	SNP	USP26	ENST00000370832	human	ensembl	74_37	-1	known	missense	c.1148	p.A383V	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP26	HGNC	ENSG00000134588				181	0	0	131	9	6.42857
ATXN3L	0	genome.wustl.edu	37	X	13337200	13337200	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	13337200	13337200	T	A	SNP	ATXN3L	ENST00000380622	human	ensembl	74_37	-1	known	missense	c.854	p.D285V	0.982	prints_Josephin	pfam_Josephin,pfam_Ubiquitin-int_motif,smart_Ubiquitin-int_motif,prints_Josephin,pfscan_Josephin,pfscan_Ubiquitin-int_motif	-	no_errors	ATXN3L	HGNC	ENSG00000123594				317	0	0	256	23	8.24373
ATXN3L	0	genome.wustl.edu	37	X	13337424	13337424	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	13337424	13337424	T	C	SNP	ATXN3L	ENST00000380622	human	ensembl	74_37	-1	known	silent	c.630	p.E210	0.002	prints_Josephin	pfam_Josephin,pfam_Ubiquitin-int_motif,smart_Ubiquitin-int_motif,prints_Josephin,pfscan_Josephin,pfscan_Ubiquitin-int_motif	-	no_errors	ATXN3L	HGNC	ENSG00000123594				392	0	0	323	27	7.71429
MIR450A2	0	genome.wustl.edu	37	X	133674582	133674582	+	RNA	SNP	C	C	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	133674582	133674582	C	G	SNP	MIR450A2	ENST00000385022	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.697	-	-	-	no_errors	MIR450A2	HGNC	ENSG00000207755				125	0	0	81	5	5.81395
FAM127C	0	genome.wustl.edu	37	X	134156176	134156176	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	134156176	134156176	A	G	SNP	FAM127C	ENST00000391440	human	ensembl	74_37	-1	known	missense	c.314	p.F105S	0.993	NULL	NULL	-	no_errors	FAM127C	HGNC	ENSG00000212747				50	0	0	58	5	7.93651
FAM127B	0	genome.wustl.edu	37	X	134186058	134186058	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	134186058	134186058	A	G	SNP	FAM127B	ENST00000370775	human	ensembl	74_37	-1	known	silent	c.81	p.I27	0.792	NULL	NULL	-	no_errors	FAM127B	HGNC	ENSG00000203950				127	0	0	124	9	6.76692
ZNF75D	0	genome.wustl.edu	37	X	134426266	134426266	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	134426266	134426266	A	G	SNP	ZNF75D	ENST00000370766	human	ensembl	74_37	-1	known	missense	c.545	p.V182A	0.058	NULL	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF75D	HGNC	ENSG00000186376				127	0	0	104	14	11.8644
DDX26B	0	genome.wustl.edu	37	X	134680680	134680680	+	Silent	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	134680680	134680680	T	A	SNP	DDX26B	ENST00000370752	human	ensembl	74_37	+1	known	silent	c.483	p.P161	1.000	pfscan_VWF_A	pfscan_VWF_A	-	no_errors	DDX26B	HGNC	ENSG00000165359				229	0	0	158	16	9.1954
SAGE1	0	genome.wustl.edu	37	X	134988582	134988582	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	134988582	134988582	C	T	SNP	SAGE1	ENST00000324447	human	ensembl	74_37	+1	known	missense	c.608	p.T203I	0.026	NULL	NULL	-	no_errors	SAGE1	HGNC	ENSG00000181433				179	0	0	163	9	5.23256
MMGT1	0	genome.wustl.edu	37	X	135047292	135047292	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	135047292	135047292	C	T	SNP	MMGT1	ENST00000433339	human	ensembl	74_37	-1	known	missense	c.482	p.R161H	1.000	pfam_Magnesium_transport	pfam_Magnesium_transport	-	no_errors	MMGT1	HGNC	ENSG00000169446				290	0	0	168	59	25.9912
MAP7D3	0	genome.wustl.edu	37	X	135308164	135308164	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	135308164	135308164	G	A	SNP	MAP7D3	ENST00000370663	human	ensembl	74_37	-1	known	silent	c.1989	p.D663	0.000	pfam_MAP7	pfam_MAP7	-	no_errors	MAP7D3	HGNC	ENSG00000129680				137	1	0.724638	71	17	19.3182
GPR112	0	genome.wustl.edu	37	X	135405392	135405392	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	135405392	135405392	C	T	SNP	GPR112	ENST00000370652	human	ensembl	74_37	+1	known	missense	c.526	p.R176C	0.001	pfam_Pentaxin,superfamily_ConA-like_lec_gl_sf,smart_Pentaxin	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Pentaxin,superfamily_ConA-like_lec_gl_sf,smart_Pentaxin,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR112	HGNC	ENSG00000156920				195	0	0	159	21	11.6667
GPR112	0	genome.wustl.edu	37	X	135427956	135427956	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	135427956	135427956	C	T	SNP	GPR112	ENST00000370652	human	ensembl	74_37	+1	known	silent	c.2091	p.S697	0.017	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Pentaxin,superfamily_ConA-like_lec_gl_sf,smart_Pentaxin,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR112	HGNC	ENSG00000156920				129	0	0	93	19	16.9643
GPR112	0	genome.wustl.edu	37	X	135429100	135429100	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	135429100	135429100	C	T	SNP	GPR112	ENST00000370652	human	ensembl	74_37	+1	known	missense	c.3235	p.P1079S	0.001	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Pentaxin,superfamily_ConA-like_lec_gl_sf,smart_Pentaxin,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR112	HGNC	ENSG00000156920				382	0	0	292	25	7.88644
GPR112	0	genome.wustl.edu	37	X	135430773	135430773	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	135430773	135430773	A	G	SNP	GPR112	ENST00000370652	human	ensembl	74_37	+1	known	silent	c.4908	p.A1636	0.000	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Pentaxin,superfamily_ConA-like_lec_gl_sf,smart_Pentaxin,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR112	HGNC	ENSG00000156920				255	2	0.77821	206	22	9.64912
GPR112	0	genome.wustl.edu	37	X	135482127	135482127	+	Nonsense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	135482127	135482127	T	A	SNP	GPR112	ENST00000370652	human	ensembl	74_37	+1	known	nonsense	c.8427	p.C2809*	1.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Pentaxin,superfamily_ConA-like_lec_gl_sf,smart_Pentaxin,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR112	HGNC	ENSG00000156920				180	0	0	131	13	9.02778
HTATSF1	0	genome.wustl.edu	37	X	135593206	135593206	+	Silent	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	135593206	135593206	A	T	SNP	HTATSF1	ENST00000218364	human	ensembl	74_37	+1	known	silent	c.1302	p.T434	0.008	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HTATSF1	HGNC	ENSG00000102241				287	0	0	206	21	9.2511
VGLL1	0	genome.wustl.edu	37	X	135631112	135631112	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	135631112	135631112	C	T	SNP	VGLL1	ENST00000370634	human	ensembl	74_37	+1	known	silent	c.579	p.G193	0.000	NULL	pfam_Vg_Tdu,smart_TDU_repeat	-	no_errors	VGLL1	HGNC	ENSG00000102243				98	0	0	98	7	6.66667
CD40LG	0	genome.wustl.edu	37	X	135732555	135732555	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	135732555	135732555	A	G	SNP	CD40LG	ENST00000370629	human	ensembl	74_37	+1	known	missense	c.287	p.K96R	0.998	pirsf_TNF_ligand_5	pfam_TNF_dom,superfamily_Tumour_necrosis_fac-like_dom,smart_TNF_dom,pirsf_TNF_ligand_5,pfscan_TNF_dom,prints_TNF_ligand_5	-	no_errors	CD40LG	HGNC	ENSG00000102245				109	0	0	68	5	6.84932
EGFL6	0	genome.wustl.edu	37	X	13624572	13624572	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	13624572	13624572	T	C	SNP	EGFL6	ENST00000380602	human	ensembl	74_37	+1	known	missense	c.595	p.Y199H	1.000	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_MAM_dom,pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,superfamily_ConA-like_lec_gl_sf,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_MAM_dom,pfscan_EG-like_dom,pfscan_MAM_dom	-	no_errors	EGFL6	HGNC	ENSG00000198759				185	0	0	134	17	11.2583
EGFL6	0	genome.wustl.edu	37	X	13645222	13645222	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	13645222	13645222	A	C	SNP	EGFL6	ENST00000380602	human	ensembl	74_37	+1	known	missense	c.1381	p.S461R	1.000	pfam_MAM_dom,superfamily_ConA-like_lec_gl_sf,smart_MAM_dom,pfscan_MAM_dom	pfam_MAM_dom,pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,superfamily_ConA-like_lec_gl_sf,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_MAM_dom,pfscan_EG-like_dom,pfscan_MAM_dom	-	no_errors	EGFL6	HGNC	ENSG00000198759				166	0	0	97	29	23.0159
ZIC3	0	genome.wustl.edu	37	X	136651095	136651095	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	136651095	136651095	T	C	SNP	ZIC3	ENST00000287538	human	ensembl	74_37	+1	known	silent	c.1095	p.C365	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZIC3	HGNC	ENSG00000156925				303	0	0	262	17	6.09319
OFD1	0	genome.wustl.edu	37	X	13753379	13753379	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	13753379	13753379	A	G	SNP	OFD1	ENST00000340096	human	ensembl	74_37	+1	known	missense	c.25	p.T9A	0.000	NULL	superfamily_Lipoprotein_6,smart_LisH_dimerisation,pfscan_LisH_dimerisation	-	no_errors	OFD1	HGNC	ENSG00000046651				83	0	0	64	6	8.57143
MCF2	0	genome.wustl.edu	37	X	138697061	138697061	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	138697061	138697061	G	A	SNP	MCF2	ENST00000370578	human	ensembl	74_37	-1	known	missense	c.1777	p.P593S	0.293	NULL	pfam_DH-domain,superfamily_DH-domain,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	MCF2	HGNC	ENSG00000101977				254	0	0	202	16	7.33945
MCF2	0	genome.wustl.edu	37	X	138713569	138713569	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	138713569	138713569	C	T	SNP	MCF2	ENST00000370578	human	ensembl	74_37	-1	known	nonsense	c.708	p.W236*	1.000	superfamily_CRAL-TRIO_dom	pfam_DH-domain,superfamily_DH-domain,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	MCF2	HGNC	ENSG00000101977				236	0	0	166	13	7.26257
ATP11C	0	genome.wustl.edu	37	X	138840023	138840023	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	138840023	138840023	G	C	SNP	ATP11C	ENST00000327569	human	ensembl	74_37	-1	known	missense	c.2653	p.L885V	1.000	tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP11C	HGNC	ENSG00000101974				42	0	0	25	5	16.6667
ATP11C	0	genome.wustl.edu	37	X	138840024	138840024	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	138840024	138840024	G	T	SNP	ATP11C	ENST00000327569	human	ensembl	74_37	-1	known	missense	c.2652	p.N884K	1.000	tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP11C	HGNC	ENSG00000101974				42	0	0	25	4	13.7931
CXorf66	0	genome.wustl.edu	37	X	139038105	139038105	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	139038105	139038105	A	G	SNP	CXorf66	ENST00000370540	human	ensembl	74_37	-1	known	missense	c.1036	p.C346R	0.050	NULL	NULL	-	no_errors	CXorf66	HGNC	ENSG00000203933				99	0	0	89	7	7.29167
SOX3	0	genome.wustl.edu	37	X	139586639	139586639	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	139586639	139586639	C	T	SNP	SOX3	ENST00000370536	human	ensembl	74_37	-1	known	missense	c.587	p.R196H	1.000	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	pfam_HMG_box_dom,pfam_TF_SOX,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	SOX3	HGNC	ENSG00000134595				76	0	0	64	22	25.5814
SPANXD	0	genome.wustl.edu	37	X	140785771	140785771	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	140785771	140785771	T	A	SNP	SPANXD	ENST00000370515	human	ensembl	74_37	-1	known	missense	c.145	p.T49S	0.000	pfam_SPANX_prot	pfam_SPANX_prot	-	no_errors	SPANXD	HGNC	ENSG00000196406				331	0	0	266	21	7.31707
MAGEC3	0	genome.wustl.edu	37	X	140969268	140969268	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	140969268	140969268	T	C	SNP	MAGEC3	ENST00000298296	human	ensembl	74_37	+1	known	missense	c.595	p.Y199H	0.000	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEC3	HGNC	ENSG00000165509				214	0	0	166	13	7.26257
MAGEC1	0	genome.wustl.edu	37	X	140995836	140995836	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	140995836	140995836	A	G	SNP	MAGEC1	ENST00000285879	human	ensembl	74_37	+1	known	silent	c.2646	p.S882	0.009	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEC1	HGNC	ENSG00000155495				355	0	0	220	42	16.0305
CSF2RA	0	genome.wustl.edu	37	X	1428459	1428459	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	1428459	1428459	A	G	SNP	CSF2RA	ENST00000355432	human	ensembl	74_37	+1	known	missense	c.1111	p.I371V	0.012	NULL	pfam_IL-6_rcpt_alpha-bd,superfamily_Fibronectin_type3	-	no_errors	CSF2RA	HGNC	ENSG00000198223				124	0	0	102	16	13.5593
UBE2NL	0	genome.wustl.edu	37	X	142967329	142967329	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	142967329	142967329	T	A	SNP	UBE2NL	ENST00000370494	human	ensembl	74_37	+1	known	missense	c.127	p.S43T	0.994	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	-	no_errors	UBE2NL	HGNC	ENSG00000102069				200	0	0	163	10	5.78035
MIR513B	0	genome.wustl.edu	37	X	146280611	146280611	+	RNA	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	146280611	146280611	A	G	SNP	MIR513B	ENST00000385136	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.509	-	-	-	no_errors	MIR513B	HGNC	ENSG00000207871				38	0	0	26	4	13.3333
MIR506	0	genome.wustl.edu	37	X	146312238	146312238	+	RNA	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	146312238	146312238	G	A	SNP	MIR506	ENST00000384998	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MIR506	HGNC	ENSG00000207731				151	0	0	114	9	7.31707
FMR1	0	genome.wustl.edu	37	X	147027084	147027084	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	147027084	147027084	G	A	SNP	FMR1	ENST00000370475	human	ensembl	74_37	+1	known	missense	c.1685	p.R562H	1.000	pfam_Frag_X_MRP_fam	pfam_Frag_X_MRP_fam,pfam_KH_dom_type_1,pfam_Agenet-like_dom,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	FMR1	HGNC	ENSG00000102081				49	0	0	36	5	12.1951
IL3RA	0	genome.wustl.edu	37	X	1471268	1471268	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	1471268	1471268	G	A	SNP	IL3RA	ENST00000331035	human	ensembl	74_37	+1	known	missense	c.485	p.R162H	0.000	pfam_IL-6_rcpt_alpha-bd,superfamily_Fibronectin_type3	pfam_IL-6_rcpt_alpha-bd,superfamily_Fibronectin_type3	-	no_errors	IL3RA	HGNC	ENSG00000185291				237	1	0.420168	238	30	11.194
AFF2	0	genome.wustl.edu	37	X	148037982	148037982	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	148037982	148037982	G	A	SNP	AFF2	ENST00000370460	human	ensembl	74_37	+1	known	missense	c.2407	p.V803M	1.000	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF2	HGNC	ENSG00000155966				159	0	0	136	10	6.84932
AFF2	0	genome.wustl.edu	37	X	148068943	148068943	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	148068943	148068943	G	A	SNP	AFF2	ENST00000370460	human	ensembl	74_37	+1	known	missense	c.3670	p.A1224T	0.265	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF2	HGNC	ENSG00000155966				149	0	0	138	8	5.47945
AFF2	0	genome.wustl.edu	37	X	148072815	148072815	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	148072815	148072815	G	A	SNP	AFF2	ENST00000370460	human	ensembl	74_37	+1	known	missense	c.3889	p.V1297I	1.000	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF2	HGNC	ENSG00000155966				181	0	0	129	38	22.7545
FANCB	0	genome.wustl.edu	37	X	14871245	14871245	+	Silent	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	14871245	14871245	A	C	SNP	FANCB	ENST00000324138	human	ensembl	74_37	-1	known	silent	c.1242	p.L414	0.817	NULL	NULL	-	no_errors	FANCB	HGNC	ENSG00000181544				142	0	0	86	6	6.52174
MAGEA11	0	genome.wustl.edu	37	X	148797265	148797265	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	148797265	148797265	T	G	SNP	MAGEA11	ENST00000355220	human	ensembl	74_37	+1	known	missense	c.194	p.V65G	0.000	NULL	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEA11	HGNC	ENSG00000185247				101	0	0	71	10	12.3457
MAMLD1	0	genome.wustl.edu	37	X	149638867	149638867	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	149638867	149638867	G	T	SNP	MAMLD1	ENST00000432680	human	ensembl	74_37	+1	known	missense	c.947	p.R316L	0.016	NULL	NULL	-	no_errors	MAMLD1	HGNC	ENSG00000013619				51	0	0	51	8	13.5593
MAMLD1	0	genome.wustl.edu	37	X	149671696	149671696	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	149671696	149671696	C	A	SNP	MAMLD1	ENST00000262858	human	ensembl	74_37	+1	known	nonsense	c.2193	p.Y731*	1.000	NULL	NULL	-	no_errors	MAMLD1	HGNC	ENSG00000013619				37	0	0	55	4	6.77966
MTM1	0	genome.wustl.edu	37	X	149814303	149814303	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	149814303	149814303	A	G	SNP	MTM1	ENST00000370396	human	ensembl	74_37	+1	known	missense	c.826	p.I276V	0.999	pfam_Myotubularin-like_Pase_dom	pfam_Myotubularin-like_Pase_dom,pfam_GRAM,smart_GRAM,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase	-	no_errors	MTM1	HGNC	ENSG00000171100				110	0	0	67	8	10.6667
SLC25A6	0	genome.wustl.edu	37	X	1505571	1505571	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	1505571	1505571	G	A	SNP	SLC25A6	ENST00000381401	human	ensembl	74_37	-1	known	missense	c.821	p.A274V	0.999	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier,prints_Aden_trnslctor,prints_Mit_uncoupling	-	no_errors	SLC25A6	HGNC	ENSG00000169100				196	0	0	197	23	10.4545
SLC25A6	0	genome.wustl.edu	37	X	1508486	1508486	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	1508486	1508486	G	T	SNP	SLC25A6	ENST00000381401	human	ensembl	74_37	-1	known	missense	c.246	p.F82L	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier,prints_Aden_trnslctor,prints_Mit_uncoupling	-	no_errors	SLC25A6	HGNC	ENSG00000169100				229	0	0	207	22	9.60699
CNGA2	0	genome.wustl.edu	37	X	150907014	150907014	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	150907014	150907014	C	T	SNP	CNGA2	ENST00000329903	human	ensembl	74_37	+1	known	missense	c.59	p.A20V	0.362	NULL	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGA2	HGNC	ENSG00000183862				135	0	0	114	9	7.31707
CNGA2	0	genome.wustl.edu	37	X	150911846	150911846	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	150911846	150911846	T	C	SNP	CNGA2	ENST00000329903	human	ensembl	74_37	+1	known	missense	c.871	p.C291R	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGA2	HGNC	ENSG00000183862				254	0	0	224	16	6.66667
MAGEA4	0	genome.wustl.edu	37	X	151092384	151092384	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	151092384	151092384	A	G	SNP	MAGEA4	ENST00000276344	human	ensembl	74_37	+1	known	missense	c.248	p.Q83R	0.000	pfam_Melanoma_ass_antigen_N	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEA4	HGNC	ENSG00000147381				113	0	0	112	8	6.66667
MAGEA10	0	genome.wustl.edu	37	X	151303862	151303862	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	151303862	151303862	A	G	SNP	MAGEA10	ENST00000244096	human	ensembl	74_37	-1	known	silent	c.231	p.D77	0.000	pfam_Melanoma_ass_antigen_N	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEA10	HGNC	ENSG00000124260				237	0	0	201	14	6.51163
GABRA3	0	genome.wustl.edu	37	X	151366166	151366166	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	151366166	151366166	G	A	SNP	GABRA3	ENST00000370314	human	ensembl	74_37	-1	known	silent	c.870	p.V290	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_GABBAa3_rcpt,prints_GABAA_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GABRA3	HGNC	ENSG00000011677				87	0	0	66	7	9.58904
MAGEA12	0	genome.wustl.edu	37	X	151900642	151900642	+	Silent	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	151900642	151900642	C	A	SNP	MAGEA12	ENST00000357916	human	ensembl	74_37	-1	known	silent	c.159	p.V53	0.000	pfam_Melanoma_ass_antigen_N	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEA12	HGNC	ENSG00000213401				114	0	0	120	9	6.97674
CETN2	0	genome.wustl.edu	37	X	151997191	151997191	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	151997191	151997191	G	T	SNP	CETN2	ENST00000370277	human	ensembl	74_37	-1	known	missense	c.319	p.L107M	1.000	smart_EF_hand_dom,pfscan_EF_hand_dom	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	CETN2	HGNC	ENSG00000147400				84	0	0	71	10	12.3457
NSDHL	0	genome.wustl.edu	37	X	152018925	152018925	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	152018925	152018925	T	A	SNP	NSDHL	ENST00000370274	human	ensembl	74_37	+1	known	missense	c.225	p.N75K	0.003	pfam_3Beta_OHSteriod_DH/Estase,pfam_Epimerase_deHydtase,pfam_dTDP_dehydrorham_reduct,pfam_Polysac_CapD-like,pfam_NmrA	pfam_3Beta_OHSteriod_DH/Estase,pfam_Epimerase_deHydtase,pfam_dTDP_dehydrorham_reduct,pfam_Male_sterile_NAD-bd,pfam_Polysac_CapD-like,pfam_NmrA	-	no_errors	NSDHL	HGNC	ENSG00000147383				286	0	0	253	18	6.64207
ZNF185	0	genome.wustl.edu	37	X	152128250	152128250	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	152128250	152128250	A	T	SNP	ZNF185	ENST00000370270	human	ensembl	74_37	+1	known	missense	c.1510	p.T504S	0.000	NULL	smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	ZNF185	HGNC	ENSG00000147394				35	0	0	42	5	10.6383
ASMTL	0	genome.wustl.edu	37	X	1522303	1522303	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	1522303	1522303	G	A	SNP	ASMTL	ENST00000381317	human	ensembl	74_37	-1	known	silent	c.1725	p.N575	1.000	pfam_O_MeTrfase_2	pfam_Maf,pfam_O_MeTrfase_2,tigrfam_Maf	-	no_errors	ASMTL	HGNC	ENSG00000169093				93	0	0	102	18	15
ATP2B3	0	genome.wustl.edu	37	X	152814246	152814246	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	152814246	152814246	G	A	SNP	ATP2B3	ENST00000263519	human	ensembl	74_37	+1	known	silent	c.1272	p.V424	1.000	pfam_ATPase_P-typ_transduc_dom_A,tigrfam_ATPase_P-typ_Ca-transp_plasma,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_plasma,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP2B3	HGNC	ENSG00000067842				81	0	0	86	6	6.52174
ATP2B3	0	genome.wustl.edu	37	X	152821585	152821585	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	152821585	152821585	C	T	SNP	ATP2B3	ENST00000263519	human	ensembl	74_37	+1	known	missense	c.2137	p.R713W	1.000	pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Ca-transp_plasma	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_plasma,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP2B3	HGNC	ENSG00000067842				112	0	0	108	10	8.47458
ATP2B3	0	genome.wustl.edu	37	X	152835151	152835151	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	152835151	152835151	A	C	SNP	ATP2B3	ENST00000359149	human	ensembl	74_37	+1	known	missense	c.3433	p.T1145P	1.000	pfam_ATP_Ca_trans_C	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,pfam_ATP_Ca_trans_C,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_plasma,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP2B3	HGNC	ENSG00000067842				257	1	0.387597	207	19	8.40708
SLC6A8	0	genome.wustl.edu	37	X	152958731	152958731	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	152958731	152958731	C	T	SNP	SLC6A8	ENST00000253122	human	ensembl	74_37	+1	known	missense	c.926	p.A309V	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_creatine	-	no_errors	SLC6A8	HGNC	ENSG00000130821				68	0	0	68	5	6.84932
ABCD1	0	genome.wustl.edu	37	X	152991452	152991452	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	152991452	152991452	C	T	SNP	ABCD1	ENST00000218104	human	ensembl	74_37	+1	known	missense	c.731	p.S244L	0.952	pfam_ABC_Peroxi_TM,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom,tigrfam_FA_transporter	pfam_ABC_Peroxi_TM,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,tigrfam_FA_transporter	-	no_errors	ABCD1	HGNC	ENSG00000101986				35	0	0	36	7	16.2791
PLXNB3	0	genome.wustl.edu	37	X	153037095	153037095	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	153037095	153037095	G	A	SNP	PLXNB3	ENST00000538966	human	ensembl	74_37	+1	known	silent	c.2571	p.A857	0.000	superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_IPT	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT,pfam_Plexin_repeat,pfam_Semap_dom,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNB3	HGNC	ENSG00000198753				27	0	0	31	3	8.82353
ASB11	0	genome.wustl.edu	37	X	15306011	15306011	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	15306011	15306011	A	G	SNP	ASB11	ENST00000480796	human	ensembl	74_37	-1	known	missense	c.839	p.L280P	0.994	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C	-	no_errors	ASB11	HGNC	ENSG00000165192				56	0	0	48	4	7.69231
PDZD4	0	genome.wustl.edu	37	X	153095697	153095697	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	153095697	153095697	C	T	SNP	PDZD4	ENST00000164640	human	ensembl	74_37	-1	known	silent	c.57	p.L19	0.980	superfamily_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PDZD4	HGNC	ENSG00000067840				58	0	0	63	6	8.69565
L1CAM	0	genome.wustl.edu	37	X	153132191	153132191	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	153132191	153132191	C	T	SNP	L1CAM	ENST00000543994	human	ensembl	74_37	-1	known	missense	c.2350	p.V784M	0.976	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	L1CAM	HGNC	ENSG00000198910				94	0	0	84	21	20
L1CAM	0	genome.wustl.edu	37	X	153133891	153133891	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	153133891	153133891	C	T	SNP	L1CAM	ENST00000543994	human	ensembl	74_37	-1	known	silent	c.1575	p.G525	0.889	pfam_Ig_I-set,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	L1CAM	HGNC	ENSG00000198910				161	0	0	160	39	19.598
L1CAM	0	genome.wustl.edu	37	X	153136295	153136295	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	153136295	153136295	C	A	SNP	L1CAM	ENST00000543994	human	ensembl	74_37	-1	known	missense	c.650	p.G217V	0.804	smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	L1CAM	HGNC	ENSG00000198910				95	0	0	87	6	6.45161
AVPR2	0	genome.wustl.edu	37	X	153171085	153171085	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	153171085	153171085	C	T	SNP	AVPR2	ENST00000337474	human	ensembl	74_37	+1	known	missense	c.125	p.A42V	1.000	prints_Vasoprsn_rcpt,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Vprsn_rcpt_V2,prints_Vasoprsn_rcpt,prints_GPCR_Rhodpsn	-	no_errors	AVPR2	HGNC	ENSG00000126895				23	0	0	36	5	12.1951
AVPR2	0	genome.wustl.edu	37	X	153171979	153171979	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	153171979	153171979	G	A	SNP	AVPR2	ENST00000337474	human	ensembl	74_37	+1	known	missense	c.913	p.A305T	0.372	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Vprsn_rcpt_V2,prints_Vasoprsn_rcpt,prints_GPCR_Rhodpsn	-	no_errors	AVPR2	HGNC	ENSG00000126895				206	0	0	133	46	25.6983
RENBP	0	genome.wustl.edu	37	X	153209857	153209857	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	153209857	153209857	T	G	SNP	RENBP	ENST00000393700	human	ensembl	74_37	-1	known	missense	c.41	p.E14A	0.820	NULL	pfam_AGE/RnBP,superfamily_6-hairpin_glycosidase-like	-	no_errors	RENBP	HGNC	ENSG00000102032				95	0	0	73	20	21.5054
MECP2	0	genome.wustl.edu	37	X	153295906	153295906	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	153295906	153295906	C	T	SNP	MECP2	ENST00000303391	human	ensembl	74_37	-1	known	missense	c.1373	p.R458H	1.000	pirsf_Me_CpG-bd_MeCP2	pfam_Methyl_CpG_DNA-bd,superfamily_DNA-bd_dom,superfamily_Ig_E-set,smart_Methyl_CpG_DNA-bd,pirsf_Me_CpG-bd_MeCP2,pfscan_Methyl_CpG_DNA-bd	-	no_errors	MECP2	HGNC	ENSG00000169057				400	0	0	317	78	19.7468
MECP2	0	genome.wustl.edu	37	X	153298000	153298000	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	153298000	153298000	T	C	SNP	MECP2	ENST00000303391	human	ensembl	74_37	-1	known	missense	c.35	p.K12R	1.000	pirsf_Me_CpG-bd_MeCP2	pfam_Methyl_CpG_DNA-bd,superfamily_DNA-bd_dom,superfamily_Ig_E-set,smart_Methyl_CpG_DNA-bd,pirsf_Me_CpG-bd_MeCP2,pfscan_Methyl_CpG_DNA-bd	-	no_errors	MECP2	HGNC	ENSG00000169057				141	0	0	108	13	10.7438
TKTL1	0	genome.wustl.edu	37	X	153533696	153533696	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	153533696	153533696	G	A	SNP	TKTL1	ENST00000369915	human	ensembl	74_37	+1	known	missense	c.175	p.V59M	1.000	pfam_Transketolase_N	pfam_Transketolase_N,pfam_Transketolase-like_Pyr-bd,pfam_Transketolase_C,pfam_DH_E1,superfamily_Transketo_C/Pyr-ferredox_oxred,smart_Transketolase-like_Pyr-bd	-	no_errors	TKTL1	HGNC	ENSG00000007350				104	0	0	73	6	7.59494
FLNA	0	genome.wustl.edu	37	X	153579955	153579955	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	153579955	153579955	G	A	SNP	FLNA	ENST00000369850	human	ensembl	74_37	-1	known	silent	c.7017	p.S2339	1.000	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNA	HGNC	ENSG00000196924				49	0	0	33	15	31.25
RPL10	0	genome.wustl.edu	37	X	153626864	153626864	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	153626864	153626864	G	A	SNP	RPL10	ENST00000344746	human	ensembl	74_37	+1	known	missense	c.4	p.G2S	1.000	pirsf_Ribosomal_L10e,tigrfam_Ribosomal_L10e	pfam_Ribosomal_L10e/L16,superfamily_Ribosomal_L10e/L16,pirsf_Ribosomal_L10e,tigrfam_Ribosomal_L10e	-	no_errors	RPL10	HGNC	ENSG00000147403				339	0	0	319	26	7.53623
PLXNA3	0	genome.wustl.edu	37	X	153696426	153696426	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	153696426	153696426	T	C	SNP	PLXNA3	ENST00000369682	human	ensembl	74_37	+1	known	silent	c.3822	p.A1274	0.297	NULL	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA3	HGNC	ENSG00000130827				47	0	0	61	4	6.15385
PLXNA3	0	genome.wustl.edu	37	X	153699468	153699468	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	153699468	153699468	T	C	SNP	PLXNA3	ENST00000369682	human	ensembl	74_37	+1	known	missense	c.5177	p.V1726A	1.000	pfam_Plexin_cytoplasmic_RasGAP_dom,superfamily_Rho_GTPase_activation_prot	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA3	HGNC	ENSG00000130827				108	0	0	94	18	16.0714
SLC10A3	0	genome.wustl.edu	37	X	153717218	153717218	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	153717218	153717218	C	T	SNP	SLC10A3	ENST00000263512	human	ensembl	74_37	-1	known	missense	c.62	p.G21D	0.000	NULL	pfam_BilAc/Na_symport,tigrfam_Bil_ac_transpt	-	no_errors	SLC10A3	HGNC	ENSG00000126903				25	0	0	21	8	27.5862
GAB3	0	genome.wustl.edu	37	X	153940895	153940895	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	153940895	153940895	G	A	SNP	GAB3	ENST00000424127	human	ensembl	74_37	-1	known	silent	c.678	p.C226	0.302	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	GAB3	HGNC	ENSG00000160219				90	0	0	74	9	10.8434
GAB3	0	genome.wustl.edu	37	X	153941521	153941521	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	153941521	153941521	A	C	SNP	GAB3	ENST00000424127	human	ensembl	74_37	-1	known	missense	c.557	p.V186G	1.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	GAB3	HGNC	ENSG00000160219				157	0	0	144	11	7.09677
MPP1	0	genome.wustl.edu	37	X	154009926	154009926	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	154009926	154009926	C	T	SNP	MPP1	ENST00000369534	human	ensembl	74_37	-1	known	silent	c.1098	p.V366	1.000	pfam_GK/Ca_channel_bsu,superfamily_P-loop_NTPase,smart_GK/Ca_channel_bsu,pfscan_Guanylate_kin-like	pfam_GK/Ca_channel_bsu,pfam_PDZ,pfam_SH3_2,pfam_SH3_domain,superfamily_P-loop_NTPase,superfamily_SH3_domain,superfamily_PDZ,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like	-	no_errors	MPP1	HGNC	ENSG00000130830				244	0	0	242	23	8.67925
ASMTL	0	genome.wustl.edu	37	X	1540734	1540734	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	1540734	1540734	A	G	SNP	ASMTL	ENST00000381317	human	ensembl	74_37	-1	known	silent	c.1062	p.G354	0.990	pfam_O_MeTrfase_2	pfam_Maf,pfam_O_MeTrfase_2,tigrfam_Maf	-	no_errors	ASMTL	HGNC	ENSG00000169093				309	0	0	301	33	9.88024
F8	0	genome.wustl.edu	37	X	154130417	154130417	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	154130417	154130417	T	C	SNP	F8	ENST00000360256	human	ensembl	74_37	-1	known	silent	c.6024	p.L2008	0.938	pfam_Cu-oxidase_2,superfamily_Cupredoxin	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	F8	HGNC	ENSG00000185010				127	0	0	94	13	12.1495
F8	0	genome.wustl.edu	37	X	154158736	154158736	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	154158736	154158736	T	G	SNP	F8	ENST00000360256	human	ensembl	74_37	-1	known	missense	c.3329	p.N1110T	0.002	NULL	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	F8	HGNC	ENSG00000185010				119	0	0	94	10	9.61538
VBP1	0	genome.wustl.edu	37	X	154448586	154448586	+	Splice_Site	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	154448586	154448586	T	C	SNP	VBP1	ENST00000286428	human	ensembl	74_37	+1	known	splice_site	c.218+2	e2+2	1.000	-	-	-	no_errors	VBP1	HGNC	ENSG00000155959				54	0	0	37	5	11.9048
TMLHE	0	genome.wustl.edu	37	X	154741379	154741379	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	154741379	154741379	G	A	SNP	TMLHE	ENST00000334398	human	ensembl	74_37	-1	known	missense	c.713	p.A238V	1.000	pfam_Taurine_dOase,tigrfam_Trimethyllysine_dOase	pfam_Taurine_dOase,pfam_DUF971,tigrfam_Trimethyllysine_dOase	-	no_errors	TMLHE	HGNC	ENSG00000185973				148	0	0	126	31	19.7452
BMX	0	genome.wustl.edu	37	X	15540632	15540632	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	15540632	15540632	G	A	SNP	BMX	ENST00000342014	human	ensembl	74_37	+1	known	missense	c.674	p.G225D	0.076	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_Pleckstrin_homology,pfam_Znf_Btk_motif,superfamily_Kinase-like_dom,smart_Pleckstrin_homology,smart_Znf_Btk_motif,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_Znf_Btk_motif,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,prints_Znf_Btk_motif	-	no_errors	BMX	HGNC	ENSG00000102010				104	0	0	97	13	11.8182
BMX	0	genome.wustl.edu	37	X	15560311	15560311	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	15560311	15560311	A	G	SNP	BMX	ENST00000342014	human	ensembl	74_37	+1	known	missense	c.1601	p.H534R	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_Pleckstrin_homology,pfam_Znf_Btk_motif,superfamily_Kinase-like_dom,smart_Pleckstrin_homology,smart_Znf_Btk_motif,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_Znf_Btk_motif,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,prints_Znf_Btk_motif	-	no_errors	BMX	HGNC	ENSG00000102010				209	0	0	155	11	6.62651
P2RY8	0	genome.wustl.edu	37	X	1584391	1584391	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	1584391	1584391	C	A	SNP	P2RY8	ENST00000381297	human	ensembl	74_37	-1	known	missense	c.1061	p.R354M	0.977	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Protea_act_rcpt	-	no_errors	P2RY8	HGNC	ENSG00000182162				95	0	0	91	7	7.14286
P2RY8	0	genome.wustl.edu	37	X	1585104	1585104	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	1585104	1585104	A	G	SNP	P2RY8	ENST00000381297	human	ensembl	74_37	-1	known	silent	c.348	p.C116	0.980	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Protea_act_rcpt	-	no_errors	P2RY8	HGNC	ENSG00000182162				26	0	0	26	4	13.3333
GRPR	0	genome.wustl.edu	37	X	16168543	16168543	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	16168543	16168543	G	A	SNP	GRPR	ENST00000380289	human	ensembl	74_37	+1	known	missense	c.529	p.V177M	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Bombsn_rcpt,prints_Gastrin_pep_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	GRPR	HGNC	ENSG00000126010				158	0	0	107	36	25.1748
TXLNG	0	genome.wustl.edu	37	X	16846369	16846369	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	16846369	16846369	T	C	SNP	TXLNG	ENST00000380122	human	ensembl	74_37	+1	known	silent	c.651	p.R217	0.973	pfam_Taxilin_fam	pfam_Taxilin_fam	-	no_errors	TXLNG	HGNC	ENSG00000086712				78	0	0	52	5	8.77193
TXLNG	0	genome.wustl.edu	37	X	16857989	16857989	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	16857989	16857989	C	T	SNP	TXLNG	ENST00000380122	human	ensembl	74_37	+1	known	missense	c.1198	p.R400C	1.000	pfam_Taxilin_fam	pfam_Taxilin_fam	-	no_errors	TXLNG	HGNC	ENSG00000086712				139	0	0	89	21	19.0909
AKAP17A	0	genome.wustl.edu	37	X	1712482	1712482	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	1712482	1712482	G	A	SNP	AKAP17A	ENST00000313871	human	ensembl	74_37	+1	known	missense	c.127	p.G43R	1.000	NULL	NULL	-	no_errors	AKAP17A	HGNC	ENSG00000197976				128	0	0	131	18	12.0805
REPS2	0	genome.wustl.edu	37	X	17156996	17156996	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	17156996	17156996	A	G	SNP	REPS2	ENST00000357277	human	ensembl	74_37	+1	known	missense	c.1826	p.K609R	1.000	NULL	smart_EPS15_homology,pfscan_EF_hand_dom,pfscan_EPS15_homology	-	no_errors	REPS2	HGNC	ENSG00000169891				41	0	0	40	9	18.3673
ASMT	0	genome.wustl.edu	37	X	1748790	1748790	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	1748790	1748790	G	A	SNP	ASMT	ENST00000381241	human	ensembl	74_37	+1	known	missense	c.520	p.A174T	1.000	pfam_O_MeTrfase_2,pirsf_COMT	pfam_O_MeTrfase_2,pirsf_COMT	-	no_errors	ASMT	HGNC	ENSG00000196433				185	1	0.537634	162	39	19.403
NHS	0	genome.wustl.edu	37	X	17742447	17742447	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	17742447	17742447	A	G	SNP	NHS	ENST00000380060	human	ensembl	74_37	+1	known	missense	c.1074	p.I358M	0.986	NULL	NULL	-	no_errors	NHS	HGNC	ENSG00000188158				144	0	0	102	6	5.55556
SCML1	0	genome.wustl.edu	37	X	17768146	17768146	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	17768146	17768146	C	T	SNP	SCML1	ENST00000380041	human	ensembl	74_37	+1	known	missense	c.436	p.R146C	0.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	SCML1	HGNC	ENSG00000047634				164	0	0	156	16	9.30233
BEND2	0	genome.wustl.edu	37	X	18213471	18213471	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	18213471	18213471	T	C	SNP	BEND2	ENST00000380033	human	ensembl	74_37	-1	known	silent	c.1125	p.G375	0.009	NULL	pfam_BEN_domain	-	no_errors	BEND2	HGNC	ENSG00000177324				120	0	0	100	9	8.25688
SCML2	0	genome.wustl.edu	37	X	18260691	18260691	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	18260691	18260691	T	C	SNP	SCML2	ENST00000251900	human	ensembl	74_37	-1	known	silent	c.1842	p.V614	1.000	NULL	pfam_Mbt,pfam_DUF3588,pfam_SAM_type1,superfamily_SAM/pointed,smart_Mbt,smart_SAM,pfscan_Mbt	-	no_errors	SCML2	HGNC	ENSG00000102098				107	0	0	79	19	19.3878
SCML2	0	genome.wustl.edu	37	X	18264789	18264789	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	18264789	18264789	A	G	SNP	SCML2	ENST00000251900	human	ensembl	74_37	-1	known	missense	c.1730	p.V577A	0.000	NULL	pfam_Mbt,pfam_DUF3588,pfam_SAM_type1,superfamily_SAM/pointed,smart_Mbt,smart_SAM,pfscan_Mbt	-	no_errors	SCML2	HGNC	ENSG00000102098				125	0	0	112	7	5.88235
CDKL5	0	genome.wustl.edu	37	X	18646626	18646626	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	18646626	18646626	C	T	SNP	CDKL5	ENST00000379989	human	ensembl	74_37	+1	known	missense	c.2632	p.P878S	0.999	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDKL5	HGNC	ENSG00000008086				203	0	0	199	19	8.7156
PPEF1	0	genome.wustl.edu	37	X	18836180	18836180	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	18836180	18836180	C	A	SNP	PPEF1	ENST00000361511	human	ensembl	74_37	+1	known	missense	c.1418	p.A473D	0.999	pirsf_Ser/Thr-Pase_EF-hand_contain	pfam_PEstase_dom,pfam_EF_hand_dom,pfam_PPP_dom,pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,smart_Ser/Thr-sp_prot-phosphatase,smart_EF_hand_dom,pirsf_Ser/Thr-Pase_EF-hand_contain,pfscan_EF_hand_dom,pfscan_IQ_motif_EF-hand-BS,prints_Ser/Thr-sp_prot-phosphatase	-	no_errors	PPEF1	HGNC	ENSG00000086717				121	0	0	92	6	6.12245
PHKA2	0	genome.wustl.edu	37	X	18912463	18912463	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	18912463	18912463	C	T	SNP	PHKA2	ENST00000379942	human	ensembl	74_37	-1	known	silent	c.3396	p.P1132	0.029	NULL	pfam_Glyco_hydro_15,superfamily_6-hairpin_glycosidase-like	-	no_errors	PHKA2	HGNC	ENSG00000044446				78	0	0	59	7	10.6061
PHKA2	0	genome.wustl.edu	37	X	18961916	18961916	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	18961916	18961916	T	C	SNP	PHKA2	ENST00000379942	human	ensembl	74_37	-1	known	missense	c.629	p.E210G	1.000	pfam_Glyco_hydro_15,superfamily_6-hairpin_glycosidase-like	pfam_Glyco_hydro_15,superfamily_6-hairpin_glycosidase-like	-	no_errors	PHKA2	HGNC	ENSG00000044446				136	0	0	139	9	6.08108
MAP3K15	0	genome.wustl.edu	37	X	19413307	19413307	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	19413307	19413307	C	T	SNP	MAP3K15	ENST00000338883	human	ensembl	74_37	-1	known	missense	c.2086	p.E696K	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_SAM/pointed,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP3K15	HGNC	ENSG00000180815				158	0	0	152	14	8.43373
PLCXD1	0	genome.wustl.edu	37	X	209792	209792	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	209792	209792	C	T	SNP	PLCXD1	ENST00000381657	human	ensembl	74_37	+1	known	silent	c.640	p.L214	0.992	superfamily_PLC-like_Pdiesterase_TIM-brl	pfam_PLipase_C_PInositol-sp_X_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_PInositol-sp_X_dom	-	no_errors	PLCXD1	HGNC	ENSG00000182378				67	0	0	58	11	15.942
DHRSX	0	genome.wustl.edu	37	X	2161159	2161159	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	2161159	2161159	C	T	SNP	DHRSX	ENST00000334651	human	ensembl	74_37	-1	known	missense	c.709	p.V237M	1.000	prints_Glc/ribitol_DH	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,pfam_Epimerase_deHydtase,prints_Glc/ribitol_DH	-	no_errors	DHRSX	HGNC	ENSG00000169084				57	0	0	62	16	20.5128
KLHL34	0	genome.wustl.edu	37	X	21675116	21675116	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	21675116	21675116	C	T	SNP	KLHL34	ENST00000379499	human	ensembl	74_37	-1	known	missense	c.791	p.R264H	0.851	pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL34	HGNC	ENSG00000185915				39	0	0	27	13	32.5
KLHL34	0	genome.wustl.edu	37	X	21675792	21675792	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	21675792	21675792	C	T	SNP	KLHL34	ENST00000379499	human	ensembl	74_37	-1	known	missense	c.115	p.E39K	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL34	HGNC	ENSG00000185915				34	0	0	35	13	27.0833
SMS	0	genome.wustl.edu	37	X	21985316	21985316	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	21985316	21985316	G	A	SNP	SMS	ENST00000404933	human	ensembl	74_37	+1	known	missense	c.52	p.D18N	1.000	NULL	pfam_Spermidine/spermine_synthase,pfscan_Spermidine/spermine_synthase	-	no_errors	SMS	HGNC	ENSG00000102172				69	0	0	50	8	13.7931
SMS	0	genome.wustl.edu	37	X	22012435	22012435	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	22012435	22012435	T	C	SNP	SMS	ENST00000404933	human	ensembl	74_37	+1	known	missense	c.1067	p.V356A	1.000	pfam_Spermidine/spermine_synthase,pfscan_Spermidine/spermine_synthase	pfam_Spermidine/spermine_synthase,pfscan_Spermidine/spermine_synthase	-	no_errors	SMS	HGNC	ENSG00000102172				97	0	0	85	8	8.60215
ZNF645	0	genome.wustl.edu	37	X	22291585	22291585	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	22291585	22291585	G	A	SNP	ZNF645	ENST00000323684	human	ensembl	74_37	+1	known	silent	c.477	p.P159	0.000	NULL	pfscan_Znf_RING,pfscan_Znf_C2H2	-	no_errors	ZNF645	HGNC	ENSG00000175809				149	0	0	101	36	26.2774
DDX53	0	genome.wustl.edu	37	X	23018527	23018527	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	23018527	23018527	G	A	SNP	DDX53	ENST00000327968	human	ensembl	74_37	+1	known	missense	c.353	p.S118N	0.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_KH_dom_type_1,superfamily_P-loop_NTPase,smart_KH_dom,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_KH_dom_type_1,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX53	HGNC	ENSG00000184735				151	0	0	105	10	8.69565
APOO	0	genome.wustl.edu	37	X	23876803	23876803	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	23876803	23876803	C	T	SNP	APOO	ENST00000379226	human	ensembl	74_37	-1	known	missense	c.436	p.A146T	0.887	pfam_Apolipoprotein_O	pfam_Apolipoprotein_O	-	no_errors	APOO	HGNC	ENSG00000184831				109	0	0	87	7	7.44681
CXorf58	0	genome.wustl.edu	37	X	23933870	23933870	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	23933870	23933870	G	T	SNP	CXorf58	ENST00000379211	human	ensembl	74_37	+1	known	missense	c.270	p.K90N	0.018	NULL	NULL	-	no_errors	CXorf58	HGNC	ENSG00000165182				86	0	0	61	4	6.15385
KLHL15	0	genome.wustl.edu	37	X	24006408	24006408	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	24006408	24006408	T	G	SNP	KLHL15	ENST00000328046	human	ensembl	74_37	-1	known	missense	c.1445	p.K482T	1.000	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL15	HGNC	ENSG00000174010				137	0	0	124	21	14.4828
ZBED1	0	genome.wustl.edu	37	X	2408217	2408217	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	2408217	2408217	C	T	SNP	ZBED1	ENST00000381218	human	ensembl	74_37	-1	known	missense	c.544	p.E182K	0.973	superfamily_RNaseH-like_dom	pfam_HATC_dom_C,pfam_Znf_BED_prd,superfamily_RNaseH-like_dom,smart_Znf_BED_prd,pfscan_Znf_BED_prd	-	no_errors	ZBED1	HGNC	ENSG00000214717				172	0	0	190	16	7.76699
ZBED1	0	genome.wustl.edu	37	X	2408366	2408366	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	2408366	2408366	C	T	SNP	ZBED1	ENST00000381218	human	ensembl	74_37	-1	known	missense	c.395	p.G132D	0.059	NULL	pfam_HATC_dom_C,pfam_Znf_BED_prd,superfamily_RNaseH-like_dom,smart_Znf_BED_prd,pfscan_Znf_BED_prd	-	no_errors	ZBED1	HGNC	ENSG00000214717				63	0	0	58	7	10.7692
POLA1	0	genome.wustl.edu	37	X	24759545	24759545	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	24759545	24759545	T	C	SNP	POLA1	ENST00000379068	human	ensembl	74_37	+1	known	missense	c.2270	p.F757S	1.000	superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,tigrfam_DNA-dir_DNA_pol_B_pol2	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,pfam_Znf_DNA-dir_DNA_pol_B_alpha,pfam_DNA_pol_a_cat_su_N,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B,tigrfam_DNA-dir_DNA_pol_B_pol2	-	no_errors	POLA1	HGNC	ENSG00000101868				125	0	0	75	5	6.25
DCAF8L2	0	genome.wustl.edu	37	X	27765794	27765794	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	27765794	27765794	G	T	SNP	DCAF8L2	ENST00000451261	human	ensembl	74_37	+1	known	missense	c.782	p.R261M	0.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF8L2	HGNC	ENSG00000189186				33	0	0	30	5	14.2857
MAGEB10	0	genome.wustl.edu	37	X	27840426	27840426	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	27840426	27840426	C	T	SNP	MAGEB10	ENST00000356790	human	ensembl	74_37	+1	known	missense	c.1003	p.R335C	0.000	NULL	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEB10	HGNC	ENSG00000177689				51	0	0	44	5	10.2041
ARSE	0	genome.wustl.edu	37	X	2856150	2856150	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	2856150	2856150	C	T	SNP	ARSE	ENST00000545496	human	ensembl	74_37	-1	known	silent	c.1350	p.E450	0.001	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	-	no_errors	ARSE	HGNC	ENSG00000157399				130	0	0	128	12	8.57143
ARSE	0	genome.wustl.edu	37	X	2861128	2861128	+	Silent	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	2861128	2861128	A	T	SNP	ARSE	ENST00000545496	human	ensembl	74_37	-1	known	silent	c.1179	p.G393	0.044	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	-	no_errors	ARSE	HGNC	ENSG00000157399				166	0	0	137	11	7.43243
PPP2R3B	0	genome.wustl.edu	37	X	302119	302119	+	Silent	SNP	C	C	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	302119	302119	C	G	SNP	PPP2R3B	ENST00000390665	human	ensembl	74_37	-1	known	silent	c.1098	p.V366	0.966	NULL	pfscan_EF_hand_dom	-	no_errors	PPP2R3B	HGNC	ENSG00000167393				251	0	0	232	16	6.45161
MAGEB3	0	genome.wustl.edu	37	X	30254423	30254423	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	30254423	30254423	A	T	SNP	MAGEB3	ENST00000361644	human	ensembl	74_37	+1	known	missense	c.382	p.M128L	0.000	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEB3	HGNC	ENSG00000198798				71	0	0	61	4	6.15385
NR0B1	0	genome.wustl.edu	37	X	30327194	30327194	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	30327194	30327194	G	A	SNP	NR0B1	ENST00000378970	human	ensembl	74_37	-1	known	missense	c.287	p.A96V	0.004	NULL	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Str_hrmn_rcpt	-	no_errors	NR0B1	HGNC	ENSG00000169297				53	0	0	45	10	18.1818
PPP2R3B	0	genome.wustl.edu	37	X	306303	306303	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	306303	306303	C	T	SNP	PPP2R3B	ENST00000390665	human	ensembl	74_37	-1	known	silent	c.984	p.T328	0.901	NULL	pfscan_EF_hand_dom	-	no_errors	PPP2R3B	HGNC	ENSG00000167393				97	0	0	88	27	23.4783
GK	0	genome.wustl.edu	37	X	30686200	30686200	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	30686200	30686200	T	C	SNP	GK	ENST00000378943	human	ensembl	74_37	+1	known	missense	c.224	p.L75P	1.000	pfam_Carb_kinase_FGGY_N,tigrfam_Glycerol_kin	pfam_Carb_kinase_FGGY_N,pfam_Carb_kinase_FGGY_C,tigrfam_Glycerol_kin	-	no_errors	GK	HGNC	ENSG00000198814				90	0	0	48	15	23.8095
TAB3	0	genome.wustl.edu	37	X	30849565	30849565	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	30849565	30849565	G	A	SNP	TAB3	ENST00000288422	human	ensembl	74_37	-1	known	silent	c.2118	p.C706	0.208	pfam_Znf_RanBP2,smart_Znf_RanBP2,pfscan_Znf_RanBP2	pfam_CUE,pfam_Znf_RanBP2,superfamily_UBA-like,smart_CUE,smart_Znf_RanBP2,pfscan_CUE,pfscan_Znf_RanBP2	-	no_errors	TAB3	HGNC	ENSG00000157625				50	0	0	41	4	8.88889
DMD	0	genome.wustl.edu	37	X	31165402	31165402	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	31165402	31165402	A	G	SNP	DMD	ENST00000357033	human	ensembl	74_37	-1	known	missense	c.10787	p.L3596P	1.000	pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_dom,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_dom,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947				139	0	0	91	26	22.2222
DMD	0	genome.wustl.edu	37	X	31196845	31196845	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	31196845	31196845	C	T	SNP	DMD	ENST00000357033	human	ensembl	74_37	-1	known	silent	c.10164	p.K3388	1.000	pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_dom,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_dom,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947				151	0	0	164	10	5.74713
MXRA5	0	genome.wustl.edu	37	X	3229042	3229042	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	3229042	3229042	C	T	SNP	MXRA5	ENST00000217939	human	ensembl	74_37	-1	known	missense	c.7202	p.G2401D	0.997	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	MXRA5	HGNC	ENSG00000101825				112	0	0	98	13	11.7117
MXRA5	0	genome.wustl.edu	37	X	3239357	3239357	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	3239357	3239357	T	C	SNP	MXRA5	ENST00000217939	human	ensembl	74_37	-1	known	missense	c.4369	p.T1457A	0.000	NULL	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	MXRA5	HGNC	ENSG00000101825				93	0	0	90	5	5.26316
DMD	0	genome.wustl.edu	37	X	32398784	32398784	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	32398784	32398784	T	A	SNP	DMD	ENST00000357033	human	ensembl	74_37	-1	known	missense	c.4688	p.K1563M	1.000	smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_dom,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_dom,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947				115	0	0	87	10	10.3093
MXRA5	0	genome.wustl.edu	37	X	3239946	3239946	+	Silent	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	3239946	3239946	A	T	SNP	MXRA5	ENST00000217939	human	ensembl	74_37	-1	known	silent	c.3780	p.S1260	0.000	NULL	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	MXRA5	HGNC	ENSG00000101825				223	0	0	154	45	22.6131
MXRA5	0	genome.wustl.edu	37	X	3240584	3240584	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	3240584	3240584	G	T	SNP	MXRA5	ENST00000217939	human	ensembl	74_37	-1	known	missense	c.3142	p.L1048I	0.000	NULL	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	MXRA5	HGNC	ENSG00000101825				162	0	0	147	19	11.4458
DMD	0	genome.wustl.edu	37	X	32536157	32536157	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	32536157	32536157	C	A	SNP	DMD	ENST00000357033	human	ensembl	74_37	-1	known	missense	c.2260	p.G754C	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_dom,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_dom,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947				91	0	0	57	6	9.52381
FAM47A	0	genome.wustl.edu	37	X	34148408	34148408	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	34148408	34148408	T	G	SNP	FAM47A	ENST00000346193	human	ensembl	74_37	-1	known	missense	c.1988	p.K663T	0.000	NULL	NULL	-	no_errors	FAM47A	HGNC	ENSG00000185448				151	0	0	114	13	10.2362
FAM47A	0	genome.wustl.edu	37	X	34148797	34148797	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	34148797	34148797	C	A	SNP	FAM47A	ENST00000346193	human	ensembl	74_37	-1	known	missense	c.1599	p.E533D	0.004	NULL	NULL	-	no_errors	FAM47A	HGNC	ENSG00000185448				105	1	0.943396	106	6	5.35714
FAM47B	0	genome.wustl.edu	37	X	34962797	34962797	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	34962797	34962797	A	G	SNP	FAM47B	ENST00000329357	human	ensembl	74_37	+1	known	missense	c.1849	p.T617A	0.023	NULL	NULL	-	no_errors	FAM47B	HGNC	ENSG00000189132				236	0	0	205	16	7.23982
CXorf22	0	genome.wustl.edu	37	X	35944204	35944204	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	35944204	35944204	A	T	SNP	CXorf22	ENST00000297866	human	ensembl	74_37	+1	known	missense	c.320	p.Y107F	0.999	NULL	superfamily_PapD-like	-	no_errors	CXorf22	HGNC	ENSG00000165164				75	0	0	54	7	11.4754
CXorf22	0	genome.wustl.edu	37	X	35959399	35959399	+	Splice_Site	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	35959399	35959399	G	T	SNP	CXorf22	ENST00000297866	human	ensembl	74_37	+1	known	splice_site	c.402-1	e3-1	0.998	-	-	-	no_errors	CXorf22	HGNC	ENSG00000165164				92	0	0	79	6	7.05882
CXorf22	0	genome.wustl.edu	37	X	35966531	35966531	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	35966531	35966531	C	A	SNP	CXorf22	ENST00000297866	human	ensembl	74_37	+1	known	missense	c.618	p.F206L	1.000	superfamily_PapD-like	superfamily_PapD-like	-	no_errors	CXorf22	HGNC	ENSG00000165164				109	0	0	89	14	13.5922
CXorf22	0	genome.wustl.edu	37	X	35969365	35969365	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	35969365	35969365	T	C	SNP	CXorf22	ENST00000297866	human	ensembl	74_37	+1	known	silent	c.774	p.G258	0.264	NULL	superfamily_PapD-like	-	no_errors	CXorf22	HGNC	ENSG00000165164				80	0	0	53	3	5.35714
LANCL3	0	genome.wustl.edu	37	X	37431373	37431373	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	37431373	37431373	C	T	SNP	LANCL3	ENST00000378619	human	ensembl	74_37	+1	known	missense	c.250	p.L84F	1.000	pfam_LANC-like	pfam_LANC-like,superfamily_6-hairpin_glycosidase-like,prints_LANC-like,prints_LanC-like_prot_euk	-	no_errors	LANCL3	HGNC	ENSG00000147036				15	0	0	16	3	15.7895
CYBB	0	genome.wustl.edu	37	X	37658288	37658288	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	37658288	37658288	G	A	SNP	CYBB	ENST00000378588	human	ensembl	74_37	+1	known	missense	c.755	p.G252E	1.000	NULL	pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_OxRdtase_FAD-bd_dom,superfamily_Riboflavin_synthase-like_b-brl,prints_Cyt_b245_heavy_chain	-	no_errors	CYBB	HGNC	ENSG00000165168				60	0	0	46	6	11.5385
CXorf27	0	genome.wustl.edu	37	X	37850184	37850184	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	37850184	37850184	T	C	SNP	CXorf27	ENST00000341016	human	ensembl	74_37	+1	known	missense	c.92	p.F31S	0.000	superfamily_Histone-fold	superfamily_Histone-fold	-	no_errors	CXorf27	HGNC	ENSG00000187516				44	0	0	41	6	12.766
OTC	0	genome.wustl.edu	37	X	38240679	38240679	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	38240679	38240679	C	T	SNP	OTC	ENST00000039007	human	ensembl	74_37	+1	known	missense	c.383	p.A128V	0.698	pfam_Asp/Orn_carbamoyltranf_P-bd,superfamily_Asp/Orn_carbamoylTrfase,prints_Orn/put_carbamltrans,tigrfam_Orn/put_carbamltrans	pfam_Asp_carbamoyltransf_Asp/Orn-bd,pfam_Asp/Orn_carbamoyltranf_P-bd,superfamily_Asp/Orn_carbamoylTrfase,prints_Orn/put_carbamltrans,prints_Asp/Orn_carbamoylTrfase,prints_Asp_carbamoyltransf,tigrfam_Orn/put_carbamltrans	-	no_errors	OTC	HGNC	ENSG00000036473				72	0	0	42	5	10.6383
BCOR	0	genome.wustl.edu	37	X	39931992	39931992	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	39931992	39931992	A	G	SNP	BCOR	ENST00000378444	human	ensembl	74_37	-1	known	silent	c.2607	p.Y869	0.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	BCOR	HGNC	ENSG00000183337				77	0	0	93	7	7
ATP6AP2	0	genome.wustl.edu	37	X	40448348	40448348	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	40448348	40448348	A	G	SNP	ATP6AP2	ENST00000378438	human	ensembl	74_37	+1	known	missense	c.148	p.M50V	1.000	NULL	pfam_Renin_rcpt	-	no_errors	ATP6AP2	HGNC	ENSG00000182220				87	0	0	55	11	16.6667
ATP6AP2	0	genome.wustl.edu	37	X	40456806	40456806	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	40456806	40456806	T	C	SNP	ATP6AP2	ENST00000378438	human	ensembl	74_37	+1	known	missense	c.424	p.S142P	0.997	NULL	pfam_Renin_rcpt	-	no_errors	ATP6AP2	HGNC	ENSG00000182220				129	0	0	105	10	8.69565
MED14	0	genome.wustl.edu	37	X	40571544	40571544	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	40571544	40571544	A	G	SNP	MED14	ENST00000324817	human	ensembl	74_37	-1	known	silent	c.783	p.D261	1.000	NULL	pfam_Mediator_Med14	-	no_errors	MED14	HGNC	ENSG00000180182				207	1	0.480769	160	9	5.32544
DDX3X	0	genome.wustl.edu	37	X	41205775	41205775	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	41205775	41205775	G	A	SNP	DDX3X	ENST00000399959	human	ensembl	74_37	+1	known	silent	c.1515	p.L505	1.000	pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_C,pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX3X	HGNC	ENSG00000215301				159	1	0.625	92	14	13.2075
GPR82	0	genome.wustl.edu	37	X	41586602	41586602	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	41586602	41586602	T	C	SNP	GPR82	ENST00000302548	human	ensembl	74_37	+1	known	missense	c.323	p.L108S	0.358	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR82	HGNC	ENSG00000171657				113	0	0	82	9	9.89011
MAOB	0	genome.wustl.edu	37	X	43662605	43662605	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	43662605	43662605	G	T	SNP	MAOB	ENST00000378069	human	ensembl	74_37	-1	known	missense	c.326	p.P109Q	1.000	pfam_Amino_oxidase,prints_Flavin_amine_oxidase	pfam_Amino_oxidase,pfam_FAD-dep_OxRdtase,pfam_FAD_bind_dom,pfam_Pyr_OxRdtase_NAD-bd_dom,pfam_mOase_FAD-bd,prints_Flavin_amine_oxidase	-	no_errors	MAOB	HGNC	ENSG00000069535				125	0	0	91	6	6.18557
MIR222	0	genome.wustl.edu	37	X	45606494	45606494	+	RNA	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	45606494	45606494	T	C	SNP	MIR222	ENST00000384992	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MIR222	HGNC	ENSG00000207725				45	0	0	30	5	14.2857
RBM10	0	genome.wustl.edu	37	X	47045526	47045526	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	47045526	47045526	A	G	SNP	RBM10	ENST00000377604	human	ensembl	74_37	+1	known	silent	c.2493	p.P831	0.111	NULL	pfam_G_patch_dom,pfam_RRM_dom,pfam_Znf_RanBP2,smart_RRM_dom,smart_Znf_RanBP2,smart_G_patch_dom,pfscan_Znf_RanBP2,pfscan_Znf_C2H2,pfscan_G_patch_dom,pfscan_RRM_dom	-	no_errors	RBM10	HGNC	ENSG00000182872				43	0	0	40	3	6.97674
