Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
KCNA3	0	genome.wustl.edu	37	1	111215835	111215835	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	1	111215835	111215835	C	T	SNP	KCNA3	ENST00000369769	human	ensembl	74_37	-1	known	missense	c.1597	p.E533K	1.000	NULL	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.3,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA3	HGNC	ENSG00000177272				109	0	0	65	18	21.6867
MIIP	0	genome.wustl.edu	37	1	12081808	12081808	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	1	12081808	12081808	C	G	SNP	MIIP	ENST00000235332	human	ensembl	74_37	+1	known	missense	c.25	p.Q9E	0.493	NULL	NULL	-	no_errors	MIIP	HGNC	ENSG00000116691				46	0	0	35	8	18.6047
LINGO4	0	genome.wustl.edu	37	1	151774430	151774430	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	1	151774430	151774430	C	T	SNP	LINGO4	ENST00000368820	human	ensembl	74_37	-1	known	missense	c.751	p.G251R	1.000	NULL	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Ig_V-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LINGO4	HGNC	ENSG00000213171				74	0	0	87	13	13
TCHH	0	genome.wustl.edu	37	1	152080772	152080772	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	1	152080772	152080772	G	A	SNP	TCHH	ENST00000368804	human	ensembl	74_37	-1	known	missense	c.4921	p.R1641C	0.006	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom	-	no_errors	TCHH	HGNC	ENSG00000159450				105	0	0	134	23	14.6497
HRNR	0	genome.wustl.edu	37	1	152185612	152185612	+	Silent	SNP	A	A	G			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	1	152185612	152185612	A	G	SNP	HRNR	ENST00000368801	human	ensembl	74_37	-1	known	silent	c.8493	p.F2831	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom	-	no_errors	HRNR	HGNC	ENSG00000197915				82	0	0	78	40	33.8983
HRNR	0	genome.wustl.edu	37	1	152193511	152193511	+	Silent	SNP	C	C	G			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	1	152193511	152193511	C	G	SNP	HRNR	ENST00000368801	human	ensembl	74_37	-1	known	silent	c.594	p.G198	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom	-	no_errors	HRNR	HGNC	ENSG00000197915				93	0	0	99	13	11.6071
NUP210L	0	genome.wustl.edu	37	1	154033097	154033097	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	1	154033097	154033097	T	G	SNP	NUP210L	ENST00000368559	human	ensembl	74_37	-1	known	missense	c.2769	p.E923D	1.000	NULL	pfam_Big_2,superfamily_Invasin/intimin_cell_adhesion,smart_Big_2	-	no_errors	NUP210L	HGNC	ENSG00000143552				112	0	0	125	11	8.08824
OR10X1	0	genome.wustl.edu	37	1	158549454	158549454	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	1	158549454	158549454	A	C	SNP	OR10X1	ENST00000368150	human	ensembl	74_37	-1	known	missense	c.236	p.L79R	0.994	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10X1	HGNC	ENSG00000186400				82	0	0	89	16	15.2381
ILDR2	0	genome.wustl.edu	37	1	166927077	166927077	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	1	166927077	166927077	A	G	SNP	ILDR2	ENST00000271417	human	ensembl	74_37	-1	known	missense	c.308	p.V103A	1.000	smart_Ig_sub	pfam_LISCH7,smart_Ig_sub	-	no_errors	ILDR2	HGNC	ENSG00000143195				112	0	0	119	17	12.5
SELP	0	genome.wustl.edu	37	1	169572294	169572294	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	1	169572294	169572294	G	A	SNP	SELP	ENST00000263686	human	ensembl	74_37	-1	known	missense	c.1675	p.R559C	0.746	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,pfam_C-type_lectin,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Sushi_SCR_CCP,prints_Selectin_superfamily	-	no_errors	SELP	HGNC	ENSG00000174175				89	0	0	87	17	16.3462
RASAL2	0	genome.wustl.edu	37	1	178414760	178414760	+	Silent	SNP	C	C	T			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	1	178414760	178414760	C	T	SNP	RASAL2	ENST00000367649	human	ensembl	74_37	+1	known	silent	c.1590	p.L530	0.990	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,smart_RasGAP,pfscan_RasGAP	pfam_DUF3498,pfam_RasGAP,pfam_Pleckstrin_homology,pfam_C2_dom,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,superfamily_PP1_inhibitor,smart_Pleckstrin_homology,smart_C2_dom,smart_RasGAP,pfscan_Pleckstrin_homology,pfscan_RasGAP	-	no_errors	RASAL2	HGNC	ENSG00000075391				89	0	0	94	15	13.7615
F13B	0	genome.wustl.edu	37	1	197026201	197026201	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	1	197026201	197026201	A	T	SNP	F13B	ENST00000367412	human	ensembl	74_37	-1	known	missense	c.1113	p.H371Q	0.229	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	F13B	HGNC	ENSG00000143278				71	0	0	69	13	15.8537
MDM4	0	genome.wustl.edu	37	1	204511962	204511962	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	1	204511962	204511962	C	T	SNP	MDM4	ENST00000367182	human	ensembl	74_37	+1	known	missense	c.562	p.L188F	1.000	pirsf_p53_neg-reg_MDM_2/4	pfam_SWIB_MDM2_domain,superfamily_SWIB_MDM2_domain,pirsf_p53_neg-reg_MDM_2/4,pfscan_Znf_RanBP2,pfscan_Znf_RING	-	no_errors	MDM4	HGNC	ENSG00000198625				99	0	0	90	15	14.2857
IL20	0	genome.wustl.edu	37	1	207039928	207039928	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	1	207039928	207039928	A	T	SNP	IL20	ENST00000367096	human	ensembl	74_37	+1	known	missense	c.325	p.I109F	0.981	pfam_IL-10/19/20/24/26_fam,superfamily_4_helix_cytokine-like_core,smart_IL-10/19/20/24/26_fam	pfam_IL-10/19/20/24/26_fam,superfamily_4_helix_cytokine-like_core,smart_IL-10/19/20/24/26_fam,prints_IL-20,prints_IL-24	-	no_errors	IL20	HGNC	ENSG00000162891				414	0	0	381	66	14.7651
GPR153	0	genome.wustl.edu	37	1	6311551	6311551	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	1	6311551	6311551	G	A	SNP	GPR153	ENST00000377893	human	ensembl	74_37	-1	known	missense	c.826	p.P276S	0.978	pfam_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPR153,prints_GCR_153/162	-	no_errors	GPR153	HGNC	ENSG00000158292				32	0	0	24	8	25
PTGER3	0	genome.wustl.edu	37	1	71418611	71418611	+	Silent	SNP	G	G	T			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	1	71418611	71418611	G	T	SNP	PTGER3	ENST00000356595	human	ensembl	74_37	-1	known	silent	c.1236	p.I412	0.017	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srbc,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Prostglndn_EP3_rcpt,prints_Prostanoid_rcpt,prints_EP3_rcpt_2,prints_Prostglndn_DP_rcpt,prints_GPCR_Rhodpsn,prints_Thbox_rcpt	-	no_errors	PTGER3	HGNC	ENSG00000050628				165	0	0	140	26	15.6627
PNLIPRP3	0	genome.wustl.edu	37	10	118215240	118215240	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	10	118215240	118215240	T	A	SNP	PNLIPRP3	ENST00000369230	human	ensembl	74_37	+1	known	missense	c.463	p.F155I	0.005	pfam_Lipase_N,pirsf_Lipoprotein_lipase_LIPH,prints_Lipase	pfam_Lipase_N,pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,pirsf_Lipoprotein_lipase_LIPH,prints_Lipase,prints_Lipase_panc	-	no_errors	PNLIPRP3	HGNC	ENSG00000203837				62	0	0	38	19	33.3333
AGAP10	0	genome.wustl.edu	37	10	47207813	47207813	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	10	47207813	47207813	T	C	SNP	AGAP10	ENST00000413193	human	ensembl	74_37	-1	known	missense	c.683	p.H228R	1.000	NULL	pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_Pleckstrin_homology,smart_ArfGAP,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	AGAP10	HGNC	ENSG00000204172				38	0	0	22	3	12
CYP2C9	0	genome.wustl.edu	37	10	96707655	96707655	+	Silent	SNP	T	T	C			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	10	96707655	96707655	T	C	SNP	CYP2C9	ENST00000260682	human	ensembl	74_37	+1	known	silent	c.601	p.L201	0.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP2C9	HGNC	ENSG00000138109				111	0	0	76	51	40.1575
ATM	0	genome.wustl.edu	37	11	108163407	108163407	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	11	108163407	108163407	C	T	SNP	ATM	ENST00000278616	human	ensembl	74_37	+1	known	nonsense	c.4498	p.Q1500*	0.098	superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_TAN,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATM	HGNC	ENSG00000149311				237	0	0	140	97	40.9283
