Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
COL11A1	0	genome.wustl.edu	37	1	103345385	103345385	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	1	103345385	103345385	A	C	SNP	COL11A1	ENST00000358392	human	ensembl	74_37	-1	known	missense	c.5164	p.F1722V	1.000	pfam_Fib_collagen_C,smart_Fib_collagen_C	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL11A1	HGNC	ENSG00000060718				82	0	0	65	8	10.9589
CELSR2	0	genome.wustl.edu	37	1	109794410	109794410	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	1	109794410	109794410	G	A	SNP	CELSR2	ENST00000271332	human	ensembl	74_37	+1	known	missense	c.1709	p.R570Q	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_DUF3497,pfam_Laminin_G,pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EG-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR2	HGNC	ENSG00000143126				50	0	0	51	7	12.069
SMG5	0	genome.wustl.edu	37	1	156246933	156246933	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	1	156246933	156246933	A	T	SNP	SMG5	ENST00000361813	human	ensembl	74_37	-1	known	missense	c.397	p.Y133N	1.000	pfam_EST1	pfam_EST1,smart_PIN_dom	-	no_errors	SMG5	HGNC	ENSG00000198952				75	0	0	58	4	6.45161
CD1E	0	genome.wustl.edu	37	1	158324361	158324361	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	1	158324361	158324361	T	G	SNP	CD1E	ENST00000368167	human	ensembl	74_37	+1	known	missense	c.253	p.F85V	0.879	superfamily_MHC_I/II-like_Ag-recog	pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	CD1E	HGNC	ENSG00000158488				51	0	0	42	4	8.69565
OR10Z1	0	genome.wustl.edu	37	1	158576489	158576489	+	Silent	SNP	G	G	A			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	1	158576489	158576489	G	A	SNP	OR10Z1	ENST00000361284	human	ensembl	74_37	+1	known	silent	c.261	p.G87	0.001	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10Z1	HGNC	ENSG00000198967				311	1	0.320513	257	31	10.7639
CLCNKB	0	genome.wustl.edu	37	1	16377482	16377482	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	1	16377482	16377482	G	A	SNP	CLCNKB	ENST00000375679	human	ensembl	74_37	+1	known	nonsense	c.1166	p.W389*	0.002	pfam_Cl-channel_volt-gated,superfamily_Cl-channel_core	pfam_Cl-channel_volt-gated,pfam_CBS_dom,superfamily_Cl-channel_core,smart_CBS_dom,prints_Cl-channel_volt-gated,prints_Cl_channel-K	-	no_errors	CLCNKB	HGNC	ENSG00000184908				78	0	0	92	9	8.91089
EPHA2	0	genome.wustl.edu	37	1	16464906	16464906	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	1	16464906	16464906	A	T	SNP	EPHA2	ENST00000358432	human	ensembl	74_37	-1	known	missense	c.843	p.F281L	1.000	pirsf_Tyr_kinase_ephrin_rcpt,superfamily_Growth_fac_rcpt_N_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHA2	HGNC	ENSG00000142627				56	0	0	50	8	13.7931
CROCCP2	0	genome.wustl.edu	37	1	16946407	16946407	+	RNA	SNP	T	T	G			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	1	16946407	16946407	T	G	SNP	CROCCP2	ENST00000412962	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	CROCCP2	HGNC	ENSG00000215908				27	0	0	21	3	12.5
PTPRC	0	genome.wustl.edu	37	1	198711490	198711490	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	1	198711490	198711490	A	T	SNP	PTPRC	ENST00000442510	human	ensembl	74_37	+1	known	missense	c.2691	p.Q897H	1.000	pirsf_Leukocyte_common_ag,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	pirsf_Leukocyte_common_ag,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Leukocyte_common_ag,pfam_PTP_recept_N,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRC	HGNC	ENSG00000081237				136	0	0	101	12	10.6195
FMOD	0	genome.wustl.edu	37	1	203311556	203311556	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	1	203311556	203311556	C	T	SNP	FMOD	ENST00000354955	human	ensembl	74_37	-1	known	missense	c.1046	p.R349H	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	FMOD	HGNC	ENSG00000122176				50	0	0	39	7	15.2174
RAB3GAP2	0	genome.wustl.edu	37	1	220345380	220345380	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	1	220345380	220345380	C	T	SNP	RAB3GAP2	ENST00000358951	human	ensembl	74_37	-1	known	missense	c.2428	p.E810K	1.000	NULL	superfamily_WD40_repeat_dom	-	no_errors	RAB3GAP2	HGNC	ENSG00000118873				53	0	0	36	12	25
ERO1LB	0	genome.wustl.edu	37	1	236399099	236399099	+	Silent	SNP	C	C	T			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	1	236399099	236399099	C	T	SNP	ERO1LB	ENST00000354619	human	ensembl	74_37	-1	known	silent	c.663	p.A221	0.880	pfam_Ero1,pirsf_Ero1	pfam_Ero1,pirsf_Ero1	-	no_errors	ERO1LB	HGNC	ENSG00000086619				77	0	0	61	8	11.5942
FMN2	0	genome.wustl.edu	37	1	240256759	240256759	+	Silent	SNP	C	C	A			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	1	240256759	240256759	C	A	SNP	FMN2	ENST00000319653	human	ensembl	74_37	+1	known	silent	c.1350	p.S450	0.133	NULL	pfam_FH2_Formin,pfam_Formin_homology_1,smart_FH2_Formin,pfscan_DEP_dom	-	no_errors	FMN2	HGNC	ENSG00000155816				79	0	0	63	8	11.2676
FMN2	0	genome.wustl.edu	37	1	240555824	240555824	+	Silent	SNP	A	A	G			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	1	240555824	240555824	A	G	SNP	FMN2	ENST00000319653	human	ensembl	74_37	+1	known	silent	c.4872	p.Q1624	1.000	pfam_FH2_Formin,smart_FH2_Formin	pfam_FH2_Formin,pfam_Formin_homology_1,smart_FH2_Formin,pfscan_DEP_dom	-	no_errors	FMN2	HGNC	ENSG00000155816				118	0	0	136	18	11.6883
CLIC4	0	genome.wustl.edu	37	1	25124240	25124240	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	1	25124240	25124240	G	A	SNP	CLIC4	ENST00000374379	human	ensembl	74_37	+1	known	missense	c.80	p.S27N	1.000	superfamily_Thioredoxin-like_fold,tigrfam_Int_Cl_channel	superfamily_Glutathione-S-Trfase_C-like,superfamily_Thioredoxin-like_fold,prints_Int_Cl_channel,tigrfam_Int_Cl_channel	-	no_errors	CLIC4	HGNC	ENSG00000169504				107	0	0	104	8	7.14286
SPOCD1	0	genome.wustl.edu	37	1	32265646	32265646	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	1	32265646	32265646	C	T	SNP	SPOCD1	ENST00000360482	human	ensembl	74_37	-1	known	missense	c.1699	p.D567N	0.000	NULL	pfam_TFIIS_cen_dom,pfam_SPOC_C,superfamily_TFIIS_cen_dom,smart_TFS2M	-	no_errors	SPOCD1	HGNC	ENSG00000134668				44	0	0	39	8	17.0213
TRIT1	0	genome.wustl.edu	37	1	40307584	40307584	+	Silent	SNP	C	C	T			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	1	40307584	40307584	C	T	SNP	TRIT1	ENST00000316891	human	ensembl	74_37	-1	known	silent	c.1236	p.A412	0.842	pfam_Znf_C2H2_jaz,smart_Znf_U1	pfam_IPPT,pfam_Isopentenyl_transferase,pfam_Znf_C2H2_jaz,superfamily_P-loop_NTPase,smart_Znf_U1,tigrfam_tRNA_delta_PyrP_Trfase	-	no_errors	TRIT1	HGNC	ENSG00000043514				89	0	0	68	6	8.10811
CYP4A22	0	genome.wustl.edu	37	1	47609043	47609043	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	1	47609043	47609043	C	T	SNP	CYP4A22	ENST00000371891	human	ensembl	74_37	+1	known	nonsense	c.613	p.Q205*	0.180	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-II	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-II,prints_Cyt_P450_E_grp-IV	-	no_errors	CYP4A22	HGNC	ENSG00000162365				89	0	0	63	12	16
FAM159A	0	genome.wustl.edu	37	1	53099190	53099190	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	1	53099190	53099190	G	A	SNP	FAM159A	ENST00000517870	human	ensembl	74_37	+1	known	missense	c.25	p.V9M	0.997	NULL	NULL	-	no_errors	FAM159A	HGNC	ENSG00000182183				10	0	0	6	3	33.3333
LRRIQ3	0	genome.wustl.edu	37	1	74507160	74507160	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	1	74507160	74507160	T	G	SNP	LRRIQ3	ENST00000354431	human	ensembl	74_37	-1	known	missense	c.1455	p.Q485H	0.001	NULL	pfscan_IQ_motif_EF-hand-BS	-	no_errors	LRRIQ3	HGNC	ENSG00000162620				175	0	0	152	21	12.1387
ELTD1	0	genome.wustl.edu	37	1	79392711	79392711	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	1	79392711	79392711	A	C	SNP	ELTD1	ENST00000370742	human	ensembl	74_37	-1	known	missense	c.943	p.F315V	0.002	pfam_DUF3497	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_GPS_dom,pfam_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	ELTD1	HGNC	ENSG00000162618				87	0	0	98	11	10.0917
ELTD1	0	genome.wustl.edu	37	1	79403793	79403793	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	1	79403793	79403793	T	A	SNP	ELTD1	ENST00000370742	human	ensembl	74_37	-1	known	missense	c.568	p.T190S	1.000	pfam_DUF3497	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_GPS_dom,pfam_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	ELTD1	HGNC	ENSG00000162618				83	0	0	56	8	12.5
LPHN2	0	genome.wustl.edu	37	1	82416057	82416057	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	1	82416057	82416057	T	G	SNP	LPHN2	ENST00000370717	human	ensembl	74_37	+1	known	missense	c.1383	p.I461M	1.000	NULL	pfam_GPCR_2_latrophilin_rcpt_C,pfam_Olfac-like,pfam_DUF3497,pfam_GPCR_2_secretin-like,pfam_Lectin_gal-bd_dom,pfam_GPS_dom,pfam_GPCR_2_extracellular_dom,smart_Olfac-like,smart_GPCR_2_extracellular_dom,smart_GPS_dom,prints_GPCR_2_latrophilin,prints_GPCR_2_secretin-like,pfscan_GPS_dom,pfscan_Lectin_gal-bd_dom,pfscan_Olfac-like,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like	-	no_errors	LPHN2	HGNC	ENSG00000117114				44	0	0	48	4	7.69231
CLCA3P	0	genome.wustl.edu	37	1	87108241	87108241	+	RNA	SNP	T	T	C			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	1	87108241	87108241	T	C	SNP	CLCA3P	ENST00000284054	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	CLCA3P	HGNC	ENSG00000153923				49	0	0	29	5	14.7059
HFM1	0	genome.wustl.edu	37	1	91851178	91851178	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	1	91851178	91851178	G	T	SNP	HFM1	ENST00000370425	human	ensembl	74_37	-1	known	missense	c.708	p.F236L	0.080	NULL	pfam_Sec63-dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Sec63-dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	HFM1	HGNC	ENSG00000162669				56	0	0	50	11	18.0328
PYROXD2	0	genome.wustl.edu	37	10	100150465	100150465	+	Silent	SNP	G	G	A			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	10	100150465	100150465	G	A	SNP	PYROXD2	ENST00000370575	human	ensembl	74_37	-1	known	silent	c.1182	p.P394	0.000	NULL	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_Amino_oxidase	-	no_errors	PYROXD2	HGNC	ENSG00000119943				30	0	0	33	4	10.8108
HPS1	0	genome.wustl.edu	37	10	100179892	100179892	+	Silent	SNP	C	C	T			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	10	100179892	100179892	C	T	SNP	HPS1	ENST00000325103	human	ensembl	74_37	-1	known	silent	c.1767	p.A589	0.007	NULL	NULL	-	no_errors	HPS1	HGNC	ENSG00000107521				136	0	0	118	15	11.2782
PLXDC2	0	genome.wustl.edu	37	10	20465939	20465939	+	Silent	SNP	A	A	C			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	10	20465939	20465939	A	C	SNP	PLXDC2	ENST00000377252	human	ensembl	74_37	+1	known	silent	c.895	p.R299	1.000	NULL	pfam_Plexin_repeat,superfamily_Plexin-like_fold,smart_Plexin-like_fold	-	no_errors	PLXDC2	HGNC	ENSG00000120594				169	0	0	137	15	9.86842