ZNF157	0	genome.wustl.edu	37	X	47269706	47269706	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	47269706	47269706	A	T	SNP	ZNF157	ENST00000377073	human	ensembl	74_37	+1	known	missense	c.104	p.D35V	1.000	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF157	HGNC	ENSG00000147117				139	0	0	130	12	8.4507
ZNF157	0	genome.wustl.edu	37	X	47271938	47271938	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	47271938	47271938	C	T	SNP	ZNF157	ENST00000377073	human	ensembl	74_37	+1	known	missense	c.466	p.P156S	0.627	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF157	HGNC	ENSG00000147117				72	0	0	68	5	6.84932
ZNF157	0	genome.wustl.edu	37	X	47272743	47272743	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	47272743	47272743	G	A	SNP	ZNF157	ENST00000377073	human	ensembl	74_37	+1	known	missense	c.1271	p.S424N	0.071	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF157	HGNC	ENSG00000147117				39	0	0	21	5	19.2308
ZNF41	0	genome.wustl.edu	37	X	47307610	47307610	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	47307610	47307610	T	C	SNP	ZNF41	ENST00000397050	human	ensembl	74_37	-1	known	missense	c.1589	p.E530G	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF41	HGNC	ENSG00000147124				146	0	0	113	7	5.83333
ARAF	0	genome.wustl.edu	37	X	47426532	47426532	+	Splice_Site	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	47426532	47426532	T	C	SNP	ARAF	ENST00000377045	human	ensembl	74_37	+1	known	splice_site	c.873+2	e8+2	1.000	-	-	-	no_errors	ARAF	HGNC	ENSG00000078061				54	0	0	58	6	9.375
SYN1	0	genome.wustl.edu	37	X	47478771	47478771	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	47478771	47478771	G	A	SNP	SYN1	ENST00000295987	human	ensembl	74_37	-1	known	silent	c.357	p.I119	1.000	pfam_Synapsin_pre-ATP-grasp_dom,superfamily_PreATP-grasp_dom	pfam_Synapsin_ATP-bd_dom,pfam_Synapsin_pre-ATP-grasp_dom,pfam_Synapsin_P_site,pfam_ATP-grasp_RimK-type,superfamily_PreATP-grasp_dom,prints_Synapsin	-	no_errors	SYN1	HGNC	ENSG00000008056				28	0	0	26	7	21.2121
FTSJ1	0	genome.wustl.edu	37	X	48337071	48337071	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	48337071	48337071	A	G	SNP	FTSJ1	ENST00000348411	human	ensembl	74_37	+1	known	silent	c.258	p.V86	0.877	pfam_rRNA_MeTrfase_FtsJ_dom	pfam_rRNA_MeTrfase_FtsJ_dom	-	no_errors	FTSJ1	HGNC	ENSG00000068438				21	0	0	21	2	8.69565
FTSJ1	0	genome.wustl.edu	37	X	48339902	48339902	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	48339902	48339902	G	A	SNP	FTSJ1	ENST00000348411	human	ensembl	74_37	+1	known	missense	c.557	p.R186Q	1.000	pfam_rRNA_MeTrfase_FtsJ_dom	pfam_rRNA_MeTrfase_FtsJ_dom	-	no_errors	FTSJ1	HGNC	ENSG00000068438				59	0	0	54	7	11.4754
FTSJ1	0	genome.wustl.edu	37	X	48340054	48340054	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	48340054	48340054	C	T	SNP	FTSJ1	ENST00000348411	human	ensembl	74_37	+1	known	silent	c.606	p.P202	0.997	NULL	pfam_rRNA_MeTrfase_FtsJ_dom	-	no_errors	FTSJ1	HGNC	ENSG00000068438				26	0	0	15	5	25
PORCN	0	genome.wustl.edu	37	X	48371053	48371053	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	48371053	48371053	G	A	SNP	PORCN	ENST00000326194	human	ensembl	74_37	+1	known	missense	c.632	p.G211D	1.000	pfam_MBOAT_fam	pfam_MBOAT_fam	-	no_errors	PORCN	HGNC	ENSG00000102312				27	0	0	15	12	44.4444
EBP	0	genome.wustl.edu	37	X	48386694	48386694	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	48386694	48386694	A	G	SNP	EBP	ENST00000495186	human	ensembl	74_37	+1	known	missense	c.542	p.H181R	1.000	pfam_EBP	pfam_EBP	-	no_errors	EBP	HGNC	ENSG00000147155				34	0	0	27	3	10
TBC1D25	0	genome.wustl.edu	37	X	48418075	48418075	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	48418075	48418075	G	A	SNP	TBC1D25	ENST00000376771	human	ensembl	74_37	+1	known	missense	c.779	p.R260H	1.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D25	HGNC	ENSG00000068354				37	0	0	43	15	25.8621
WDR13	0	genome.wustl.edu	37	X	48457143	48457143	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	48457143	48457143	G	A	SNP	WDR13	ENST00000218056	human	ensembl	74_37	+1	known	missense	c.80	p.R27Q	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR13	HGNC	ENSG00000101940				28	0	0	42	5	10.6383
WDR13	0	genome.wustl.edu	37	X	48458825	48458825	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	48458825	48458825	G	A	SNP	WDR13	ENST00000218056	human	ensembl	74_37	+1	known	silent	c.642	p.R214	0.997	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR13	HGNC	ENSG00000101940				60	0	0	68	12	15
SUV39H1	0	genome.wustl.edu	37	X	48559089	48559089	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	48559089	48559089	T	A	SNP	SUV39H1	ENST00000337852	human	ensembl	74_37	+1	known	missense	c.806	p.V269D	1.000	pfam_SET_dom,smart_SET_dom,pirsf_Histone_H3-K9_MeTrfase,pfscan_SET_dom	pfam_SET_dom,pfam_Pre-SET_dom,pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,smart_Post-SET_dom,pirsf_Histone_H3-K9_MeTrfase,pfscan_SET_dom,pfscan_Pre-SET_dom,pfscan_Post-SET_dom,pfscan_Chromo_domain/shadow	-	no_errors	SUV39H1	HGNC	ENSG00000101945				45	0	0	38	4	9.52381
KCND1	0	genome.wustl.edu	37	X	48826003	48826003	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	48826003	48826003	G	A	SNP	KCND1	ENST00000218176	human	ensembl	74_37	-1	known	missense	c.676	p.R226C	0.951	prints_K_chnl_volt-dep_Kv4	pfam_K_chnl_volt-dep_Kv4_C,pfam_T1-type_BTB,pfam_Ion_trans_dom,pfam_Shal-type,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv4,prints_K_chnl_volt-dep_Kv4.1,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCND1	HGNC	ENSG00000102057				27	0	0	25	8	24.2424
GRIPAP1	0	genome.wustl.edu	37	X	48837853	48837853	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	48837853	48837853	A	G	SNP	GRIPAP1	ENST00000376441	human	ensembl	74_37	-1	known	missense	c.1805	p.I602T	1.000	NULL	superfamily_Prefoldin	-	no_errors	GRIPAP1	HGNC	ENSG00000068400				19	0	0	23	6	20.6897
GRIPAP1	0	genome.wustl.edu	37	X	48839424	48839424	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	48839424	48839424	C	A	SNP	GRIPAP1	ENST00000376441	human	ensembl	74_37	-1	known	missense	c.1566	p.K522N	1.000	superfamily_Prefoldin	superfamily_Prefoldin	-	no_errors	GRIPAP1	HGNC	ENSG00000068400				78	0	0	75	5	6.25
GPKOW	0	genome.wustl.edu	37	X	48970832	48970832	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	48970832	48970832	C	T	SNP	GPKOW	ENST00000156109	human	ensembl	74_37	-1	known	missense	c.1255	p.G419S	0.152	smart_KOW	pfam_KOW,pfam_G_patch_dom,superfamily_Translation_prot_SH3-like,smart_G_patch_dom,smart_KOW,pfscan_G_patch_dom	-	no_errors	GPKOW	HGNC	ENSG00000068394				64	0	0	76	4	5
GPKOW	0	genome.wustl.edu	37	X	48972254	48972254	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	48972254	48972254	G	A	SNP	GPKOW	ENST00000156109	human	ensembl	74_37	-1	known	silent	c.1131	p.Y377	0.997	NULL	pfam_KOW,pfam_G_patch_dom,superfamily_Translation_prot_SH3-like,smart_G_patch_dom,smart_KOW,pfscan_G_patch_dom	-	no_errors	GPKOW	HGNC	ENSG00000068394				41	0	0	33	12	26.6667
MAGIX	0	genome.wustl.edu	37	X	49021153	49021153	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	49021153	49021153	G	A	SNP	MAGIX	ENST00000376338	human	ensembl	74_37	+1	known	missense	c.55	p.A19T	0.000	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	MAGIX	HGNC	ENSG00000017621				160	0	0	141	26	15.5689
PPP1R3F	0	genome.wustl.edu	37	X	49127054	49127054	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	49127054	49127054	A	G	SNP	PPP1R3F	ENST00000055335	human	ensembl	74_37	+1	known	missense	c.722	p.D241G	0.961	pfam_CBM_21,pfscan_CBM_21	pfam_CBM_21,pfscan_CBM_21	-	no_errors	PPP1R3F	HGNC	ENSG00000049769				26	0	0	26	3	10.3448
GAGE10	0	genome.wustl.edu	37	X	49161405	49161405	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	49161405	49161405	A	T	SNP	GAGE10	ENST00000407599	human	ensembl	74_37	+1	known	missense	c.67	p.I23F	0.000	pfam_GAGE	pfam_GAGE	-	no_errors	GAGE10	HGNC	ENSG00000215274				397	0	0	311	23	6.88623
GAGE12J	0	genome.wustl.edu	37	X	49179707	49179707	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	49179707	49179707	C	T	SNP	GAGE12J	ENST00000442437	human	ensembl	74_37	+1	known	missense	c.35	p.P12L	0.001	pfam_GAGE	pfam_GAGE	-	no_errors	GAGE12J	HGNC	ENSG00000224659				456	0	0	355	25	6.57895
CLCN5	0	genome.wustl.edu	37	X	49855016	49855016	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	49855016	49855016	C	A	SNP	CLCN5	ENST00000376088	human	ensembl	74_37	+1	known	missense	c.1988	p.P663H	1.000	NULL	pfam_Cl-channel_volt-gated,pfam_CBS_dom,superfamily_Cl-channel_core,smart_CBS_dom,prints_Cl-channel_volt-gated,prints_Cl_channel-5	-	no_errors	CLCN5	HGNC	ENSG00000171365				89	0	0	73	5	6.41026
AKAP4	0	genome.wustl.edu	37	X	49958148	49958148	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	49958148	49958148	C	T	SNP	AKAP4	ENST00000358526	human	ensembl	74_37	-1	known	missense	c.1216	p.A406T	0.993	pfam_AKAP_110_C,smart_AKAP_110	pfam_AKAP_110_C,pfam_RII_binding_1,smart_AKAP_110	-	no_errors	AKAP4	HGNC	ENSG00000147081				120	0	0	111	8	6.72269
AKAP4	0	genome.wustl.edu	37	X	49958224	49958224	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	49958224	49958224	G	A	SNP	AKAP4	ENST00000358526	human	ensembl	74_37	-1	known	silent	c.1140	p.S380	0.966	pfam_AKAP_110_C,smart_AKAP_110	pfam_AKAP_110_C,pfam_RII_binding_1,smart_AKAP_110	-	no_errors	AKAP4	HGNC	ENSG00000147081				72	0	0	53	13	19.697
DGKK	0	genome.wustl.edu	37	X	50213510	50213510	+	RNA	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	50213510	50213510	C	T	SNP	DGKK	ENST00000376025	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.116	-	-	-	no_errors	DGKK	HGNC	ENSG00000204466				104	0	0	92	15	14.0187
NUDT10	0	genome.wustl.edu	37	X	51075982	51075982	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	51075982	51075982	G	A	SNP	NUDT10	ENST00000356450	human	ensembl	74_37	+1	known	silent	c.165	p.E55	1.000	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like	-	no_errors	NUDT10	HGNC	ENSG00000122824				24	0	0	38	4	9.52381
CXorf67	0	genome.wustl.edu	37	X	51150240	51150240	+	Silent	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	51150240	51150240	G	T	SNP	CXorf67	ENST00000342995	human	ensembl	74_37	+1	known	silent	c.372	p.G124	0.000	NULL	NULL	-	no_errors	CXorf67	HGNC	ENSG00000187690				10	0	0	6	3	33.3333
CXorf67	0	genome.wustl.edu	37	X	51150515	51150515	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	51150515	51150515	G	A	SNP	CXorf67	ENST00000342995	human	ensembl	74_37	+1	known	missense	c.647	p.R216H	0.000	NULL	NULL	-	no_errors	CXorf67	HGNC	ENSG00000187690				16	0	0	15	9	37.5
CXorf67	0	genome.wustl.edu	37	X	51150736	51150736	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	51150736	51150736	C	T	SNP	CXorf67	ENST00000342995	human	ensembl	74_37	+1	known	missense	c.868	p.R290C	0.000	NULL	NULL	-	no_errors	CXorf67	HGNC	ENSG00000187690				28	0	0	17	7	29.1667
MAGED1	0	genome.wustl.edu	37	X	51639598	51639598	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	51639598	51639598	A	G	SNP	MAGED1	ENST00000375695	human	ensembl	74_37	+1	known	missense	c.1015	p.T339A	0.821	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGED1	HGNC	ENSG00000179222				53	0	0	36	9	20
KDM5C	0	genome.wustl.edu	37	X	53230899	53230899	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	53230899	53230899	G	A	SNP	KDM5C	ENST00000375401	human	ensembl	74_37	-1	known	missense	c.1894	p.H632Y	1.000	smart_JmjC_dom,pfscan_JmjC_dom	pfam_Lys_sp_deMease_like_dom,pfam_JmjC_dom,pfam_ARID/BRIGHT_DNA-bd,pfam_Znf_C5HC2,pfam_Znf_PHD-finger,pfam_TF_JmjN,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_Znf_PHD,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	KDM5C	HGNC	ENSG00000126012				46	0	0	37	3	7.5
KDM5C	0	genome.wustl.edu	37	X	53244983	53244983	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	53244983	53244983	G	A	SNP	KDM5C	ENST00000375401	human	ensembl	74_37	-1	known	silent	c.957	p.A319	1.000	superfamily_Znf_FYVE_PHD	pfam_Lys_sp_deMease_like_dom,pfam_JmjC_dom,pfam_ARID/BRIGHT_DNA-bd,pfam_Znf_C5HC2,pfam_Znf_PHD-finger,pfam_TF_JmjN,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_Znf_PHD,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	KDM5C	HGNC	ENSG00000126012				92	0	0	75	10	11.7647
KDM5C	0	genome.wustl.edu	37	X	53247567	53247567	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	53247567	53247567	A	G	SNP	KDM5C	ENST00000375401	human	ensembl	74_37	-1	known	missense	c.242	p.V81A	1.000	pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	pfam_Lys_sp_deMease_like_dom,pfam_JmjC_dom,pfam_ARID/BRIGHT_DNA-bd,pfam_Znf_C5HC2,pfam_Znf_PHD-finger,pfam_TF_JmjN,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_Znf_PHD,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	KDM5C	HGNC	ENSG00000126012				74	0	0	60	5	7.69231
IQSEC2	0	genome.wustl.edu	37	X	53268436	53268436	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	53268436	53268436	T	C	SNP	IQSEC2	ENST00000396435	human	ensembl	74_37	-1	known	missense	c.3056	p.Y1019C	1.000	smart_Pleckstrin_homology	pfam_Sec7_dom,superfamily_Sec7_dom,superfamily_P-loop_NTPase,smart_Sec7_dom,smart_Pleckstrin_homology,pfscan_IQ_motif_EF-hand-BS,pfscan_Sec7_dom	-	no_errors	IQSEC2	HGNC	ENSG00000124313				77	0	0	66	5	7.04225
IQSEC2	0	genome.wustl.edu	37	X	53279871	53279871	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	53279871	53279871	A	G	SNP	IQSEC2	ENST00000396435	human	ensembl	74_37	-1	known	silent	c.1887	p.H629	1.000	NULL	pfam_Sec7_dom,superfamily_Sec7_dom,superfamily_P-loop_NTPase,smart_Sec7_dom,smart_Pleckstrin_homology,pfscan_IQ_motif_EF-hand-BS,pfscan_Sec7_dom	-	no_errors	IQSEC2	HGNC	ENSG00000124313				25	0	0	33	8	19.5122
IQSEC2	0	genome.wustl.edu	37	X	53280312	53280312	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	53280312	53280312	G	A	SNP	IQSEC2	ENST00000396435	human	ensembl	74_37	-1	known	silent	c.1446	p.H482	1.000	NULL	pfam_Sec7_dom,superfamily_Sec7_dom,superfamily_P-loop_NTPase,smart_Sec7_dom,smart_Pleckstrin_homology,pfscan_IQ_motif_EF-hand-BS,pfscan_Sec7_dom	-	no_errors	IQSEC2	HGNC	ENSG00000124313				88	0	0	73	5	6.41026
SMC1A	0	genome.wustl.edu	37	X	53440054	53440054	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	53440054	53440054	A	T	SNP	SMC1A	ENST00000322213	human	ensembl	74_37	-1	known	missense	c.650	p.V217E	0.999	pfam_RecF/RecN/SMC_N,superfamily_P-loop_NTPase	pfam_RecF/RecN/SMC_N,pfam_SMC_hinge,superfamily_P-loop_NTPase,superfamily_SMC_hinge,smart_SMC_hinge,prints_Tropomyosin	-	no_errors	SMC1A	HGNC	ENSG00000072501				60	0	0	65	8	10.9589
HUWE1	0	genome.wustl.edu	37	X	53607904	53607904	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	53607904	53607904	T	C	SNP	HUWE1	ENST00000262854	human	ensembl	74_37	-1	known	missense	c.5603	p.N1868S	1.000	NULL	pfam_E3_Ub_ligase_DUF913,pfam_HECT,pfam_E3_Ub_ligase_DUF908,pfam_WWE-dom,pfam_UBA/Ts_N,superfamily_HECT,superfamily_UBA-like,superfamily_ARM-type_fold,smart_UBA/transl_elong_EF1B_N_euk,smart_HECT,pfscan_HECT,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_WWE-dom	-	no_errors	HUWE1	HGNC	ENSG00000086758				46	0	0	31	5	13.8889
PHF8	0	genome.wustl.edu	37	X	54014280	54014280	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	54014280	54014280	C	T	SNP	PHF8	ENST00000357988	human	ensembl	74_37	-1	known	missense	c.1936	p.E646K	0.392	NULL	pfam_JmjC_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_JmjC_dom,pfscan_JmjC_dom,pfscan_Znf_PHD-finger	-	no_errors	PHF8	HGNC	ENSG00000172943				61	0	0	53	4	7.01754
PHF8	0	genome.wustl.edu	37	X	54019239	54019239	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	54019239	54019239	C	T	SNP	PHF8	ENST00000357988	human	ensembl	74_37	-1	known	missense	c.1768	p.D590N	1.000	NULL	pfam_JmjC_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_JmjC_dom,pfscan_JmjC_dom,pfscan_Znf_PHD-finger	-	no_errors	PHF8	HGNC	ENSG00000172943				43	0	0	35	4	10.2564
WNK3	0	genome.wustl.edu	37	X	54263865	54263865	+	Silent	SNP	A	A	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	54263865	54263865	A	C	SNP	WNK3	ENST00000354646	human	ensembl	74_37	-1	known	silent	c.4134	p.S1378	0.983	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	WNK3	HGNC	ENSG00000196632				138	0	0	93	7	7
FGD1	0	genome.wustl.edu	37	X	54491892	54491892	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	54491892	54491892	T	C	SNP	FGD1	ENST00000375135	human	ensembl	74_37	-1	known	missense	c.1628	p.D543G	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Znf_FYVE,superfamily_DH-domain,superfamily_Znf_FYVE_PHD,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD1	HGNC	ENSG00000102302				85	0	0	58	4	6.45161
ITIH6	0	genome.wustl.edu	37	X	54784875	54784875	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	54784875	54784875	C	A	SNP	ITIH6	ENST00000218436	human	ensembl	74_37	-1	known	missense	c.1632	p.K544N	0.001	NULL	pfam_VIT,pfam_ITI_HC_C,pfam_VWF_A,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	ITIH6	HGNC	ENSG00000102313				24	0	0	20	3	13.0435
TRO	0	genome.wustl.edu	37	X	54955368	54955368	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	54955368	54955368	T	C	SNP	TRO	ENST00000173898	human	ensembl	74_37	+1	known	silent	c.2211	p.A737	0.785	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	TRO	HGNC	ENSG00000067445				32	0	0	33	5	13.1579
TRO	0	genome.wustl.edu	37	X	54955548	54955548	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	54955548	54955548	T	C	SNP	TRO	ENST00000173898	human	ensembl	74_37	+1	known	silent	c.2391	p.C797	0.001	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	TRO	HGNC	ENSG00000067445				98	0	0	91	7	7.14286
KLF8	0	genome.wustl.edu	37	X	56276693	56276693	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	56276693	56276693	G	A	SNP	KLF8	ENST00000468660	human	ensembl	74_37	+1	known	missense	c.37	p.V13I	0.281	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	KLF8	HGNC	ENSG00000102349				204	0	0	141	9	6
FAAH2	0	genome.wustl.edu	37	X	57367813	57367813	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	57367813	57367813	G	A	SNP	FAAH2	ENST00000374900	human	ensembl	74_37	+1	known	silent	c.732	p.K244	0.999	pfam_Amidase,superfamily_Amidase_dom	pfam_Amidase,superfamily_Amidase_dom	-	no_errors	FAAH2	HGNC	ENSG00000165591				450	0	0	313	32	9.27536
ZXDA	0	genome.wustl.edu	37	X	57935777	57935777	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	57935777	57935777	A	T	SNP	ZXDA	ENST00000358697	human	ensembl	74_37	-1	known	missense	c.1078	p.F360I	0.966	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZXDA	HGNC	ENSG00000198205				75	0	0	67	18	21.1765
NLGN4X	0	genome.wustl.edu	37	X	5827247	5827247	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	5827247	5827247	C	T	SNP	NLGN4X	ENST00000381093	human	ensembl	74_37	-1	known	missense	c.719	p.G240D	1.000	pfam_CarbesteraseB,pfam_AB_hydrolase_3	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Neuroligin	-	no_errors	NLGN4X	HGNC	ENSG00000146938				93	0	0	82	8	8.88889
ARHGEF9	0	genome.wustl.edu	37	X	62893983	62893983	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	62893983	62893983	G	A	SNP	ARHGEF9	ENST00000253401	human	ensembl	74_37	-1	known	missense	c.859	p.R287C	1.000	superfamily_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_SH3_2,pfam_SH3_domain,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_SH3_domain,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ARHGEF9	HGNC	ENSG00000131089				104	0	0	73	18	19.7802
ARHGEF9	0	genome.wustl.edu	37	X	62944564	62944564	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	62944564	62944564	C	G	SNP	ARHGEF9	ENST00000253401	human	ensembl	74_37	-1	known	missense	c.37	p.A13P	1.000	superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_DH-domain,pfam_SH3_2,pfam_SH3_domain,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_SH3_domain,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ARHGEF9	HGNC	ENSG00000131089				99	0	0	78	5	6.0241
MTMR8	0	genome.wustl.edu	37	X	63445207	63445207	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	63445207	63445207	C	T	SNP	MTMR8	ENST00000453546	human	ensembl	74_37	-1	known	silent	c.1449	p.T483	0.971	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Myotubularin-like_Pase_dom,pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	MTMR8	HGNC	ENSG00000102043				19	0	0	19	8	29.6296
MTMR8	0	genome.wustl.edu	37	X	63445479	63445479	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	63445479	63445479	T	C	SNP	MTMR8	ENST00000453546	human	ensembl	74_37	-1	known	missense	c.1177	p.I393V	1.000	NULL	pfam_Myotubularin-like_Pase_dom,pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	MTMR8	HGNC	ENSG00000102043				25	0	0	17	5	22.7273
ZC3H12B	0	genome.wustl.edu	37	X	64722378	64722378	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	64722378	64722378	C	T	SNP	ZC3H12B	ENST00000338957	human	ensembl	74_37	+1	known	silent	c.1800	p.N600	0.717	NULL	pfam_RNase_Zc3h12	-	no_errors	ZC3H12B	HGNC	ENSG00000102053				40	0	0	32	4	11.1111
MSN	0	genome.wustl.edu	37	X	64951829	64951829	+	Silent	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	64951829	64951829	C	A	SNP	MSN	ENST00000360270	human	ensembl	74_37	+1	known	silent	c.681	p.I227	1.000	pirsf_ERM,pfam_FERM_PH-like_C,prints_Ez/rad/moesin_like,pfscan_FERM_domain	pirsf_ERM,pfam_ERM_C_dom,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM_N,superfamily_FERM_central,superfamily_Moesin_tail,smart_Band_41_domain,prints_Ez/rad/moesin_like,prints_Band_41_fam,pfscan_FERM_domain	-	no_errors	MSN	HGNC	ENSG00000147065				98	0	0	90	10	10
MSN	0	genome.wustl.edu	37	X	64957057	64957057	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	64957057	64957057	C	T	SNP	MSN	ENST00000360270	human	ensembl	74_37	+1	known	missense	c.1108	p.R370C	1.000	pirsf_ERM,pfam_ERM_C_dom	pirsf_ERM,pfam_ERM_C_dom,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM_N,superfamily_FERM_central,superfamily_Moesin_tail,smart_Band_41_domain,prints_Ez/rad/moesin_like,prints_Band_41_fam,pfscan_FERM_domain	-	no_errors	MSN	HGNC	ENSG00000147065				15	0	0	13	5	27.7778
OPHN1	0	genome.wustl.edu	37	X	67502906	67502906	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	67502906	67502906	T	A	SNP	OPHN1	ENST00000355520	human	ensembl	74_37	-1	known	missense	c.304	p.M102L	1.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom	-	no_errors	OPHN1	HGNC	ENSG00000079482				57	0	0	40	3	6.97674
YIPF6	0	genome.wustl.edu	37	X	67751834	67751834	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	67751834	67751834	C	A	SNP	YIPF6	ENST00000462683	human	ensembl	74_37	+1	known	missense	c.704	p.P235H	0.999	NULL	pfam_Yip1	-	no_errors	YIPF6	HGNC	ENSG00000181704				54	0	0	39	5	11.3636
STARD8	0	genome.wustl.edu	37	X	67941915	67941915	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	67941915	67941915	G	A	SNP	STARD8	ENST00000374599	human	ensembl	74_37	+1	known	missense	c.2486	p.G829D	0.997	superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_START_lipid-bd_dom,pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,smart_START_lipid-bd_dom,pfscan_START_lipid-bd_dom,pfscan_RhoGAP_dom	-	no_errors	STARD8	HGNC	ENSG00000130052				44	0	0	28	6	17.6471
EFNB1	0	genome.wustl.edu	37	X	68060180	68060180	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	68060180	68060180	G	A	SNP	EFNB1	ENST00000204961	human	ensembl	74_37	+1	known	missense	c.724	p.A242T	0.809	NULL	pfam_Ephrin,superfamily_Cupredoxin,prints_Ephrin	-	no_errors	EFNB1	HGNC	ENSG00000090776				42	0	0	45	5	10
EFNB1	0	genome.wustl.edu	37	X	68060449	68060449	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	68060449	68060449	C	T	SNP	EFNB1	ENST00000204961	human	ensembl	74_37	+1	known	silent	c.993	p.V331	1.000	NULL	pfam_Ephrin,superfamily_Cupredoxin,prints_Ephrin	-	no_errors	EFNB1	HGNC	ENSG00000090776				34	0	0	22	3	12
PJA1	0	genome.wustl.edu	37	X	68381999	68381999	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	68381999	68381999	G	T	SNP	PJA1	ENST00000361478	human	ensembl	74_37	-1	known	nonsense	c.1083	p.C361*	0.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	PJA1	HGNC	ENSG00000181191				82	0	0	78	7	8.23529
EDA	0	genome.wustl.edu	37	X	68836169	68836169	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	68836169	68836169	T	C	SNP	EDA	ENST00000374552	human	ensembl	74_37	+1	known	missense	c.17	p.V6A	0.070	NULL	pfam_TNF_dom,pfam_Collagen,superfamily_Tumour_necrosis_fac-like_dom,pfscan_TNF_dom	-	no_errors	EDA	HGNC	ENSG00000158813				22	0	0	16	3	15.7895
EDA	0	genome.wustl.edu	37	X	68836237	68836237	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	68836237	68836237	G	A	SNP	EDA	ENST00000374552	human	ensembl	74_37	+1	known	missense	c.85	p.G29R	0.999	NULL	pfam_TNF_dom,pfam_Collagen,superfamily_Tumour_necrosis_fac-like_dom,pfscan_TNF_dom	-	no_errors	EDA	HGNC	ENSG00000158813				37	0	0	40	10	20
KIF4A	0	genome.wustl.edu	37	X	69639532	69639532	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	69639532	69639532	C	T	SNP	KIF4A	ENST00000374403	human	ensembl	74_37	+1	known	missense	c.3394	p.R1132W	0.000	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF4A	HGNC	ENSG00000090889				114	1	0.869565	97	14	12.6126
KIF4A	0	genome.wustl.edu	37	X	69639929	69639929	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	69639929	69639929	C	T	SNP	KIF4A	ENST00000374403	human	ensembl	74_37	+1	known	silent	c.3513	p.C1171	0.996	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF4A	HGNC	ENSG00000090889				76	0	0	48	14	22.5806
GDPD2	0	genome.wustl.edu	37	X	69647035	69647035	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	69647035	69647035	G	A	SNP	GDPD2	ENST00000453994	human	ensembl	74_37	+1	known	missense	c.751	p.G251R	1.000	pfam_GlyceroP-diester-Pdiesterase,superfamily_PLC-like_Pdiesterase_TIM-brl	pfam_GlyceroP-diester-Pdiesterase,superfamily_PLC-like_Pdiesterase_TIM-brl	-	no_errors	GDPD2	HGNC	ENSG00000130055				84	0	0	81	11	11.9565
GDPD2	0	genome.wustl.edu	37	X	69649741	69649741	+	RNA	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	69649741	69649741	A	G	SNP	GDPD2	ENST00000472623	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GDPD2	HGNC	ENSG00000130055				55	0	0	43	8	15.6863
GDPD2	0	genome.wustl.edu	37	X	69649837	69649837	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	69649837	69649837	C	T	SNP	GDPD2	ENST00000453994	human	ensembl	74_37	+1	known	missense	c.1231	p.R411C	0.317	superfamily_PLC-like_Pdiesterase_TIM-brl	pfam_GlyceroP-diester-Pdiesterase,superfamily_PLC-like_Pdiesterase_TIM-brl	-	no_errors	GDPD2	HGNC	ENSG00000130055				71	0	0	74	7	8.64198
GDPD2	0	genome.wustl.edu	37	X	69652204	69652204	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	69652204	69652204	A	G	SNP	GDPD2	ENST00000453994	human	ensembl	74_37	+1	known	missense	c.1508	p.K503R	1.000	superfamily_PLC-like_Pdiesterase_TIM-brl	pfam_GlyceroP-diester-Pdiesterase,superfamily_PLC-like_Pdiesterase_TIM-brl	-	no_errors	GDPD2	HGNC	ENSG00000130055				190	0	0	171	14	7.56757
SLC7A3	0	genome.wustl.edu	37	X	70148105	70148105	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	70148105	70148105	A	G	SNP	SLC7A3	ENST00000298085	human	ensembl	74_37	-1	known	missense	c.710	p.L237S	0.998	pfam_AA-permease/SLC12A_dom,pirsf_AA/rel_permease1,tigrfam_Cat_AA_permease	pfam_AA-permease/SLC12A_dom,pirsf_AA/rel_permease1,tigrfam_Cat_AA_permease	-	no_errors	SLC7A3	HGNC	ENSG00000165349				39	0	0	34	7	17.0732
CXorf65	0	genome.wustl.edu	37	X	70326212	70326212	+	Silent	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	70326212	70326212	A	G	SNP	CXorf65	ENST00000374251	human	ensembl	74_37	-1	known	silent	c.90	p.S30	0.000	NULL	NULL	-	no_errors	CXorf65	HGNC	ENSG00000204165				84	0	0	60	14	18.9189
IL2RG	0	genome.wustl.edu	37	X	70327621	70327621	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	70327621	70327621	C	G	SNP	IL2RG	ENST00000374202	human	ensembl	74_37	-1	known	missense	c.1075	p.A359P	0.166	NULL	pfam_IL-6_rcpt_alpha-bd,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL2RG	HGNC	ENSG00000147168				27	0	0	32	7	17.9487
NLGN3	0	genome.wustl.edu	37	X	70389593	70389593	+	Nonsense_Mutation	SNP	C	C	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	70389593	70389593	C	G	SNP	NLGN3	ENST00000358741	human	ensembl	74_37	+1	known	nonsense	c.2193	p.Y731*	1.000	prints_Neuroligin	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Neuroligin	-	no_errors	NLGN3	HGNC	ENSG00000196338				31	0	0	31	11	26.1905
ACRC	0	genome.wustl.edu	37	X	70823666	70823666	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	70823666	70823666	A	G	SNP	ACRC	ENST00000373695	human	ensembl	74_37	+1	known	missense	c.539	p.D180G	0.111	NULL	pfam_SprT-like_domain,smart_SprT-like_domain	-	no_errors	ACRC	HGNC	ENSG00000147174				334	0	0	238	26	9.84848
ACRC	0	genome.wustl.edu	37	X	70832302	70832302	+	Nonsense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	70832302	70832302	T	A	SNP	ACRC	ENST00000373695	human	ensembl	74_37	+1	known	nonsense	c.1848	p.Y616*	1.000	pfam_SprT-like_domain,smart_SprT-like_domain	pfam_SprT-like_domain,smart_SprT-like_domain	-	no_errors	ACRC	HGNC	ENSG00000147174				38	0	0	22	3	12
CXCR3	0	genome.wustl.edu	37	X	70836470	70836470	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	70836470	70836470	G	A	SNP	CXCR3	ENST00000373691	human	ensembl	74_37	-1	known	silent	c.993	p.G331	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Chemokine_CXCR3,prints_GPCR_Rhodpsn,prints_Chemokine_CXCR4,prints_Chemokine_rcpt,prints_ATII_rcpt	-	no_errors	CXCR3	HGNC	ENSG00000186810				53	0	0	31	4	11.4286
RGAG4	0	genome.wustl.edu	37	X	71349878	71349878	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	71349878	71349878	T	C	SNP	RGAG4	ENST00000479991	human	ensembl	74_37	-1	known	missense	c.1513	p.R505G	0.380	NULL	pfam_Retrotrans_gag_dom	-	no_errors	RGAG4	HGNC	ENSG00000242732				41	0	0	44	4	8.33333
RGAG4	0	genome.wustl.edu	37	X	71350381	71350381	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	71350381	71350381	T	C	SNP	RGAG4	ENST00000479991	human	ensembl	74_37	-1	known	missense	c.1010	p.E337G	0.008	NULL	pfam_Retrotrans_gag_dom	-	no_errors	RGAG4	HGNC	ENSG00000242732				96	0	0	79	10	11.236
PIN4	0	genome.wustl.edu	37	X	71416695	71416695	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	71416695	71416695	T	A	SNP	PIN4	ENST00000373669	human	ensembl	74_37	+1	known	missense	c.253	p.S85T	1.000	pfam_PPIase_PpiC,pfscan_PPIase_PpiC	pfam_PPIase_PpiC,pfscan_PPIase_PpiC	-	no_errors	PIN4	HGNC	ENSG00000102309				156	0	0	97	10	9.34579
ERCC6L	0	genome.wustl.edu	37	X	71425828	71425828	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	71425828	71425828	T	A	SNP	ERCC6L	ENST00000334463	human	ensembl	74_37	-1	known	missense	c.2789	p.D930V	0.459	NULL	pfam_SNF2_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_TPR-contain_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ERCC6L	HGNC	ENSG00000186871				104	0	0	89	6	6.31579
HDAC8	0	genome.wustl.edu	37	X	71787753	71787753	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	71787753	71787753	C	T	SNP	HDAC8	ENST00000373573	human	ensembl	74_37	-1	known	nonsense	c.423	p.W141*	1.000	pfam_His_deacetylse_dom,pirsf_His_deacetylse_1,prints_His_deacetylse	pfam_His_deacetylse_dom,pirsf_His_deacetylse_1,prints_His_deacetylse_1,prints_His_deacetylse	-	no_errors	HDAC8	HGNC	ENSG00000147099				173	0	0	138	12	8
NAP1L2	0	genome.wustl.edu	37	X	72433875	72433875	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	72433875	72433875	G	A	SNP	NAP1L2	ENST00000373517	human	ensembl	74_37	-1	known	missense	c.454	p.R152C	1.000	pfam_NAP_family	pfam_NAP_family	-	no_errors	NAP1L2	HGNC	ENSG00000186462				216	0	0	144	40	21.7391
XIST	0	genome.wustl.edu	37	X	73040844	73040844	+	RNA	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	73040844	73040844	T	C	SNP	XIST	ENST00000416330	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	XIST	HGNC	ENSG00000229807				110	0	0	78	13	14.2857
XIST	0	genome.wustl.edu	37	X	73042647	73042647	+	RNA	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	73042647	73042647	A	G	SNP	XIST	ENST00000429829	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	XIST	HGNC	ENSG00000229807				111	1	0.892857	76	7	8.43373
XIST	0	genome.wustl.edu	37	X	73044507	73044507	+	RNA	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	73044507	73044507	T	C	SNP	XIST	ENST00000429829	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	XIST	HGNC	ENSG00000229807				88	0	0	64	12	15.7895
XIST	0	genome.wustl.edu	37	X	73044614	73044614	+	RNA	SNP	T	T	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	73044614	73044614	T	A	SNP	XIST	ENST00000429829	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	XIST	HGNC	ENSG00000229807				111	0	0	87	11	11.2245
XIST	0	genome.wustl.edu	37	X	73063303	73063303	+	RNA	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	73063303	73063303	A	G	SNP	XIST	ENST00000429829	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	XIST	HGNC	ENSG00000229807				58	0	0	38	3	7.31707
XIST	0	genome.wustl.edu	37	X	73065194	73065194	+	RNA	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	73065194	73065194	A	G	SNP	XIST	ENST00000429829	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	XIST	HGNC	ENSG00000229807				154	0	0	163	16	8.93855
SLC16A2	0	genome.wustl.edu	37	X	73749123	73749123	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	73749123	73749123	G	A	SNP	SLC16A2	ENST00000276033	human	ensembl	74_37	+1	known	missense	c.1468	p.V490I	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A2	HGNC	ENSG00000147100				64	0	0	53	4	7.01754
RLIM	0	genome.wustl.edu	37	X	73812655	73812655	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	73812655	73812655	T	C	SNP	RLIM	ENST00000332687	human	ensembl	74_37	-1	known	silent	c.495	p.G165	0.997	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RLIM	HGNC	ENSG00000131263				203	1	0.490196	151	26	14.6893
KIAA2022	0	genome.wustl.edu	37	X	73963610	73963610	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	73963610	73963610	A	T	SNP	KIAA2022	ENST00000055682	human	ensembl	74_37	-1	known	missense	c.782	p.F261Y	1.000	NULL	NULL	-	no_errors	KIAA2022	HGNC	ENSG00000050030				214	0	0	158	10	5.95238
KIAA2022	0	genome.wustl.edu	37	X	73964288	73964288	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	73964288	73964288	A	G	SNP	KIAA2022	ENST00000055682	human	ensembl	74_37	-1	known	missense	c.104	p.M35T	0.927	NULL	NULL	-	no_errors	KIAA2022	HGNC	ENSG00000050030				28	0	0	26	4	13.3333
ABCB7	0	genome.wustl.edu	37	X	74289248	74289248	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	74289248	74289248	T	C	SNP	ABCB7	ENST00000253577	human	ensembl	74_37	-1	known	silent	c.1410	p.T470	0.957	superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCB7	HGNC	ENSG00000131269				127	0	0	82	23	21.9048
UPRT	0	genome.wustl.edu	37	X	74523346	74523346	+	Nonstop_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	74523346	74523346	A	T	SNP	UPRT	ENST00000373383	human	ensembl	74_37	+1	known	nonstop	c.930	p.*310Y	1.000	NULL	pfam_PRibTrfase_dom	-	no_errors	UPRT	HGNC	ENSG00000094841				97	0	0	64	7	9.85915
PBDC1	0	genome.wustl.edu	37	X	75395397	75395397	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	75395397	75395397	T	C	SNP	PBDC1	ENST00000373358	human	ensembl	74_37	+1	known	silent	c.246	p.L82	0.998	pfam_Put_polysacc_synth	pfam_Put_polysacc_synth	-	no_errors	PBDC1	HGNC	ENSG00000102390				69	0	0	38	5	11.6279
MAGEE1	0	genome.wustl.edu	37	X	75649862	75649862	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	75649862	75649862	G	A	SNP	MAGEE1	ENST00000361470	human	ensembl	74_37	+1	known	silent	c.1539	p.R513	0.001	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEE1	HGNC	ENSG00000198934				114	0	0	75	6	7.40741
MAGEE1	0	genome.wustl.edu	37	X	75650756	75650756	+	Silent	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	75650756	75650756	C	A	SNP	MAGEE1	ENST00000361470	human	ensembl	74_37	+1	known	silent	c.2433	p.S811	0.469	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEE1	HGNC	ENSG00000198934				75	0	0	102	9	8.10811
PGAM4	0	genome.wustl.edu	37	X	77224638	77224638	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	77224638	77224638	G	A	SNP	PGAM4	ENST00000458128	human	ensembl	74_37	-1	known	silent	c.498	p.F166	1.000	pfam_His_Pase_superF_clade-1,smart_His_Pase_superF_clade-1,tigrfam_Phosphogly_mut1	pfam_His_Pase_superF_clade-1,smart_His_Pase_superF_clade-1,tigrfam_Phosphogly_mut1	-	no_errors	PGAM4	HGNC	ENSG00000226784				149	0	0	143	14	8.9172
ATP7A	0	genome.wustl.edu	37	X	77227165	77227165	+	Silent	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	77227165	77227165	T	C	SNP	ATP7A	ENST00000341514	human	ensembl	74_37	+1	known	silent	c.27	p.S9	0.292	superfamily_HeavyMe-assoc_HMA,pfscan_HeavyMe-assoc_HMA,prints_HG_scavenger	pfam_HeavyMe-assoc_HMA,pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_HeavyMe-assoc_HMA,pfscan_HeavyMe-assoc_HMA,prints_Cation_transp_P_typ_ATPase,prints_HG_scavenger,tigrfam_Cation_transp_P-typ_ATPase_IB,tigrfam_Cation_transp_P_typ_ATPase,tigrfam_HMA_Cu_ion-bd	-	no_errors	ATP7A	HGNC	ENSG00000165240				402	0	0	280	27	8.79479
ATP7A	0	genome.wustl.edu	37	X	77254041	77254041	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	77254041	77254041	A	T	SNP	ATP7A	ENST00000341514	human	ensembl	74_37	+1	known	missense	c.1403	p.N468I	0.023	NULL	pfam_HeavyMe-assoc_HMA,pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_HeavyMe-assoc_HMA,pfscan_HeavyMe-assoc_HMA,prints_Cation_transp_P_typ_ATPase,prints_HG_scavenger,tigrfam_Cation_transp_P-typ_ATPase_IB,tigrfam_Cation_transp_P_typ_ATPase,tigrfam_HMA_Cu_ion-bd	-	no_errors	ATP7A	HGNC	ENSG00000165240				271	0	0	192	46	19.3277
PGK1	0	genome.wustl.edu	37	X	77369604	77369604	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	77369604	77369604	C	A	SNP	PGK1	ENST00000373316	human	ensembl	74_37	+1	known	missense	c.364	p.L122I	1.000	pfam_Phosphoglycerate_kinase,superfamily_Phosphoglycerate_kinase,prints_Phosphoglycerate_kinase	pfam_Phosphoglycerate_kinase,superfamily_Phosphoglycerate_kinase,prints_Phosphoglycerate_kinase	-	no_errors	PGK1	HGNC	ENSG00000102144				313	1	0.318471	284	33	10.4101
TAF9B	0	genome.wustl.edu	37	X	77393267	77393267	+	Silent	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	77393267	77393267	C	T	SNP	TAF9B	ENST00000341864	human	ensembl	74_37	-1	known	silent	c.384	p.R128	0.968	pfam_TFIID-31	pfam_TFIID-31,superfamily_Histone-fold	-	no_errors	TAF9B	HGNC	ENSG00000187325				143	0	0	79	14	15.0538
CYSLTR1	0	genome.wustl.edu	37	X	77528568	77528568	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	77528568	77528568	A	G	SNP	CYSLTR1	ENST00000373304	human	ensembl	74_37	-1	known	missense	c.676	p.S226P	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfam_7TM_GPCR_serpentine_rcpt_Srv,prints_CLT1_recept,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfam_7TM_GPCR_serpentine_rcpt_Srv,prints_Cyst_leuk_rcpt,prints_CLT1_recept,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	CYSLTR1	HGNC	ENSG00000173198				62	0	0	39	5	11.3636
P2RY10	0	genome.wustl.edu	37	X	78216180	78216180	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	78216180	78216180	G	T	SNP	P2RY10	ENST00000171757	human	ensembl	74_37	+1	known	missense	c.163	p.A55S	0.943	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	P2RY10	HGNC	ENSG00000078589				151	0	0	111	11	9.01639
TBX22	0	genome.wustl.edu	37	X	79278708	79278708	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	79278708	79278708	G	T	SNP	TBX22	ENST00000373294	human	ensembl	74_37	+1	known	missense	c.325	p.G109W	1.000	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX22	HGNC	ENSG00000122145				76	0	0	92	6	6.12245
BRWD3	0	genome.wustl.edu	37	X	79948491	79948491	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	79948491	79948491	G	A	SNP	BRWD3	ENST00000373275	human	ensembl	74_37	-1	known	nonsense	c.3211	p.Q1071*	1.000	NULL	pfam_WD40_repeat,pfam_Bromodomain,superfamily_Quino_amine_DH_bsu,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Bromodomain	-	no_errors	BRWD3	HGNC	ENSG00000165288				258	0	0	151	56	27.0531
BRWD3	0	genome.wustl.edu	37	X	79978164	79978164	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	79978164	79978164	A	T	SNP	BRWD3	ENST00000373275	human	ensembl	74_37	-1	known	missense	c.1773	p.D591E	1.000	NULL	pfam_WD40_repeat,pfam_Bromodomain,superfamily_Quino_amine_DH_bsu,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Bromodomain	-	no_errors	BRWD3	HGNC	ENSG00000165288				102	0	0	86	5	5.49451
RPS6KA6	0	genome.wustl.edu	37	X	83352817	83352817	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	83352817	83352817	A	G	SNP	RPS6KA6	ENST00000262752	human	ensembl	74_37	-1	known	missense	c.1816	p.W606R	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_dom	-	no_errors	RPS6KA6	HGNC	ENSG00000072133				322	0	0	210	24	10.2564
RPS6KA6	0	genome.wustl.edu	37	X	83359656	83359656	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	83359656	83359656	C	A	SNP	RPS6KA6	ENST00000262752	human	ensembl	74_37	-1	known	missense	c.1465	p.D489Y	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_dom	-	no_errors	RPS6KA6	HGNC	ENSG00000072133				56	0	0	40	5	11.1111
NAP1L3	0	genome.wustl.edu	37	X	92928184	92928184	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	92928184	92928184	G	A	SNP	NAP1L3	ENST00000373079	human	ensembl	74_37	-1	known	silent	c.120	p.S40	0.823	NULL	pfam_NAP_family	-	no_errors	NAP1L3	HGNC	ENSG00000186310				50	0	0	41	5	10.8696
PCDH19	0	genome.wustl.edu	37	X	99551344	99551344	+	Silent	SNP	G	G	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	99551344	99551344	G	A	SNP	PCDH19	ENST00000373034	human	ensembl	74_37	-1	known	silent	c.3378	p.S1126	1.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH19	HGNC	ENSG00000165194				185	0	0	164	13	7.34463
PCDH19	0	genome.wustl.edu	37	X	99661923	99661923	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	99661923	99661923	T	C	SNP	PCDH19	ENST00000373034	human	ensembl	74_37	-1	known	missense	c.1673	p.D558G	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH19	HGNC	ENSG00000165194				128	0	0	126	7	5.26316
SYTL4	0	genome.wustl.edu	37	X	99942073	99942073	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	99942073	99942073	C	T	SNP	SYTL4	ENST00000454200	human	ensembl	74_37	-1	known	missense	c.1181	p.R394H	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_C2_dom,superfamily_C2_dom,superfamily_Znf_FYVE_PHD,smart_C2_dom,pfscan_C2_dom,pfscan_Znf_FYVE-typ,prints_Synaptotagmin	-	no_errors	SYTL4	HGNC	ENSG00000102362				72	0	0	84	11	11.5789
SASS6	0	genome.wustl.edu	37	1	100584676	100584676	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	100584676	100584676	T	-	DEL	SASS6	ENST00000287482	human	ensembl	74_37	-1	known	frame_shift_del	c.567	p.K189fs	0.240	NULL	NULL	-	no_errors	SASS6	HGNC	ENSG00000156876				63	0	0	29	7	19.4444
KIF1B	0	genome.wustl.edu	37	1	10407870	10407871	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	10407870	10407871	-	T	INS	KIF1B	ENST00000263934	human	ensembl	74_37	+1	known	frame_shift_ins	c.3711_3712	p.L1238fs	0.977:1.000	pfam_Kinesin-like	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_Pleckstrin_homology,pfam_KIF1B,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,smart_FHA_dom,smart_Pleckstrin_homology,pfscan_FHA_dom,pfscan_Pleckstrin_homology,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF1B	HGNC	ENSG00000054523				126	0	0	106	8	7.01754
WDR47	0	genome.wustl.edu	37	1	109560141	109560141	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	109560141	109560141	T	-	DEL	WDR47	ENST00000400794	human	ensembl	74_37	-1	known	frame_shift_del	c.241	p.R81fs	1.000	smart_CTLH_C,pfscan_CTLH_C	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_LisH_dimerisation,smart_CTLH_C,smart_WD40_repeat,pfscan_LisH_dimerisation,pfscan_CTLH_C,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR47	HGNC	ENSG00000085433				105	0	0	72	6	7.69231
ST7L	0	genome.wustl.edu	37	1	113084682	113084682	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	113084682	113084682	T	-	DEL	ST7L	ENST00000358039	human	ensembl	74_37	-1	known	frame_shift_del	c.1520	p.K507fs	1.000	pfam_ST7	pfam_ST7	-	no_errors	ST7L	HGNC	ENSG00000007341				82	0	0	51	9	15
LRIG2	0	genome.wustl.edu	37	1	113637348	113637349	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	113637348	113637349	-	T	INS	LRIG2	ENST00000361127	human	ensembl	74_37	+1	known	frame_shift_ins	c.774_775	p.G260fs	0.811:1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Immunoglobulin,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LRIG2	HGNC	ENSG00000198799				153	1	0.649351	112	12	9.67742
HIPK1	0	genome.wustl.edu	37	1	114483078	114483078	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	114483078	114483078	A	-	DEL	HIPK1	ENST00000369558	human	ensembl	74_37	+1	known	frame_shift_del	c.73	p.I26fs	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	HIPK1	HGNC	ENSG00000163349				407	0	0	311	20	6.0423
CD58	0	genome.wustl.edu	37	1	117078661	117078662	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	117078661	117078662	-	T	INS	CD58	ENST00000369489	human	ensembl	74_37	-1	known	frame_shift_ins	c.554_553	p.I185fs	0.001:0.000	NULL	NULL	-	no_errors	CD58	HGNC	ENSG00000116815				95	0	0	78	9	10.3448
HSD3B1	0	genome.wustl.edu	37	1	120056589	120056589	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	120056589	120056589	A	-	DEL	HSD3B1	ENST00000235547	human	ensembl	74_37	+1	known	frame_shift_del	c.449	p.N151fs	0.110	pfam_3Beta_OHSteriod_DH/Estase,pfam_Epimerase_deHydtase,pfam_Male_sterile_NAD-bd,pfam_dTDP_dehydrorham_reduct	pfam_3Beta_OHSteriod_DH/Estase,pfam_Epimerase_deHydtase,pfam_Male_sterile_NAD-bd,pfam_Polysac_CapD-like,pfam_DH_sc/Rdtase_SDR,pfam_dTDP_dehydrorham_reduct,pfam_PKS_KR,pfam_NmrA	-	no_errors	HSD3B1	HGNC	ENSG00000203857				183	0	0	166	13	7.26257
MXRA8	0	genome.wustl.edu	37	1	1290110	1290110	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	1290110	1290110	G	-	DEL	MXRA8	ENST00000445648	human	ensembl	74_37	-1	known	frame_shift_del	c.901	p.R301fs	0.000	NULL	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	MXRA8	HGNC	ENSG00000162576				12	0	0	16	6	27.2727
VWA1	0	genome.wustl.edu	37	1	1372321	1372322	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	1372321	1372322	-	C	INS	VWA1	ENST00000476993	human	ensembl	74_37	+1	known	frame_shift_ins	c.88_89	p.R32fs	0.005:0.010	smart_VWF_A	pfam_VWF_A,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_VWF_A,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	VWA1	HGNC	ENSG00000179403				87	0	0	85	7	7.6087
PDPN	0	genome.wustl.edu	37	1	13910412	13910413	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	13910412	13910413	-	C	INS	PDPN	ENST00000294489	human	ensembl	74_37	+1	known	frame_shift_ins	c.112_113	p.P41fs	0.000:0.000	NULL	pfam_Podoplanin	-	no_errors	PDPN	HGNC	ENSG00000162493				42	0	0	46	8	14.8148
PRDM2	0	genome.wustl.edu	37	1	14106661	14106662	+	Frame_Shift_Del	DEL	GA	GA	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	GA	GA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	14106661	14106662	GA	-	DEL	PRDM2	ENST00000235372	human	ensembl	74_37	+1	known	frame_shift_del	c.2371_2372	p.E793fs	1.000:1.000	pirsf_RIZ_retinblastoma-bd_prot	pfam_SET_dom,smart_SET_dom,smart_Znf_C2H2-like,pirsf_RIZ_retinblastoma-bd_prot,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM2	HGNC	ENSG00000116731				74	0	0	47	13	21.6667
BCL9	0	genome.wustl.edu	37	1	147091501	147091501	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	147091501	147091501	C	-	DEL	BCL9	ENST00000234739	human	ensembl	74_37	+1	known	frame_shift_del	c.1540	p.P516fs	1.000	NULL	pfam_BCL9_beta-catenin-bd_dom	-	no_errors	BCL9	HGNC	ENSG00000116128				135	0	0	124	9	6.76692
MTMR11	0	genome.wustl.edu	37	1	149900796	149900796	+	RNA	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	149900796	149900796	A	-	DEL	MTMR11	ENST00000466496	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	MTMR11	HGNC	ENSG00000014914				89	0	0	49	16	24.6154
PLEKHO1	0	genome.wustl.edu	37	1	150131221	150131222	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	150131221	150131222	-	A	INS	PLEKHO1	ENST00000025469	human	ensembl	74_37	+1	known	frame_shift_ins	c.631_632	p.T213fs	0.999:0.887	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHO1	HGNC	ENSG00000023902				50	0	0	45	7	13.4615
ADAMTSL4	0	genome.wustl.edu	37	1	150526207	150526207	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	150526207	150526207	C	-	DEL	ADAMTSL4	ENST00000369039	human	ensembl	74_37	+1	known	frame_shift_del	c.740	p.L249fs	0.000	pfscan_Thrombospondin_1_rpt	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt	-	no_errors	ADAMTSL4	HGNC	ENSG00000143382				41	0	0	49	7	12.5
RFX5	0	genome.wustl.edu	37	1	151318753	151318753	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	151318753	151318753	C	-	DEL	RFX5	ENST00000290524	human	ensembl	74_37	-1	known	frame_shift_del	c.44	p.G15fs	0.996	NULL	pfam_DNA-bd_RFX	-	no_errors	RFX5	HGNC	ENSG00000143390				115	0	0	145	12	7.64331
S100A8	0	genome.wustl.edu	37	1	153362605	153362605	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	153362605	153362605	T	-	DEL	S100A8	ENST00000368732	human	ensembl	74_37	-1	known	frame_shift_del	c.256	p.S86fs	0.242	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom	-	no_errors	S100A8	HGNC	ENSG00000143546				144	0	0	113	24	17.5182
CRTC2	0	genome.wustl.edu	37	1	153924673	153924673	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	153924673	153924673	C	-	DEL	CRTC2	ENST00000368633	human	ensembl	74_37	-1	known	frame_shift_del	c.818	p.G273fs	1.000	NULL	NULL	-	no_errors	CRTC2	HGNC	ENSG00000160741				81	0	0	60	18	23.0769
NUP210L	0	genome.wustl.edu	37	1	153965403	153965404	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	153965403	153965404	-	A	INS	NUP210L	ENST00000368559	human	ensembl	74_37	-1	known	frame_shift_ins	c.5575_5574	p.N1858fs	0.000:0.000	NULL	pfam_Big_2,superfamily_Invasin/intimin_cell_adhesion,smart_Big_2	-	no_errors	NUP210L	HGNC	ENSG00000143552				204	0	0	175	12	6.41711
ADAR	0	genome.wustl.edu	37	1	154570393	154570393	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	154570393	154570393	G	-	DEL	ADAR	ENST00000292205	human	ensembl	74_37	-1	known	frame_shift_del	c.1974	p.V659fs	0.415	pfam_dsRNA-bd_dom,smart_dsRNA-bd_dom,pfscan_dsRNA-bd_dom	pfam_A_deamin,pfam_dsRNA_A_deaminase,pfam_dsRNA-bd_dom,smart_dsRNA_A_deaminase,smart_dsRNA-bd_dom,smart_A_deamin,pfscan_dsRNA-bd_dom,pfscan_dsRNA_A_deaminase,pfscan_A_deamin	-	no_errors	ADAR	HGNC	ENSG00000160710				60	0	0	65	9	12.1622
PBXIP1	0	genome.wustl.edu	37	1	154924316	154924317	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	154924316	154924317	-	T	INS	PBXIP1	ENST00000490230	human	ensembl	74_37	-1	known	frame_shift_ins	c.133_132	p.S44fs	0.002:0.003	NULL	NULL	-	no_errors	PBXIP1	HGNC	ENSG00000163346				205	0	0	180	14	7.21649
SHC1	0	genome.wustl.edu	37	1	154942910	154942911	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	154942910	154942911	-	G	INS	SHC1	ENST00000368445	human	ensembl	74_37	-1	known	frame_shift_ins	c.93_92	p.E32fs	1.000:1.000	NULL	pfam_PTB/PI_dom,pfam_SH2,smart_PTB/PI_dom,smart_SH2,pfscan_PTB/PI_dom,pfscan_SH2,prints_PID_Shc-like,prints_SH2	-	no_errors	SHC1	HGNC	ENSG00000160691				53	0	0	47	12	20.339
EFNA4	0	genome.wustl.edu	37	1	155041388	155041388	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	155041388	155041388	G	-	DEL	EFNA4	ENST00000368409	human	ensembl	74_37	+1	known	frame_shift_del	c.529	p.D179fs	0.930	NULL	pfam_Ephrin,superfamily_Cupredoxin,prints_Ephrin	-	no_errors	EFNA4	HGNC	ENSG00000243364				58	0	0	55	15	21.4286
THBS3	0	genome.wustl.edu	37	1	155172646	155172646	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	155172646	155172646	G	-	DEL	THBS3	ENST00000368378	human	ensembl	74_37	-1	known	frame_shift_del	c.914	p.P305fs	0.150	smart_EG-like_dom	pfam_Thrombospondin_C,pfam_Thbs/COMP_coiled-coil,pfam_Thrombospondin_3-like_rpt,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	THBS3	HGNC	ENSG00000169231				98	0	0	112	7	5.88235
DAP3	0	genome.wustl.edu	37	1	155706792	155706793	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	155706792	155706793	-	A	INS	DAP3	ENST00000343043	human	ensembl	74_37	+1	known	frame_shift_ins	c.1049_1050	p.E352fs	1.000:0.998	pfam_Ribosomal_S23/S29_mit,superfamily_P-loop_NTPase	pfam_Ribosomal_S23/S29_mit,superfamily_P-loop_NTPase,prints_Ribosomal_S29_mit	-	no_errors	DAP3	HGNC	ENSG00000132676				199	0	0	140	17	10.828
TMEM79	0	genome.wustl.edu	37	1	156255498	156255498	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	156255498	156255498	C	-	DEL	TMEM79	ENST00000295694	human	ensembl	74_37	+1	known	frame_shift_del	c.481	p.R163fs	0.004	NULL	NULL	-	no_errors	TMEM79	HGNC	ENSG00000163472				56	0	0	53	19	26.3889
NES	0	genome.wustl.edu	37	1	156642804	156642804	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	156642804	156642804	G	-	DEL	NES	ENST00000368223	human	ensembl	74_37	-1	known	frame_shift_del	c.1176	p.T393fs	0.087	NULL	pfam_IF	-	no_errors	NES	HGNC	ENSG00000132688				198	0	0	212	18	7.82609
ISG20L2	0	genome.wustl.edu	37	1	156694023	156694023	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	156694023	156694023	G	-	DEL	ISG20L2	ENST00000313146	human	ensembl	74_37	-1	known	frame_shift_del	c.865	p.L289fs	0.997	pfam_Exonuclease_RNaseT/DNA_pol3,superfamily_RNaseH-like_dom,smart_Exonuclease	pfam_Exonuclease_RNaseT/DNA_pol3,superfamily_RNaseH-like_dom,smart_Exonuclease	-	no_errors	ISG20L2	HGNC	ENSG00000143319				109	1	0.909091	92	26	22.0339
MRPL24	0	genome.wustl.edu	37	1	156707205	156707207	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	156707205	156707207	CTT	-	DEL	MRPL24	ENST00000361531	human	ensembl	74_37	-1	known	in_frame_del	c.636_634	p.K212in_frame_del	0.991:1.000:1.000	NULL	pfam_KOW,superfamily_Translation_prot_SH3-like,smart_KOW,tigrfam_Ribosomal_L24	-	no_errors	MRPL24	HGNC	ENSG00000143314				115	0	0	109	6	5.21739
SH2D2A	0	genome.wustl.edu	37	1	156779524	156779524	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	156779524	156779524	G	-	DEL	SH2D2A	ENST00000392306	human	ensembl	74_37	-1	known	frame_shift_del	c.673	p.Q225fs	0.000	NULL	pfam_SH2,smart_SH2,pfscan_SH2	-	no_errors	SH2D2A	HGNC	ENSG00000027869				211	0	0	175	36	17.0616
COPA	0	genome.wustl.edu	37	1	160267486	160267486	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	160267486	160267486	T	-	DEL	COPA	ENST00000368069	human	ensembl	74_37	-1	known	frame_shift_del	c.2054	p.K685fs	1.000	pfam_Coatomer_WD-assoc_reg,pirsf_Coatomer_asu	pfam_Coatomer_asu_C,pfam_Coatomer_WD-assoc_reg,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_Coatomer_asu,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	COPA	HGNC	ENSG00000122218				127	0	0	111	7	5.9322
ARHGAP30	0	genome.wustl.edu	37	1	161039361	161039361	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	161039361	161039361	A	-	DEL	ARHGAP30	ENST00000368013	human	ensembl	74_37	-1	known	frame_shift_del	c.54	p.F18fs	0.998	superfamily_Rho_GTPase_activation_prot	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP30	HGNC	ENSG00000186517				87	0	0	81	20	19.802
NDUFS2	0	genome.wustl.edu	37	1	161179937	161179937	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	161179937	161179937	T	-	DEL	NDUFS2	ENST00000367993	human	ensembl	74_37	+1	known	frame_shift_del	c.739	p.S248fs	1.000	pfam_NADH_Q_OxRdtase_suD,tigrfam_NDH1_su_D/H	pfam_NADH_Q_OxRdtase_suD,tigrfam_NDH1_su_D/H	-	no_errors	NDUFS2	HGNC	ENSG00000158864				112	0	0	96	9	8.57143
SPEN	0	genome.wustl.edu	37	1	16258944	16258944	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	16258944	16258944	A	-	DEL	SPEN	ENST00000375759	human	ensembl	74_37	+1	known	frame_shift_del	c.6209	p.N2072fs	0.990	NULL	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC_like_C_dom,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526				107	0	0	102	9	8.10811
EPHA2	0	genome.wustl.edu	37	1	16462199	16462199	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	16462199	16462199	G	-	DEL	EPHA2	ENST00000358432	human	ensembl	74_37	-1	known	frame_shift_del	c.1379	p.P460fs	0.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Fibronectin_type3,pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHA2	HGNC	ENSG00000142627				72	0	0	68	9	11.6883
EPHA2	0	genome.wustl.edu	37	1	16474977	16474977	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	16474977	16474977	C	-	DEL	EPHA2	ENST00000358432	human	ensembl	74_37	-1	known	frame_shift_del	c.719	p.G240fs	0.042	pirsf_Tyr_kinase_ephrin_rcpt	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHA2	HGNC	ENSG00000142627				49	0	0	87	7	7.44681
POGK	0	genome.wustl.edu	37	1	166815879	166815880	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	166815879	166815880	-	A	INS	POGK	ENST00000367875	human	ensembl	74_37	+1	known	frame_shift_ins	c.163_164	p.Y55fs	1.000:1.000	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	pfam_DDE_SF_endonuclease_CENPB-like,pfam_Brinker_DNA-bd,pfam_HTH_CenpB_DNA-bd_dom,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,superfamily_Homeodomain-like,smart_Krueppel-associated_box,smart_HTH_CenpB_DNA-bd_dom,pfscan_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	POGK	HGNC	ENSG00000143157				168	0	0	128	13	9.21986
PRRC2C	0	genome.wustl.edu	37	1	171510134	171510135	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	171510134	171510135	AG	-	DEL	PRRC2C	ENST00000392078	human	ensembl	74_37	+1	known	frame_shift_del	c.3529_3530	p.D1180fs	1.000:1.000	NULL	pfam_BAT2_N	-	no_errors	PRRC2C	HGNC	ENSG00000117523				100	0	0	92	7	7.07071
CENPL	0	genome.wustl.edu	37	1	173776460	173776461	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	173776460	173776461	-	A	INS	CENPL	ENST00000356198	human	ensembl	74_37	-1	known	frame_shift_ins	c.365_364	p.S122fs	1.000:1.000	NULL	NULL	-	no_errors	CENPL	HGNC	ENSG00000120334				160	0	0	115	12	9.44882
SMG7	0	genome.wustl.edu	37	1	183514090	183514090	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	183514090	183514090	C	-	DEL	SMG7	ENST00000507469	human	ensembl	74_37	+1	known	frame_shift_del	c.1875	p.P627fs	0.992	NULL	pfam_EST1	-	no_errors	SMG7	HGNC	ENSG00000116698				141	0	0	130	14	9.72222