SLC37A2	0	genome.wustl.edu	37	11	124949017	124949017	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	11	124949017	124949017	T	G	SNP	SLC37A2	ENST00000308074	human	ensembl	74_37	+1	known	missense	c.324	p.F108L	0.983	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC37A2	HGNC	ENSG00000134955				248	0	0	165	37	18.3168
OR5T3	0	genome.wustl.edu	37	11	56019933	56019933	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	11	56019933	56019933	C	A	SNP	OR5T3	ENST00000303059	human	ensembl	74_37	+1	known	missense	c.258	p.H86Q	0.005	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5T3	HGNC	ENSG00000172489				92	0	0	54	19	26.0274
INCENP	0	genome.wustl.edu	37	11	61898025	61898025	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	11	61898025	61898025	G	C	SNP	INCENP	ENST00000394818	human	ensembl	74_37	+1	known	missense	c.1026	p.K342N	0.005	NULL	pfam_INCENP_N,pfam_Inner_centromere_prot_ARK-bd	-	no_errors	INCENP	HGNC	ENSG00000149503				71	0	0	54	12	18.1818
SLC3A2	0	genome.wustl.edu	37	11	62648671	62648671	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	11	62648671	62648671	A	C	SNP	SLC3A2	ENST00000377892	human	ensembl	74_37	+1	known	missense	c.572	p.K191T	1.000	NULL	pfam_Glyco_hydro_13_cat_dom,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom	-	no_errors	SLC3A2	HGNC	ENSG00000168003				25	0	0	14	7	33.3333
RBM4	0	genome.wustl.edu	37	11	66410965	66410965	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	11	66410965	66410965	G	A	SNP	RBM4	ENST00000310092	human	ensembl	74_37	+1	known	missense	c.457	p.A153T	1.000	NULL	pfam_RRM_dom,pfam_Znf_CCHC,smart_RRM_dom,smart_Znf_CCHC,pfscan_Znf_CCHC,pfscan_RRM_dom	-	no_errors	RBM4	HGNC	ENSG00000173933				99	0	0	101	25	19.8413
IGHMBP2	0	genome.wustl.edu	37	11	68703977	68703977	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	11	68703977	68703977	A	G	SNP	IGHMBP2	ENST00000255078	human	ensembl	74_37	+1	known	missense	c.2029	p.S677G	0.000	NULL	pfam_R3H_ss-bd,pfam_Znf_AN1,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_AAA+_ATPase,smart_R3H_ss-bd,smart_Znf_AN1,pfscan_Znf_AN1,pfscan_R3H_ss-bd,tigrfam_DNA_helicase_put	-	no_errors	IGHMBP2	HGNC	ENSG00000132740				65	0	0	95	8	7.76699
FAT3	0	genome.wustl.edu	37	11	92534124	92534124	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	11	92534124	92534124	G	A	SNP	FAT3	ENST00000298047	human	ensembl	74_37	+1	known	missense	c.7945	p.D2649N	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323				33	0	0	28	8	22.2222
GLT8D2	0	genome.wustl.edu	37	12	104393227	104393227	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	12	104393227	104393227	A	G	SNP	GLT8D2	ENST00000360814	human	ensembl	74_37	-1	known	missense	c.350	p.V117A	1.000	pfam_Glyco_trans_8	pfam_Glyco_trans_8	-	no_errors	GLT8D2	HGNC	ENSG00000120820				139	0	0	100	23	18.6992
POP5	0	genome.wustl.edu	37	12	121018991	121018991	+	Silent	SNP	G	G	A			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	12	121018991	121018991	G	A	SNP	POP5	ENST00000357500	human	ensembl	74_37	-1	known	silent	c.90	p.S30	0.002	pfam_RNase_P/MRP_subunit,pirsf_RNase_P/MRP_POP5	pfam_RNase_P/MRP_subunit,pirsf_RNase_P/MRP_POP5	-	no_errors	POP5	HGNC	ENSG00000167272				64	0	0	59	12	16.9014
TMEM132D	0	genome.wustl.edu	37	12	129566418	129566418	+	Silent	SNP	T	T	C			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	12	129566418	129566418	T	C	SNP	TMEM132D	ENST00000422113	human	ensembl	74_37	-1	known	silent	c.1809	p.Q603	0.881	NULL	NULL	-	no_errors	TMEM132D	HGNC	ENSG00000151952				75	0	0	69	10	12.6582
EP400	0	genome.wustl.edu	37	12	132547087	132547087	+	Silent	SNP	G	G	A			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	12	132547087	132547087	G	A	SNP	EP400	ENST00000333577	human	ensembl	74_37	+1	known	silent	c.8283	p.Q2761	1.000	NULL	pfam_SNF2_N,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Homeodomain-like,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Myb-like_dom,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	EP400	HGNC	ENSG00000183495				66	0	0	41	4	8.88889
POLE	0	genome.wustl.edu	37	12	133233758	133233758	+	Silent	SNP	C	C	T			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	12	133233758	133233758	C	T	SNP	POLE	ENST00000320574	human	ensembl	74_37	-1	known	silent	c.3546	p.K1182	1.000	NULL	pfam_DNA_pol_e_suA_C,pfam_DNA-dir_DNA_pol_B_exonuc,pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_3'-5'_exonuclease_PolB-like,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B	-	no_errors	POLE	HGNC	ENSG00000177084				103	0	0	65	14	17.7215
SOX5	0	genome.wustl.edu	37	12	23757383	23757383	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	12	23757383	23757383	C	A	SNP	SOX5	ENST00000451604	human	ensembl	74_37	-1	known	missense	c.1102	p.A368S	1.000	NULL	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	SOX5	HGNC	ENSG00000134532				99	0	0	103	17	14.1667
NELL2	0	genome.wustl.edu	37	12	44926420	44926420	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	12	44926420	44926420	C	A	SNP	NELL2	ENST00000437801	human	ensembl	74_37	-1	known	missense	c.1898	p.C633F	1.000	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd_dom,pfam_VWF_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_VWC_out,smart_VWF_C,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_VWF_C	-	no_errors	NELL2	HGNC	ENSG00000184613				97	0	0	70	48	40.678
KRT73	0	genome.wustl.edu	37	12	53004496	53004496	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	12	53004496	53004496	G	A	SNP	KRT73	ENST00000305748	human	ensembl	74_37	-1	known	missense	c.1234	p.R412W	0.998	pfam_IF,superfamily_Prefoldin	pfam_IF,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT73	HGNC	ENSG00000186049				73	0	0	103	9	8.03571
ERBB3	0	genome.wustl.edu	37	12	56489534	56489534	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	12	56489534	56489534	C	A	SNP	ERBB3	ENST00000267101	human	ensembl	74_37	+1	known	missense	c.1999	p.R667S	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Furin-like_Cys-rich_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	ERBB3	HGNC	ENSG00000065361				136	0	0	87	62	41.6107
NCAPD2	0	genome.wustl.edu	37	12	6623969	6623969	+	Silent	SNP	G	G	A			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	12	6623969	6623969	G	A	SNP	NCAPD2	ENST00000315579	human	ensembl	74_37	+1	known	silent	c.870	p.L290	1.000	superfamily_ARM-type_fold,pirsf_Condensin_cplx_su1	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_Condensin_cplx_su1	-	no_errors	NCAPD2	HGNC	ENSG00000010292				128	0	0	119	21	15
FLT1	0	genome.wustl.edu	37	13	29001983	29001983	+	Silent	SNP	G	G	A			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	13	29001983	29001983	G	A	SNP	FLT1	ENST00000282397	human	ensembl	74_37	-1	known	silent	c.1182	p.D394	0.999	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Prot_kinase_dom,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_VEGFR1_rcpt	-	no_errors	FLT1	HGNC	ENSG00000102755				128	0	0	73	19	20.6522
SLC46A3	0	genome.wustl.edu	37	13	29292018	29292018	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	13	29292018	29292018	T	A	SNP	SLC46A3	ENST00000266943	human	ensembl	74_37	-1	known	missense	c.118	p.T40S	0.875	pfam_MFS	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC46A3	HGNC	ENSG00000139508				133	0	0	105	15	12.5
DGKH	0	genome.wustl.edu	37	13	42740687	42740687	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	13	42740687	42740687	C	T	SNP	DGKH	ENST00000337343	human	ensembl	74_37	+1	known	missense	c.995	p.P332L	1.000	smart_Diacylglycerol_kinase_cat_dom	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Pleckstrin_homology,pfam_SAM_2,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_SAM_type1,superfamily_SAM/pointed,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,smart_SAM,pfscan_Pleckstrin_homology,pfscan_SAM,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	DGKH	HGNC	ENSG00000102780				129	0	0	112	17	13.1783