GPR158	0	genome.wustl.edu	37	10	25701388	25701388	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	10	25701388	25701388	T	G	SNP	GPR158	ENST00000376351	human	ensembl	74_37	+1	known	missense	c.1321	p.F441V	1.000	pfam_GPCR_3_C,pfscan_GPCR_3_C	pfam_GPCR_3_C,pfscan_GPCR_3_C	-	no_errors	GPR158	HGNC	ENSG00000151025				187	0	0	136	30	18.0723
GPR158	0	genome.wustl.edu	37	10	25886999	25886999	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	10	25886999	25886999	A	C	SNP	GPR158	ENST00000376351	human	ensembl	74_37	+1	known	missense	c.2444	p.K815T	1.000	NULL	pfam_GPCR_3_C,pfscan_GPCR_3_C	-	no_errors	GPR158	HGNC	ENSG00000151025				118	0	0	97	16	14.1593
ARMC4	0	genome.wustl.edu	37	10	28250600	28250600	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	10	28250600	28250600	G	A	SNP	ARMC4	ENST00000305242	human	ensembl	74_37	-1	known	missense	c.1283	p.S428L	1.000	NULL	pfam_Armadillo,superfamily_ARM-type_fold,superfamily_GSKIP_dom,smart_Armadillo,pfscan_Armadillo	-	no_errors	ARMC4	HGNC	ENSG00000169126				59	0	0	52	8	13.3333
CDH23	0	genome.wustl.edu	37	10	73544140	73544140	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	10	73544140	73544140	G	A	SNP	CDH23	ENST00000224721	human	ensembl	74_37	+1	putative	missense	c.5480	p.C1827Y	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH23	HGNC	ENSG00000107736				105	0	0	65	8	10.9589
ZNF503	0	genome.wustl.edu	37	10	77158820	77158820	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	10	77158820	77158820	G	A	SNP	ZNF503	ENST00000372524	human	ensembl	74_37	-1	known	missense	c.1628	p.T543M	1.000	pfscan_Znf_C2H2	pfam_Tscrpt_rep_NocA-like,pfscan_Znf_C2H2	-	no_errors	ZNF503	HGNC	ENSG00000165655				43	0	0	33	3	8.33333
DYNC2H1	0	genome.wustl.edu	37	11	103058272	103058272	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	11	103058272	103058272	T	G	SNP	DYNC2H1	ENST00000398093	human	ensembl	74_37	+1	known	missense	c.7097	p.L2366R	1.000	superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DYNC2H1	HGNC	ENSG00000187240				92	0	0	78	21	21.2121
RAB39A	0	genome.wustl.edu	37	11	107832831	107832831	+	Silent	SNP	T	T	C			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	11	107832831	107832831	T	C	SNP	RAB39A	ENST00000320578	human	ensembl	74_37	+1	known	silent	c.387	p.C129	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB39A	HGNC	ENSG00000179331				55	0	0	69	11	13.75
LUZP2	0	genome.wustl.edu	37	11	25071622	25071622	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	11	25071622	25071622	A	C	SNP	LUZP2	ENST00000336930	human	ensembl	74_37	+1	known	missense	c.804	p.Q268H	0.018	NULL	NULL	-	no_errors	LUZP2	HGNC	ENSG00000187398				106	0	0	97	11	10.1852
DCDC1	0	genome.wustl.edu	37	11	31349807	31349807	+	Silent	SNP	T	T	C			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	11	31349807	31349807	T	C	SNP	DCDC1	ENST00000452803	human	ensembl	74_37	-1	known	silent	c.21	p.E7	0.057	NULL	pfscan_Doublecortin_dom	-	no_errors	DCDC1	HGNC	ENSG00000170959				91	0	0	58	13	18.3099
API5	0	genome.wustl.edu	37	11	43352073	43352073	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	11	43352073	43352073	G	A	SNP	API5	ENST00000531273	human	ensembl	74_37	+1	known	missense	c.1237	p.V413I	1.000	pfam_API5,superfamily_ARM-type_fold	pfam_API5,superfamily_ARM-type_fold	-	no_errors	API5	HGNC	ENSG00000166181				102	0	0	111	9	7.5
OR51A7	0	genome.wustl.edu	37	11	4928970	4928970	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	11	4928970	4928970	T	G	SNP	OR51A7	ENST00000359350	human	ensembl	74_37	+1	known	missense	c.371	p.L124R	0.990	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR51A7	HGNC	ENSG00000176895				126	0	0	86	29	25.2174
OR4A5	0	genome.wustl.edu	37	11	51412117	51412117	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	11	51412117	51412117	T	G	SNP	OR4A5	ENST00000319760	human	ensembl	74_37	-1	known	missense	c.279	p.Q93H	0.001	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4A5	HGNC	ENSG00000221840				70	0	0	49	11	18.3333
TRIM51	0	genome.wustl.edu	37	11	55657447	55657447	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	11	55657447	55657447	A	T	SNP	TRIM51	ENST00000449290	human	ensembl	74_37	+1	known	missense	c.791	p.E264V	0.001	NULL	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM51	HGNC	ENSG00000124900				49	0	0	44	6	12
OR5W2	0	genome.wustl.edu	37	11	55681965	55681965	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	11	55681965	55681965	A	C	SNP	OR5W2	ENST00000344514	human	ensembl	74_37	-1	known	missense	c.94	p.L32V	0.017	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5W2	HGNC	ENSG00000187612				77	0	0	50	8	13.7931
OR52E8	0	genome.wustl.edu	37	11	5878173	5878173	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	11	5878173	5878173	A	C	SNP	OR52E8	ENST00000537935	human	ensembl	74_37	-1	known	missense	c.760	p.L254V	0.978	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR52E8	HGNC	ENSG00000183269				117	0	0	117	12	9.30233
OR56A4	0	genome.wustl.edu	37	11	6023384	6023384	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	11	6023384	6023384	T	G	SNP	OR56A4	ENST00000330728	human	ensembl	74_37	-1	known	missense	c.995	p.N332T	0.002	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR56A4	HGNC	ENSG00000183389				78	0	0	52	10	16.129
FAT3	0	genome.wustl.edu	37	11	92533859	92533859	+	Silent	SNP	G	G	T			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	11	92533859	92533859	G	T	SNP	FAT3	ENST00000298047	human	ensembl	74_37	+1	known	silent	c.7680	p.R2560	0.809	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323				38	0	0	33	10	23.2558
CLEC2B	0	genome.wustl.edu	37	12	10007076	10007076	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	12	10007076	10007076	A	G	SNP	CLEC2B	ENST00000228438	human	ensembl	74_37	-1	known	missense	c.245	p.L82P	0.090	pfam_C-type_lectin,pfam_Herpes_UL45-like,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,pfam_Herpes_UL45-like,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	CLEC2B	HGNC	ENSG00000110852				74	0	0	63	9	12.5
KCNJ8	0	genome.wustl.edu	37	12	21919280	21919280	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	12	21919280	21919280	T	G	SNP	KCNJ8	ENST00000240662	human	ensembl	74_37	-1	known	missense	c.652	p.S218R	1.000	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir6.1	-	no_errors	KCNJ8	HGNC	ENSG00000121361				147	0	0	122	19	13.4752
CMAS	0	genome.wustl.edu	37	12	22218129	22218129	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	12	22218129	22218129	G	T	SNP	CMAS	ENST00000229329	human	ensembl	74_37	+1	known	missense	c.1189	p.A397S	0.996	superfamily_HAD-like_dom	pfam_Cytidylyl_trans,superfamily_HAD-like_dom	-	no_errors	CMAS	HGNC	ENSG00000111726				268	0	0	237	38	13.8182
FAR2	0	genome.wustl.edu	37	12	29449959	29449959	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	12	29449959	29449959	C	T	SNP	FAR2	ENST00000182377	human	ensembl	74_37	+1	known	missense	c.371	p.A124V	0.999	pfam_Male_sterile_NAD-bd,pfam_Epimerase_deHydtase,pfam_3Beta_OHSteriod_DH/Estase,pfam_Polysac_CapD-like	pfam_Male_sterile_NAD-bd,pfam_FAR,pfam_Epimerase_deHydtase,pfam_3Beta_OHSteriod_DH/Estase,pfam_Polysac_CapD-like	-	no_errors	FAR2	HGNC	ENSG00000064763				220	0	0	168	24	12.5
TESPA1	0	genome.wustl.edu	37	12	55356738	55356738	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	12	55356738	55356738	A	C	SNP	TESPA1	ENST00000316577	human	ensembl	74_37	-1	known	missense	c.944	p.V315G	1.000	NULL	NULL	-	no_errors	TESPA1	HGNC	ENSG00000135426				62	0	0	73	8	9.87654
CHD4	0	genome.wustl.edu	37	12	6702658	6702658	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	12	6702658	6702658	C	T	SNP	CHD4	ENST00000309577	human	ensembl	74_37	-1	known	missense	c.2438	p.R813H	1.000	pfam_SNF2_N,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_CHD_C2,pfam_DUF1086,pfam_SNF2_N,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,superfamily_Homeodomain-like,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD4	HGNC	ENSG00000111642				218	0	0	172	20	10.4167
LAG3	0	genome.wustl.edu	37	12	6883914	6883914	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	12	6883914	6883914	C	T	SNP	LAG3	ENST00000203629	human	ensembl	74_37	+1	known	missense	c.665	p.A222V	0.000	smart_Ig_sub,pfscan_Ig-like_dom	smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	LAG3	HGNC	ENSG00000089692				93	0	0	57	6	9.52381
C12orf55	0	genome.wustl.edu	37	12	97045576	97045576	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	12	97045576	97045576	A	C	SNP	C12orf55	ENST00000524981	human	ensembl	74_37	+1	putative	missense	c.5083	p.N1695H	0.047	NULL	superfamily_Fibronectin_type3	-	no_errors	C12orf55	HGNC	ENSG00000188596				37	0	0	38	6	13.6364
NALCN	0	genome.wustl.edu	37	13	101710377	101710377	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	13	101710377	101710377	G	A	SNP	NALCN	ENST00000251127	human	ensembl	74_37	-1	known	missense	c.4937	p.T1646M	1.000	NULL	pfam_Ion_trans_dom	-	no_errors	NALCN	HGNC	ENSG00000102452				99	0	0	97	7	6.73077
NBEA	0	genome.wustl.edu	37	13	36141109	36141109	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	13	36141109	36141109	A	C	SNP	NBEA	ENST00000310336	human	ensembl	74_37	+1	known	missense	c.6990	p.E2330D	0.999	pfam_BEACH_dom,superfamily_BEACH_dom,pfscan_BEACH_dom	pfam_BEACH_dom,pfam_DUF1088,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_ConA-like_lec_gl_sf,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat_dom	-	no_errors	NBEA	HGNC	ENSG00000172915				135	0	0	141	18	11.3208
CCNA1	0	genome.wustl.edu	37	13	37012812	37012812	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	13	37012812	37012812	A	C	SNP	CCNA1	ENST00000255465	human	ensembl	74_37	+1	known	missense	c.701	p.K234T	0.794	pfam_Cyclin_N,superfamily_Cyclin-like,pirsf_Cyclin_A/B/D/E	pfam_Cyclin_N,pfam_Cyclin_C-dom,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_A/B/D/E	-	no_errors	CCNA1	HGNC	ENSG00000133101				61	0	0	57	6	9.52381
SMAD9	0	genome.wustl.edu	37	13	37453530	37453530	+	Silent	SNP	C	C	T			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	13	37453530	37453530	C	T	SNP	SMAD9	ENST00000379826	human	ensembl	74_37	-1	known	silent	c.297	p.P99	0.001	pfam_MAD_homology1_Dwarfin-type,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,pfscan_MAD_homology_MH1	pfam_SMAD_dom_Dwarfin-type,pfam_MAD_homology1_Dwarfin-type,pfam_Interferon_reg_factor-3,superfamily_SMAD_FHA_domain,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,smart_SMAD_dom_Dwarfin-type,pfscan_MAD_homology_MH1,pfscan_SMAD_dom_Dwarfin-type	-	no_errors	SMAD9	HGNC	ENSG00000120693				39	0	0	58	7	10.7692