TMCO4	0	genome.wustl.edu	37	1	20009620	20009620	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	20009620	20009620	G	-	DEL	TMCO4	ENST00000294543	human	ensembl	74_37	-1	known	frame_shift_del	c.1818	p.I607fs	0.000	NULL	pfam_DUF726,pfam_DUF900_hydrolase	-	no_errors	TMCO4	HGNC	ENSG00000162542				81	0	0	54	21	28
KIF14	0	genome.wustl.edu	37	1	200534700	200534700	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	200534700	200534700	A	-	DEL	KIF14	ENST00000367350	human	ensembl	74_37	-1	known	frame_shift_del	c.3759	p.F1253fs	0.403	NULL	pfam_Kinesin_motor_dom,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,smart_FHA_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF14	HGNC	ENSG00000118193				91	0	0	48	8	14.2857
CAMSAP2	0	genome.wustl.edu	37	1	200818495	200818495	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	200818495	200818495	C	-	DEL	CAMSAP2	ENST00000236925	human	ensembl	74_37	+1	known	frame_shift_del	c.2631	p.S879fs	0.977	NULL	pfam_CKK_domain,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_PRC_barrel-like,superfamily_CH-domain	-	no_errors	CAMSAP2	HGNC	ENSG00000118200				221	0	0	154	22	12.5
IPO9	0	genome.wustl.edu	37	1	201828050	201828050	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	201828050	201828050	A	-	DEL	IPO9	ENST00000361565	human	ensembl	74_37	+1	known	frame_shift_del	c.1396	p.N467fs	1.000	superfamily_ARM-type_fold	pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	IPO9	HGNC	ENSG00000198700				83	0	0	65	7	9.72222
KDM5B	0	genome.wustl.edu	37	1	202704625	202704625	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	202704625	202704625	T	-	DEL	KDM5B	ENST00000367264	human	ensembl	74_37	-1	known	frame_shift_del	c.3463	p.S1155fs	0.000	NULL	pfam_Lys_sp_deMease_like_dom,pfam_JmjC_dom,pfam_Znf_PHD-finger,pfam_ARID/BRIGHT_DNA-bd,pfam_Znf_C5HC2,pfam_TF_JmjN,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_Znf_PHD,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	KDM5B	HGNC	ENSG00000117139				126	0	0	97	14	12.6126
PLEKHA6	0	genome.wustl.edu	37	1	204228411	204228411	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	204228411	204228411	C	-	DEL	PLEKHA6	ENST00000272203	human	ensembl	74_37	-1	known	frame_shift_del	c.982	p.V328fs	0.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHA6	HGNC	ENSG00000143850				37	0	0	43	12	21.8182
NFASC	0	genome.wustl.edu	37	1	204924033	204924033	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	204924033	204924033	C	-	DEL	NFASC	ENST00000367172	human	ensembl	74_37	+1	known	frame_shift_del	c.489	p.P165fs	1.000	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	NFASC	HGNC	ENSG00000163531				214	0	0	193	34	14.978
PFKFB2	0	genome.wustl.edu	37	1	207240883	207240884	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	207240883	207240884	-	T	INS	PFKFB2	ENST00000367080	human	ensembl	74_37	+1	known	frame_shift_ins	c.672_673	p.L225fs	0.557:1.000	pfam_6Phosfructo_kin,superfamily_P-loop_NTPase,pirsf_Bifunct_6PFK/fruc_bisP_Ptase	pfam_6Phosfructo_kin,pfam_His_Pase_superF_clade-1,pfam_Chromatin_KTI12,superfamily_P-loop_NTPase,smart_His_Pase_superF_clade-1,pirsf_Bifunct_6PFK/fruc_bisP_Ptase,prints_6Pfruct_kin	-	no_errors	PFKFB2	HGNC	ENSG00000123836				152	0	0	104	9	7.9646
CR2	0	genome.wustl.edu	37	1	207642044	207642044	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	207642044	207642044	C	-	DEL	CR2	ENST00000367057	human	ensembl	74_37	+1	known	frame_shift_del	c.618	p.T209fs	0.000	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CR2	HGNC	ENSG00000117322				177	0	0	144	10	6.49351
SERTAD4	0	genome.wustl.edu	37	1	210411419	210411419	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	210411419	210411419	C	-	DEL	SERTAD4	ENST00000367012	human	ensembl	74_37	+1	known	frame_shift_del	c.114	p.P40fs	0.936	NULL	pfam_SERTA,pfscan_SERTA	-	no_errors	SERTAD4	HGNC	ENSG00000082497				131	0	0	96	16	14.2857
LBR	0	genome.wustl.edu	37	1	225607082	225607084	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	225607082	225607084	CTT	-	DEL	LBR	ENST00000272163	human	ensembl	74_37	-1	known	in_frame_del	c.523_521	p.E174in_frame_del	0.008:0.165:0.955	NULL	pfam_Ergosterol_biosynth_ERG4_ERG24,pfam_Lamin-B_rcpt_of_tudor,pfam_DUF1295,smart_Tudor	-	no_errors	LBR	HGNC	ENSG00000143815				152	0	0	98	10	9.25926
OBSCN	0	genome.wustl.edu	37	1	228401963	228401963	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	228401963	228401963	C	-	DEL	OBSCN	ENST00000422127	human	ensembl	74_37	+1	known	frame_shift_del	c.1347	p.V451fs	0.000	smart_Ig_sub	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358				75	0	0	81	5	5.81395
RAB4A	0	genome.wustl.edu	37	1	229431635	229431637	+	In_Frame_Del	DEL	CTC	CTC	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	229431635	229431637	CTC	-	DEL	RAB4A	ENST00000366690	human	ensembl	74_37	+1	known	in_frame_del	c.268_270	p.L91in_frame_del	0.922:0.930:0.471	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB4A	HGNC	ENSG00000168118				96	0	0	81	11	11.9565
AGT	0	genome.wustl.edu	37	1	230839055	230839055	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	230839055	230839055	A	-	DEL	AGT	ENST00000366667	human	ensembl	74_37	-1	known	frame_shift_del	c.1290	p.F430fs	0.354	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom,prints_Angiotensinogen	-	no_errors	AGT	HGNC	ENSG00000135744				92	0	0	64	6	8.57143
SIPA1L2	0	genome.wustl.edu	37	1	232575072	232575072	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	232575072	232575072	G	-	DEL	SIPA1L2	ENST00000262861	human	ensembl	74_37	-1	known	frame_shift_del	c.3813	p.C1272fs	0.001	NULL	pfam_DUF3401,pfam_Rap_GAP_dom,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP_dom	-	no_errors	SIPA1L2	HGNC	ENSG00000116991				58	0	0	86	5	5.49451
MAP10	0	genome.wustl.edu	37	1	232942991	232942991	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	232942991	232942991	A	-	DEL	MAP10	ENST00000418460	human	ensembl	74_37	+1	known	frame_shift_del	c.2222	p.K743fs	0.013	NULL	NULL	-	no_errors	MAP10	HGNC	ENSG00000212916				107	0	0	83	13	13.5417
LYST	0	genome.wustl.edu	37	1	235972662	235972663	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	235972662	235972663	-	T	INS	LYST	ENST00000389793	human	ensembl	74_37	-1	known	frame_shift_ins	c.1456_1455	p.V485fs	1.000:0.998	superfamily_ARM-type_fold	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	LYST	HGNC	ENSG00000143669				136	0	0	82	18	18
NID1	0	genome.wustl.edu	37	1	236154239	236154239	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	236154239	236154239	G	-	DEL	NID1	ENST00000264187	human	ensembl	74_37	-1	known	frame_shift_del	c.2875	p.L959fs	0.996	NULL	pfam_G2_nidogen/fibulin_G2F,pfam_LDLR_classB_rpt,pfam_Nidogen_extracell_dom,pfam_Thyroglobulin_1,pfam_EGF-like_Ca-bd_dom,superfamily_GFP,superfamily_Thyroglobulin_1,smart_Nidogen_extracell_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_G2_nidogen/fibulin_G2F,smart_Thyroglobulin_1,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDLR_classB_rpt,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thyroglobulin_1	-	no_errors	NID1	HGNC	ENSG00000116962				91	0	0	92	5	5.15464
PLD5	0	genome.wustl.edu	37	1	242428735	242428736	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	242428735	242428736	-	A	INS	PLD5	ENST00000536534	human	ensembl	74_37	-1	known	frame_shift_ins	c.511_510	p.E170fs	1.000:1.000	NULL	smart_PLipase_D/transphosphatidylase	-	no_errors	PLD5	HGNC	ENSG00000180287				50	0	0	39	7	15.2174
OR14C36	0	genome.wustl.edu	37	1	248512384	248512384	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	248512384	248512384	T	-	DEL	OR14C36	ENST00000317861	human	ensembl	74_37	+1	known	frame_shift_del	c.308	p.F105fs	0.004	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR14C36	HGNC	ENSG00000177174				68	0	0	58	6	9.375
OR2T4	0	genome.wustl.edu	37	1	248525680	248525681	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	248525680	248525681	-	A	INS	OR2T4	ENST00000366475	human	ensembl	74_37	+1	known	frame_shift_ins	c.798_799	p.A268fs	0.000:0.001	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2T4	HGNC	ENSG00000196944				182	0	0	141	15	9.61538
SRRM1	0	genome.wustl.edu	37	1	24977948	24977949	+	Frame_Shift_Del	DEL	GA	GA	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	GA	GA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	24977948	24977949	GA	-	DEL	SRRM1	ENST00000447431	human	ensembl	74_37	+1	known	frame_shift_del	c.570_571	p.R193fs	1.000:1.000	NULL	pfam_PWI_dom,superfamily_PWI_dom,smart_PWI_dom	-	no_errors	SRRM1	HGNC	ENSG00000133226				89	0	0	64	13	16.8831
LDLRAP1	0	genome.wustl.edu	37	1	25889632	25889632	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	25889632	25889632	T	-	DEL	LDLRAP1	ENST00000374338	human	ensembl	74_37	+1	known	frame_shift_del	c.604	p.S202fs	0.000	NULL	pfam_PTB/PI_dom,pfam_PTB,smart_PTB/PI_dom,pfscan_PTB/PI_dom	-	no_errors	LDLRAP1	HGNC	ENSG00000157978				60	0	0	66	7	9.58904
ARID1A	0	genome.wustl.edu	37	1	27100182	27100184	+	In_Frame_Del	DEL	GCA	GCA	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	GCA	GCA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	27100182	27100184	GCA	-	DEL	ARID1A	ENST00000324856	human	ensembl	74_37	+1	known	in_frame_del	c.3978_3980	p.Q1330in_frame_del	0.986:0.981:0.931	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1A	HGNC	ENSG00000117713				82	0	0	104	6	5.45455
ARID1A	0	genome.wustl.edu	37	1	27105931	27105931	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	27105931	27105931	G	-	DEL	ARID1A	ENST00000324856	human	ensembl	74_37	+1	known	frame_shift_del	c.5542	p.D1850fs	1.000	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1A	HGNC	ENSG00000117713				111	0	0	63	54	46.1538
AHDC1	0	genome.wustl.edu	37	1	27876869	27876869	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	27876869	27876869	T	-	DEL	AHDC1	ENST00000247087	human	ensembl	74_37	-1	known	frame_shift_del	c.1758	p.K586fs	0.415	NULL	NULL	-	no_errors	AHDC1	HGNC	ENSG00000126705				75	0	0	63	14	18.1818
PUM1	0	genome.wustl.edu	37	1	31426582	31426583	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	31426582	31426583	-	A	INS	PUM1	ENST00000426105	human	ensembl	74_37	-1	known	frame_shift_ins	c.2570_2569	p.S857fs	1.000:1.000	pfam_Pumilio_RNA-bd_rpt,superfamily_ARM-type_fold,smart_Pumilio_RNA-bd_rpt,pfscan_Pumilio_RNA-bd_rpt	pfam_Pumilio_RNA-bd_rpt,superfamily_ARM-type_fold,smart_Pumilio_RNA-bd_rpt,pfscan_Pumilio_RNA-bd_rpt	-	no_errors	PUM1	HGNC	ENSG00000134644				276	0	0	224	20	8.19672
HDAC1	0	genome.wustl.edu	37	1	32797831	32797833	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	GAG	GAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	32797831	32797833	GAG	-	DEL	HDAC1	ENST00000373548	human	ensembl	74_37	+1	known	in_frame_del	c.1360_1362	p.E455in_frame_del	1.000:1.000:0.967	NULL	pfam_His_deacetylse_dom,pirsf_His_deacetylse_1,prints_His_deacetylse_1,prints_His_deacetylse	-	no_errors	HDAC1	HGNC	ENSG00000116478				99	0	0	90	7	7.21649
GJA4	0	genome.wustl.edu	37	1	35260727	35260727	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	35260727	35260727	C	-	DEL	GJA4	ENST00000342280	human	ensembl	74_37	+1	known	frame_shift_del	c.913	p.P306fs	0.001	NULL	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin,prints_Connexin37	-	no_errors	GJA4	HGNC	ENSG00000187513				35	0	0	29	7	19.4444
CSF3R	0	genome.wustl.edu	37	1	36935323	36935323	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	36935323	36935323	G	-	DEL	CSF3R	ENST00000373103	human	ensembl	74_37	-1	known	frame_shift_del	c.1404	p.S469fs	0.425	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_IgC2-like_lig-bd,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	CSF3R	HGNC	ENSG00000119535				133	0	0	101	14	12.1739
SMAP2	0	genome.wustl.edu	37	1	40878734	40878734	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	40878734	40878734	A	-	DEL	SMAP2	ENST00000372718	human	ensembl	74_37	+1	known	frame_shift_del	c.449	p.K152fs	1.000	NULL	pfam_ArfGAP,smart_ArfGAP,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	SMAP2	HGNC	ENSG00000084070				97	0	0	58	14	19.4444
HIVEP3	0	genome.wustl.edu	37	1	42050006	42050007	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	42050006	42050007	-	G	INS	HIVEP3	ENST00000247584	human	ensembl	74_37	-1	known	frame_shift_ins	c.463_462	p.E154fs	0.997:0.766	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP3	HGNC	ENSG00000127124				136	0	0	125	9	6.71642
SZT2	0	genome.wustl.edu	37	1	43905341	43905341	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	43905341	43905341	C	-	DEL	SZT2	ENST00000562955	human	ensembl	74_37	+1	known	frame_shift_del	c.6772	p.S2260fs	0.994	NULL	NULL	-	no_errors	SZT2	HGNC	ENSG00000198198				91	0	0	109	14	11.3821
RNF220	0	genome.wustl.edu	37	1	45111159	45111162	+	Frame_Shift_Del	DEL	AAGT	AAGT	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	AAGT	AAGT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	45111159	45111162	AAGT	-	DEL	RNF220	ENST00000355387	human	ensembl	74_37	+1	known	frame_shift_del	c.1444_1445	p.K482fs	1.000:1.000	superfamily_Peptidase_M20_dimer	superfamily_Peptidase_M20_dimer,pfscan_Znf_RING	-	no_errors	RNF220	HGNC	ENSG00000187147				24	0	0	9	5	35.7143
ZCCHC11	0	genome.wustl.edu	37	1	52991780	52991780	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	52991780	52991780	T	-	DEL	ZCCHC11	ENST00000257177	human	ensembl	74_37	-1	known	frame_shift_del	c.173	p.N58fs	0.998	NULL	pfam_PAP_assoc,pfam_Znf_CCHC,pfam_Nucleotidyltransferase,superfamily_Znf_CCHC,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC11	HGNC	ENSG00000134744				124	0	0	77	17	18.0851
C1orf168	0	genome.wustl.edu	37	1	57257958	57257958	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	57257958	57257958	C	-	DEL	C1orf168	ENST00000343433	human	ensembl	74_37	-1	known	frame_shift_del	c.528	p.T178fs	0.000	NULL	superfamily_SH3_domain	-	no_errors	C1orf168	HGNC	ENSG00000187889				170	0	0	135	14	9.39597
FGGY	0	genome.wustl.edu	37	1	59812017	59812017	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	59812017	59812017	G	-	DEL	FGGY	ENST00000303721	human	ensembl	74_37	+1	known	frame_shift_del	c.412	p.V140fs	0.997	pfam_Carb_kinase_FGGY_N,tigrfam_Carb_kinase_FGGY-rel	pfam_Carb_kinase_FGGY_C,pfam_Carb_kinase_FGGY_N,tigrfam_Carb_kinase_FGGY-rel	-	no_errors	FGGY	HGNC	ENSG00000172456				66	0	0	43	15	25.8621
GNG12	0	genome.wustl.edu	37	1	68171151	68171151	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	68171151	68171151	T	-	DEL	GNG12	ENST00000370982	human	ensembl	74_37	-1	known	frame_shift_del	c.202	p.T68fs	1.000	smart_G-protein_gamma-like_dom,pfscan_G-protein_gamma-like_dom	pfam_G-protein_gamma-like_dom,superfamily_G-protein_gamma-like_dom,smart_G-protein_gamma-like_dom,pfscan_G-protein_gamma-like_dom,prints_Gprotein-gamma	-	no_errors	GNG12	HGNC	ENSG00000172380				145	0	0	87	30	25.641
RPE65	0	genome.wustl.edu	37	1	68910267	68910267	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	68910267	68910267	C	-	DEL	RPE65	ENST00000262340	human	ensembl	74_37	-1	known	frame_shift_del	c.442	p.E148fs	1.000	pfam_Carotenoid_Oase	pfam_Carotenoid_Oase	-	no_errors	RPE65	HGNC	ENSG00000116745				133	0	0	108	8	6.89655
LRRIQ3	0	genome.wustl.edu	37	1	74507219	74507220	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	74507219	74507220	-	T	INS	LRRIQ3	ENST00000354431	human	ensembl	74_37	-1	known	frame_shift_ins	c.1396_1395	p.Y465fs	0.000:0.000	NULL	pfscan_IQ_motif_EF-hand-BS	-	no_errors	LRRIQ3	HGNC	ENSG00000162620				218	0	0	137	16	10.4575
ASB17	0	genome.wustl.edu	37	1	76387916	76387916	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	76387916	76387916	T	-	DEL	ASB17	ENST00000284142	human	ensembl	74_37	-1	known	frame_shift_del	c.530	p.N177fs	0.996	superfamily_Ankyrin_rpt-contain_dom	pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_SOCS_C,pfscan_SOCS_C	-	no_errors	ASB17	HGNC	ENSG00000154007				85	0	0	52	14	21.2121
IFI44L	0	genome.wustl.edu	37	1	79101047	79101048	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	79101047	79101048	-	A	INS	IFI44L	ENST00000370751	human	ensembl	74_37	+1	known	frame_shift_ins	c.749_750	p.N252fs	0.747:0.234	superfamily_P-loop_NTPase	superfamily_P-loop_NTPase	-	no_errors	IFI44L	HGNC	ENSG00000137959				104	0	0	65	11	14.4737
ERRFI1	0	genome.wustl.edu	37	1	8073426	8073426	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	8073426	8073426	A	-	DEL	ERRFI1	ENST00000377482	human	ensembl	74_37	-1	known	frame_shift_del	c.1233	p.F411fs	0.139	NULL	pfam_Cdc42_binding_dom_like,pfam_Inhibitor_Mig-6	-	no_errors	ERRFI1	HGNC	ENSG00000116285				168	0	0	128	26	16.8831
SPATA1	0	genome.wustl.edu	37	1	84986284	84986284	+	RNA	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	84986284	84986284	T	-	DEL	SPATA1	ENST00000370638	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SPATA1	HGNC	ENSG00000122432				34	0	0	13	5	27.7778
COL24A1	0	genome.wustl.edu	37	1	86283753	86283753	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	86283753	86283753	T	-	DEL	COL24A1	ENST00000370571	human	ensembl	74_37	-1	known	frame_shift_del	c.3807	p.G1270fs	1.000	pfam_Collagen	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL24A1	HGNC	ENSG00000171502				218	0	0	179	12	6.28272
CLCA4	0	genome.wustl.edu	37	1	87026013	87026013	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	87026013	87026013	A	-	DEL	CLCA4	ENST00000370563	human	ensembl	74_37	+1	known	frame_shift_del	c.420	p.K142fs	0.674	pfam_Cl_channel_Ca,tigrfam_CaCC_prot	pfam_Cl_channel_Ca,pfam_DUF1973,pfam_VWF_A,superfamily_Fibronectin_type3,smart_VWF_A,pfscan_VWF_A,tigrfam_CaCC_prot	-	no_errors	CLCA4	HGNC	ENSG00000016602				69	0	0	51	14	21.5385
CDC7	0	genome.wustl.edu	37	1	91973481	91973482	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	91973481	91973482	-	A	INS	CDC7	ENST00000234626	human	ensembl	74_37	+1	known	frame_shift_ins	c.186_187	p.I63fs	1.000:1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDC7	HGNC	ENSG00000097046				352	0	0	246	21	7.86517
CCDC18	0	genome.wustl.edu	37	1	93667516	93667516	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	93667516	93667516	A	-	DEL	CCDC18	ENST00000557479	human	ensembl	74_37	+1	known	frame_shift_del	c.1120	p.V377fs	1.000	NULL	superfamily_Prefoldin,superfamily_tRNA-bd_arm	-	no_errors	CCDC18	HGNC	ENSG00000122483				117	1	0.847458	62	11	15.0685
CCDC18	0	genome.wustl.edu	37	1	93720123	93720124	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	93720123	93720124	-	A	INS	CCDC18	ENST00000557479	human	ensembl	74_37	+1	known	frame_shift_ins	c.3648_3649	p.E1218fs	1.000:1.000	NULL	superfamily_Prefoldin,superfamily_tRNA-bd_arm	-	no_errors	CCDC18	HGNC	ENSG00000122483				213	0	0	131	11	7.74648
SLC44A3	0	genome.wustl.edu	37	1	95357932	95357932	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	1	95357932	95357932	T	-	DEL	SLC44A3	ENST00000271227	human	ensembl	74_37	+1	known	frame_shift_del	c.1716	p.F574fs	0.782	pfam_Choline_transptr-like	pfam_Choline_transptr-like	-	no_errors	SLC44A3	HGNC	ENSG00000143036				193	1	0.515464	165	12	6.77966
HPSE2	0	genome.wustl.edu	37	10	100401612	100401612	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	100401612	100401612	T	-	DEL	HPSE2	ENST00000370552	human	ensembl	74_37	-1	known	frame_shift_del	c.1090	p.I364fs	1.000	pfam_Glyco_hydro_79,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_79,superfamily_Glycoside_hydrolase_SF	-	no_errors	HPSE2	HGNC	ENSG00000172987				317	0	0	240	17	6.61479
PAX2	0	genome.wustl.edu	37	10	102587324	102587324	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	102587324	102587324	C	-	DEL	PAX2	ENST00000428433	human	ensembl	74_37	+1	known	frame_shift_del	c.1202	p.R403fs	1.000	pfam_Pax2_C	pfam_Paired_dom,pfam_Pax2_C,superfamily_Homeodomain-like,smart_Paired_dom,pfscan_Paired_dom,prints_Paired_dom	-	no_errors	PAX2	HGNC	ENSG00000075891				107	0	0	77	16	17.2043
BTRC	0	genome.wustl.edu	37	10	103298049	103298050	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	103298049	103298050	-	A	INS	BTRC	ENST00000370187	human	ensembl	74_37	+1	known	frame_shift_ins	c.1579_1578	p.I529fs	1.000:0.928	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	pfam_WD40_repeat,pfam_Beta-TrCP_D,pfam_F-box_dom,superfamily_WD40_repeat_dom,superfamily_F-box_dom,smart_F-box_dom,smart_WD40_repeat,pfscan_F-box_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	BTRC	HGNC	ENSG00000166167				143	0	0	107	7	6.14035
ELOVL3	0	genome.wustl.edu	37	10	103988776	103988776	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	103988776	103988776	C	-	DEL	ELOVL3	ENST00000370005	human	ensembl	74_37	+1	known	frame_shift_del	c.580	p.K196fs	0.000	pfam_GNS1_SUR4	pfam_GNS1_SUR4	-	no_errors	ELOVL3	HGNC	ENSG00000119915				66	0	0	50	16	24.2424
NRAP	0	genome.wustl.edu	37	10	115348832	115348832	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	115348832	115348832	C	-	DEL	NRAP	ENST00000369358	human	ensembl	74_37	-1	known	frame_shift_del	c.5119	p.A1707fs	0.001	NULL	pfam_Nebulin_35r-motif,pfam_Znf_LIM,smart_Znf_LIM,smart_Nebulin_35r-motif,pfscan_Znf_LIM,pfscan_Nebulin_35r-motif,prints_Nebulin	-	no_errors	NRAP	HGNC	ENSG00000197893				79	0	0	63	14	18.1818
DCLRE1A	0	genome.wustl.edu	37	10	115602115	115602116	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	115602115	115602116	-	T	INS	DCLRE1A	ENST00000361384	human	ensembl	74_37	-1	known	frame_shift_ins	c.2652_2651	p.K885fs	1.000:1.000	NULL	pfam_DRMBL	-	no_errors	DCLRE1A	HGNC	ENSG00000198924				179	0	0	118	16	11.9403
NHLRC2	0	genome.wustl.edu	37	10	115662308	115662308	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	115662308	115662308	A	-	DEL	NHLRC2	ENST00000369301	human	ensembl	74_37	+1	known	frame_shift_del	c.1450	p.R486fs	0.833	pfam_NHL_repeat,pfscan_NHL_repeat_subgr	pfam_NHL_repeat,superfamily_Thioredoxin-like_fold,pfscan_NHL_repeat_subgr	-	no_errors	NHLRC2	HGNC	ENSG00000196865				213	0	0	139	13	8.55263
PDZD8	0	genome.wustl.edu	37	10	119042898	119042898	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	119042898	119042898	T	-	DEL	PDZD8	ENST00000334464	human	ensembl	74_37	-1	known	frame_shift_del	c.3346	p.I1116fs	0.572	NULL	pfam_PDZ,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_PDZ,smart_PDZ,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_PDZ,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	PDZD8	HGNC	ENSG00000165650				130	0	0	90	9	9.09091
UPF2	0	genome.wustl.edu	37	10	12056070	12056070	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	12056070	12056070	A	-	DEL	UPF2	ENST00000356352	human	ensembl	74_37	-1	known	frame_shift_del	c.1259	p.L420fs	1.000	NULL	pfam_MIF4G-like_typ-3,pfam_Up-fram_suppressor-2,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3	-	no_errors	UPF2	HGNC	ENSG00000151461				98	0	0	100	7	6.54206
INPP5F	0	genome.wustl.edu	37	10	121571462	121571462	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	121571462	121571462	C	-	DEL	INPP5F	ENST00000361976	human	ensembl	74_37	+1	known	frame_shift_del	c.1881	p.P628fs	0.996	pfam_Inositol_phosphatase	pfam_Syja_N,pfam_Inositol_phosphatase,pfscan_Syja_N	-	no_errors	INPP5F	HGNC	ENSG00000198825				97	0	0	66	8	10.8108
CUZD1	0	genome.wustl.edu	37	10	124600721	124600722	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	124600721	124600722	-	T	INS	CUZD1	ENST00000368904	human	ensembl	74_37	-1	known	frame_shift_ins	c.206_205	p.S69fs	0.814:0.979	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_ZP_dom,pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,smart_ZP_dom,pfscan_CUB_dom,pfscan_ZP_dom,prints_ZP_dom	-	no_errors	CUZD1	HGNC	ENSG00000138161				102	0	0	88	14	13.7255
MKI67	0	genome.wustl.edu	37	10	129913974	129913974	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	129913974	129913974	T	-	DEL	MKI67	ENST00000368654	human	ensembl	74_37	-1	known	frame_shift_del	c.698	p.N233fs	0.003	NULL	pfam_K167R,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	MKI67	HGNC	ENSG00000148773				83	0	0	57	15	20.8333
EBF3	0	genome.wustl.edu	37	10	131666125	131666125	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	131666125	131666125	C	-	DEL	EBF3	ENST00000355311	human	ensembl	74_37	-1	known	frame_shift_del	c.833	p.G278fs	1.000	pfam_IPT,superfamily_Ig_E-set,smart_IPT	pfam_IPT,superfamily_Ig_E-set,smart_IPT	-	no_errors	EBF3	HGNC	ENSG00000108001				71	0	0	51	9	15
C10orf111	0	genome.wustl.edu	37	10	15138584	15138585	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	15138584	15138585	-	C	INS	C10orf111	ENST00000378207	human	ensembl	74_37	-1	known	frame_shift_ins	c.240_239	p.Q81fs	0.000:0.000	NULL	NULL	-	no_errors	C10orf111	HGNC	ENSG00000176236				142	0	0	115	19	14.1791
FAM171A1	0	genome.wustl.edu	37	10	15255494	15255494	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	15255494	15255494	C	-	DEL	FAM171A1	ENST00000378116	human	ensembl	74_37	-1	known	frame_shift_del	c.2093	p.G698fs	0.999	pfam_Uncharacterised_FAM171	pfam_Uncharacterised_FAM171	-	no_errors	FAM171A1	HGNC	ENSG00000148468				109	0	0	109	22	16.7939
CUBN	0	genome.wustl.edu	37	10	17113554	17113554	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	17113554	17113554	A	-	DEL	CUBN	ENST00000377833	human	ensembl	74_37	-1	known	frame_shift_del	c.2496	p.P833fs	0.996	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_CUB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_CUB_dom,pfscan_CUB_dom,pfscan_EG-like_dom	-	no_errors	CUBN	HGNC	ENSG00000107611				121	0	0	71	18	20.2247
CUBN	0	genome.wustl.edu	37	10	17171226	17171227	+	Frame_Shift_Ins	INS	-	-	CT			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	17171226	17171227	-	CT	INS	CUBN	ENST00000377833	human	ensembl	74_37	-1	known	frame_shift_ins	c.146_145	p.G49fs	1.000:1.000	NULL	pfam_CUB_dom,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_CUB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_CUB_dom,pfscan_CUB_dom,pfscan_EG-like_dom	-	no_errors	CUBN	HGNC	ENSG00000107611				135	0	0	74	18	19.5652
ST8SIA6	0	genome.wustl.edu	37	10	17363321	17363321	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	17363321	17363321	T	-	DEL	ST8SIA6	ENST00000377602	human	ensembl	74_37	-1	known	frame_shift_del	c.753	p.A252fs	0.024	pfam_Glyco_trans_29,pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST8SIA6	HGNC	ENSG00000148488				75	0	0	43	9	17.3077
PLXDC2	0	genome.wustl.edu	37	10	20357165	20357165	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	20357165	20357165	G	-	DEL	PLXDC2	ENST00000377252	human	ensembl	74_37	+1	known	frame_shift_del	c.538	p.G181fs	1.000	NULL	pfam_Plexin_repeat,superfamily_Plexin-like_fold,smart_Plexin-like_fold	-	no_errors	PLXDC2	HGNC	ENSG00000120594				65	0	0	51	10	16.3934
C10orf113	0	genome.wustl.edu	37	10	21435307	21435308	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	21435307	21435308	-	A	INS	C10orf113	ENST00000534331	human	ensembl	74_37	-1	known	frame_shift_ins	c.131_130	p.S44fs	0.010:0.000	NULL	NULL	-	no_errors	C10orf113	HGNC	ENSG00000204683				126	0	0	91	9	9
ANKRD26	0	genome.wustl.edu	37	10	27337805	27337806	+	In_Frame_Ins	INS	-	-	CAT			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	27337805	27337806	-	CAT	INS	ANKRD26	ENST00000436985	human	ensembl	74_37	-1	known	in_frame_ins	c.1787_1786	p.596in_frame_insD	0.005:0.004	NULL	pfam_DUF3496,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_Polyketide_synth_docking,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD26	HGNC	ENSG00000107890				95	0	0	51	14	21.5385
MASTL	0	genome.wustl.edu	37	10	27459272	27459272	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	27459272	27459272	A	-	DEL	MASTL	ENST00000375940	human	ensembl	74_37	+1	known	frame_shift_del	c.1384	p.T464fs	1.000	superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MASTL	HGNC	ENSG00000120539				60	0	0	44	10	18.5185
PTCHD3	0	genome.wustl.edu	37	10	27687763	27687763	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	27687763	27687763	A	-	DEL	PTCHD3	ENST00000438700	human	ensembl	74_37	-1	known	frame_shift_del	c.1764	p.F588fs	0.992	pfam_Patched	pfam_Patched,pfscan_SSD	-	no_errors	PTCHD3	HGNC	ENSG00000182077				72	0	0	53	10	15.873
PTCHD3	0	genome.wustl.edu	37	10	27702950	27702951	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	27702950	27702951	-	G	INS	PTCHD3	ENST00000438700	human	ensembl	74_37	-1	known	frame_shift_ins	c.230_229	p.R77fs	0.000:0.000	NULL	pfam_Patched,pfscan_SSD	-	no_errors	PTCHD3	HGNC	ENSG00000182077				43	0	0	52	11	17.4603
PFKP	0	genome.wustl.edu	37	10	3172105	3172106	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	3172105	3172106	-	G	INS	PFKP	ENST00000381125	human	ensembl	74_37	+1	known	frame_shift_ins	c.1778_1779	p.L596fs	1.000:1.000	pfam_Phosphofructokinase_dom,superfamily_Phosphofructokinase_dom,pirsf_6-phosphofructokinase_euk,tigrfam_6-phosphofructokinase_euk	pfam_Phosphofructokinase_dom,superfamily_Phosphofructokinase_dom,pirsf_6-phosphofructokinase_euk,prints_Phosphofructokinase,tigrfam_6-phosphofructokinase_euk	-	no_errors	PFKP	HGNC	ENSG00000067057				71	0	0	65	13	16.6667
PITRM1	0	genome.wustl.edu	37	10	3200265	3200266	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	3200265	3200266	-	T	INS	PITRM1	ENST00000380989	human	ensembl	74_37	-1	known	frame_shift_ins	c.1217_1216	p.S406fs	0.034:0.042	pfam_Peptidase_M16_C,superfamily_Metalloenz_LuxS/M16	pfam_Peptidase_M16C_assoc,pfam_Peptidase_M16_C,pfam_Pept_M16_N,superfamily_Metalloenz_LuxS/M16	-	no_errors	PITRM1	HGNC	ENSG00000107959				73	0	0	65	10	13.3333
KIF5B	0	genome.wustl.edu	37	10	32323676	32323677	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	32323676	32323677	-	T	INS	KIF5B	ENST00000302418	human	ensembl	74_37	-1	known	frame_shift_ins	c.1053_1052	p.N351fs	1.000:1.000	superfamily_P-loop_NTPase	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF5B	HGNC	ENSG00000170759				108	0	0	77	5	6.09756
PARD3	0	genome.wustl.edu	37	10	34671501	34671501	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	34671501	34671501	T	-	DEL	PARD3	ENST00000374789	human	ensembl	74_37	-1	known	frame_shift_del	c.1366	p.I456fs	0.956	superfamily_PDZ	pfam_DUF3534,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PARD3	HGNC	ENSG00000148498				137	0	0	120	7	5.51181
ZNF37A	0	genome.wustl.edu	37	10	38406967	38406967	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	38406967	38406967	A	-	DEL	ZNF37A	ENST00000351773	human	ensembl	74_37	+1	known	frame_shift_del	c.888	p.K297fs	0.714	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF37A	HGNC	ENSG00000075407				133	0	0	91	9	9
BMS1	0	genome.wustl.edu	37	10	43280948	43280948	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	43280948	43280948	A	-	DEL	BMS1	ENST00000374518	human	ensembl	74_37	+1	known	frame_shift_del	c.195	p.K67fs	0.891	NULL	pfam_BMS1_TSR1_C,pfam_AARP2CN,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_AARP2CN	-	no_errors	BMS1	HGNC	ENSG00000165733				124	0	0	83	19	18.6275
ALOX5	0	genome.wustl.edu	37	10	45941070	45941072	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	45941070	45941072	AAG	-	DEL	ALOX5	ENST00000374391	human	ensembl	74_37	+1	known	in_frame_del	c.1960_1962	p.K656in_frame_del	1.000:1.000:1.000	pfam_LipOase_C,superfamily_LipOase_C	pfam_LipOase_C,pfam_PLAT/LH2_dom,superfamily_LipOase_C,superfamily_Lipase_LipOase,smart_PLAT/LH2_dom,prints_LipOase_mml,prints_LipOase_C,pfscan_PLAT/LH2_dom	-	no_errors	ALOX5	HGNC	ENSG00000012779				113	0	0	99	14	12.3894
NPY4R	0	genome.wustl.edu	37	10	47087814	47087814	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	47087814	47087814	C	-	DEL	NPY4R	ENST00000374312	human	ensembl	74_37	+1	known	frame_shift_del	c.1031	p.L346fs	0.001	prints_NPY4_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_NPY4_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	NPY4R	HGNC	ENSG00000204174				124	0	0	103	16	13.4454
RTKN2	0	genome.wustl.edu	37	10	63958149	63958149	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	63958149	63958149	T	-	DEL	RTKN2	ENST00000373789	human	ensembl	74_37	-1	known	frame_shift_del	c.1348	p.I450fs	1.000	NULL	pfam_Pleckstrin_homology,superfamily_HR1_rho-bd,smart_HR1_rho-bd,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	RTKN2	HGNC	ENSG00000182010				131	0	0	58	17	22.6667
MYPN	0	genome.wustl.edu	37	10	69961687	69961687	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	69961687	69961687	C	-	DEL	MYPN	ENST00000358913	human	ensembl	74_37	+1	known	frame_shift_del	c.3595	p.P1200fs	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	MYPN	HGNC	ENSG00000138347				123	0	0	105	8	7.07965
TET1	0	genome.wustl.edu	37	10	70332152	70332153	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	70332152	70332153	-	A	INS	TET1	ENST00000373644	human	ensembl	74_37	+1	known	frame_shift_ins	c.57_58	p.K22fs	0.811:0.855	NULL	pfam_Znf_CXXC,pfscan_Znf_CXXC	-	no_errors	TET1	HGNC	ENSG00000138336				57	0	0	41	5	10.8696
ZSWIM8	0	genome.wustl.edu	37	10	75560464	75560464	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	75560464	75560464	C	-	DEL	ZSWIM8	ENST00000398706	human	ensembl	74_37	+1	known	frame_shift_del	c.5093	p.Y1701fs	1.000	NULL	pfscan_Znf_SWIM	-	no_errors	ZSWIM8	HGNC	ENSG00000214655				86	0	0	67	21	23.8636
KAT6B	0	genome.wustl.edu	37	10	76735770	76735770	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	76735770	76735770	A	-	DEL	KAT6B	ENST00000287239	human	ensembl	74_37	+1	known	frame_shift_del	c.1675	p.K560fs	1.000	NULL	pfam_MOZ_SAS,pfam_Znf_PHD-finger,pfam_Histone_H1/H5_H15,superfamily_Acyl_CoA_acyltransferase,superfamily_Znf_FYVE_PHD,smart_Histone_H1/H5_H15,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	KAT6B	HGNC	ENSG00000156650				105	0	0	94	21	18.2609
MBL1P	0	genome.wustl.edu	37	10	81680656	81680656	+	RNA	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	81680656	81680656	A	-	DEL	MBL1P	ENST00000480805	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	MBL1P	HGNC	ENSG00000242600				9	0	0	0	8	100
PTEN	0	genome.wustl.edu	37	10	89653796	89653798	+	In_Frame_Del	DEL	ATT	ATT	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	ATT	ATT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	89653796	89653798	ATT	-	DEL	PTEN	ENST00000371953	human	ensembl	74_37	+1	known	in_frame_del	c.94_96	p.I33in_frame_del	1.000:1.000:1.000	smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Phosphatase_tensin-typ	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_C2_dom,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	PTEN	HGNC	ENSG00000171862				119	0	0	65	8	10.9589
PTEN	0	genome.wustl.edu	37	10	89720812	89720812	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	89720812	89720812	A	-	DEL	PTEN	ENST00000371953	human	ensembl	74_37	+1	known	frame_shift_del	c.963	p.N323fs	1.000	pfam_Tensin_phosphatase_C2-dom,superfamily_C2_dom,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tensin_phosphatase_C2-dom	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_C2_dom,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	PTEN	HGNC	ENSG00000171862				189	0	0	93	22	19.1304
STAMBPL1	0	genome.wustl.edu	37	10	90682146	90682146	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	90682146	90682146	A	-	DEL	STAMBPL1	ENST00000371927	human	ensembl	74_37	+1	known	frame_shift_del	c.1207	p.K405fs	1.000	NULL	pfam_JAB_MPN_dom,smart_JAB_MPN_dom	-	no_errors	STAMBPL1	HGNC	ENSG00000138134				119	0	0	74	10	11.9048
CC2D2B	0	genome.wustl.edu	37	10	97772379	97772380	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	97772379	97772380	-	T	INS	CC2D2B	ENST00000410012	human	ensembl	74_37	+1	known	frame_shift_ins	c.211_212	p.N73fs	1.000:1.000	NULL	NULL	-	no_errors	CC2D2B	HGNC	ENSG00000188649				119	0	0	93	5	5.10204
C10orf12	0	genome.wustl.edu	37	10	98742635	98742636	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	10	98742635	98742636	-	A	INS	C10orf12	ENST00000286067	human	ensembl	74_37	+1	known	frame_shift_ins	c.1488_1489	p.F498fs	0.065:0.968	NULL	NULL	-	no_errors	C10orf12	HGNC	ENSG00000155640				117	0	0	84	15	15.1515
TRPC6	0	genome.wustl.edu	37	11	101324444	101324444	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	101324444	101324444	T	-	DEL	TRPC6	ENST00000344327	human	ensembl	74_37	-1	known	frame_shift_del	c.2581	p.R861fs	1.000	superfamily_ARM-type_fold,tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,pfam_PKD1_2_channel,superfamily_Ankyrin_rpt-contain_dom,superfamily_ARM-type_fold,smart_Ankyrin_rpt,prints_TRPC6_channel,prints_TRPC_channel,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,tigrfam_TRP_channel	-	no_errors	TRPC6	HGNC	ENSG00000137672				86	0	0	77	13	14.4444
MUC6	0	genome.wustl.edu	37	11	1016000	1016001	+	Frame_Shift_Ins	INS	-	-	TGAGA			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	1016000	1016001	-	TGAGA	INS	MUC6	ENST00000421673	human	ensembl	74_37	-1	known	frame_shift_ins	c.6801_6800	p.Q2267fs	0.016:0.021	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_Cys_knot_C,pfscan_Cys_knot_C	-	no_errors	MUC6	HGNC	ENSG00000184956				252	0	0	212	24	10.1695
CASP5	0	genome.wustl.edu	37	11	104879687	104879688	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	104879687	104879688	-	G	INS	CASP5	ENST00000393141	human	ensembl	74_37	-1	known	frame_shift_ins	c.67_66	p.R22fs	0.000:0.000	NULL	pfam_Pept_C14_caspase,pfam_CARD,superfamily_DEATH-like_dom,smart_CARD,smart_Pept_C14A_p45_core,pirsf_Caspase_IL-1_beta,pfscan_CARD,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20,prints_Pept_C14A_p45_core	-	no_errors	CASP5	HGNC	ENSG00000137757				88	0	0	66	10	13.1579
ATM	0	genome.wustl.edu	37	11	108159797	108159797	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	108159797	108159797	A	-	DEL	ATM	ENST00000278616	human	ensembl	74_37	+1	known	frame_shift_del	c.4203	p.S1403fs	0.201	superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_TAN,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATM	HGNC	ENSG00000149311				82	0	0	42	12	22.2222
ATM	0	genome.wustl.edu	37	11	108164163	108164164	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	108164163	108164164	-	A	INS	ATM	ENST00000278616	human	ensembl	74_37	+1	known	frame_shift_ins	c.4735_4736	p.I1581fs	1.000:1.000	superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_TAN,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATM	HGNC	ENSG00000149311				261	0	0	172	14	7.52688
DDX10	0	genome.wustl.edu	37	11	108709229	108709229	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	108709229	108709229	A	-	DEL	DDX10	ENST00000322536	human	ensembl	74_37	+1	known	frame_shift_del	c.2022	p.V677fs	1.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX10	HGNC	ENSG00000178105				198	0	0	111	14	11.2
DLAT	0	genome.wustl.edu	37	11	111904183	111904183	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	111904183	111904183	A	-	DEL	DLAT	ENST00000280346	human	ensembl	74_37	+1	known	frame_shift_del	c.716	p.V242fs	1.000	pfam_Biotin_lipoyl,superfamily_Single_hybrid_motif,pfscan_Biotin_lipoyl,tigrfam_LAT1	pfam_2-oxoacid_DH_actylTfrase,pfam_Biotin_lipoyl,pfam_E3-bd,superfamily_Single_hybrid_motif,superfamily_E3-bd,pfscan_Biotin_lipoyl,tigrfam_LAT1	-	no_errors	DLAT	HGNC	ENSG00000150768				98	0	0	60	10	14.2857
C11orf57	0	genome.wustl.edu	37	11	111953289	111953289	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	111953289	111953289	A	-	DEL	C11orf57	ENST00000393047	human	ensembl	74_37	+1	known	frame_shift_del	c.475	p.K161fs	1.000	NULL	NULL	-	no_errors	C11orf57	HGNC	ENSG00000150776				71	0	0	33	28	45.9016
NNMT	0	genome.wustl.edu	37	11	114183046	114183046	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	114183046	114183046	C	-	DEL	NNMT	ENST00000299964	human	ensembl	74_37	+1	known	frame_shift_del	c.642	p.L216fs	0.427	pfam_NNMT_TEMT_trans,pirsf_NNMT_TEMT_trans	pfam_NNMT_TEMT_trans,pirsf_NNMT_TEMT_trans	-	no_errors	NNMT	HGNC	ENSG00000166741				103	0	0	82	9	9.89011
CEP164	0	genome.wustl.edu	37	11	117280511	117280511	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	117280511	117280511	C	-	DEL	CEP164	ENST00000278935	human	ensembl	74_37	+1	known	frame_shift_del	c.3926	p.T1311fs	0.000	NULL	superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom	-	no_errors	CEP164	HGNC	ENSG00000110274				145	0	0	150	11	6.8323
KMT2A	0	genome.wustl.edu	37	11	118373611	118373611	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	118373611	118373611	C	-	DEL	KMT2A	ENST00000389506	human	ensembl	74_37	+1	known	frame_shift_del	c.6995	p.P2333fs	0.037	pirsf_MeTrfase_trithorax	pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_Bromodomain,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pirsf_MeTrfase_trithorax,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC,pfscan_Bromodomain	-	no_errors	KMT2A	HGNC	ENSG00000118058				249	0	0	225	15	6.25
MFRP	0	genome.wustl.edu	37	11	119213688	119213688	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	119213688	119213688	G	-	DEL	MFRP	ENST00000449574	human	ensembl	74_37	-1	known	frame_shift_del	c.1150	p.H384fs	0.000	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_Frizzled_dom,pfam_LDrepeatLR_classA_rpt,superfamily_CUB_dom,superfamily_Frizzled_dom,superfamily_LDrepeatLR_classA_rpt,smart_CUB_dom,smart_LDrepeatLR_classA_rpt,smart_Frizzled_dom,pfscan_CUB_dom,pfscan_Frizzled_dom,pfscan_LDrepeatLR_classA_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	MFRP	HGNC	ENSG00000235718				19	0	0	10	3	23.0769
NCAPD3	0	genome.wustl.edu	37	11	134048586	134048586	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	134048586	134048586	G	-	DEL	NCAPD3	ENST00000534548	human	ensembl	74_37	-1	known	frame_shift_del	c.2725	p.Q909fs	1.000	superfamily_ARM-type_fold,pirsf_NCAPD3	superfamily_ARM-type_fold,pirsf_NCAPD3	-	no_errors	NCAPD3	HGNC	ENSG00000151503				124	1	0.8	89	6	6.31579
GLB1L2	0	genome.wustl.edu	37	11	134226203	134226204	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	134226203	134226204	-	G	INS	GLB1L2	ENST00000339772	human	ensembl	74_37	+1	known	frame_shift_ins	c.567_568	p.P191fs	0.106:0.800	pfam_Glycoside_Hdrlase_35,pfam_Glyco_hydro_42_N,superfamily_Glycoside_hydrolase_SF,prints_Glycoside_Hdrlase_35	pfam_Glycoside_Hdrlase_35,pfam_Glyco_hydro_42_N,superfamily_Glycoside_hydrolase_SF,superfamily_Galactose-bd-like,prints_Glycoside_Hdrlase_35	-	no_errors	GLB1L2	HGNC	ENSG00000149328				263	0	0	223	15	6.30252
GLB1L2	0	genome.wustl.edu	37	11	134244918	134244918	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	134244918	134244918	C	-	DEL	GLB1L2	ENST00000339772	human	ensembl	74_37	+1	known	frame_shift_del	c.1877	p.H628fs	0.018	NULL	pfam_Glycoside_Hdrlase_35,pfam_Glyco_hydro_42_N,superfamily_Glycoside_hydrolase_SF,superfamily_Galactose-bd-like,prints_Glycoside_Hdrlase_35	-	no_errors	GLB1L2	HGNC	ENSG00000149328				23	0	0	20	7	25.9259
SOX6	0	genome.wustl.edu	37	11	16010610	16010611	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	16010610	16010611	-	T	INS	SOX6	ENST00000352083	human	ensembl	74_37	-1	known	frame_shift_ins	c.1899_1898	p.D634fs	1.000:1.000	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	SOX6	HGNC	ENSG00000110693				275	0	0	233	18	7.17131
CTSD	0	genome.wustl.edu	37	11	1780829	1780830	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	1780829	1780830	-	G	INS	CTSD	ENST00000236671	human	ensembl	74_37	-1	known	frame_shift_ins	c.269_268	p.Q90fs	1.000:0.999	pfam_Aspartic_peptidase,superfamily_Peptidase_aspartic_dom,prints_Aspartic_peptidase	pfam_Aspartic_peptidase,pfam_Aspartic_peptidase_N,superfamily_Peptidase_aspartic_dom,prints_Aspartic_peptidase	-	no_errors	CTSD	HGNC	ENSG00000117984				56	0	0	46	9	16.3636
NAV2	0	genome.wustl.edu	37	11	19970371	19970371	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	19970371	19970371	C	-	DEL	NAV2	ENST00000396087	human	ensembl	74_37	+1	known	frame_shift_del	c.2459	p.S822fs	1.000	NULL	pfam_CH-domain,superfamily_CH-domain,superfamily_P-loop_NTPase,smart_CH-domain,smart_AAA+_ATPase,pfscan_CH-domain	-	no_errors	NAV2	HGNC	ENSG00000166833				59	0	0	55	7	11.2903
SLC6A5	0	genome.wustl.edu	37	11	20625905	20625906	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	20625905	20625906	-	G	INS	SLC6A5	ENST00000525748	human	ensembl	74_37	+1	known	frame_shift_ins	c.614_615	p.Y207fs	1.000:1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	-	no_errors	SLC6A5	HGNC	ENSG00000165970				134	0	0	133	9	6.33803
RPL26P30	0	genome.wustl.edu	37	11	2356628	2356628	+	RNA	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	2356628	2356628	T	-	DEL	RPL26P30	ENST00000602923	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RPL26P30	HGNC	ENSG00000236264				130	0	0	93	28	23.1405
LUZP2	0	genome.wustl.edu	37	11	25100135	25100136	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	25100135	25100136	-	A	INS	LUZP2	ENST00000336930	human	ensembl	74_37	+1	known	frame_shift_ins	c.972_973	p.A326fs	0.000:0.006	NULL	NULL	-	no_errors	LUZP2	HGNC	ENSG00000187398				145	0	0	100	6	5.66038
DNAJC24	0	genome.wustl.edu	37	11	31436468	31436468	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	31436468	31436468	A	-	DEL	DNAJC24	ENST00000465995	human	ensembl	74_37	+1	known	frame_shift_del	c.222	p.R76fs	0.617	pfam_DnaJ_domain,superfamily_DnaJ_domain,pfscan_DnaJ_domain	pfam_DnaJ_domain,pfam_Znf_DHP,superfamily_DnaJ_domain,smart_DnaJ_domain,pfscan_Znf_DHP,pfscan_DnaJ_domain,prints_DnaJ_domain	-	no_errors	DNAJC24	HGNC	ENSG00000170946				44	0	0	28	9	24.3243
CCDC73	0	genome.wustl.edu	37	11	32635181	32635181	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	32635181	32635181	T	-	DEL	CCDC73	ENST00000335185	human	ensembl	74_37	-1	known	frame_shift_del	c.2683	p.T895fs	1.000	NULL	NULL	-	no_errors	CCDC73	HGNC	ENSG00000186714				222	1	0.44843	133	35	20.8333
CSTF3	0	genome.wustl.edu	37	11	33124702	33124703	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	33124702	33124703	-	T	INS	CSTF3	ENST00000323959	human	ensembl	74_37	-1	known	frame_shift_ins	c.614_613	p.M205fs	1.000:1.000	NULL	pfam_Suf,smart_HAT	-	no_errors	CSTF3	HGNC	ENSG00000176102				85	0	0	58	9	13.4328
PDHX	0	genome.wustl.edu	37	11	34988311	34988311	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	34988311	34988311	C	-	DEL	PDHX	ENST00000227868	human	ensembl	74_37	+1	known	frame_shift_del	c.766	p.R257fs	0.990	NULL	pfam_2-oxoacid_DH_actylTfrase,pfam_Biotin_lipoyl,pfam_E3-bd,superfamily_Single_hybrid_motif,superfamily_E3-bd,pfscan_Biotin_lipoyl	-	no_errors	PDHX	HGNC	ENSG00000110435				101	0	0	98	16	14.0351
ART1	0	genome.wustl.edu	37	11	3681478	3681478	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	3681478	3681478	C	-	DEL	ART1	ENST00000250693	human	ensembl	74_37	+1	known	frame_shift_del	c.729	p.F246fs	0.999	pfam_ART,prints_ART	pfam_ART,prints_ART	-	no_errors	ART1	HGNC	ENSG00000129744				81	0	0	58	16	21.6216
OR52K1	0	genome.wustl.edu	37	11	4510704	4510704	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	4510704	4510704	G	-	DEL	OR52K1	ENST00000307632	human	ensembl	74_37	+1	known	frame_shift_del	c.574	p.D193fs	0.999	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR52K1	HGNC	ENSG00000196778				161	0	0	124	21	14.4828
PRDM11	0	genome.wustl.edu	37	11	45204460	45204461	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	45204460	45204461	-	C	INS	PRDM11	ENST00000263765	human	ensembl	74_37	+1	known	frame_shift_ins	c.374_375	p.V128fs	1.000:0.921	NULL	pfscan_SET_dom	-	no_errors	PRDM11	HGNC	ENSG00000019485				92	0	0	96	12	11.1111
GYLTL1B	0	genome.wustl.edu	37	11	45948373	45948373	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	45948373	45948373	C	-	DEL	GYLTL1B	ENST00000325468	human	ensembl	74_37	+1	known	frame_shift_del	c.1276	p.R428fs	0.023	NULL	pfam_Glyco_trans_8	-	no_errors	GYLTL1B	HGNC	ENSG00000165905				50	0	0	35	7	16.6667
OR51E1	0	genome.wustl.edu	37	11	4674217	4674217	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	4674217	4674217	G	-	DEL	OR51E1	ENST00000396952	human	ensembl	74_37	+1	known	frame_shift_del	c.461	p.A156fs	0.966	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR51E1	HGNC	ENSG00000180785				112	0	0	105	20	16
OR4C12	0	genome.wustl.edu	37	11	50003722	50003723	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	50003722	50003723	-	A	INS	OR4C12	ENST00000335238	human	ensembl	74_37	-1	known	frame_shift_ins	c.316_315	p.G105fs	0.960:0.958	pfam_GPCR_Rhodpsn,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR4C12	HGNC	ENSG00000221954				241	0	0	166	12	6.74157
TRIM51HP	0	genome.wustl.edu	37	11	55065032	55065032	+	RNA	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	55065032	55065032	T	-	DEL	TRIM51HP	ENST00000526016	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.010	-	-	-	no_errors	TRIM51HP	HGNC	ENSG00000166007				59	0	0	42	7	14.2857
OR5D14	0	genome.wustl.edu	37	11	55563619	55563619	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	55563619	55563619	C	-	DEL	OR5D14	ENST00000335605	human	ensembl	74_37	+1	known	frame_shift_del	c.588	p.H198fs	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5D14	HGNC	ENSG00000186113				235	0	0	170	39	18.6603
OR8I2	0	genome.wustl.edu	37	11	55861308	55861308	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	55861308	55861308	T	-	DEL	OR8I2	ENST00000302124	human	ensembl	74_37	+1	known	frame_shift_del	c.525	p.C178fs	0.881	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8I2	HGNC	ENSG00000172154				163	0	0	127	33	20.625
OR8J3	0	genome.wustl.edu	37	11	55904662	55904663	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	55904662	55904663	-	A	INS	OR8J3	ENST00000301529	human	ensembl	74_37	-1	known	frame_shift_ins	c.533_532	p.Y178fs	0.130:0.125	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8J3	HGNC	ENSG00000167822				137	0	0	85	6	6.59341
OR5M3	0	genome.wustl.edu	37	11	56237709	56237709	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	56237709	56237709	T	-	DEL	OR5M3	ENST00000312240	human	ensembl	74_37	-1	known	frame_shift_del	c.265	p.T89fs	0.002	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5M3	HGNC	ENSG00000174937				88	0	0	64	8	11.1111
TRIM5	0	genome.wustl.edu	37	11	5687267	5687267	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	5687267	5687267	T	-	DEL	TRIM5	ENST00000305836	human	ensembl	74_37	-1	known	frame_shift_del	c.812	p.N271fs	0.000	NULL	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM5	HGNC	ENSG00000132256				127	0	0	67	18	21.1765
ZDHHC5	0	genome.wustl.edu	37	11	57466855	57466857	+	In_Frame_Del	DEL	AGA	AGA	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	57466855	57466857	AGA	-	DEL	ZDHHC5	ENST00000287169	human	ensembl	74_37	+1	known	in_frame_del	c.1947_1949	p.E651in_frame_del	0.122:0.994:1.000	NULL	pfam_Znf_DHHC_palmitoyltrfase,superfamily_Plexin-like_fold,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC5	HGNC	ENSG00000156599				95	0	0	64	15	18.9873
FAM111B	0	genome.wustl.edu	37	11	58893474	58893477	+	Frame_Shift_Del	DEL	ACAC	ACAC	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	ACAC	ACAC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	58893474	58893477	ACAC	-	DEL	FAM111B	ENST00000343597	human	ensembl	74_37	+1	known	frame_shift_del	c.1904_1907	p.H637fs	0.000:0.000:0.000:0.000	superfamily_Trypsin-like_Pept_dom	superfamily_Trypsin-like_Pept_dom	-	no_errors	FAM111B	HGNC	ENSG00000189057				87	0	0	84	9	9.67742
SLC22A6	0	genome.wustl.edu	37	11	62749334	62749334	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	62749334	62749334	A	-	DEL	SLC22A6	ENST00000377871	human	ensembl	74_37	-1	known	frame_shift_del	c.777	p.F259fs	0.986	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	-	no_errors	SLC22A6	HGNC	ENSG00000197901				24	0	0	21	6	22.2222
CCKBR	0	genome.wustl.edu	37	11	6292586	6292587	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	6292586	6292587	-	C	INS	CCKBR	ENST00000525462	human	ensembl	74_37	+1	known	frame_shift_ins	c.1364_1365	p.L457fs	1.000:1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_NPY_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Gastrin_rcpt,prints_Cholcskin_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	CCKBR	HGNC	ENSG00000110148				85	0	0	106	8	7.01754
RARRES3	0	genome.wustl.edu	37	11	63313709	63313709	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	63313709	63313709	A	-	DEL	RARRES3	ENST00000255688	human	ensembl	74_37	+1	known	frame_shift_del	c.476	p.A162fs	0.001	NULL	pfam_LRAT-like_dom	-	no_errors	RARRES3	HGNC	ENSG00000133321				191	0	0	145	15	9.375
ATL3	0	genome.wustl.edu	37	11	63411656	63411657	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	63411656	63411657	-	A	INS	ATL3	ENST00000332645	human	ensembl	74_37	-1	known	frame_shift_ins	c.777_776	p.L259fs	1.000:1.000	pfam_Guanylate-bd_N,superfamily_P-loop_NTPase	pfam_Guanylate-bd_N,pfam_Guanylate-bd_C,superfamily_Guanylate-bd_C,superfamily_P-loop_NTPase	-	no_errors	ATL3	HGNC	ENSG00000184743				184	0	0	150	12	7.40741
VEGFB	0	genome.wustl.edu	37	11	64004663	64004663	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	64004663	64004663	A	-	DEL	VEGFB	ENST00000309422	human	ensembl	74_37	+1	known	frame_shift_del	c.379	p.K129fs	1.000	pfscan_PDGF/VEGF_dom	pfam_PDGF/VEGF_dom,smart_PDGF/VEGF_dom,pfscan_PDGF/VEGF_dom	-	no_errors	VEGFB	HGNC	ENSG00000173511				139	0	0	103	21	16.9355
RASGRP2	0	genome.wustl.edu	37	11	64508388	64508388	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	64508388	64508388	C	-	DEL	RASGRP2	ENST00000377486	human	ensembl	74_37	-1	putative	frame_shift_del	c.403	p.A135fs	0.001	NULL	pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGRP2	HGNC	ENSG00000068831				47	0	0	32	8	20
PYGM	0	genome.wustl.edu	37	11	64525745	64525745	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	64525745	64525745	A	-	DEL	PYGM	ENST00000164139	human	ensembl	74_37	-1	known	frame_shift_del	c.501	p.F167fs	1.000	pfam_Glyco_trans_35,pirsf_Glyco_trans_35,tigrfam_Glycg_phsphrylas	pfam_Glyco_trans_35,pirsf_Glyco_trans_35,tigrfam_Glycg_phsphrylas	-	no_errors	PYGM	HGNC	ENSG00000068976				150	0	0	135	13	8.78378
SNX15	0	genome.wustl.edu	37	11	64802996	64802996	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	64802996	64802996	C	-	DEL	SNX15	ENST00000377244	human	ensembl	74_37	+1	known	frame_shift_del	c.525	p.P177fs	0.044	NULL	pfam_MIT,pfam_Phox,superfamily_Phox,smart_Phox,smart_MIT,pfscan_Phox	-	no_errors	SNX15	HGNC	ENSG00000110025				199	0	0	193	35	15.3509
FIBP	0	genome.wustl.edu	37	11	65653077	65653077	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	65653077	65653077	T	-	DEL	FIBP	ENST00000338369	human	ensembl	74_37	-1	known	frame_shift_del	c.570	p.K190fs	1.000	pfam_FIBP	pfam_FIBP	-	no_errors	FIBP	HGNC	ENSG00000172500				155	0	0	141	10	6.62252
MRPL17	0	genome.wustl.edu	37	11	6703476	6703481	+	In_Frame_Del	DEL	GGCAGG	GGCAGG	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	GGCAGG	GGCAGG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	6703476	6703481	GGCAGG	-	DEL	MRPL17	ENST00000288937	human	ensembl	74_37	-1	known	in_frame_del	c.401_396	p.LP135in_frame_del	0.797:0.820:0.833:1.000:1.000:0.994	NULL	pfam_Ribosomal_L17,superfamily_Ribosomal_L17,tigrfam_Ribosomal_L17	-	no_errors	MRPL17	HGNC	ENSG00000158042				116	0	0	87	13	13
NADSYN1	0	genome.wustl.edu	37	11	71192428	71192429	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	71192428	71192429	-	T	INS	NADSYN1	ENST00000319023	human	ensembl	74_37	+1	known	frame_shift_ins	c.1025_1026	p.L344fs	0.996:0.280	pfam_NAD/GMP_synthase,pirsf_Gln-dep_NAD_synthase,tigrfam_NAD_synthase	pfam_C-N_Hydrolase,pfam_NAD/GMP_synthase,superfamily_C-N_Hydrolase,pirsf_Gln-dep_NAD_synthase,pfscan_C-N_Hydrolase,tigrfam_NAD_synthase	-	no_errors	NADSYN1	HGNC	ENSG00000172890				179	0	0	126	9	6.66667
ENSG00000255157	0	genome.wustl.edu	37	11	71574635	71574635	+	RNA	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	71574635	71574635	A	-	DEL	ENSG00000255157	ENST00000528518	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CTD-2313N18.8	Clone_based_vega_gene	ENSG00000255157				320	1	0.311526	242	13	5.09804
INPPL1	0	genome.wustl.edu	37	11	71946764	71946764	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	71946764	71946764	C	-	DEL	INPPL1	ENST00000298229	human	ensembl	74_37	+1	known	frame_shift_del	c.2705	p.S904fs	0.501	NULL	pfam_Endo/exonuclease/phosphatase,pfam_SH2,pfam_SAM_2,pfam_SAM_type1,superfamily_Endo/exonuclease/phosphatase,superfamily_SAM/pointed,smart_SH2,smart_IPPc,smart_SAM,pfscan_SAM,pfscan_SH2,prints_SH2	-	no_errors	INPPL1	HGNC	ENSG00000165458				87	0	0	73	9	10.9756
PRKRIR	0	genome.wustl.edu	37	11	76062235	76062235	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	76062235	76062235	C	-	DEL	PRKRIR	ENST00000260045	human	ensembl	74_37	-1	known	frame_shift_del	c.1959	p.D655fs	0.964	pfam_HATC_dom_C,superfamily_RNaseH-like_dom	pfam_Znf_C2CH,pfam_HATC_dom_C,superfamily_RNaseH-like_dom,smart_Znf_C2CH,pfscan_Znf_C2CH	-	no_errors	PRKRIR	HGNC	ENSG00000137492				182	0	0	168	9	5.08475
OVCH2	0	genome.wustl.edu	37	11	7718081	7718081	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	7718081	7718081	A	-	DEL	OVCH2	ENST00000454689	human	ensembl	74_37	-1	known	frame_shift_del	c.1072	p.S358fs	0.204	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_Peptidase_S1,pfam_CUB_dom,superfamily_Trypsin-like_Pept_dom,superfamily_CUB_dom,smart_Peptidase_S1,smart_CUB_dom,pfscan_CUB_dom,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	OVCH2	HGNC	ENSG00000183378				84	0	0	85	6	6.59341
AQP11	0	genome.wustl.edu	37	11	77301286	77301288	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	77301286	77301288	CTT	-	DEL	AQP11	ENST00000313578	human	ensembl	74_37	+1	known	in_frame_del	c.249_251	p.F85in_frame_del	1.000:1.000:1.000	pfam_MIP,superfamily_Aquaporin-like,pirsf_Aquaporin_11/12	pfam_MIP,superfamily_Aquaporin-like,pirsf_Aquaporin_11/12,prints_Aquaporin_11,prints_MIP	-	no_errors	AQP11	HGNC	ENSG00000178301				51	0	0	49	9	15.5172
USP35	0	genome.wustl.edu	37	11	77911710	77911710	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	77911710	77911710	C	-	DEL	USP35	ENST00000529308	human	ensembl	74_37	+1	known	frame_shift_del	c.1053	p.M354fs	0.969	superfamily_ARM-type_fold	pfam_Peptidase_C19/C67,superfamily_ARM-type_fold,pfscan_Peptidase_C19/C67	-	no_errors	USP35	HGNC	ENSG00000118369				23	0	0	26	6	18.75