KPNA3	0	genome.wustl.edu	37	13	50279853	50279853	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	13	50279853	50279853	G	C	SNP	KPNA3	ENST00000261667	human	ensembl	74_37	-1	known	missense	c.1276	p.Q426E	1.000	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo	pfam_Armadillo,pfam_Importin-a_IBB,pfam_HEAT,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo,pfscan_Importin-a_IBB	-	no_errors	KPNA3	HGNC	ENSG00000102753				88	0	0	97	15	13.3929
TGM1	0	genome.wustl.edu	37	14	24724611	24724611	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	14	24724611	24724611	T	A	SNP	TGM1	ENST00000206765	human	ensembl	74_37	-1	known	missense	c.1604	p.N535I	1.000	NULL	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM1	HGNC	ENSG00000092295				37	0	0	39	10	20.4082
HECTD1	0	genome.wustl.edu	37	14	31585523	31585523	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	14	31585523	31585523	T	C	SNP	HECTD1	ENST00000399332	human	ensembl	74_37	-1	known	missense	c.5537	p.Y1846C	1.000	NULL	pfam_HECT,pfam_Sad1_UNC_C,pfam_Mib_Herc2,pfam_Ankyrin_rpt,superfamily_HECT,superfamily_Ankyrin_rpt-contain_dom,superfamily_ARM-type_fold,superfamily_Galactose-bd-like,smart_Ankyrin_rpt,smart_HECT,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_HECT	-	no_errors	HECTD1	HGNC	ENSG00000092148				107	0	0	56	35	38.4615
SPTB	0	genome.wustl.edu	37	14	65252605	65252605	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	14	65252605	65252605	T	A	SNP	SPTB	ENST00000389722	human	ensembl	74_37	-1	known	missense	c.3626	p.K1209M	1.000	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_CAMSAP_CH,pfam_Pleckstrin_homology,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTB	HGNC	ENSG00000070182				242	0	0	172	54	23.8938
UNC79	0	genome.wustl.edu	37	14	94088124	94088124	+	Silent	SNP	C	C	T			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	14	94088124	94088124	C	T	SNP	UNC79	ENST00000553484	human	ensembl	74_37	+1	known	silent	c.4611	p.D1537	0.971	superfamily_ARM-type_fold	superfamily_P-loop_NTPase,superfamily_ARM-type_fold	-	no_errors	UNC79	HGNC	ENSG00000133958				88	0	0	73	13	15.1163
LYSMD4	0	genome.wustl.edu	37	15	100272076	100272076	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	15	100272076	100272076	A	G	SNP	LYSMD4	ENST00000344791	human	ensembl	74_37	-1	known	missense	c.41	p.L14P	0.000	NULL	NULL	-	no_errors	LYSMD4	HGNC	ENSG00000183060				52	0	0	68	7	9.33333
HERC2	0	genome.wustl.edu	37	15	28412927	28412927	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	15	28412927	28412927	G	A	SNP	HERC2	ENST00000261609	human	ensembl	74_37	-1	known	missense	c.10460	p.S3487L	0.999	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5-like_heme/steroid-bd,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_RCC1/BLIP-II,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5-like_heme/steroid-bd,superfamily_UBA-like,superfamily_CUB_dom,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5-like_heme/steroid-bd,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731				121	0	0	119	24	16.7832
RYR3	0	genome.wustl.edu	37	15	34111969	34111969	+	Silent	SNP	C	C	T			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	15	34111969	34111969	C	T	SNP	RYR3	ENST00000389232	human	ensembl	74_37	+1	known	silent	c.10719	p.D3573	0.828	superfamily_ARM-type_fold	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838				463	0	0	339	78	18.705
FAM214A	0	genome.wustl.edu	37	15	52970229	52970229	+	RNA	SNP	A	A	C			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	15	52970229	52970229	A	C	SNP	FAM214A	ENST00000562351	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.600	-	-	-	no_errors	FAM214A	HGNC	ENSG00000047346				113	0	0	68	20	22.7273
NEDD4	0	genome.wustl.edu	37	15	56208943	56208943	+	Silent	SNP	G	G	A			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	15	56208943	56208943	G	A	SNP	NEDD4	ENST00000508342	human	ensembl	74_37	-1	known	silent	c.87	p.S29	0.913	NULL	pfam_HECT,pfam_WW_dom,superfamily_HECT,superfamily_WW_dom,superfamily_C2_dom,smart_WW_dom,smart_HECT,pfscan_HECT,pfscan_WW_dom	-	no_errors	NEDD4	HGNC	ENSG00000069869				229	0	0	156	36	18.75
TEX9	0	genome.wustl.edu	37	15	56704540	56704540	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	15	56704540	56704540	G	C	SNP	TEX9	ENST00000352903	human	ensembl	74_37	+1	known	missense	c.869	p.S290T	0.043	NULL	NULL	-	no_errors	TEX9	HGNC	ENSG00000151575				111	0	0	76	15	16.4835
MNS1	0	genome.wustl.edu	37	15	56748664	56748664	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	15	56748664	56748664	G	A	SNP	MNS1	ENST00000260453	human	ensembl	74_37	-1	known	missense	c.281	p.A94V	0.998	NULL	NULL	-	no_errors	MNS1	HGNC	ENSG00000138587				89	0	0	59	8	11.9403
EDC3	0	genome.wustl.edu	37	15	74948184	74948184	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	15	74948184	74948184	G	C	SNP	EDC3	ENST00000315127	human	ensembl	74_37	-1	known	missense	c.710	p.P237R	0.995	NULL	pfam_YjeF_N_dom,pfam_FDF_dom,superfamily_YjeF_N_dom	-	no_errors	EDC3	HGNC	ENSG00000179151				98	0	0	127	37	22.561
LOC645752	0	genome.wustl.edu	37	15	78212095	78212095	+	RNA	SNP	C	C	A			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	15	78212095	78212095	C	A	SNP	LOC645752	ENST00000567226	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.015	-	-	-	no_errors	RP11-114H24.2	Clone_based_vega_gene	ENSG00000260776				346	0	0	355	74	17.2494
KIAA1199	0	genome.wustl.edu	37	15	81187373	81187373	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	15	81187373	81187373	T	C	SNP	KIAA1199	ENST00000220244	human	ensembl	74_37	+1	known	missense	c.1129	p.Y377H	1.000	NULL	pfam_G8_domain,superfamily_Pectin_lyase_fold/virulence	-	no_errors	KIAA1199	HGNC	ENSG00000103888				87	0	0	127	13	9.28571
ADAMTSL3	0	genome.wustl.edu	37	15	84506901	84506901	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	15	84506901	84506901	G	T	SNP	ADAMTSL3	ENST00000286744	human	ensembl	74_37	+1	known	missense	c.661	p.A221S	0.948	prints_Peptidase_M12B_ADAM-TS	pfam_Thrombospondin_1_rpt,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTSL3	HGNC	ENSG00000156218				65	0	0	114	15	11.6279
KLHL25	0	genome.wustl.edu	37	15	86311859	86311859	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	15	86311859	86311859	C	A	SNP	KLHL25	ENST00000337975	human	ensembl	74_37	-1	known	nonsense	c.1183	p.G395*	0.999	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL25	HGNC	ENSG00000183655				57	0	0	61	15	19.7368
AGBL1	0	genome.wustl.edu	37	15	87089267	87089267	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	15	87089267	87089267	A	C	SNP	AGBL1	ENST00000441037	human	ensembl	74_37	+1	known	missense	c.2582	p.K861T	1.000	pfam_Peptidase_M14	pfam_Peptidase_M14,superfamily_ARM-type_fold	-	no_errors	AGBL1	HGNC	ENSG00000166748				49	0	0	85	6	6.59341
BLM	0	genome.wustl.edu	37	15	91304081	91304081	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	15	91304081	91304081	A	G	SNP	BLM	ENST00000355112	human	ensembl	74_37	+1	known	missense	c.1478	p.N493S	0.006	NULL	pfam_RQC_domain,pfam_BDHCT,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_HRDC_dom,superfamily_P-loop_NTPase,superfamily_HRDC-like,smart_Helicase_ATP-bd,smart_Helicase_C,smart_RQC_domain,smart_HRDC_dom,pfscan_HRDC_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ	-	no_errors	BLM	HGNC	ENSG00000197299				128	0	0	189	15	7.35294
PGPEP1L	0	genome.wustl.edu	37	15	99511811	99511811	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	15	99511811	99511811	A	C	SNP	PGPEP1L	ENST00000378919	human	ensembl	74_37	-1	known	missense	c.487	p.L163V	0.981	superfamily_Peptidase_C15-like	pfam_Peptidase_C15,superfamily_Peptidase_C15-like	-	no_errors	PGPEP1L	HGNC	ENSG00000183571				37	0	0	27	5	15.625
TSC2	0	genome.wustl.edu	37	16	2134593	2134593	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	16	2134593	2134593	G	A	SNP	TSC2	ENST00000219476	human	ensembl	74_37	+1	known	missense	c.4370	p.R1457Q	1.000	NULL	pfam_Tuberin-type_domain,pfam_Tuberin_N,pfam_Rap_GAP_dom,superfamily_ARM-type_fold,pfscan_Rap_GAP_dom,prints_Tuberin	-	no_errors	TSC2	HGNC	ENSG00000103197				34	0	0	23	9	28.125
OTOA	0	genome.wustl.edu	37	16	21698841	21698841	+	Silent	SNP	G	G	A			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	16	21698841	21698841	G	A	SNP	OTOA	ENST00000286149	human	ensembl	74_37	+1	known	silent	c.507	p.Q169	0.998	NULL	NULL	-	no_errors	OTOA	HGNC	ENSG00000155719				99	0	0	80	34	29.8246