TRPC4	0	genome.wustl.edu	37	13	38229268	38229268	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	13	38229268	38229268	T	G	SNP	TRPC4	ENST00000379681	human	ensembl	74_37	-1	known	missense	c.1841	p.N614T	1.000	pfam_Ion_trans_dom,prints_TRPC_channel,tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_TRPC4_channel,prints_TRPC_channel,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,tigrfam_TRP_channel	-	no_errors	TRPC4	HGNC	ENSG00000133107				45	0	0	29	5	14.7059
ZC3H13	0	genome.wustl.edu	37	13	46554086	46554086	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	13	46554086	46554086	A	C	SNP	ZC3H13	ENST00000242848	human	ensembl	74_37	-1	known	missense	c.1774	p.Y592D	1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H13	HGNC	ENSG00000123200				116	0	0	95	7	6.86275
KIAA0226L	0	genome.wustl.edu	37	13	46946186	46946186	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	13	46946186	46946186	G	A	SNP	KIAA0226L	ENST00000389908	human	ensembl	74_37	-1	known	missense	c.425	p.S142F	0.000	NULL	NULL	-	no_errors	KIAA0226L	HGNC	ENSG00000102445				54	0	0	63	8	11.2676
PCDH9	0	genome.wustl.edu	37	13	66878826	66878826	+	Silent	SNP	T	T	C			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	13	66878826	66878826	T	C	SNP	PCDH9	ENST00000377865	human	ensembl	74_37	-1	known	silent	c.3675	p.A1225	0.998	NULL	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH9	HGNC	ENSG00000184226				105	0	0	92	5	5.15464
SLITRK6	0	genome.wustl.edu	37	13	86368894	86368894	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	13	86368894	86368894	C	T	SNP	SLITRK6	ENST00000400286	human	ensembl	74_37	-1	known	missense	c.1750	p.V584I	0.995	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK6	HGNC	ENSG00000184564				102	0	0	103	14	11.9658
GPC6	0	genome.wustl.edu	37	13	93879749	93879749	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	13	93879749	93879749	G	C	SNP	GPC6	ENST00000377047	human	ensembl	74_37	+1	known	missense	c.40	p.G14R	1.000	NULL	pfam_Glypican	-	no_errors	GPC6	HGNC	ENSG00000183098				98	0	0	83	5	5.68182
MYH6	0	genome.wustl.edu	37	14	23874326	23874326	+	Silent	SNP	G	G	A			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	14	23874326	23874326	G	A	SNP	MYH6	ENST00000356287	human	ensembl	74_37	-1	known	silent	c.513	p.N171	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH6	HGNC	ENSG00000197616				102	0	0	76	7	8.43373
NOVA1	0	genome.wustl.edu	37	14	26918125	26918125	+	Silent	SNP	C	C	T			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	14	26918125	26918125	C	T	SNP	NOVA1	ENST00000539517	human	ensembl	74_37	-1	known	silent	c.564	p.G188	1.000	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	NOVA1	HGNC	ENSG00000139910				175	0	0	140	17	10.828
SNRPN	0	genome.wustl.edu	37	15	25220656	25220656	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	15	25220656	25220656	A	C	SNP	SNRPN	ENST00000444203	human	ensembl	74_37	+1	known	missense	c.167	p.K56T	1.000	pfam_Ribonucl_LSM,superfamily_LSM_dom,smart_Ribonucl_LSM_euk/arc,pirsf_snRNP-assoc_SmB/SmN	pfam_Ribonucl_LSM,superfamily_LSM_dom,smart_Ribonucl_LSM_euk/arc,pirsf_snRNP-assoc_SmB/SmN	-	no_errors	SNRPN	HGNC	ENSG00000128739				86	0	0	99	16	13.913
SNORD115-42	0	genome.wustl.edu	37	15	25492563	25492563	+	RNA	SNP	C	C	T			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	15	25492563	25492563	C	T	SNP	SNORD115-42	ENST00000364273	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.991	-	-	-	no_errors	SNORD115-42	HGNC	ENSG00000201143				325	0	0	300	24	7.40741
GABRA5	0	genome.wustl.edu	37	15	27128556	27128556	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	15	27128556	27128556	C	T	SNP	GABRA5	ENST00000335625	human	ensembl	74_37	+1	known	missense	c.349	p.R117C	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,prints_GABAAa_rcpt,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_GABAA_rcpt,prints_GABBAa5_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRA5	HGNC	ENSG00000186297				136	1	0.729927	99	16	13.913
RYR3	0	genome.wustl.edu	37	15	33905387	33905387	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	15	33905387	33905387	G	A	SNP	RYR3	ENST00000389232	human	ensembl	74_37	+1	known	missense	c.2168	p.R723Q	1.000	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838				31	0	0	12	3	20
RPUSD2	0	genome.wustl.edu	37	15	40866003	40866003	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	15	40866003	40866003	G	A	SNP	RPUSD2	ENST00000315616	human	ensembl	74_37	+1	known	nonsense	c.1181	p.W394*	1.000	superfamily_PsdUridine_synth_cat_dom,tigrfam_PsdUridine_synth_RluC/D	pfam_PsdUridine_synth_RsuA/RluD,superfamily_PsdUridine_synth_cat_dom,tigrfam_PsdUridine_synth_RluC/D	-	no_errors	RPUSD2	HGNC	ENSG00000166133				76	0	0	52	10	16.129
SECISBP2L	0	genome.wustl.edu	37	15	49325260	49325260	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	15	49325260	49325260	G	A	SNP	SECISBP2L	ENST00000559471	human	ensembl	74_37	-1	known	missense	c.566	p.P189L	1.000	NULL	pfam_Ribosomal_L7Ae/L30e/S12e/Gad45	-	no_errors	SECISBP2L	HGNC	ENSG00000138593				90	0	0	80	11	12.0879
RASGRF1	0	genome.wustl.edu	37	15	79356827	79356827	+	Silent	SNP	G	G	T			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	15	79356827	79356827	G	T	SNP	RASGRF1	ENST00000419573	human	ensembl	74_37	-1	known	silent	c.318	p.A106	0.774	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_Ras_GEF_dom,superfamily_DH-domain,smart_Pleckstrin_homology,smart_DH-domain,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_DH-domain,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGRF1	HGNC	ENSG00000058335				242	0	0	143	18	11.1801
IL21R	0	genome.wustl.edu	37	16	27460390	27460390	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	16	27460390	27460390	G	A	SNP	IL21R	ENST00000337929	human	ensembl	74_37	+1	known	missense	c.1403	p.R468Q	0.002	NULL	superfamily_Fibronectin_type3	-	no_errors	IL21R	HGNC	ENSG00000103522				51	0	0	37	5	11.9048
SRCAP	0	genome.wustl.edu	37	16	30727524	30727524	+	Splice_Site	SNP	G	G	A			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	16	30727524	30727524	G	A	SNP	SRCAP	ENST00000262518	human	ensembl	74_37	+1	known	splice_site	c.2630+1	e15+1	1.000	-	-	-	no_errors	SRCAP	HGNC	ENSG00000080603				142	0	0	120	19	13.6691
KAT8	0	genome.wustl.edu	37	16	31131665	31131665	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	16	31131665	31131665	C	T	SNP	KAT8	ENST00000448516	human	ensembl	74_37	+1	known	missense	c.292	p.R98W	1.000	pfam_Tudor-knot,superfamily_Chromodomain-like,smart_Chromo_domain/shadow	pfam_MOZ_SAS,pfam_Tudor-knot,superfamily_Acyl_CoA_acyltransferase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow	-	no_errors	KAT8	HGNC	ENSG00000103510				74	0	0	59	9	13.2353
LCAT	0	genome.wustl.edu	37	16	67976469	67976469	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	16	67976469	67976469	C	T	SNP	LCAT	ENST00000264005	human	ensembl	74_37	-1	known	missense	c.545	p.R182H	0.010	pfam_LACT/PDAT_acylTrfase	pfam_LACT/PDAT_acylTrfase	-	no_errors	LCAT	HGNC	ENSG00000213398				77	0	0	63	4	5.97015
WWP2	0	genome.wustl.edu	37	16	69922098	69922098	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	16	69922098	69922098	C	T	SNP	WWP2	ENST00000356003	human	ensembl	74_37	+1	known	missense	c.860	p.S287L	0.160	NULL	pfam_HECT,pfam_WW_dom,superfamily_HECT,superfamily_C2_dom,superfamily_WW_dom,smart_C2_dom,smart_WW_dom,smart_HECT,pfscan_HECT,pfscan_WW_dom	-	no_errors	WWP2	HGNC	ENSG00000198373				90	0	0	61	16	20.7792
GRIN2A	0	genome.wustl.edu	37	16	9857275	9857275	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	16	9857275	9857275	G	A	SNP	GRIN2A	ENST00000330684	human	ensembl	74_37	-1	known	missense	c.4126	p.R1376C	0.909	pfam_NMDAR2_C	pfam_NMDAR2_C,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2A	HGNC	ENSG00000183454				100	0	0	78	15	16.129
TEKT3	0	genome.wustl.edu	37	17	15211982	15211982	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	17	15211982	15211982	G	A	SNP	TEKT3	ENST00000338696	human	ensembl	74_37	-1	known	missense	c.1255	p.R419C	0.994	pfam_Tektin,prints_Tektin	pfam_Tektin,prints_Tektin	-	no_errors	TEKT3	HGNC	ENSG00000125409				109	1	0.909091	96	10	9.43396
UNC45B	0	genome.wustl.edu	37	17	33495277	33495277	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	17	33495277	33495277	C	T	SNP	UNC45B	ENST00000268876	human	ensembl	74_37	+1	known	missense	c.1349	p.T450M	0.996	pfam_UNC-45/Ring3,superfamily_ARM-type_fold	pfam_UNC-45/Ring3,superfamily_ARM-type_fold,smart_TPR_repeat,smart_Armadillo,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	UNC45B	HGNC	ENSG00000141161				87	0	0	66	12	15.3846
ITGAE	0	genome.wustl.edu	37	17	3631275	3631275	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	17	3631275	3631275	A	T	SNP	ITGAE	ENST00000263087	human	ensembl	74_37	-1	known	missense	c.3022	p.C1008S	1.000	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_Integrin_alpha_C_CS,smart_VWF_A,smart_Int_alpha_beta-p,prints_Integrin_alpha,pfscan_VWF_A	-	no_errors	ITGAE	HGNC	ENSG00000083457				91	0	0	92	5	5.15464
TMEM99	0	genome.wustl.edu	37	17	38990822	38990822	+	Silent	SNP	T	T	C			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	17	38990822	38990822	T	C	SNP	TMEM99	ENST00000301665	human	ensembl	74_37	+1	known	silent	c.54	p.C18	0.008	NULL	NULL	-	no_errors	TMEM99	HGNC	ENSG00000167920				84	0	0	70	11	13.5802
KRTAP4-11	0	genome.wustl.edu	37	17	39274415	39274415	+	Silent	SNP	C	C	T			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	17	39274415	39274415	C	T	SNP	KRTAP4-11	ENST00000391413	human	ensembl	74_37	-1	known	silent	c.153	p.R51	0.000	pfam_Keratin-assoc	pfam_Keratin-assoc	-	no_errors	KRTAP4-11	HGNC	ENSG00000212721				69	0	0	61	4	6.15385
KIF2B	0	genome.wustl.edu	37	17	51901928	51901928	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	17	51901928	51901928	T	G	SNP	KIF2B	ENST00000268919	human	ensembl	74_37	+1	known	missense	c.1534	p.S512A	0.998	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF2B	HGNC	ENSG00000141200				66	0	0	70	10	12.5
CEP112	0	genome.wustl.edu	37	17	64059183	64059183	+	Silent	SNP	A	A	C			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	17	64059183	64059183	A	C	SNP	CEP112	ENST00000392769	human	ensembl	74_37	-1	known	silent	c.972	p.R324	1.000	NULL	superfamily_t-SNARE	-	no_errors	CEP112	HGNC	ENSG00000154240				51	0	0	46	5	9.80392
ABCA5	0	genome.wustl.edu	37	17	67300886	67300886	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	17	67300886	67300886	G	A	SNP	ABCA5	ENST00000392677	human	ensembl	74_37	-1	known	missense	c.854	p.A285V	1.000	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA5	HGNC	ENSG00000154265				105	0	0	67	21	23.8636