NLRP10	0	genome.wustl.edu	37	11	7981836	7981836	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	7981836	7981836	G	-	DEL	NLRP10	ENST00000328600	human	ensembl	74_37	-1	known	frame_shift_del	c.1323	p.R442fs	0.000	NULL	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP10	HGNC	ENSG00000182261				167	0	0	162	13	7.42857
CCDC81	0	genome.wustl.edu	37	11	86097108	86097108	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	86097108	86097108	G	-	DEL	CCDC81	ENST00000445632	human	ensembl	74_37	+1	known	frame_shift_del	c.95	p.N34fs	1.000	superfamily_IHF-like_DNA-bd_dom	superfamily_IHF-like_DNA-bd_dom	-	no_errors	CCDC81	HGNC	ENSG00000149201				71	0	0	48	8	14.2857
DENND5A	0	genome.wustl.edu	37	11	9225449	9225449	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	9225449	9225449	G	-	DEL	DENND5A	ENST00000328194	human	ensembl	74_37	-1	known	frame_shift_del	c.707	p.P236fs	1.000	pfam_DENN_dom,smart_DENN_dom,pfscan_DENN_dom	pfam_DENN_dom,pfam_Run,pfam_uDENN_dom,pfam_dDENN_dom,pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,smart_Run,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_PLAT/LH2_dom,pfscan_Run	-	no_errors	DENND5A	HGNC	ENSG00000184014				52	0	0	57	12	17.3913
AMOTL1	0	genome.wustl.edu	37	11	94597954	94597956	+	In_Frame_Del	DEL	GGA	GGA	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	GGA	GGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	11	94597954	94597956	GGA	-	DEL	AMOTL1	ENST00000433060	human	ensembl	74_37	+1	known	in_frame_del	c.2190_2192	p.E731in_frame_del	1.000:1.000:1.000	pfam_Angiomotin_C	pfam_Angiomotin_C,prints_Angiomotin	-	no_errors	AMOTL1	HGNC	ENSG00000166025				125	0	0	103	14	11.9658
ANO4	0	genome.wustl.edu	37	12	101295596	101295596	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	101295596	101295596	A	-	DEL	ANO4	ENST00000392977	human	ensembl	74_37	+1	known	frame_shift_del	c.33	p.T13fs	1.000	NULL	pfam_Anoctamin	-	no_errors	ANO4	HGNC	ENSG00000151572				141	0	0	104	17	14.0496
UTP20	0	genome.wustl.edu	37	12	101779776	101779776	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	101779776	101779776	A	-	DEL	UTP20	ENST00000261637	human	ensembl	74_37	+1	known	frame_shift_del	c.8233	p.M2747fs	1.000	NULL	pfam_DRIM,superfamily_ARM-type_fold	-	no_errors	UTP20	HGNC	ENSG00000120800				130	0	0	91	13	12.5
CHPT1	0	genome.wustl.edu	37	12	102108338	102108338	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	102108338	102108338	T	-	DEL	CHPT1	ENST00000229266	human	ensembl	74_37	+1	known	frame_shift_del	c.478	p.F162fs	0.989	pfam_CDP-OH_P_trans,pirsf_CHOPT	pfam_CDP-OH_P_trans,pirsf_CHOPT	-	no_errors	CHPT1	HGNC	ENSG00000111666				119	0	0	74	10	11.9048
GNPTAB	0	genome.wustl.edu	37	12	102158002	102158002	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	102158002	102158002	T	-	DEL	GNPTAB	ENST00000299314	human	ensembl	74_37	-1	known	frame_shift_del	c.2693	p.K898fs	1.000	NULL	pfam_DMAP1-bd,pfam_Notch_dom,pfam_DUF3184,superfamily_Notch_dom,smart_Notch_dom,pfscan_EF_hand_dom,pfscan_Notch_dom	-	no_errors	GNPTAB	HGNC	ENSG00000111670				225	0	0	158	17	9.71429
GNPTAB	0	genome.wustl.edu	37	12	102158708	102158708	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	102158708	102158708	C	-	DEL	GNPTAB	ENST00000299314	human	ensembl	74_37	-1	known	frame_shift_del	c.1987	p.E663fs	0.296	NULL	pfam_DMAP1-bd,pfam_Notch_dom,pfam_DUF3184,superfamily_Notch_dom,smart_Notch_dom,pfscan_EF_hand_dom,pfscan_Notch_dom	-	no_errors	GNPTAB	HGNC	ENSG00000111670				109	0	0	72	8	10
HCFC2	0	genome.wustl.edu	37	12	104476535	104476535	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	104476535	104476535	A	-	DEL	HCFC2	ENST00000229330	human	ensembl	74_37	+1	known	frame_shift_del	c.919	p.N309fs	1.000	NULL	pfam_Kelch_1,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	HCFC2	HGNC	ENSG00000111727				110	0	0	49	15	23.4375
ACACB	0	genome.wustl.edu	37	12	109604775	109604775	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	109604775	109604775	G	-	DEL	ACACB	ENST00000338432	human	ensembl	74_37	+1	known	frame_shift_del	c.763	p.D257fs	1.000	superfamily_PreATP-grasp_dom	pfam_AcCoA_COase_cen,pfam_Carboxyl_trans,pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,superfamily_PreATP-grasp_dom,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_COA_CT_N,pfscan_COA_CT_C,pfscan_Biotin_lipoyl	-	no_errors	ACACB	HGNC	ENSG00000076555				74	0	0	70	17	19.5402
PPTC7	0	genome.wustl.edu	37	12	110977634	110977634	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	110977634	110977634	T	-	DEL	PPTC7	ENST00000354300	human	ensembl	74_37	-1	known	frame_shift_del	c.719	p.K240fs	1.000	pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom	pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom	-	no_errors	PPTC7	HGNC	ENSG00000196850				85	0	0	47	14	22.9508
PPP1CC	0	genome.wustl.edu	37	12	111160421	111160423	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	111160421	111160423	AAG	-	DEL	PPP1CC	ENST00000340766	human	ensembl	74_37	-1	known	in_frame_del	c.603_601	p.L201in_frame_del	1.000:1.000:1.000	pfam_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase,prints_Ser/Thr-sp_prot-phosphatase	pfam_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase,prints_Ser/Thr-sp_prot-phosphatase	-	no_errors	PPP1CC	HGNC	ENSG00000186298				92	0	0	65	16	19.7531
CCDC60	0	genome.wustl.edu	37	12	119968733	119968734	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	119968733	119968734	-	A	INS	CCDC60	ENST00000327554	human	ensembl	74_37	+1	known	frame_shift_ins	c.1416_1417	p.I474fs	0.996:0.988	NULL	NULL	-	no_errors	CCDC60	HGNC	ENSG00000183273				147	0	0	108	7	6.08696
LRRC43	0	genome.wustl.edu	37	12	122685346	122685346	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	122685346	122685346	C	-	DEL	LRRC43	ENST00000339777	human	ensembl	74_37	+1	known	frame_shift_del	c.1674	p.I561fs	0.997	NULL	NULL	-	no_errors	LRRC43	HGNC	ENSG00000158113				85	0	0	78	8	9.30233
ABCB9	0	genome.wustl.edu	37	12	123424729	123424729	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	123424729	123424729	G	-	DEL	ABCB9	ENST00000442028	human	ensembl	74_37	-1	known	frame_shift_del	c.1672	p.L558fs	0.996	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC1_TM_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCB9	HGNC	ENSG00000150967				35	0	0	38	14	26.9231
CCDC92	0	genome.wustl.edu	37	12	124422018	124422019	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	124422018	124422019	-	G	INS	CCDC92	ENST00000238156	human	ensembl	74_37	-1	known	frame_shift_ins	c.583_582	p.K194fs	1.000:1.000	NULL	NULL	-	no_errors	CCDC92	HGNC	ENSG00000119242				71	0	0	72	7	8.86076
SCARB1	0	genome.wustl.edu	37	12	125267351	125267352	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	125267351	125267352	-	T	INS	SCARB1	ENST00000261693	human	ensembl	74_37	-1	known	frame_shift_ins	c.1408_1407	p.C469fs	0.891:0.269	NULL	pfam_CD36,prints_CD36,prints_CD36_antigen	-	no_errors	SCARB1	HGNC	ENSG00000073060				80	0	0	64	9	12.3288
GPR133	0	genome.wustl.edu	37	12	131466442	131466442	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	131466442	131466442	T	-	DEL	GPR133	ENST00000261654	human	ensembl	74_37	+1	known	frame_shift_del	c.324	p.F110fs	0.306	superfamily_ConA-like_lec_gl_sf	pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl_sf,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR133	HGNC	ENSG00000111452				166	0	0	124	14	10.1449
PDE3A	0	genome.wustl.edu	37	12	20522723	20522723	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	20522723	20522723	G	-	DEL	PDE3A	ENST00000359062	human	ensembl	74_37	+1	known	frame_shift_del	c.505	p.E171fs	1.000	NULL	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom	-	no_errors	PDE3A	HGNC	ENSG00000172572				43	0	0	45	8	15.0943
SLCO1C1	0	genome.wustl.edu	37	12	20890197	20890197	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	20890197	20890197	A	-	DEL	SLCO1C1	ENST00000381552	human	ensembl	74_37	+1	known	frame_shift_del	c.1539	p.N515fs	0.985	pfam_OA_transporter,pfam_Kazal_dom,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal_dom,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	-	no_errors	SLCO1C1	HGNC	ENSG00000139155				88	0	0	76	5	6.17284
SLCO1B7	0	genome.wustl.edu	37	12	21196423	21196423	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	21196423	21196423	T	-	DEL	SLCO1B7	ENST00000554957	human	ensembl	74_37	+1	known	frame_shift_del	c.883	p.L296fs	0.000	pfam_OA_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO1B7	HGNC	ENSG00000205754				89	0	0	53	5	8.62069
ST8SIA1	0	genome.wustl.edu	37	12	22486986	22486986	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	22486986	22486986	C	-	DEL	ST8SIA1	ENST00000396037	human	ensembl	74_37	-1	known	frame_shift_del	c.181	p.V61fs	1.000	pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST8SIA1	HGNC	ENSG00000111728				89	0	0	94	6	6
LINC00477	0	genome.wustl.edu	37	12	24736562	24736562	+	RNA	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	24736562	24736562	A	-	DEL	LINC00477	ENST00000483544	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.301	-	-	-	no_errors	LINC00477	HGNC	ENSG00000197503				78	0	0	70	7	9.09091
IPO8	0	genome.wustl.edu	37	12	30822191	30822192	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	30822191	30822192	-	A	INS	IPO8	ENST00000256079	human	ensembl	74_37	-1	known	frame_shift_ins	c.1070_1069	p.S357fs	1.000:1.000	pfam_Cse1,superfamily_ARM-type_fold	pfam_Importin-beta_N,pfam_Cse1,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	IPO8	HGNC	ENSG00000133704				132	0	0	83	7	7.77778
ALG10	0	genome.wustl.edu	37	12	34178860	34178860	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	34178860	34178860	T	-	DEL	ALG10	ENST00000266483	human	ensembl	74_37	+1	known	frame_shift_del	c.432	p.F146fs	1.000	pfam_Alg10,pirsf_Alg10	pfam_Alg10,pirsf_Alg10	-	no_errors	ALG10	HGNC	ENSG00000139133				232	0	0	142	22	13.4146
KIF21A	0	genome.wustl.edu	37	12	39733972	39733972	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	39733972	39733972	T	-	DEL	KIF21A	ENST00000395670	human	ensembl	74_37	-1	known	frame_shift_del	c.2305	p.T769fs	1.000	NULL	pfam_Kinesin_motor_dom,pfam_WD40_repeat,superfamily_P-loop_NTPase,superfamily_WD40_repeat_dom,superfamily_Prefoldin,superfamily_ARM-type_fold,smart_Kinesin_motor_dom,smart_WD40_repeat,pfscan_Kinesin_motor_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Kinesin_motor_dom	-	no_errors	KIF21A	HGNC	ENSG00000139116				81	0	0	38	12	24
KIF21A	0	genome.wustl.edu	37	12	39745580	39745580	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	39745580	39745580	T	-	DEL	KIF21A	ENST00000395670	human	ensembl	74_37	-1	known	frame_shift_del	c.1672	p.R558fs	1.000	superfamily_ARM-type_fold	pfam_Kinesin_motor_dom,pfam_WD40_repeat,superfamily_P-loop_NTPase,superfamily_WD40_repeat_dom,superfamily_Prefoldin,superfamily_ARM-type_fold,smart_Kinesin_motor_dom,smart_WD40_repeat,pfscan_Kinesin_motor_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Kinesin_motor_dom	-	no_errors	KIF21A	HGNC	ENSG00000139116				69	0	0	49	8	14.0351
LRRK2	0	genome.wustl.edu	37	12	40688654	40688654	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	40688654	40688654	T	-	DEL	LRRK2	ENST00000298910	human	ensembl	74_37	+1	known	frame_shift_del	c.2816	p.F940fs	0.837	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_MIRO-like,pfam_Small_GTPase,pfam_Leu-rich_rpt,pfam_Small_GTPase_ARF/SAR,superfamily_Kinase-like_dom,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,superfamily_WD40_repeat_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Small_GTPase_Rab_type,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,prints_Small_GTPase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	LRRK2	HGNC	ENSG00000188906				63	0	0	35	8	18.6047
KDM5A	0	genome.wustl.edu	37	12	432249	432249	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	432249	432249	T	-	DEL	KDM5A	ENST00000399788	human	ensembl	74_37	-1	known	frame_shift_del	c.2274	p.D759fs	1.000	pfam_Lys_sp_deMease_like_dom	pfam_Lys_sp_deMease_like_dom,pfam_JmjC_dom,pfam_Znf_PHD-finger,pfam_ARID/BRIGHT_DNA-bd,pfam_Znf_C5HC2,pfam_TF_JmjN,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_Znf_PHD,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	KDM5A	HGNC	ENSG00000073614				115	0	0	78	7	8.23529
ARID2	0	genome.wustl.edu	37	12	46231159	46231160	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	46231159	46231160	-	A	INS	ARID2	ENST00000334344	human	ensembl	74_37	+1	known	frame_shift_ins	c.1079_1080	p.C362fs	1.000:1.000	superfamily_ARM-type_fold	pfam_ARID/BRIGHT_DNA-bd,pfam_DNA-bd_RFX,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID2	HGNC	ENSG00000189079				187	0	0	115	11	8.73016
ARID2	0	genome.wustl.edu	37	12	46243991	46243992	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	46243991	46243992	-	C	INS	ARID2	ENST00000334344	human	ensembl	74_37	+1	known	frame_shift_ins	c.2085_2086	p.Q695fs	0.998:1.000	NULL	pfam_ARID/BRIGHT_DNA-bd,pfam_DNA-bd_RFX,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID2	HGNC	ENSG00000189079				174	0	0	120	8	6.25
SENP1	0	genome.wustl.edu	37	12	48458896	48458896	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	48458896	48458896	T	-	DEL	SENP1	ENST00000004980	human	ensembl	74_37	-1	known	frame_shift_del	c.1227	p.G410fs	0.206	NULL	pfam_Peptidase_C48,pfscan_Peptidase_C48	-	no_errors	SENP1	HGNC	ENSG00000079387				56	0	0	48	14	22.5806
KMT2D	0	genome.wustl.edu	37	12	49445525	49445526	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	49445525	49445526	-	G	INS	KMT2D	ENST00000301067	human	ensembl	74_37	-1	known	frame_shift_ins	c.1941_1940	p.P648fs	0.000:0.001	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2D	HGNC	ENSG00000167548				56	0	0	51	18	26.087
PRPF40B	0	genome.wustl.edu	37	12	50025258	50025258	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	50025258	50025258	C	-	DEL	PRPF40B	ENST00000548825	human	ensembl	74_37	+1	known	frame_shift_del	c.159	p.M56fs	0.994	NULL	pfam_FF_domain,pfam_WW_dom,superfamily_FF_domain,superfamily_WW_dom,smart_WW_dom,smart_FF_domain,pfscan_WW_dom	-	no_errors	PRPF40B	HGNC	ENSG00000110844				80	0	0	75	22	22.6804
KRT83	0	genome.wustl.edu	37	12	52714895	52714895	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	52714895	52714895	C	-	DEL	KRT83	ENST00000293670	human	ensembl	74_37	-1	known	frame_shift_del	c.225	p.C76fs	0.908	NULL	pfam_IF,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT83	HGNC	ENSG00000170523				100	0	0	92	7	7.07071
KRT72	0	genome.wustl.edu	37	12	52985414	52985415	+	Splice_Site	INS	-	-	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	52985414	52985415	-	G	INS	KRT72	ENST00000293745	human	ensembl	74_37	-1	known	splice_site_ins	c.799-3_799-2	e5-2	1.000:0.760	-	-	-	no_errors	KRT72	HGNC	ENSG00000170486				84	0	0	78	8	9.30233
OR6C75	0	genome.wustl.edu	37	12	55759486	55759486	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	55759486	55759486	T	-	DEL	OR6C75	ENST00000343399	human	ensembl	74_37	+1	known	frame_shift_del	c.592	p.L200fs	0.582	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6C75	HGNC	ENSG00000187857				135	0	0	100	15	13.0435
COQ10A	0	genome.wustl.edu	37	12	56661678	56661678	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	56661678	56661678	C	-	DEL	COQ10A	ENST00000308197	human	ensembl	74_37	+1	known	frame_shift_del	c.235	p.F80fs	1.000	NULL	pfam_Polyket_cyc	-	no_errors	COQ10A	HGNC	ENSG00000135469				179	0	0	174	13	6.95187
VWF	0	genome.wustl.edu	37	12	6091141	6091143	+	In_Frame_Del	DEL	CTC	CTC	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	6091141	6091143	CTC	-	DEL	VWF	ENST00000261405	human	ensembl	74_37	-1	known	in_frame_del	c.7098_7096	p.E2366in_frame_del	0.984:0.996:1.000	pirsf_VWF	pirsf_VWF,pfam_VWF_type-D,pfam_VWF_A,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_VWF_A,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_A,pfscan_VWF_C	-	no_errors	VWF	HGNC	ENSG00000110799				63	0	0	51	5	8.92857
TMBIM4	0	genome.wustl.edu	37	12	66531937	66531937	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	66531937	66531937	A	-	DEL	TMBIM4	ENST00000358230	human	ensembl	74_37	-1	known	frame_shift_del	c.520	p.Y174fs	0.028	pfam_Bax_inhibitor_1-related	pfam_Bax_inhibitor_1-related	-	no_errors	TMBIM4	HGNC	ENSG00000155957				50	0	0	38	13	25.4902
IRAK3	0	genome.wustl.edu	37	12	66610954	66610954	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	66610954	66610954	A	-	DEL	IRAK3	ENST00000261233	human	ensembl	74_37	+1	known	frame_shift_del	c.592	p.M200fs	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Death_domain,superfamily_Kinase-like_dom,superfamily_DEATH-like_dom,smart_Death_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Death_domain,pfscan_Prot_kinase_dom	-	no_errors	IRAK3	HGNC	ENSG00000090376				548	1	0.182149	364	27	6.90537
CHD4	0	genome.wustl.edu	37	12	6711546	6711546	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	6711546	6711546	T	-	DEL	CHD4	ENST00000309577	human	ensembl	74_37	-1	known	frame_shift_del	c.218	p.K73fs	1.000	NULL	pfam_CHD_C2,pfam_DUF1086,pfam_SNF2_N,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,superfamily_Homeodomain-like,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD4	HGNC	ENSG00000111642				389	1	0.25641	303	72	19.2
IL22	0	genome.wustl.edu	37	12	68645294	68645294	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	68645294	68645294	T	-	DEL	IL22	ENST00000328087	human	ensembl	74_37	-1	known	frame_shift_del	c.461	p.K154fs	0.685	superfamily_4_helix_cytokine-like_core,prints_IL-22	superfamily_4_helix_cytokine-like_core,prints_IL-22,prints_IL-24	-	no_errors	IL22	HGNC	ENSG00000127318				127	0	0	85	6	6.59341
MDM2	0	genome.wustl.edu	37	12	69233090	69233090	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	69233090	69233090	C	-	DEL	MDM2	ENST00000462284	human	ensembl	74_37	+1	known	frame_shift_del	c.955	p.L321fs	1.000	pfam_Znf_RanBP2,pirsf_p53_neg-reg_MDM_2/4,pfscan_Znf_RanBP2	pfam_SWIB_MDM2_domain,pfam_Znf_RanBP2,superfamily_SWIB_MDM2_domain,pirsf_p53_neg-reg_MDM_2/4,pfscan_Znf_RanBP2,pfscan_Znf_RING	-	no_errors	MDM2	HGNC	ENSG00000135679				97	0	0	88	7	7.36842
MDM2	0	genome.wustl.edu	37	12	69233240	69233240	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	69233240	69233240	A	-	DEL	MDM2	ENST00000462284	human	ensembl	74_37	+1	known	frame_shift_del	c.1105	p.T371fs	1.000	pirsf_p53_neg-reg_MDM_2/4	pfam_SWIB_MDM2_domain,pfam_Znf_RanBP2,superfamily_SWIB_MDM2_domain,pirsf_p53_neg-reg_MDM_2/4,pfscan_Znf_RanBP2,pfscan_Znf_RING	-	no_errors	MDM2	HGNC	ENSG00000135679				82	0	0	74	8	9.7561
TBC1D15	0	genome.wustl.edu	37	12	72290554	72290554	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	72290554	72290554	A	-	DEL	TBC1D15	ENST00000550746	human	ensembl	74_37	+1	known	frame_shift_del	c.1133	p.T380fs	0.987	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_DUF3548,pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D15	HGNC	ENSG00000121749				92	0	0	57	13	18.5714
KRR1	0	genome.wustl.edu	37	12	75897786	75897787	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	75897786	75897787	-	A	INS	KRR1	ENST00000229214	human	ensembl	74_37	-1	known	frame_shift_ins	c.729_728	p.L243fs	1.000:1.000	NULL	pfam_KH_dom_type_1,smart_KH_dom	-	no_errors	KRR1	HGNC	ENSG00000111615				164	0	0	113	6	5.04202
NAV3	0	genome.wustl.edu	37	12	78400806	78400806	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	78400806	78400806	A	-	DEL	NAV3	ENST00000397909	human	ensembl	74_37	+1	known	frame_shift_del	c.1488	p.K498fs	0.960	NULL	pfam_CH-domain,pfam_ATPase_AAA_core,superfamily_CH-domain,superfamily_P-loop_NTPase,smart_CH-domain,smart_AAA+_ATPase,pfscan_CH-domain	-	no_errors	NAV3	HGNC	ENSG00000067798				97	0	0	65	21	24.4186
SYT1	0	genome.wustl.edu	37	12	79693277	79693277	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	79693277	79693277	T	-	DEL	SYT1	ENST00000261205	human	ensembl	74_37	+1	known	frame_shift_del	c.756	p.F253fs	1.000	superfamily_C2_dom,smart_C2_dom	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom,prints_Synaptotagmin,prints_C2_dom	-	no_errors	SYT1	HGNC	ENSG00000067715				107	0	0	94	9	8.73786
SLC2A3	0	genome.wustl.edu	37	12	8083940	8083940	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	8083940	8083940	A	-	DEL	SLC2A3	ENST00000075120	human	ensembl	74_37	-1	known	frame_shift_del	c.411	p.F137fs	0.972	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,prints_Sugar/inositol_transpt,prints_Glc_transpt_3,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	pfam_Sub_transporter,pfam_MFS,pfam_Folate_carrier,superfamily_MFS_dom_general_subst_transpt,prints_Sugar/inositol_transpt,prints_Glc_transpt_3,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	-	no_errors	SLC2A3	HGNC	ENSG00000059804				100	0	0	72	12	14.2857
CEP290	0	genome.wustl.edu	37	12	88524079	88524079	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	88524079	88524079	T	-	DEL	CEP290	ENST00000309041	human	ensembl	74_37	-1	known	frame_shift_del	c.635	p.N212fs	1.000	NULL	NULL	-	no_errors	CEP290	HGNC	ENSG00000198707				311	0	0	159	42	20.8955
TMTC3	0	genome.wustl.edu	37	12	88586525	88586525	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	88586525	88586525	A	-	DEL	TMTC3	ENST00000266712	human	ensembl	74_37	+1	known	frame_shift_del	c.1851	p.N619fs	0.393	pfam_TPR_2,pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR_2,pfam_TPR_1,pfam_DUF1736,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TMTC3	HGNC	ENSG00000139324				180	0	0	141	11	7.23684
GALNT4	0	genome.wustl.edu	37	12	89917838	89917840	+	In_Frame_Del	DEL	AGG	AGG	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	AGG	AGG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	89917838	89917840	AGG	-	DEL	GALNT4	ENST00000529983	human	ensembl	74_37	-1	known	in_frame_del	c.489_487	p.P163in_frame_del	0.112:1.000:0.999	pfam_Glyco_trans_2	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT4	HGNC	ENSG00000257594				92	0	0	63	13	17.1053
ELK3	0	genome.wustl.edu	37	12	96641028	96641029	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	96641028	96641029	-	C	INS	ELK3	ENST00000228741	human	ensembl	74_37	+1	known	frame_shift_ins	c.518_519	p.V176fs	0.017:0.019	NULL	pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	ELK3	HGNC	ENSG00000111145				61	0	0	54	10	15.625
C12orf55	0	genome.wustl.edu	37	12	97093817	97093817	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	12	97093817	97093817	A	-	DEL	C12orf55	ENST00000524981	human	ensembl	74_37	+1	putative	frame_shift_del	c.6420	p.N2142fs	0.981	NULL	superfamily_Fibronectin_type3	-	no_errors	C12orf55	HGNC	ENSG00000188596				203	1	0.490196	127	9	6.61765
FAM155A	0	genome.wustl.edu	37	13	108518338	108518338	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	108518338	108518338	C	-	DEL	FAM155A	ENST00000375915	human	ensembl	74_37	-1	known	frame_shift_del	c.607	p.D203fs	0.252	NULL	NULL	-	no_errors	FAM155A	HGNC	ENSG00000204442				113	0	0	108	25	18.797
FAM155A	0	genome.wustl.edu	37	13	108518653	108518655	+	In_Frame_Del	DEL	GCC	GCC	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	GCC	GCC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	108518653	108518655	GCC	-	DEL	FAM155A	ENST00000375915	human	ensembl	74_37	-1	known	in_frame_del	c.292_290	p.R97in_frame_del	1.000:1.000:1.000	NULL	NULL	-	no_errors	FAM155A	HGNC	ENSG00000204442				17	0	0	13	7	35
COL4A2	0	genome.wustl.edu	37	13	111156324	111156324	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	111156324	111156324	C	-	DEL	COL4A2	ENST00000360467	human	ensembl	74_37	+1	known	frame_shift_del	c.4269	p.G1426fs	0.956	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A2	HGNC	ENSG00000134871				25	0	0	30	7	18.9189
ATP11A	0	genome.wustl.edu	37	13	113487269	113487270	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	113487269	113487270	-	G	INS	ATP11A	ENST00000375630	human	ensembl	74_37	+1	known	frame_shift_ins	c.1491_1492	p.K499fs	0.028:0.039	superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP11A	HGNC	ENSG00000068650				226	0	0	232	13	5.30612
UPF3A	0	genome.wustl.edu	37	13	115057211	115057211	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	115057211	115057211	A	-	DEL	UPF3A	ENST00000375299	human	ensembl	74_37	+1	known	frame_shift_del	c.790	p.E267fs	0.943	NULL	pfam_Nonsense_mediated_decay_UPF3	-	no_errors	UPF3A	HGNC	ENSG00000169062				45	0	0	25	7	21.875
TPTE2	0	genome.wustl.edu	37	13	20010428	20010429	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	20010428	20010429	-	A	INS	TPTE2	ENST00000382977	human	ensembl	74_37	-1	known	frame_shift_ins	c.1054_1053	p.G351fs	0.998:0.996	pfam_Dual-sp_phosphatase_cat-dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ	pfam_Tensin_phosphatase_C2-dom,pfam_Ion_trans_dom,pfam_Dual-sp_phosphatase_cat-dom,superfamily_C2_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TPTE2	HGNC	ENSG00000132958				66	0	0	44	7	13.7255
GJB6	0	genome.wustl.edu	37	13	20796930	20796931	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	20796930	20796931	-	T	INS	GJB6	ENST00000241124	human	ensembl	74_37	-1	known	frame_shift_ins	c.690_689	p.N230fs	0.001:0.000	NULL	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin	-	no_errors	GJB6	HGNC	ENSG00000121742				132	0	0	101	9	8.18182
MIPEP	0	genome.wustl.edu	37	13	24384050	24384050	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	24384050	24384050	T	-	DEL	MIPEP	ENST00000382172	human	ensembl	74_37	-1	known	frame_shift_del	c.1667	p.N556fs	0.000	pfam_Pept_M3A_M3B	pfam_Pept_M3A_M3B	-	no_errors	MIPEP	HGNC	ENSG00000027001				188	0	0	124	23	15.6463
PABPC3	0	genome.wustl.edu	37	13	25670381	25670381	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	25670381	25670381	G	-	DEL	PABPC3	ENST00000281589	human	ensembl	74_37	+1	known	frame_shift_del	c.45	p.D17fs	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_PABP_1234	pfam_RRM_dom,pfam_PABP_HYD,superfamily_PABP_HYD,smart_RRM_dom,smart_RRM_dom_euk,smart_PABP_HYD,pfscan_RRM_dom,tigrfam_PABP_1234	-	no_errors	PABPC3	HGNC	ENSG00000151846				65	0	0	69	7	9.21053
WASF3	0	genome.wustl.edu	37	13	27255387	27255387	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	27255387	27255387	C	-	DEL	WASF3	ENST00000335327	human	ensembl	74_37	+1	known	frame_shift_del	c.913	p.P307fs	0.975	NULL	pfam_WH2_dom,smart_WH2_dom,pfscan_WH2_dom	-	no_errors	WASF3	HGNC	ENSG00000132970				78	0	0	88	5	5.37634
WASF3	0	genome.wustl.edu	37	13	27259835	27259836	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	27259835	27259836	-	A	INS	WASF3	ENST00000335327	human	ensembl	74_37	+1	known	frame_shift_ins	c.1362_1363	p.V456fs	1.000:1.000	pfam_WH2_dom,smart_WH2_dom,pfscan_WH2_dom	pfam_WH2_dom,smart_WH2_dom,pfscan_WH2_dom	-	no_errors	WASF3	HGNC	ENSG00000132970				88	0	0	77	6	7.22892
PDS5B	0	genome.wustl.edu	37	13	33344888	33344888	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	33344888	33344888	A	-	DEL	PDS5B	ENST00000315596	human	ensembl	74_37	+1	known	frame_shift_del	c.4161	p.N1390fs	0.002	NULL	superfamily_ARM-type_fold	-	no_errors	PDS5B	HGNC	ENSG00000083642				10	0	0	3	4	57.1429
CSNK1A1L	0	genome.wustl.edu	37	13	37678703	37678704	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	37678703	37678704	-	T	INS	CSNK1A1L	ENST00000379800	human	ensembl	74_37	-1	known	frame_shift_ins	c.691_690	p.Q230fs	1.000:1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CSNK1A1L	HGNC	ENSG00000180138				137	0	0	84	18	17.6471
FREM2	0	genome.wustl.edu	37	13	39433580	39433580	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	39433580	39433580	T	-	DEL	FREM2	ENST00000280481	human	ensembl	74_37	+1	known	frame_shift_del	c.7372	p.F2459fs	1.000	NULL	pfam_Calx_beta,superfamily_Cadherin-like,smart_Calx_beta	-	no_errors	FREM2	HGNC	ENSG00000150893				121	0	0	122	8	6.15385
MRPS31	0	genome.wustl.edu	37	13	41331010	41331010	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	41331010	41331010	T	-	DEL	MRPS31	ENST00000323563	human	ensembl	74_37	-1	known	frame_shift_del	c.739	p.R247fs	0.834	NULL	NULL	-	no_errors	MRPS31	HGNC	ENSG00000102738				118	1	0.840336	58	13	18.3099
NAA16	0	genome.wustl.edu	37	13	41936272	41936272	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	41936272	41936272	A	-	DEL	NAA16	ENST00000379406	human	ensembl	74_37	+1	known	frame_shift_del	c.1516	p.K507fs	1.000	pirsf_NatA_aux_su	pfam_TPR_2,pfam_NatA_aux_su,pfam_TPR_1,smart_TPR_repeat,pirsf_NatA_aux_su,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	NAA16	HGNC	ENSG00000172766				111	0	0	77	17	18.0851
AKAP11	0	genome.wustl.edu	37	13	42893303	42893303	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	42893303	42893303	A	-	DEL	AKAP11	ENST00000025301	human	ensembl	74_37	+1	known	frame_shift_del	c.5645	p.A1884fs	0.952	NULL	NULL	-	no_errors	AKAP11	HGNC	ENSG00000023516				50	0	0	27	8	22.8571
ZC3H13	0	genome.wustl.edu	37	13	46543660	46543661	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	46543660	46543661	-	T	INS	ZC3H13	ENST00000242848	human	ensembl	74_37	-1	known	frame_shift_ins	c.3019_3018	p.R1006fs	1.000:0.998	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H13	HGNC	ENSG00000123200				129	1	0.769231	95	15	13.6364
DACH1	0	genome.wustl.edu	37	13	72204775	72204775	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	72204775	72204775	T	-	DEL	DACH1	ENST00000359684	human	ensembl	74_37	-1	known	frame_shift_del	c.1045	p.I349fs	1.000	NULL	pfam_Transform_Ski,superfamily_DNA-bd_dom_put	-	no_errors	DACH1	HGNC	ENSG00000165659				237	1	0.420168	195	12	5.7971
SLITRK1	0	genome.wustl.edu	37	13	84455508	84455509	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	84455508	84455509	-	T	INS	SLITRK1	ENST00000377084	human	ensembl	74_37	-1	known	frame_shift_ins	c.135_134	p.F47fs	1.000:1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK1	HGNC	ENSG00000178235				135	0	0	80	23	22.3301
FARP1	0	genome.wustl.edu	37	13	99092237	99092237	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	99092237	99092237	G	-	DEL	FARP1	ENST00000376586	human	ensembl	74_37	+1	known	frame_shift_del	c.2549	p.V852fs	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_FERM_PH-like_C,pfam_FERM_N,pfam_FERM-adjacent,pfam_FERM_central,superfamily_DH-domain,superfamily_FERM_central,smart_Band_41_domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_FERM_domain,pfscan_Pleckstrin_homology,pfscan_DH-domain,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	FARP1	HGNC	ENSG00000152767				267	0	0	279	22	7.30897
GPR18	0	genome.wustl.edu	37	13	99907540	99907540	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	13	99907540	99907540	A	-	DEL	GPR18	ENST00000340807	human	ensembl	74_37	-1	known	frame_shift_del	c.587	p.F196fs	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR18	HGNC	ENSG00000125245				87	0	0	75	5	6.25
XRCC3	0	genome.wustl.edu	37	14	104165201	104165201	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	104165201	104165201	G	-	DEL	XRCC3	ENST00000352127	human	ensembl	74_37	-1	known	frame_shift_del	c.975	p.S326fs	0.009	pfam_DNA_recomb/repair_Rad51_C,superfamily_P-loop_NTPase,pirsf_DNA_recomb/repair_RecA-like	pfam_DNA_recomb/repair_Rad51_C,superfamily_P-loop_NTPase,pirsf_DNA_recomb/repair_RecA-like,pfscan_DNA_recomb_RecA/RadB_ATP-bd	-	no_errors	XRCC3	HGNC	ENSG00000126215				17	0	0	6	5	45.4545
AHNAK2	0	genome.wustl.edu	37	14	105406338	105406338	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	105406338	105406338	C	-	DEL	AHNAK2	ENST00000333244	human	ensembl	74_37	-1	known	frame_shift_del	c.15450	p.I5151fs	0.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567				105	0	0	112	8	6.66667
PACS2	0	genome.wustl.edu	37	14	105818795	105818797	+	In_Frame_Del	DEL	CTC	CTC	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	105818795	105818797	CTC	-	DEL	PACS2	ENST00000458164	human	ensembl	74_37	+1	known	in_frame_del	c.288_290	p.S97in_frame_del	1.000:1.000:1.000	NULL	pfam_Phosphofurin_acidic_CS-1	-	no_errors	PACS2	HGNC	ENSG00000179364				81	0	0	83	5	5.68182
OR4Q3	0	genome.wustl.edu	37	14	20215683	20215683	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	20215683	20215683	T	-	DEL	OR4Q3	ENST00000331723	human	ensembl	74_37	+1	known	frame_shift_del	c.97	p.Y35fs	0.616	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4Q3	HGNC	ENSG00000182652				184	0	0	105	34	24.4604
TEP1	0	genome.wustl.edu	37	14	20837723	20837723	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	20837723	20837723	A	-	DEL	TEP1	ENST00000262715	human	ensembl	74_37	-1	known	frame_shift_del	c.7436	p.L2479fs	0.968	NULL	pfam_TROVE,pfam_TEP1_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_P-loop_NTPase,smart_WD40_repeat,pfscan_NACHT_NTPase,pfscan_TROVE,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TEP1	HGNC	ENSG00000129566				85	0	0	74	17	18.6813
ARHGEF40	0	genome.wustl.edu	37	14	21556192	21556192	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	21556192	21556192	C	-	DEL	ARHGEF40	ENST00000298694	human	ensembl	74_37	+1	known	frame_shift_del	c.4453	p.H1487fs	0.081	NULL	pfam_DH-domain,superfamily_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF40	HGNC	ENSG00000165801				70	0	0	86	11	11.3402
OR4E2	0	genome.wustl.edu	37	14	22133746	22133746	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	22133746	22133746	G	-	DEL	OR4E2	ENST00000408935	human	ensembl	74_37	+1	known	frame_shift_del	c.450	p.G152fs	0.147	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4E2	HGNC	ENSG00000221977				174	0	0	155	11	6.62651
LRRC16B	0	genome.wustl.edu	37	14	24538373	24538373	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	24538373	24538373	C	-	DEL	LRRC16B	ENST00000342740	human	ensembl	74_37	+1	known	frame_shift_del	c.4010	p.L1339fs	1.000	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC16B	HGNC	ENSG00000186648				59	0	0	55	9	14.0625
AKAP6	0	genome.wustl.edu	37	14	33069995	33069996	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	33069995	33069996	-	A	INS	AKAP6	ENST00000280979	human	ensembl	74_37	+1	known	frame_shift_ins	c.2727_2728	p.A910fs	1.000:1.000	NULL	smart_Spectrin/alpha-actinin	-	no_errors	AKAP6	HGNC	ENSG00000151320				125	0	0	86	10	10.4167
SRP54	0	genome.wustl.edu	37	14	35488186	35488186	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	35488186	35488186	T	-	DEL	SRP54	ENST00000216774	human	ensembl	74_37	+1	known	frame_shift_del	c.1062	p.F355fs	0.999	pfam_Signal_recog_particle_SRP54_M,superfamily_Signal_recog_particle_SRP54_M,tigrfam_SRP54_euk	pfam_SRP54_GTPase_dom,pfam_Signal_recog_particle_SRP54_M,pfam_Signal_recog_particl_SRP54_hlx,pfam_CobW/HypB/UreG_dom,pfam_CobQ/CobB/MinD/ParA_Nub-bd_dom,superfamily_P-loop_NTPase,superfamily_Signal_recog_particle_SRP54_M,superfamily_Signal_recog_particl_SRP54_hlx,smart_Signal_recog_particl_SRP54_hlx,smart_AAA+_ATPase,smart_SRP54_GTPase_dom,tigrfam_SRP54_euk	-	no_errors	SRP54	HGNC	ENSG00000100883				70	0	0	49	8	14.0351
C14orf28	0	genome.wustl.edu	37	14	45369723	45369724	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	45369723	45369724	-	G	INS	C14orf28	ENST00000325192	human	ensembl	74_37	+1	known	frame_shift_ins	c.85_86	p.V32fs	1.000:1.000	NULL	NULL	-	no_errors	C14orf28	HGNC	ENSG00000179476				90	0	0	74	6	7.5
NIN	0	genome.wustl.edu	37	14	51237236	51237236	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	51237236	51237236	T	-	DEL	NIN	ENST00000245441	human	ensembl	74_37	-1	known	frame_shift_del	c.1304	p.N435fs	0.975	NULL	superfamily_tRNA-bd_arm,pfscan_EF_hand_dom	-	no_errors	NIN	HGNC	ENSG00000100503				135	0	0	98	17	14.7826
FERMT2	0	genome.wustl.edu	37	14	53331134	53331135	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	53331134	53331135	-	T	INS	FERMT2	ENST00000343279	human	ensembl	74_37	-1	known	frame_shift_ins	c.1587_1586	p.Y530fs	1.000:1.000	pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain	pfam_FERM_central,pfam_Pleckstrin_homology,pfam_FERM_N,superfamily_FERM_central,smart_Band_41_domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	FERMT2	HGNC	ENSG00000073712				116	0	0	108	6	5.26316
FERMT2	0	genome.wustl.edu	37	14	53339632	53339633	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	53339632	53339633	-	T	INS	FERMT2	ENST00000343279	human	ensembl	74_37	-1	known	frame_shift_ins	c.1158_1157	p.L387fs	1.000:1.000	pfam_FERM_central,pfam_Pleckstrin_homology,superfamily_FERM_central,smart_Band_41_domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_FERM_central,pfam_Pleckstrin_homology,pfam_FERM_N,superfamily_FERM_central,smart_Band_41_domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	FERMT2	HGNC	ENSG00000073712				118	0	0	95	5	5
WDHD1	0	genome.wustl.edu	37	14	55451560	55451561	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	55451560	55451561	-	C	INS	WDHD1	ENST00000360586	human	ensembl	74_37	-1	known	frame_shift_ins	c.1787_1786	p.D596fs	1.000:1.000	NULL	pfam_WD40_repeat,pfam_DUF3639,pfam_TIF_beta_prop-like,superfamily_WD40_repeat_dom,superfamily_HMG_box_dom,smart_WD40_repeat,smart_HMG_box_dom,pfscan_HMG_box_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDHD1	HGNC	ENSG00000198554				108	0	0	73	6	7.59494
TMEM260	0	genome.wustl.edu	37	14	57052612	57052612	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	57052612	57052612	T	-	DEL	TMEM260	ENST00000261556	human	ensembl	74_37	+1	known	frame_shift_del	c.326	p.F111fs	1.000	pfam_DUF2723	pfam_DUF2723	-	no_errors	TMEM260	HGNC	ENSG00000070269				168	0	0	121	30	19.8675
ARID4A	0	genome.wustl.edu	37	14	58831995	58831996	+	Frame_Shift_Ins	INS	-	-	AG			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	58831995	58831996	-	AG	INS	ARID4A	ENST00000355431	human	ensembl	74_37	+1	known	frame_shift_ins	c.3188_3189	p.E1067fs	0.993:0.988	NULL	pfam_RBB1NT,pfam_ARID/BRIGHT_DNA-bd,pfam_Tudor-knot,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Chromodomain-like,smart_Tudor,smart_ARID/BRIGHT_DNA-bd,smart_Chromo_domain/shadow,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID4A	HGNC	ENSG00000032219				82	0	0	78	7	8.23529
SYNE2	0	genome.wustl.edu	37	14	64628970	64628971	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	64628970	64628971	-	C	INS	SYNE2	ENST00000358025	human	ensembl	74_37	+1	known	frame_shift_ins	c.16275_16276	p.A5427fs	0.120:0.067	NULL	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654				80	0	0	83	10	10.7527
ZBTB1	0	genome.wustl.edu	37	14	64989787	64989787	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	64989787	64989787	A	-	DEL	ZBTB1	ENST00000394712	human	ensembl	74_37	+1	known	frame_shift_del	c.1565	p.K524fs	0.222	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB1	HGNC	ENSG00000126804				210	0	0	132	15	10.2041
ZFYVE26	0	genome.wustl.edu	37	14	68249902	68249902	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	68249902	68249902	C	-	DEL	ZFYVE26	ENST00000347230	human	ensembl	74_37	-1	known	frame_shift_del	c.3967	p.A1323fs	1.000	NULL	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	-	no_errors	ZFYVE26	HGNC	ENSG00000072121				149	0	0	128	28	17.9487
ADAM21	0	genome.wustl.edu	37	14	70924417	70924418	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	70924417	70924418	-	G	INS	ADAM21	ENST00000267499	human	ensembl	74_37	+1	known	frame_shift_ins	c.201_202	p.Q69fs	0.027:0.034	pfam_Peptidase_M12B_N	pfam_Peptidase_M12B,pfam_ADAM_Cys-rich,pfam_Peptidase_M12B_N,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM21	HGNC	ENSG00000139985				232	0	0	227	12	5.02092
SIPA1L1	0	genome.wustl.edu	37	14	72165809	72165809	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	72165809	72165809	G	-	DEL	SIPA1L1	ENST00000555818	human	ensembl	74_37	+1	known	frame_shift_del	c.3486	p.G1164fs	0.341	NULL	pfam_DUF3401,pfam_Rap_GAP_dom,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP_dom	-	no_errors	SIPA1L1	HGNC	ENSG00000197555				112	0	0	78	18	18.75
YLPM1	0	genome.wustl.edu	37	14	75248466	75248466	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	75248466	75248466	C	-	DEL	YLPM1	ENST00000325680	human	ensembl	74_37	+1	known	frame_shift_del	c.1720	p.P575fs	0.999	NULL	superfamily_P-loop_NTPase	-	no_errors	YLPM1	HGNC	ENSG00000119596				139	0	0	165	14	7.82123
ZC3H14	0	genome.wustl.edu	37	14	89069237	89069238	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	89069237	89069238	-	C	INS	ZC3H14	ENST00000251038	human	ensembl	74_37	+1	known	frame_shift_ins	c.1580_1581	p.G530fs	1.000:1.000	NULL	smart_Znf_CCCH	-	no_errors	ZC3H14	HGNC	ENSG00000100722				62	0	0	42	15	26.3158
FOXN3	0	genome.wustl.edu	37	14	89628761	89628762	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	89628761	89628762	-	T	INS	FOXN3	ENST00000261302	human	ensembl	74_37	-1	known	frame_shift_ins	c.1470_1469	p.N490fs	1.000:1.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXN3	HGNC	ENSG00000053254				94	0	0	65	6	8.4507
UNC79	0	genome.wustl.edu	37	14	94088050	94088050	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	14	94088050	94088050	A	-	DEL	UNC79	ENST00000553484	human	ensembl	74_37	+1	known	frame_shift_del	c.4537	p.K1515fs	1.000	superfamily_ARM-type_fold	superfamily_P-loop_NTPase,superfamily_ARM-type_fold	-	no_errors	UNC79	HGNC	ENSG00000133958				86	0	0	63	6	8.69565
OR4F6	0	genome.wustl.edu	37	15	102346697	102346698	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	102346697	102346698	-	T	INS	OR4F6	ENST00000328882	human	ensembl	74_37	+1	known	frame_shift_ins	c.775_776	p.P261fs	0.000:0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4F6	HGNC	ENSG00000184140				163	0	0	130	9	6.47482
MKRN3	0	genome.wustl.edu	37	15	23811404	23811405	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	23811404	23811405	-	C	INS	MKRN3	ENST00000314520	human	ensembl	74_37	+1	known	frame_shift_ins	c.475_476	p.A162fs	0.960:0.962	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_CCCH,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	MKRN3	HGNC	ENSG00000179455				38	0	0	32	6	15.7895
SNHG14	0	genome.wustl.edu	37	15	25227263	25227263	+	RNA	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	25227263	25227263	A	-	DEL	SNHG14	ENST00000551361	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SNHG14	HGNC	ENSG00000224078				142	0	0	98	7	6.66667
SNHG14	0	genome.wustl.edu	37	15	25227367	25227367	+	RNA	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	25227367	25227367	T	-	DEL	SNHG14	ENST00000551361	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SNHG14	HGNC	ENSG00000224078				20	0	0	5	5	50
SNHG14	0	genome.wustl.edu	37	15	25438515	25438516	+	RNA	INS	-	-	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	25438515	25438516	-	A	INS	SNHG14	ENST00000363358	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.982:0.990	-	-	-	no_errors	SNHG14	HGNC	ENSG00000224078				422	0	0	355	31	8.03109
GABRG3	0	genome.wustl.edu	37	15	27571974	27571974	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	27571974	27571974	T	-	DEL	GABRG3	ENST00000333743	human	ensembl	74_37	+1	known	frame_shift_del	c.289	p.F98fs	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,prints_Neur_channel,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABBAg_rcpt,prints_GABAA_rcpt,prints_GABBAg3_rcpt,prints_GABAAa_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GABRG3	HGNC	ENSG00000182256				189	0	0	145	13	8.22785
OCA2	0	genome.wustl.edu	37	15	28200305	28200305	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	28200305	28200305	T	-	DEL	OCA2	ENST00000354638	human	ensembl	74_37	-1	known	frame_shift_del	c.1841	p.K614fs	1.000	pfam_Cit_transptr-like_dom,pfam_Arsenical_pump_ArsB,tigrfam_Arsenical_pump_ArsB	pfam_Cit_transptr-like_dom,pfam_Na/sul_symport,pfam_Arsenical_pump_ArsB,tigrfam_Arsenical_pump_ArsB	-	no_errors	OCA2	HGNC	ENSG00000104044				202	1	0.492611	132	27	16.9811
TJP1	0	genome.wustl.edu	37	15	29997866	29997866	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	29997866	29997866	C	-	DEL	TJP1	ENST00000346128	human	ensembl	74_37	-1	known	frame_shift_del	c.4934	p.G1645fs	1.000	pfam_ZU5,smart_ZU5,pfscan_ZU5	pfam_PDZ,pfam_ZU5,pfam_GK/Ca_channel_bsu,pfam_SH3_2,superfamily_PDZ,superfamily_P-loop_NTPase,superfamily_SH3_domain,smart_PDZ,smart_GK/Ca_channel_bsu,smart_ZU5,pfscan_PDZ,pfscan_SH3_domain,pfscan_ZU5,pfscan_Guanylate_kin-like,prints_ZonOcculS1,prints_ZonOcculdens	-	no_errors	TJP1	HGNC	ENSG00000104067				133	0	0	96	9	8.57143
LTK	0	genome.wustl.edu	37	15	41799375	41799375	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	41799375	41799375	G	-	DEL	LTK	ENST00000263800	human	ensembl	74_37	-1	known	frame_shift_del	c.1459	p.Q487fs	0.984	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	LTK	HGNC	ENSG00000062524				80	0	0	73	7	8.75
MGA	0	genome.wustl.edu	37	15	42034971	42034971	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	42034971	42034971	T	-	DEL	MGA	ENST00000219905	human	ensembl	74_37	+1	known	frame_shift_del	c.4813	p.L1606fs	0.997	NULL	pfam_TF_T-box,pfam_bHLH_dom,superfamily_p53-like_TF_DNA-bd,superfamily_bHLH_dom,smart_TF_T-box,smart_bHLH_dom,pfscan_bHLH_dom,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	MGA	HGNC	ENSG00000174197				131	0	0	96	15	13.5135
ZNF106	0	genome.wustl.edu	37	15	42742957	42742957	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	42742957	42742957	A	-	DEL	ZNF106	ENST00000263805	human	ensembl	74_37	-1	known	frame_shift_del	c.1444	p.S482fs	0.139	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_Znf_C2H2-like,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	ZNF106	HGNC	ENSG00000103994				292	0	0	191	57	22.9839
UBR1	0	genome.wustl.edu	37	15	43237655	43237655	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	43237655	43237655	G	-	DEL	UBR1	ENST00000290650	human	ensembl	74_37	-1	known	frame_shift_del	c.5122	p.L1708fs	0.995	NULL	pfam_ClpS_core,pfam_Znf_N-recognin,superfamily_Ribosomal_L7/12_C/ClpS-like,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR1	HGNC	ENSG00000159459				68	0	0	38	12	24
MAP1A	0	genome.wustl.edu	37	15	43819858	43819858	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	43819858	43819858	C	-	DEL	MAP1A	ENST00000399453	human	ensembl	74_37	+1	known	frame_shift_del	c.6187	p.R2065fs	0.638	NULL	NULL	-	no_errors	MAP1A	HGNC	ENSG00000166963				44	0	0	31	9	22.5
WDR76	0	genome.wustl.edu	37	15	44158577	44158577	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	44158577	44158577	A	-	DEL	WDR76	ENST00000263795	human	ensembl	74_37	+1	known	frame_shift_del	c.1868	p.S625fs	0.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	WDR76	HGNC	ENSG00000092470				121	0	0	83	7	7.77778
DUOX1	0	genome.wustl.edu	37	15	45440114	45440114	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	45440114	45440114	A	-	DEL	DUOX1	ENST00000321429	human	ensembl	74_37	+1	known	frame_shift_del	c.2561	p.K855fs	1.000	smart_EF_hand_dom,prints_Recoverin,pfscan_EF_hand_dom	pfam_Haem_peroxidase_animal,pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_EF_hand_dom,superfamily_Haem_peroxidase,superfamily_Riboflavin_synthase-like_b-brl,smart_EF_hand_dom,prints_Haem_peroxidase_animal_subgr,prints_Recoverin,pfscan_EF_hand_dom,pfscan_Haem_peroxidase_animal	-	no_errors	DUOX1	HGNC	ENSG00000137857				126	0	0	108	12	10
ATP8B4	0	genome.wustl.edu	37	15	50193368	50193368	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	50193368	50193368	T	-	DEL	ATP8B4	ENST00000284509	human	ensembl	74_37	-1	known	frame_shift_del	c.2210	p.K737fs	0.068	superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP8B4	HGNC	ENSG00000104043				73	0	0	51	5	8.92857
USP8	0	genome.wustl.edu	37	15	50733661	50733661	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	50733661	50733661	A	-	DEL	USP8	ENST00000307179	human	ensembl	74_37	+1	known	frame_shift_del	c.220	p.R76fs	1.000	pfam_USP8_dimer	pfam_Peptidase_C19/C67,pfam_USP8_dimer,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,superfamily_WW_dom,pfscan_Rhodanese-like_dom,pfscan_Peptidase_C19/C67	-	no_errors	USP8	HGNC	ENSG00000138592				100	0	0	58	15	20.5479
DMXL2	0	genome.wustl.edu	37	15	51750703	51750704	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	51750703	51750704	-	T	INS	DMXL2	ENST00000543779	human	ensembl	74_37	-1	known	frame_shift_ins	c.8135_8134	p.S2712fs	1.000:1.000	NULL	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL2	HGNC	ENSG00000104093				95	0	0	76	7	8.43373
DMXL2	0	genome.wustl.edu	37	15	51758424	51758424	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	51758424	51758424	A	-	DEL	DMXL2	ENST00000543779	human	ensembl	74_37	-1	known	frame_shift_del	c.7477	p.S2493fs	1.000	NULL	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL2	HGNC	ENSG00000104093				160	0	0	99	7	6.60377
DMXL2	0	genome.wustl.edu	37	15	51780296	51780297	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	51780296	51780297	-	T	INS	DMXL2	ENST00000543779	human	ensembl	74_37	-1	known	frame_shift_ins	c.5072_5071	p.M1691fs	1.000:1.000	pfam_Rav1p_C	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL2	HGNC	ENSG00000104093				139	0	0	94	9	8.73786
SCG3	0	genome.wustl.edu	37	15	51975303	51975303	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	51975303	51975303	A	-	DEL	SCG3	ENST00000220478	human	ensembl	74_37	+1	known	frame_shift_del	c.163	p.T57fs	0.993	NULL	NULL	-	no_errors	SCG3	HGNC	ENSG00000104112				232	0	0	135	14	9.39597
CCPG1	0	genome.wustl.edu	37	15	55669237	55669239	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	55669237	55669239	CTT	-	DEL	CCPG1	ENST00000310958	human	ensembl	74_37	-1	known	in_frame_del	c.364_362	p.E121in_frame_del	0.993:0.996:1.000	NULL	NULL	-	no_errors	CCPG1	HGNC	ENSG00000260916				143	0	0	75	19	20.2128
DYX1C1	0	genome.wustl.edu	37	15	55783395	55783396	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	55783395	55783396	CT	-	DEL	DYX1C1	ENST00000321149	human	ensembl	74_37	-1	known	frame_shift_del	c.331_330	p.R110fs	1.000:0.916	superfamily_HSP20-like_chaperone	pfam_TPR_1,pfam_CS_dom,superfamily_HSP20-like_chaperone,smart_TPR_repeat,pfscan_CS_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	DYX1C1	HGNC	ENSG00000256061				112	0	0	83	19	18.6275
DYX1C1	0	genome.wustl.edu	37	15	55789947	55789947	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	55789947	55789947	T	-	DEL	DYX1C1	ENST00000321149	human	ensembl	74_37	-1	known	frame_shift_del	c.234	p.E79fs	0.988	superfamily_HSP20-like_chaperone,pfscan_CS_dom	pfam_TPR_1,pfam_CS_dom,superfamily_HSP20-like_chaperone,smart_TPR_repeat,pfscan_CS_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	DYX1C1	HGNC	ENSG00000256061				206	0	0	124	28	18.4211
TEX9	0	genome.wustl.edu	37	15	56719823	56719824	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	56719823	56719824	-	A	INS	TEX9	ENST00000352903	human	ensembl	74_37	+1	known	frame_shift_ins	c.984_985	p.I330fs	0.181:0.358	NULL	NULL	-	no_errors	TEX9	HGNC	ENSG00000151575				112	0	0	85	7	7.6087
SLTM	0	genome.wustl.edu	37	15	59186310	59186310	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	59186310	59186310	T	-	DEL	SLTM	ENST00000380516	human	ensembl	74_37	-1	known	frame_shift_del	c.1460	p.N487fs	0.076	NULL	pfam_RRM_dom,pfam_SAP_dom,smart_SAP_dom,smart_RRM_dom,pfscan_SAP_dom,pfscan_RRM_dom	-	no_errors	SLTM	HGNC	ENSG00000137776				54	0	0	30	9	23.0769
RORA	0	genome.wustl.edu	37	15	60792166	60792166	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	60792166	60792166	T	-	DEL	RORA	ENST00000261523	human	ensembl	74_37	-1	known	frame_shift_del	c.1431	p.K477fs	0.995	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_ROR_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_ThyrH_rcpt	-	no_errors	RORA	HGNC	ENSG00000069667				187	0	0	139	13	8.55263
AAGAB	0	genome.wustl.edu	37	15	67528390	67528390	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	67528390	67528390	T	-	DEL	AAGAB	ENST00000261880	human	ensembl	74_37	-1	known	frame_shift_del	c.378	p.A127fs	1.000	superfamily_P-loop_NTPase	pfam_Alpha/Gamma-adaptin-bd_p34,superfamily_P-loop_NTPase	-	no_errors	AAGAB	HGNC	ENSG00000103591				181	0	0	113	21	15.6716
PIAS1	0	genome.wustl.edu	37	15	68479890	68479892	+	In_Frame_Del	DEL	CCT	CCT	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	CCT	CCT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	68479890	68479892	CCT	-	DEL	PIAS1	ENST00000249636	human	ensembl	74_37	+1	known	in_frame_del	c.1673_1675	p.S559in_frame_del	1.000:1.000:1.000	NULL	pfam_Znf_MIZ,smart_SAP_dom,pfscan_Znf_MIZ,pfscan_SAP_dom	-	no_errors	PIAS1	HGNC	ENSG00000033800				143	0	0	78	15	16.129
THAP10	0	genome.wustl.edu	37	15	71184328	71184328	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	71184328	71184328	G	-	DEL	THAP10	ENST00000249861	human	ensembl	74_37	-1	known	frame_shift_del	c.284	p.P95fs	0.001	smart_Znf_C2CH	pfam_Znf_C2CH,smart_Znf_C2CH,pfscan_Znf_C2CH	-	no_errors	THAP10	HGNC	ENSG00000129028				18	0	0	11	7	38.8889
SIN3A	0	genome.wustl.edu	37	15	75694249	75694249	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	75694249	75694249	A	-	DEL	SIN3A	ENST00000360439	human	ensembl	74_37	-1	known	frame_shift_del	c.1470	p.F490fs	1.000	pfam_PAH,superfamily_PAH	pfam_PAH,pfam_HDAC_interact,superfamily_PAH,smart_HDAC_interact	-	no_errors	SIN3A	HGNC	ENSG00000169375				71	0	0	36	14	28
CSPG4	0	genome.wustl.edu	37	15	75981842	75981854	+	Frame_Shift_Del	DEL	CCTCCAGCACCAG	CCTCCAGCACCAG	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	CCTCCAGCACCAG	CCTCCAGCACCAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	75981842	75981854	CCTCCAGCACCAG	-	DEL	CSPG4	ENST00000308508	human	ensembl	74_37	-1	known	frame_shift_del	c.1564_1552	p.L518fs	1.000:1.000:1.000:1.000:0.991:0.996:0.933:0.237:0.266:0.299:0.922:1.000:1.000	NULL	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	-	no_errors	CSPG4	HGNC	ENSG00000173546				57	0	0	69	8	10.3896
SCAPER	0	genome.wustl.edu	37	15	76958026	76958026	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	76958026	76958026	T	-	DEL	SCAPER	ENST00000324767	human	ensembl	74_37	-1	known	frame_shift_del	c.2613	p.A872fs	0.998	NULL	smart_Znf_U1	-	no_errors	SCAPER	HGNC	ENSG00000140386				47	0	0	21	6	22.2222
TMC3	0	genome.wustl.edu	37	15	81625366	81625366	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	81625366	81625366	T	-	DEL	TMC3	ENST00000359440	human	ensembl	74_37	-1	known	frame_shift_del	c.2697	p.K899fs	0.000	NULL	pfam_TMC	-	no_errors	TMC3	HGNC	ENSG00000188869				106	0	0	100	9	8.25688
FSD2	0	genome.wustl.edu	37	15	83438638	83438639	+	Splice_Site	INS	-	-	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	83438638	83438639	-	G	INS	FSD2	ENST00000334574	human	ensembl	74_37	-1	known	splice_site_ins	c.1268-3_1268-2	e7-2	1.000:0.230	-	-	-	no_errors	FSD2	HGNC	ENSG00000186628				96	0	0	77	12	13.4831
FSD2	0	genome.wustl.edu	37	15	83455681	83455682	+	Frame_Shift_Del	DEL	GT	GT	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	GT	GT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	83455681	83455682	GT	-	DEL	FSD2	ENST00000334574	human	ensembl	74_37	-1	known	frame_shift_del	c.462_461	p.H154fs	0.000:0.001	NULL	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,prints_Butyrophylin	-	no_errors	FSD2	HGNC	ENSG00000186628				82	0	0	81	9	10
C15orf40	0	genome.wustl.edu	37	15	83674354	83674354	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	83674354	83674354	T	-	DEL	C15orf40	ENST00000513601	human	ensembl	74_37	-1	known	frame_shift_del	c.457	p.T153fs	0.000	NULL	pfam_DUF167,superfamily_DUF167	-	no_errors	C15orf40	HGNC	ENSG00000169609				243	1	0.409836	169	14	7.65027
ALPK3	0	genome.wustl.edu	37	15	85400267	85400267	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	85400267	85400267	A	-	DEL	ALPK3	ENST00000258888	human	ensembl	74_37	+1	known	frame_shift_del	c.2904	p.K970fs	0.859	NULL	pfam_MHCK_EF2_kinase,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase,pfscan_Ig-like_dom	-	no_errors	ALPK3	HGNC	ENSG00000136383				136	0	0	107	22	17.0543
SYNM	0	genome.wustl.edu	37	15	99669830	99669830	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	15	99669830	99669830	A	-	DEL	SYNM	ENST00000336292	human	ensembl	74_37	+1	known	frame_shift_del	c.1262	p.T422fs	0.003	NULL	pfam_IF	-	no_errors	SYNM	HGNC	ENSG00000182253				130	0	0	126	10	7.35294
MIR365A	0	genome.wustl.edu	37	16	14403166	14403167	+	RNA	INS	-	-	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	14403166	14403167	-	G	INS	MIR365A	ENST00000362260	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000:1.000	-	-	-	no_errors	MIR365A	HGNC	ENSG00000199130				88	0	0	77	8	9.41176
FOPNL	0	genome.wustl.edu	37	16	15978038	15978038	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	15978038	15978038	T	-	DEL	FOPNL	ENST00000255759	human	ensembl	74_37	-1	known	frame_shift_del	c.53	p.K18fs	0.435	NULL	pfam_FOP_dimerisation-dom_N,smart_LisH_dimerisation,pfscan_LisH_dimerisation	-	no_errors	FOPNL	HGNC	ENSG00000133393				98	0	0	70	14	16.6667
DNAH3	0	genome.wustl.edu	37	16	21030966	21030966	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	21030966	21030966	T	-	DEL	DNAH3	ENST00000261383	human	ensembl	74_37	-1	known	frame_shift_del	c.6002	p.N2001fs	1.000	superfamily_P-loop_NTPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_AAA+_ATPase	-	no_errors	DNAH3	HGNC	ENSG00000158486				134	0	0	106	13	10.9244
HS3ST2	0	genome.wustl.edu	37	16	22826303	22826303	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	22826303	22826303	G	-	DEL	HS3ST2	ENST00000261374	human	ensembl	74_37	+1	known	frame_shift_del	c.372	p.G126fs	0.989	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	HS3ST2	HGNC	ENSG00000122254				23	0	0	16	11	40.7407
GTF3C1	0	genome.wustl.edu	37	16	27518381	27518382	+	Frame_Shift_Del	DEL	TC	TC	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	TC	TC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	27518381	27518382	TC	-	DEL	GTF3C1	ENST00000356183	human	ensembl	74_37	-1	known	frame_shift_del	c.1339_1338	p.K447fs	1.000:0.998	NULL	pfam_TFIIIC_Bblock-bd	-	no_errors	GTF3C1	HGNC	ENSG00000077235				76	0	0	52	7	11.8644
TMEM219	0	genome.wustl.edu	37	16	29979478	29979479	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	29979478	29979479	-	G	INS	TMEM219	ENST00000279396	human	ensembl	74_37	+1	known	frame_shift_ins	c.488_489	p.A165fs	1.000:0.999	NULL	NULL	-	no_errors	TMEM219	HGNC	ENSG00000149932				159	0	0	141	9	6