TMEM219	0	genome.wustl.edu	37	16	29979459	29979459	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	16	29979459	29979459	C	A	SNP	TMEM219	ENST00000279396	human	ensembl	74_37	+1	known	missense	c.469	p.P157T	1.000	NULL	NULL	-	no_errors	TMEM219	HGNC	ENSG00000149932				171	0	0	142	20	12.3457
MAF	0	genome.wustl.edu	37	16	79633675	79633675	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	16	79633675	79633675	A	T	SNP	MAF	ENST00000326043	human	ensembl	74_37	-1	known	missense	c.125	p.I42N	1.000	NULL	pfam_bZIP_Maf,pfam_Maf_TF_N,superfamily_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	MAF	HGNC	ENSG00000178573				71	0	0	46	10	17.8571
MYH3	0	genome.wustl.edu	37	17	10544483	10544483	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	17	10544483	10544483	C	T	SNP	MYH3	ENST00000226209	human	ensembl	74_37	-1	known	missense	c.2084	p.R695Q	0.988	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH3	HGNC	ENSG00000109063				92	0	0	57	13	18.5714
RNF112	0	genome.wustl.edu	37	17	19318451	19318451	+	Silent	SNP	C	C	T			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	17	19318451	19318451	C	T	SNP	RNF112	ENST00000461366	human	ensembl	74_37	+1	novel	silent	c.1227	p.N409	0.967	NULL	pfam_Guanylate-bd_N,superfamily_P-loop_NTPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF112	HGNC	ENSG00000128482				72	0	0	59	31	34.4444
SSH2	0	genome.wustl.edu	37	17	28004742	28004742	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	17	28004742	28004742	C	T	SNP	SSH2	ENST00000269033	human	ensembl	74_37	-1	known	missense	c.416	p.G139D	1.000	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_DEK_C,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	SSH2	HGNC	ENSG00000141298				105	0	0	112	11	8.94309
EVI2A	0	genome.wustl.edu	37	17	29645449	29645449	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	17	29645449	29645449	T	G	SNP	EVI2A	ENST00000247270	human	ensembl	74_37	-1	known	missense	c.652	p.T218P	1.000	pfam_Ectropic_vir_integratn_site_2A,pirsf_Ectropic_vir_integratn_site_2A	pfam_Ectropic_vir_integratn_site_2A,pirsf_Ectropic_vir_integratn_site_2A	-	no_errors	EVI2A	HGNC	ENSG00000126860				55	0	0	48	11	18.6441
NLE1	0	genome.wustl.edu	37	17	33464132	33464132	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	17	33464132	33464132	T	A	SNP	NLE1	ENST00000442241	human	ensembl	74_37	-1	known	missense	c.716	p.E239V	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_NLE,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep,prints_Gprotein_B	-	no_errors	NLE1	HGNC	ENSG00000073536				57	0	0	70	10	12.5
PSME3	0	genome.wustl.edu	37	17	40986840	40986840	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	17	40986840	40986840	C	A	SNP	PSME3	ENST00000293362	human	ensembl	74_37	+1	known	missense	c.190	p.L64I	1.000	pfam_Proteasome_activ_pa28_N,superfamily_Proteasome_activ_pa28	pfam_Proteasome_activ_pa28_C,pfam_Proteasome_activ_pa28_N,superfamily_Proteasome_activ_pa28	-	no_errors	PSME3	HGNC	ENSG00000131467				112	1	0.884956	72	57	44.186
KIF2B	0	genome.wustl.edu	37	17	51901650	51901650	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	17	51901650	51901650	A	C	SNP	KIF2B	ENST00000268919	human	ensembl	74_37	+1	known	missense	c.1256	p.N419T	0.999	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF2B	HGNC	ENSG00000141200				67	0	0	68	11	13.9241
ST8SIA5	0	genome.wustl.edu	37	18	44260170	44260170	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	18	44260170	44260170	C	T	SNP	ST8SIA5	ENST00000315087	human	ensembl	74_37	-1	known	nonsense	c.966	p.W322*	1.000	pfam_Glyco_trans_29,pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST8SIA5	HGNC	ENSG00000101638				122	0	0	74	27	26.7327
CDH7	0	genome.wustl.edu	37	18	63511056	63511056	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	18	63511056	63511056	T	G	SNP	CDH7	ENST00000323011	human	ensembl	74_37	+1	known	missense	c.990	p.D330E	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH7	HGNC	ENSG00000081138				74	0	0	43	19	30.6452
SALL3	0	genome.wustl.edu	37	18	76753964	76753964	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	18	76753964	76753964	C	T	SNP	SALL3	ENST00000537592	human	ensembl	74_37	+1	known	missense	c.1973	p.T658M	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SALL3	HGNC	ENSG00000256463				18	0	0	13	10	43.4783
GIPC1	0	genome.wustl.edu	37	19	14589279	14589279	+	Silent	SNP	G	G	A			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	19	14589279	14589279	G	A	SNP	GIPC1	ENST00000345425	human	ensembl	74_37	-1	known	silent	c.951	p.F317	0.992	pirsf_UCP038083_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pirsf_UCP038083_PDZ,pfscan_PDZ	-	no_errors	GIPC1	HGNC	ENSG00000123159				21	0	0	21	4	16
ZNF793	0	genome.wustl.edu	37	19	38028045	38028045	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	19	38028045	38028045	A	G	SNP	ZNF793	ENST00000445217	human	ensembl	74_37	+1	known	missense	c.485	p.K162R	0.512	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF793	HGNC	ENSG00000188227				38	0	0	63	6	8.69565
CYP2A7	0	genome.wustl.edu	37	19	41383171	41383171	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	19	41383171	41383171	A	T	SNP	CYP2A7	ENST00000301146	human	ensembl	74_37	-1	known	missense	c.1085	p.F362Y	0.158	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-I_CYP2A-like,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I_CYP2B-like	-	no_errors	CYP2A7	HGNC	ENSG00000198077				123	0	0	186	35	15.8371
PSG8	0	genome.wustl.edu	37	19	43258561	43258561	+	Silent	SNP	G	G	A			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	19	43258561	43258561	G	A	SNP	PSG8	ENST00000306511	human	ensembl	74_37	-1	known	silent	c.1167	p.S389	0.000	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	PSG8	HGNC	ENSG00000124467				347	1	0.287356	211	113	34.8765
ZNF227	0	genome.wustl.edu	37	19	44740983	44740983	+	Nonstop_Mutation	SNP	G	G	T			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	19	44740983	44740983	G	T	SNP	ZNF227	ENST00000313040	human	ensembl	74_37	+1	known	nonstop	c.2400	p.*800Y	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF227	HGNC	ENSG00000131115				41	0	0	24	9	27.2727
SLC6A16	0	genome.wustl.edu	37	19	49814483	49814483	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	19	49814483	49814483	G	T	SNP	SLC6A16	ENST00000335875	human	ensembl	74_37	-1	known	missense	c.122	p.S41Y	0.000	NULL	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	-	no_errors	SLC6A16	HGNC	ENSG00000063127				56	0	0	42	12	22.2222
TEAD2	0	genome.wustl.edu	37	19	49862699	49862699	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	19	49862699	49862699	C	T	SNP	TEAD2	ENST00000311227	human	ensembl	74_37	-1	known	missense	c.290	p.R97Q	1.000	pfam_TEA/ATTS,smart_TEA/ATTS,pirsf_TEF,pfscan_TEA/ATTS,prints_TEA/ATTS	pfam_TEA/ATTS,smart_TEA/ATTS,pirsf_TEF,pfscan_TEA/ATTS,prints_TEA/ATTS	-	no_errors	TEAD2	HGNC	ENSG00000074219				243	0	0	102	74	42.0455
LILRA2	0	genome.wustl.edu	37	19	55087526	55087526	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	19	55087526	55087526	A	G	SNP	LILRA2	ENST00000251377	human	ensembl	74_37	+1	known	missense	c.1205	p.N402S	0.000	smart_Ig_sub,smart_Ig_sub2,pirsf_A1B_glyco/leuk_Ig-like_rcpt	smart_Ig_sub,smart_Ig_sub2,pirsf_A1B_glyco/leuk_Ig-like_rcpt,pfscan_Ig-like_dom	-	no_errors	LILRA2	HGNC	ENSG00000239998				122	1	0.813008	63	24	27.5862
NLRP5	0	genome.wustl.edu	37	19	56569735	56569735	+	Nonsense_Mutation	SNP	T	T	A			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	19	56569735	56569735	T	A	SNP	NLRP5	ENST00000390649	human	ensembl	74_37	+1	known	nonsense	c.3429	p.C1143*	0.004	smart_Leu-rich_rpt_RNase_inh_sub-typ	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP5	HGNC	ENSG00000171487				50	0	0	39	8	17.0213
ZNF584	0	genome.wustl.edu	37	19	58929139	58929139	+	Silent	SNP	C	C	T			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	19	58929139	58929139	C	T	SNP	ZNF584	ENST00000306910	human	ensembl	74_37	+1	known	silent	c.1254	p.V418	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF584	HGNC	ENSG00000171574				103	0	0	70	15	17.6471