ITGB4	0	genome.wustl.edu	37	17	73727404	73727404	+	Silent	SNP	C	C	T			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	17	73727404	73727404	C	T	SNP	ITGB4	ENST00000200181	human	ensembl	74_37	+1	known	silent	c.1170	p.F390	0.033	pirsf_Integrin_bsu-4,pfam_Integrin_bsu_N,smart_Integrin_bsu_N	pirsf_Integrin_bsu-4,pfam_Integrin_bsu_N,pfam_Fibronectin_type3,pfam_Calx_beta,pfam_Integrin_bsu_tail,pfam_EGF_extracell,superfamily_Fibronectin_type3,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like_fold,smart_Integrin_bsu_N,smart_Calx_beta,smart_Fibronectin_type3,prints_Integrin_bsu,pfscan_Fibronectin_type3	-	no_errors	ITGB4	HGNC	ENSG00000132470				98	0	0	72	8	10
KCNAB3	0	genome.wustl.edu	37	17	7826435	7826435	+	Silent	SNP	C	C	T			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	17	7826435	7826435	C	T	SNP	KCNAB3	ENST00000303790	human	ensembl	74_37	-1	known	silent	c.1200	p.P400	0.019	superfamily_NADP_OxRdtase_dom	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_K_chnl_volt-dep_bsu_KCNAB-rel,prints_K_chnl_volt-dep_bsu_KCNAB3,prints_K_chnl_volt-dep_bsu_KCNAB1,tigrfam_K_chnl_volt-dep_bsu_KCNAB	-	no_errors	KCNAB3	HGNC	ENSG00000170049				119	0	0	90	5	5.26316
RNF213	0	genome.wustl.edu	37	17	78282836	78282836	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	17	78282836	78282836	G	T	SNP	RNF213	ENST00000582970	human	ensembl	74_37	+1	known	missense	c.2520	p.L840F	0.000	NULL	superfamily_P-loop_NTPase,smart_AAA+_ATPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF213	HGNC	ENSG00000173821				173	0	0	134	22	14.1026
ASXL3	0	genome.wustl.edu	37	18	31319840	31319840	+	Silent	SNP	G	G	A			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	18	31319840	31319840	G	A	SNP	ASXL3	ENST00000269197	human	ensembl	74_37	+1	known	silent	c.2472	p.P824	0.026	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	ASXL3	HGNC	ENSG00000141431				60	0	0	44	9	16.9811
COLEC12	0	genome.wustl.edu	37	18	333120	333120	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	18	333120	333120	A	C	SNP	COLEC12	ENST00000400256	human	ensembl	74_37	-1	known	missense	c.1840	p.F614V	1.000	superfamily_C-type_lectin_fold,smart_C-type_lectin,prints_AntifreezeII,pfscan_C-type_lectin	pfam_C-type_lectin,pfam_Collagen,superfamily_C-type_lectin_fold,smart_C-type_lectin,prints_AntifreezeII,pfscan_C-type_lectin	-	no_errors	COLEC12	HGNC	ENSG00000158270				97	0	0	73	17	18.8889
RIT2	0	genome.wustl.edu	37	18	40323518	40323518	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	18	40323518	40323518	T	G	SNP	RIT2	ENST00000326695	human	ensembl	74_37	-1	known	missense	c.594	p.K198N	0.996	smart_Ran_GTPase	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RIT2	HGNC	ENSG00000152214				169	0	0	182	24	11.6505
LRRC30	0	genome.wustl.edu	37	18	7231390	7231390	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	18	7231390	7231390	T	G	SNP	LRRC30	ENST00000383467	human	ensembl	74_37	+1	known	missense	c.254	p.V85G	0.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC30	HGNC	ENSG00000206422				74	0	0	49	11	18.3333
CPAMD8	0	genome.wustl.edu	37	19	17091456	17091456	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	19	17091456	17091456	G	A	SNP	CPAMD8	ENST00000443236	human	ensembl	74_37	-1	known	missense	c.1577	p.P526L	1.000	pfam_A2M_N_2	pfam_A2M_comp,pfam_A2M_N_2,pfam_Methyltransf_FA,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_Kazal_dom,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd,smart_Kazal_dom	-	no_errors	CPAMD8	HGNC	ENSG00000160111				126	0	0	125	12	8.75912
CILP2	0	genome.wustl.edu	37	19	19655627	19655627	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	19	19655627	19655627	T	C	SNP	CILP2	ENST00000291495	human	ensembl	74_37	+1	known	missense	c.2273	p.V758A	1.000	NULL	pfam_Thrombospondin_1_rpt,pfam_Ig_I-set,superfamily_Thrombospondin_1_rpt,superfamily_CarboxyPept-like_regulatory,superfamily_Carb-bd-like_fold,smart_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom	-	no_errors	CILP2	HGNC	ENSG00000160161				28	0	0	19	7	26.9231
ZNF486	0	genome.wustl.edu	37	19	20308606	20308606	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	19	20308606	20308606	T	C	SNP	ZNF486	ENST00000335117	human	ensembl	74_37	+1	known	missense	c.1087	p.S363P	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF486	HGNC	ENSG00000256229				51	0	0	40	10	20
ZNF43	0	genome.wustl.edu	37	19	21992583	21992583	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	19	21992583	21992583	A	C	SNP	ZNF43	ENST00000354959	human	ensembl	74_37	-1	known	missense	c.256	p.F86V	0.003	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF43	HGNC	ENSG00000198521				118	0	0	113	9	7.37705
ZNF99	0	genome.wustl.edu	37	19	22941726	22941726	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	19	22941726	22941726	T	C	SNP	ZNF99	ENST00000397104	human	ensembl	74_37	-1	known	missense	c.712	p.R238G	0.001	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF99	HGNC	ENSG00000213973				75	0	0	75	8	9.63855
SNRPA	0	genome.wustl.edu	37	19	41263238	41263238	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	19	41263238	41263238	G	C	SNP	SNRPA	ENST00000243563	human	ensembl	74_37	+1	known	missense	c.75	p.E25D	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	SNRPA	HGNC	ENSG00000077312				62	0	0	45	7	13.4615
CEACAM3	0	genome.wustl.edu	37	19	42301736	42301736	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	19	42301736	42301736	G	A	SNP	CEACAM3	ENST00000357396	human	ensembl	74_37	+1	known	missense	c.280	p.A94T	0.007	pfam_Ig_V-set	pfam_Ig_V-set	-	no_errors	CEACAM3	HGNC	ENSG00000170956				249	1	0.4	188	31	14.1553
FPR2	0	genome.wustl.edu	37	19	52272262	52272262	+	Silent	SNP	T	T	G			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	19	52272262	52272262	T	G	SNP	FPR2	ENST00000340023	human	ensembl	74_37	+1	known	silent	c.351	p.G117	0.066	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Formyl_pep_rcpt,prints_GPCR_Rhodpsn,prints_Anphylx_rcpt,prints_DEZorph_rcpt	-	no_errors	FPR2	HGNC	ENSG00000171049				132	0	0	80	12	13.0435
ZNF649	0	genome.wustl.edu	37	19	52394692	52394692	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	19	52394692	52394692	G	A	SNP	ZNF649	ENST00000354957	human	ensembl	74_37	-1	known	missense	c.697	p.P233S	0.998	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF649	HGNC	ENSG00000198093				161	0	0	150	26	14.7727
NLRP7	0	genome.wustl.edu	37	19	55450806	55450806	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	19	55450806	55450806	T	G	SNP	NLRP7	ENST00000446217	human	ensembl	74_37	-1	known	missense	c.1465	p.K489Q	0.001	NULL	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP7	HGNC	ENSG00000167634				54	0	0	45	5	10
NLRP8	0	genome.wustl.edu	37	19	56477711	56477711	+	Silent	SNP	G	G	A			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	19	56477711	56477711	G	A	SNP	NLRP8	ENST00000291971	human	ensembl	74_37	+1	known	silent	c.2346	p.V782	0.000	smart_Leu-rich_rpt_RNase_inh_sub-typ	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP8	HGNC	ENSG00000179709				82	0	0	67	7	9.45946
DUS3L	0	genome.wustl.edu	37	19	5791136	5791136	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	19	5791136	5791136	G	A	SNP	DUS3L	ENST00000309061	human	ensembl	74_37	-1	known	missense	c.17	p.A6V	0.000	NULL	pfam_tRNA_hU_synthase	-	no_errors	DUS3L	HGNC	ENSG00000141994				12	0	0	14	3	17.6471
ZSCAN1	0	genome.wustl.edu	37	19	58565060	58565060	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	19	58565060	58565060	C	T	SNP	ZSCAN1	ENST00000282326	human	ensembl	74_37	+1	known	missense	c.868	p.R290W	0.696	NULL	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN1	HGNC	ENSG00000152467				76	0	0	66	4	5.71429
FBN3	0	genome.wustl.edu	37	19	8188407	8188407	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	19	8188407	8188407	C	T	SNP	FBN3	ENST00000270509	human	ensembl	74_37	-1	known	missense	c.3023	p.S1008N	1.000	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pirsf_FBN,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd_dom,pfam_TB_dom,pfam_EG-like_dom,superfamily_TB_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pirsf_FBN,pfscan_EG-like_dom	-	no_errors	FBN3	HGNC	ENSG00000142449				46	0	0	33	3	8.33333
MUC16	0	genome.wustl.edu	37	19	9086015	9086015	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	19	9086015	9086015	A	C	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.5800	p.L1934V	0.055	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				60	0	0	70	8	10.2564
ATP6V1C2	0	genome.wustl.edu	37	2	10912687	10912687	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	2	10912687	10912687	C	G	SNP	ATP6V1C2	ENST00000272238	human	ensembl	74_37	+1	known	missense	c.589	p.Q197E	1.000	pfam_ATPase_V1-cplx_csu	pfam_ATPase_V1-cplx_csu	-	no_errors	ATP6V1C2	HGNC	ENSG00000143882				407	0	0	336	25	6.92521
LRP1B	0	genome.wustl.edu	37	2	141201953	141201953	+	Silent	SNP	A	A	G			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	2	141201953	141201953	A	G	SNP	LRP1B	ENST00000389484	human	ensembl	74_37	-1	known	silent	c.10240	p.L3414	1.000	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702				137	0	0	119	26	17.931
LRP1B	0	genome.wustl.edu	37	2	141250226	141250226	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	2	141250226	141250226	T	C	SNP	LRP1B	ENST00000389484	human	ensembl	74_37	-1	known	missense	c.9071	p.E3024G	1.000	superfamily_Growth_fac_rcpt_N_dom	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702				155	0	0	140	12	7.89474
SCN1A	0	genome.wustl.edu	37	2	166893015	166893015	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	2	166893015	166893015	A	C	SNP	SCN1A	ENST00000303395	human	ensembl	74_37	-1	known	missense	c.2972	p.L991R	1.000	NULL	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_a1su,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN1A	HGNC	ENSG00000144285				47	0	0	41	5	10.8696
TTN	0	genome.wustl.edu	37	2	179437107	179437107	+	Silent	SNP	T	T	C			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	2	179437107	179437107	T	C	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	silent	c.66048	p.Q22016	0.989	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				73	0	0	56	4	6.66667
TTN	0	genome.wustl.edu	37	2	179472135	179472135	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	2	179472135	179472135	T	G	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.45576	p.E15192D	1.000	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Ig_sub	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				154	0	0	124	28	18.4211