TAOK2	0	genome.wustl.edu	37	16	30002499	30002499	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	30002499	30002499	G	-	DEL	TAOK2	ENST00000279394	human	ensembl	74_37	+1	known	frame_shift_del	c.2760	p.G922fs	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Homeodomain-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TAOK2	HGNC	ENSG00000149930				101	0	0	101	16	13.6752
KREMEN2	0	genome.wustl.edu	37	16	3016364	3016364	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	3016364	3016364	C	-	DEL	KREMEN2	ENST00000303746	human	ensembl	74_37	+1	known	frame_shift_del	c.400	p.P135fs	0.998	pirsf_Kremen,pfam_WSC_carb-bd,superfamily_Kringle-like,smart_WSC_carb-bd_subgr,pfscan_WSC_carb-bd	pirsf_Kremen,pfam_WSC_carb-bd,pfam_Kringle,pfam_CUB_dom,superfamily_Kringle-like,superfamily_CUB_dom,smart_Kringle,smart_WSC_carb-bd_subgr,smart_CUB_dom,pfscan_CUB_dom,pfscan_Kringle,pfscan_WSC_carb-bd	-	no_errors	KREMEN2	HGNC	ENSG00000131650				76	0	0	70	24	25.5319
CD2BP2	0	genome.wustl.edu	37	16	30364358	30364358	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	30364358	30364358	G	-	DEL	CD2BP2	ENST00000305596	human	ensembl	74_37	-1	known	frame_shift_del	c.974	p.P325fs	0.853	pfam_GYF,superfamily_GYF,smart_GYF,pfscan_GYF	pfam_GYF,superfamily_GYF,smart_GYF,pfscan_GYF	-	no_errors	CD2BP2	HGNC	ENSG00000169217				52	0	0	62	8	11.4286
ZNF48	0	genome.wustl.edu	37	16	30409310	30409310	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	30409310	30409310	C	-	DEL	ZNF48	ENST00000320159	human	ensembl	74_37	+1	known	frame_shift_del	c.739	p.R249fs	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF48	HGNC	ENSG00000180035				46	0	0	37	11	22.9167
PHKG2	0	genome.wustl.edu	37	16	30768329	30768329	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	30768329	30768329	C	-	DEL	PHKG2	ENST00000563588	human	ensembl	74_37	+1	known	frame_shift_del	c.1132	p.P379fs	0.997	prints_Phosph_kin_gamma	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Phosph_kin_gamma,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PHKG2	HGNC	ENSG00000156873				115	0	0	96	17	15.0442
ZNF174	0	genome.wustl.edu	37	16	3452110	3452111	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	3452110	3452111	-	A	INS	ZNF174	ENST00000268655	human	ensembl	74_37	+1	known	frame_shift_ins	c.106_107	p.N38fs	0.037:0.000	superfamily_Retrov_capsid_C	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF174	HGNC	ENSG00000103343				256	0	0	262	14	5.07246
SLX4	0	genome.wustl.edu	37	16	3639952	3639953	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	3639952	3639953	-	A	INS	SLX4	ENST00000294008	human	ensembl	74_37	-1	known	frame_shift_ins	c.3687_3686	p.L1229fs	0.003:0.000	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	-	no_errors	SLX4	HGNC	ENSG00000188827				71	0	0	78	15	16.129
SLX4	0	genome.wustl.edu	37	16	3658541	3658541	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	3658541	3658541	C	-	DEL	SLX4	ENST00000294008	human	ensembl	74_37	-1	known	frame_shift_del	c.425	p.G142fs	0.000	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	-	no_errors	SLX4	HGNC	ENSG00000188827				85	0	0	72	18	20
RAB11FIP3	0	genome.wustl.edu	37	16	476618	476618	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	476618	476618	C	-	DEL	RAB11FIP3	ENST00000457159	human	ensembl	74_37	+1	known	frame_shift_del	c.612	p.R206fs	0.947	pfscan_EF_hand_dom	pfam_Rab-bd_FIP-RBD,pfscan_EF_hand_dom	-	no_errors	RAB11FIP3	HGNC	ENSG00000090565				38	0	0	38	7	15.5556
B3GNT9	0	genome.wustl.edu	37	16	67183783	67183783	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	67183783	67183783	A	-	DEL	B3GNT9	ENST00000449549	human	ensembl	74_37	-1	known	frame_shift_del	c.606	p.F202fs	1.000	pfam_Glyco_trans_31	pfam_Glyco_trans_31,pfam_Fringe-like	-	no_errors	B3GNT9	HGNC	ENSG00000237172				27	0	0	8	3	27.2727
CDH1	0	genome.wustl.edu	37	16	68835780	68835781	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	68835780	68835781	-	C	INS	CDH1	ENST00000261769	human	ensembl	74_37	+1	known	frame_shift_ins	c.371_372	p.P127fs	0.005:0.015	superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068				62	0	0	65	8	10.9589
SF3B3	0	genome.wustl.edu	37	16	70599416	70599416	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	70599416	70599416	T	-	DEL	SF3B3	ENST00000302516	human	ensembl	74_37	+1	known	frame_shift_del	c.2815	p.L940fs	1.000	pfam_Cleavage/polyA-sp_fac_asu_C,superfamily_WD40_repeat_dom	pfam_Cleavage/polyA-sp_fac_asu_C,superfamily_WD40_repeat_dom	-	no_errors	SF3B3	HGNC	ENSG00000189091				94	0	0	63	14	18.1818
NUDT7	0	genome.wustl.edu	37	16	77775744	77775744	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	77775744	77775744	A	-	DEL	NUDT7	ENST00000268533	human	ensembl	74_37	+1	known	frame_shift_del	c.614	p.K207fs	0.000	NULL	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like	-	no_errors	NUDT7	HGNC	ENSG00000140876				69	0	0	58	7	10.7692
TAF1C	0	genome.wustl.edu	37	16	84213650	84213651	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	84213650	84213651	-	G	INS	TAF1C	ENST00000378541	human	ensembl	74_37	-1	known	frame_shift_ins	c.1601_1600	p.Q534fs	0.999:0.998	NULL	superfamily_WD40_repeat_dom	-	no_errors	TAF1C	HGNC	ENSG00000103168				56	0	0	54	15	21.7391
SPATA2L	0	genome.wustl.edu	37	16	89764584	89764584	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	89764584	89764584	C	-	DEL	SPATA2L	ENST00000289805	human	ensembl	74_37	-1	known	frame_shift_del	c.433	p.A145fs	0.864	NULL	NULL	-	no_errors	SPATA2L	HGNC	ENSG00000158792				73	0	0	88	10	10.2041
GRIN2A	0	genome.wustl.edu	37	16	9857380	9857380	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	16	9857380	9857380	T	-	DEL	GRIN2A	ENST00000330684	human	ensembl	74_37	-1	known	frame_shift_del	c.4021	p.S1341fs	0.070	pfam_NMDAR2_C	pfam_NMDAR2_C,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2A	HGNC	ENSG00000183454				90	0	0	86	15	14.8515
YWHAE	0	genome.wustl.edu	37	17	1257558	1257560	+	In_Frame_Del	DEL	ATG	ATG	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	ATG	ATG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	1257558	1257560	ATG	-	DEL	YWHAE	ENST00000264335	human	ensembl	74_37	-1	known	in_frame_del	c.662_660	p.I220in_frame_del	1.000:1.000:1.000	pfam_14-3-3_domain,superfamily_14-3-3_domain,smart_14-3-3_domain,pirsf_14-3-3,prints_14-3-3	pfam_14-3-3_domain,superfamily_14-3-3_domain,smart_14-3-3_domain,pirsf_14-3-3,prints_14-3-3	-	no_errors	YWHAE	HGNC	ENSG00000108953				107	0	0	79	7	8.13953
RPA1	0	genome.wustl.edu	37	17	1782983	1782983	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	1782983	1782983	G	-	DEL	RPA1	ENST00000254719	human	ensembl	74_37	+1	known	frame_shift_del	c.1082	p.E363fs	1.000	superfamily_NA-bd_OB-fold,tigrfam_Rep_factor_Rpa1	pfam_Rep_factor-A_C,pfam_Rep_factor-A_N,pfam_NA-bd_OB_tRNA,superfamily_NA-bd_OB-fold,tigrfam_Rep_factor_Rpa1	-	no_errors	RPA1	HGNC	ENSG00000132383				204	0	0	171	21	10.9375
FLII	0	genome.wustl.edu	37	17	18152147	18152148	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	18152147	18152148	-	C	INS	FLII	ENST00000327031	human	ensembl	74_37	-1	known	frame_shift_ins	c.1985_1984	p.A662fs	0.934:0.924	pfam_Gelsolin_dom,smart_Villin/Gelsolin	pfam_Gelsolin_dom,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Villin/Gelsolin,prints_Villin/Gelsolin	-	no_errors	FLII	HGNC	ENSG00000177731				255	0	0	205	25	10.8696
TOP3A	0	genome.wustl.edu	37	17	18181545	18181545	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	18181545	18181545	G	-	DEL	TOP3A	ENST00000321105	human	ensembl	74_37	-1	known	frame_shift_del	c.2271	p.R758fs	0.001	NULL	pfam_Topo_IA_cen,pfam_Znf_GRF,pfam_Toprim_domain,pfam_Topo_IA_Znf,superfamily_Topo_IA_core_domain,superfamily_Znf_CCHC,smart_Toprim_domain,smart_Topo_IA_2,smart_Topo_IA_DNA-bd,prints_Topo_IA	-	no_errors	TOP3A	HGNC	ENSG00000177302				69	0	0	71	27	27.551
EPN2	0	genome.wustl.edu	37	17	19232949	19232950	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	19232949	19232950	-	A	INS	EPN2	ENST00000314728	human	ensembl	74_37	+1	known	frame_shift_ins	c.1400_1401	p.T470fs	1.000:1.000	NULL	pfam_Epsin_dom_N,pfam_ANTH_dom,superfamily_ENTH_VHS,smart_Epsin-like_N,smart_Ubiquitin-int_motif,pfscan_Epsin-like_N,pfscan_Ubiquitin-int_motif	-	no_errors	EPN2	HGNC	ENSG00000072134				109	0	0	74	22	22.9167
WSB1	0	genome.wustl.edu	37	17	25630468	25630469	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	25630468	25630469	-	A	INS	WSB1	ENST00000262394	human	ensembl	74_37	+1	known	frame_shift_ins	c.285_286	p.N96fs	0.987:0.997	superfamily_WD40_repeat_dom	pfam_WD40_repeat,pfam_SOCS_C,superfamily_WD40_repeat_dom,smart_WD40_repeat,smart_SOCS_C,pfscan_SOCS_C,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WSB1	HGNC	ENSG00000109046				130	0	0	103	9	8.03571
PAFAH1B1	0	genome.wustl.edu	37	17	2579802	2579802	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	2579802	2579802	A	-	DEL	PAFAH1B1	ENST00000397195	human	ensembl	74_37	+1	known	frame_shift_del	c.904	p.S304fs	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_Dynein_regulator_LIS1,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_LisH_dimerisation_subgr,superfamily_WD40_repeat_dom,smart_LisH_dimerisation,smart_WD40_repeat,pirsf_Dynein_regulator_LIS1,pfscan_LisH_dimerisation,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	PAFAH1B1	HGNC	ENSG00000007168				101	0	0	52	17	24.6377
NLK	0	genome.wustl.edu	37	17	26449740	26449740	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	26449740	26449740	T	-	DEL	NLK	ENST00000407008	human	ensembl	74_37	+1	known	frame_shift_del	c.570	p.F192fs	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	NLK	HGNC	ENSG00000087095				148	0	0	92	40	30.303
SUPT6H	0	genome.wustl.edu	37	17	27002006	27002006	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	27002006	27002006	A	-	DEL	SUPT6H	ENST00000314616	human	ensembl	74_37	+1	known	frame_shift_del	c.364	p.M124fs	1.000	pirsf_TF_Spt6	pfam_Rbsml_prot_S1_RNA-bd_dom,pfam_SH2,superfamily_NA-bd_OB-fold,smart_YqgF/RNaseH-like_dom,smart_RNA-binding_domain_S1,smart_SH2,pirsf_TF_Spt6,pfscan_SH2,pfscan_Rbsml_prot_S1_RNA-bd_dom	-	no_errors	SUPT6H	HGNC	ENSG00000109111				85	0	0	68	6	8.10811
TAOK1	0	genome.wustl.edu	37	17	27844497	27844498	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	27844497	27844498	-	A	INS	TAOK1	ENST00000261716	human	ensembl	74_37	+1	known	frame_shift_ins	c.1731_1732	p.E579fs	0.263:1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Homeodomain-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TAOK1	HGNC	ENSG00000160551				182	0	0	127	14	9.92908
OR1G1	0	genome.wustl.edu	37	17	3030672	3030672	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	3030672	3030672	G	-	DEL	OR1G1	ENST00000328890	human	ensembl	74_37	-1	known	frame_shift_del	c.174	p.M59fs	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR1G1	HGNC	ENSG00000183024				112	0	0	103	6	5.50459
C17orf66	0	genome.wustl.edu	37	17	34190103	34190103	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	34190103	34190103	C	-	DEL	C17orf66	ENST00000311880	human	ensembl	74_37	-1	known	frame_shift_del	c.652	p.A218fs	0.069	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	C17orf66	HGNC	ENSG00000172653				143	0	0	110	11	9.09091
KRT222	0	genome.wustl.edu	37	17	38818272	38818272	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	38818272	38818272	T	-	DEL	KRT222	ENST00000394052	human	ensembl	74_37	-1	known	frame_shift_del	c.121	p.M41fs	1.000	pfam_IF	pfam_IF,prints_Keratin_I	-	no_errors	KRT222	HGNC	ENSG00000213424				189	0	0	104	26	20
KRT33A	0	genome.wustl.edu	37	17	39506948	39506948	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	39506948	39506948	G	-	DEL	KRT33A	ENST00000007735	human	ensembl	74_37	-1	known	frame_shift_del	c.72	p.S25fs	1.000	NULL	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT33A	HGNC	ENSG00000006059				59	0	0	45	13	22.4138
DNAJC7	0	genome.wustl.edu	37	17	40134398	40134398	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	40134398	40134398	T	-	DEL	DNAJC7	ENST00000457167	human	ensembl	74_37	-1	known	frame_shift_del	c.1106	p.N369fs	1.000	NULL	pfam_TPR_1,pfam_TPR_2,pfam_DnaJ_domain,superfamily_DnaJ_domain,smart_TPR_repeat,smart_DnaJ_domain,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_DnaJ_domain,prints_DnaJ_domain	-	no_errors	DNAJC7	HGNC	ENSG00000168259				160	0	0	121	29	19.3333
WNK4	0	genome.wustl.edu	37	17	40939870	40939870	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	40939870	40939870	G	-	DEL	WNK4	ENST00000246914	human	ensembl	74_37	+1	known	frame_shift_del	c.1816	p.V608fs	0.004	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	WNK4	HGNC	ENSG00000126562				86	0	0	61	18	22.7848
ETV4	0	genome.wustl.edu	37	17	41610090	41610090	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	41610090	41610090	C	-	DEL	ETV4	ENST00000319349	human	ensembl	74_37	-1	known	frame_shift_del	c.763	p.A255fs	1.000	pfam_ETS_PEA3_N	pfam_ETS_PEA3_N,pfam_Ets_dom,smart_Ets_dom,prints_Ets_dom,pfscan_Ets_dom	-	no_errors	ETV4	HGNC	ENSG00000175832				86	0	0	96	7	6.79612
G6PC3	0	genome.wustl.edu	37	17	42153276	42153276	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	42153276	42153276	C	-	DEL	G6PC3	ENST00000269097	human	ensembl	74_37	+1	known	frame_shift_del	c.906	p.P304fs	0.674	pirsf_Glucose-6-phosphatase	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase,pirsf_Glucose-6-phosphatase	-	no_errors	G6PC3	HGNC	ENSG00000141349				114	0	0	110	9	7.56303
GPATCH8	0	genome.wustl.edu	37	17	42478249	42478249	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	42478249	42478249	G	-	DEL	GPATCH8	ENST00000591680	human	ensembl	74_37	-1	known	frame_shift_del	c.1196	p.P399fs	1.000	NULL	pfam_G_patch_dom,pfam_Znf_C2H2_jaz,smart_G_patch_dom,pfscan_Znf_C2H2,pfscan_G_patch_dom	-	no_errors	GPATCH8	HGNC	ENSG00000186566				144	0	0	154	10	6.09756
MAPT	0	genome.wustl.edu	37	17	44061060	44061060	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	44061060	44061060	C	-	DEL	MAPT	ENST00000344290	human	ensembl	74_37	+1	known	frame_shift_del	c.890	p.L299fs	0.000	NULL	pfam_MAP_tubulin-bd_rpt,prints_Tau	-	no_errors	MAPT	HGNC	ENSG00000186868				56	0	0	47	8	14.5455
HOXB1	0	genome.wustl.edu	37	17	46607839	46607839	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	46607839	46607839	G	-	DEL	HOXB1	ENST00000239174	human	ensembl	74_37	-1	known	frame_shift_del	c.428	p.P143fs	0.030	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	HOXB1	HGNC	ENSG00000120094				71	0	0	68	12	15
COL1A1	0	genome.wustl.edu	37	17	48270162	48270162	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	48270162	48270162	G	-	DEL	COL1A1	ENST00000225964	human	ensembl	74_37	-1	known	frame_shift_del	c.1871	p.P624fs	1.000	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_VWF_C,superfamily_Fibrinogen_a/b/g_C_dom,smart_VWF_C,smart_Fib_collagen_C,pfscan_VWF_C	-	no_errors	COL1A1	HGNC	ENSG00000108821				46	0	0	41	9	18
XYLT2	0	genome.wustl.edu	37	17	48433967	48433967	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	48433967	48433967	C	-	DEL	XYLT2	ENST00000017003	human	ensembl	74_37	+1	known	frame_shift_del	c.1578	p.G529fs	1.000	pfam_XylT	pfam_XylT,pfam_Glyco_trans_14	-	no_errors	XYLT2	HGNC	ENSG00000015532				63	0	0	59	8	11.9403
ANKRD40	0	genome.wustl.edu	37	17	48776791	48776792	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	48776791	48776792	-	A	INS	ANKRD40	ENST00000285243	human	ensembl	74_37	-1	known	frame_shift_ins	c.747_746	p.F250fs	1.000:1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD40	HGNC	ENSG00000154945				156	0	0	133	13	8.90411
CAMTA2	0	genome.wustl.edu	37	17	4883808	4883808	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	4883808	4883808	G	-	DEL	CAMTA2	ENST00000414043	human	ensembl	74_37	-1	known	frame_shift_del	c.878	p.P293fs	0.997	NULL	pfam_CG-1_dom,pfam_IPT,pfam_IQ_motif_EF-hand-BS,superfamily_Ig_E-set,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	CAMTA2	HGNC	ENSG00000108509				88	0	0	98	13	11.7117
EPX	0	genome.wustl.edu	37	17	56276962	56276962	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	56276962	56276962	G	-	DEL	EPX	ENST00000225371	human	ensembl	74_37	+1	known	frame_shift_del	c.1344	p.H450fs	1.000	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	-	no_errors	EPX	HGNC	ENSG00000121053				78	0	0	69	7	9.21053
RNF43	0	genome.wustl.edu	37	17	56435161	56435161	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	56435161	56435161	C	-	DEL	RNF43	ENST00000407977	human	ensembl	74_37	-1	known	frame_shift_del	c.1976	p.G659fs	0.900	NULL	pfam_Znf_C3HC4_RING-type,superfamily_PAS,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF43	HGNC	ENSG00000108375				148	0	0	118	16	11.9403
RPS6KB1	0	genome.wustl.edu	37	17	58011797	58011797	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	58011797	58011797	C	-	DEL	RPS6KB1	ENST00000225577	human	ensembl	74_37	+1	known	frame_shift_del	c.782	p.P262fs	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ribosomal_S6_kinase,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase,pfscan_Prot_kinase_dom	-	no_errors	RPS6KB1	HGNC	ENSG00000108443				89	0	0	60	6	9.09091
HEATR6	0	genome.wustl.edu	37	17	58143674	58143675	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	58143674	58143675	-	T	INS	HEATR6	ENST00000184956	human	ensembl	74_37	-1	known	frame_shift_ins	c.1312_1311	p.V437fs	1.000:1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	HEATR6	HGNC	ENSG00000068097				102	0	0	55	12	17.9104
DDX42	0	genome.wustl.edu	37	17	61877936	61877936	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	61877936	61877936	A	-	DEL	DDX42	ENST00000389924	human	ensembl	74_37	+1	known	frame_shift_del	c.580	p.I196fs	1.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX42	HGNC	ENSG00000198231				126	1	0.787402	84	20	19.2308
ERN1	0	genome.wustl.edu	37	17	62149457	62149457	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	62149457	62149457	T	-	DEL	ERN1	ENST00000433197	human	ensembl	74_37	-1	known	frame_shift_del	c.362	p.K121fs	1.000	superfamily_Quinonprotein_ADH-like_supfam,smart_PQQ_beta_propeller_repeat	pfam_Prot_kinase_dom,pfam_KEN_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Quinonprotein_ADH-like_supfam,smart_PQQ_beta_propeller_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PUG-dom,pfscan_Prot_kinase_dom	-	no_errors	ERN1	HGNC	ENSG00000178607				44	0	0	36	6	14.2857
BPTF	0	genome.wustl.edu	37	17	65899951	65899951	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	65899951	65899951	A	-	DEL	BPTF	ENST00000321892	human	ensembl	74_37	+1	known	frame_shift_del	c.2968	p.E993fs	0.993	NULL	pfam_Bromodomain,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BPTF	HGNC	ENSG00000171634				71	0	0	33	9	21.4286
ABCA6	0	genome.wustl.edu	37	17	67125767	67125767	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	67125767	67125767	A	-	DEL	ABCA6	ENST00000284425	human	ensembl	74_37	-1	known	frame_shift_del	c.917	p.L306fs	1.000	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA6	HGNC	ENSG00000154262				153	0	0	66	22	25
ABCA5	0	genome.wustl.edu	37	17	67246059	67246059	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	67246059	67246059	A	-	DEL	ABCA5	ENST00000392677	human	ensembl	74_37	-1	known	frame_shift_del	c.4755	p.F1585fs	1.000	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA5	HGNC	ENSG00000154265				97	0	0	56	7	11.1111
KCNJ2	0	genome.wustl.edu	37	17	68172387	68172387	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	68172387	68172387	C	-	DEL	KCNJ2	ENST00000243457	human	ensembl	74_37	+1	known	frame_shift_del	c.1207	p.P404fs	0.930	pirsf_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir,pfam_K_chnl_inward-rec_Kir_N,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir2.1	-	no_errors	KCNJ2	HGNC	ENSG00000123700				119	0	0	133	8	5.67376
BCL6B	0	genome.wustl.edu	37	17	6927858	6927858	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	6927858	6927858	C	-	DEL	BCL6B	ENST00000293805	human	ensembl	74_37	+1	known	frame_shift_del	c.540	p.S183fs	0.003	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	BCL6B	HGNC	ENSG00000161940				130	0	0	115	24	17.2662
YBX2	0	genome.wustl.edu	37	17	7193637	7193637	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	7193637	7193637	G	-	DEL	YBX2	ENST00000007699	human	ensembl	74_37	-1	known	frame_shift_del	c.677	p.P226fs	0.892	NULL	pfam_CSP_DNA-bd,superfamily_NA-bd_OB-fold,smart_Cold_shock_prot,prints_CSP_DNA-bd	-	no_errors	YBX2	HGNC	ENSG00000006047				177	0	0	197	16	7.51174
KCTD2	0	genome.wustl.edu	37	17	73058330	73058330	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	73058330	73058330	A	-	DEL	KCTD2	ENST00000322444	human	ensembl	74_37	+1	known	frame_shift_del	c.752	p.K252fs	1.000	NULL	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	-	no_errors	KCTD2	HGNC	ENSG00000180901				70	0	0	54	12	18.1818
GRB2	0	genome.wustl.edu	37	17	73316467	73316467	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	73316467	73316467	G	-	DEL	GRB2	ENST00000316804	human	ensembl	74_37	-1	known	frame_shift_del	c.636	p.V213fs	0.001	superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain	pfam_SH3_domain,pfam_SH3_2,pfam_SH2,pfam_SH3-like_bac-type,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,pfscan_SH2,pfscan_SH3_domain,prints_SH2,prints_SH3_domain,prints_p67phox	-	no_errors	GRB2	HGNC	ENSG00000177885				386	1	0.258398	292	46	13.6095
KIAA0195	0	genome.wustl.edu	37	17	73484878	73484878	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	73484878	73484878	C	-	DEL	KIAA0195	ENST00000314256	human	ensembl	74_37	+1	known	frame_shift_del	c.651	p.F220fs	1.000	NULL	pfam_ATPase_P-typ_cation-transptr_C	-	no_errors	KIAA0195	HGNC	ENSG00000177728				79	0	0	82	15	15.4639
KIAA0195	0	genome.wustl.edu	37	17	73491388	73491390	+	In_Frame_Del	DEL	CTC	CTC	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	73491388	73491390	CTC	-	DEL	KIAA0195	ENST00000314256	human	ensembl	74_37	+1	known	in_frame_del	c.2752_2754	p.L920in_frame_del	1.000:1.000:0.839	NULL	pfam_ATPase_P-typ_cation-transptr_C	-	no_errors	KIAA0195	HGNC	ENSG00000177728				29	0	0	29	9	23.6842
ITGB4	0	genome.wustl.edu	37	17	73746239	73746239	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	73746239	73746239	C	-	DEL	ITGB4	ENST00000200181	human	ensembl	74_37	+1	known	frame_shift_del	c.3364	p.P1123fs	0.000	pirsf_Integrin_bsu-4,superfamily_Fibronectin_type3	pirsf_Integrin_bsu-4,pfam_Integrin_bsu_N,pfam_Fibronectin_type3,pfam_Calx_beta,pfam_Integrin_bsu_tail,pfam_EGF_extracell,superfamily_Fibronectin_type3,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like_fold,smart_Integrin_bsu_N,smart_Calx_beta,smart_Fibronectin_type3,prints_Integrin_bsu,pfscan_Fibronectin_type3	-	no_errors	ITGB4	HGNC	ENSG00000132470				64	0	0	77	12	13.4831
RNF157	0	genome.wustl.edu	37	17	74208459	74208460	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	74208459	74208460	-	C	INS	RNF157	ENST00000269391	human	ensembl	74_37	-1	known	frame_shift_ins	c.193_192	p.N64fs	1.000:0.998	NULL	smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF157	HGNC	ENSG00000141576				112	0	0	85	22	20.5607
UBE2O	0	genome.wustl.edu	37	17	74392741	74392741	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	74392741	74392741	G	-	DEL	UBE2O	ENST00000319380	human	ensembl	74_37	-1	known	frame_shift_del	c.2277	p.I760fs	0.993	NULL	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	-	no_errors	UBE2O	HGNC	ENSG00000175931				106	0	0	85	13	13.2653
SRSF2	0	genome.wustl.edu	37	17	74732956	74732956	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	74732956	74732956	G	-	DEL	SRSF2	ENST00000359995	human	ensembl	74_37	-1	known	frame_shift_del	c.287	p.P96fs	0.326	NULL	pfam_RRM_dom,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	SRSF2	HGNC	ENSG00000161547				33	0	0	26	7	21.2121
SEC14L1	0	genome.wustl.edu	37	17	75196699	75196699	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	75196699	75196699	C	-	DEL	SEC14L1	ENST00000392476	human	ensembl	74_37	+1	known	frame_shift_del	c.953	p.P319fs	0.890	superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	pfam_PRELI/MSF1,pfam_CRAL-TRIO_dom,pfam_CRAL/TRIO_N_dom,superfamily_CRAL-TRIO_dom,superfamily_CRAL/TRIO_N_dom,superfamily_GOLD,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_GOLD,pfscan_PRELI/MSF1	-	no_errors	SEC14L1	HGNC	ENSG00000129657				139	0	0	121	8	6.20155
DNAH2	0	genome.wustl.edu	37	17	7697597	7697598	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	7697597	7697598	-	C	INS	DNAH2	ENST00000389173	human	ensembl	74_37	+1	known	frame_shift_ins	c.7595_7596	p.G2535fs	1.000:0.949	pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH2	HGNC	ENSG00000183914				79	0	0	103	7	6.36364
CHD3	0	genome.wustl.edu	37	17	7798765	7798765	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	7798765	7798765	C	-	DEL	CHD3	ENST00000330494	human	ensembl	74_37	+1	known	frame_shift_del	c.1612	p.R540fs	0.007	superfamily_Chromodomain-like,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow	pfam_CHD_C2,pfam_SNF2_N,pfam_DUF1086,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD3	HGNC	ENSG00000170004				94	0	0	116	7	5.69106
ARL16	0	genome.wustl.edu	37	17	79650094	79650094	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	79650094	79650094	C	-	DEL	ARL16	ENST00000397498	human	ensembl	74_37	-1	known	frame_shift_del	c.255	p.C86fs	0.326	pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_ARF,smart_Small_GTPase_SAR1	pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_ARF,smart_Small_GTPase_SAR1	-	no_errors	ARL16	HGNC	ENSG00000214087				193	0	0	175	31	15.0485
RAB40B	0	genome.wustl.edu	37	17	80615786	80615786	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	80615786	80615786	G	-	DEL	RAB40B	ENST00000571995	human	ensembl	74_37	-1	known	frame_shift_del	c.790	p.Q264fs	1.000	NULL	pfam_Small_GTPase,pfam_MIRO-like,pfam_SOCS_C,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,smart_SOCS_C,pfscan_SOCS_C,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB40B	HGNC	ENSG00000141542				187	0	0	154	33	17.6471
MYH10	0	genome.wustl.edu	37	17	8526464	8526464	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	17	8526464	8526464	T	-	DEL	MYH10	ENST00000396239	human	ensembl	74_37	-1	known	frame_shift_del	c.101	p.K34fs	1.000	pfam_Myosin_N	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_HR1_rho-bd,superfamily_UBA-like,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH10	HGNC	ENSG00000133026				200	0	0	158	34	17.7083
CEP192	0	genome.wustl.edu	37	18	13089513	13089514	+	Frame_Shift_Del	DEL	CA	CA	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	13089513	13089514	CA	-	DEL	CEP192	ENST00000506447	human	ensembl	74_37	+1	known	frame_shift_del	c.6052_6053	p.Q2018fs	0.362:0.348	NULL	NULL	-	no_errors	CEP192	HGNC	ENSG00000101639				83	0	0	55	7	11.2903
FAM210A	0	genome.wustl.edu	37	18	13681751	13681751	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	13681751	13681751	T	-	DEL	FAM210A	ENST00000322247	human	ensembl	74_37	-1	known	frame_shift_del	c.326	p.K109fs	0.991	NULL	pfam_DUF1279	-	no_errors	FAM210A	HGNC	ENSG00000177150				246	0	0	202	12	5.60748
RNMT	0	genome.wustl.edu	37	18	13746253	13746253	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	13746253	13746253	A	-	DEL	RNMT	ENST00000262173	human	ensembl	74_37	+1	known	frame_shift_del	c.1174	p.T394fs	1.000	pfam_mRNA_G-N7_MeTrfase_dom,pirsf_mRNA_G-N7_MeTrfase	pfam_mRNA_G-N7_MeTrfase_dom,pfam_Methyltransf_11,pirsf_mRNA_G-N7_MeTrfase	-	no_errors	RNMT	HGNC	ENSG00000101654				115	0	0	69	8	10.3896
USP14	0	genome.wustl.edu	37	18	209989	209989	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	209989	209989	C	-	DEL	USP14	ENST00000261601	human	ensembl	74_37	+1	known	frame_shift_del	c.1183	p.Q396fs	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,smart_Ubiquitin_dom,pfscan_Peptidase_C19/C67,pfscan_Ubiquitin_supergroup	-	no_errors	USP14	HGNC	ENSG00000101557				82	0	0	69	8	10.3896
DSC3	0	genome.wustl.edu	37	18	28586996	28586996	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	28586996	28586996	T	-	DEL	DSC3	ENST00000360428	human	ensembl	74_37	-1	known	frame_shift_del	c.1765	p.M589fs	0.299	superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Cadherin/Desmocollin,prints_Desmosomal_cadherin	-	no_errors	DSC3	HGNC	ENSG00000134762				86	0	0	67	15	18.2927
KLHL14	0	genome.wustl.edu	37	18	30349862	30349862	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	30349862	30349862	G	-	DEL	KLHL14	ENST00000359358	human	ensembl	74_37	-1	known	frame_shift_del	c.693	p.V232fs	0.982	pfam_BACK,smart_BACK,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL14	HGNC	ENSG00000197705				38	0	0	32	11	25.5814
CCDC178	0	genome.wustl.edu	37	18	30804894	30804895	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	30804894	30804895	-	T	INS	CCDC178	ENST00000406524	human	ensembl	74_37	-1	known	frame_shift_ins	c.1663_1662	p.L554fs	0.000:0.000	NULL	NULL	-	no_errors	CCDC178	HGNC	ENSG00000166960				120	0	0	77	6	7.22892
CCDC178	0	genome.wustl.edu	37	18	30806795	30806796	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	30806795	30806796	-	T	INS	CCDC178	ENST00000406524	human	ensembl	74_37	-1	known	frame_shift_ins	c.1618_1617	p.L539fs	0.021:0.017	NULL	NULL	-	no_errors	CCDC178	HGNC	ENSG00000166960				103	0	0	65	5	7.14286
ZBTB7C	0	genome.wustl.edu	37	18	45566518	45566519	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	45566518	45566519	-	C	INS	ZBTB7C	ENST00000332053	human	ensembl	74_37	-1	known	frame_shift_ins	c.961_960	p.P320fs	1.000:0.989	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB7C	HGNC	ENSG00000184828				82	0	0	74	21	22.1053
CTIF	0	genome.wustl.edu	37	18	46284653	46284654	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	46284653	46284654	-	G	INS	CTIF	ENST00000382998	human	ensembl	74_37	+1	known	frame_shift_ins	c.948_949	p.P318fs	0.410:0.658	NULL	pfam_MIF4G-like_typ-3,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3	-	no_errors	CTIF	HGNC	ENSG00000134030				112	0	0	110	14	11.2903
WDR7	0	genome.wustl.edu	37	18	54358513	54358513	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	54358513	54358513	G	-	DEL	WDR7	ENST00000254442	human	ensembl	74_37	+1	known	frame_shift_del	c.784	p.D264fs	1.000	superfamily_Quinonprotein_ADH-like_supfam	pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like_supfam,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR7	HGNC	ENSG00000091157				186	0	0	150	9	5.66038
CPLX4	0	genome.wustl.edu	37	18	56979972	56979972	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	56979972	56979972	T	-	DEL	CPLX4	ENST00000299721	human	ensembl	74_37	-1	known	frame_shift_del	c.200	p.K67fs	1.000	pfam_Synaphin	pfam_Synaphin	-	no_errors	CPLX4	HGNC	ENSG00000166569				98	0	0	74	8	9.7561
PIGN	0	genome.wustl.edu	37	18	59777146	59777147	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	59777146	59777147	-	A	INS	PIGN	ENST00000357637	human	ensembl	74_37	-1	known	frame_shift_ins	c.1495_1494	p.L498fs	1.000:1.000	pfam_GPI_EtnP_transferase_1_C	pfam_GPI_EtnP_transferase_1_C,pfam_Phosphodiest/P_Trfase,pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	-	no_errors	PIGN	HGNC	ENSG00000197563				197	0	0	119	29	19.5946
VPS4B	0	genome.wustl.edu	37	18	61067828	61067829	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	61067828	61067829	-	A	INS	VPS4B	ENST00000238497	human	ensembl	74_37	-1	known	frame_shift_ins	c.593_592	p.S198fs	1.000:1.000	pfam_ATPase_AAA_core,pfam_IstB_ATP-bd,pfam_ATPase_dyneun-rel_AAA,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_ATPase_AAA_core,pfam_Vps4_C,pfam_MIT,pfam_IstB_ATP-bd,pfam_ATPase_dyneun-rel_AAA,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_P-loop_NTPase,smart_MIT,smart_AAA+_ATPase	-	no_errors	VPS4B	HGNC	ENSG00000119541				98	0	0	62	15	19.4805
SERPINB7	0	genome.wustl.edu	37	18	61460422	61460423	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	61460422	61460423	-	T	INS	SERPINB7	ENST00000336429	human	ensembl	74_37	+1	known	frame_shift_ins	c.247_248	p.S85fs	0.120:0.157	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINB7	HGNC	ENSG00000166396				87	0	0	72	7	8.86076
RTTN	0	genome.wustl.edu	37	18	67697249	67697249	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	67697249	67697249	T	-	DEL	RTTN	ENST00000255674	human	ensembl	74_37	-1	known	frame_shift_del	c.5744	p.K1915fs	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	RTTN	HGNC	ENSG00000176225				140	1	0.70922	122	11	8.27068
CBLN2	0	genome.wustl.edu	37	18	70205945	70205945	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	70205945	70205945	T	-	DEL	CBLN2	ENST00000269503	human	ensembl	74_37	-1	known	frame_shift_del	c.420	p.I142fs	1.000	pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	CBLN2	HGNC	ENSG00000141668				104	0	0	82	10	10.8696
TSHZ1	0	genome.wustl.edu	37	18	72998442	72998443	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	18	72998442	72998443	-	C	INS	TSHZ1	ENST00000580243	human	ensembl	74_37	+1	known	frame_shift_ins	c.1080_1081	p.C362fs	0.877:0.898	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	TSHZ1	HGNC	ENSG00000179981				60	0	0	46	8	14.8148
DNMT1	0	genome.wustl.edu	37	19	10271067	10271068	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	10271067	10271068	-	G	INS	DNMT1	ENST00000359526	human	ensembl	74_37	-1	known	frame_shift_ins	c.1036_1035	p.K345fs	0.665:0.576	pirsf_DNA_C5-MeTrfase_1_euk	pirsf_DNA_C5-MeTrfase_1_euk,pfam_C5_MeTfrase,pfam_BAH_dom,pfam_Cytosine_MeTrfase1_RFD,pfam_DMAP1-bd,pfam_Znf_CXXC,smart_BAH_dom,prints_C5_MeTfrase,pfscan_BAH_dom,pfscan_Znf_CXXC	-	no_errors	DNMT1	HGNC	ENSG00000130816				66	0	0	50	13	20.6349
ZNF878	0	genome.wustl.edu	37	19	12155708	12155709	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	12155708	12155709	-	T	INS	ZNF878	ENST00000602107	human	ensembl	74_37	-1	known	frame_shift_ins	c.649_648	p.P216fs	0.155:0.168	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF878	HGNC	ENSG00000257446				337	0	0	233	54	18.8153
ZNF136	0	genome.wustl.edu	37	19	12296931	12296931	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	12296931	12296931	A	-	DEL	ZNF136	ENST00000343979	human	ensembl	74_37	+1	known	frame_shift_del	c.133	p.K46fs	0.002	superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF136	HGNC	ENSG00000196646				54	0	0	20	7	25.9259
C19orf26	0	genome.wustl.edu	37	19	1231197	1231197	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	1231197	1231197	G	-	DEL	C19orf26	ENST00000382477	human	ensembl	74_37	-1	known	frame_shift_del	c.1117	p.Q373fs	0.957	NULL	NULL	-	no_errors	C19orf26	HGNC	ENSG00000099625				74	0	0	78	7	8.23529
ZNF442	0	genome.wustl.edu	37	19	12460857	12460857	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	12460857	12460857	T	-	DEL	ZNF442	ENST00000242804	human	ensembl	74_37	-1	known	frame_shift_del	c.1542	p.K514fs	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF442	HGNC	ENSG00000198342				151	0	0	127	11	7.97101
CACNA1A	0	genome.wustl.edu	37	19	13414640	13414640	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	13414640	13414640	C	-	DEL	CACNA1A	ENST00000360228	human	ensembl	74_37	-1	known	frame_shift_del	c.2045	p.G682fs	1.000	pfam_Ion_trans_dom,pfam_PKD1_2_channel	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_P/Q_a1su	-	no_errors	CACNA1A	HGNC	ENSG00000141837				206	0	0	206	11	5.06912
CHERP	0	genome.wustl.edu	37	19	16633994	16633994	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	16633994	16633994	G	-	DEL	CHERP	ENST00000546361	human	ensembl	74_37	-1	known	frame_shift_del	c.1849	p.H617fs	0.998	NULL	pfam_Surp,pfam_G_patch_dom,pfam_RNA_pol_II-bd,superfamily_Surp,superfamily_ENTH_VHS,smart_Surp,smart_G_patch_dom,pfscan_Surp,pfscan_G_patch_dom	-	no_errors	CHERP	HGNC	ENSG00000085872				110	0	0	95	17	15.1786
OCEL1	0	genome.wustl.edu	37	19	17337542	17337542	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	17337542	17337542	C	-	DEL	OCEL1	ENST00000215061	human	ensembl	74_37	+1	known	frame_shift_del	c.110	p.R39fs	0.001	NULL	pfam_Occludin_RNApol2_elong_fac_ELL	-	no_errors	OCEL1	HGNC	ENSG00000099330				11	0	0	11	2	15.3846
ANKLE1	0	genome.wustl.edu	37	19	17394488	17394488	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	17394488	17394488	C	-	DEL	ANKLE1	ENST00000394458	human	ensembl	74_37	+1	known	frame_shift_del	c.915	p.P307fs	0.000	NULL	pfam_Ankyrin_rpt,pfam_LEM_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_LEM/LEM-like_dom,superfamily_Lactate_DH/Glyco_Ohase_4_C,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_LEM_dom	-	no_errors	ANKLE1	HGNC	ENSG00000160117				80	0	0	63	9	12.5
CRTC1	0	genome.wustl.edu	37	19	18887992	18887993	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	18887992	18887993	-	C	INS	CRTC1	ENST00000338797	human	ensembl	74_37	+1	known	frame_shift_ins	c.1753_1754	p.S588fs	1.000:1.000	NULL	NULL	-	no_errors	CRTC1	HGNC	ENSG00000105662				40	0	0	48	9	15.7895
TMEM161A	0	genome.wustl.edu	37	19	19231817	19231817	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	19231817	19231817	C	-	DEL	TMEM161A	ENST00000162044	human	ensembl	74_37	-1	known	frame_shift_del	c.1073	p.R358fs	0.712	pfam_Transmembrane_161A/B	pfam_Transmembrane_161A/B	-	no_errors	TMEM161A	HGNC	ENSG00000064545				51	0	0	47	9	16.0714
ZNF626	0	genome.wustl.edu	37	19	20808338	20808338	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	20808338	20808338	T	-	DEL	ZNF626	ENST00000601440	human	ensembl	74_37	-1	known	frame_shift_del	c.345	p.G116fs	0.003	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF626	HGNC	ENSG00000188171				164	0	0	85	18	17.4757
ZNF43	0	genome.wustl.edu	37	19	21992491	21992491	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	21992491	21992491	T	-	DEL	ZNF43	ENST00000354959	human	ensembl	74_37	-1	known	frame_shift_del	c.348	p.D117fs	0.003	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF43	HGNC	ENSG00000198521				159	1	0.625	127	10	7.29927
ZNF676	0	genome.wustl.edu	37	19	22364272	22364272	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	22364272	22364272	T	-	DEL	ZNF676	ENST00000397121	human	ensembl	74_37	-1	known	frame_shift_del	c.247	p.I83fs	0.044	NULL	pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF676	HGNC	ENSG00000196109				135	0	0	100	6	5.66038
C19orf35	0	genome.wustl.edu	37	19	2280883	2280883	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	2280883	2280883	G	-	DEL	C19orf35	ENST00000342063	human	ensembl	74_37	-1	known	frame_shift_del	c.48	p.T17fs	0.000	NULL	NULL	-	no_errors	C19orf35	HGNC	ENSG00000188305				25	0	0	35	7	16.6667
TMPRSS9	0	genome.wustl.edu	37	19	2405436	2405436	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	2405436	2405436	G	-	DEL	TMPRSS9	ENST00000332578	human	ensembl	74_37	+1	known	frame_shift_del	c.633	p.E213fs	0.000	pirsf_Pept_S1A_polyserase-1,pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pirsf_Pept_S1A_polyserase-1,pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,pfam_LDrepeatLR_classA_rpt,superfamily_Trypsin-like_Pept_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_LDrepeatLR_classA_rpt,pfscan_Peptidase_S1	-	no_errors	TMPRSS9	HGNC	ENSG00000178297				92	0	0	77	16	17.2043
TSHZ3	0	genome.wustl.edu	37	19	31769141	31769142	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	31769141	31769142	-	C	INS	TSHZ3	ENST00000240587	human	ensembl	74_37	-1	known	frame_shift_ins	c.1558_1557	p.L519fs	0.119:0.000	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	TSHZ3	HGNC	ENSG00000121297				223	0	0	193	11	5.39216
ARHGAP33	0	genome.wustl.edu	37	19	36276165	36276165	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	36276165	36276165	G	-	DEL	ARHGAP33	ENST00000007510	human	ensembl	74_37	+1	known	frame_shift_del	c.1796	p.G600fs	0.999	NULL	pfam_RhoGAP_dom,pfam_SH3_2,pfam_SH3_domain,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Phox,smart_SH3_domain,smart_RhoGAP_dom,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	ARHGAP33	HGNC	ENSG00000004777				62	0	0	59	5	7.8125
KIRREL2	0	genome.wustl.edu	37	19	36348058	36348062	+	Frame_Shift_Del	DEL	CTCTT	CTCTT	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	CTCTT	CTCTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	36348058	36348062	CTCTT	-	DEL	KIRREL2	ENST00000360202	human	ensembl	74_37	+1	known	frame_shift_del	c.37_41	p.F14fs	0.643:0.781:0.799:0.813:0.891	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	KIRREL2	HGNC	ENSG00000126259				39	0	0	49	10	16.9492
ZNF567	0	genome.wustl.edu	37	19	37209872	37209873	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	37209872	37209873	-	T	INS	ZNF567	ENST00000536254	human	ensembl	74_37	+1	known	frame_shift_ins	c.246_247	p.L83fs	0.954:0.641	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF567	HGNC	ENSG00000189042				131	0	0	73	8	9.87654
RYR1	0	genome.wustl.edu	37	19	38937348	38937349	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	38937348	38937349	-	G	INS	RYR1	ENST00000359596	human	ensembl	74_37	+1	known	frame_shift_ins	c.740_741	p.A250fs	1.000:0.996	pfam_MIR_motif,superfamily_MIR_motif,smart_MIR_motif,pfscan_MIR_motif	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif	-	no_errors	RYR1	HGNC	ENSG00000196218				82	0	0	89	7	7.29167
SAMD4B	0	genome.wustl.edu	37	19	39866351	39866351	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	39866351	39866351	C	-	DEL	SAMD4B	ENST00000314471	human	ensembl	74_37	+1	known	frame_shift_del	c.729	p.Q245fs	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM	-	no_errors	SAMD4B	HGNC	ENSG00000179134				199	0	0	242	17	6.56371
DYRK1B	0	genome.wustl.edu	37	19	40316612	40316612	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	40316612	40316612	G	-	DEL	DYRK1B	ENST00000323039	human	ensembl	74_37	-1	known	frame_shift_del	c.1633	p.Q545fs	0.436	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	DYRK1B	HGNC	ENSG00000105204				68	0	0	60	14	18.9189
MAP3K10	0	genome.wustl.edu	37	19	40715080	40715080	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	40715080	40715080	C	-	DEL	MAP3K10	ENST00000253055	human	ensembl	74_37	+1	known	frame_shift_del	c.1506	p.P504fs	1.000	pirsf_MAPKKK9/10/11	pirsf_MAPKKK9/10/11,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH3_2,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH3_domain,pfscan_SH3_domain,pfscan_Prot_kinase_dom	-	no_errors	MAP3K10	HGNC	ENSG00000130758				108	0	0	113	10	8.13008
AXL	0	genome.wustl.edu	37	19	41744385	41744385	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	41744385	41744385	C	-	DEL	AXL	ENST00000301178	human	ensembl	74_37	+1	known	frame_shift_del	c.1005	p.P337fs	0.997	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	AXL	HGNC	ENSG00000167601				68	0	0	59	12	16.9014
AXL	0	genome.wustl.edu	37	19	41765646	41765647	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	41765646	41765647	-	C	INS	AXL	ENST00000301178	human	ensembl	74_37	+1	known	frame_shift_ins	c.2522_2523	p.T844fs	0.990:0.824	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	AXL	HGNC	ENSG00000167601				44	0	0	42	7	14.2857
BCKDHA	0	genome.wustl.edu	37	19	41916544	41916544	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	41916544	41916544	C	-	DEL	BCKDHA	ENST00000595085	human	ensembl	74_37	+1	known	frame_shift_del	c.213	p.R74fs	0.000	NULL	pfam_DH_E1,pfam_Transketolase_N	-	no_errors	BCKDHA	HGNC	ENSG00000248098				47	0	0	58	6	9.375
CIC	0	genome.wustl.edu	37	19	42791268	42791268	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	42791268	42791268	C	-	DEL	CIC	ENST00000575354	human	ensembl	74_37	+1	known	frame_shift_del	c.328	p.P111fs	1.000	NULL	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	CIC	HGNC	ENSG00000079432				57	0	0	47	12	20.339
CIC	0	genome.wustl.edu	37	19	42799098	42799098	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	42799098	42799098	C	-	DEL	CIC	ENST00000575354	human	ensembl	74_37	+1	known	frame_shift_del	c.4582	p.P1529fs	0.722	NULL	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	CIC	HGNC	ENSG00000079432				35	0	0	37	5	11.9048
CD3EAP	0	genome.wustl.edu	37	19	45911723	45911723	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	45911723	45911723	C	-	DEL	CD3EAP	ENST00000589804	human	ensembl	74_37	+1	known	frame_shift_del	c.503	p.N170fs	0.000	pfam_DNA-dir_RNA_pol1_su_RPA34	pfam_DNA-dir_RNA_pol1_su_RPA34	-	no_errors	CD3EAP	HGNC	ENSG00000117877				69	0	0	63	13	17.1053
CD3EAP	0	genome.wustl.edu	37	19	45912198	45912199	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	45912198	45912199	-	C	INS	CD3EAP	ENST00000589804	human	ensembl	74_37	+1	known	frame_shift_ins	c.978_979	p.T328fs	0.000:0.002	NULL	pfam_DNA-dir_RNA_pol1_su_RPA34	-	no_errors	CD3EAP	HGNC	ENSG00000117877				120	0	0	124	7	5.34351
ZC3H4	0	genome.wustl.edu	37	19	47570462	47570462	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	47570462	47570462	G	-	DEL	ZC3H4	ENST00000253048	human	ensembl	74_37	-1	known	frame_shift_del	c.3063	p.N1022fs	0.812	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H4	HGNC	ENSG00000130749				58	0	0	34	6	15
GLTSCR1	0	genome.wustl.edu	37	19	48197715	48197715	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	48197715	48197715	C	-	DEL	GLTSCR1	ENST00000396720	human	ensembl	74_37	+1	known	frame_shift_del	c.2627	p.H878fs	0.968	NULL	NULL	-	no_errors	GLTSCR1	HGNC	ENSG00000063169				12	0	0	5	3	37.5
CABP5	0	genome.wustl.edu	37	19	48537535	48537535	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	48537535	48537535	G	-	DEL	CABP5	ENST00000293255	human	ensembl	74_37	-1	known	frame_shift_del	c.433	p.R145fs	0.088	pfscan_EF_hand_dom	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	CABP5	HGNC	ENSG00000105507				42	0	0	39	10	20.4082
RUVBL2	0	genome.wustl.edu	37	19	49518943	49518946	+	Frame_Shift_Del	DEL	AGTA	AGTA	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	AGTA	AGTA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	49518943	49518946	AGTA	-	DEL	RUVBL2	ENST00000595090	human	ensembl	74_37	+1	known	frame_shift_del	c.1366	p.G457fs	1.000	NULL	pfam_TIP49_C,pfam_ATPase_AAA_core,pfam_DNA_helicase_DnaB-like_C,superfamily_P-loop_NTPase,superfamily_NA-bd_OB-fold,smart_AAA+_ATPase,prints_DNA_repair_RadA	-	no_errors	RUVBL2	HGNC	ENSG00000183207				47	0	0	50	10	16.6667
PPFIA3	0	genome.wustl.edu	37	19	49649227	49649229	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	GAG	GAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	49649227	49649229	GAG	-	DEL	PPFIA3	ENST00000334186	human	ensembl	74_37	+1	known	in_frame_del	c.2773_2775	p.E926in_frame_del	1.000:1.000:0.996	NULL	pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	PPFIA3	HGNC	ENSG00000177380				67	0	0	41	8	16.3265
SCAF1	0	genome.wustl.edu	37	19	50158042	50158042	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	50158042	50158042	C	-	DEL	SCAF1	ENST00000360565	human	ensembl	74_37	+1	known	frame_shift_del	c.3533	p.T1181fs	0.934	NULL	NULL	-	no_errors	SCAF1	HGNC	ENSG00000126461				33	0	0	47	11	18.9655
SIGLEC12	0	genome.wustl.edu	37	19	52004836	52004836	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	52004836	52004836	T	-	DEL	SIGLEC12	ENST00000291707	human	ensembl	74_37	-1	known	frame_shift_del	c.152	p.N51fs	0.000	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_Ig_I-set,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	SIGLEC12	HGNC	ENSG00000254521				68	0	0	72	5	6.49351
FPR3	0	genome.wustl.edu	37	19	52327875	52327875	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	52327875	52327875	T	-	DEL	FPR3	ENST00000339223	human	ensembl	74_37	+1	known	frame_shift_del	c.874	p.F293fs	0.999	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Formyl_pep_rcpt,prints_GPCR_Rhodpsn,prints_Anphylx_rcpt	-	no_errors	FPR3	HGNC	ENSG00000187474				260	0	0	154	46	23
ZNF616	0	genome.wustl.edu	37	19	52618188	52618188	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	52618188	52618188	T	-	DEL	ZNF616	ENST00000600228	human	ensembl	74_37	-1	known	frame_shift_del	c.2229	p.K743fs	0.924	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF616	HGNC	ENSG00000204611				130	0	0	126	10	7.35294
ZNF808	0	genome.wustl.edu	37	19	53057692	53057692	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	53057692	53057692	A	-	DEL	ZNF808	ENST00000359798	human	ensembl	74_37	+1	known	frame_shift_del	c.1523	p.K509fs	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF808	HGNC	ENSG00000198482				191	0	0	160	9	5.32544
TMC4	0	genome.wustl.edu	37	19	54675768	54675769	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	54675768	54675769	-	C	INS	TMC4	ENST00000301187	human	ensembl	74_37	-1	known	frame_shift_ins	c.164_163	p.A55fs	0.001:0.013	NULL	pfam_TMC	-	no_errors	TMC4	HGNC	ENSG00000167608				53	0	0	70	7	9.09091
KIR2DL4	0	genome.wustl.edu	37	19	55324675	55324675	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	55324675	55324675	A	-	DEL	KIR2DL4	ENST00000396284	human	ensembl	74_37	+1	known	frame_shift_del	c.796	p.V269fs	0.003	NULL	pfam_Immunoglobulin,smart_Ig_sub	-	no_errors	KIR2DL4	HGNC	ENSG00000189013				31	0	0	21	7	25
NLRP11	0	genome.wustl.edu	37	19	56303730	56303730	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	56303730	56303730	T	-	DEL	NLRP11	ENST00000443188	human	ensembl	74_37	-1	known	frame_shift_del	c.2450	p.N817fs	0.000	NULL	pfam_DAPIN,superfamily_DEATH-like_dom,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP11	HGNC	ENSG00000179873				169	0	0	126	24	16
PEG3	0	genome.wustl.edu	37	19	57327156	57327156	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	57327156	57327156	C	-	DEL	PEG3	ENST00000326441	human	ensembl	74_37	-1	known	frame_shift_del	c.2654	p.G885fs	0.000	NULL	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	PEG3	HGNC	ENSG00000198300				109	0	0	103	7	6.36364
ZNF773	0	genome.wustl.edu	37	19	58018164	58018164	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	58018164	58018164	T	-	DEL	ZNF773	ENST00000282292	human	ensembl	74_37	+1	known	frame_shift_del	c.701	p.F235fs	0.548	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF773	HGNC	ENSG00000152439				96	0	0	56	18	24.3243
FGF22	0	genome.wustl.edu	37	19	643528	643528	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	643528	643528	G	-	DEL	FGF22	ENST00000215530	human	ensembl	74_37	+1	known	frame_shift_del	c.437	p.150fs	0.001	pfam_Fibroblast_GF_fam,superfamily_Cytokine_IL1-like,smart_Fibroblast_GF_fam	pfam_Fibroblast_GF_fam,superfamily_Cytokine_IL1-like,smart_Fibroblast_GF_fam,prints_Fibroblast_GF_fam,prints_IL-1_fam/FGF_fam	-	no_errors	FGF22	HGNC	ENSG00000070388				19	0	0	16	5	23.8095
DENND1C	0	genome.wustl.edu	37	19	6475582	6475582	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	6475582	6475582	T	-	DEL	DENND1C	ENST00000381480	human	ensembl	74_37	-1	known	frame_shift_del	c.840	p.A281fs	0.071	pfam_DENN_dom,smart_DENN_dom,pfscan_DENN_dom	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND1C	HGNC	ENSG00000205744				100	0	0	71	9	11.25
MUC16	0	genome.wustl.edu	37	19	9064309	9064310	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	9064309	9064310	-	G	INS	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	frame_shift_ins	c.23137_23136	p.S7712fs	0.000:0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				85	0	0	79	12	13.1868
MUC16	0	genome.wustl.edu	37	19	9077823	9077824	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	9077823	9077824	-	T	INS	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	frame_shift_ins	c.9623_9622	p.I3208fs	0.000:0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				264	0	0	211	16	7.04846
OR7D4	0	genome.wustl.edu	37	19	9325203	9325203	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	19	9325203	9325203	A	-	DEL	OR7D4	ENST00000308682	human	ensembl	74_37	-1	known	frame_shift_del	c.311	p.L104fs	0.002	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR7D4	HGNC	ENSG00000174667				86	0	0	65	12	15.5844
SNORD89	0	genome.wustl.edu	37	2	101889497	101889499	+	RNA	DEL	TCA	TCA	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	TCA	TCA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	101889497	101889499	TCA	-	DEL	SNORD89	ENST00000390981	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000:1.000:1.000	-	-	-	no_errors	SNORD89	HGNC	ENSG00000212283				95	0	0	93	5	5.10204
IL1R1	0	genome.wustl.edu	37	2	102781255	102781255	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	102781255	102781255	A	-	DEL	IL1R1	ENST00000233946	human	ensembl	74_37	+1	known	frame_shift_del	c.83	p.I30fs	0.000	smart_Ig_sub,prints_IL-1_rcpt_I-typ	pfam_TIR_dom,pfam_Ig_I-set,superfamily_TIR_dom,smart_Ig_sub,smart_TIR_dom,pfscan_TIR_dom,pfscan_Ig-like_dom,prints_IL-1_rcpt_I-typ,prints_IL-1_rcpt_I/II-typ	-	no_errors	IL1R1	HGNC	ENSG00000115594				58	0	0	19	12	38.7097
SLC9A4	0	genome.wustl.edu	37	2	103125345	103125345	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	103125345	103125345	A	-	DEL	SLC9A4	ENST00000295269	human	ensembl	74_37	+1	known	frame_shift_del	c.1441	p.T483fs	1.000	tigrfam_NaH_exchanger	pfam_Cation/H_exchanger,prints_NaH_exchanger,prints_Na/H_exchanger_2,tigrfam_NaH_exchanger	-	no_errors	SLC9A4	HGNC	ENSG00000180251				154	0	0	101	23	18.5484
TMEM182	0	genome.wustl.edu	37	2	103414435	103414435	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	103414435	103414435	G	-	DEL	TMEM182	ENST00000412401	human	ensembl	74_37	+1	known	frame_shift_del	c.445	p.G150fs	1.000	NULL	NULL	-	no_errors	TMEM182	HGNC	ENSG00000170417				163	0	0	121	12	9.02256
NOL10	0	genome.wustl.edu	37	2	10729348	10729348	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	10729348	10729348	T	-	DEL	NOL10	ENST00000381685	human	ensembl	74_37	-1	known	frame_shift_del	c.1665	p.A556fs	0.198	NULL	pfam_NUC153,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	NOL10	HGNC	ENSG00000115761				124	0	0	109	9	7.62712
GCC2	0	genome.wustl.edu	37	2	109087883	109087884	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	109087883	109087884	-	A	INS	GCC2	ENST00000309863	human	ensembl	74_37	+1	known	frame_shift_ins	c.2098_2099	p.Q703fs	0.998:1.000	NULL	pfam_GRIP,superfamily_GRIP,superfamily_tRNA-bd_arm,smart_GRIP,pfscan_GRIP	-	no_errors	GCC2	HGNC	ENSG00000135968				408	0	0	261	16	5.77617
GCC2	0	genome.wustl.edu	37	2	109087914	109087914	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	109087914	109087914	T	-	DEL	GCC2	ENST00000309863	human	ensembl	74_37	+1	known	frame_shift_del	c.2129	p.L712fs	0.000	NULL	pfam_GRIP,superfamily_GRIP,superfamily_tRNA-bd_arm,smart_GRIP,pfscan_GRIP	-	no_errors	GCC2	HGNC	ENSG00000135968				384	0	0	245	19	7.19697
RANBP2	0	genome.wustl.edu	37	2	109369546	109369546	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	109369546	109369546	A	-	DEL	RANBP2	ENST00000283195	human	ensembl	74_37	+1	known	frame_shift_del	c.1848	p.K618fs	0.998	NULL	pfam_Ran_bind_dom,pfam_Znf_RanBP2,pfam_IR1-M,pfam_Cyclophilin-like_PPIase_dom,pfam_TPR_1,superfamily_Cyclophilin-like_PPIase_dom,smart_TPR_repeat,smart_Ran_bind_dom,smart_Znf_RanBP2,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Znf_RanBP2,pfscan_Cyclophilin-like_PPIase_dom,pfscan_Ran_bind_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	RANBP2	HGNC	ENSG00000153201				416	0	0	301	26	7.95107
CCDC138	0	genome.wustl.edu	37	2	109421455	109421455	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	109421455	109421455	A	-	DEL	CCDC138	ENST00000295124	human	ensembl	74_37	+1	known	frame_shift_del	c.846	p.K284fs	0.996	NULL	NULL	-	no_errors	CCDC138	HGNC	ENSG00000163006				74	0	0	47	13	21.6667
SOWAHC	0	genome.wustl.edu	37	2	110373197	110373197	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	110373197	110373197	G	-	DEL	SOWAHC	ENST00000356454	human	ensembl	74_37	+1	known	frame_shift_del	c.1131	p.A378fs	0.981	superfamily_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	SOWAHC	HGNC	ENSG00000198142				51	0	0	41	12	22.6415
SLC20A1	0	genome.wustl.edu	37	2	113416607	113416608	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	113416607	113416608	AG	-	DEL	SLC20A1	ENST00000272542	human	ensembl	74_37	+1	known	frame_shift_del	c.984_985	p.R332fs	0.023:0.531	pfam_Phos_transporter	pfam_Phos_transporter	-	no_errors	SLC20A1	HGNC	ENSG00000144136				83	0	0	84	8	8.69565
RND3	0	genome.wustl.edu	37	2	151331469	151331469	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	151331469	151331469	G	-	DEL	RND3	ENST00000263895	human	ensembl	74_37	-1	known	frame_shift_del	c.268	p.L90fs	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RND3	HGNC	ENSG00000115963				101	0	0	67	8	10.6667
RIF1	0	genome.wustl.edu	37	2	152326345	152326345	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	152326345	152326345	A	-	DEL	RIF1	ENST00000243326	human	ensembl	74_37	+1	known	frame_shift_del	c.7062	p.K2356fs	0.991	NULL	pfam_Rif1_N,superfamily_ARM-type_fold	-	no_errors	RIF1	HGNC	ENSG00000080345				131	0	0	86	18	17.3077
NEB	0	genome.wustl.edu	37	2	152522612	152522613	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	152522612	152522613	-	A	INS	NEB	ENST00000397345	human	ensembl	74_37	-1	known	frame_shift_ins	c.5023_5022	p.Q1674fs	1.000:0.724	smart_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,pfscan_Nebulin_35r-motif,pfscan_SH3_domain,prints_Nebulin	-	no_errors	NEB	HGNC	ENSG00000183091				118	0	0	86	11	11.3402
NEB	0	genome.wustl.edu	37	2	152553966	152553966	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	152553966	152553966	T	-	DEL	NEB	ENST00000397345	human	ensembl	74_37	-1	known	frame_shift_del	c.1263	p.K421fs	1.000	smart_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,pfscan_Nebulin_35r-motif,pfscan_SH3_domain,prints_Nebulin	-	no_errors	NEB	HGNC	ENSG00000183091				151	0	0	118	10	7.8125
PRPF40A	0	genome.wustl.edu	37	2	153572534	153572534	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	153572534	153572534	G	-	DEL	PRPF40A	ENST00000410080	human	ensembl	74_37	-1	known	frame_shift_del	c.191	p.P64fs	1.000	NULL	pfam_FF_domain,pfam_WW_dom,superfamily_FF_domain,superfamily_WW_dom,smart_WW_dom,smart_FF_domain,pfscan_WW_dom,prints_Antifreeze_1	-	no_errors	PRPF40A	HGNC	ENSG00000196504				216	1	0.460829	164	10	5.74713
KCNJ3	0	genome.wustl.edu	37	2	155711679	155711679	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	155711679	155711679	A	-	DEL	KCNJ3	ENST00000295101	human	ensembl	74_37	+1	known	frame_shift_del	c.1360	p.T455fs	1.000	prints_K_chnl_inward-rec_Kir3.1	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir3.1,prints_K_chnl_inward-rec_Kir	-	no_errors	KCNJ3	HGNC	ENSG00000162989				94	0	0	80	7	8.04598