MUC16	0	genome.wustl.edu	37	19	9071727	9071727	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	19	9071727	9071727	T	G	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.15719	p.K5240T	0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				169	0	0	119	24	16.7832
MARCO	0	genome.wustl.edu	37	2	119751970	119751970	+	Silent	SNP	G	G	A			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	2	119751970	119751970	G	A	SNP	MARCO	ENST00000327097	human	ensembl	74_37	+1	known	silent	c.1437	p.G479	0.010	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR	pfam_Collagen,pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR,prints_SRCR	-	no_errors	MARCO	HGNC	ENSG00000019169				74	0	0	68	14	17.0732
GLI2	0	genome.wustl.edu	37	2	121746631	121746631	+	Silent	SNP	G	G	A			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	2	121746631	121746631	G	A	SNP	GLI2	ENST00000361492	human	ensembl	74_37	+1	known	silent	c.3141	p.A1047	0.001	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI2	HGNC	ENSG00000074047				35	0	0	23	9	28.125
XIRP2	0	genome.wustl.edu	37	2	168103997	168103997	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	2	168103997	168103997	G	A	SNP	XIRP2	ENST00000295237	human	ensembl	74_37	+1	known	missense	c.6095	p.R2032H	1.000	NULL	pfam_Actin-binding_Xin_repeat	-	no_errors	XIRP2	HGNC	ENSG00000163092				50	0	0	42	9	17.6471
HECW2	0	genome.wustl.edu	37	2	197183523	197183523	+	Silent	SNP	C	C	T			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	2	197183523	197183523	C	T	SNP	HECW2	ENST00000260983	human	ensembl	74_37	-1	known	silent	c.2091	p.S697	0.000	NULL	pfam_HECT,pfam_WW_dom,pfam_C2_dom,superfamily_HECT,superfamily_WW_dom,superfamily_C2_dom,smart_C2_dom,smart_WW_dom,smart_HECT,pfscan_HECT,pfscan_C2_dom,pfscan_WW_dom	-	no_errors	HECW2	HGNC	ENSG00000138411				36	0	0	45	5	10
GDF7	0	genome.wustl.edu	37	2	20870362	20870362	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	2	20870362	20870362	C	T	SNP	GDF7	ENST00000272224	human	ensembl	74_37	+1	known	missense	c.530	p.P177L	0.004	pfam_TGF-b_N	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C	-	no_errors	GDF7	HGNC	ENSG00000143869				15	0	0	11	3	21.4286
GPN1	0	genome.wustl.edu	37	2	27861084	27861084	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	2	27861084	27861084	T	A	SNP	GPN1	ENST00000264718	human	ensembl	74_37	+1	known	missense	c.574	p.Y192N	1.000	pfam_Uncharacterised_ATP-bd,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_Uncharacterised_ATP-bd,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	GPN1	HGNC	ENSG00000198522				54	0	0	40	10	20
NRXN1	0	genome.wustl.edu	37	2	50724814	50724814	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	2	50724814	50724814	T	A	SNP	NRXN1	ENST00000402717	human	ensembl	74_37	-1	known	missense	c.2512	p.N838Y	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN1	HGNC	ENSG00000179915				97	0	0	64	23	26.4368
CCDC85A	0	genome.wustl.edu	37	2	56420020	56420020	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	2	56420020	56420020	G	A	SNP	CCDC85A	ENST00000407595	human	ensembl	74_37	+1	known	missense	c.685	p.A229T	0.007	NULL	pfam_DUF2216_coiled-coil	-	no_errors	CCDC85A	HGNC	ENSG00000055813				42	0	0	30	6	16.6667
ANXA4	0	genome.wustl.edu	37	2	70033572	70033572	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	2	70033572	70033572	T	A	SNP	ANXA4	ENST00000394295	human	ensembl	74_37	+1	known	missense	c.248	p.V83E	0.992	pfam_Annexin_repeat,smart_Annexin_repeat,prints_Annexin,prints_AnnexinIV	pfam_Annexin_repeat,smart_Annexin_repeat,prints_Annexin,prints_AnnexinIV,prints_AnnexinV	-	no_errors	ANXA4	HGNC	ENSG00000196975				79	0	0	86	18	17.3077
KDM3A	0	genome.wustl.edu	37	2	86716717	86716717	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	2	86716717	86716717	C	G	SNP	KDM3A	ENST00000312912	human	ensembl	74_37	+1	known	missense	c.3508	p.P1170A	1.000	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	KDM3A	HGNC	ENSG00000115548				67	0	0	62	10	13.8889
KIF16B	0	genome.wustl.edu	37	20	16486769	16486769	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	20	16486769	16486769	T	G	SNP	KIF16B	ENST00000408042	human	ensembl	74_37	-1	known	missense	c.766	p.S256R	1.000	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	-	no_errors	KIF16B	HGNC	ENSG00000089177				162	0	0	143	27	15.8824
DZANK1	0	genome.wustl.edu	37	20	18429663	18429663	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	20	18429663	18429663	C	G	SNP	DZANK1	ENST00000262547	human	ensembl	74_37	-1	known	missense	c.594	p.E198D	0.835	NULL	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	DZANK1	HGNC	ENSG00000089091				130	0	0	117	17	12.6866
PHF20	0	genome.wustl.edu	37	20	34526800	34526800	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	20	34526800	34526800	C	T	SNP	PHF20	ENST00000374012	human	ensembl	74_37	+1	known	missense	c.2482	p.R828C	0.165	NULL	pfam_DUF3776,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Tudor,smart_Znf_PHD,pfscan_Znf_C2H2	-	no_errors	PHF20	HGNC	ENSG00000025293				56	0	0	83	17	17
EPB41L1	0	genome.wustl.edu	37	20	34778617	34778617	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	20	34778617	34778617	C	T	SNP	EPB41L1	ENST00000338074	human	ensembl	74_37	+1	known	nonsense	c.1198	p.Q400*	1.000	pfam_FERM-adjacent,pirsf_Band_41_protein	pfam_Band_4.1_C,pfam_FERM_PH-like_C,pfam_FERM_N,pfam_FERM_central,pfam_SAB_dom,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pirsf_Band_41_protein,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	EPB41L1	HGNC	ENSG00000088367				69	0	0	90	9	9.09091
CHD6	0	genome.wustl.edu	37	20	40049424	40049424	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	20	40049424	40049424	C	T	SNP	CHD6	ENST00000373233	human	ensembl	74_37	-1	known	missense	c.5851	p.E1951K	0.094	NULL	pfam_SNF2_N,pfam_Chromo_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_BRK_domain,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD6	HGNC	ENSG00000124177				213	0	0	269	51	15.9375
IFT52	0	genome.wustl.edu	37	20	42252656	42252656	+	Silent	SNP	G	G	A			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	20	42252656	42252656	G	A	SNP	IFT52	ENST00000373030	human	ensembl	74_37	+1	known	silent	c.894	p.L298	1.000	NULL	pfam_ABC_transp_unknown	-	no_errors	IFT52	HGNC	ENSG00000101052				360	0	0	557	44	7.32113
SLC12A5	0	genome.wustl.edu	37	20	44674590	44674590	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	20	44674590	44674590	G	A	SNP	SLC12A5	ENST00000454036	human	ensembl	74_37	+1	known	missense	c.1712	p.G571D	1.000	pfam_AA-permease/SLC12A_dom,prints_KCL_cotranspt,tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease/SLC12A_dom,prints_KCL_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A5	HGNC	ENSG00000124140				186	0	0	325	34	9.47075
FAM209A	0	genome.wustl.edu	37	20	55100041	55100041	+	Silent	SNP	A	A	G			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	20	55100041	55100041	A	G	SNP	FAM209A	ENST00000371328	human	ensembl	74_37	+1	known	silent	c.177	p.K59	0.861	NULL	NULL	-	no_errors	FAM209A	HGNC	ENSG00000124103				128	1	0.775194	204	17	7.69231
SLC17A9	0	genome.wustl.edu	37	20	61588204	61588204	+	Silent	SNP	C	C	G			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	20	61588204	61588204	C	G	SNP	SLC17A9	ENST00000370351	human	ensembl	74_37	+1	known	silent	c.147	p.V49	0.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC17A9	HGNC	ENSG00000101194				40	0	0	87	9	9.375
KRTAP13-2	0	genome.wustl.edu	37	21	31744376	31744376	+	Silent	SNP	G	G	A			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	21	31744376	31744376	G	A	SNP	KRTAP13-2	ENST00000399889	human	ensembl	74_37	-1	known	silent	c.156	p.L52	0.180	pfam_KRTAP_PMG	pfam_KRTAP_PMG	-	no_errors	KRTAP13-2	HGNC	ENSG00000182816				86	0	0	96	9	8.57143