ZNF804A	0	genome.wustl.edu	37	2	185802505	185802505	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	2	185802505	185802505	A	C	SNP	ZNF804A	ENST00000302277	human	ensembl	74_37	+1	known	missense	c.2382	p.E794D	0.133	NULL	pfam_Znf_C2H2_jaz	-	no_errors	ZNF804A	HGNC	ENSG00000170396				87	0	0	106	11	9.40171
MYT1L	0	genome.wustl.edu	37	2	1893207	1893207	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	2	1893207	1893207	T	C	SNP	MYT1L	ENST00000399161	human	ensembl	74_37	-1	known	missense	c.2326	p.S776G	1.000	pfam_Myelin_TF	pfam_Myelin_TF,pfam_Znf_C2HC	-	no_errors	MYT1L	HGNC	ENSG00000186487				93	0	0	61	4	6.15385
NAB1	0	genome.wustl.edu	37	2	191524263	191524263	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	2	191524263	191524263	C	T	SNP	NAB1	ENST00000337386	human	ensembl	74_37	+1	known	missense	c.361	p.R121W	1.000	NULL	pfam_Nab1_C,pfam_NAB_co-repressor_dom,pfam_Nab_N,superfamily_SAM/pointed	-	no_errors	NAB1	HGNC	ENSG00000138386				61	0	0	57	9	13.6364
MAP2	0	genome.wustl.edu	37	2	210569185	210569185	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	2	210569185	210569185	G	T	SNP	MAP2	ENST00000199940	human	ensembl	74_37	+1	known	missense	c.528	p.L176F	1.000	NULL	pfam_MAP_tubulin-bd_rpt	-	no_errors	MAP2	HGNC	ENSG00000078018				126	0	0	99	12	10.8108
FEV	0	genome.wustl.edu	37	2	219846688	219846688	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	2	219846688	219846688	C	T	SNP	FEV	ENST00000295727	human	ensembl	74_37	-1	known	missense	c.418	p.A140T	1.000	NULL	pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	FEV	HGNC	ENSG00000163497				32	0	0	24	5	17.2414
PAX3	0	genome.wustl.edu	37	2	223085988	223085988	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	2	223085988	223085988	G	A	SNP	PAX3	ENST00000392069	human	ensembl	74_37	-1	known	missense	c.911	p.T304M	1.000	NULL	pfam_Paired_dom,pfam_Pax7,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Paired_dom,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Paired_dom,prints_Paired_dom	-	no_errors	PAX3	HGNC	ENSG00000135903				289	0	0	249	20	7.43494
HDLBP	0	genome.wustl.edu	37	2	242168943	242168943	+	RNA	SNP	T	T	C			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	2	242168943	242168943	T	C	SNP	HDLBP	ENST00000484412	human	ensembl	74_37	-1	putative	rna	NULL	NULL	1.000	-	-	-	no_errors	HDLBP	HGNC	ENSG00000115677				11	0	0	8	6	42.8571
CENPO	0	genome.wustl.edu	37	2	25040575	25040575	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	2	25040575	25040575	G	A	SNP	CENPO	ENST00000260662	human	ensembl	74_37	+1	known	missense	c.803	p.R268Q	0.997	NULL	pfam_CENP-O	-	no_errors	CENPO	HGNC	ENSG00000138092				68	0	0	45	5	10
OTX1	0	genome.wustl.edu	37	2	63283145	63283145	+	Silent	SNP	G	G	A			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	2	63283145	63283145	G	A	SNP	OTX1	ENST00000282549	human	ensembl	74_37	+1	known	silent	c.759	p.A253	0.933	pfam_Otx_TF_C	pfam_Otx_TF_C,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Otx1_TF,prints_Otx_TF	-	no_errors	OTX1	HGNC	ENSG00000115507				135	0	0	99	19	16.1017
FRG1B	0	genome.wustl.edu	37	20	29614328	29614328	+	Splice_Site	SNP	G	G	A			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	20	29614328	29614328	G	A	SNP	FRG1B	ENST00000278882	human	ensembl	74_37	+1	known	splice_site	c.1+1	e0+1	0.990	-	-	-	no_errors	FRG1B	HGNC	ENSG00000149531				45	0	0	43	4	8.51064
SLC32A1	0	genome.wustl.edu	37	20	37356678	37356678	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	20	37356678	37356678	C	T	SNP	SLC32A1	ENST00000217420	human	ensembl	74_37	+1	known	missense	c.974	p.S325L	0.992	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC32A1	HGNC	ENSG00000101438				77	0	0	53	17	24.2857
ADRBK2	0	genome.wustl.edu	37	22	26100174	26100174	+	Silent	SNP	C	C	T			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	22	26100174	26100174	C	T	SNP	ADRBK2	ENST00000324198	human	ensembl	74_37	+1	known	silent	c.1326	p.G442	0.703	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_RGS_dom,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Regulat_G_prot_signal_superfam,pfscan_Prot_kinase_dom,prints_GPCR_kinase	-	no_errors	ADRBK2	HGNC	ENSG00000100077				75	0	0	76	6	7.31707
ZMAT5	0	genome.wustl.edu	37	22	30136716	30136716	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	22	30136716	30136716	T	G	SNP	ZMAT5	ENST00000344318	human	ensembl	74_37	-1	known	missense	c.194	p.Q65P	1.000	pfam_Znf_CCCH,smart_Znf_CCCH	pfam_Znf_CCCH,pfam_Znf_U1-C,smart_Znf_CCCH	-	no_errors	ZMAT5	HGNC	ENSG00000100319				18	0	0	17	3	15
TMPRSS6	0	genome.wustl.edu	37	22	37482353	37482353	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	22	37482353	37482353	C	T	SNP	TMPRSS6	ENST00000381792	human	ensembl	74_37	-1	known	missense	c.943	p.V315M	0.000	pirsf_Pept_S1A_matriptase-2,superfamily_CUB_dom	pirsf_Pept_S1A_matriptase-2,pfam_Peptidase_S1,pfam_LDrepeatLR_classA_rpt,pfam_SEA_dom,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,superfamily_CUB_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_Peptidase_S1,prints_Peptidase_S1A,prints_LDrepeatLR_classA_rpt,pfscan_CUB_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_Peptidase_S1	-	no_errors	TMPRSS6	HGNC	ENSG00000187045				41	0	0	33	4	10.8108
CACNA1I	0	genome.wustl.edu	37	22	40055734	40055734	+	Silent	SNP	C	C	T			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	22	40055734	40055734	C	T	SNP	CACNA1I	ENST00000336649	human	ensembl	74_37	+1	known	silent	c.2499	p.L833	1.000	pfam_Ion_trans_dom,prints_VDCCAlpha1	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_VDCCAlpha1	-	no_errors	CACNA1I	HGNC	ENSG00000100346				149	0	0	151	15	9.03614
MPPED1	0	genome.wustl.edu	37	22	43831011	43831011	+	Silent	SNP	C	C	T			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	22	43831011	43831011	C	T	SNP	MPPED1	ENST00000538182	human	ensembl	74_37	+1	known	silent	c.381	p.C127	0.658	NULL	pfam_PEstase_dom	-	no_errors	MPPED1	HGNC	ENSG00000186732				148	0	0	129	20	13.4228
STXBP5L	0	genome.wustl.edu	37	3	120764302	120764302	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	3	120764302	120764302	T	G	SNP	STXBP5L	ENST00000273666	human	ensembl	74_37	+1	known	missense	c.390	p.S130R	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_LLGL2,pfam_WD40_repeat,pfam_Lgl_C_dom,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,pfscan_Synaptobrevin,prints_Lethal2_giant	-	no_errors	STXBP5L	HGNC	ENSG00000145087				254	0	0	232	25	9.72763
STXBP5L	0	genome.wustl.edu	37	3	120977937	120977937	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	3	120977937	120977937	T	G	SNP	STXBP5L	ENST00000273666	human	ensembl	74_37	+1	known	missense	c.1880	p.L627R	1.000	superfamily_WD40_repeat_dom	pfam_LLGL2,pfam_WD40_repeat,pfam_Lgl_C_dom,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,pfscan_Synaptobrevin,prints_Lethal2_giant	-	no_errors	STXBP5L	HGNC	ENSG00000145087				89	0	0	50	12	19.3548
RASA2	0	genome.wustl.edu	37	3	141305575	141305575	+	Silent	SNP	C	C	T			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	3	141305575	141305575	C	T	SNP	RASA2	ENST00000452898	human	ensembl	74_37	+1	known	silent	c.1914	p.L638	1.000	pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,smart_RasGAP,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_RasGAP,pfam_C2_dom,pfam_Pleckstrin_homology,pfam_Znf_Btk_motif,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_C2_dom,smart_RasGAP,smart_Pleckstrin_homology,smart_Znf_Btk_motif,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_Znf_Btk_motif,pfscan_RasGAP,prints_Znf_Btk_motif	-	no_errors	RASA2	HGNC	ENSG00000155903				39	0	0	26	6	18.75
DHX36	0	genome.wustl.edu	37	3	153995437	153995437	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	3	153995437	153995437	C	T	SNP	DHX36	ENST00000496811	human	ensembl	74_37	-1	known	missense	c.2638	p.D880N	0.989	pfam_DUF1605	pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX36	HGNC	ENSG00000174953				80	0	0	56	9	13.8462
KCNH8	0	genome.wustl.edu	37	3	19575469	19575469	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	3	19575469	19575469	T	G	SNP	KCNH8	ENST00000328405	human	ensembl	74_37	+1	known	missense	c.3202	p.L1068V	0.996	NULL	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_2pore_dom_K_chnl_dom,pfam_PAS_fold_3,pfam_PAS_4,pfam_PAS_fold,superfamily_cNMP-bd-like,superfamily_PAS,superfamily_tRNA-bd_arm,smart_PAC,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,pfscan_PAS-assoc_C,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ELK,prints_K_chnl_volt-dep_ERG,prints_K_chnl_volt-dep_EAG,tigrfam_PAS	-	no_errors	KCNH8	HGNC	ENSG00000183960				67	0	0	57	7	10.9375
MYRIP	0	genome.wustl.edu	37	3	40275351	40275351	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	3	40275351	40275351	A	C	SNP	MYRIP	ENST00000302541	human	ensembl	74_37	+1	known	missense	c.1907	p.K636T	1.000	pfam_Myrip/Melanophilin	pfam_Myrip/Melanophilin,superfamily_Znf_FYVE_PHD,pfscan_Znf_FYVE-typ	-	no_errors	MYRIP	HGNC	ENSG00000170011				108	0	0	72	12	14.2857
NBEAL2	0	genome.wustl.edu	37	3	47049917	47049917	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	3	47049917	47049917	C	T	SNP	NBEAL2	ENST00000450053	human	ensembl	74_37	+1	known	missense	c.7864	p.R2622C	0.395	superfamily_WD40_repeat_dom	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl_sf,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NBEAL2	HGNC	ENSG00000160796				58	0	0	50	8	13.7931
GRM2	0	genome.wustl.edu	37	3	51746766	51746766	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	3	51746766	51746766	G	A	SNP	GRM2	ENST00000395052	human	ensembl	74_37	+1	known	missense	c.728	p.R243H	1.000	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_3	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_2,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_3,prints_GPCR_3_GABA_rcpt_B	-	no_errors	GRM2	HGNC	ENSG00000164082				40	0	0	41	6	12.766
PRICKLE2	0	genome.wustl.edu	37	3	64085187	64085187	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	3	64085187	64085187	C	T	SNP	PRICKLE2	ENST00000295902	human	ensembl	74_37	-1	known	missense	c.2075	p.R692H	1.000	NULL	pfam_PET_domain,pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	PRICKLE2	HGNC	ENSG00000163637				82	0	0	63	7	10
ADAMTS9	0	genome.wustl.edu	37	3	64619467	64619467	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	3	64619467	64619467	A	C	SNP	ADAMTS9	ENST00000498707	human	ensembl	74_37	-1	known	missense	c.1945	p.F649V	1.000	NULL	pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS9	HGNC	ENSG00000163638				132	0	0	138	21	13.2075
CNTN3	0	genome.wustl.edu	37	3	74418456	74418456	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	3	74418456	74418456	T	G	SNP	CNTN3	ENST00000263665	human	ensembl	74_37	-1	known	missense	c.830	p.K277T	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CNTN3	HGNC	ENSG00000113805				83	0	0	73	10	12.0482