SCN3A	0	genome.wustl.edu	37	2	166011130	166011130	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	166011130	166011130	A	-	DEL	SCN3A	ENST00000283254	human	ensembl	74_37	-1	known	frame_shift_del	c.1212	p.F404fs	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,pfscan_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN3A	HGNC	ENSG00000153253				102	0	0	74	20	21.2766
NOSTRIN	0	genome.wustl.edu	37	2	169699539	169699539	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	169699539	169699539	A	-	DEL	NOSTRIN	ENST00000444448	human	ensembl	74_37	+1	known	frame_shift_del	c.542	p.K182fs	0.998	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_FCH_dom,superfamily_SH3_domain,superfamily_HR1_rho-bd,smart_SH3_domain,pfscan_FCH_dom,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	NOSTRIN	HGNC	ENSG00000163072				69	0	0	50	9	15.2542
GPR155	0	genome.wustl.edu	37	2	175326315	175326315	+	Splice_Site	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	175326315	175326315	C	-	DEL	GPR155	ENST00000295500	human	ensembl	74_37	-1	known	splice_site_del	c.1469+1	e7+1	1.000	-	-	-	no_errors	GPR155	HGNC	ENSG00000163328				188	0	0	114	20	14.9254
HOXD8	0	genome.wustl.edu	37	2	176995417	176995417	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	176995417	176995417	C	-	DEL	HOXD8	ENST00000313173	human	ensembl	74_37	+1	known	frame_shift_del	c.323	p.P110fs	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,prints_Homeobox_metazoa,pfscan_Homeobox_dom	-	no_errors	HOXD8	HGNC	ENSG00000175879				59	0	0	52	8	13.3333
HOXD8	0	genome.wustl.edu	37	2	176995458	176995458	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	176995458	176995458	C	-	DEL	HOXD8	ENST00000313173	human	ensembl	74_37	+1	known	frame_shift_del	c.364	p.C124fs	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,prints_Homeobox_metazoa,pfscan_Homeobox_dom	-	no_errors	HOXD8	HGNC	ENSG00000175879				163	0	0	142	11	7.18954
SMC6	0	genome.wustl.edu	37	2	17864968	17864968	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	17864968	17864968	T	-	DEL	SMC6	ENST00000381272	human	ensembl	74_37	-1	known	frame_shift_del	c.2819	p.K940fs	0.931	superfamily_P-loop_NTPase	superfamily_P-loop_NTPase	-	no_errors	SMC6	HGNC	ENSG00000163029				197	0	0	147	17	10.3659
FKBP7	0	genome.wustl.edu	37	2	179343217	179343217	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	179343217	179343217	T	-	DEL	FKBP7	ENST00000424785	human	ensembl	74_37	-1	known	frame_shift_del	c.10	p.T4fs	0.005	NULL	pfam_PPIase_FKBP_dom,pfscan_EF_hand_dom,pfscan_PPIase_FKBP_dom	-	no_errors	FKBP7	HGNC	ENSG00000079150				278	0	0	182	12	6.18557
TTN	0	genome.wustl.edu	37	2	179527715	179527716	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	179527715	179527716	-	T	INS	TTN	ENST00000342992	human	ensembl	74_37	-1	known	frame_shift_ins	c.31551_31550	p.P10518fs	0.000:0.000	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				125	0	0	102	8	7.27273
TMEFF2	0	genome.wustl.edu	37	2	192818525	192818525	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	192818525	192818525	T	-	DEL	TMEFF2	ENST00000272771	human	ensembl	74_37	-1	known	frame_shift_del	c.908	p.K303fs	1.000	NULL	pfam_Kazal_dom,smart_Kazal_dom,pfscan_EG-like_dom	-	no_errors	TMEFF2	HGNC	ENSG00000144339				95	0	0	99	6	5.71429
ANKRD44	0	genome.wustl.edu	37	2	197948166	197948166	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	197948166	197948166	C	-	DEL	ANKRD44	ENST00000328737	human	ensembl	74_37	-1	known	frame_shift_del	c.1309	p.A437fs	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD44	HGNC	ENSG00000065413				96	0	0	80	5	5.88235
SGOL2	0	genome.wustl.edu	37	2	201436289	201436289	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	201436289	201436289	A	-	DEL	SGOL2	ENST00000357799	human	ensembl	74_37	+1	known	frame_shift_del	c.1220	p.K409fs	0.134	NULL	NULL	-	no_errors	SGOL2	HGNC	ENSG00000163535				154	0	0	97	16	14.1593
AOX1	0	genome.wustl.edu	37	2	201501681	201501681	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	201501681	201501681	C	-	DEL	AOX1	ENST00000374700	human	ensembl	74_37	+1	known	frame_shift_del	c.2394	p.H799fs	1.000	pfam_AldOxase/xan_DH_Mopterin-bd,superfamily_AldOxase/xan_DH_Mopterin-bd,pirsf_Ald_Oxase/xanthine_DH,tigrfam_Aldehyde_oxidase	pfam_AldOxase/xan_DH_Mopterin-bd,pfam_Mopterin_DH_FAD-bd,pfam_Ald_Oxase/Xan_DH_a/b,pfam_2Fe-2S-bd,pfam_CO_DH_flav_C,pfam_2Fe-2S_ferredoxin-type,superfamily_AldOxase/xan_DH_Mopterin-bd,superfamily_FAD-bd_2,superfamily_Ald_Oxase/Xan_DH_a/b,superfamily_2Fe-2S-bd,superfamily_CO_DH_flav_C,superfamily_2Fe-2S_ferredoxin-type,pirsf_Ald_Oxase/xanthine_DH,pfscan_2Fe-2S_ferredoxin-type,tigrfam_Aldehyde_oxidase	-	no_errors	AOX1	HGNC	ENSG00000138356				81	0	0	65	6	8.4507
CRYGA	0	genome.wustl.edu	37	2	209025577	209025577	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	209025577	209025577	C	-	DEL	CRYGA	ENST00000304502	human	ensembl	74_37	-1	known	frame_shift_del	c.476	p.G159fs	0.651	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	CRYGA	HGNC	ENSG00000168582				136	0	0	126	10	7.35294
MAP2	0	genome.wustl.edu	37	2	210561667	210561667	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	210561667	210561667	A	-	DEL	MAP2	ENST00000360351	human	ensembl	74_37	+1	known	frame_shift_del	c.4414	p.T1474fs	1.000	pfam_MAP2_projctn	pfam_MAP2_projctn,pfam_MAP_tubulin-bd_rpt	-	no_errors	MAP2	HGNC	ENSG00000078018				80	0	0	37	17	31.4815
KANSL1L	0	genome.wustl.edu	37	2	211019062	211019062	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	211019062	211019062	A	-	DEL	KANSL1L	ENST00000281772	human	ensembl	74_37	-1	known	frame_shift_del	c.245	p.L82fs	1.000	NULL	NULL	-	no_errors	KANSL1L	HGNC	ENSG00000144445				148	0	0	89	9	9.18367
BARD1	0	genome.wustl.edu	37	2	215645635	215645635	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	215645635	215645635	T	-	DEL	BARD1	ENST00000260947	human	ensembl	74_37	-1	known	frame_shift_del	c.963	p.K321fs	0.133	NULL	pfam_Ankyrin_rpt,pfam_BRCT_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_BRCT_dom,smart_Ankyrin_rpt,smart_BRCT_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_BRCT_dom,pfscan_Znf_RING,prints_Ankyrin_rpt	-	no_errors	BARD1	HGNC	ENSG00000138376				140	0	0	100	11	9.90991
ABCA12	0	genome.wustl.edu	37	2	215855685	215855685	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	215855685	215855685	A	-	DEL	ABCA12	ENST00000272895	human	ensembl	74_37	-1	known	frame_shift_del	c.3365	p.L1122fs	0.942	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA12	HGNC	ENSG00000144452				127	0	0	94	8	7.84314
ABCB6	0	genome.wustl.edu	37	2	220083094	220083095	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	220083094	220083095	-	C	INS	ABCB6	ENST00000265316	human	ensembl	74_37	-1	known	frame_shift_ins	c.302_301	p.A101fs	0.001:0.000	NULL	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCB6	HGNC	ENSG00000115657				58	0	0	25	9	26.4706
TUBA4B	0	genome.wustl.edu	37	2	220136311	220136312	+	RNA	INS	-	-	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	220136311	220136312	-	C	INS	TUBA4B	ENST00000473885	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000:1.000	-	-	-	no_errors	TUBA4B	HGNC	ENSG00000243910				79	0	0	60	11	15.493
PTPRN	0	genome.wustl.edu	37	2	220166975	220166976	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	220166975	220166976	-	C	INS	PTPRN	ENST00000295718	human	ensembl	74_37	-1	known	frame_shift_ins	c.878_877	p.V293fs	0.007:0.020	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Receptor_IA-2,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRN	HGNC	ENSG00000054356				44	0	0	31	17	35.4167
PSMD1	0	genome.wustl.edu	37	2	231931680	231931680	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	231931680	231931680	A	-	DEL	PSMD1	ENST00000308696	human	ensembl	74_37	+1	known	frame_shift_del	c.365	p.K124fs	1.000	superfamily_ARM-type_fold,pirsf_26S_Psome_Rpn2	pfam_Proteasome/cyclosome_rpt,superfamily_ARM-type_fold,pirsf_26S_Psome_Rpn2	-	no_errors	PSMD1	HGNC	ENSG00000173692				30	0	0	18	6	25
EFHD1	0	genome.wustl.edu	37	2	233527580	233527580	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	233527580	233527580	C	-	DEL	EFHD1	ENST00000264059	human	ensembl	74_37	+1	known	frame_shift_del	c.371	p.Q126fs	1.000	pfscan_EF_hand_dom	smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	EFHD1	HGNC	ENSG00000115468				62	0	0	60	7	10.4478
UGT1A4	0	genome.wustl.edu	37	2	234628250	234628250	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	234628250	234628250	G	-	DEL	UGT1A4	ENST00000373409	human	ensembl	74_37	+1	known	frame_shift_del	c.784	p.V262fs	1.000	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT1A4	HGNC	ENSG00000244474				285	0	0	231	52	18.3746
TRPM8	0	genome.wustl.edu	37	2	234879010	234879010	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	234879010	234879010	C	-	DEL	TRPM8	ENST00000324695	human	ensembl	74_37	+1	known	frame_shift_del	c.2295	p.E768fs	0.000	NULL	pfam_Ion_trans_dom	-	no_errors	TRPM8	HGNC	ENSG00000144481				378	0	0	356	23	6.0686
LRRFIP1	0	genome.wustl.edu	37	2	238688132	238688132	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	238688132	238688132	A	-	DEL	LRRFIP1	ENST00000308482	human	ensembl	74_37	+1	putative	frame_shift_del	c.1880	p.M629fs	1.000	NULL	pfam_Leu-rich_rep_flightless-int_pr,superfamily_Prefoldin	-	no_errors	LRRFIP1	HGNC	ENSG00000124831				66	0	0	59	7	10.6061
HDAC4	0	genome.wustl.edu	37	2	240002822	240002823	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	240002822	240002823	-	G	INS	HDAC4	ENST00000345617	human	ensembl	74_37	-1	known	frame_shift_ins	c.2704_2703	p.M901fs	1.000:1.000	pfam_His_deacetylse_dom,pirsf_Histone_deAcase_II_euk	pfam_His_deacetylse_dom,pfam_Hist_deacetylase_Gln_rich_N,pfam_Arb2_domain,pirsf_Histone_deAcase_II_euk,prints_His_deacetylse	-	no_errors	HDAC4	HGNC	ENSG00000068024				47	0	0	46	6	11.5385
OTOF	0	genome.wustl.edu	37	2	26686909	26686909	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	26686909	26686909	G	-	DEL	OTOF	ENST00000272371	human	ensembl	74_37	-1	known	frame_shift_del	c.5026	p.R1676fs	0.997	NULL	pfam_C2_dom,pfam_Ferlin_B-domain,pfam_FerIin-domain,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	OTOF	HGNC	ENSG00000115155				91	0	0	99	23	18.8525
OTOF	0	genome.wustl.edu	37	2	26693553	26693554	+	In_Frame_Ins	INS	-	-	CTT			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	26693553	26693554	-	CTT	INS	OTOF	ENST00000272371	human	ensembl	74_37	-1	known	in_frame_ins	c.3931_3930	p.1310in_frame_insK	1.000:0.998	NULL	pfam_C2_dom,pfam_Ferlin_B-domain,pfam_FerIin-domain,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	OTOF	HGNC	ENSG00000115155				62	0	0	61	7	10.2941
EMILIN1	0	genome.wustl.edu	37	2	27305786	27305786	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	27305786	27305786	G	-	DEL	EMILIN1	ENST00000380320	human	ensembl	74_37	+1	known	frame_shift_del	c.1347	p.L452fs	0.997	NULL	pfam_EMI_domain,pfam_C1q,pfam_Collagen,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,pfscan_EMI_domain	-	no_errors	EMILIN1	HGNC	ENSG00000138080				29	0	0	20	8	28.5714
ZNF513	0	genome.wustl.edu	37	2	27603013	27603018	+	In_Frame_Del	DEL	TCCTCT	TCCTCT	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	TCCTCT	TCCTCT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	27603013	27603018	TCCTCT	-	DEL	ZNF513	ENST00000323703	human	ensembl	74_37	-1	known	in_frame_del	c.158_153	p.EE53in_frame_del	0.999:1.000:1.000:1.000:1.000:1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF513	HGNC	ENSG00000163795				181	0	0	148	10	6.32911
NRBP1	0	genome.wustl.edu	37	2	27658018	27658018	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	27658018	27658018	C	-	DEL	NRBP1	ENST00000233557	human	ensembl	74_37	+1	known	frame_shift_del	c.585	p.I198fs	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	NRBP1	HGNC	ENSG00000115216				59	0	0	54	7	11.4754
IFT172	0	genome.wustl.edu	37	2	27703943	27703943	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	27703943	27703943	C	-	DEL	IFT172	ENST00000260570	human	ensembl	74_37	-1	known	frame_shift_del	c.755	p.G252fs	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat	-	no_errors	IFT172	HGNC	ENSG00000138002				69	0	0	53	14	20.8955
TTC27	0	genome.wustl.edu	37	2	32859010	32859010	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	32859010	32859010	C	-	DEL	TTC27	ENST00000317907	human	ensembl	74_37	+1	known	frame_shift_del	c.334	p.P113fs	0.988	NULL	pfam_TPR_2,pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC27	HGNC	ENSG00000018699				157	0	0	110	8	6.77966
FAM98A	0	genome.wustl.edu	37	2	33813402	33813402	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	33813402	33813402	T	-	DEL	FAM98A	ENST00000238823	human	ensembl	74_37	-1	known	frame_shift_del	c.522	p.K174fs	1.000	pfam_Uncharacterised_FAM98	pfam_Uncharacterised_FAM98	-	no_errors	FAM98A	HGNC	ENSG00000119812				170	0	0	120	24	16.6667
FAM98A	0	genome.wustl.edu	37	2	33813525	33813525	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	33813525	33813525	T	-	DEL	FAM98A	ENST00000238823	human	ensembl	74_37	-1	known	frame_shift_del	c.399	p.A134fs	1.000	pfam_Uncharacterised_FAM98	pfam_Uncharacterised_FAM98	-	no_errors	FAM98A	HGNC	ENSG00000119812				137	0	0	107	6	5.30973
THADA	0	genome.wustl.edu	37	2	43800083	43800084	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	43800083	43800084	-	C	INS	THADA	ENST00000405006	human	ensembl	74_37	-1	known	frame_shift_ins	c.1778_1777	p.A593fs	0.990:0.849	superfamily_ARM-type_fold	pfam_DUF2428_death-receptor-like,superfamily_ARM-type_fold	-	no_errors	THADA	HGNC	ENSG00000115970				87	0	0	61	16	20.7792
FOXN2	0	genome.wustl.edu	37	2	48573667	48573667	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	48573667	48573667	A	-	DEL	FOXN2	ENST00000340553	human	ensembl	74_37	+1	known	frame_shift_del	c.314	p.K107fs	1.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXN2	HGNC	ENSG00000170802				159	0	0	115	17	12.8788
EHBP1	0	genome.wustl.edu	37	2	63092022	63092023	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	63092022	63092023	-	A	INS	EHBP1	ENST00000263991	human	ensembl	74_37	+1	known	frame_shift_ins	c.1019_1020	p.R342fs	1.000:1.000	NULL	pfam_DUF3585,pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	EHBP1	HGNC	ENSG00000115504				173	0	0	104	12	10.3448
EHBP1	0	genome.wustl.edu	37	2	63206352	63206353	+	Frame_Shift_Del	DEL	GA	GA	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	GA	GA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	63206352	63206353	GA	-	DEL	EHBP1	ENST00000263991	human	ensembl	74_37	+1	known	frame_shift_del	c.2595_2596	p.R868fs	1.000:1.000	NULL	pfam_DUF3585,pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	EHBP1	HGNC	ENSG00000115504				96	0	0	71	7	8.97436
RAB11FIP5	0	genome.wustl.edu	37	2	73302665	73302665	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	73302665	73302665	G	-	DEL	RAB11FIP5	ENST00000258098	human	ensembl	74_37	-1	known	frame_shift_del	c.1946	p.P649fs	0.080	NULL	pfam_Rab-bd_FIP-RBD,pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	RAB11FIP5	HGNC	ENSG00000135631				85	0	0	70	6	7.89474
CCT7	0	genome.wustl.edu	37	2	73479767	73479767	+	Splice_Site	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	73479767	73479767	G	-	DEL	CCT7	ENST00000258091	human	ensembl	74_37	+1	known	splice_site_del	c.1411-1	e12-1	1.000	-	-	-	no_errors	CCT7	HGNC	ENSG00000135624				97	0	0	81	11	11.9565
DUSP11	0	genome.wustl.edu	37	2	74007024	74007026	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	74007024	74007026	CTT	-	DEL	DUSP11	ENST00000272444	human	ensembl	74_37	-1	known	in_frame_del	c.219_217	p.K73in_frame_del	1.000:0.999:0.993	NULL	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-sp_Pase	-	no_errors	DUSP11	HGNC	ENSG00000144048				113	0	0	93	11	10.5769
LOXL3	0	genome.wustl.edu	37	2	74763924	74763924	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	74763924	74763924	C	-	DEL	LOXL3	ENST00000264094	human	ensembl	74_37	-1	known	frame_shift_del	c.824	p.G275fs	0.001	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR	pfam_Lysyl_oxidase,pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR,prints_Lysyl_oxidase,prints_SRCR	-	no_errors	LOXL3	HGNC	ENSG00000115318				100	0	0	78	19	19.5876
DOK1	0	genome.wustl.edu	37	2	74781909	74781910	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	74781909	74781910	-	T	INS	DOK1	ENST00000233668	human	ensembl	74_37	+1	known	frame_shift_ins	c.28_29	p.L12fs	1.000:0.996	smart_Pleckstrin_homology	pfam_Insln_rcpt_S1,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,pfscan_Insln_rcpt_S1	-	no_errors	DOK1	HGNC	ENSG00000115325				45	0	0	37	5	11.9048
TCF7L1	0	genome.wustl.edu	37	2	85532498	85532498	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	85532498	85532498	C	-	DEL	TCF7L1	ENST00000282111	human	ensembl	74_37	+1	known	frame_shift_del	c.961	p.S323fs	0.298	NULL	pfam_CTNNB1-bd_N,pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	TCF7L1	HGNC	ENSG00000152284				48	0	0	39	6	13.3333
RNF103	0	genome.wustl.edu	37	2	86832076	86832077	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	86832076	86832077	-	A	INS	RNF103	ENST00000237455	human	ensembl	74_37	-1	known	frame_shift_ins	c.948_947	p.L316fs	1.000:1.000	superfamily_Thioredoxin-like_fold	pfam_Znf_C3HC4_RING-type,superfamily_Thioredoxin-like_fold,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF103	HGNC	ENSG00000239305				142	0	0	116	8	6.45161
KIDINS220	0	genome.wustl.edu	37	2	8871611	8871612	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	8871611	8871612	-	T	INS	KIDINS220	ENST00000256707	human	ensembl	74_37	-1	known	frame_shift_ins	c.4555_4554	p.L1518fs	1.000:0.969	NULL	pfam_KAP_NTPase,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,superfamily_P-loop_NTPase,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	KIDINS220	HGNC	ENSG00000134313				120	0	0	99	8	7.47664
MRPS5	0	genome.wustl.edu	37	2	95780889	95780890	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	95780889	95780890	-	T	INS	MRPS5	ENST00000272418	human	ensembl	74_37	-1	known	frame_shift_ins	c.199_198	p.L66fs	0.004:0.000	NULL	pfam_Ribosomal_S5_C,pfam_Ribosomal_S5_N,superfamily_Ribosomal_S5_D2-typ_fold,pfscan_Ribosomal_S5_N	-	no_errors	MRPS5	HGNC	ENSG00000144029				138	0	0	86	21	19.6262
ZNF514	0	genome.wustl.edu	37	2	95815035	95815035	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	95815035	95815035	T	-	DEL	ZNF514	ENST00000295208	human	ensembl	74_37	-1	known	frame_shift_del	c.1195	p.T399fs	0.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF514	HGNC	ENSG00000144026				117	0	0	97	31	24.2188
LIPT1	0	genome.wustl.edu	37	2	99778504	99778504	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	2	99778504	99778504	A	-	DEL	LIPT1	ENST00000340066	human	ensembl	74_37	+1	known	frame_shift_del	c.84	p.N30fs	0.031	NULL	pfam_BPL_LipA_LipB,tigrfam_LipoylTrfase_LipoateP_Ligase	-	no_errors	LIPT1	HGNC	ENSG00000144182				128	0	0	95	8	7.76699
FLRT3	0	genome.wustl.edu	37	20	14306924	14306925	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	14306924	14306925	-	T	INS	FLRT3	ENST00000341420	human	ensembl	74_37	-1	known	frame_shift_ins	c.1229_1228	p.T410fs	1.000:1.000	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Leu-rich_rpt,superfamily_Fibronectin_type3,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_Fibronectin_type3	-	no_errors	FLRT3	HGNC	ENSG00000125848				261	0	0	223	15	6.30252
CD93	0	genome.wustl.edu	37	20	23065992	23065992	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	23065992	23065992	C	-	DEL	CD93	ENST00000246006	human	ensembl	74_37	-1	known	frame_shift_del	c.838	p.D280fs	0.033	pirsf_CD93/CD141,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom	pirsf_CD93/CD141,pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_C-type_lectin,superfamily_C-type_lectin_fold,superfamily_MFS_dom_general_subst_transpt,smart_C-type_lectin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_C-type_lectin	-	no_errors	CD93	HGNC	ENSG00000125810				136	0	0	126	22	14.8649
GGTLC1	0	genome.wustl.edu	37	20	23966737	23966738	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	23966737	23966738	-	G	INS	GGTLC1	ENST00000278765	human	ensembl	74_37	-1	known	frame_shift_ins	c.280_279	p.S93fs	1.000:0.997	pfam_GGT_peptidase	pfam_GGT_peptidase,prints_GGT_peptidase	-	no_errors	GGTLC1	HGNC	ENSG00000149435				139	0	0	126	12	8.69565
PDRG1	0	genome.wustl.edu	37	20	30534348	30534348	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	30534348	30534348	T	-	DEL	PDRG1	ENST00000202017	human	ensembl	74_37	-1	known	frame_shift_del	c.270	p.K90fs	0.791	pfam_PFD_beta-like,superfamily_Prefoldin	pfam_PFD_beta-like,superfamily_Prefoldin	-	no_errors	PDRG1	HGNC	ENSG00000088356				171	0	0	174	18	9.375
BPIFB4	0	genome.wustl.edu	37	20	31671238	31671238	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	31671238	31671238	A	-	DEL	BPIFB4	ENST00000375483	human	ensembl	74_37	+1	known	frame_shift_del	c.235	p.K80fs	0.993	NULL	pfam_Lipid-bd_serum_glycop_N,pfam_Lipid-bd_serum_glycop_C,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_N,smart_Lipid-bd_serum_glycop_C	-	no_errors	BPIFB4	HGNC	ENSG00000186191				110	1	0.900901	102	11	9.73451
CPNE1	0	genome.wustl.edu	37	20	34220730	34220730	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	34220730	34220730	C	-	DEL	CPNE1	ENST00000317677	human	ensembl	74_37	-1	known	frame_shift_del	c.131	p.G44fs	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom	pfam_Copine,pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,smart_VWF_A,pfscan_C2_dom	-	no_errors	CPNE1	HGNC	ENSG00000214078				86	0	0	84	15	15.1515
RBM12	0	genome.wustl.edu	37	20	34241335	34241335	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	34241335	34241335	T	-	DEL	RBM12	ENST00000359646	human	ensembl	74_37	-1	known	frame_shift_del	c.1910	p.K637fs	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM12	HGNC	ENSG00000244462				99	0	0	113	9	7.37705
CTNNBL1	0	genome.wustl.edu	37	20	36361416	36361416	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	36361416	36361416	A	-	DEL	CTNNBL1	ENST00000405275	human	ensembl	74_37	+1	known	frame_shift_del	c.85	p.R31fs	1.000	pfam_CTNNBL1_N	pfam_CTNNBL1_N,superfamily_ARM-type_fold	-	no_errors	CTNNBL1	HGNC	ENSG00000132792				42	0	0	21	14	40
L3MBTL1	0	genome.wustl.edu	37	20	42159498	42159498	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	42159498	42159498	C	-	DEL	L3MBTL1	ENST00000418998	human	ensembl	74_37	+1	known	frame_shift_del	c.1187	p.K398fs	1.000	smart_Mbt,pfscan_Mbt	pfam_Mbt,pfam_Znf_C2HC,superfamily_SAM/pointed,smart_Mbt,pfscan_Mbt	-	no_errors	L3MBTL1	HGNC	ENSG00000185513				35	0	0	26	6	18.75
SLC12A5	0	genome.wustl.edu	37	20	44664156	44664156	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	44664156	44664156	A	-	DEL	SLC12A5	ENST00000454036	human	ensembl	74_37	+1	known	frame_shift_del	c.330	p.K112fs	0.989	tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease/SLC12A_dom,prints_KCL_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A5	HGNC	ENSG00000124140				42	0	0	52	8	13.3333
ZNF334	0	genome.wustl.edu	37	20	45130769	45130769	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	45130769	45130769	T	-	DEL	ZNF334	ENST00000347606	human	ensembl	74_37	-1	known	frame_shift_del	c.1209	p.K403fs	0.999	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF334	HGNC	ENSG00000198185				147	1	0.675676	107	22	17.0543
ZMYND8	0	genome.wustl.edu	37	20	45875072	45875072	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	45875072	45875072	T	-	DEL	ZMYND8	ENST00000536340	human	ensembl	74_37	-1	known	frame_shift_del	c.1985	p.K662fs	1.000	NULL	pfam_DUF3544,pfam_Bromodomain,pfam_PWWP_dom,pfam_Znf_PHD-finger,pfam_Znf_MYND,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Bromodomain,smart_PWWP_dom,pfscan_PWWP_dom,pfscan_Znf_MYND,pfscan_Znf_PHD-finger,pfscan_Bromodomain	-	no_errors	ZMYND8	HGNC	ENSG00000101040				285	0	0	203	41	16.8033
NCOA3	0	genome.wustl.edu	37	20	46264348	46264348	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	46264348	46264348	C	-	DEL	NCOA3	ENST00000371998	human	ensembl	74_37	+1	known	frame_shift_del	c.1395	p.P467fs	1.000	pirsf_Nuclear_rcpt_coactivator	pfam_Nuc_rcpt_coact_Ncoa-typ,pfam_SRC-1,pfam_PAS_fold,superfamily_PAS,superfamily_Nuc_rcpt_coact,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,pirsf_Nuclear_rcpt_coactivator,pfscan_PAS,pfscan_bHLH_dom	-	no_errors	NCOA3	HGNC	ENSG00000124151				98	0	0	72	6	7.69231
PREX1	0	genome.wustl.edu	37	20	47266692	47266693	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	47266692	47266693	-	G	INS	PREX1	ENST00000371941	human	ensembl	74_37	-1	known	frame_shift_ins	c.2870_2869	p.L957fs	0.713:0.684	NULL	pfam_DH-domain,pfam_DEP_dom,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX1	HGNC	ENSG00000124126				162	0	0	128	12	8.57143
ARFGEF2	0	genome.wustl.edu	37	20	47601286	47601286	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	47601286	47601286	G	-	DEL	ARFGEF2	ENST00000371917	human	ensembl	74_37	+1	known	frame_shift_del	c.1979	p.I662fs	1.000	pfam_Sec7_dom,superfamily_Sec7_dom,superfamily_ARM-type_fold,smart_Sec7_dom,pfscan_Sec7_dom	pfam_Sec7_dom,pfam_DUF1981_Sec7_assoc,superfamily_Sec7_dom,superfamily_ARM-type_fold,smart_Sec7_dom,pfscan_Sec7_dom	-	no_errors	ARFGEF2	HGNC	ENSG00000124198				206	0	0	133	24	15.2866
DDX27	0	genome.wustl.edu	37	20	47858504	47858504	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	47858504	47858504	A	-	DEL	DDX27	ENST00000371764	human	ensembl	74_37	+1	known	frame_shift_del	c.2065	p.K691fs	1.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX27	HGNC	ENSG00000124228				125	1	0.793651	71	22	23.6559
ADNP	0	genome.wustl.edu	37	20	49509355	49509355	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	49509355	49509355	T	-	DEL	ADNP	ENST00000349014	human	ensembl	74_37	-1	known	frame_shift_del	c.1896	p.G633fs	1.000	smart_Znf_C2H2-like	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ADNP	HGNC	ENSG00000101126				273	0	0	144	44	23.4043
TSHZ2	0	genome.wustl.edu	37	20	51871037	51871039	+	In_Frame_Del	DEL	AGA	AGA	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	51871037	51871039	AGA	-	DEL	TSHZ2	ENST00000371497	human	ensembl	74_37	+1	known	in_frame_del	c.1040_1042	p.K348in_frame_del	0.997:1.000:1.000	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	TSHZ2	HGNC	ENSG00000182463				143	0	0	123	12	8.88889
SYCP2	0	genome.wustl.edu	37	20	58443507	58443508	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	58443507	58443508	-	T	INS	SYCP2	ENST00000357552	human	ensembl	74_37	-1	known	frame_shift_ins	c.3949_3948	p.L1316fs	0.000:0.001	NULL	NULL	-	no_errors	SYCP2	HGNC	ENSG00000196074				268	0	0	176	25	12.4378
BMP2	0	genome.wustl.edu	37	20	6759494	6759494	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	20	6759494	6759494	C	-	DEL	BMP2	ENST00000378827	human	ensembl	74_37	+1	known	frame_shift_del	c.949	p.P318fs	1.000	pfam_TGF-b_C,smart_TGF-b_C,prints_Inhibin_asu	pfam_TGF-b_N,pfam_TGF-b_C,smart_TGF-b_C,prints_Inhibin_asu	-	no_errors	BMP2	HGNC	ENSG00000125845				102	0	0	103	13	11.2069
TPTE	0	genome.wustl.edu	37	21	10944703	10944704	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	21	10944703	10944704	-	C	INS	TPTE	ENST00000361285	human	ensembl	74_37	-1	known	frame_shift_ins	c.531_530	p.I177fs	0.015:0.009	pfam_Ion_trans_dom	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Ion_trans_dom,superfamily_C2_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TPTE	HGNC	ENSG00000166157				494	0	0	339	30	8.13008
USP25	0	genome.wustl.edu	37	21	17177457	17177457	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	21	17177457	17177457	T	-	DEL	USP25	ENST00000400183	human	ensembl	74_37	+1	known	frame_shift_del	c.660	p.F221fs	0.995	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfam_Ubiquitin-int_motif,superfamily_UBA-like,smart_Ubiquitin-int_motif,pfscan_Ubiquitin-int_motif,pfscan_Peptidase_C19/C67	-	no_errors	USP25	HGNC	ENSG00000155313				88	0	0	44	18	29.0323
DOPEY2	0	genome.wustl.edu	37	21	37597906	37597906	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	21	37597906	37597906	C	-	DEL	DOPEY2	ENST00000399151	human	ensembl	74_37	+1	known	frame_shift_del	c.1414	p.T474fs	0.010	NULL	pfam_Dopey_N	-	no_errors	DOPEY2	HGNC	ENSG00000142197				72	0	0	51	8	13.5593
DSCAM	0	genome.wustl.edu	37	21	41725417	41725418	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	21	41725417	41725418	-	T	INS	DSCAM	ENST00000400454	human	ensembl	74_37	-1	known	frame_shift_ins	c.909_908	p.V304fs	1.000:1.000	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub2,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	DSCAM	HGNC	ENSG00000171587				222	0	0	197	13	6.19048
COL18A1	0	genome.wustl.edu	37	21	46900000	46900001	+	Frame_Shift_Del	DEL	GA	GA	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	GA	GA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	21	46900000	46900001	GA	-	DEL	COL18A1	ENST00000359759	human	ensembl	74_37	+1	known	frame_shift_del	c.2573_2574	p.G861fs	0.031:0.001	NULL	pfam_Collagenase_NC10/endostatin,pfam_DUF959_COL18_N,pfam_Collagen,pfam_Frizzled_dom,superfamily_C-type_lectin_fold,superfamily_ConA-like_lec_gl_sf,superfamily_Frizzled_dom,smart_Frizzled_dom,smart_Laminin_G,pfscan_Frizzled_dom	-	no_errors	COL18A1	HGNC	ENSG00000182871				41	0	0	45	7	13.4615
MCM3AP	0	genome.wustl.edu	37	21	47663396	47663397	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	21	47663396	47663397	-	G	INS	MCM3AP	ENST00000291688	human	ensembl	74_37	-1	known	frame_shift_ins	c.5279_5278	p.R1760fs	0.278:0.019	NULL	pfam_SAC3/GANP/Nin1/mts3/eIF-3-p25	-	no_errors	MCM3AP	HGNC	ENSG00000160294				161	0	0	176	10	5.37634
ZDHHC8P1	0	genome.wustl.edu	37	22	23744282	23744282	+	RNA	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	23744282	23744282	G	-	DEL	ZDHHC8P1	ENST00000255890	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.934	-	-	-	no_errors	ZDHHC8P1	HGNC	ENSG00000133519				9	0	0	6	4	40
SNRPD3	0	genome.wustl.edu	37	22	24953712	24953712	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	24953712	24953712	A	-	DEL	SNRPD3	ENST00000215829	human	ensembl	74_37	+1	known	frame_shift_del	c.70	p.T24fs	1.000	pfam_Ribonucl_LSM,superfamily_LSM_dom,smart_Ribonucl_LSM_euk/arc	pfam_Ribonucl_LSM,superfamily_LSM_dom,smart_Ribonucl_LSM_euk/arc	-	no_errors	SNRPD3	HGNC	ENSG00000100028				133	0	0	110	14	11.2903
SGSM1	0	genome.wustl.edu	37	22	25264783	25264783	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	25264783	25264783	G	-	DEL	SGSM1	ENST00000400359	human	ensembl	74_37	+1	known	frame_shift_del	c.1252	p.V418fs	1.000	NULL	pfam_Run,pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Run,smart_Rab-GTPase-TBC_dom,pfscan_Run,pfscan_Rab-GTPase-TBC_dom	-	no_errors	SGSM1	HGNC	ENSG00000167037				111	0	0	101	8	7.33945
ZMAT5	0	genome.wustl.edu	37	22	30127247	30127247	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	30127247	30127247	C	-	DEL	ZMAT5	ENST00000344318	human	ensembl	74_37	-1	known	frame_shift_del	c.480	p.W161fs	0.907	NULL	pfam_Znf_CCCH,pfam_Znf_U1-C,smart_Znf_CCCH	-	no_errors	ZMAT5	HGNC	ENSG00000100319				72	0	0	68	9	11.6883
PRR14L	0	genome.wustl.edu	37	22	32099549	32099549	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	32099549	32099549	G	-	DEL	PRR14L	ENST00000397493	human	ensembl	74_37	-1	known	frame_shift_del	c.5987	p.P1996fs	0.508	NULL	NULL	-	no_errors	PRR14L	HGNC	ENSG00000183530				185	0	0	149	8	5.09554
CSF2RB	0	genome.wustl.edu	37	22	37334205	37334205	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	37334205	37334205	C	-	DEL	CSF2RB	ENST00000262825	human	ensembl	74_37	+1	known	frame_shift_del	c.2373	p.P793fs	0.000	pirsf_IL3_rcpt_beta	pirsf_IL3_rcpt_beta,pfam_Fibronectin_type3,pfam_IL-6_rcpt_alpha-bd,pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	CSF2RB	HGNC	ENSG00000100368				47	0	0	53	9	14.5161
TNRC6B	0	genome.wustl.edu	37	22	40662479	40662480	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	40662479	40662480	-	G	INS	TNRC6B	ENST00000454349	human	ensembl	74_37	+1	known	frame_shift_ins	c.2245_2246	p.E751fs	1.000:1.000	NULL	pfam_Argonaute_hook_dom,superfamily_UBA-like	-	no_errors	TNRC6B	HGNC	ENSG00000100354				41	0	0	35	4	10.2564
CELSR1	0	genome.wustl.edu	37	22	46760471	46760471	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	46760471	46760471	G	-	DEL	CELSR1	ENST00000262738	human	ensembl	74_37	-1	known	frame_shift_del	c.8717	p.P2906fs	0.005	NULL	pfam_Cadherin,pfam_DUF3497,pfam_Laminin_G,pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EG-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR1	HGNC	ENSG00000075275				73	0	0	66	5	7.04225
CELSR1	0	genome.wustl.edu	37	22	46931227	46931227	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	46931227	46931227	C	-	DEL	CELSR1	ENST00000262738	human	ensembl	74_37	-1	known	frame_shift_del	c.1841	p.G614fs	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_DUF3497,pfam_Laminin_G,pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EG-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR1	HGNC	ENSG00000075275				46	0	0	36	7	16.2791
CERK	0	genome.wustl.edu	37	22	47086002	47086002	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	47086002	47086002	C	-	DEL	CERK	ENST00000216264	human	ensembl	74_37	-1	known	frame_shift_del	c.1428	p.K477fs	0.009	NULL	pfam_Diacylglycerol_kinase_cat_dom,superfamily_ATP-NAD_kinase_PpnK-typ,smart_Diacylglycerol_kinase_cat_dom	-	no_errors	CERK	HGNC	ENSG00000100422				106	0	0	66	26	28.2609
ZBED4	0	genome.wustl.edu	37	22	50277749	50277749	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	50277749	50277749	A	-	DEL	ZBED4	ENST00000216268	human	ensembl	74_37	+1	known	frame_shift_del	c.439	p.N148fs	0.997	pfam_Znf_BED_prd,smart_Znf_BED_prd,pfscan_Znf_BED_prd	pfam_Znf_BED_prd,pfam_HATC_dom_C,superfamily_RNaseH-like_dom,smart_Znf_BED_prd,pfscan_Znf_BED_prd	-	no_errors	ZBED4	HGNC	ENSG00000100426				90	0	0	62	17	21.519
PANX2	0	genome.wustl.edu	37	22	50617616	50617616	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	50617616	50617616	G	-	DEL	PANX2	ENST00000395842	human	ensembl	74_37	+1	known	frame_shift_del	c.1944	p.D650fs	0.780	NULL	pfam_Innexin,pfscan_Innexin	-	no_errors	PANX2	HGNC	ENSG00000073150				33	0	0	35	6	14.6341
ARSA	0	genome.wustl.edu	37	22	51063611	51063611	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	22	51063611	51063611	G	-	DEL	ARSA	ENST00000216124	human	ensembl	74_37	-1	known	frame_shift_del	c.1492	p.R498fs	0.004	superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	-	no_errors	ARSA	HGNC	ENSG00000100299				15	0	0	12	6	33.3333
KIAA1524	0	genome.wustl.edu	37	3	108279620	108279621	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	108279620	108279621	-	T	INS	KIAA1524	ENST00000295746	human	ensembl	74_37	-1	known	frame_shift_ins	c.1703_1702	p.M568fs	0.603:0.645	NULL	superfamily_ARM-type_fold	-	no_errors	KIAA1524	HGNC	ENSG00000163507				180	0	0	163	12	6.85714
KIAA1524	0	genome.wustl.edu	37	3	108287038	108287039	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	108287038	108287039	-	T	INS	KIAA1524	ENST00000295746	human	ensembl	74_37	-1	known	frame_shift_ins	c.1237_1236	p.C412fs	1.000:0.997	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	KIAA1524	HGNC	ENSG00000163507				157	0	0	108	8	6.89655
DZIP3	0	genome.wustl.edu	37	3	108403180	108403181	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	108403180	108403181	-	C	INS	DZIP3	ENST00000361582	human	ensembl	74_37	+1	known	frame_shift_ins	c.3001_3002	p.L1003fs	0.440:0.492	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	DZIP3	HGNC	ENSG00000198919				321	0	0	314	18	5.42169
DPPA2	0	genome.wustl.edu	37	3	109031523	109031524	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	109031523	109031524	-	C	INS	DPPA2	ENST00000478945	human	ensembl	74_37	-1	known	frame_shift_ins	c.50_49	p.E17fs	0.000:0.000	NULL	pfscan_SAP_dom	-	no_errors	DPPA2	HGNC	ENSG00000163530				125	0	0	90	11	10.8911
SLC9C1	0	genome.wustl.edu	37	3	111888106	111888106	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	111888106	111888106	T	-	DEL	SLC9C1	ENST00000305815	human	ensembl	74_37	-1	known	frame_shift_del	c.2989	p.M997fs	1.000	superfamily_cNMP-bd-like	pfam_Cation/H_exchanger,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,pfscan_cNMP-bd_dom	-	no_errors	SLC9C1	HGNC	ENSG00000172139				109	0	0	82	8	8.88889
ZBTB20	0	genome.wustl.edu	37	3	114058003	114058003	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	114058003	114058003	G	-	DEL	ZBTB20	ENST00000474710	human	ensembl	74_37	-1	known	frame_shift_del	c.2075	p.P692fs	0.678	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB20	HGNC	ENSG00000181722				56	0	0	68	7	9.33333
ZBTB20	0	genome.wustl.edu	37	3	114069198	114069198	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	114069198	114069198	T	-	DEL	ZBTB20	ENST00000474710	human	ensembl	74_37	-1	known	frame_shift_del	c.1727	p.K576fs	1.000	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB20	HGNC	ENSG00000181722				184	0	0	171	10	5.52486
GAP43	0	genome.wustl.edu	37	3	115394864	115394864	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	115394864	115394864	A	-	DEL	GAP43	ENST00000305124	human	ensembl	74_37	+1	known	frame_shift_del	c.35	p.N14fs	1.000	pfam_Neuromodulin_gap-junction_N,prints_Neuromodulin	pfam_Neuromodulin_C,pfam_Neuromodulin_gap-junction_N,pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Neuromodulin	-	no_errors	GAP43	HGNC	ENSG00000172020				98	0	0	79	7	8.13953
IGSF11	0	genome.wustl.edu	37	3	118647390	118647391	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	118647390	118647391	-	C	INS	IGSF11	ENST00000393775	human	ensembl	74_37	-1	known	frame_shift_ins	c.390_389	p.R131fs	1.000:1.000	smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	IGSF11	HGNC	ENSG00000144847				85	0	0	92	6	6.12245
MAATS1	0	genome.wustl.edu	37	3	119449190	119449190	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	119449190	119449190	A	-	DEL	MAATS1	ENST00000273390	human	ensembl	74_37	+1	known	frame_shift_del	c.984	p.M330fs	0.712	NULL	superfamily_S-AdoMet_deCO2ase_core	-	no_errors	MAATS1	HGNC	ENSG00000183833				224	0	0	173	15	7.97872
POLQ	0	genome.wustl.edu	37	3	121192306	121192306	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	121192306	121192306	G	-	DEL	POLQ	ENST00000264233	human	ensembl	74_37	-1	known	frame_shift_del	c.6434	p.P2145fs	1.000	NULL	pfam_DNA-dir_DNA_pol_A_palm_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_RNaseH-like_dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_DNA-dir_DNA_pol_A_palm_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_DNA_polymerase_A	-	no_errors	POLQ	HGNC	ENSG00000051341				381	0	0	240	47	16.3763
EAF2	0	genome.wustl.edu	37	3	121573569	121573569	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	121573569	121573569	A	-	DEL	EAF2	ENST00000273668	human	ensembl	74_37	+1	known	frame_shift_del	c.237	p.K81fs	1.000	pfam_Tscrpt_elong_fac_Eaf_N	pfam_Tscrpt_elong_fac_Eaf_N	-	no_errors	EAF2	HGNC	ENSG00000145088				108	0	0	62	16	20.5128
CCDC14	0	genome.wustl.edu	37	3	123665705	123665705	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	123665705	123665705	T	-	DEL	CCDC14	ENST00000488653	human	ensembl	74_37	-1	known	frame_shift_del	c.1290	p.V431fs	0.940	NULL	NULL	-	no_errors	CCDC14	HGNC	ENSG00000175455				263	0	0	206	17	7.62332
KBTBD12	0	genome.wustl.edu	37	3	127703079	127703079	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	127703079	127703079	C	-	DEL	KBTBD12	ENST00000405109	human	ensembl	74_37	+1	known	frame_shift_del	c.1830	p.P612fs	0.999	NULL	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KBTBD12	HGNC	ENSG00000187715				91	0	0	65	18	21.6867
GATA2	0	genome.wustl.edu	37	3	128204623	128204623	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	128204623	128204623	C	-	DEL	GATA2	ENST00000341105	human	ensembl	74_37	-1	known	frame_shift_del	c.818	p.G273fs	1.000	pirsf_TF_GATA-1/2/3	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA2	HGNC	ENSG00000179348				31	0	0	39	9	18.75
TMCC1	0	genome.wustl.edu	37	3	129389372	129389373	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	129389372	129389373	-	T	INS	TMCC1	ENST00000393238	human	ensembl	74_37	-1	known	frame_shift_ins	c.1312_1311	p.G437fs	1.000:0.788	pfam_Predicted_TM_coiled-coil_2	pfam_Predicted_TM_coiled-coil_2	-	no_errors	TMCC1	HGNC	ENSG00000172765				123	0	0	125	13	9.42029
COL6A6	0	genome.wustl.edu	37	3	130281935	130281935	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	130281935	130281935	T	-	DEL	COL6A6	ENST00000358511	human	ensembl	74_37	+1	known	frame_shift_del	c.88	p.L31fs	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A6	HGNC	ENSG00000206384				221	0	0	179	38	17.5115
NPHP3	0	genome.wustl.edu	37	3	132424606	132424607	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	132424606	132424607	-	A	INS	NPHP3	ENST00000337331	human	ensembl	74_37	-1	known	frame_shift_ins	c.1328_1327	p.C443fs	0.970:0.954	superfamily_P-loop_NTPase	pfam_TPR_1,pfam_TPR-3,superfamily_P-loop_NTPase,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	NPHP3	HGNC	ENSG00000113971				145	0	0	103	6	5.50459
HDAC11	0	genome.wustl.edu	37	3	13538268	13538268	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	13538268	13538268	C	-	DEL	HDAC11	ENST00000295757	human	ensembl	74_37	+1	known	frame_shift_del	c.285	p.V98fs	1.000	pfam_His_deacetylse_dom	pfam_His_deacetylse_dom,prints_His_deacetylse	-	no_errors	HDAC11	HGNC	ENSG00000163517				73	0	0	60	16	21.0526
CNTN6	0	genome.wustl.edu	37	3	1371501	1371501	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	1371501	1371501	A	-	DEL	CNTN6	ENST00000350110	human	ensembl	74_37	+1	known	frame_shift_del	c.1246	p.K418fs	0.992	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CNTN6	HGNC	ENSG00000134115				125	0	0	89	17	16.0377
DZIP1L	0	genome.wustl.edu	37	3	137783521	137783521	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	137783521	137783521	A	-	DEL	DZIP1L	ENST00000327532	human	ensembl	74_37	-1	known	frame_shift_del	c.2091	p.F697fs	0.000	NULL	pfscan_Znf_C2H2	-	no_errors	DZIP1L	HGNC	ENSG00000158163				293	0	0	223	41	15.5303
ZBTB38	0	genome.wustl.edu	37	3	141161678	141161679	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	141161678	141161679	-	A	INS	ZBTB38	ENST00000321464	human	ensembl	74_37	+1	known	frame_shift_ins	c.451_452	p.R153fs	0.299:0.247	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB38	HGNC	ENSG00000177311				74	0	0	58	6	9.375
XRN1	0	genome.wustl.edu	37	3	142054303	142054304	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	142054303	142054304	-	T	INS	XRN1	ENST00000264951	human	ensembl	74_37	-1	known	frame_shift_ins	c.3926_3925	p.M1309fs	0.128:0.129	pirsf_5_3_exoribonuclease_1	pfam_Put_53exo,pirsf_5_3_exoribonuclease_1	-	no_errors	XRN1	HGNC	ENSG00000114127				191	0	0	141	17	10.7595
PLOD2	0	genome.wustl.edu	37	3	145788925	145788925	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	145788925	145788925	T	-	DEL	PLOD2	ENST00000282903	human	ensembl	74_37	-1	known	frame_shift_del	c.2025	p.K675fs	0.916	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	PLOD2	HGNC	ENSG00000152952				48	0	0	40	7	14.8936
PLOD2	0	genome.wustl.edu	37	3	145795653	145795653	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	145795653	145795653	G	-	DEL	PLOD2	ENST00000282903	human	ensembl	74_37	-1	known	frame_shift_del	c.1559	p.P520fs	1.000	NULL	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	PLOD2	HGNC	ENSG00000152952				244	0	0	180	14	7.21649
C3orf20	0	genome.wustl.edu	37	3	14802989	14802989	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	14802989	14802989	G	-	DEL	C3orf20	ENST00000253697	human	ensembl	74_37	+1	known	frame_shift_del	c.2362	p.K790fs	0.991	NULL	NULL	-	no_errors	C3orf20	HGNC	ENSG00000131379				84	0	0	74	21	22.1053
GYG1	0	genome.wustl.edu	37	3	148727065	148727065	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	148727065	148727065	G	-	DEL	GYG1	ENST00000345003	human	ensembl	74_37	+1	known	frame_shift_del	c.484	p.D163fs	1.000	pfam_Glyco_trans_8	pfam_Glyco_trans_8	-	no_errors	GYG1	HGNC	ENSG00000163754				149	0	0	144	10	6.49351
CP	0	genome.wustl.edu	37	3	148939579	148939579	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	148939579	148939579	T	-	DEL	CP	ENST00000264613	human	ensembl	74_37	-1	known	frame_shift_del	c.1	p.M1fs	0.993	NULL	pfam_Cu-oxidase_2,pfam_Cu-oxidase_3,pfam_Cu-oxidase,superfamily_Cupredoxin	-	no_errors	CP	HGNC	ENSG00000047457				67	0	0	53	6	10.1695
GPR171	0	genome.wustl.edu	37	3	150917110	150917110	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	150917110	150917110	A	-	DEL	GPR171	ENST00000309180	human	ensembl	74_37	-1	known	frame_shift_del	c.64	p.Y22fs	1.000	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR171	HGNC	ENSG00000174946				107	0	0	72	15	17.2414
GPR87	0	genome.wustl.edu	37	3	151012163	151012163	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	151012163	151012163	T	-	DEL	GPR87	ENST00000260843	human	ensembl	74_37	-1	known	frame_shift_del	c.871	p.I291fs	0.996	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_P2Y13_rcpt,prints_P2Y14_rcpt	-	no_errors	GPR87	HGNC	ENSG00000138271				126	1	0.787402	86	8	8.51064
ZFYVE20	0	genome.wustl.edu	37	3	15132024	15132024	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	15132024	15132024	T	-	DEL	ZFYVE20	ENST00000253699	human	ensembl	74_37	-1	known	frame_shift_del	c.171	p.A58fs	1.000	NULL	pfam_Rbsn,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel,pfscan_Znf_C2H2	-	no_errors	ZFYVE20	HGNC	ENSG00000131381				126	0	0	88	7	7.36842
AADAC	0	genome.wustl.edu	37	3	151545684	151545685	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	151545684	151545685	-	A	INS	AADAC	ENST00000232892	human	ensembl	74_37	+1	known	frame_shift_ins	c.924_925	p.Y310fs	0.000:0.000	pirsf_Arylacetamide_deacetylase	pfam_AB_hydrolase_3,pfam_CarbesteraseB,pirsf_Arylacetamide_deacetylase	-	no_errors	AADAC	HGNC	ENSG00000114771				83	0	0	79	6	7.05882
DHX36	0	genome.wustl.edu	37	3	154032860	154032860	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	154032860	154032860	T	-	DEL	DHX36	ENST00000496811	human	ensembl	74_37	-1	known	frame_shift_del	c.578	p.N193fs	0.790	superfamily_P-loop_NTPase	pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX36	HGNC	ENSG00000174953				77	0	0	61	8	11.5942
TIPARP	0	genome.wustl.edu	37	3	156396296	156396297	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	156396296	156396297	-	A	INS	TIPARP	ENST00000295924	human	ensembl	74_37	+1	known	frame_shift_ins	c.810_811	p.R271fs	1.000:1.000	NULL	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_WWE-dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	TIPARP	HGNC	ENSG00000163659				151	1	0.657895	134	10	6.94444
ANKRD28	0	genome.wustl.edu	37	3	15756165	15756166	+	Splice_Site	INS	-	-	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	15756165	15756166	-	G	INS	ANKRD28	ENST00000383777	human	ensembl	74_37	-1	known	splice_site_ins	c.1006-3_1006-2	e9-2	1.000:0.998	-	-	-	no_errors	ANKRD28	HGNC	ENSG00000206560				45	0	0	31	11	26.1905
SMC4	0	genome.wustl.edu	37	3	160120548	160120549	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	160120548	160120549	-	A	INS	SMC4	ENST00000344722	human	ensembl	74_37	+1	known	frame_shift_ins	c.403_404	p.I137fs	1.000:1.000	pfam_RecF/RecN/SMC_N,superfamily_P-loop_NTPase	pfam_RecF/RecN/SMC_N,pfam_SMC_hinge,superfamily_P-loop_NTPase,superfamily_SMC_hinge,superfamily_Chemotax_Me-accpt_rcpt_lig-bd,superfamily_Prefoldin,smart_SMC_hinge	-	no_errors	SMC4	HGNC	ENSG00000113810				232	0	0	130	15	10.3448
ZNF639	0	genome.wustl.edu	37	3	179046097	179046097	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	179046097	179046097	A	-	DEL	ZNF639	ENST00000326361	human	ensembl	74_37	+1	known	frame_shift_del	c.16	p.R8fs	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF639	HGNC	ENSG00000121864				67	0	0	38	6	13.6364
FXR1	0	genome.wustl.edu	37	3	180666228	180666228	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	180666228	180666228	A	-	DEL	FXR1	ENST00000357559	human	ensembl	74_37	+1	known	frame_shift_del	c.364	p.N124fs	1.000	NULL	pfam_Frag_X_MRP_fam,pfam_KH_dom_type_1,pfam_Agenet-like_dom,superfamily_NA-bd_OB-fold,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	FXR1	HGNC	ENSG00000114416				91	0	0	71	17	19.3182
SOX2	0	genome.wustl.edu	37	3	181430901	181430901	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	181430901	181430901	C	-	DEL	SOX2	ENST00000325404	human	ensembl	74_37	+1	known	frame_shift_del	c.753	p.P253fs	1.000	NULL	pfam_TF_SOX,pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	SOX2	HGNC	ENSG00000181449				67	0	0	65	13	16.6667
ATP11B	0	genome.wustl.edu	37	3	182607279	182607280	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	182607279	182607280	-	T	INS	ATP11B	ENST00000323116	human	ensembl	74_37	+1	known	frame_shift_ins	c.2925_2926	p.G977fs	1.000:1.000	tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP11B	HGNC	ENSG00000058063				131	0	0	70	7	9.09091
DVL3	0	genome.wustl.edu	37	3	183882163	183882163	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	183882163	183882163	C	-	DEL	DVL3	ENST00000313143	human	ensembl	74_37	+1	known	frame_shift_del	c.340	p.P115fs	1.000	NULL	pfam_Dishevelled_C-dom,pfam_DIX,pfam_Dishevelled_protein_dom,pfam_PDZ,pfam_DEP_dom,superfamily_PDZ,smart_DIX,smart_PDZ,smart_DEP_dom,pfscan_DEP_dom,pfscan_DIX,pfscan_PDZ,prints_Dishevelled_fam,prints_Dishevelled_3	-	no_errors	DVL3	HGNC	ENSG00000161202				83	0	0	100	8	7.40741
FAM131A	0	genome.wustl.edu	37	3	184062513	184062513	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	184062513	184062513	C	-	DEL	FAM131A	ENST00000383847	human	ensembl	74_37	+1	known	frame_shift_del	c.856	p.S288fs	1.000	NULL	NULL	-	no_errors	FAM131A	HGNC	ENSG00000175182				105	0	0	118	10	7.8125
TMEM41A	0	genome.wustl.edu	37	3	185212518	185212518	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	185212518	185212518	A	-	DEL	TMEM41A	ENST00000421852	human	ensembl	74_37	-1	known	frame_shift_del	c.467	p.F156fs	1.000	pfam_SNARE_assoc	pfam_SNARE_assoc	-	no_errors	TMEM41A	HGNC	ENSG00000163900				163	0	0	138	9	6.12245
ETV5	0	genome.wustl.edu	37	3	185797835	185797835	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	185797835	185797835	G	-	DEL	ETV5	ENST00000537818	human	ensembl	74_37	-1	known	frame_shift_del	c.547	p.L183fs	0.984	pfam_ETS_PEA3_N	pfam_ETS_PEA3_N,pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	ETV5	HGNC	ENSG00000244405				58	0	0	45	7	13.4615
DGKG	0	genome.wustl.edu	37	3	186006613	186006613	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	186006613	186006613	G	-	DEL	DGKG	ENST00000265022	human	ensembl	74_37	-1	known	frame_shift_del	c.430	p.L144fs	0.004	NULL	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_EF_hand_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,pfscan_EF_hand_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	DGKG	HGNC	ENSG00000058866				303	0	0	295	28	8.66873
HRASLS	0	genome.wustl.edu	37	3	192980889	192980889	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	192980889	192980889	C	-	DEL	HRASLS	ENST00000264735	human	ensembl	74_37	+1	known	frame_shift_del	c.585	p.P197fs	0.184	pfam_LRAT-like_dom	pfam_LRAT-like_dom	-	no_errors	HRASLS	HGNC	ENSG00000127252				150	1	0.662252	121	9	6.92308
NRROS	0	genome.wustl.edu	37	3	196387867	196387867	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	196387867	196387867	C	-	DEL	NRROS	ENST00000328557	human	ensembl	74_37	+1	known	frame_shift_del	c.1353	p.P453fs	0.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	NRROS	HGNC	ENSG00000174004				233	0	0	230	33	12.5475
PIGZ	0	genome.wustl.edu	37	3	196674301	196674301	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	196674301	196674301	C	-	DEL	PIGZ	ENST00000412723	human	ensembl	74_37	-1	known	frame_shift_del	c.1467	p.T490fs	0.922	NULL	pfam_GPI_mannosylTrfase	-	no_errors	PIGZ	HGNC	ENSG00000119227				82	0	0	84	5	5.61798
DLG1	0	genome.wustl.edu	37	3	196876654	196876654	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	196876654	196876654	G	-	DEL	DLG1	ENST00000346964	human	ensembl	74_37	-1	known	frame_shift_del	c.596	p.P199fs	1.000	pfam_MAGUK_PEST_N,superfamily_PDZ,pirsf_M-assoc_guanylate_kinase	pfam_GK/Ca_channel_bsu,pfam_PDZ,pfam_MAGUK_PEST_N,pfam_L27_1,pfam_PDZ_assoc,pfam_SH3_2,pfam_SH3_domain,superfamily_P-loop_NTPase,superfamily_SH3_domain,superfamily_PDZ,smart_L27,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pirsf_M-assoc_guanylate_kinase,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like	-	no_errors	DLG1	HGNC	ENSG00000075711				248	0	0	191	19	9.04762
GLB1	0	genome.wustl.edu	37	3	33038592	33038593	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	33038592	33038593	-	T	INS	GLB1	ENST00000445488	human	ensembl	74_37	-1	known	frame_shift_ins	c.2123_2122	p.R708fs	0.072:0.062	superfamily_Galactose-bd-like	pfam_Glycoside_Hdrlase_35,pfam_Glyco_hydro_42_N,superfamily_Glycoside_hydrolase_SF,superfamily_Galactose-bd-like,prints_Glycoside_Hdrlase_35	-	no_errors	GLB1	HGNC	ENSG00000170266				138	0	0	129	10	7.19424
CLASP2	0	genome.wustl.edu	37	3	33602361	33602361	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	33602361	33602361	T	-	DEL	CLASP2	ENST00000399362	human	ensembl	74_37	-1	known	frame_shift_del	c.2890	p.M964fs	1.000	superfamily_ARM-type_fold	pfam_CLASP_N_dom,pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	CLASP2	HGNC	ENSG00000163539				311	0	0	169	12	6.62983
TRANK1	0	genome.wustl.edu	37	3	36897426	36897427	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	36897426	36897427	-	A	INS	TRANK1	ENST00000429976	human	ensembl	74_37	-1	known	frame_shift_ins	c.3655_3654	p.L1218fs	0.998:0.993	superfamily_P-loop_NTPase	pfam_UvrD-like_ATP-bd,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_TPR_repeat,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR-contain_dom	-	no_errors	TRANK1	HGNC	ENSG00000168016				162	0	0	160	11	6.43275
SCN10A	0	genome.wustl.edu	37	3	38738885	38738886	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	38738885	38738886	-	T	INS	SCN10A	ENST00000449082	human	ensembl	74_37	-1	known	frame_shift_ins	c.5826_5825	p.N1942fs	0.043:0.052	NULL	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN10A	HGNC	ENSG00000185313				122	0	0	114	11	8.8
SCN10A	0	genome.wustl.edu	37	3	38798323	38798324	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	38798323	38798324	-	A	INS	SCN10A	ENST00000449082	human	ensembl	74_37	-1	known	frame_shift_ins	c.1132_1131	p.V377fs	0.995:0.758	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN10A	HGNC	ENSG00000185313				155	0	0	139	11	7.33333
TTC21A	0	genome.wustl.edu	37	3	39162487	39162488	+	Frame_Shift_Del	DEL	GT	GT	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	GT	GT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	39162487	39162488	GT	-	DEL	TTC21A	ENST00000301819	human	ensembl	74_37	+1	known	frame_shift_del	c.926_925	p.C310fs	1.000:1.000	NULL	pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC21A	HGNC	ENSG00000168026				88	0	0	80	18	18.3673
CTNNB1	0	genome.wustl.edu	37	3	41266654	41266654	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	41266654	41266654	C	-	DEL	CTNNB1	ENST00000349496	human	ensembl	74_37	+1	known	frame_shift_del	c.451	p.R151fs	1.000	superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo,prints_Beta-catenin	-	no_errors	CTNNB1	HGNC	ENSG00000168036				77	0	0	49	12	19.6721
ANO10	0	genome.wustl.edu	37	3	43647213	43647213	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	43647213	43647213	T	-	DEL	ANO10	ENST00000292246	human	ensembl	74_37	-1	known	frame_shift_del	c.132	p.D45fs	1.000	NULL	pfam_Anoctamin	-	no_errors	ANO10	HGNC	ENSG00000160746				61	0	0	56	12	17.6471
ZNF445	0	genome.wustl.edu	37	3	44492863	44492863	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	44492863	44492863	C	-	DEL	ZNF445	ENST00000396077	human	ensembl	74_37	-1	known	frame_shift_del	c.541	p.D181fs	0.027	NULL	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF445	HGNC	ENSG00000185219				152	0	0	151	12	7.36196
EXOSC7	0	genome.wustl.edu	37	3	45049052	45049053	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	45049052	45049053	-	T	INS	EXOSC7	ENST00000265564	human	ensembl	74_37	+1	known	frame_shift_ins	c.756_757	p.E253fs	1.000:1.000	pfam_ExoRNase_PH_dom2,superfamily_ExoRNase_PH_dom2	pfam_ExoRNase_PH_dom1,pfam_ExoRNase_PH_dom2,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_ExoRNase_PH_dom2	-	no_errors	EXOSC7	HGNC	ENSG00000075914				43	0	0	37	5	11.9048
CSPG5	0	genome.wustl.edu	37	3	47618517	47618517	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	47618517	47618517	G	-	DEL	CSPG5	ENST00000383738	human	ensembl	74_37	-1	known	frame_shift_del	c.999	p.G334fs	0.833	NULL	pfam_Chon_Sulph_att,pfam_Neural_ProG_Cyt	-	no_errors	CSPG5	HGNC	ENSG00000114646				55	0	0	54	10	15.625
RBM6	0	genome.wustl.edu	37	3	50005144	50005145	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	50005144	50005145	-	G	INS	RBM6	ENST00000266022	human	ensembl	74_37	+1	known	frame_shift_ins	c.286_287	p.D99fs	1.000:1.000	NULL	pfam_G_patch_dom,smart_RRM_dom,smart_G_patch_dom,pfscan_G_patch_dom,pfscan_RRM_dom	-	no_errors	RBM6	HGNC	ENSG00000004534				157	0	0	134	17	11.2583
IFRD2	0	genome.wustl.edu	37	3	50330205	50330205	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	50330205	50330205	G	-	DEL	IFRD2	ENST00000336089	human	ensembl	74_37	-1	known	frame_shift_del	c.100	p.Q34fs	0.023	NULL	pfam_Interferon-rel_develop_reg_N,pfam_Interferon-rel_develop_reg_C,superfamily_ARM-type_fold	-	no_errors	IFRD2	HGNC	ENSG00000214706				82	0	0	104	7	6.30631
DOCK3	0	genome.wustl.edu	37	3	51417604	51417604	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	51417604	51417604	C	-	DEL	DOCK3	ENST00000266037	human	ensembl	74_37	+1	known	frame_shift_del	c.5549	p.P1852fs	0.115	NULL	pfam_DOCK_C,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK3	HGNC	ENSG00000088538				49	0	0	24	24	50