KRTAP19-7	0	genome.wustl.edu	37	21	31933515	31933515	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	21	31933515	31933515	A	C	SNP	KRTAP19-7	ENST00000334849	human	ensembl	74_37	-1	known	missense	c.94	p.F32V	0.001	pfam_KRTAP_type6/8/16/19/20	pfam_KRTAP_type6/8/16/19/20	-	no_errors	KRTAP19-7	HGNC	ENSG00000244362				139	0	0	137	18	11.6129
DYRK1A	0	genome.wustl.edu	37	21	38845158	38845158	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	21	38845158	38845158	G	C	SNP	DYRK1A	ENST00000398960	human	ensembl	74_37	+1	known	missense	c.183	p.Q61H	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	DYRK1A	HGNC	ENSG00000157540				134	0	0	67	18	21.1765
MX1	0	genome.wustl.edu	37	21	42821220	42821220	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	21	42821220	42821220	C	T	SNP	MX1	ENST00000398598	human	ensembl	74_37	+1	known	missense	c.1430	p.T477M	0.004	pfam_Dynamin_central,superfamily_P-loop_NTPase	pfam_Dynamin_central,pfam_Dynamin_GTPase,pfam_GED,superfamily_P-loop_NTPase,smart_Dynamin_GTPase,smart_GED,prints_Dynamin_SF	-	no_errors	MX1	HGNC	ENSG00000157601				111	0	0	70	15	17.6471
MYH9	0	genome.wustl.edu	37	22	36681783	36681783	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	22	36681783	36681783	G	A	SNP	MYH9	ENST00000216181	human	ensembl	74_37	-1	known	missense	c.5195	p.A1732V	1.000	pfam_Myosin_tail	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Regulat_G_prot_signal_superfam,superfamily_Prefoldin,superfamily_Myosin_S1_N,superfamily_STAT_TF_coiled-coil,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH9	HGNC	ENSG00000100345				16	0	0	20	8	28.5714
BAIAP2L2	0	genome.wustl.edu	37	22	38482283	38482283	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	22	38482283	38482283	C	G	SNP	BAIAP2L2	ENST00000381669	human	ensembl	74_37	-1	known	missense	c.1433	p.S478T	0.997	NULL	pfam_IRSp53/MIM_homology_IMD,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	BAIAP2L2	HGNC	ENSG00000128298				32	0	0	22	13	37.1429
PARP14	0	genome.wustl.edu	37	3	122414498	122414498	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	3	122414498	122414498	T	C	SNP	PARP14	ENST00000474629	human	ensembl	74_37	+1	known	missense	c.824	p.F275S	0.274	NULL	pfam_Macro_dom,pfam_Poly(ADP-ribose)pol_cat_dom,pfam_WWE-dom,smart_Macro_dom,pfscan_Macro_dom,pfscan_WWE-dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP14	HGNC	ENSG00000173193				32	0	0	25	3	10.7143
CLSTN2	0	genome.wustl.edu	37	3	140122503	140122503	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	3	140122503	140122503	G	T	SNP	CLSTN2	ENST00000458420	human	ensembl	74_37	+1	known	nonsense	c.265	p.E89*	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CLSTN2	HGNC	ENSG00000158258				205	0	0	183	33	15.2778
MME	0	genome.wustl.edu	37	3	154856014	154856014	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	3	154856014	154856014	G	A	SNP	MME	ENST00000360490	human	ensembl	74_37	+1	known	missense	c.844	p.E282K	1.000	pfam_Peptidase_M13_N	pfam_Peptidase_M13_N,pfam_Peptidase_M13_C,prints_Peptidase_M13_C	-	no_errors	MME	HGNC	ENSG00000196549				105	0	0	72	19	20.8791
PIK3CA	0	genome.wustl.edu	37	3	178952007	178952007	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	3	178952007	178952007	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	74_37	+1	known	missense	c.3062	p.Y1021C	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879				95	0	0	52	15	22.3881
MST1R	0	genome.wustl.edu	37	3	49928023	49928023	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	3	49928023	49928023	G	C	SNP	MST1R	ENST00000296474	human	ensembl	74_37	-1	known	missense	c.3705	p.D1235E	1.000	pirsf_Tyr_kinase_HGF/MSP_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Tyr_kinase_HGF/MSP_rcpt,pfam_Semap_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_IPT,superfamily_Semap_dom,superfamily_Kinase-like_dom,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Semap_dom,pfscan_Prot_kinase_dom	-	no_errors	MST1R	HGNC	ENSG00000164078				52	0	0	33	7	17.5
FAT4	0	genome.wustl.edu	37	4	126370611	126370611	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	4	126370611	126370611	G	T	SNP	FAT4	ENST00000394329	human	ensembl	74_37	+1	known	missense	c.8440	p.A2814S	0.697	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159				93	0	0	66	16	19.5122
TENM3	0	genome.wustl.edu	37	4	183713739	183713739	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	4	183713739	183713739	G	T	SNP	TENM3	ENST00000406950	human	ensembl	74_37	+1	known	nonsense	c.5914	p.E1972*	1.000	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,superfamily_Cyt_c-like_dom,smart_EG-like_dom,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	TENM3	HGNC	ENSG00000218336				246	0	0	175	42	19.3548
STPG2	0	genome.wustl.edu	37	4	98633959	98633959	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	4	98633959	98633959	G	A	SNP	STPG2	ENST00000295268	human	ensembl	74_37	-1	known	missense	c.1211	p.A404V	0.985	NULL	NULL	-	no_errors	STPG2	HGNC	ENSG00000163116				108	0	0	95	5	5
DNAH5	0	genome.wustl.edu	37	5	13922344	13922344	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	5	13922344	13922344	C	T	SNP	DNAH5	ENST00000265104	human	ensembl	74_37	-1	known	missense	c.532	p.A178T	0.985	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139				59	0	0	44	16	26.6667
SLC6A3	0	genome.wustl.edu	37	5	1409887	1409887	+	Silent	SNP	C	C	T			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	5	1409887	1409887	C	T	SNP	SLC6A3	ENST00000270349	human	ensembl	74_37	-1	known	silent	c.1347	p.T449	0.991	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_dopamine	-	no_errors	SLC6A3	HGNC	ENSG00000142319				84	0	0	76	8	9.52381
ARAP3	0	genome.wustl.edu	37	5	141033762	141033762	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	5	141033762	141033762	C	A	SNP	ARAP3	ENST00000239440	human	ensembl	74_37	-1	known	nonsense	c.4390	p.E1464*	0.158	NULL	pfam_RhoGAP_dom,pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ras-assoc,pfam_SAM_2,pfam_SAM_type1,superfamily_Rho_GTPase_activation_prot,superfamily_SAM/pointed,smart_SAM,smart_Pleckstrin_homology,smart_ArfGAP,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SAM,pfscan_ArfGAP,pfscan_RhoGAP_dom,prints_ArfGAP	-	no_errors	ARAP3	HGNC	ENSG00000120318				116	0	0	69	20	22.4719
MARCH11	0	genome.wustl.edu	37	5	16067798	16067798	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	5	16067798	16067798	C	T	SNP	MARCH11	ENST00000332432	human	ensembl	74_37	-1	known	missense	c.991	p.E331K	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH	-	no_errors	MARCH11	HGNC	ENSG00000183654				66	0	0	52	40	43.4783
PDZD2	0	genome.wustl.edu	37	5	32089722	32089722	+	Silent	SNP	C	C	T			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	5	32089722	32089722	C	T	SNP	PDZD2	ENST00000282493	human	ensembl	74_37	+1	known	silent	c.6168	p.R2056	0.001	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PDZD2	HGNC	ENSG00000133401				139	1	0.714286	139	26	15.7576
ADCY2	0	genome.wustl.edu	37	5	7396565	7396565	+	Silent	SNP	C	C	G			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	5	7396565	7396565	C	G	SNP	ADCY2	ENST00000338316	human	ensembl	74_37	+1	known	silent	c.156	p.L52	1.000	NULL	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY2	HGNC	ENSG00000078295				64	0	0	59	11	15.7143
C5orf49	0	genome.wustl.edu	37	5	7832018	7832018	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	5	7832018	7832018	T	G	SNP	C5orf49	ENST00000399810	human	ensembl	74_37	-1	known	missense	c.389	p.K130T	1.000	NULL	NULL	-	no_errors	C5orf49	HGNC	ENSG00000215217				120	0	0	110	40	26.6667
SERINC5	0	genome.wustl.edu	37	5	79465284	79465284	+	Silent	SNP	A	A	G			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	5	79465284	79465284	A	G	SNP	SERINC5	ENST00000509193	human	ensembl	74_37	-1	known	silent	c.637	p.L213	0.985	pfam_TMS_TDE	pfam_TMS_TDE	-	no_errors	SERINC5	HGNC	ENSG00000164300				60	0	0	55	15	21.4286
ERVFRD-1	0	genome.wustl.edu	37	6	11105535	11105535	+	Silent	SNP	C	C	T			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	6	11105535	11105535	C	T	SNP	ERVFRD-1	ENST00000472091	human	ensembl	74_37	-1	known	silent	c.9	p.L3	0.518	NULL	pfam_TLV/ENV_coat_polyprotein	-	no_errors	ERVFRD-1	HGNC	ENSG00000244476				48	0	0	37	8	17.7778