EPHA3	0	genome.wustl.edu	37	3	89176408	89176408	+	Silent	SNP	T	T	C			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	3	89176408	89176408	T	C	SNP	EPHA3	ENST00000336596	human	ensembl	74_37	+1	known	silent	c.138	p.S46	0.997	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ephrin_rcpt_lig-bd_dom,superfamily_Galactose-bd-like,smart_Ephrin_rcpt_lig-bd_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_2,pfam_SAM_type1,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHA3	HGNC	ENSG00000044524				154	1	0.645161	129	11	7.85714
DDIT4L	0	genome.wustl.edu	37	4	101108874	101108874	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	4	101108874	101108874	A	G	SNP	DDIT4L	ENST00000273990	human	ensembl	74_37	-1	known	missense	c.542	p.L181P	1.000	pfam_RTP801-like	pfam_RTP801-like	-	no_errors	DDIT4L	HGNC	ENSG00000145358				115	0	0	94	11	10.4762
SEC24B	0	genome.wustl.edu	37	4	110447513	110447513	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	4	110447513	110447513	T	G	SNP	SEC24B	ENST00000265175	human	ensembl	74_37	+1	known	missense	c.2923	p.L975V	0.064	pfam_Sec23_24_beta_S	pfam_Sec23/24_trunk_dom,pfam_Sec23/24_helical_dom,pfam_Sec23_24_beta_S,pfam_Znf_Sec23_Sec24,pfam_Gelsolin_dom,superfamily_Sec23/24_helical_dom,superfamily_Znf_Sec23_Sec24	-	no_errors	SEC24B	HGNC	ENSG00000138802				84	0	0	77	12	13.4831
NDST4	0	genome.wustl.edu	37	4	115898357	115898357	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	4	115898357	115898357	T	G	SNP	NDST4	ENST00000264363	human	ensembl	74_37	-1	known	missense	c.1052	p.K351T	1.000	pfam_Heparan_SO4_deacetylase	pfam_Heparan_SO4_deacetylase,pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	NDST4	HGNC	ENSG00000138653				160	0	0	107	16	13.0081
FAT4	0	genome.wustl.edu	37	4	126237573	126237573	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	4	126237573	126237573	T	G	SNP	FAT4	ENST00000394329	human	ensembl	74_37	+1	known	missense	c.7	p.L3V	1.000	NULL	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159				255	0	0	199	32	13.8528
FAT4	0	genome.wustl.edu	37	4	126370493	126370493	+	Silent	SNP	T	T	C			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	4	126370493	126370493	T	C	SNP	FAT4	ENST00000394329	human	ensembl	74_37	+1	known	silent	c.8322	p.S2774	0.826	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159				137	0	0	140	14	9.09091
TDO2	0	genome.wustl.edu	37	4	156838589	156838589	+	Silent	SNP	T	T	C			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	4	156838589	156838589	T	C	SNP	TDO2	ENST00000536354	human	ensembl	74_37	+1	known	silent	c.939	p.S313	0.005	pfam_Trp_2_3_dOase	pfam_Trp_2_3_dOase	-	no_errors	TDO2	HGNC	ENSG00000151790				105	0	0	78	10	11.3636
FSTL5	0	genome.wustl.edu	37	4	162508614	162508614	+	Silent	SNP	T	T	C			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	4	162508614	162508614	T	C	SNP	FSTL5	ENST00000306100	human	ensembl	74_37	-1	known	silent	c.1008	p.Q336	1.000	smart_Ig_sub	pfam_Ig_I-set,pfam_Kazal_dom,pfam_Ig_V-set,smart_Kazal_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_EF_hand_dom,pfscan_Ig-like_dom	-	no_errors	FSTL5	HGNC	ENSG00000168843				100	0	0	98	13	11.7117
SPOCK3	0	genome.wustl.edu	37	4	167833778	167833778	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	4	167833778	167833778	G	A	SNP	SPOCK3	ENST00000357154	human	ensembl	74_37	-1	known	missense	c.476	p.S159F	1.000	pfam_Kazal_dom,smart_Kazal_dom	pfam_SPARC/Testican_Ca-bd-dom,pfam_Thyroglobulin_1,pfam_Kazal_dom,superfamily_Thyroglobulin_1,smart_Kazal_dom,smart_Thyroglobulin_1,pfscan_Thyroglobulin_1	-	no_errors	SPOCK3	HGNC	ENSG00000196104				58	0	0	49	6	10.9091
SLC34A2	0	genome.wustl.edu	37	4	25677985	25677985	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	4	25677985	25677985	G	A	SNP	SLC34A2	ENST00000382051	human	ensembl	74_37	+1	known	missense	c.1687	p.V563I	0.000	tigrfam_Na/Pi_transpt	pfam_Na/Pi_transpt,superfamily_ABC1_TM_dom,tigrfam_Na/Pi_transpt	-	no_errors	SLC34A2	HGNC	ENSG00000157765				137	0	0	113	6	5.04202
PPP2R2C	0	genome.wustl.edu	37	4	6335368	6335368	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	4	6335368	6335368	C	T	SNP	PPP2R2C	ENST00000335585	human	ensembl	74_37	-1	known	missense	c.881	p.R294H	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_PP2A_PR55,prints_PP2A_PR55	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_PP2A_PR55,prints_PP2A_PR55	-	no_errors	PPP2R2C	HGNC	ENSG00000074211				175	0	0	111	30	21.2766
EPHA5	0	genome.wustl.edu	37	4	66356149	66356149	+	Silent	SNP	A	A	G			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	4	66356149	66356149	A	G	SNP	EPHA5	ENST00000273854	human	ensembl	74_37	-1	known	silent	c.1348	p.L450	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfscan_Fibronectin_type3	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,pirsf_Tyr_kinase_ephrin_rcpt,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	EPHA5	HGNC	ENSG00000145242				103	1	0.961538	86	14	14
UNC5C	0	genome.wustl.edu	37	4	96140209	96140209	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	4	96140209	96140209	T	G	SNP	UNC5C	ENST00000453304	human	ensembl	74_37	-1	known	missense	c.1556	p.N519T	0.996	NULL	pfam_ZU5,pfam_Death_domain,pfam_Ig_I-set,pfam_Thrombospondin_1_rpt,superfamily_DEATH-like_dom,superfamily_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,smart_Thrombospondin_1_rpt,smart_ZU5,smart_Death_domain,pfscan_Thrombospondin_1_rpt,pfscan_ZU5,pfscan_Ig-like_dom	-	no_errors	UNC5C	HGNC	ENSG00000182168				126	0	0	104	16	13.3333
KCNN2	0	genome.wustl.edu	37	5	113740388	113740388	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	5	113740388	113740388	T	G	SNP	KCNN2	ENST00000264773	human	ensembl	74_37	+1	known	missense	c.836	p.L279R	1.000	NULL	pfam_K_chnl_Ca-activ_SK,pfam_CaM-bd_dom,pfam_2pore_dom_K_chnl_dom,superfamily_CaM-bd_dom,prints_K_chnl_Ca-activ_SK	-	no_errors	KCNN2	HGNC	ENSG00000080709				112	0	0	97	16	14.1593
PRR16	0	genome.wustl.edu	37	5	120022263	120022263	+	Silent	SNP	T	T	A			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	5	120022263	120022263	T	A	SNP	PRR16	ENST00000407149	human	ensembl	74_37	+1	known	silent	c.774	p.P258	1.000	NULL	NULL	-	no_errors	PRR16	HGNC	ENSG00000184838				51	0	0	58	7	10.7692
PDLIM4	0	genome.wustl.edu	37	5	131606705	131606705	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	5	131606705	131606705	G	A	SNP	PDLIM4	ENST00000253754	human	ensembl	74_37	+1	known	missense	c.425	p.R142H	0.192	NULL	pfam_PDZ,pfam_Znf_LIM,superfamily_PDZ,smart_PDZ,smart_Znf_LIM,pfscan_Znf_LIM,pfscan_PDZ	-	no_errors	PDLIM4	HGNC	ENSG00000131435				145	0	0	138	15	9.80392
KDM3B	0	genome.wustl.edu	37	5	137717277	137717277	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	5	137717277	137717277	G	A	SNP	KDM3B	ENST00000314358	human	ensembl	74_37	+1	known	missense	c.778	p.E260K	0.993	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	KDM3B	HGNC	ENSG00000120733				77	0	0	43	6	12.2449
PCDHB6	0	genome.wustl.edu	37	5	140532003	140532003	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	5	140532003	140532003	G	A	SNP	PCDHB6	ENST00000231136	human	ensembl	74_37	+1	known	missense	c.2165	p.R722H	0.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB6	HGNC	ENSG00000113211				243	0	0	176	20	10.2041
PCDHGA8	0	genome.wustl.edu	37	5	140772818	140772818	+	Silent	SNP	G	G	A			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	5	140772818	140772818	G	A	SNP	PCDHGA8	ENST00000398604	human	ensembl	74_37	+1	known	silent	c.438	p.A146	0.003	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA8	HGNC	ENSG00000253767				96	0	0	75	10	11.7647
GABRA6	0	genome.wustl.edu	37	5	161113274	161113274	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	5	161113274	161113274	A	C	SNP	GABRA6	ENST00000274545	human	ensembl	74_37	+1	known	missense	c.77	p.N26T	0.975	prints_GABBAa6_rcpt,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_GABAA_rcpt,prints_GABBAa6_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRA6	HGNC	ENSG00000145863				114	0	0	106	11	9.40171
FAM153B	0	genome.wustl.edu	37	5	175526047	175526047	+	Silent	SNP	C	C	T			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	5	175526047	175526047	C	T	SNP	FAM153B	ENST00000253490	human	ensembl	74_37	+1	known	silent	c.561	p.N187	0.000	NULL	prints_FAM153	-	no_errors	FAM153B	HGNC	ENSG00000182230				105	0	0	108	9	7.69231
GRM6	0	genome.wustl.edu	37	5	178416042	178416042	+	Silent	SNP	G	G	A			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	5	178416042	178416042	G	A	SNP	GRM6	ENST00000231188	human	ensembl	74_37	-1	known	silent	c.1248	p.H416	1.000	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_6,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_4	-	no_errors	GRM6	HGNC	ENSG00000113262				37	0	0	26	5	16.129
CDH18	0	genome.wustl.edu	37	5	19473497	19473497	+	Silent	SNP	A	A	G			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	5	19473497	19473497	A	G	SNP	CDH18	ENST00000274170	human	ensembl	74_37	-1	known	silent	c.2211	p.T737	0.987	pfam_Cadherin_cytoplasmic-dom	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH18	HGNC	ENSG00000145526				88	0	0	85	15	15
CDH12	0	genome.wustl.edu	37	5	21755750	21755750	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	5	21755750	21755750	A	G	SNP	CDH12	ENST00000382254	human	ensembl	74_37	-1	known	missense	c.1835	p.L612P	1.000	NULL	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH12	HGNC	ENSG00000154162				81	0	0	76	8	9.52381
SPEF2	0	genome.wustl.edu	37	5	35763665	35763665	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	5	35763665	35763665	T	G	SNP	SPEF2	ENST00000356031	human	ensembl	74_37	+1	known	missense	c.3662	p.V1221G	0.000	NULL	pfam_DUF1042,pfam_Adenylate_kin,pfam_HATC_dom_C,superfamily_P-loop_NTPase,superfamily_CH-domain,pfscan_CH-domain	-	no_errors	SPEF2	HGNC	ENSG00000152582				76	0	0	76	5	6.17284
EGFLAM	0	genome.wustl.edu	37	5	38425137	38425137	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	5	38425137	38425137	G	T	SNP	EGFLAM	ENST00000354891	human	ensembl	74_37	+1	known	missense	c.1753	p.A585S	1.000	pfam_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_Laminin_G,pfam_Fibronectin_type3,pfam_EG-like_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3,pfscan_Laminin_G	-	no_errors	EGFLAM	HGNC	ENSG00000164318				174	0	0	138	19	12.1019
GHR	0	genome.wustl.edu	37	5	42689103	42689103	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	5	42689103	42689103	A	G	SNP	GHR	ENST00000230882	human	ensembl	74_37	+1	known	missense	c.248	p.Q83R	0.998	pfam_Growth/epo_recpt_lig-bind,superfamily_Fibronectin_type3	pfam_Growth/epo_recpt_lig-bind,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	GHR	HGNC	ENSG00000112964				138	0	0	124	20	13.8889