RBM15B	0	genome.wustl.edu	37	3	51431353	51431353	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	51431353	51431353	G	-	DEL	RBM15B	ENST00000323686	human	ensembl	74_37	+1	known	frame_shift_del	c.2523	p.S844fs	1.000	pfam_SPOC_C,superfamily_SPOC_like_C_dom,pfscan_SPOC_met	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC_like_C_dom,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	RBM15B	HGNC	ENSG00000179837				61	0	0	65	9	12.1622
CACNA1D	0	genome.wustl.edu	37	3	53766931	53766932	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	53766931	53766932	-	A	INS	CACNA1D	ENST00000288139	human	ensembl	74_37	+1	known	frame_shift_ins	c.2623_2624	p.I877fs	1.000:1.000	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su,prints_LVDCC_a1dsu	-	no_errors	CACNA1D	HGNC	ENSG00000157388				103	0	0	81	7	7.95455
ZNF654	0	genome.wustl.edu	37	3	88188521	88188521	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	88188521	88188521	A	-	DEL	ZNF654	ENST00000309495	human	ensembl	74_37	+1	known	frame_shift_del	c.61	p.G23fs	0.999	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF654	HGNC	ENSG00000175105				63	0	0	47	14	22.9508
EPHA3	0	genome.wustl.edu	37	3	89499363	89499363	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	89499363	89499363	C	-	DEL	EPHA3	ENST00000336596	human	ensembl	74_37	+1	known	frame_shift_del	c.2533	p.M847fs	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_2,pfam_SAM_type1,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHA3	HGNC	ENSG00000044524				50	0	0	80	8	9.09091
COL8A1	0	genome.wustl.edu	37	3	99514755	99514755	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	99514755	99514755	G	-	DEL	COL8A1	ENST00000261037	human	ensembl	74_37	+1	known	frame_shift_del	c.2010	p.G672fs	1.000	pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	pfam_Collagen,pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	COL8A1	HGNC	ENSG00000144810				91	0	0	94	15	13.7615
IL17RE	0	genome.wustl.edu	37	3	9953257	9953258	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	3	9953257	9953258	-	C	INS	IL17RE	ENST00000421412	human	ensembl	74_37	+1	known	frame_shift_ins	c.1302_1303	p.V436fs	0.018:0.020	NULL	pfam_SEFIR	-	no_errors	IL17RE	HGNC	ENSG00000163701				134	1	0.740741	163	10	5.78035
SLC39A8	0	genome.wustl.edu	37	4	103189225	103189225	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	103189225	103189225	T	-	DEL	SLC39A8	ENST00000356736	human	ensembl	74_37	-1	known	frame_shift_del	c.852	p.E285fs	0.000	pfam_ZIP	pfam_ZIP	-	no_errors	SLC39A8	HGNC	ENSG00000138821				163	0	0	159	11	6.47059
INTS12	0	genome.wustl.edu	37	4	106613138	106613138	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	106613138	106613138	T	-	DEL	INTS12	ENST00000340139	human	ensembl	74_37	-1	known	frame_shift_del	c.652	p.R218fs	0.999	superfamily_Znf_FYVE_PHD	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	INTS12	HGNC	ENSG00000138785				27	0	0	19	6	24
C4orf21	0	genome.wustl.edu	37	4	113538885	113538886	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	113538885	113538886	-	T	INS	C4orf21	ENST00000505019	human	ensembl	74_37	-1	known	frame_shift_ins	c.2313_2312	p.H772fs	0.002:0.003	NULL	pfam_DUF2439,pfam_Znf_GRF,superfamily_P-loop_NTPase	-	no_errors	C4orf21	HGNC	ENSG00000138658				110	0	0	90	10	10
QRFPR	0	genome.wustl.edu	37	4	122250740	122250740	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	122250740	122250740	T	-	DEL	QRFPR	ENST00000394427	human	ensembl	74_37	-1	known	frame_shift_del	c.1025	p.N342fs	1.000	pfam_7TM_GPCR_olfarory/Srsx,prints_NPY_rcpt,prints_NPFF_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_NPY_rcpt,prints_NPFF_rcpt	-	no_errors	QRFPR	HGNC	ENSG00000186867				101	0	0	77	11	12.5
EXOSC9	0	genome.wustl.edu	37	4	122723894	122723894	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	122723894	122723894	T	-	DEL	EXOSC9	ENST00000379663	human	ensembl	74_37	+1	known	frame_shift_del	c.227	p.F78fs	1.000	pfam_ExoRNase_PH_dom1,superfamily_Ribosomal_S5_D2-typ_fold	pfam_ExoRNase_PH_dom1,pfam_ExoRNase_PH_dom2,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_ExoRNase_PH_dom2	-	no_errors	EXOSC9	HGNC	ENSG00000123737				134	0	0	81	20	19.802
KIAA1109	0	genome.wustl.edu	37	4	123145659	123145659	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	123145659	123145659	C	-	DEL	KIAA1109	ENST00000264501	human	ensembl	74_37	+1	known	frame_shift_del	c.2620	p.P875fs	1.000	NULL	pfam_Fragile_site-assoc_C	-	no_errors	KIAA1109	HGNC	ENSG00000138688				41	0	0	36	12	25
SCLT1	0	genome.wustl.edu	37	4	129869675	129869675	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	129869675	129869675	T	-	DEL	SCLT1	ENST00000281142	human	ensembl	74_37	-1	known	frame_shift_del	c.1269	p.A424fs	1.000	NULL	NULL	-	no_errors	SCLT1	HGNC	ENSG00000151466				97	0	0	58	9	13.4328
SCLT1	0	genome.wustl.edu	37	4	129924995	129924995	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	129924995	129924995	T	-	DEL	SCLT1	ENST00000281142	human	ensembl	74_37	-1	known	frame_shift_del	c.327	p.K109fs	0.840	NULL	NULL	-	no_errors	SCLT1	HGNC	ENSG00000151466				128	1	0.775194	86	9	9.47368
PCDH10	0	genome.wustl.edu	37	4	134071648	134071649	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	134071648	134071649	-	C	INS	PCDH10	ENST00000264360	human	ensembl	74_37	+1	known	frame_shift_ins	c.353_354	p.S121fs	1.000:1.000	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH10	HGNC	ENSG00000138650				70	0	0	44	13	22.807
CLGN	0	genome.wustl.edu	37	4	141313502	141313502	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	141313502	141313502	T	-	DEL	CLGN	ENST00000325617	human	ensembl	74_37	-1	known	frame_shift_del	c.1522	p.T508fs	0.000	NULL	pfam_Calret/calnex,superfamily_ConA-like_lec_gl_sf,superfamily_Calreticulin/calnexin_P_dom,prints_Calret/calnex	-	no_errors	CLGN	HGNC	ENSG00000153132				155	0	0	99	25	20.1613
SMAD1	0	genome.wustl.edu	37	4	146475083	146475083	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	146475083	146475083	T	-	DEL	SMAD1	ENST00000302085	human	ensembl	74_37	+1	known	frame_shift_del	c.1145	p.F383fs	1.000	pfam_SMAD_dom_Dwarfin-type,pfam_Interferon_reg_factor-3,superfamily_SMAD_FHA_domain,smart_SMAD_dom_Dwarfin-type,pfscan_SMAD_dom_Dwarfin-type	pfam_SMAD_dom_Dwarfin-type,pfam_MAD_homology1_Dwarfin-type,pfam_Interferon_reg_factor-3,superfamily_SMAD_FHA_domain,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,smart_SMAD_dom_Dwarfin-type,pfscan_MAD_homology_MH1,pfscan_SMAD_dom_Dwarfin-type	-	no_errors	SMAD1	HGNC	ENSG00000170365				135	0	0	78	19	19.5876
TRIM2	0	genome.wustl.edu	37	4	154191516	154191516	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	154191516	154191516	C	-	DEL	TRIM2	ENST00000338700	human	ensembl	74_37	+1	known	frame_shift_del	c.60	p.P22fs	1.000	NULL	pfam_NHL_repeat,pfam_Filamin/ABP280_repeat-like,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_Ig_E-set,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Filamin,pfscan_Filamin/ABP280_repeat-like,pfscan_NHL_repeat_subgr,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM2	HGNC	ENSG00000109654				123	0	0	133	8	5.67376
FGFBP2	0	genome.wustl.edu	37	4	15964183	15964183	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	15964183	15964183	G	-	DEL	FGFBP2	ENST00000259989	human	ensembl	74_37	-1	known	frame_shift_del	c.570	p.R191fs	0.009	pfam_FGF1-bd	pfam_FGF1-bd	-	no_errors	FGFBP2	HGNC	ENSG00000137441				173	0	0	180	11	5.75916
DDX60	0	genome.wustl.edu	37	4	169182015	169182016	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	169182015	169182016	-	A	INS	DDX60	ENST00000393743	human	ensembl	74_37	-1	known	frame_shift_ins	c.3399_3398	p.L1133fs	1.000:0.961	superfamily_P-loop_NTPase	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX60	HGNC	ENSG00000137628				100	0	0	89	6	6.31579
FGFR3	0	genome.wustl.edu	37	4	1806180	1806181	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	1806180	1806181	-	C	INS	FGFR3	ENST00000340107	human	ensembl	74_37	+1	known	frame_shift_ins	c.1205_1206	p.K405fs	0.996:0.987	pirsf_FGF_rcpt_fam	pirsf_FGF_rcpt_fam,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	FGFR3	HGNC	ENSG00000068078				231	0	0	235	44	15.7706
POLN	0	genome.wustl.edu	37	4	2194956	2194956	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	2194956	2194956	A	-	DEL	POLN	ENST00000382865	human	ensembl	74_37	-1	known	frame_shift_del	c.996	p.F332fs	0.343	superfamily_RNaseH-like_dom	pfam_DNA-dir_DNA_pol_A_palm_dom,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_A_palm_dom,prints_DNA_polymerase_A	-	no_errors	POLN	HGNC	ENSG00000130997				90	0	0	45	7	13.4615
HAUS3	0	genome.wustl.edu	37	4	2242244	2242246	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	2242244	2242246	CTT	-	DEL	HAUS3	ENST00000243706	human	ensembl	74_37	-1	known	in_frame_del	c.430_428	p.E143in_frame_del	0.023:0.001:0.000	NULL	NULL	-	no_errors	HAUS3	HGNC	ENSG00000214367				153	0	0	97	17	14.9123
FAM193A	0	genome.wustl.edu	37	4	2661593	2661593	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	2661593	2661593	C	-	DEL	FAM193A	ENST00000324666	human	ensembl	74_37	+1	known	frame_shift_del	c.684	p.V231fs	0.995	NULL	NULL	-	no_errors	FAM193A	HGNC	ENSG00000125386				122	0	0	141	11	7.23684
TBC1D19	0	genome.wustl.edu	37	4	26638843	26638843	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	26638843	26638843	A	-	DEL	TBC1D19	ENST00000264866	human	ensembl	74_37	+1	known	frame_shift_del	c.305	p.R104fs	1.000	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D19	HGNC	ENSG00000109680				124	0	0	64	11	14.6667
TLR6	0	genome.wustl.edu	37	4	38829466	38829467	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	38829466	38829467	-	T	INS	TLR6	ENST00000381950	human	ensembl	74_37	-1	known	frame_shift_ins	c.1629_1628	p.N543fs	0.000:0.000	pirsf_Toll-like_receptor,smart_Cys-rich_flank_reg_C	pirsf_Toll-like_receptor,pfam_TIR_dom,pfam_Leu-rich_rpt,pfam_Cys-rich_flank_reg_C,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR6	HGNC	ENSG00000174130				357	0	0	307	29	8.63095
RBM47	0	genome.wustl.edu	37	4	40434705	40434713	+	In_Frame_Del	DEL	GCGGCTGCG	GCGGCTGCG	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	GCGGCTGCG	GCGGCTGCG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	40434705	40434713	GCGGCTGCG	-	DEL	RBM47	ENST00000295971	human	ensembl	74_37	-1	known	in_frame_del	c.1505_1497	p.AAA500in_frame_del	0.745:0.762:0.680:0.800:0.820:0.779:0.989:0.994:0.985	tigrfam_HnRNP_R/Q_splicing_fac	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	-	no_errors	RBM47	HGNC	ENSG00000163694				72	0	0	50	10	16.6667
GNPDA2	0	genome.wustl.edu	37	4	44719209	44719210	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	44719209	44719210	-	T	INS	GNPDA2	ENST00000295448	human	ensembl	74_37	-1	known	frame_shift_ins	c.330_329	p.N110fs	1.000:1.000	pfam_Glc/Gal-6P_isomerase,tigrfam_Glucosamine6P_isomerase	pfam_Glc/Gal-6P_isomerase,tigrfam_Glucosamine6P_isomerase	-	no_errors	GNPDA2	HGNC	ENSG00000163281				123	0	0	67	16	19.2771
GABRB1	0	genome.wustl.edu	37	4	47427976	47427976	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	47427976	47427976	T	-	DEL	GABRB1	ENST00000295454	human	ensembl	74_37	+1	known	frame_shift_del	c.1366	p.F457fs	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,prints_GABAAb_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRB1	HGNC	ENSG00000163288				151	0	0	124	14	10.1449
EVC	0	genome.wustl.edu	37	4	5785362	5785362	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	5785362	5785362	C	-	DEL	EVC	ENST00000264956	human	ensembl	74_37	+1	known	frame_shift_del	c.1647	p.P551fs	0.460	NULL	NULL	-	no_errors	EVC	HGNC	ENSG00000072840				109	0	0	90	13	12.6214
CENPC	0	genome.wustl.edu	37	4	68385053	68385053	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	68385053	68385053	T	-	DEL	CENPC	ENST00000273853	human	ensembl	74_37	-1	known	frame_shift_del	c.499	p.T167fs	0.003	NULL	pfam_Mif2/CENP-C_cupin,pfam_Cupin_2,superfamily_RmlC_Cupin	-	no_errors	CENPC	HGNC	ENSG00000145241				172	0	0	143	8	5.29801
GNRHR	0	genome.wustl.edu	37	4	68610421	68610421	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	68610421	68610421	A	-	DEL	GNRHR	ENST00000226413	human	ensembl	74_37	-1	known	frame_shift_del	c.607	p.S203fs	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GphnRH_fam_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GphnRH_fam_rcpt,prints_GPCR_Rhodpsn,prints_Vasoprsn_rcpt	-	no_errors	GNRHR	HGNC	ENSG00000109163				147	0	0	118	8	6.34921
GNRHR	0	genome.wustl.edu	37	4	68619880	68619880	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	68619880	68619880	C	-	DEL	GNRHR	ENST00000226413	human	ensembl	74_37	-1	known	frame_shift_del	c.174	p.K59fs	0.908	pfscan_GPCR_Rhodpsn_7TM,prints_GphnRH_fam_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GphnRH_fam_rcpt,prints_GPCR_Rhodpsn,prints_Vasoprsn_rcpt	-	no_errors	GNRHR	HGNC	ENSG00000109163				140	0	0	96	8	7.69231
YTHDC1	0	genome.wustl.edu	37	4	69185860	69185861	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	69185860	69185861	-	G	INS	YTHDC1	ENST00000344157	human	ensembl	74_37	-1	known	frame_shift_ins	c.1665_1664	p.E556fs	1.000:1.000	NULL	pfam_YTH_domain,pfscan_YTH_domain	-	no_errors	YTHDC1	HGNC	ENSG00000083896				88	0	0	67	11	14.1026
MOB1B	0	genome.wustl.edu	37	4	71844995	71844995	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	71844995	71844995	T	-	DEL	MOB1B	ENST00000309395	human	ensembl	74_37	+1	known	frame_shift_del	c.560	p.F189fs	1.000	pfam_Mob1_phocein,superfamily_Mob1_phocein	pfam_Mob1_phocein,superfamily_Mob1_phocein	-	no_errors	MOB1B	HGNC	ENSG00000173542				150	0	0	122	8	6.15385
HNRNPDL	0	genome.wustl.edu	37	4	83348623	83348623	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	83348623	83348623	A	-	DEL	HNRNPDL	ENST00000295470	human	ensembl	74_37	-1	known	frame_shift_del	c.869	p.L290fs	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HNRNPDL	HGNC	ENSG00000152795				85	0	0	63	14	18.1818
HPSE	0	genome.wustl.edu	37	4	84240519	84240520	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	84240519	84240520	-	T	INS	HPSE	ENST00000311412	human	ensembl	74_37	-1	known	frame_shift_ins	c.477_476	p.F160fs	0.998:0.976	superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_79,superfamily_Glycoside_hydrolase_SF	-	no_errors	HPSE	HGNC	ENSG00000173083				186	0	0	157	13	7.64706
PTPN13	0	genome.wustl.edu	37	4	87690974	87690974	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	4	87690974	87690974	T	-	DEL	PTPN13	ENST00000436978	human	ensembl	74_37	+1	known	frame_shift_del	c.4557	p.S1521fs	1.000	pirsf_Tyr_Pase_non-rcpt_typ-13,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pirsf_Tyr_Pase_non-rcpt_typ-13,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_PDZ,pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_FERM_central,superfamily_PDZ,superfamily_PAZ_dom,smart_KIND,smart_Band_41_domain,smart_PDZ,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam,pfscan_FERM_domain,pfscan_PDZ,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN13	HGNC	ENSG00000163629				104	0	0	59	14	19.1781
SLC12A7	0	genome.wustl.edu	37	5	1074698	1074698	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	1074698	1074698	G	-	DEL	SLC12A7	ENST00000264930	human	ensembl	74_37	-1	known	frame_shift_del	c.2056	p.H686fs	1.000	pfam_AA-permease/SLC12A_dom,tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease/SLC12A_dom,prints_KCL_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A7	HGNC	ENSG00000113504				73	0	0	62	7	10.1449
WDR36	0	genome.wustl.edu	37	5	110428317	110428320	+	Splice_Site	DEL	GTGA	GTGA	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	GTGA	GTGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	110428317	110428320	GTGA	-	DEL	WDR36	ENST00000506538	human	ensembl	74_37	+1	known	splice_site_del	c.330+1_330+1	e1+1	1.000:1.000:1.000:1.000	-	-	-	no_errors	WDR36	HGNC	ENSG00000134987				53	0	0	35	9	20.4545
KCNN2	0	genome.wustl.edu	37	5	113822749	113822749	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	113822749	113822749	A	-	DEL	KCNN2	ENST00000264773	human	ensembl	74_37	+1	known	frame_shift_del	c.1257	p.N421fs	1.000	pfam_CaM-bd_dom,superfamily_CaM-bd_dom	pfam_K_chnl_Ca-activ_SK,pfam_CaM-bd_dom,pfam_2pore_dom_K_chnl_dom,superfamily_CaM-bd_dom,prints_K_chnl_Ca-activ_SK	-	no_errors	KCNN2	HGNC	ENSG00000080709				89	0	0	62	9	12.6761
ATG12	0	genome.wustl.edu	37	5	115177087	115177087	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	115177087	115177087	T	-	DEL	ATG12	ENST00000274459	human	ensembl	74_37	-1	known	frame_shift_del	c.304	p.I102fs	1.000	pfam_Atg12	pfam_Atg12,pfam_Atg8_fam	-	no_errors	ATG12	HGNC	ENSG00000145782				55	0	0	48	12	20
MEGF10	0	genome.wustl.edu	37	5	126792986	126792988	+	In_Frame_Del	DEL	CAA	CAA	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	CAA	CAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	126792986	126792988	CAA	-	DEL	MEGF10	ENST00000274473	human	ensembl	74_37	+1	known	in_frame_del	c.3399_3401	p.N1134in_frame_del	0.167:0.158:0.157	NULL	pfam_EGF_laminin,pfam_EGF_extracell,superfamily_Proteinase_amylase_inhib_dom,smart_EG-like_dom,smart_EGF_laminin,pfscan_EG-like_dom,pfscan_EMI_domain	-	no_errors	MEGF10	HGNC	ENSG00000145794				76	0	0	51	12	19.0476
SHROOM1	0	genome.wustl.edu	37	5	132159772	132159773	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	132159772	132159773	-	C	INS	SHROOM1	ENST00000378679	human	ensembl	74_37	-1	known	frame_shift_ins	c.1581_1580	p.T528fs	0.002:0.007	NULL	pfam_ASD2,pfam_ASD1	-	no_errors	SHROOM1	HGNC	ENSG00000164403				41	0	0	29	11	27.5
DNAH5	0	genome.wustl.edu	37	5	13701426	13701426	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	13701426	13701426	A	-	DEL	DNAH5	ENST00000265104	human	ensembl	74_37	-1	known	frame_shift_del	c.13458	p.F4486fs	1.000	pfam_Dynein_heavy_dom	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139				140	0	0	96	11	10.2804
KDM3B	0	genome.wustl.edu	37	5	137721747	137721749	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	137721747	137721749	AAG	-	DEL	KDM3B	ENST00000314358	human	ensembl	74_37	+1	known	in_frame_del	c.817_819	p.K275in_frame_del	1.000:1.000:1.000	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	KDM3B	HGNC	ENSG00000120733				188	0	0	156	23	12.8492
EGR1	0	genome.wustl.edu	37	5	137803132	137803132	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	137803132	137803132	C	-	DEL	EGR1	ENST00000239938	human	ensembl	74_37	+1	known	frame_shift_del	c.994	p.H334fs	1.000	NULL	pfam_DUF3432,pfam_DUF3446,pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	EGR1	HGNC	ENSG00000120738				108	0	0	108	13	10.7438
WDR55	0	genome.wustl.edu	37	5	140049102	140049102	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	140049102	140049102	A	-	DEL	WDR55	ENST00000358337	human	ensembl	74_37	+1	known	frame_shift_del	c.1015	p.K341fs	1.000	pirsf_WD_repeat_p55	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_WD_repeat_p55,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR55	HGNC	ENSG00000120314				31	0	0	25	6	19.3548
PCDHA4	0	genome.wustl.edu	37	5	140187395	140187395	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	140187395	140187395	T	-	DEL	PCDHA4	ENST00000530339	human	ensembl	74_37	+1	known	frame_shift_del	c.623	p.L210fs	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA4	HGNC	ENSG00000204967				142	0	0	83	25	23.1481
PCDHA4	0	genome.wustl.edu	37	5	140188622	140188623	+	Frame_Shift_Del	DEL	GC	GC	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	GC	GC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	140188622	140188623	GC	-	DEL	PCDHA4	ENST00000530339	human	ensembl	74_37	+1	known	frame_shift_del	c.1850_1851	p.R619fs	0.000:0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA4	HGNC	ENSG00000204967				77	0	0	79	10	11.236
PCDHA13	0	genome.wustl.edu	37	5	140263181	140263182	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	140263181	140263182	-	G	INS	PCDHA13	ENST00000289272	human	ensembl	74_37	+1	known	frame_shift_ins	c.1328_1329	p.V445fs	0.998:0.954	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA13	HGNC	ENSG00000239389				125	0	0	135	12	8.16327
PCDHB3	0	genome.wustl.edu	37	5	140480418	140480418	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	140480418	140480418	G	-	DEL	PCDHB3	ENST00000231130	human	ensembl	74_37	+1	known	frame_shift_del	c.185	p.A64fs	0.071	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB3	HGNC	ENSG00000113205				131	0	0	113	7	5.83333
PCDHB7	0	genome.wustl.edu	37	5	140554145	140554145	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	140554145	140554145	C	-	DEL	PCDHB7	ENST00000231137	human	ensembl	74_37	+1	known	frame_shift_del	c.1729	p.R578fs	1.000	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB7	HGNC	ENSG00000113212				108	0	0	106	9	7.82609
PCDH1	0	genome.wustl.edu	37	5	141243331	141243332	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	141243331	141243332	AA	-	DEL	PCDH1	ENST00000287008	human	ensembl	74_37	-1	known	frame_shift_del	c.2565_2564	p.F855fs	0.981:1.000	pfam_Protocadherin	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH1	HGNC	ENSG00000156453				330	0	0	262	32	10.8844
KIAA0141	0	genome.wustl.edu	37	5	141309634	141309635	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	141309634	141309635	-	A	INS	KIAA0141	ENST00000194118	human	ensembl	74_37	+1	known	frame_shift_ins	c.652_653	p.E220fs	0.032:0.081	NULL	pfam_Sel1-like,smart_Sel1-like	-	no_errors	KIAA0141	HGNC	ENSG00000081791				53	0	0	67	8	10.6667
GLRA1	0	genome.wustl.edu	37	5	151239422	151239422	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	151239422	151239422	C	-	DEL	GLRA1	ENST00000455880	human	ensembl	74_37	-1	known	frame_shift_del	c.400	p.A134fs	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,prints_Glycine_rcpt_A,prints_Glycine_rcpt_A1,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GLRA1	HGNC	ENSG00000145888				100	0	0	98	6	5.76923
GABRG2	0	genome.wustl.edu	37	5	161524661	161524662	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	161524661	161524662	-	T	INS	GABRG2	ENST00000356592	human	ensembl	74_37	+1	known	frame_shift_ins	c.345_346	p.A117fs	0.997:1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,prints_Neur_channel,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABBAg_rcpt,prints_GABAA_rcpt,prints_GABBAg2_rcpt,prints_GABAAa_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GABRG2	HGNC	ENSG00000113327				138	0	0	86	8	8.51064
GABRG2	0	genome.wustl.edu	37	5	161580217	161580218	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	161580217	161580218	-	T	INS	GABRG2	ENST00000356592	human	ensembl	74_37	+1	known	frame_shift_ins	c.1271_1272	p.C427fs	1.000:0.994	superfamily_Neurotrans-gated_channel_TM,prints_GABBAg_rcpt	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABBAg_rcpt,prints_GABAA_rcpt,prints_GABBAg2_rcpt,prints_GABAAa_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GABRG2	HGNC	ENSG00000113327				153	1	0.649351	131	11	7.74648
PLEKHG4B	0	genome.wustl.edu	37	5	163580	163580	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	163580	163580	C	-	DEL	PLEKHG4B	ENST00000283426	human	ensembl	74_37	+1	known	frame_shift_del	c.2325	p.P777fs	0.999	NULL	pfam_DH-domain,superfamily_DH-domain,superfamily_CRAL-TRIO_dom,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG4B	HGNC	ENSG00000153404				30	0	0	37	9	19.5652
MYO10	0	genome.wustl.edu	37	5	16694606	16694606	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	16694606	16694606	C	-	DEL	MYO10	ENST00000513610	human	ensembl	74_37	-1	known	frame_shift_del	c.3674	p.G1225fs	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_Pleckstrin_homology,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,pfam_Ras-assoc,superfamily_P-loop_NTPase,superfamily_FERM_central,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Pleckstrin_homology,smart_MyTH4_dom,smart_Band_41_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_Pleckstrin_homology,prints_Myosin_head_motor_dom	-	no_errors	MYO10	HGNC	ENSG00000145555				120	0	0	103	12	10.4348
WWC1	0	genome.wustl.edu	37	5	167896000	167896001	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	167896000	167896001	CT	-	DEL	WWC1	ENST00000265293	human	ensembl	74_37	+1	known	frame_shift_del	c.3320_3321	p.S1109fs	0.916:0.912	NULL	pfam_WW_dom,superfamily_C2_dom,superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom	-	no_errors	WWC1	HGNC	ENSG00000113645				122	0	0	112	10	8.19672
GRM6	0	genome.wustl.edu	37	5	178418554	178418555	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	178418554	178418555	-	C	INS	GRM6	ENST00000231188	human	ensembl	74_37	-1	known	frame_shift_ins	c.728_727	p.V243fs	1.000:0.986	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,prints_GPCR_3_mtglu_rcpt	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_6,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_4	-	no_errors	GRM6	HGNC	ENSG00000113262				133	0	0	138	23	14.2857
CANX	0	genome.wustl.edu	37	5	179149920	179149920	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	179149920	179149920	T	-	DEL	CANX	ENST00000415618	human	ensembl	74_37	+1	known	frame_shift_del	c.1403	p.F470fs	1.000	pfam_Calret/calnex,superfamily_ConA-like_lec_gl_sf,prints_Calret/calnex	pfam_Calret/calnex,superfamily_ConA-like_lec_gl_sf,superfamily_Calreticulin/calnexin_P_dom,prints_Calret/calnex	-	no_errors	CANX	HGNC	ENSG00000127022				142	0	0	114	11	8.8
ADAMTS12	0	genome.wustl.edu	37	5	33881513	33881513	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	33881513	33881513	A	-	DEL	ADAMTS12	ENST00000504830	human	ensembl	74_37	-1	known	frame_shift_del	c.200	p.L67fs	0.721	pfam_Peptidase_M12B_N	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS12	HGNC	ENSG00000151388				208	0	0	145	29	16.6667
IL7R	0	genome.wustl.edu	37	5	35874636	35874637	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	35874636	35874637	-	A	INS	IL7R	ENST00000303115	human	ensembl	74_37	+1	known	frame_shift_ins	c.792_793	p.R266fs	1.000:0.967	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3	-	no_errors	IL7R	HGNC	ENSG00000168685				105	0	0	95	12	11.215
FYB	0	genome.wustl.edu	37	5	39202091	39202091	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	39202091	39202091	C	-	DEL	FYB	ENST00000540520	human	ensembl	74_37	-1	known	frame_shift_del	c.1002	p.P335fs	0.001	NULL	pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain	-	no_errors	FYB	HGNC	ENSG00000082074				110	0	0	88	20	18.5185
PRKAA1	0	genome.wustl.edu	37	5	40769572	40769572	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	40769572	40769572	A	-	DEL	PRKAA1	ENST00000354209	human	ensembl	74_37	-1	known	frame_shift_del	c.587	p.L196fs	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_KA1/Ssp2_C,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	PRKAA1	HGNC	ENSG00000132356				264	0	0	173	38	18.0095
MED10	0	genome.wustl.edu	37	5	6372636	6372636	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	6372636	6372636	C	-	DEL	MED10	ENST00000255764	human	ensembl	74_37	-1	known	frame_shift_del	c.388	p.E130fs	1.000	NULL	pfam_Mediator_Med10	-	no_errors	MED10	HGNC	ENSG00000133398				110	0	0	84	14	14.2857
SREK1IP1	0	genome.wustl.edu	37	5	64023941	64023941	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	64023941	64023941	T	-	DEL	SREK1IP1	ENST00000513458	human	ensembl	74_37	-1	known	frame_shift_del	c.271	p.R91fs	1.000	NULL	superfamily_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	SREK1IP1	HGNC	ENSG00000153006				18	0	0	7	6	46.1538
GCNT4	0	genome.wustl.edu	37	5	74324982	74324983	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	74324982	74324983	-	G	INS	GCNT4	ENST00000322348	human	ensembl	74_37	-1	known	frame_shift_ins	c.881_880	p.H294fs	0.920:0.913	pfam_Glyco_trans_14	pfam_Glyco_trans_14	-	no_errors	GCNT4	HGNC	ENSG00000176928				112	0	0	90	8	8.16327
HMGCR	0	genome.wustl.edu	37	5	74646145	74646147	+	In_Frame_Del	DEL	AGA	AGA	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	74646145	74646147	AGA	-	DEL	HMGCR	ENST00000287936	human	ensembl	74_37	+1	known	in_frame_del	c.726_728	p.E246in_frame_del	1.000:1.000:1.000	pfam_Patched,tigrfam_HMG_CoA_Rdtase_metazoan	pfam_HMG_CoA_Rdtase,pfam_Patched,superfamily_HMG_CoA_Rdtase_sub-bd,superfamily_HMG_CoA_Rdtase_NAD(P)-bd,pfscan_SSD,pfscan_HMG_CoA_Rdtase,prints_HMG_CoA_Rdtase,tigrfam_HMG_CoA_Rdtase_metazoan,tigrfam_HMG_CoA_Rdtase_eu_arc	-	no_errors	HMGCR	HGNC	ENSG00000113161				74	0	0	48	10	17.2414
WDR41	0	genome.wustl.edu	37	5	76729042	76729042	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	76729042	76729042	T	-	DEL	WDR41	ENST00000296679	human	ensembl	74_37	-1	known	frame_shift_del	c.1298	p.N433fs	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR41	HGNC	ENSG00000164253				104	0	0	90	16	15.0943
AP3B1	0	genome.wustl.edu	37	5	77334907	77334907	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	77334907	77334907	T	-	DEL	AP3B1	ENST00000255194	human	ensembl	74_37	-1	known	frame_shift_del	c.2769	p.K923fs	0.419	pirsf_AP3_beta	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP3_beta	-	no_errors	AP3B1	HGNC	ENSG00000132842				95	0	0	78	6	7.14286
FASTKD3	0	genome.wustl.edu	37	5	7867769	7867769	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	7867769	7867769	T	-	DEL	FASTKD3	ENST00000264669	human	ensembl	74_37	-1	known	frame_shift_del	c.428	p.K143fs	0.000	NULL	pfam_FAST_2,pfam_FAST_Leu-rich,pfam_RAP,smart_RAP	-	no_errors	FASTKD3	HGNC	ENSG00000124279				117	0	0	74	16	17.7778
CMYA5	0	genome.wustl.edu	37	5	79030050	79030050	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	79030050	79030050	A	-	DEL	CMYA5	ENST00000446378	human	ensembl	74_37	+1	known	frame_shift_del	c.5462	p.K1823fs	0.031	NULL	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	-	no_errors	CMYA5	HGNC	ENSG00000164309				109	0	0	110	6	5.17241
VCAN	0	genome.wustl.edu	37	5	82832989	82832990	+	In_Frame_Ins	INS	-	-	GAA			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	82832989	82832990	-	GAA	INS	VCAN	ENST00000265077	human	ensembl	74_37	+1	known	in_frame_ins	c.4167_4168	p.1393in_frame_insE	0.854:0.995	NULL	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_EG-like_dom,pfam_Sushi_SCR_CCP,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_Ig_sub,smart_Link,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like_dom,prints_Link	-	no_errors	VCAN	HGNC	ENSG00000038427				61	0	0	48	7	12.7273
BRD9	0	genome.wustl.edu	37	5	889777	889777	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	889777	889777	A	-	DEL	BRD9	ENST00000323510	human	ensembl	74_37	-1	known	frame_shift_del	c.38	p.F13fs	0.002	NULL	pfam_DUF3512,pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRD9	HGNC	ENSG00000028310				55	0	0	43	10	18.8679
FAM81B	0	genome.wustl.edu	37	5	94782312	94782312	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	94782312	94782312	A	-	DEL	FAM81B	ENST00000283357	human	ensembl	74_37	+1	known	frame_shift_del	c.940	p.K315fs	0.856	NULL	NULL	-	no_errors	FAM81B	HGNC	ENSG00000153347				55	0	0	37	8	17.7778
TTC37	0	genome.wustl.edu	37	5	94878927	94878927	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	5	94878927	94878927	T	-	DEL	TTC37	ENST00000358746	human	ensembl	74_37	-1	known	frame_shift_del	c.195	p.A66fs	1.000	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC37	HGNC	ENSG00000198677				156	0	0	116	29	20
MCHR2	0	genome.wustl.edu	37	6	100382358	100382358	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	100382358	100382358	A	-	DEL	MCHR2	ENST00000281806	human	ensembl	74_37	-1	known	frame_shift_del	c.623	p.F208fs	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_MCH2_receptor,prints_GPCR_Rhodpsn,prints_MCH_rcpt	-	no_errors	MCHR2	HGNC	ENSG00000152034				176	0	0	85	23	21.2963
MCHR2	0	genome.wustl.edu	37	6	100395720	100395721	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	100395720	100395721	-	C	INS	MCHR2	ENST00000281806	human	ensembl	74_37	-1	known	frame_shift_ins	c.310_309	p.P103fs	0.986:0.948	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_MCH2_receptor,prints_MCH_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_MCH2_receptor,prints_GPCR_Rhodpsn,prints_MCH_rcpt	-	no_errors	MCHR2	HGNC	ENSG00000152034				194	0	0	148	13	8.07453
PRDM1	0	genome.wustl.edu	37	6	106552769	106552770	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	106552769	106552770	AG	-	DEL	PRDM1	ENST00000369096	human	ensembl	74_37	+1	known	frame_shift_del	c.734_735	p.E247fs	1.000:1.000	pirsf_Znf_PRDM1	pfam_Znf_C2H2,pfam_SET_dom,smart_SET_dom,smart_Znf_C2H2-like,pirsf_Znf_PRDM1,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM1	HGNC	ENSG00000057657				324	0	0	321	47	12.7717
QRSL1	0	genome.wustl.edu	37	6	107090936	107090936	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	107090936	107090936	A	-	DEL	QRSL1	ENST00000369046	human	ensembl	74_37	+1	known	frame_shift_del	c.351	p.T119fs	1.000	pfam_Amidase,superfamily_Amidase_dom,tigrfam_GatA	pfam_Amidase,superfamily_Amidase_dom,tigrfam_GatA	-	no_errors	QRSL1	HGNC	ENSG00000130348				73	0	0	58	8	12.1212
NR2E1	0	genome.wustl.edu	37	6	108508599	108508599	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	108508599	108508599	A	-	DEL	NR2E1	ENST00000368986	human	ensembl	74_37	+1	known	frame_shift_del	c.1090	p.T366fs	1.000	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt	-	no_errors	NR2E1	HGNC	ENSG00000112333				240	0	0	189	13	6.43564
SYCP2L	0	genome.wustl.edu	37	6	10903157	10903158	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	10903157	10903158	-	A	INS	SYCP2L	ENST00000283141	human	ensembl	74_37	+1	known	frame_shift_ins	c.602_603	p.F204fs	0.228:0.010	NULL	NULL	-	no_errors	SYCP2L	HGNC	ENSG00000153157				85	0	0	73	5	6.41026
PPIL6	0	genome.wustl.edu	37	6	109740430	109740430	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	109740430	109740430	T	-	DEL	PPIL6	ENST00000521072	human	ensembl	74_37	-1	known	frame_shift_del	c.648	p.G217fs	1.000	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	PPIL6	HGNC	ENSG00000185250				253	0	0	148	36	19.5652
PPIL6	0	genome.wustl.edu	37	6	109757309	109757309	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	109757309	109757309	T	-	DEL	PPIL6	ENST00000521072	human	ensembl	74_37	-1	known	frame_shift_del	c.229	p.R77fs	1.000	NULL	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	PPIL6	HGNC	ENSG00000185250				193	0	0	122	25	17.0068
SLC16A10	0	genome.wustl.edu	37	6	111498763	111498763	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	111498763	111498763	A	-	DEL	SLC16A10	ENST00000368851	human	ensembl	74_37	+1	known	frame_shift_del	c.837	p.I282fs	0.651	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A10	HGNC	ENSG00000112394				118	0	0	90	12	11.7647
KIAA1919	0	genome.wustl.edu	37	6	111587361	111587361	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	111587361	111587361	T	-	DEL	KIAA1919	ENST00000368847	human	ensembl	74_37	+1	known	frame_shift_del	c.596	p.C202fs	0.469	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	KIAA1919	HGNC	ENSG00000173214				65	0	0	45	9	16.6667
NT5DC1	0	genome.wustl.edu	37	6	116542291	116542291	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	116542291	116542291	A	-	DEL	NT5DC1	ENST00000319550	human	ensembl	74_37	+1	known	frame_shift_del	c.604	p.K203fs	0.992	pfam_HAD-SF_hydro_IG_5-nucl,superfamily_HAD-like_dom	pfam_HAD-SF_hydro_IG_5-nucl,superfamily_HAD-like_dom	-	no_errors	NT5DC1	HGNC	ENSG00000178425				145	0	0	82	15	15.4639
ZUFSP	0	genome.wustl.edu	37	6	116967058	116967058	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	116967058	116967058	T	-	DEL	ZUFSP	ENST00000368576	human	ensembl	74_37	-1	known	frame_shift_del	c.1508	p.N503fs	1.000	pfam_Peptidase_C78_UfSP1/2	pfam_Peptidase_C78_UfSP1/2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZUFSP	HGNC	ENSG00000153975				137	0	0	82	24	22.6415
TRDN	0	genome.wustl.edu	37	6	123759209	123759209	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	123759209	123759209	T	-	DEL	TRDN	ENST00000398178	human	ensembl	74_37	-1	known	frame_shift_del	c.1050	p.E351fs	1.000	NULL	pfam_Asp-B-hydro/Triadin_dom	-	no_errors	TRDN	HGNC	ENSG00000186439				41	0	0	24	6	20
THEMIS	0	genome.wustl.edu	37	6	128135078	128135079	+	Splice_Site	INS	-	-	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	128135078	128135079	-	A	INS	THEMIS	ENST00000543064	human	ensembl	74_37	-1	known	splice_site_ins	c.710-3_710-2	e4-2	0.984:0.974	-	-	-	no_errors	THEMIS	HGNC	ENSG00000172673				103	0	0	56	17	23.2877
CTGF	0	genome.wustl.edu	37	6	132270568	132270568	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	132270568	132270568	G	-	DEL	CTGF	ENST00000367976	human	ensembl	74_37	-1	known	frame_shift_del	c.886	p.H296fs	0.997	pfam_Cys_knot,smart_Cys_knot_C,pirsf_IGFBP_CNN,pfscan_Cys_knot_C	pfam_Cys_knot,pfam_IGFBP-like,pfam_VWF_C,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_IGFBP-like,smart_VWF_C,smart_Thrombospondin_1_rpt,smart_Cys_knot_C,pirsf_IGFBP_CNN,pfscan_Cys_knot_C,pfscan_Thrombospondin_1_rpt,pfscan_VWF_C	-	no_errors	CTGF	HGNC	ENSG00000118523				216	0	0	223	17	7.08333
VNN3	0	genome.wustl.edu	37	6	133050028	133050028	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	133050028	133050028	T	-	DEL	VNN3	ENST00000207771	human	ensembl	74_37	-1	known	frame_shift_del	c.389	p.K130fs	0.998	pfam_C-N_Hydrolase,superfamily_C-N_Hydrolase,pirsf_Biotinidase_euk,pfscan_C-N_Hydrolase	pfam_C-N_Hydrolase,superfamily_C-N_Hydrolase,pirsf_Biotinidase_euk,pfscan_C-N_Hydrolase	-	no_errors	VNN3	HGNC	ENSG00000093134				144	0	0	113	11	8.87097
ECT2L	0	genome.wustl.edu	37	6	139135710	139135710	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	139135710	139135710	T	-	DEL	ECT2L	ENST00000367682	human	ensembl	74_37	+1	known	frame_shift_del	c.149	p.L52fs	0.260	NULL	pfam_DH-domain,pfam_F-box_dom,superfamily_DH-domain,superfamily_F-box_dom,smart_DH-domain,pfscan_DH-domain	-	no_errors	ECT2L	HGNC	ENSG00000203734				61	0	0	29	7	19.4444
REPS1	0	genome.wustl.edu	37	6	139266690	139266690	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	139266690	139266690	T	-	DEL	REPS1	ENST00000450536	human	ensembl	74_37	-1	known	frame_shift_del	c.422	p.K141fs	1.000	NULL	smart_EPS15_homology,pfscan_EF_hand_dom,pfscan_EPS15_homology	-	no_errors	REPS1	HGNC	ENSG00000135597				234	0	0	183	22	10.7317
HECA	0	genome.wustl.edu	37	6	139488146	139488147	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	139488146	139488147	-	G	INS	HECA	ENST00000367658	human	ensembl	74_37	+1	known	frame_shift_ins	c.997_998	p.H336fs	1.000:1.000	superfamily_Glycoside_hydrolase_SF	superfamily_Glycoside_hydrolase_SF	-	no_errors	HECA	HGNC	ENSG00000112406				82	0	0	91	9	9
PHACTR2	0	genome.wustl.edu	37	6	144081696	144081696	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	144081696	144081696	A	-	DEL	PHACTR2	ENST00000440869	human	ensembl	74_37	+1	known	frame_shift_del	c.613	p.N207fs	1.000	NULL	pfam_RPEL_repeat,smart_RPEL_repeat,pfscan_RPEL_repeat	-	no_errors	PHACTR2	HGNC	ENSG00000112419				61	0	0	41	11	21.1538
SASH1	0	genome.wustl.edu	37	6	148848703	148848703	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	148848703	148848703	A	-	DEL	SASH1	ENST00000367467	human	ensembl	74_37	+1	known	frame_shift_del	c.1399	p.K468fs	1.000	pfam_rSAM/SH3_domain-containing	pfam_rSAM/SH3_domain-containing,pfam_SAM_2,pfam_SAM_type1,pfam_SH3_2,superfamily_SAM/pointed,superfamily_SH3_domain,smart_SH3_domain,smart_SAM,pfscan_SAM	-	no_errors	SASH1	HGNC	ENSG00000111961				102	0	0	65	18	21.6867
PLEKHG1	0	genome.wustl.edu	37	6	151161071	151161071	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	151161071	151161071	C	-	DEL	PLEKHG1	ENST00000358517	human	ensembl	74_37	+1	known	frame_shift_del	c.3197	p.L1067fs	0.014	NULL	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG1	HGNC	ENSG00000120278				76	0	0	61	18	22.7848
SYNE1	0	genome.wustl.edu	37	6	152539540	152539540	+	Splice_Site	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	152539540	152539540	T	-	DEL	SYNE1	ENST00000265368	human	ensembl	74_37	-1	known	splice_site_del	c.22045-2	e119-2	0.988	-	-	-	no_errors	SYNE1	HGNC	ENSG00000131018				308	0	0	202	31	13.3047
JARID2	0	genome.wustl.edu	37	6	15496636	15496636	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	15496636	15496636	G	-	DEL	JARID2	ENST00000341776	human	ensembl	74_37	+1	known	frame_shift_del	c.1180	p.A396fs	1.000	NULL	pfam_JmjC_dom,pfam_ARID/BRIGHT_DNA-bd,pfam_TF_JmjN,pfam_Znf_C5HC2,superfamily_ARID/BRIGHT_DNA-bd,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	JARID2	HGNC	ENSG00000008083				101	0	0	79	9	10.2273
MAP3K4	0	genome.wustl.edu	37	6	161455391	161455391	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	161455391	161455391	C	-	DEL	MAP3K4	ENST00000392142	human	ensembl	74_37	+1	known	frame_shift_del	c.253	p.S87fs	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP3K4	HGNC	ENSG00000085511				72	0	0	38	9	19.1489
QKI	0	genome.wustl.edu	37	6	163899920	163899920	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	163899920	163899920	A	-	DEL	QKI	ENST00000361752	human	ensembl	74_37	+1	known	frame_shift_del	c.394	p.K134fs	1.000	smart_KH_dom	pfam_KH_dom_type_1,smart_KH_dom	-	no_errors	QKI	HGNC	ENSG00000112531				94	0	0	55	11	16.6667
NUP153	0	genome.wustl.edu	37	6	17624850	17624851	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	17624850	17624851	-	G	INS	NUP153	ENST00000537253	human	ensembl	74_37	-1	known	frame_shift_ins	c.4209_4208	p.V1404fs	0.999:1.000	NULL	pfam_Nucleoporin_Nup153,pfam_Znf_RanBP2,pfam_Retro-transposon_transp_CS,smart_Znf_RanBP2,pfscan_Znf_RanBP2	-	no_errors	NUP153	HGNC	ENSG00000124789				139	0	0	124	16	11.4286
KIAA0319	0	genome.wustl.edu	37	6	24551725	24551725	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	24551725	24551725	T	-	DEL	KIAA0319	ENST00000378214	human	ensembl	74_37	-1	known	frame_shift_del	c.2977	p.T993fs	1.000	NULL	pfam_PKD/REJ-like,superfamily_PKD_dom,smart_MANSC_N,smart_Fibronectin_type3,smart_PKD/Chitinase_dom,pfscan_MANSC,pfscan_PKD_dom	-	no_errors	KIAA0319	HGNC	ENSG00000137261				72	0	0	61	10	14.0845
TDP2	0	genome.wustl.edu	37	6	24651081	24651082	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	24651081	24651082	-	T	INS	TDP2	ENST00000545995	human	ensembl	74_37	-1	known	frame_shift_ins	c.1114_1113	p.L371fs	1.000:1.000	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,superfamily_UBA-like	-	no_errors	TDP2	HGNC	ENSG00000111802				84	0	0	60	7	10.4478
SLC17A2	0	genome.wustl.edu	37	6	25921520	25921520	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	25921520	25921520	T	-	DEL	SLC17A2	ENST00000377850	human	ensembl	74_37	-1	known	frame_shift_del	c.361	p.M121fs	0.558	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC17A2	HGNC	ENSG00000112337				102	0	0	91	8	8.08081
HIST1H1C	0	genome.wustl.edu	37	6	26056572	26056573	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	26056572	26056573	-	A	INS	HIST1H1C	ENST00000343677	human	ensembl	74_37	-1	known	frame_shift_ins	c.85_84	p.G28fs	0.004:0.000	prints_Histone_H5	pfam_Histone_H1/H5_H15,smart_Histone_H1/H5_H15,prints_Histone_H5	-	no_errors	HIST1H1C	HGNC	ENSG00000187837				85	0	0	77	7	8.33333
HIST1H1D	0	genome.wustl.edu	37	6	26234700	26234701	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	26234700	26234701	-	T	INS	HIST1H1D	ENST00000244534	human	ensembl	74_37	-1	known	frame_shift_ins	c.462_461	p.T155fs	1.000:1.000	NULL	pfam_Histone_H1/H5_H15,smart_Histone_H1/H5_H15,prints_Histone_H5	-	no_errors	HIST1H1D	HGNC	ENSG00000124575				156	0	0	130	12	8.4507
ZNF165	0	genome.wustl.edu	37	6	28056383	28056383	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	28056383	28056383	T	-	DEL	ZNF165	ENST00000377325	human	ensembl	74_37	+1	known	frame_shift_del	c.593	p.F199fs	0.135	NULL	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF165	HGNC	ENSG00000197279				190	0	0	135	9	6.25
NKAPL	0	genome.wustl.edu	37	6	28227519	28227520	+	Frame_Shift_Del	DEL	GA	GA	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	GA	GA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	28227519	28227520	GA	-	DEL	NKAPL	ENST00000343684	human	ensembl	74_37	+1	known	frame_shift_del	c.370_371	p.R127fs	0.996:1.000	NULL	pfam_DUF926	-	no_errors	NKAPL	HGNC	ENSG00000189134				149	0	0	123	25	16.8919
DHX16	0	genome.wustl.edu	37	6	30621048	30621048	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	30621048	30621048	T	-	DEL	DHX16	ENST00000376442	human	ensembl	74_37	-1	known	frame_shift_del	c.3097	p.I1033fs	0.987	NULL	pfam_DUF1605,pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX16	HGNC	ENSG00000204560				137	0	0	77	26	25.2427
C6orf25	0	genome.wustl.edu	37	6	31692600	31692601	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	31692600	31692601	-	G	INS	C6orf25	ENST00000375806	human	ensembl	74_37	+1	known	frame_shift_ins	c.600_601	p.D201fs	0.001:0.005	NULL	NULL	-	no_errors	C6orf25	HGNC	ENSG00000204420				55	0	0	65	9	12.1622
DDAH2	0	genome.wustl.edu	37	6	31696001	31696002	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	31696001	31696002	-	C	INS	DDAH2	ENST00000375787	human	ensembl	74_37	-1	known	frame_shift_ins	c.540_539	p.P181fs	0.990:1.000	pfam_Amidino_trans	pfam_Amidino_trans	-	no_errors	DDAH2	HGNC	ENSG00000213722				46	0	0	64	6	8.57143
CLIC1	0	genome.wustl.edu	37	6	31701702	31701702	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	31701702	31701702	C	-	DEL	CLIC1	ENST00000375779	human	ensembl	74_37	-1	known	frame_shift_del	c.186	p.Q63fs	0.999	superfamily_Thioredoxin-like_fold,tigrfam_Int_Cl_channel	superfamily_Glutathione-S-Trfase_C-like,superfamily_Thioredoxin-like_fold,prints_Int_Cl_channel,tigrfam_Int_Cl_channel	-	no_errors	CLIC1	HGNC	ENSG00000213719				129	0	0	143	30	17.341
TNXB	0	genome.wustl.edu	37	6	32023893	32023894	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	32023893	32023894	-	G	INS	TNXB	ENST00000375247	human	ensembl	74_37	-1	known	frame_shift_ins	c.8202_8201	p.E2735fs	0.292:0.720	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNXB	HGNC	ENSG00000168477				71	0	0	78	7	8.23529
NOTCH4	0	genome.wustl.edu	37	6	32163290	32163290	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	32163290	32163290	C	-	DEL	NOTCH4	ENST00000375023	human	ensembl	74_37	-1	known	frame_shift_del	c.5936	p.G1979fs	0.028	pirsf_Notch	pirsf_Notch,pfam_EG-like_dom,pfam_Ankyrin_rpt,pfam_EGF-like_Ca-bd_dom,pfam_Notch_dom,pfam_Notch_NODP_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_4,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom	-	no_errors	NOTCH4	HGNC	ENSG00000204301				126	0	0	96	16	14.2857
TAP1	0	genome.wustl.edu	37	6	32818896	32818896	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	32818896	32818896	G	-	DEL	TAP1	ENST00000354258	human	ensembl	74_37	-1	known	frame_shift_del	c.1055	p.T352fs	0.997	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom,tigrfam_Ag_transporter2	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC1_TM_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,prints_ABC_B2,tigrfam_Ag_transporter2	-	no_errors	TAP1	HGNC	ENSG00000168394				47	0	0	38	11	22.449
TAP1	0	genome.wustl.edu	37	6	32819902	32819903	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	32819902	32819903	-	A	INS	TAP1	ENST00000354258	human	ensembl	74_37	-1	known	frame_shift_ins	c.1008_1007	p.Q337fs	1.000:1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom,tigrfam_Ag_transporter2	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC1_TM_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,prints_ABC_B2,tigrfam_Ag_transporter2	-	no_errors	TAP1	HGNC	ENSG00000168394				81	0	0	57	11	16.1765
SLC39A7	0	genome.wustl.edu	37	6	33169042	33169042	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	33169042	33169042	C	-	DEL	SLC39A7	ENST00000374675	human	ensembl	74_37	+1	known	frame_shift_del	c.20	p.H9fs	0.998	NULL	pfam_ZIP,prints_Kininogen	-	no_errors	SLC39A7	HGNC	ENSG00000112473				159	0	0	133	27	16.875
RING1	0	genome.wustl.edu	37	6	33178989	33178990	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	33178989	33178990	-	G	INS	RING1	ENST00000374656	human	ensembl	74_37	+1	known	frame_shift_ins	c.510_511	p.E172fs	1.000:1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RING1	HGNC	ENSG00000204227				194	0	0	161	24	12.973
ZBTB9	0	genome.wustl.edu	37	6	33423997	33423997	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	33423997	33423997	G	-	DEL	ZBTB9	ENST00000395064	human	ensembl	74_37	+1	known	frame_shift_del	c.1120	p.T376fs	0.998	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB9	HGNC	ENSG00000213588				36	0	0	43	9	17.3077
DNAH8	0	genome.wustl.edu	37	6	38743641	38743641	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	38743641	38743641	A	-	DEL	DNAH8	ENST00000359357	human	ensembl	74_37	+1	known	frame_shift_del	c.1225	p.K410fs	1.000	pfam_Dynein_heavy_dom-1	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH8	HGNC	ENSG00000124721				272	0	0	217	15	6.46552
DNAH8	0	genome.wustl.edu	37	6	38825396	38825396	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	38825396	38825396	T	-	DEL	DNAH8	ENST00000359357	human	ensembl	74_37	+1	known	frame_shift_del	c.5185	p.L1730fs	1.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH8	HGNC	ENSG00000124721				103	0	0	64	15	18.9873
DNAH8	0	genome.wustl.edu	37	6	38840517	38840517	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	38840517	38840517	T	-	DEL	DNAH8	ENST00000359357	human	ensembl	74_37	+1	known	frame_shift_del	c.6545	p.S2184fs	1.000	pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH8	HGNC	ENSG00000124721				92	0	0	58	16	21.6216
KIF6	0	genome.wustl.edu	37	6	39580993	39580993	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	39580993	39580993	A	-	DEL	KIF6	ENST00000287152	human	ensembl	74_37	-1	known	frame_shift_del	c.611	p.L204fs	1.000	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF6	HGNC	ENSG00000164627				77	0	0	64	12	15.7895
ZNF318	0	genome.wustl.edu	37	6	43322917	43322918	+	Frame_Shift_Ins	INS	-	-	TGGA			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	43322917	43322918	-	TGGA	INS	ZNF318	ENST00000361428	human	ensembl	74_37	-1	known	frame_shift_ins	c.2155_2154	p.V718fs	0.000:0.001	NULL	smart_Znf_U1	-	no_errors	ZNF318	HGNC	ENSG00000171467				62	0	0	69	9	11.5385
CENPQ	0	genome.wustl.edu	37	6	49437952	49437952	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	49437952	49437952	A	-	DEL	CENPQ	ENST00000335783	human	ensembl	74_37	+1	known	frame_shift_del	c.63	p.K23fs	0.994	NULL	NULL	-	no_errors	CENPQ	HGNC	ENSG00000031691				58	0	0	37	9	19.5652
DEFB112	0	genome.wustl.edu	37	6	50016321	50016322	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	50016321	50016322	-	T	INS	DEFB112	ENST00000322246	human	ensembl	74_37	-1	known	frame_shift_ins	c.44_43	p.M15fs	0.000:0.000	NULL	NULL	-	no_errors	DEFB112	HGNC	ENSG00000180872				113	0	0	81	9	10
EFHC1	0	genome.wustl.edu	37	6	52334208	52334208	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	52334208	52334208	A	-	DEL	EFHC1	ENST00000371068	human	ensembl	74_37	+1	known	frame_shift_del	c.1215	p.D408fs	0.140	NULL	pfam_DUF1126,smart_Uncharacterised_DM10,pfscan_EF_hand_dom	-	no_errors	EFHC1	HGNC	ENSG00000096093				188	0	0	119	13	9.84848
KLHL31	0	genome.wustl.edu	37	6	53519513	53519514	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	53519513	53519514	-	T	INS	KLHL31	ENST00000370905	human	ensembl	74_37	-1	known	frame_shift_ins	c.558_557	p.N186fs	0.155:0.258	pfam_BACK,smart_BACK,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_DUF1668_ORYSA,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL31	HGNC	ENSG00000124743				92	0	0	69	11	13.75
FAM83B	0	genome.wustl.edu	37	6	54804674	54804674	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	54804674	54804674	A	-	DEL	FAM83B	ENST00000306858	human	ensembl	74_37	+1	known	frame_shift_del	c.905	p.N303fs	1.000	NULL	pfam_DUF1669	-	no_errors	FAM83B	HGNC	ENSG00000168143				107	0	0	69	19	21.5909
OGFRL1	0	genome.wustl.edu	37	6	72011643	72011643	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	72011643	72011643	A	-	DEL	OGFRL1	ENST00000370435	human	ensembl	74_37	+1	known	frame_shift_del	c.1247	p.K418fs	0.555	NULL	pfam_OGF_rcpt	-	no_errors	OGFRL1	HGNC	ENSG00000119900				143	0	0	95	28	22.7642
COL12A1	0	genome.wustl.edu	37	6	75797397	75797397	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	75797397	75797397	G	-	DEL	COL12A1	ENST00000322507	human	ensembl	74_37	-1	known	frame_shift_del	c.9077	p.P3026fs	1.000	NULL	pfam_Fibronectin_type3,pfam_VWF_A,pfam_Collagen,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL12A1	HGNC	ENSG00000111799				143	0	0	135	13	8.78378
ZNF292	0	genome.wustl.edu	37	6	87968052	87968053	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	87968052	87968053	-	T	INS	ZNF292	ENST00000369577	human	ensembl	74_37	+1	known	frame_shift_ins	c.4705_4706	p.P1571fs	0.948:0.953	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF292	HGNC	ENSG00000188994				51	0	0	43	7	14
ORC3	0	genome.wustl.edu	37	6	88318838	88318838	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	88318838	88318838	A	-	DEL	ORC3	ENST00000257789	human	ensembl	74_37	+1	known	frame_shift_del	c.604	p.R204fs	1.000	pfam_ORC3	pfam_ORC3	-	no_errors	ORC3	HGNC	ENSG00000135336				88	0	0	73	6	7.59494
ANKRD6	0	genome.wustl.edu	37	6	90338889	90338891	+	In_Frame_Del	DEL	AGA	AGA	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	90338889	90338891	AGA	-	DEL	ANKRD6	ENST00000339746	human	ensembl	74_37	+1	known	in_frame_del	c.1544_1546	p.K516in_frame_del	1.000:1.000:1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD6	HGNC	ENSG00000135299				112	0	0	100	7	6.54206
GPR63	0	genome.wustl.edu	37	6	97247161	97247161	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	6	97247161	97247161	A	-	DEL	GPR63	ENST00000229955	human	ensembl	74_37	-1	known	frame_shift_del	c.447	p.F149fs	0.997	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR63	HGNC	ENSG00000112218				90	0	0	76	20	20.8333
ZCWPW1	0	genome.wustl.edu	37	7	100002680	100002680	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	100002680	100002680	C	-	DEL	ZCWPW1	ENST00000398027	human	ensembl	74_37	-1	known	frame_shift_del	c.1207	p.V403fs	0.063	NULL	pfam_Znf_CW,pfam_PWWP_dom,smart_PWWP_dom,pfscan_PWWP_dom,pfscan_Znf_CW	-	no_errors	ZCWPW1	HGNC	ENSG00000078487				236	0	0	176	42	19.2661
MYL10	0	genome.wustl.edu	37	7	101256825	101256825	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	101256825	101256825	G	-	DEL	MYL10	ENST00000223167	human	ensembl	74_37	-1	known	frame_shift_del	c.611	p.P204fs	1.000	NULL	smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	MYL10	HGNC	ENSG00000106436				99	0	0	92	7	7.07071
C7orf50	0	genome.wustl.edu	37	7	1037311	1037311	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	1037311	1037311	G	-	DEL	C7orf50	ENST00000357429	human	ensembl	74_37	-1	known	frame_shift_del	c.535	p.L179fs	0.001	NULL	pfam_DUF2373	-	no_errors	C7orf50	HGNC	ENSG00000146540				29	0	0	31	10	24.3902
TMEM168	0	genome.wustl.edu	37	7	112424238	112424238	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	112424238	112424238	A	-	DEL	TMEM168	ENST00000312814	human	ensembl	74_37	-1	known	frame_shift_del	c.643	p.S215fs	0.968	NULL	superfamily_ConA-like_lec_gl_sf	-	no_errors	TMEM168	HGNC	ENSG00000146802				118	0	0	100	9	8.25688
MET	0	genome.wustl.edu	37	7	116403177	116403178	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	116403177	116403178	-	C	INS	MET	ENST00000318493	human	ensembl	74_37	+1	known	frame_shift_ins	c.2492_2493	p.L833fs	1.000:1.000	pirsf_Tyr_kinase_HGF/MSP_rcpt,superfamily_Ig_E-set,smart_IPT	pirsf_Tyr_kinase_HGF/MSP_rcpt,pfam_Semap_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Kinase-like_dom,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Semap_dom,pfscan_Prot_kinase_dom	-	no_errors	MET	HGNC	ENSG00000105976				117	0	0	94	7	6.93069
CTTNBP2	0	genome.wustl.edu	37	7	117450910	117450910	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	117450910	117450910	A	-	DEL	CTTNBP2	ENST00000160373	human	ensembl	74_37	-1	known	frame_shift_del	c.323	p.L108fs	1.000	pfam_Cortactin-binding_p2_N	pfam_Cortactin-binding_p2_N,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	CTTNBP2	HGNC	ENSG00000077063				225	0	0	195	11	5.33981
FAM3C	0	genome.wustl.edu	37	7	121002996	121002996	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	121002996	121002996	T	-	DEL	FAM3C	ENST00000359943	human	ensembl	74_37	-1	known	frame_shift_del	c.337	p.T113fs	1.000	NULL	NULL	-	no_errors	FAM3C	HGNC	ENSG00000196937				65	0	0	54	9	14.2857
PLXNA4	0	genome.wustl.edu	37	7	132192942	132192943	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	132192942	132192943	-	A	INS	PLXNA4	ENST00000321063	human	ensembl	74_37	-1	known	frame_shift_ins	c.511_510	p.G170fs	1.000:0.999	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA4	HGNC	ENSG00000221866				82	0	0	76	8	9.52381
SVOPL	0	genome.wustl.edu	37	7	138312995	138312996	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	138312995	138312996	-	C	INS	SVOPL	ENST00000288513	human	ensembl	74_37	-1	known	frame_shift_ins	c.521_520	p.D174fs	0.003:0.006	superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SVOPL	HGNC	ENSG00000157703				105	0	0	66	12	15.3846
JHDM1D	0	genome.wustl.edu	37	7	139833448	139833448	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	139833448	139833448	T	-	DEL	JHDM1D	ENST00000397560	human	ensembl	74_37	-1	known	frame_shift_del	c.289	p.R97fs	1.000	superfamily_Znf_FYVE_PHD	pfam_JmjC_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_JmjC_dom,pfscan_JmjC_dom,pfscan_Znf_PHD-finger	-	no_errors	JHDM1D	HGNC	ENSG00000006459				97	0	0	92	7	7.07071
DENND2A	0	genome.wustl.edu	37	7	140223197	140223197	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	140223197	140223197	G	-	DEL	DENND2A	ENST00000275884	human	ensembl	74_37	-1	known	frame_shift_del	c.2575	p.R859fs	1.000	NULL	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND2A	HGNC	ENSG00000146966				50	0	0	41	7	14.5833