NCOA7	0	genome.wustl.edu	37	6	126248844	126248844	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	6	126248844	126248844	C	G	SNP	NCOA7	ENST00000368357	human	ensembl	74_37	+1	known	missense	c.2559	p.F853L	1.000	pfam_TLDc,smart_TLDc	pfam_TLDc,pfam_LysM_dom,pfam_GRAM,smart_LysM_dom,smart_TLDc	-	no_errors	NCOA7	HGNC	ENSG00000111912				125	0	0	106	7	6.19469
RSPO3	0	genome.wustl.edu	37	6	127471646	127471646	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	6	127471646	127471646	T	A	SNP	RSPO3	ENST00000368317	human	ensembl	74_37	+1	known	missense	c.365	p.L122H	0.993	superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat	pfam_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_Thrombospondin_1_rpt,smart_Furin_repeat,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	RSPO3	HGNC	ENSG00000146374				78	0	0	42	27	39.1304
ADAT2	0	genome.wustl.edu	37	6	143749634	143749634	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	6	143749634	143749634	G	A	SNP	ADAT2	ENST00000237283	human	ensembl	74_37	-1	known	missense	c.542	p.S181L	1.000	superfamily_Cytidine_deaminase-like	pfam_CMP_dCMP_Zn-bd,superfamily_Cytidine_deaminase-like	-	no_errors	ADAT2	HGNC	ENSG00000189007				52	0	0	43	9	17.3077
SLC22A1	0	genome.wustl.edu	37	6	160560841	160560841	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	6	160560841	160560841	G	A	SNP	SLC22A1	ENST00000366963	human	ensembl	74_37	+1	known	missense	c.1218	p.M406I	0.487	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	-	no_errors	SLC22A1	HGNC	ENSG00000175003				72	0	0	63	15	19.2308
HIST1H1C	0	genome.wustl.edu	37	6	26056139	26056139	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	6	26056139	26056139	C	G	SNP	HIST1H1C	ENST00000343677	human	ensembl	74_37	-1	known	missense	c.518	p.S173T	1.000	prints_Histone_H5	pfam_Histone_H1/H5_H15,smart_Histone_H1/H5_H15,prints_Histone_H5	-	no_errors	HIST1H1C	HGNC	ENSG00000187837				235	1	0.423729	119	107	47.3451
HIST1H4E	0	genome.wustl.edu	37	6	26204985	26204985	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	6	26204985	26204985	T	A	SNP	HIST1H4E	ENST00000360441	human	ensembl	74_37	+1	known	missense	c.113	p.L38H	1.000	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H4,smart_TAF_TATA-bd,prints_Histone_H4	pfam_Histone_core_D,pfam_TAF_TATA-bd,superfamily_Histone-fold,smart_Histone_H4,smart_TAF_TATA-bd,prints_Histone_H4	-	no_errors	HIST1H4E	HGNC	ENSG00000198518				87	0	0	71	43	37.7193
PBX2	0	genome.wustl.edu	37	6	32155509	32155509	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	6	32155509	32155509	T	A	SNP	PBX2	ENST00000375050	human	ensembl	74_37	-1	known	missense	c.785	p.Y262F	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_PBX,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	PBX2	HGNC	ENSG00000204304				27	0	0	33	3	8.33333
RIPPLY2	0	genome.wustl.edu	37	6	84563444	84563444	+	Silent	SNP	C	C	T			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	6	84563444	84563444	C	T	SNP	RIPPLY2	ENST00000369689	human	ensembl	74_37	+1	known	silent	c.126	p.D42	0.003	NULL	NULL	-	no_errors	RIPPLY2	HGNC	ENSG00000203877				71	0	0	46	5	9.80392
MAGI2	0	genome.wustl.edu	37	7	77885499	77885499	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	7	77885499	77885499	A	C	SNP	MAGI2	ENST00000354212	human	ensembl	74_37	-1	known	missense	c.1808	p.L603R	1.000	superfamily_PDZ	pfam_PDZ,pfam_WW_dom,pfam_GK/Ca_channel_bsu,superfamily_PDZ,superfamily_P-loop_NTPase,superfamily_WW_dom,smart_PDZ,smart_GK/Ca_channel_bsu,smart_WW_dom,pfscan_PDZ,pfscan_WW_dom,pfscan_Guanylate_kin-like	-	no_errors	MAGI2	HGNC	ENSG00000187391				50	0	0	45	6	11.7647
ZNF804B	0	genome.wustl.edu	37	7	88963320	88963320	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	7	88963320	88963320	G	T	SNP	ZNF804B	ENST00000333190	human	ensembl	74_37	+1	known	nonsense	c.1024	p.E342*	0.995	NULL	pfam_Znf_C2H2_jaz	-	no_errors	ZNF804B	HGNC	ENSG00000182348				52	0	0	55	7	11.2903
AKAP9	0	genome.wustl.edu	37	7	91632525	91632525	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	7	91632525	91632525	A	C	SNP	AKAP9	ENST00000359028	human	ensembl	74_37	+1	known	missense	c.3330	p.E1110D	1.000	NULL	pfam_PACT_domain,superfamily_Prefoldin,superfamily_YbaB	-	no_errors	AKAP9	HGNC	ENSG00000127914				93	0	0	283	29	9.29487
TRRAP	0	genome.wustl.edu	37	7	98503872	98503872	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	7	98503872	98503872	C	T	SNP	TRRAP	ENST00000359863	human	ensembl	74_37	+1	known	missense	c.1109	p.T370I	1.000	superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	TRRAP	HGNC	ENSG00000196367				62	0	0	114	7	5.78512
TRRAP	0	genome.wustl.edu	37	7	98581821	98581821	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	7	98581821	98581821	T	A	SNP	TRRAP	ENST00000359863	human	ensembl	74_37	+1	known	missense	c.9140	p.I3047N	0.996	pfam_PIK-rel_kinase_FAT,pfscan_PIK_FAT	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	TRRAP	HGNC	ENSG00000196367				152	0	0	323	29	8.23864
RGS22	0	genome.wustl.edu	37	8	101075729	101075729	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	8	101075729	101075729	T	C	SNP	RGS22	ENST00000360863	human	ensembl	74_37	-1	known	missense	c.1267	p.K423E	0.987	superfamily_Regulat_G_prot_signal_superfam	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam	-	no_errors	RGS22	HGNC	ENSG00000132554				114	0	0	84	14	14.2857
DCAF13	0	genome.wustl.edu	37	8	104427550	104427550	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	8	104427550	104427550	G	A	SNP	DCAF13	ENST00000297579	human	ensembl	74_37	+1	known	missense	c.332	p.R111H	0.000	NULL	pfam_Sof1,pfam_WD40_repeat,pfam_TIF_beta_prop-like,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF13	HGNC	ENSG00000164934				75	0	0	60	12	16.6667
RIMS2	0	genome.wustl.edu	37	8	104709365	104709365	+	Silent	SNP	A	A	G			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	8	104709365	104709365	A	G	SNP	RIMS2	ENST00000406091	human	ensembl	74_37	+1	known	silent	c.228	p.G76	0.962	superfamily_Znf_FYVE_PHD,pfscan_Znf_FYVE-typ	pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_Znf_FYVE_PHD,superfamily_PDZ,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ,pfscan_Znf_FYVE-typ,pfscan_Znf_FYVE-rel	-	no_errors	RIMS2	HGNC	ENSG00000176406				87	0	0	69	15	17.8571
ZNF623	0	genome.wustl.edu	37	8	144732869	144732869	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	8	144732869	144732869	C	T	SNP	ZNF623	ENST00000501748	human	ensembl	74_37	+1	known	missense	c.827	p.S276L	0.946	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF623	HGNC	ENSG00000183309				93	0	0	71	4	5.33333
ADRA1A	0	genome.wustl.edu	37	8	26722075	26722075	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	8	26722075	26722075	C	T	SNP	ADRA1A	ENST00000380586	human	ensembl	74_37	-1	known	missense	c.412	p.V138I	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_ADR_fam	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_ADRA1A_rcpt,prints_GPCR_Rhodpsn,prints_ADR_fam	-	no_errors	ADRA1A	HGNC	ENSG00000120907				83	0	0	51	10	16.3934
TEX15	0	genome.wustl.edu	37	8	30701489	30701489	+	Nonsense_Mutation	SNP	A	A	C			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	8	30701489	30701489	A	C	SNP	TEX15	ENST00000256246	human	ensembl	74_37	-1	known	nonsense	c.5045	p.L1682*	0.231	NULL	NULL	-	no_errors	TEX15	HGNC	ENSG00000133863				132	0	0	81	16	16.4948
GDAP1	0	genome.wustl.edu	37	8	75262744	75262744	+	Silent	SNP	G	G	A			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	8	75262744	75262744	G	A	SNP	GDAP1	ENST00000220822	human	ensembl	74_37	+1	known	silent	c.48	p.A16	0.000	NULL	pfam_Glutathione_S-Trfase_N,pfam_GST_C,superfamily_Thioredoxin-like_fold,superfamily_Glutathione-S-Trfase_C-like	-	no_errors	GDAP1	HGNC	ENSG00000104381				23	0	0	30	8	21.0526
EPB41L4B	0	genome.wustl.edu	37	9	111947780	111947780	+	Nonsense_Mutation	SNP	T	T	A			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	9	111947780	111947780	T	A	SNP	EPB41L4B	ENST00000374566	human	ensembl	74_37	-1	known	nonsense	c.2407	p.K803*	1.000	NULL	pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	EPB41L4B	HGNC	ENSG00000095203				64	0	0	43	8	15.6863