MARVELD2	0	genome.wustl.edu	37	5	68715518	68715518	+	Silent	SNP	G	G	A			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	5	68715518	68715518	G	A	SNP	MARVELD2	ENST00000325631	human	ensembl	74_37	+1	known	silent	c.306	p.P102	0.000	NULL	pfam_Occludin_RNApol2_elong_fac_ELL,pfam_Marvel	-	no_errors	MARVELD2	HGNC	ENSG00000152939				70	0	0	77	5	6.09756
GRIK2	0	genome.wustl.edu	37	6	102069857	102069857	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	6	102069857	102069857	T	G	SNP	GRIK2	ENST00000421544	human	ensembl	74_37	+1	known	missense	c.149	p.M50R	1.000	superfamily_Peripla_BP_I	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK2	HGNC	ENSG00000164418				62	0	0	52	16	23.5294
HIST1H2BK	0	genome.wustl.edu	37	6	27114186	27114186	+	Splice_Site	SNP	A	A	C			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	6	27114186	27114186	A	C	SNP	HIST1H2BK	ENST00000396891	human	ensembl	74_37	-1	known	splice_site	c.381+2	e1+2	0.000	-	-	-	no_errors	HIST1H2BK	HGNC	ENSG00000197903				132	0	0	114	27	19.1489
ZNF311	0	genome.wustl.edu	37	6	28963238	28963238	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	6	28963238	28963238	A	T	SNP	ZNF311	ENST00000377179	human	ensembl	74_37	-1	known	missense	c.1541	p.L514H	0.822	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF311	HGNC	ENSG00000197935				66	0	0	44	20	31.25
OR12D2	0	genome.wustl.edu	37	6	29364723	29364723	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	6	29364723	29364723	T	G	SNP	OR12D2	ENST00000383555	human	ensembl	74_37	+1	known	missense	c.247	p.F83V	0.003	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR12D2	HGNC	ENSG00000168787				103	1	0.961538	69	24	25.8065
ATAT1	0	genome.wustl.edu	37	6	30596123	30596123	+	Silent	SNP	G	G	A			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	6	30596123	30596123	G	A	SNP	ATAT1	ENST00000376485	human	ensembl	74_37	+1	known	silent	c.453	p.P151	0.989	pfam_Alpha-TAT	pfam_Alpha-TAT,superfamily_Acyl_CoA_acyltransferase	-	no_errors	ATAT1	HGNC	ENSG00000137343				46	0	0	48	11	18.6441
HLA-DOA	0	genome.wustl.edu	37	6	32975992	32975992	+	Silent	SNP	G	G	A			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	6	32975992	32975992	G	A	SNP	HLA-DOA	ENST00000229829	human	ensembl	74_37	-1	known	silent	c.129	p.G43	0.000	pfam_MHC_II_a_N,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_a_N	pfam_MHC_II_a_N,pfam_Ig_C1-set,pfam_CD80_C2-set,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_a_N,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	HLA-DOA	HGNC	ENSG00000204252				69	0	0	40	13	24.5283
MEP1A	0	genome.wustl.edu	37	6	46777187	46777187	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	6	46777187	46777187	C	T	SNP	MEP1A	ENST00000230588	human	ensembl	74_37	+1	known	missense	c.293	p.A98V	1.000	pirsf_Pept_M12A_Meprin,pfam_Peptidase_M12A,smart_Peptidase_Metallo,prints_Peptidase_M12A	pirsf_Pept_M12A_Meprin,pfam_Peptidase_M12A,pfam_MATH,pfam_MAM_dom,pfam_EG-like_dom,superfamily_TRAF-like,superfamily_ConA-like_lec_gl_sf,smart_Peptidase_Metallo,smart_MAM_dom,smart_MATH,prints_Peptidase_M12A,prints_MAM_dom,pfscan_EG-like_dom,pfscan_MATH,pfscan_MAM_dom	-	no_errors	MEP1A	HGNC	ENSG00000112818				144	1	0.689655	96	29	23.2
KHDRBS2	0	genome.wustl.edu	37	6	62757869	62757869	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	6	62757869	62757869	T	C	SNP	KHDRBS2	ENST00000281156	human	ensembl	74_37	-1	known	missense	c.250	p.R84G	1.000	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	KHDRBS2	HGNC	ENSG00000112232				113	0	0	95	24	20.1681
COL12A1	0	genome.wustl.edu	37	6	75838046	75838046	+	Silent	SNP	T	T	C			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	6	75838046	75838046	T	C	SNP	COL12A1	ENST00000322507	human	ensembl	74_37	-1	known	silent	c.6306	p.G2102	0.999	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_VWF_A,pfam_Collagen,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL12A1	HGNC	ENSG00000111799				145	0	0	124	28	18.4211
CADPS2	0	genome.wustl.edu	37	7	122033617	122033617	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	7	122033617	122033617	T	G	SNP	CADPS2	ENST00000449022	human	ensembl	74_37	-1	known	missense	c.2766	p.K922N	1.000	NULL	pfam_Ca-dep_secretion_activator,pfam_Pleckstrin_homology,superfamily_C2_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	CADPS2	HGNC	ENSG00000081803				74	0	0	62	8	11.4286
CHRM2	0	genome.wustl.edu	37	7	136700432	136700432	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	7	136700432	136700432	T	A	SNP	CHRM2	ENST00000320658	human	ensembl	74_37	+1	known	missense	c.820	p.C274S	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Musac_Ach_M2_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Musac_Ach_M2_rcpt,prints_Musac_Ach_rcpt,prints_GPCR_Rhodpsn	-	no_errors	CHRM2	HGNC	ENSG00000181072				64	0	0	57	6	9.52381
TMEM176B	0	genome.wustl.edu	37	7	150493578	150493578	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	7	150493578	150493578	A	G	SNP	TMEM176B	ENST00000326442	human	ensembl	74_37	-1	known	missense	c.80	p.I27T	1.000	NULL	pfam_CD20-like,superfamily_MFS_dom_general_subst_transpt	-	no_errors	TMEM176B	HGNC	ENSG00000106565				83	0	0	67	4	5.6338
DNAH11	0	genome.wustl.edu	37	7	21826307	21826307	+	Silent	SNP	C	C	A			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	7	21826307	21826307	C	A	SNP	DNAH11	ENST00000328843	human	ensembl	74_37	+1	known	silent	c.9684	p.A3228	0.138	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH11	HGNC	ENSG00000105877				133	0	0	134	25	15.7233
ANLN	0	genome.wustl.edu	37	7	36492149	36492149	+	Silent	SNP	T	T	C			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	7	36492149	36492149	T	C	SNP	ANLN	ENST00000265748	human	ensembl	74_37	+1	known	silent	c.3315	p.V1105	0.930	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	ANLN	HGNC	ENSG00000011426				443	1	0.225225	334	51	13.2468
ELMO1	0	genome.wustl.edu	37	7	37354471	37354471	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	7	37354471	37354471	A	C	SNP	ELMO1	ENST00000310758	human	ensembl	74_37	-1	known	missense	c.175	p.F59V	1.000	NULL	pfam_DUF3361,pfam_Engulfment_cell_motility_ELMO,superfamily_ARM-type_fold	-	no_errors	ELMO1	HGNC	ENSG00000155849				53	0	0	50	7	12.2807
NME8	0	genome.wustl.edu	37	7	37924817	37924817	+	Silent	SNP	A	A	C			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	7	37924817	37924817	A	C	SNP	NME8	ENST00000199447	human	ensembl	74_37	+1	known	silent	c.1210	p.R404	0.898	pfam_Nucleoside_diP_kinase,superfamily_Nucleoside_diP_kinase,smart_Nucleoside_diP_kinase	pfam_Nucleoside_diP_kinase,pfam_Thioredoxin_domain,superfamily_Nucleoside_diP_kinase,superfamily_Thioredoxin-like_fold,smart_Nucleoside_diP_kinase	-	no_errors	NME8	HGNC	ENSG00000086288				39	0	0	24	3	11.1111
ZNF716	0	genome.wustl.edu	37	7	57529279	57529279	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	7	57529279	57529279	A	C	SNP	ZNF716	ENST00000420713	human	ensembl	74_37	+1	known	missense	c.1112	p.K371T	0.563	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF716	HGNC	ENSG00000182111				16	0	0	19	3	13.6364
WBSCR17	0	genome.wustl.edu	37	7	70885974	70885974	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	7	70885974	70885974	A	C	SNP	WBSCR17	ENST00000333538	human	ensembl	74_37	+1	known	missense	c.845	p.N282T	1.000	pfam_Glyco_trans_2	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	WBSCR17	HGNC	ENSG00000185274				185	0	0	156	26	14.2857
RIMS2	0	genome.wustl.edu	37	8	104898091	104898091	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	8	104898091	104898091	A	C	SNP	RIMS2	ENST00000406091	human	ensembl	74_37	+1	known	missense	c.1264	p.S422R	1.000	NULL	pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_Znf_FYVE_PHD,superfamily_PDZ,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ,pfscan_Znf_FYVE-typ,pfscan_Znf_FYVE-rel	-	no_errors	RIMS2	HGNC	ENSG00000176406				85	0	0	67	18	21.1765
RIMS2	0	genome.wustl.edu	37	8	104898096	104898096	+	Silent	SNP	T	T	G			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	8	104898096	104898096	T	G	SNP	RIMS2	ENST00000406091	human	ensembl	74_37	+1	known	silent	c.1269	p.S423	0.998	NULL	pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_Znf_FYVE_PHD,superfamily_PDZ,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ,pfscan_Znf_FYVE-typ,pfscan_Znf_FYVE-rel	-	no_errors	RIMS2	HGNC	ENSG00000176406				80	0	0	71	15	17.4419
RIMS2	0	genome.wustl.edu	37	8	105260951	105260951	+	Silent	SNP	T	T	C			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	8	105260951	105260951	T	C	SNP	RIMS2	ENST00000406091	human	ensembl	74_37	+1	known	silent	c.3499	p.L1167	0.999	NULL	pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_Znf_FYVE_PHD,superfamily_PDZ,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ,pfscan_Znf_FYVE-typ,pfscan_Znf_FYVE-rel	-	no_errors	RIMS2	HGNC	ENSG00000176406				102	0	0	100	19	15.9664
LRP12	0	genome.wustl.edu	37	8	105503202	105503202	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	8	105503202	105503202	A	G	SNP	LRP12	ENST00000424843	human	ensembl	74_37	-1	known	missense	c.2222	p.L741P	1.000	NULL	pfam_CUB_dom,pfam_LDrepeatLR_classA_rpt,superfamily_CUB_dom,superfamily_LDrepeatLR_classA_rpt,smart_CUB_dom,smart_LDrepeatLR_classA_rpt,pfscan_CUB_dom,pfscan_LDrepeatLR_classA_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP12	HGNC	ENSG00000147650				112	0	0	95	22	18.8034
SOX7	0	genome.wustl.edu	37	8	10583717	10583717	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	8	10583717	10583717	C	T	SNP	SOX7	ENST00000553390	human	ensembl	74_37	-1	known	missense	c.854	p.R285H	0.758	pfam_Sox_C_TAD	pfam_Sox_C_TAD,pfam_G_patch_dom,pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_G_patch_dom,pfscan_G_patch_dom,pfscan_HMG_box_dom	-	no_errors	SOX7	HGNC	ENSG00000171056				75	0	0	65	11	14.4737
TRHR	0	genome.wustl.edu	37	8	110131681	110131681	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	8	110131681	110131681	T	G	SNP	TRHR	ENST00000311762	human	ensembl	74_37	+1	known	missense	c.1194	p.S398R	0.995	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_TRH_rcpt_1,prints_GPCR_Rhodpsn	-	no_errors	TRHR	HGNC	ENSG00000174417				72	0	0	103	6	5.50459
MSR1	0	genome.wustl.edu	37	8	16026107	16026107	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	8	16026107	16026107	A	G	SNP	MSR1	ENST00000262101	human	ensembl	74_37	-1	known	missense	c.490	p.S164P	0.067	pfam_Macro_scav_rcpt,prints_Macro_scav_rcpt	pfam_SRCR,pfam_Macro_scav_rcpt,pfam_Collagen,superfamily_Srcr_rcpt-rel,superfamily_STAT_TF_coiled-coil,smart_Srcr_rcpt-rel,prints_Macro_scav_rcpt,prints_SRCR,pfscan_SRCR	-	no_errors	MSR1	HGNC	ENSG00000038945				118	0	0	134	11	7.58621