DGKB	0	genome.wustl.edu	37	7	14188809	14188809	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	14188809	14188809	T	-	DEL	DGKB	ENST00000258767	human	ensembl	74_37	-1	known	frame_shift_del	c.2362	p.T788fs	0.973	NULL	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_EF_hand_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,pfscan_EF_hand_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	DGKB	HGNC	ENSG00000136267				197	0	0	136	21	13.3758
EPHB6	0	genome.wustl.edu	37	7	142561448	142561448	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	142561448	142561448	G	-	DEL	EPHB6	ENST00000392957	human	ensembl	74_37	+1	known	frame_shift_del	c.160	p.W56fs	0.984	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ephrin_rcpt_lig-bd_dom,superfamily_Galactose-bd-like,smart_Ephrin_rcpt_lig-bd_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_2,pfam_SAM_type1,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHB6	HGNC	ENSG00000106123				78	0	0	79	9	10.2273
EPHB6	0	genome.wustl.edu	37	7	142562398	142562398	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	142562398	142562398	C	-	DEL	EPHB6	ENST00000392957	human	ensembl	74_37	+1	known	frame_shift_del	c.840	p.R283fs	0.997	pirsf_Tyr_kinase_ephrin_rcpt	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_2,pfam_SAM_type1,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHB6	HGNC	ENSG00000106123				97	0	0	93	14	13.0841
REPIN1	0	genome.wustl.edu	37	7	150069797	150069797	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	150069797	150069797	C	-	DEL	REPIN1	ENST00000489432	human	ensembl	74_37	+1	known	frame_shift_del	c.1638	p.D548fs	0.226	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	REPIN1	HGNC	ENSG00000214022				61	0	0	64	5	7.24638
GIMAP7	0	genome.wustl.edu	37	7	150217889	150217889	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	150217889	150217889	T	-	DEL	GIMAP7	ENST00000313543	human	ensembl	74_37	+1	known	frame_shift_del	c.827	p.F277fs	0.002	NULL	pfam_AIG1,superfamily_P-loop_NTPase	-	no_errors	GIMAP7	HGNC	ENSG00000179144				104	0	0	48	9	15.7895
CHPF2	0	genome.wustl.edu	37	7	150935382	150935383	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	150935382	150935383	-	C	INS	CHPF2	ENST00000035307	human	ensembl	74_37	+1	known	frame_shift_ins	c.1934_1935	p.S648fs	1.000:0.983	pfam_Chond_GalNAc	pfam_Chond_GalNAc,pfam_Fringe-like	-	no_errors	CHPF2	HGNC	ENSG00000033100				43	0	0	37	9	19.5652
PRKAG2	0	genome.wustl.edu	37	7	151372597	151372597	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	151372597	151372597	G	-	DEL	PRKAG2	ENST00000287878	human	ensembl	74_37	-1	known	frame_shift_del	c.593	p.P198fs	0.997	NULL	pfam_CBS_dom,smart_CBS_dom	-	no_errors	PRKAG2	HGNC	ENSG00000106617				97	0	0	95	22	18.8034
RBM33	0	genome.wustl.edu	37	7	155556609	155556609	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	155556609	155556609	G	-	DEL	RBM33	ENST00000401878	human	ensembl	74_37	+1	known	frame_shift_del	c.3083	p.G1030fs	1.000	NULL	smart_RRM_dom	-	no_errors	RBM33	HGNC	ENSG00000184863				14	0	0	11	4	26.6667
TSPAN13	0	genome.wustl.edu	37	7	16815998	16815998	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	16815998	16815998	T	-	DEL	TSPAN13	ENST00000262067	human	ensembl	74_37	+1	known	frame_shift_del	c.226	p.Y78fs	0.999	pfam_Tetraspanin/Peripherin,prints_Tetraspanin	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	TSPAN13	HGNC	ENSG00000106537				125	0	0	75	19	20.2128
TWISTNB	0	genome.wustl.edu	37	7	19738024	19738024	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	19738024	19738024	T	-	DEL	TWISTNB	ENST00000222567	human	ensembl	74_37	-1	known	frame_shift_del	c.932	p.K311fs	1.000	NULL	pfam_RNA_pol_Rpb7_N	-	no_errors	TWISTNB	HGNC	ENSG00000105849				222	1	0.44843	182	14	7.14286
ITGB8	0	genome.wustl.edu	37	7	20441551	20441554	+	Frame_Shift_Del	DEL	AATA	AATA	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	AATA	AATA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	20441551	20441554	AATA	-	DEL	ITGB8	ENST00000222573	human	ensembl	74_37	+1	known	frame_shift_del	c.1489_1492	p.K498fs	0.013:0.000:0.000:0.000	pirsf_Integrin_bsu	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_EGF_extracell,superfamily_Plexin-like_fold,smart_Plexin-like_fold,smart_Integrin_bsu_N,prints_Integrin_bsu	-	no_errors	ITGB8	HGNC	ENSG00000105855				143	0	0	94	12	11.3208
ITGB8	0	genome.wustl.edu	37	7	20444380	20444381	+	Frame_Shift_Ins	INS	-	-	GT			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	20444380	20444381	-	GT	INS	ITGB8	ENST00000222573	human	ensembl	74_37	+1	known	frame_shift_ins	c.1817_1818	p.C610fs	0.095:0.040	pirsf_Integrin_bsu,pfam_EGF_extracell	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_EGF_extracell,superfamily_Plexin-like_fold,smart_Plexin-like_fold,smart_Integrin_bsu_N,prints_Integrin_bsu	-	no_errors	ITGB8	HGNC	ENSG00000105855				101	0	0	64	14	17.9487
FTSJ2	0	genome.wustl.edu	37	7	2275142	2275143	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	2275142	2275143	-	G	INS	FTSJ2	ENST00000242257	human	ensembl	74_37	-1	known	frame_shift_ins	c.356_355	p.L119fs	0.999:0.505	pfam_rRNA_MeTrfase_FtsJ_dom,pirsf_rRNA-MeTfrase_E	pfam_rRNA_MeTrfase_FtsJ_dom,pirsf_rRNA-MeTfrase_E	-	no_errors	FTSJ2	HGNC	ENSG00000122687				80	0	0	88	5	5.37634
KLHL7	0	genome.wustl.edu	37	7	23164753	23164754	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	23164753	23164754	-	T	INS	KLHL7	ENST00000339077	human	ensembl	74_37	+1	known	frame_shift_ins	c.404_405	p.L137fs	1.000:0.998	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL7	HGNC	ENSG00000122550				114	0	0	86	11	11.3402
OSBPL3	0	genome.wustl.edu	37	7	24892203	24892204	+	Frame_Shift_Del	DEL	TC	TC	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	TC	TC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	24892203	24892204	TC	-	DEL	OSBPL3	ENST00000313367	human	ensembl	74_37	-1	known	frame_shift_del	c.1078_1077	p.K360fs	0.999:0.999	NULL	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL3	HGNC	ENSG00000070882				81	0	0	52	6	10.3448
HOXA11	0	genome.wustl.edu	37	7	27224617	27224619	+	In_Frame_Del	DEL	GGA	GGA	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	GGA	GGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	27224617	27224619	GGA	-	DEL	HOXA11	ENST00000006015	human	ensembl	74_37	-1	known	in_frame_del	c.147_145	p.S49in_frame_del	1.000:1.000:1.000	pfam_DUF3528	pfam_DUF3528,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	HOXA11	HGNC	ENSG00000005073				142	0	0	111	16	12.5984
FKBP9	0	genome.wustl.edu	37	7	33014803	33014804	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	33014803	33014804	-	C	INS	FKBP9	ENST00000538336	human	ensembl	74_37	+1	known	frame_shift_ins	c.536_537	p.N182fs	1.000:0.998	pfam_PPIase_FKBP_dom,pfscan_PPIase_FKBP_dom	pfam_PPIase_FKBP_dom,smart_EF_hand_dom,pfscan_EF_hand_dom,pfscan_PPIase_FKBP_dom	-	no_errors	FKBP9	HGNC	ENSG00000122642				117	0	0	85	7	7.6087
POU6F2	0	genome.wustl.edu	37	7	39247047	39247047	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	39247047	39247047	C	-	DEL	POU6F2	ENST00000403058	human	ensembl	74_37	+1	known	frame_shift_del	c.339	p.P115fs	1.000	NULL	pfam_POU_specific,pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Lambda_DNA-bd_dom,smart_POU_specific,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_POU_specific,prints_POU	-	no_errors	POU6F2	HGNC	ENSG00000106536				160	0	0	175	10	5.40541
CAMK2B	0	genome.wustl.edu	37	7	44281896	44281896	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	44281896	44281896	T	-	DEL	CAMK2B	ENST00000395749	human	ensembl	74_37	-1	known	frame_shift_del	c.740	p.N247fs	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ca/CaM-dep_prot_kinase-assoc,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CAMK2B	HGNC	ENSG00000058404				90	0	0	110	14	11.2903
ZMIZ2	0	genome.wustl.edu	37	7	44796612	44796612	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	44796612	44796612	G	-	DEL	ZMIZ2	ENST00000309315	human	ensembl	74_37	+1	known	frame_shift_del	c.232	p.G79fs	0.952	NULL	pfam_Znf_MIZ,pfscan_Znf_MIZ	-	no_errors	ZMIZ2	HGNC	ENSG00000122515				92	0	0	89	11	11
CCM2	0	genome.wustl.edu	37	7	45108060	45108060	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	45108060	45108060	C	-	DEL	CCM2	ENST00000381112	human	ensembl	74_37	+1	known	frame_shift_del	c.554	p.S187fs	1.000	pfscan_PTB/PI_dom	pfscan_PTB/PI_dom	-	no_errors	CCM2	HGNC	ENSG00000136280				76	0	0	84	7	7.69231
ABCA13	0	genome.wustl.edu	37	7	48287869	48287869	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	48287869	48287869	A	-	DEL	ABCA13	ENST00000435803	human	ensembl	74_37	+1	known	frame_shift_del	c.1693	p.N566fs	0.001	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA13	HGNC	ENSG00000179869				80	0	0	64	10	13.5135
ABCA13	0	genome.wustl.edu	37	7	48314550	48314550	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	48314550	48314550	A	-	DEL	ABCA13	ENST00000435803	human	ensembl	74_37	+1	known	frame_shift_del	c.5287	p.N1764fs	0.073	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA13	HGNC	ENSG00000179869				94	0	0	51	18	26.087
DDC	0	genome.wustl.edu	37	7	50531075	50531075	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	50531075	50531075	T	-	DEL	DDC	ENST00000357936	human	ensembl	74_37	-1	known	frame_shift_del	c.1297	p.I433fs	1.000	superfamily_PyrdxlP-dep_Trfase	pfam_PyrdxlP-dep_de-COase,pfam_ArAA_b-elim_lyase/Thr_aldolase,superfamily_PyrdxlP-dep_Trfase,prints_Aromatic_deC	-	no_errors	DDC	HGNC	ENSG00000132437				101	0	0	57	12	17.3913
SUMF2	0	genome.wustl.edu	37	7	56147328	56147328	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	56147328	56147328	A	-	DEL	SUMF2	ENST00000342190	human	ensembl	74_37	+1	known	frame_shift_del	c.841	p.S282fs	0.000	NULL	pfam_FGE_dom,superfamily_C-type_lectin_fold	-	no_errors	SUMF2	HGNC	ENSG00000129103				73	0	0	66	12	15.3846
CCL24	0	genome.wustl.edu	37	7	75441243	75441243	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	75441243	75441243	G	-	DEL	CCL24	ENST00000222902	human	ensembl	74_37	-1	known	frame_shift_del	c.231	p.K78fs	0.066	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom	-	no_errors	CCL24	HGNC	ENSG00000106178				71	0	0	74	7	8.64198
CACNA2D1	0	genome.wustl.edu	37	7	81667483	81667483	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	81667483	81667483	T	-	DEL	CACNA2D1	ENST00000356253	human	ensembl	74_37	-1	known	frame_shift_del	c.948	p.V317fs	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VDCC_a2/dsu,pfam_VWA_N,pfam_Cache_domain,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	CACNA2D1	HGNC	ENSG00000153956				193	0	0	108	26	19.403
ICA1	0	genome.wustl.edu	37	7	8198251	8198251	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	8198251	8198251	T	-	DEL	ICA1	ENST00000422063	human	ensembl	74_37	-1	known	frame_shift_del	c.611	p.N204fs	1.000	pfam_AH_dom,pfscan_AH_dom	pfam_AH_dom,pfam_Islet_autoAg_Ica1_C,pfscan_AH_dom	-	no_errors	ICA1	HGNC	ENSG00000003147				86	0	0	55	19	25.6757
CROT	0	genome.wustl.edu	37	7	87022127	87022127	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	87022127	87022127	T	-	DEL	CROT	ENST00000331536	human	ensembl	74_37	+1	known	frame_shift_del	c.1586	p.S531fs	0.999	pfam_Carn_acyl_trans	pfam_Carn_acyl_trans	-	no_errors	CROT	HGNC	ENSG00000005469				114	0	0	77	5	6.09756
RUNDC3B	0	genome.wustl.edu	37	7	87258157	87258157	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	87258157	87258157	G	-	DEL	RUNDC3B	ENST00000338056	human	ensembl	74_37	+1	known	frame_shift_del	c.18	p.G8fs	1.000	NULL	pfam_Run,smart_Run,pfscan_Run	-	no_errors	RUNDC3B	HGNC	ENSG00000105784				10	0	0	5	4	44.4444
ADAM22	0	genome.wustl.edu	37	7	87759706	87759706	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	87759706	87759706	A	-	DEL	ADAM22	ENST00000265727	human	ensembl	74_37	+1	known	frame_shift_del	c.757	p.K254fs	1.000	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM22	HGNC	ENSG00000008277				94	0	0	65	14	17.7215
CYP51A1	0	genome.wustl.edu	37	7	91752494	91752494	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	91752494	91752494	T	-	DEL	CYP51A1	ENST00000003100	human	ensembl	74_37	-1	known	frame_shift_del	c.1026	p.K342fs	1.000	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_B	-	no_errors	CYP51A1	HGNC	ENSG00000001630				227	2	0.873362	164	14	7.86517
ANKIB1	0	genome.wustl.edu	37	7	91936914	91936914	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	91936914	91936914	A	-	DEL	ANKIB1	ENST00000265742	human	ensembl	74_37	+1	known	frame_shift_del	c.430	p.N146fs	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Znf_C6HC,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Znf_RING,smart_Znf_C6HC,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Ubiquitin-int_motif,pfscan_Znf_RING	-	no_errors	ANKIB1	HGNC	ENSG00000001629				60	0	0	39	8	17.0213
DLX5	0	genome.wustl.edu	37	7	96653778	96653778	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	96653778	96653778	C	-	DEL	DLX5	ENST00000222598	human	ensembl	74_37	-1	known	frame_shift_del	c.158	p.G53fs	1.000	pfam_Distal-less_N	pfam_Distal-less_N,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_HTH_motif,prints_Homeobox_metazoa	-	no_errors	DLX5	HGNC	ENSG00000105880				97	0	0	83	17	17
ARPC1A	0	genome.wustl.edu	37	7	98946494	98946494	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	98946494	98946494	A	-	DEL	ARPC1A	ENST00000262942	human	ensembl	74_37	+1	known	frame_shift_del	c.412	p.K139fs	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_ARPC2/3_su1	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_ARPC2/3_su1,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	ARPC1A	HGNC	ENSG00000241685				117	0	0	100	9	8.25688
ZKSCAN5	0	genome.wustl.edu	37	7	99103706	99103706	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	99103706	99103706	C	-	DEL	ZKSCAN5	ENST00000326775	human	ensembl	74_37	+1	known	frame_shift_del	c.39	p.P15fs	0.980	NULL	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZKSCAN5	HGNC	ENSG00000196652				118	0	0	94	23	19.6581
ZKSCAN5	0	genome.wustl.edu	37	7	99124010	99124010	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	7	99124010	99124010	A	-	DEL	ZKSCAN5	ENST00000326775	human	ensembl	74_37	+1	known	frame_shift_del	c.1347	p.K450fs	0.997	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZKSCAN5	HGNC	ENSG00000196652				324	0	0	266	16	5.67376
VPS13B	0	genome.wustl.edu	37	8	100654346	100654346	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	100654346	100654346	A	-	DEL	VPS13B	ENST00000358544	human	ensembl	74_37	+1	known	frame_shift_del	c.5603	p.T1870fs	1.000	NULL	pfam_Autophagy-rel_C	-	no_errors	VPS13B	HGNC	ENSG00000132549				99	0	0	124	10	7.46269
RGS22	0	genome.wustl.edu	37	8	101092539	101092539	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	101092539	101092539	A	-	DEL	RGS22	ENST00000360863	human	ensembl	74_37	-1	known	frame_shift_del	c.162	p.F54fs	1.000	NULL	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam	-	no_errors	RGS22	HGNC	ENSG00000132554				54	0	0	65	8	10.9589
FBXO43	0	genome.wustl.edu	37	8	101153474	101153474	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	101153474	101153474	A	-	DEL	FBXO43	ENST00000428847	human	ensembl	74_37	-1	known	frame_shift_del	c.1008	p.F336fs	0.999	NULL	pfam_Znf_C6HC,superfamily_F-box_dom,smart_Znf_C6HC	-	no_errors	FBXO43	HGNC	ENSG00000156509				136	0	0	180	10	5.26316
UBR5	0	genome.wustl.edu	37	8	103372393	103372393	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	103372393	103372393	C	-	DEL	UBR5	ENST00000520539	human	ensembl	74_37	-1	known	frame_shift_del	c.292	p.A98fs	1.000	NULL	pfam_HECT,pfam_E3_UbLigase_EDD_UBA,pfam_PABP_HYD,pfam_Znf_N-recognin,superfamily_HECT,superfamily_PABP_HYD,superfamily_RCC1/BLIP-II,smart_Znf_N-recognin_met,smart_PABP_HYD,smart_HECT,pfscan_HECT,pfscan_Znf_N-recognin	-	no_errors	UBR5	HGNC	ENSG00000104517				89	0	0	108	14	11.4754
XKR6	0	genome.wustl.edu	37	8	10755816	10755816	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	10755816	10755816	G	-	DEL	XKR6	ENST00000416569	human	ensembl	74_37	-1	known	frame_shift_del	c.1572	p.D525fs	0.999	NULL	pfam_Transport_prot_XK	-	no_errors	XKR6	HGNC	ENSG00000171044				54	0	0	78	9	10.3448
ANGPT1	0	genome.wustl.edu	37	8	108509628	108509629	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	108509628	108509629	-	T	INS	ANGPT1	ENST00000517746	human	ensembl	74_37	-1	known	frame_shift_ins	c.159_158	p.N53fs	1.000:1.000	NULL	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	-	no_errors	ANGPT1	HGNC	ENSG00000154188				111	0	0	151	9	5.625
SYBU	0	genome.wustl.edu	37	8	110588011	110588012	+	Frame_Shift_Del	DEL	GA	GA	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	GA	GA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	110588011	110588012	GA	-	DEL	SYBU	ENST00000276646	human	ensembl	74_37	-1	known	frame_shift_del	c.1116_1115	p.L372fs	0.945:1.000	NULL	NULL	-	no_errors	SYBU	HGNC	ENSG00000147642				76	0	0	107	7	6.14035
FAM167A	0	genome.wustl.edu	37	8	11301908	11301908	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	11301908	11301908	G	-	DEL	FAM167A	ENST00000284486	human	ensembl	74_37	-1	known	frame_shift_del	c.13	p.Q5fs	0.953	NULL	pfam_FAM167	-	no_errors	FAM167A	HGNC	ENSG00000154319				129	0	0	210	12	5.40541
TAF2	0	genome.wustl.edu	37	8	120818621	120818622	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	120818621	120818622	-	A	INS	TAF2	ENST00000378164	human	ensembl	74_37	-1	known	frame_shift_ins	c.320_319	p.S107fs	1.000:1.000	pfam_Peptidase_M1_N	pfam_Peptidase_M1_N,superfamily_ARM-type_fold	-	no_errors	TAF2	HGNC	ENSG00000064313				131	0	0	153	13	7.83133
MTBP	0	genome.wustl.edu	37	8	121468887	121468887	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	121468887	121468887	A	-	DEL	MTBP	ENST00000305949	human	ensembl	74_37	+1	known	frame_shift_del	c.724	p.I243fs	1.000	NULL	NULL	-	no_errors	MTBP	HGNC	ENSG00000172167				315	0	0	409	27	6.19266
FER1L6	0	genome.wustl.edu	37	8	124998349	124998350	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	124998349	124998350	-	T	INS	FER1L6	ENST00000399018	human	ensembl	74_37	+1	known	frame_shift_ins	c.1452_1453	p.E486fs	0.999:1.000	NULL	pfam_C2_dom,pfam_Ferlin_B-domain,pfam_FerIin-domain,superfamily_C2_dom,superfamily_ABC1_TM_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	FER1L6	HGNC	ENSG00000214814				122	0	0	128	12	8.57143
ZNF572	0	genome.wustl.edu	37	8	125990037	125990038	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	125990037	125990038	-	A	INS	ZNF572	ENST00000319286	human	ensembl	74_37	+1	known	frame_shift_ins	c.1527_1528	p.N510fs	0.063:0.105	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF572	HGNC	ENSG00000180938				110	0	0	149	13	8.02469
KCNQ3	0	genome.wustl.edu	37	8	133141799	133141799	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	133141799	133141799	G	-	DEL	KCNQ3	ENST00000388996	human	ensembl	74_37	-1	known	frame_shift_del	c.2329	p.R777fs	0.017	pfam_Ankyrin-G_BS	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ankyrin-G_BS,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl_volt-dep_KCNQ3,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ3	HGNC	ENSG00000184156				57	0	0	79	5	5.95238
KCNQ3	0	genome.wustl.edu	37	8	133150233	133150233	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	133150233	133150233	T	-	DEL	KCNQ3	ENST00000388996	human	ensembl	74_37	-1	known	frame_shift_del	c.1599	p.K533fs	0.715	pfam_K_chnl_volt-dep_KCNQ_C	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ankyrin-G_BS,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl_volt-dep_KCNQ3,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ3	HGNC	ENSG00000184156				161	0	0	162	18	10
WISP1	0	genome.wustl.edu	37	8	134232957	134232957	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	134232957	134232957	C	-	DEL	WISP1	ENST00000250160	human	ensembl	74_37	+1	known	frame_shift_del	c.483	p.P163fs	0.918	pfam_VWF_C,smart_VWF_C,pirsf_IGFBP_CNN,pfscan_VWF_C	pfam_IGFBP-like,pfam_VWF_C,pfam_Cys_knot,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_IGFBP-like,smart_VWF_C,smart_Thrombospondin_1_rpt,smart_Cys_knot_C,pirsf_IGFBP_CNN,pfscan_Cys_knot_C,pfscan_Thrombospondin_1_rpt,pfscan_VWF_C	-	no_errors	WISP1	HGNC	ENSG00000104415				64	0	0	105	12	10.2564
ZFAT	0	genome.wustl.edu	37	8	135669826	135669826	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	135669826	135669826	G	-	DEL	ZFAT	ENST00000377838	human	ensembl	74_37	-1	known	frame_shift_del	c.174	p.N59fs	0.930	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFAT	HGNC	ENSG00000066827				55	0	0	85	9	9.57447
COL22A1	0	genome.wustl.edu	37	8	139611097	139611097	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	139611097	139611097	T	-	DEL	COL22A1	ENST00000303045	human	ensembl	74_37	-1	known	frame_shift_del	c.4230	p.G1411fs	1.000	pfam_Collagen	pfam_Collagen,pfam_VWF_A,superfamily_ConA-like_lec_gl_sf,smart_VWF_A,smart_Laminin_G,pfscan_VWF_A	-	no_errors	COL22A1	HGNC	ENSG00000169436				49	0	0	86	7	7.52688
AGO2	0	genome.wustl.edu	37	8	141561430	141561430	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	141561430	141561430	G	-	DEL	AGO2	ENST00000220592	human	ensembl	74_37	-1	known	frame_shift_del	c.1375	p.Q459fs	1.000	NULL	pfam_Piwi,pfam_PAZ_dom,pfam_DUF1785,superfamily_RNaseH-like_dom,superfamily_PAZ_dom,smart_PAZ_dom,smart_Piwi,pfscan_PAZ_dom,pfscan_Piwi	-	no_errors	AGO2	HGNC	ENSG00000123908				83	0	0	123	8	6.10687
CCAR2	0	genome.wustl.edu	37	8	22472975	22472975	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	22472975	22472975	C	-	DEL	CCAR2	ENST00000308511	human	ensembl	74_37	+1	known	frame_shift_del	c.1243	p.R417fs	1.000	NULL	superfamily_NA-bd_OB-fold	-	no_errors	CCAR2	HGNC	ENSG00000158941				153	0	0	217	36	14.2292
RHOBTB2	0	genome.wustl.edu	37	8	22864673	22864673	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	22864673	22864673	G	-	DEL	RHOBTB2	ENST00000251822	human	ensembl	74_37	+1	known	frame_shift_del	c.915	p.G307fs	1.000	superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_BTB_POZ,pfam_Small_GTPase,pfam_MIRO-like,superfamily_P-loop_NTPase,superfamily_BTB/POZ_fold,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_BTB/POZ-like,pfscan_BTB/POZ-like,prints_Small_GTPase	-	no_errors	RHOBTB2	HGNC	ENSG00000008853				82	0	0	96	22	18.6441
EBF2	0	genome.wustl.edu	37	8	25718689	25718689	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	25718689	25718689	G	-	DEL	EBF2	ENST00000520164	human	ensembl	74_37	-1	known	frame_shift_del	c.1218	p.R407fs	0.994	NULL	pfam_IPT,superfamily_Ig_E-set,smart_IPT	-	no_errors	EBF2	HGNC	ENSG00000221818				126	0	0	172	11	6.01093
ADRA1A	0	genome.wustl.edu	37	8	26722383	26722383	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	26722383	26722383	C	-	DEL	ADRA1A	ENST00000380586	human	ensembl	74_37	-1	known	frame_shift_del	c.104	p.G35fs	0.919	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_ADRA1A_rcpt,prints_GPCR_Rhodpsn,prints_ADR_fam	-	no_errors	ADRA1A	HGNC	ENSG00000120907				225	0	0	261	48	15.534
NUGGC	0	genome.wustl.edu	37	8	27891059	27891059	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	27891059	27891059	A	-	DEL	NUGGC	ENST00000341513	human	ensembl	74_37	-1	known	frame_shift_del	c.1767	p.F589fs	1.000	NULL	pfam_Dynamin_GTPase,superfamily_P-loop_NTPase	-	no_errors	NUGGC	HGNC	ENSG00000189233				74	0	0	77	9	10.4651
DCTN6	0	genome.wustl.edu	37	8	30036948	30036950	+	In_Frame_Del	DEL	ATA	ATA	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	ATA	ATA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	30036948	30036950	ATA	-	DEL	DCTN6	ENST00000221114	human	ensembl	74_37	+1	known	in_frame_del	c.308_310	p.N105in_frame_del	1.000:1.000:1.000	superfamily_Trimer_LpxA-like	superfamily_Trimer_LpxA-like	-	no_errors	DCTN6	HGNC	ENSG00000104671				62	0	0	52	7	11.8644
TEX15	0	genome.wustl.edu	37	8	30701013	30701013	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	30701013	30701013	C	-	DEL	TEX15	ENST00000256246	human	ensembl	74_37	-1	known	frame_shift_del	c.5521	p.D1841fs	0.000	NULL	NULL	-	no_errors	TEX15	HGNC	ENSG00000133863				150	0	0	159	10	5.91716
TEX15	0	genome.wustl.edu	37	8	30701516	30701516	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	30701516	30701516	T	-	DEL	TEX15	ENST00000256246	human	ensembl	74_37	-1	known	frame_shift_del	c.5018	p.N1673fs	0.817	NULL	NULL	-	no_errors	TEX15	HGNC	ENSG00000133863				160	0	0	147	18	10.9091
TEX15	0	genome.wustl.edu	37	8	30703516	30703516	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	30703516	30703516	T	-	DEL	TEX15	ENST00000256246	human	ensembl	74_37	-1	known	frame_shift_del	c.3018	p.A1007fs	1.000	NULL	NULL	-	no_errors	TEX15	HGNC	ENSG00000133863				288	1	0.346021	296	32	9.7561
NRG1	0	genome.wustl.edu	37	8	32453511	32453511	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	32453511	32453511	A	-	DEL	NRG1	ENST00000338921	human	ensembl	74_37	+1	known	frame_shift_del	c.266	p.K91fs	0.998	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Neuregulin_1_C,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Ig-like_dom,prints_Neuregulin	-	no_errors	NRG1	HGNC	ENSG00000157168				111	1	0.892857	112	16	12.5
BAG4	0	genome.wustl.edu	37	8	38067994	38067995	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	38067994	38067995	-	A	INS	BAG4	ENST00000287322	human	ensembl	74_37	+1	known	frame_shift_ins	c.1357_1358	p.G456fs	1.000:1.000	smart_BAG_domain,pfscan_BAG_domain	pfam_BAG_domain,smart_BAG_domain,pfscan_BAG_domain	-	no_errors	BAG4	HGNC	ENSG00000156735				96	0	0	67	7	9.45946
AP3M2	0	genome.wustl.edu	37	8	42024863	42024864	+	Frame_Shift_Del	DEL	AC	AC	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	AC	AC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	42024863	42024864	AC	-	DEL	AP3M2	ENST00000174653	human	ensembl	74_37	+1	known	frame_shift_del	c.985_986	p.T331fs	0.336:0.350	pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C,pirsf_Clathrin_mu,pfscan_Clathrin_mu_C	pfam_Clathrin_mu_C,pfam_AP_mu_sigma_su,superfamily_Clathrin_mu_C,superfamily_Longin-like_dom,pirsf_Clathrin_mu,pfscan_Clathrin_mu_C,prints_Clathrin_mu	-	no_errors	AP3M2	HGNC	ENSG00000070718				72	0	0	83	13	13.5417
HOOK3	0	genome.wustl.edu	37	8	42857261	42857261	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	42857261	42857261	A	-	DEL	HOOK3	ENST00000307602	human	ensembl	74_37	+1	known	frame_shift_del	c.1632	p.K546fs	0.988	pfam_Hook-related_fam,superfamily_t-SNARE	pfam_Hook-related_fam,superfamily_t-SNARE	-	no_errors	HOOK3	HGNC	ENSG00000168172				148	0	0	123	16	11.5108
PRKDC	0	genome.wustl.edu	37	8	48866910	48866910	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	48866910	48866910	T	-	DEL	PRKDC	ENST00000314191	human	ensembl	74_37	-1	known	frame_shift_del	c.496	p.I166fs	0.999	superfamily_ARM-type_fold	pfam_NUC194,pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PRKDC	HGNC	ENSG00000253729				9	0	0	12	6	33.3333
ERICH1	0	genome.wustl.edu	37	8	623321	623321	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	623321	623321	A	-	DEL	ERICH1	ENST00000262109	human	ensembl	74_37	-1	known	frame_shift_del	c.1031	p.L344fs	0.731	NULL	NULL	-	no_errors	ERICH1	HGNC	ENSG00000104714				160	0	0	185	13	6.56566
MCPH1	0	genome.wustl.edu	37	8	6302639	6302639	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	6302639	6302639	A	-	DEL	MCPH1	ENST00000344683	human	ensembl	74_37	+1	known	frame_shift_del	c.1396	p.T468fs	0.010	pfam_Microcephalin	pfam_Microcephalin,pfam_BRCT_dom,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom,prints_BRCA1	-	no_errors	MCPH1	HGNC	ENSG00000147316				104	0	0	108	29	21.1679
ANGPT2	0	genome.wustl.edu	37	8	6378798	6378798	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	6378798	6378798	T	-	DEL	ANGPT2	ENST00000325203	human	ensembl	74_37	-1	known	frame_shift_del	c.700	p.I234fs	0.004	NULL	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	-	no_errors	ANGPT2	HGNC	ENSG00000091879				135	0	0	129	32	19.8758
ARFGEF1	0	genome.wustl.edu	37	8	68184005	68184006	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	68184005	68184006	-	A	INS	ARFGEF1	ENST00000262215	human	ensembl	74_37	-1	known	frame_shift_ins	c.1504_1503	p.E501fs	1.000:1.000	superfamily_ARM-type_fold	pfam_Sec7_dom,pfam_DUF1981_Sec7_assoc,superfamily_Sec7_dom,superfamily_ARM-type_fold,smart_Sec7_dom,pfscan_Sec7_dom	-	no_errors	ARFGEF1	HGNC	ENSG00000066777				81	0	0	67	6	8.21918
ZFHX4	0	genome.wustl.edu	37	8	77767171	77767171	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	77767171	77767171	C	-	DEL	ZFHX4	ENST00000521891	human	ensembl	74_37	+1	known	frame_shift_del	c.8014	p.Q2672fs	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656				127	0	0	171	12	6.55738
FAM86B3P	0	genome.wustl.edu	37	8	8098084	8098084	+	RNA	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	8098084	8098084	A	-	DEL	FAM86B3P	ENST00000310542	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	FAM86B3P	HGNC	ENSG00000173295				10	0	0	14	5	26.3158
ZBTB10	0	genome.wustl.edu	37	8	81412243	81412243	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	81412243	81412243	A	-	DEL	ZBTB10	ENST00000430430	human	ensembl	74_37	+1	known	frame_shift_del	c.1487	p.I498fs	0.999	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB10	HGNC	ENSG00000205189				248	0	0	267	23	7.93103
TMEM64	0	genome.wustl.edu	37	8	91643787	91643788	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	91643787	91643788	-	A	INS	TMEM64	ENST00000458549	human	ensembl	74_37	-1	known	frame_shift_ins	c.944_943	p.C315fs	1.000:1.000	NULL	pfam_SNARE_assoc	-	no_errors	TMEM64	HGNC	ENSG00000180694				113	0	0	131	10	7.0922
GEM	0	genome.wustl.edu	37	8	95262598	95262599	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	95262598	95262599	-	T	INS	GEM	ENST00000297596	human	ensembl	74_37	-1	known	frame_shift_ins	c.831_830	p.N277fs	0.998:1.000	pirsf_Small_GTPase_GEM/REM/Rad	pfam_Small_GTPase,pfam_MIRO-like,pfam_Fe2_transport_prot_B_N,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,pirsf_Small_GTPase_GEM/REM/Rad,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	GEM	HGNC	ENSG00000164949				88	0	0	114	11	8.8
ESRP1	0	genome.wustl.edu	37	8	95686611	95686611	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	8	95686611	95686611	A	-	DEL	ESRP1	ENST00000433389	human	ensembl	74_37	+1	known	frame_shift_del	c.1528	p.N512fs	1.000	smart_RRM_dom	superfamily_RNaseH-like_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	ESRP1	HGNC	ENSG00000104413				99	0	0	95	58	37.9085
GABBR2	0	genome.wustl.edu	37	9	101235552	101235552	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	101235552	101235552	T	-	DEL	GABBR2	ENST00000259455	human	ensembl	74_37	-1	known	frame_shift_del	c.875	p.Q292fs	1.000	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,prints_GPCR_3_GABA_rcpt_B2	pfam_GPCR_3_C,pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,prints_GPCR_3_GABA_rcpt_B2,prints_GPCR_3_GABA_rcpt_B,prints_GPCR_3_GABA_rcpt_B1,prints_GPCR_3,pfscan_GPCR_3_C	-	no_errors	GABBR2	HGNC	ENSG00000136928				61	0	0	64	6	8.57143
ALG2	0	genome.wustl.edu	37	9	101980276	101980276	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	101980276	101980276	T	-	DEL	ALG2	ENST00000476832	human	ensembl	74_37	-1	known	frame_shift_del	c.1191	p.K397fs	0.960	NULL	pfam_Glyco_trans_1	-	no_errors	ALG2	HGNC	ENSG00000119523				116	0	0	92	21	18.5841
STX17	0	genome.wustl.edu	37	9	102730007	102730007	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	102730007	102730007	A	-	DEL	STX17	ENST00000259400	human	ensembl	74_37	+1	known	frame_shift_del	c.655	p.N220fs	1.000	pfam_T_SNARE_dom,smart_T_SNARE_dom,pfscan_T_SNARE_dom	pfam_T_SNARE_dom,superfamily_t-SNARE,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	STX17	HGNC	ENSG00000136874				102	0	0	86	11	11.3402
TEX10	0	genome.wustl.edu	37	9	103102604	103102604	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	103102604	103102604	A	-	DEL	TEX10	ENST00000374902	human	ensembl	74_37	-1	known	frame_shift_del	c.1185	p.F395fs	1.000	superfamily_ARM-type_fold	pfam_IPI1/TEX10,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	TEX10	HGNC	ENSG00000136891				322	0	0	192	32	14.2857
ZNF462	0	genome.wustl.edu	37	9	109689705	109689705	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	109689705	109689705	C	-	DEL	ZNF462	ENST00000457913	human	ensembl	74_37	+1	known	frame_shift_del	c.3512	p.I1173fs	0.861	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF462	HGNC	ENSG00000148143				176	0	0	150	14	8.53659
UGCG	0	genome.wustl.edu	37	9	114695180	114695180	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	114695180	114695180	T	-	DEL	UGCG	ENST00000374279	human	ensembl	74_37	+1	known	frame_shift_del	c.1088	p.L365fs	1.000	NULL	pfam_Glyco_trans_2	-	no_errors	UGCG	HGNC	ENSG00000148154				126	0	0	112	29	20.5674
TNC	0	genome.wustl.edu	37	9	117819512	117819512	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	117819512	117819512	G	-	DEL	TNC	ENST00000350763	human	ensembl	74_37	-1	known	frame_shift_del	c.4499	p.P1500fs	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNC	HGNC	ENSG00000041982				155	0	0	137	8	5.51724
PAPPA	0	genome.wustl.edu	37	9	119065092	119065093	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	119065092	119065093	-	A	INS	PAPPA	ENST00000328252	human	ensembl	74_37	+1	known	frame_shift_ins	c.3010_3011	p.T1006fs	1.000:1.000	NULL	pfam_Sushi_SCR_CCP,pfam_Notch_dom,pfam_Peptidase_M43,superfamily_ConA-like_lec_gl_sf,superfamily_Sushi_SCR_CCP,superfamily_Fibronectin_type3,superfamily_Notch_dom,smart_LamG-like,smart_Notch_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,tigrfam_Myxo_disulph_rpt	-	no_errors	PAPPA	HGNC	ENSG00000182752				99	0	0	72	26	26.5306
ODF2	0	genome.wustl.edu	37	9	131261330	131261331	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	131261330	131261331	-	A	INS	ODF2	ENST00000434106	human	ensembl	74_37	+1	known	frame_shift_ins	c.2226_2227	p.I743fs	1.000:1.000	NULL	NULL	-	no_errors	ODF2	HGNC	ENSG00000136811				112	0	0	118	8	6.34921
C9orf114	0	genome.wustl.edu	37	9	131591120	131591120	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	131591120	131591120	T	-	DEL	C9orf114	ENST00000361256	human	ensembl	74_37	-1	known	frame_shift_del	c.102	p.K34fs	0.998	NULL	pfam_Put_MeTrfase,superfamily_NA-bd_OB-fold	-	no_errors	C9orf114	HGNC	ENSG00000198917				142	0	0	100	38	27.5362
NUP214	0	genome.wustl.edu	37	9	134090704	134090704	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	134090704	134090704	A	-	DEL	NUP214	ENST00000451030	human	ensembl	74_37	+1	known	frame_shift_del	c.5701	p.N1902fs	1.000	NULL	smart_WD40_repeat	-	no_errors	NUP214	HGNC	ENSG00000126883				97	0	0	97	7	6.73077
SETX	0	genome.wustl.edu	37	9	135202582	135202582	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	135202582	135202582	C	-	DEL	SETX	ENST00000372169	human	ensembl	74_37	-1	known	frame_shift_del	c.4403	p.G1468fs	0.357	NULL	superfamily_P-loop_NTPase	-	no_errors	SETX	HGNC	ENSG00000107290				169	0	0	130	30	18.75
TTF1	0	genome.wustl.edu	37	9	135277202	135277202	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	135277202	135277202	T	-	DEL	TTF1	ENST00000334270	human	ensembl	74_37	-1	known	frame_shift_del	c.1007	p.K336fs	0.912	NULL	superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	TTF1	HGNC	ENSG00000125482				127	0	0	101	9	8.18182
BRD3	0	genome.wustl.edu	37	9	136917543	136917543	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	136917543	136917543	T	-	DEL	BRD3	ENST00000303407	human	ensembl	74_37	-1	known	frame_shift_del	c.236	p.N79fs	1.000	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	BRD3	HGNC	ENSG00000169925				112	0	0	75	24	24.2424
COL5A1	0	genome.wustl.edu	37	9	137676927	137676928	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	137676927	137676928	-	C	INS	COL5A1	ENST00000371817	human	ensembl	74_37	+1	known	frame_shift_ins	c.2577_2578	p.G861fs	0.924:0.984	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL5A1	HGNC	ENSG00000130635				43	0	0	36	6	14.2857
PPP1R26	0	genome.wustl.edu	37	9	138379043	138379043	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	138379043	138379043	G	-	DEL	PPP1R26	ENST00000356818	human	ensembl	74_37	+1	known	frame_shift_del	c.2687	p.V898fs	0.002	NULL	NULL	-	no_errors	PPP1R26	HGNC	ENSG00000196422				73	0	0	52	20	27.7778
FAM69B	0	genome.wustl.edu	37	9	139616665	139616665	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	139616665	139616665	C	-	DEL	FAM69B	ENST00000371692	human	ensembl	74_37	+1	known	frame_shift_del	c.395	p.R134fs	0.215	NULL	pfam_FAM69_kinase_dom	-	no_errors	FAM69B	HGNC	ENSG00000165716				54	0	0	36	9	20
NDOR1	0	genome.wustl.edu	37	9	140100743	140100743	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	140100743	140100743	C	-	DEL	NDOR1	ENST00000371521	human	ensembl	74_37	+1	known	frame_shift_del	c.195	p.P67fs	1.000	pfam_Flavodoxin/NO_synth,pfscan_Flavodoxin/NO_synth	pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,superfamily_Riboflavin_synthase-like_b-brl,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	NDOR1	HGNC	ENSG00000188566				288	0	0	226	21	8.50202
TUBB4B	0	genome.wustl.edu	37	9	140137541	140137543	+	In_Frame_Del	DEL	CAG	CAG	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	CAG	CAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	140137541	140137543	CAG	-	DEL	TUBB4B	ENST00000340384	human	ensembl	74_37	+1	known	in_frame_del	c.871_873	p.Q292in_frame_del	1.000:1.000:1.000	pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tub_FtsZ_C,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Gamma_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,pfam_Misato_II_tubulin-like,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Gamma_tubulin,prints_Delta_tubulin,prints_Alpha_tubulin	-	no_errors	TUBB4B	HGNC	ENSG00000188229				67	0	0	66	15	18.5185
ADAMTSL1	0	genome.wustl.edu	37	9	18680350	18680350	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	18680350	18680350	G	-	DEL	ADAMTSL1	ENST00000327883	human	ensembl	74_37	+1	known	frame_shift_del	c.1177	p.G395fs	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,pfam_ADAM_spacer1,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_Thrombospondin_1_rpt	-	no_errors	ADAMTSL1	HGNC	ENSG00000178031				43	0	0	44	8	15.3846
HAUS6	0	genome.wustl.edu	37	9	19063047	19063047	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	19063047	19063047	T	-	DEL	HAUS6	ENST00000380502	human	ensembl	74_37	-1	known	frame_shift_del	c.1588	p.S530fs	0.006	NULL	NULL	-	no_errors	HAUS6	HGNC	ENSG00000147874				200	0	0	134	25	15.7233
DENND4C	0	genome.wustl.edu	37	9	19296164	19296164	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	19296164	19296164	T	-	DEL	DENND4C	ENST00000602925	human	ensembl	74_37	+1	known	frame_shift_del	c.960	p.F322fs	0.998	pfam_DENN_dom,smart_DENN_dom,pfscan_DENN_dom	pfam_DENN_dom,pfam_dDENN_dom,pfam_uDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND4C	HGNC	ENSG00000137145				194	0	0	129	32	19.8758
PTPLAD2	0	genome.wustl.edu	37	9	21007046	21007046	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	21007046	21007046	T	-	DEL	PTPLAD2	ENST00000495827	human	ensembl	74_37	-1	known	frame_shift_del	c.689	p.K230fs	1.000	NULL	pfam_Tyr_Pase-like_PTPLA	-	no_errors	PTPLAD2	HGNC	ENSG00000188921				169	0	0	123	10	7.5188
KIAA0020	0	genome.wustl.edu	37	9	2838446	2838446	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	2838446	2838446	T	-	DEL	KIAA0020	ENST00000397885	human	ensembl	74_37	-1	known	frame_shift_del	c.62	p.N21fs	0.000	NULL	pfam_CPL,superfamily_ARM-type_fold,smart_Pumilio_RNA-bd_rpt,pfscan_Pumilio_RNA-bd_rpt	-	no_errors	KIAA0020	HGNC	ENSG00000080608				181	1	0.549451	111	24	17.7778
TAF1L	0	genome.wustl.edu	37	9	32633584	32633584	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	32633584	32633584	T	-	DEL	TAF1L	ENST00000242310	human	ensembl	74_37	-1	known	frame_shift_del	c.1994	p.K665fs	1.000	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	TAF1L	HGNC	ENSG00000122728				140	0	0	120	9	6.97674
C9orf131	0	genome.wustl.edu	37	9	35043650	35043650	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	35043650	35043650	C	-	DEL	C9orf131	ENST00000312292	human	ensembl	74_37	+1	known	frame_shift_del	c.1024	p.C344fs	0.000	NULL	NULL	-	no_errors	C9orf131	HGNC	ENSG00000174038				397	0	0	314	74	19.0722
C9orf131	0	genome.wustl.edu	37	9	35045452	35045453	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	35045452	35045453	-	A	INS	C9orf131	ENST00000312292	human	ensembl	74_37	+1	known	frame_shift_ins	c.2826_2827	p.R944fs	0.015:0.016	NULL	NULL	-	no_errors	C9orf131	HGNC	ENSG00000174038				129	0	0	126	10	7.35294
PIGO	0	genome.wustl.edu	37	9	35091523	35091523	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	35091523	35091523	G	-	DEL	PIGO	ENST00000341666	human	ensembl	74_37	-1	known	frame_shift_del	c.2361	p.T788fs	0.393	NULL	pfam_Phosphodiest/P_Trfase,pfam_Metalloenzyme,pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	-	no_errors	PIGO	HGNC	ENSG00000165282				95	0	0	86	8	8.51064
TESK1	0	genome.wustl.edu	37	9	35608959	35608960	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	35608959	35608960	-	C	INS	TESK1	ENST00000336395	human	ensembl	74_37	+1	known	frame_shift_ins	c.1101_1102	p.N369fs	0.196:0.728	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	TESK1	HGNC	ENSG00000107140				77	0	0	115	12	9.44882
GRHPR	0	genome.wustl.edu	37	9	37436746	37436747	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	37436746	37436747	-	G	INS	GRHPR	ENST00000318158	human	ensembl	74_37	+1	known	frame_shift_ins	c.954_955	p.E319fs	0.991:1.000	pfam_D-isomer_2_OHA_DH_cat_dom	pfam_D-isomer_2_OHA_DH_NAD-bd,pfam_D-isomer_2_OHA_DH_cat_dom,pfam_6PGDH_NADP-bd	-	no_errors	GRHPR	HGNC	ENSG00000137106				236	0	0	207	13	5.90909
SPATA31A6	0	genome.wustl.edu	37	9	43627287	43627287	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	43627287	43627287	A	-	DEL	SPATA31A6	ENST00000332857	human	ensembl	74_37	-1	known	frame_shift_del	c.1400	p.F467fs	0.000	NULL	NULL	-	no_errors	SPATA31A6	HGNC	ENSG00000185775				654	0	0	539	85	13.6218
RANBP6	0	genome.wustl.edu	37	9	6015259	6015260	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	6015259	6015260	-	T	INS	RANBP6	ENST00000259569	human	ensembl	74_37	-1	known	frame_shift_ins	c.349_348	p.L116fs	1.000:1.000	superfamily_ARM-type_fold	pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	RANBP6	HGNC	ENSG00000137040				98	0	0	70	11	13.5802
TMEM2	0	genome.wustl.edu	37	9	74305064	74305064	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	74305064	74305064	A	-	DEL	TMEM2	ENST00000377044	human	ensembl	74_37	-1	known	frame_shift_del	c.3795	p.P1266fs	0.080	NULL	pfam_G8_domain,superfamily_Pectin_lyase_fold/virulence	-	no_errors	TMEM2	HGNC	ENSG00000135048				164	0	0	121	12	9.02256
VPS13A	0	genome.wustl.edu	37	9	79836219	79836219	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	79836219	79836219	A	-	DEL	VPS13A	ENST00000360280	human	ensembl	74_37	+1	known	frame_shift_del	c.1108	p.K372fs	1.000	NULL	pfam_VPSAP_dom,pfam_Autophagy-rel_C	-	no_errors	VPS13A	HGNC	ENSG00000197969				138	0	0	75	16	17.5824
VPS13A	0	genome.wustl.edu	37	9	79840849	79840849	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	79840849	79840849	A	-	DEL	VPS13A	ENST00000360280	human	ensembl	74_37	+1	known	frame_shift_del	c.1169	p.T392fs	1.000	NULL	pfam_VPSAP_dom,pfam_Autophagy-rel_C	-	no_errors	VPS13A	HGNC	ENSG00000197969				259	0	0	136	23	14.4654
VPS13A	0	genome.wustl.edu	37	9	79984308	79984308	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	79984308	79984308	T	-	DEL	VPS13A	ENST00000360280	human	ensembl	74_37	+1	known	frame_shift_del	c.8647	p.Y2885fs	1.000	NULL	pfam_VPSAP_dom,pfam_Autophagy-rel_C	-	no_errors	VPS13A	HGNC	ENSG00000197969				190	0	0	99	27	21.4286
WNK2	0	genome.wustl.edu	37	9	96051831	96051831	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	96051831	96051831	G	-	DEL	WNK2	ENST00000297954	human	ensembl	74_37	+1	known	frame_shift_del	c.4906	p.D1638fs	0.045	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	WNK2	HGNC	ENSG00000165238				13	0	0	21	6	22.2222
PTPDC1	0	genome.wustl.edu	37	9	96864017	96864017	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	9	96864017	96864017	T	-	DEL	PTPDC1	ENST00000375360	human	ensembl	74_37	+1	known	frame_shift_del	c.2021	p.L676fs	0.898	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Dual-sp_phosphatase_subgr_cat,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase	-	no_errors	PTPDC1	HGNC	ENSG00000158079				114	0	0	64	18	21.9512
WWC3	0	genome.wustl.edu	37	X	10084471	10084472	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	10084471	10084472	-	A	INS	WWC3	ENST00000380861	human	ensembl	74_37	+1	known	frame_shift_ins	c.988_989	p.R332fs	1.000:1.000	NULL	superfamily_C2_dom	-	no_errors	WWC3	HGNC	ENSG00000047644				251	1	0.396825	215	14	6.11354
RNF128	0	genome.wustl.edu	37	X	105937256	105937256	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	105937256	105937256	T	-	DEL	RNF128	ENST00000324342	human	ensembl	74_37	+1	known	frame_shift_del	c.24	p.W11fs	0.000	NULL	pfam_Protease-assoc_domain,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF128	HGNC	ENSG00000133135				109	1	0.909091	82	7	7.86517
IRS4	0	genome.wustl.edu	37	X	107977803	107977803	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	107977803	107977803	C	-	DEL	IRS4	ENST00000372129	human	ensembl	74_37	-1	known	frame_shift_del	c.1772	p.G591fs	0.016	NULL	pfam_Insln_rcpt_S1,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,pfscan_Pleckstrin_homology,pfscan_Insln_rcpt_S1,prints_Insln_rcpt_S1	-	no_errors	IRS4	HGNC	ENSG00000133124				270	0	0	188	95	33.5689
PAK3	0	genome.wustl.edu	37	X	110406911	110406912	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	110406911	110406912	-	A	INS	PAK3	ENST00000360648	human	ensembl	74_37	+1	known	frame_shift_ins	c.830_831	p.S280fs	1.000:1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_CRIB_dom,superfamily_Kinase-like_dom,smart_CRIB_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRIB_dom,pfscan_Prot_kinase_dom	-	no_errors	PAK3	HGNC	ENSG00000077264				178	0	0	161	10	5.84795
AMELX	0	genome.wustl.edu	37	X	11316741	11316742	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	11316741	11316742	-	C	INS	AMELX	ENST00000380712	human	ensembl	74_37	+1	known	frame_shift_ins	c.260_261	p.T90fs	0.988:0.955	pfam_Amelogenin,smart_Amelogenin	pfam_Amelogenin,smart_Amelogenin,prints_Amelogenin	-	no_errors	AMELX	HGNC	ENSG00000125363				115	0	0	108	28	20.5882
LUZP4	0	genome.wustl.edu	37	X	114537909	114537909	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	114537909	114537909	A	-	DEL	LUZP4	ENST00000371920	human	ensembl	74_37	+1	known	frame_shift_del	c.268	p.K91fs	0.000	NULL	NULL	-	no_errors	LUZP4	HGNC	ENSG00000102021				282	0	0	197	14	6.63507
CUL4B	0	genome.wustl.edu	37	X	119694117	119694119	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	GAG	GAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	119694117	119694119	GAG	-	DEL	CUL4B	ENST00000404115	human	ensembl	74_37	-1	known	in_frame_del	c.431_429	p.S146in_frame_del	0.999:1.000:1.000	NULL	pfam_Cullin_N,pfam_Cullin_neddylation_domain,superfamily_Cullin_repeat-like_dom,superfamily_Cullin_homology,smart_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL4B	HGNC	ENSG00000158290				77	0	0	53	9	14.5161
TENM1	0	genome.wustl.edu	37	X	123680796	123680797	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	123680796	123680797	-	A	INS	TENM1	ENST00000422452	human	ensembl	74_37	-1	known	frame_shift_ins	c.2579_2578	p.Y860fs	1.000:1.000	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,smart_EG-like_dom,pfscan_EG-like_dom,tigrfam_YD	-	no_errors	TENM1	HGNC	ENSG00000009694				136	0	0	94	15	13.7615
BCORL1	0	genome.wustl.edu	37	X	129190011	129190011	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	129190011	129190011	C	-	DEL	BCORL1	ENST00000303743	human	ensembl	74_37	+1	known	frame_shift_del	c.5258	p.P1755fs	0.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	BCORL1	HGNC	ENSG00000085185				86	0	0	100	11	9.90991
ELF4	0	genome.wustl.edu	37	X	129203441	129203441	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	129203441	129203441	G	-	DEL	ELF4	ENST00000308167	human	ensembl	74_37	-1	known	frame_shift_del	c.1021	p.Q341fs	0.022	NULL	pfam_TF_Elf_N,pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	ELF4	HGNC	ENSG00000102034				157	0	0	148	12	7.5
ARHGAP36	0	genome.wustl.edu	37	X	130215725	130215725	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	130215725	130215725	T	-	DEL	ARHGAP36	ENST00000276211	human	ensembl	74_37	+1	known	frame_shift_del	c.86	p.L31fs	0.957	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP36	HGNC	ENSG00000147256				183	1	0.543478	148	33	18.232
ATP11C	0	genome.wustl.edu	37	X	138827930	138827932	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	138827930	138827932	AAG	-	DEL	ATP11C	ENST00000327569	human	ensembl	74_37	-1	known	in_frame_del	c.2924_2922	p.F975in_frame_del	1.000:1.000:1.000	tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP11C	HGNC	ENSG00000101974				140	0	0	96	19	16.5217
ATP11C	0	genome.wustl.edu	37	X	138879450	138879453	+	Frame_Shift_Del	DEL	ATAA	ATAA	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	ATAA	ATAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	138879450	138879453	ATAA	-	DEL	ATP11C	ENST00000327569	human	ensembl	74_37	-1	known	frame_shift_del	c.902_899	p.F300fs	1.000:1.000:1.000:1.000	pfam_ATPase_P-typ_transduc_dom_A,tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP11C	HGNC	ENSG00000101974				140	0	0	105	11	9.48276
SLITRK2	0	genome.wustl.edu	37	X	144904117	144904118	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	144904117	144904118	-	C	INS	SLITRK2	ENST00000370490	human	ensembl	74_37	+1	known	frame_shift_ins	c.174_175	p.Q60fs	1.000:1.000	smart_LRR-contain_N	pfam_Leu-rich_rpt,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK2	HGNC	ENSG00000185985				101	0	0	77	10	11.4943
HMGB3	0	genome.wustl.edu	37	X	150156358	150156360	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	GAG	GAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	150156358	150156360	GAG	-	DEL	HMGB3	ENST00000325307	human	ensembl	74_37	+1	known	in_frame_del	c.574_576	p.E195in_frame_del	0.987:0.994:0.985	NULL	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	HMGB3	HGNC	ENSG00000029993				88	0	0	57	11	16.1765
PNMA3	0	genome.wustl.edu	37	X	152225444	152225444	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	152225444	152225444	G	-	DEL	PNMA3	ENST00000370264	human	ensembl	74_37	+1	known	frame_shift_del	c.32	p.E13fs	0.002	NULL	superfamily_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	PNMA3	HGNC	ENSG00000183837				115	0	0	105	6	5.40541
SRPK3	0	genome.wustl.edu	37	X	153050278	153050279	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	153050278	153050279	-	C	INS	SRPK3	ENST00000370101	human	ensembl	74_37	+1	known	frame_shift_ins	c.1322_1323	p.A444fs	1.000:0.993	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	-	no_errors	SRPK3	HGNC	ENSG00000184343				74	0	0	79	5	5.95238
ASMTL	0	genome.wustl.edu	37	X	1554640	1554640	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	1554640	1554640	C	-	DEL	ASMTL	ENST00000381317	human	ensembl	74_37	-1	known	frame_shift_del	c.285	p.L96fs	0.822	pfam_Maf,tigrfam_Maf	pfam_Maf,pfam_O_MeTrfase_2,tigrfam_Maf	-	no_errors	ASMTL	HGNC	ENSG00000169093				55	0	0	53	5	8.62069
TXLNG	0	genome.wustl.edu	37	X	16847845	16847845	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	16847845	16847845	G	-	DEL	TXLNG	ENST00000380122	human	ensembl	74_37	+1	known	frame_shift_del	c.816	p.E274fs	1.000	pfam_Taxilin_fam	pfam_Taxilin_fam	-	no_errors	TXLNG	HGNC	ENSG00000086712				67	0	0	43	13	23.2143
SCML2	0	genome.wustl.edu	37	X	18323102	18323103	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	18323102	18323103	-	G	INS	SCML2	ENST00000251900	human	ensembl	74_37	-1	known	frame_shift_ins	c.720_719	p.G241fs	1.000:1.000	NULL	pfam_Mbt,pfam_DUF3588,pfam_SAM_type1,superfamily_SAM/pointed,smart_Mbt,smart_SAM,pfscan_Mbt	-	no_errors	SCML2	HGNC	ENSG00000102098				353	1	0.282486	256	60	18.9873
ARSF	0	genome.wustl.edu	37	X	3019162	3019162	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	3019162	3019162	A	-	DEL	ARSF	ENST00000359361	human	ensembl	74_37	+1	known	frame_shift_del	c.1002	p.R335fs	0.023	pfam_Sulfatase,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	-	no_errors	ARSF	HGNC	ENSG00000062096				157	0	0	108	9	7.69231
PPP2R3B	0	genome.wustl.edu	37	X	302052	302052	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	302052	302052	T	-	DEL	PPP2R3B	ENST00000390665	human	ensembl	74_37	-1	known	frame_shift_del	c.1165	p.T389fs	1.000	pfscan_EF_hand_dom	pfscan_EF_hand_dom	-	no_errors	PPP2R3B	HGNC	ENSG00000167393				255	0	0	205	20	8.88889
CCNB3	0	genome.wustl.edu	37	X	50055623	50055624	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	50055623	50055624	AG	-	DEL	CCNB3	ENST00000276014	human	ensembl	74_37	+1	known	frame_shift_del	c.3414_3415	p.E1141fs	0.922:0.928	pfam_Cyclin_N,superfamily_Cyclin-like	pfam_Cyclin_N,pfam_Cyclin_C-dom,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	CCNB3	HGNC	ENSG00000147082				193	0	0	137	17	11.039
TSPYL2	0	genome.wustl.edu	37	X	53112185	53112187	+	In_Frame_Del	DEL	ATC	ATC	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	ATC	ATC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	53112185	53112187	ATC	-	DEL	TSPYL2	ENST00000375442	human	ensembl	74_37	+1	known	in_frame_del	c.505_507	p.I171in_frame_del	0.001:0.004:0.009	NULL	pfam_NAP_family	-	no_errors	TSPYL2	HGNC	ENSG00000184205				23	0	0	34	7	17.0732
IQSEC2	0	genome.wustl.edu	37	X	53285127	53285127	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	53285127	53285127	G	-	DEL	IQSEC2	ENST00000396435	human	ensembl	74_37	-1	known	frame_shift_del	c.854	p.P285fs	0.989	NULL	pfam_Sec7_dom,superfamily_Sec7_dom,superfamily_P-loop_NTPase,smart_Sec7_dom,smart_Pleckstrin_homology,pfscan_IQ_motif_EF-hand-BS,pfscan_Sec7_dom	-	no_errors	IQSEC2	HGNC	ENSG00000124313				15	0	0	12	6	33.3333
TSR2	0	genome.wustl.edu	37	X	54467179	54467179	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	54467179	54467179	G	-	DEL	TSR2	ENST00000375151	human	ensembl	74_37	+1	known	frame_shift_del	c.138	p.G48fs	0.998	pfam_Pre-rRNA_process_TSR2	pfam_Pre-rRNA_process_TSR2	-	no_errors	TSR2	HGNC	ENSG00000158526				66	0	0	51	5	8.92857
PFKFB1	0	genome.wustl.edu	37	X	54989787	54989787	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	54989787	54989787	G	-	DEL	PFKFB1	ENST00000375006	human	ensembl	74_37	-1	known	frame_shift_del	c.126	p.T43fs	0.978	pfam_6Phosfructo_kin,pfam_Zeta_toxin_domain,superfamily_P-loop_NTPase,pirsf_Bifunct_6PFK/fruc_bisP_Ptase	pfam_6Phosfructo_kin,pfam_His_Pase_superF_clade-1,pfam_Zeta_toxin_domain,superfamily_P-loop_NTPase,smart_His_Pase_superF_clade-1,pirsf_Bifunct_6PFK/fruc_bisP_Ptase,prints_6Pfruct_kin	-	no_errors	PFKFB1	HGNC	ENSG00000158571				135	0	0	118	14	10.6061
FAM104B	0	genome.wustl.edu	37	X	55172630	55172630	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	55172630	55172630	G	-	DEL	FAM104B	ENST00000332132	human	ensembl	74_37	-1	known	frame_shift_del	c.238	p.Q80fs	0.014	NULL	NULL	-	no_errors	FAM104B	HGNC	ENSG00000182518				207	0	0	152	11	6.74847
YIPF6	0	genome.wustl.edu	37	X	67738621	67738621	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	67738621	67738621	G	-	DEL	YIPF6	ENST00000462683	human	ensembl	74_37	+1	known	frame_shift_del	c.275	p.G93fs	1.000	pfam_Yip1	pfam_Yip1	-	no_errors	YIPF6	HGNC	ENSG00000181704				305	0	0	238	17	6.66667
TEX11	0	genome.wustl.edu	37	X	70127618	70127618	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	70127618	70127618	A	-	DEL	TEX11	ENST00000374333	human	ensembl	74_37	-1	known	frame_shift_del	c.22	p.S8fs	0.008	NULL	pfam_Meiosis_specific_SPO22,smart_TPR_repeat	-	no_errors	TEX11	HGNC	ENSG00000120498				114	0	0	66	10	13.1579
NHSL2	0	genome.wustl.edu	37	X	71360413	71360413	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	71360413	71360413	A	-	DEL	NHSL2	ENST00000540800	human	ensembl	74_37	+1	known	frame_shift_del	c.3015	p.K1007fs	0.966	NULL	NULL	-	no_errors	NHSL2	HGNC	ENSG00000204131				69	0	0	65	8	10.9589
ATRX	0	genome.wustl.edu	37	X	76939626	76939627	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	76939626	76939627	-	A	INS	ATRX	ENST00000373344	human	ensembl	74_37	-1	known	frame_shift_ins	c.1122_1121	p.L374fs	1.000:1.000	NULL	pfam_SNF2_N,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Znf_FYVE_PHD,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ATRX	HGNC	ENSG00000085224				401	0	0	275	34	11.0032
CYSLTR1	0	genome.wustl.edu	37	X	77528587	77528587	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	77528587	77528587	T	-	DEL	CYSLTR1	ENST00000373304	human	ensembl	74_37	-1	known	frame_shift_del	c.657	p.K219fs	0.005	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfam_7TM_GPCR_serpentine_rcpt_Srv,prints_CLT1_recept,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfam_7TM_GPCR_serpentine_rcpt_Srv,prints_Cyst_leuk_rcpt,prints_CLT1_recept,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	CYSLTR1	HGNC	ENSG00000173198				53	0	0	35	7	16.6667
DACH2	0	genome.wustl.edu	37	X	86069719	86069720	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	86069719	86069720	-	A	INS	DACH2	ENST00000373125	human	ensembl	74_37	+1	known	frame_shift_ins	c.1566_1567	p.T524fs	1.000:1.000	NULL	pfam_Transform_Ski,superfamily_DNA-bd_dom_put	-	no_errors	DACH2	HGNC	ENSG00000126733				77	0	0	46	7	13.2075
FAM9B	0	genome.wustl.edu	37	X	9001013	9001013	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	9001013	9001013	C	-	DEL	FAM9B	ENST00000327220	human	ensembl	74_37	-1	known	frame_shift_del	c.15	p.K6fs	0.001	NULL	pfam_Cor1/Xlr/Xmr	-	no_errors	FAM9B	HGNC	ENSG00000177138				89	0	0	84	7	7.69231
PCDH19	0	genome.wustl.edu	37	X	99662505	99662505	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6452-01A-12D-1800-08	TCGA-BR-6452-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c8e961b4-e324-40a2-89f6-736ec3845bc9	0f603726-fdae-4738-9e1c-f387a61d8e84	X	99662505	99662505	G	-	DEL	PCDH19	ENST00000373034	human	ensembl	74_37	-1	known	frame_shift_del	c.1091	p.P364fs	1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH19	HGNC	ENSG00000165194				81	0	0	75	8	9.63855