PAPPA	0	genome.wustl.edu	37	9	118974066	118974066	+	Silent	SNP	G	G	A			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	9	118974066	118974066	G	A	SNP	PAPPA	ENST00000328252	human	ensembl	74_37	+1	known	silent	c.1773	p.E591	1.000	pfam_Peptidase_M43	pfam_Sushi_SCR_CCP,pfam_Notch_dom,pfam_Peptidase_M43,superfamily_ConA-like_lec_gl_sf,superfamily_Sushi_SCR_CCP,superfamily_Fibronectin_type3,superfamily_Notch_dom,smart_LamG-like,smart_Notch_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,tigrfam_Myxo_disulph_rpt	-	no_errors	PAPPA	HGNC	ENSG00000182752				161	0	0	126	25	16.5563
RAPGEF1	0	genome.wustl.edu	37	9	134497285	134497285	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	9	134497285	134497285	C	A	SNP	RAPGEF1	ENST00000372190	human	ensembl	74_37	-1	known	missense	c.1806	p.K602N	1.000	NULL	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RAPGEF1	HGNC	ENSG00000107263				29	0	0	24	6	20
C9orf96	0	genome.wustl.edu	37	9	136253262	136253262	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	9	136253262	136253262	A	C	SNP	C9orf96	ENST00000371957	human	ensembl	74_37	+1	known	missense	c.326	p.E109A	0.924	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	C9orf96	HGNC	ENSG00000198870				122	0	0	64	22	25.5814
FOXB2	0	genome.wustl.edu	37	9	79634960	79634960	+	Silent	SNP	C	C	T			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	9	79634960	79634960	C	T	SNP	FOXB2	ENST00000376708	human	ensembl	74_37	+1	known	silent	c.390	p.A130	0.003	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head,prints_Antifreeze_1	-	no_errors	FOXB2	HGNC	ENSG00000204612				15	0	0	12	4	25
PTPRD	0	genome.wustl.edu	37	9	8331655	8331655	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	9	8331655	8331655	T	C	SNP	PTPRD	ENST00000356435	human	ensembl	74_37	-1	known	missense	c.5461	p.I1821V	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRD	HGNC	ENSG00000153707				127	0	0	71	31	30.3922
SLC25A53	0	genome.wustl.edu	37	X	103349893	103349893	+	Silent	SNP	C	C	T			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	X	103349893	103349893	C	T	SNP	SLC25A53	ENST00000357421	human	ensembl	74_37	-1	known	silent	c.48	p.T16	0.003	NULL	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	SLC25A53	HGNC	ENSG00000176274				34	0	0	17	15	46.875
ACTRT1	0	genome.wustl.edu	37	X	127185859	127185859	+	Silent	SNP	G	G	A			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	X	127185859	127185859	G	A	SNP	ACTRT1	ENST00000371124	human	ensembl	74_37	-1	known	silent	c.327	p.T109	0.212	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,smart_Actin-related,prints_Actin-related	-	no_errors	ACTRT1	HGNC	ENSG00000123165				195	0	0	165	83	33.4677
GPR50	0	genome.wustl.edu	37	X	150349052	150349052	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	X	150349052	150349052	C	T	SNP	GPR50	ENST00000218316	human	ensembl	74_37	+1	known	missense	c.997	p.R333C	0.043	prints_Mel_rcpt_1X	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Mel_rcpt_1X,prints_GPCR_Rhodpsn,prints_Melatonin_rcpt,prints_NPY_rcpt	-	no_errors	GPR50	HGNC	ENSG00000102195				100	0	0	80	37	31.6239
F8	0	genome.wustl.edu	37	X	154176146	154176146	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	X	154176146	154176146	G	T	SNP	F8	ENST00000360256	human	ensembl	74_37	-1	known	nonsense	c.1940	p.S647*	0.694	superfamily_Cupredoxin	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	F8	HGNC	ENSG00000185010				25	0	0	19	14	42.4242
MXRA5	0	genome.wustl.edu	37	X	3227890	3227890	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	X	3227890	3227890	C	A	SNP	MXRA5	ENST00000217939	human	ensembl	74_37	-1	known	missense	c.8354	p.G2785V	0.999	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	MXRA5	HGNC	ENSG00000101825				51	0	0	33	15	31.25
ARAF	0	genome.wustl.edu	37	X	47422726	47422726	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	X	47422726	47422726	G	C	SNP	ARAF	ENST00000377045	human	ensembl	74_37	+1	known	missense	c.198	p.K66N	0.996	pfam_Raf-like_ras-bd,smart_Raf-like_ras-bd,pfscan_Raf-like_ras-bd	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Raf-like_ras-bd,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Kinase-like_dom,smart_Raf-like_ras-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Raf-like_ras-bd,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_DAG/PE-bd	-	no_errors	ARAF	HGNC	ENSG00000078061				11	0	0	18	4	18.1818
AR	0	genome.wustl.edu	37	X	66765698	66765698	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	X	66765698	66765698	A	G	SNP	AR	ENST00000374690	human	ensembl	74_37	+1	known	missense	c.710	p.K237R	1.000	pfam_Andrgn_rcpt,prints_Andrgn_rcpt	pfam_Andrgn_rcpt,pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Andrgn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	AR	HGNC	ENSG00000169083				19	0	0	13	15	53.5714
P2RY10	0	genome.wustl.edu	37	X	78216896	78216896	+	Silent	SNP	T	T	A			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	X	78216896	78216896	T	A	SNP	P2RY10	ENST00000171757	human	ensembl	74_37	+1	known	silent	c.879	p.L293	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	P2RY10	HGNC	ENSG00000078589				205	0	0	165	56	25.3394
ATM	0	genome.wustl.edu	37	11	108121510	108121511	+	Frame_Shift_Del	DEL	TC	TC	-			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	TC	TC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	11	108121510	108121511	TC	-	DEL	ATM	ENST00000278616	human	ensembl	74_37	+1	known	frame_shift_del	c.1318_1319	p.Q441fs	0.007:0.024	superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_TAN,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATM	HGNC	ENSG00000149311				126	0	0	85	39	31.4516
ACVRL1	0	genome.wustl.edu	37	12	52306272	52306272	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	12	52306272	52306272	C	-	DEL	ACVRL1	ENST00000550683	human	ensembl	74_37	+1	known	frame_shift_del	c.56	p.R21fs	0.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_TGF_beta_rcpt_GS,superfamily_Kinase-like_dom,smart_TGF_beta_rcpt_GS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_TGFB_receptor	-	no_errors	ACVRL1	HGNC	ENSG00000139567				65	0	0	35	8	18.6047
SSH2	0	genome.wustl.edu	37	17	27963708	27963709	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	17	27963708	27963709	-	G	INS	SSH2	ENST00000269033	human	ensembl	74_37	-1	known	frame_shift_ins	c.1459_1458	p.S486fs	0.999:0.970	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_DEK_C,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	SSH2	HGNC	ENSG00000141298				214	0	0	171	89	34.2308
VAV1	0	genome.wustl.edu	37	19	6828659	6828660	+	Frame_Shift_Ins	INS	-	-	AAGCG			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	19	6828659	6828660	-	AAGCG	INS	VAV1	ENST00000602142	human	ensembl	74_37	+1	known	frame_shift_ins	c.1119_1120	p.D375fs	1.000:1.000	superfamily_DH-domain	pfam_DH-domain,pfam_SH3_domain,pfam_SH3_2,pfam_CAMSAP_CH,pfam_SH2,pfam_CH-domain,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_CH-domain,superfamily_SH3_domain,smart_CH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_SH3_domain,smart_SH2,pfscan_CH-domain,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain,prints_SH3_domain,prints_SH2,prints_SM22_calponin	-	no_errors	VAV1	HGNC	ENSG00000141968				299	0	0	188	12	6
KCNN2	0	genome.wustl.edu	37	5	113822774	113822775	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-BR-6454-01A-11D-1800-08	TCGA-BR-6454-11A-01D-1800-08	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e716ee38-12c6-4cf9-aee2-1ca60ed8f8b5	02a6d96b-8aee-4512-8454-f01a984641b0	5	113822774	113822775	AG	-	DEL	KCNN2	ENST00000264773	human	ensembl	74_37	+1	known	frame_shift_del	c.1282_1283	p.R428fs	1.000:1.000	pfam_CaM-bd_dom,superfamily_CaM-bd_dom	pfam_K_chnl_Ca-activ_SK,pfam_CaM-bd_dom,pfam_2pore_dom_K_chnl_dom,superfamily_CaM-bd_dom,prints_K_chnl_Ca-activ_SK	-	no_errors	KCNN2	HGNC	ENSG00000080709				94	0	0	62	8	11.4286