CSMD1	0	genome.wustl.edu	37	8	2949052	2949052	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	8	2949052	2949052	T	G	SNP	CSMD1	ENST00000520002	human	ensembl	74_37	-1	known	missense	c.7274	p.K2425T	1.000	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD1	HGNC	ENSG00000183117				56	0	0	64	6	8.57143
FGFR1	0	genome.wustl.edu	37	8	38279423	38279423	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	8	38279423	38279423	C	T	SNP	FGFR1	ENST00000425967	human	ensembl	74_37	-1	known	missense	c.1066	p.V356M	1.000	pirsf_FGF_rcpt_fam,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pirsf_FGF_rcpt_fam,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	FGFR1	HGNC	ENSG00000077782				59	0	0	58	7	10.7692
POMK	0	genome.wustl.edu	37	8	42958728	42958728	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	8	42958728	42958728	G	A	SNP	POMK	ENST00000331373	human	ensembl	74_37	+1	known	missense	c.37	p.A13T	0.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,pfscan_Prot_kinase_dom	-	no_errors	POMK	HGNC	ENSG00000185900				88	0	0	135	11	7.53425
OPRK1	0	genome.wustl.edu	37	8	54142200	54142200	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	8	54142200	54142200	C	T	SNP	OPRK1	ENST00000265572	human	ensembl	74_37	-1	known	missense	c.800	p.R267H	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,prints_Opioid_rcpt,prints_Somatstn_rcpt,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srx,prints_Kappa_opi_rcpt,prints_GPCR_Rhodpsn,prints_Opioid_rcpt,prints_Neuropept_B/W_rcpt,prints_Somatstn_rcpt,prints_NPY_rcpt,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OPRK1	HGNC	ENSG00000082556				67	0	0	60	8	11.7647
OPRK1	0	genome.wustl.edu	37	8	54147490	54147490	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	8	54147490	54147490	A	C	SNP	OPRK1	ENST00000265572	human	ensembl	74_37	-1	known	missense	c.439	p.F147V	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srx,prints_GPCR_Rhodpsn,prints_Opioid_rcpt,prints_NPY_rcpt,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srx,prints_Kappa_opi_rcpt,prints_GPCR_Rhodpsn,prints_Opioid_rcpt,prints_Neuropept_B/W_rcpt,prints_Somatstn_rcpt,prints_NPY_rcpt,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OPRK1	HGNC	ENSG00000082556				48	0	0	56	11	16.4179
PREX2	0	genome.wustl.edu	37	8	69058469	69058469	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	8	69058469	69058469	A	C	SNP	PREX2	ENST00000288368	human	ensembl	74_37	+1	known	missense	c.4113	p.E1371D	1.000	NULL	pfam_DH-domain,pfam_DEP_dom,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX2	HGNC	ENSG00000046889				60	0	0	66	6	8.33333
SULF1	0	genome.wustl.edu	37	8	70536271	70536271	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	8	70536271	70536271	A	C	SNP	SULF1	ENST00000260128	human	ensembl	74_37	+1	known	missense	c.1689	p.E563D	0.999	pfam_Extracellular_sulfatase_C,superfamily_Alkaline_phosphatase_core,pirsf_Extracellular_sulfatase	pfam_Sulfatase,pfam_Extracellular_sulfatase_C,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core,pirsf_Extracellular_sulfatase	-	no_errors	SULF1	HGNC	ENSG00000137573				71	0	0	64	10	13.5135
NECAB1	0	genome.wustl.edu	37	8	91937774	91937774	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	8	91937774	91937774	C	A	SNP	NECAB1	ENST00000417640	human	ensembl	74_37	+1	known	missense	c.506	p.A169D	0.278	NULL	pfam_Antibiotic_mOase,superfamily_Dimeric_a/b-barrel,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	NECAB1	HGNC	ENSG00000123119				32	0	0	32	4	11.1111
ZNF883	0	genome.wustl.edu	37	9	115759835	115759835	+	RNA	SNP	T	T	C			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	9	115759835	115759835	T	C	SNP	ZNF883	ENST00000427548	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	ZNF883	HGNC	ENSG00000228623				54	0	0	52	5	8.77193
TLR4	0	genome.wustl.edu	37	9	120475865	120475865	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	9	120475865	120475865	T	G	SNP	TLR4	ENST00000355622	human	ensembl	74_37	+1	known	missense	c.1459	p.F487V	0.000	pirsf_Toll-like_receptor,smart_Leu-rich_rpt_typical-subtyp	pirsf_Toll-like_receptor,pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR4	HGNC	ENSG00000136869				112	0	0	98	12	10.9091
FUT7	0	genome.wustl.edu	37	9	139925609	139925609	+	Silent	SNP	C	C	T			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	9	139925609	139925609	C	T	SNP	FUT7	ENST00000314412	human	ensembl	74_37	-1	known	silent	c.582	p.A194	0.000	pfam_Glyco_trans_10	pfam_Glyco_trans_10	-	no_errors	FUT7	HGNC	ENSG00000180549				77	0	0	45	14	23.7288
BNC2	0	genome.wustl.edu	37	9	16436121	16436121	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	9	16436121	16436121	A	G	SNP	BNC2	ENST00000380672	human	ensembl	74_37	-1	known	missense	c.2071	p.F691L	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	BNC2	HGNC	ENSG00000173068				121	0	0	109	10	8.40336
CNTLN	0	genome.wustl.edu	37	9	17415802	17415802	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	9	17415802	17415802	A	G	SNP	CNTLN	ENST00000380647	human	ensembl	74_37	+1	known	missense	c.2813	p.K938R	0.990	NULL	superfamily_Prefoldin	-	no_errors	CNTLN	HGNC	ENSG00000044459				115	0	0	102	11	9.73451
KIAA2026	0	genome.wustl.edu	37	9	5924714	5924714	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	9	5924714	5924714	T	G	SNP	KIAA2026	ENST00000399933	human	ensembl	74_37	-1	novel	missense	c.2630	p.K877T	0.539	NULL	superfamily_Bromodomain	-	no_errors	KIAA2026	HGNC	ENSG00000183354				151	0	0	127	21	14.1892
SPATA31A7	0	genome.wustl.edu	37	9	65506437	65506437	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	9	65506437	65506437	C	T	SNP	SPATA31A7	ENST00000355045	human	ensembl	74_37	-1	known	missense	c.1123	p.D375N	0.033	NULL	NULL	-	no_errors	SPATA31A7	HGNC	ENSG00000234734				252	0	0	246	40	13.986
ANXA1	0	genome.wustl.edu	37	9	75781105	75781105	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	9	75781105	75781105	A	G	SNP	ANXA1	ENST00000257497	human	ensembl	74_37	+1	known	missense	c.799	p.I267V	0.974	pfam_Annexin_repeat,smart_Annexin_repeat,prints_AnnexinI	pfam_Annexin_repeat,smart_Annexin_repeat,prints_Annexin,prints_AnnexinI	-	no_errors	ANXA1	HGNC	ENSG00000135046				37	0	0	42	6	12.5
RORB	0	genome.wustl.edu	37	9	77257530	77257530	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	9	77257530	77257530	G	A	SNP	RORB	ENST00000396204	human	ensembl	74_37	+1	known	missense	c.469	p.V157I	0.997	NULL	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_ROR_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_ThyrH_rcpt,pfscan_Znf_hrmn_rcpt	-	no_errors	RORB	HGNC	ENSG00000198963				75	0	0	64	5	7.24638
COL4A6	0	genome.wustl.edu	37	X	107430498	107430498	+	Silent	SNP	T	T	C			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	X	107430498	107430498	T	C	SNP	COL4A6	ENST00000372216	human	ensembl	74_37	-1	known	silent	c.1782	p.G594	0.017	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A6	HGNC	ENSG00000197565				69	0	0	49	14	22.2222
TENM1	0	genome.wustl.edu	37	X	123615810	123615810	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	X	123615810	123615810	T	G	SNP	TENM1	ENST00000422452	human	ensembl	74_37	-1	known	missense	c.3721	p.S1241R	1.000	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,smart_EG-like_dom,pfscan_EG-like_dom,tigrfam_YD	-	no_errors	TENM1	HGNC	ENSG00000009694				65	0	0	42	13	23.6364
MAGEA10	0	genome.wustl.edu	37	X	151303021	151303021	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	X	151303021	151303021	T	C	SNP	MAGEA10	ENST00000244096	human	ensembl	74_37	-1	known	missense	c.1072	p.S358G	0.000	NULL	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEA10	HGNC	ENSG00000124260				152	0	0	88	32	26.6667
LAGE3	0	genome.wustl.edu	37	X	153706704	153706704	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	X	153706704	153706704	G	A	SNP	LAGE3	ENST00000357360	human	ensembl	74_37	-1	known	missense	c.235	p.H79Y	0.000	pfam_EKC/KEOPS_Pcc1	pfam_EKC/KEOPS_Pcc1	-	no_errors	LAGE3	HGNC	ENSG00000196976				66	0	0	38	14	26.9231
ZNF674	0	genome.wustl.edu	37	X	46359574	46359574	+	Silent	SNP	G	G	A			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	X	46359574	46359574	G	A	SNP	ZNF674	ENST00000523374	human	ensembl	74_37	-1	known	silent	c.1450	p.L484	0.006	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF674	HGNC	ENSG00000251192				38	0	0	28	11	28.2051
CXorf67	0	genome.wustl.edu	37	X	51150192	51150192	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	X	51150192	51150192	A	C	SNP	CXorf67	ENST00000342995	human	ensembl	74_37	+1	known	missense	c.324	p.E108D	0.000	NULL	NULL	-	no_errors	CXorf67	HGNC	ENSG00000187690				17	0	0	11	3	21.4286
AMER1	0	genome.wustl.edu	37	X	63410103	63410103	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	X	63410103	63410103	G	A	SNP	AMER1	ENST00000330258	human	ensembl	74_37	-1	known	missense	c.3064	p.R1022C	0.877	NULL	pfam_Uncharacterised_FAM123	-	no_errors	AMER1	HGNC	ENSG00000184675				30	0	0	23	8	25.8065
FAM46D	0	genome.wustl.edu	37	X	79698310	79698310	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	X	79698310	79698310	T	A	SNP	FAM46D	ENST00000308293	human	ensembl	74_37	+1	known	missense	c.272	p.L91H	0.780	pfam_DUF1693	pfam_DUF1693	-	no_errors	FAM46D	HGNC	ENSG00000174016				57	0	0	46	13	22.0339
PCDH11X	0	genome.wustl.edu	37	X	91131988	91131988	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	X	91131988	91131988	A	C	SNP	PCDH11X	ENST00000373094	human	ensembl	74_37	+1	known	missense	c.749	p.K250T	1.000	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH11X	HGNC	ENSG00000102290				70	0	0	53	19	26.3889
ZIC2	0	genome.wustl.edu	37	13	100635008	100635010	+	In_Frame_Del	DEL	CCA	CCA	-			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	CCA	CCA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	13	100635008	100635010	CCA	-	DEL	ZIC2	ENST00000376335	human	ensembl	74_37	+1	known	in_frame_del	c.690_692	p.H234in_frame_del	0.990:0.999:1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZIC2	HGNC	ENSG00000043355				56	0	0	60	9	13.0435
CADPS2	0	genome.wustl.edu	37	7	122033614	122033614	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6453-01A-11D-1800-08	TCGA-BR-6453-11A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b656f146-54b5-4c34-aa07-b91551223217	e317bae9-ecab-466c-958c-64901ebfbb90	7	122033614	122033614	A	-	DEL	CADPS2	ENST00000449022	human	ensembl	74_37	-1	known	frame_shift_del	c.2769	p.H924fs	1.000	NULL	pfam_Ca-dep_secretion_activator,pfam_Pleckstrin_homology,superfamily_C2_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	CADPS2	HGNC	ENSG00000081803				85	0	0	74	7	8.64198
