Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
NRAS	0	genome.wustl.edu	37	1	115258748	115258748	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	1	115258748	115258748	C	A	SNP	NRAS	ENST00000369535	human	ensembl	74_37	-1	known	missense	c.34	p.G12C	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	NRAS	HGNC	ENSG00000213281				132	0	0	94	50	34.7222
VWA1	0	genome.wustl.edu	37	1	1372328	1372328	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	1	1372328	1372328	G	A	SNP	VWA1	ENST00000476993	human	ensembl	74_37	+1	known	missense	c.95	p.R32Q	0.001	smart_VWF_A	pfam_VWF_A,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_VWF_A,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	VWA1	HGNC	ENSG00000179403				118	0	0	89	14	13.5922
POGZ	0	genome.wustl.edu	37	1	151396574	151396574	+	Silent	SNP	G	G	A			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	1	151396574	151396574	G	A	SNP	POGZ	ENST00000271715	human	ensembl	74_37	-1	known	silent	c.1374	p.G458	0.853	NULL	pfam_DDE_SF_endonuclease_CENPB-like,pfam_HTH_CenpB_DNA-bd_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_HTH_CenpB_DNA-bd_dom,pfscan_Znf_C2H2	-	no_errors	POGZ	HGNC	ENSG00000143442				174	0	0	103	54	34.3949
TCHH	0	genome.wustl.edu	37	1	152080964	152080964	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	1	152080964	152080964	G	A	SNP	TCHH	ENST00000368804	human	ensembl	74_37	-1	known	missense	c.4729	p.R1577C	0.008	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom	-	no_errors	TCHH	HGNC	ENSG00000159450				152	0	0	89	50	35.9712
ADORA1	0	genome.wustl.edu	37	1	203134919	203134919	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	1	203134919	203134919	G	A	SNP	ADORA1	ENST00000309502	human	ensembl	74_37	+1	known	missense	c.872	p.R291H	1.000	pfam_7TM_GPCR_olfarory/Srsx,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Adenosn_rcpt,prints_GPCR_Rhodpsn,prints_Adeno_A1_rcpt	-	no_errors	ADORA1	HGNC	ENSG00000163485				85	0	0	47	26	35.6164
OBSCN	0	genome.wustl.edu	37	1	228524806	228524806	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	1	228524806	228524806	G	A	SNP	OBSCN	ENST00000422127	human	ensembl	74_37	+1	known	missense	c.16639	p.V5547I	1.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358				67	0	0	56	20	26.3158
RYR2	0	genome.wustl.edu	37	1	237801713	237801713	+	Silent	SNP	G	G	A			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	1	237801713	237801713	G	A	SNP	RYR2	ENST00000360064	human	ensembl	74_37	+1	known	silent	c.6843	p.K2281	0.993	pfam_Ca-rel_channel	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626				268	0	0	157	79	33.4746
ARID1A	0	genome.wustl.edu	37	1	27107162	27107162	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	1	27107162	27107162	T	G	SNP	ARID1A	ENST00000324856	human	ensembl	74_37	+1	known	missense	c.6773	p.L2258R	1.000	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1A	HGNC	ENSG00000117713				118	0	0	64	54	45.7627
YRDC	0	genome.wustl.edu	37	1	38272879	38272879	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	1	38272879	38272879	C	A	SNP	YRDC	ENST00000373044	human	ensembl	74_37	-1	known	missense	c.398	p.R133L	0.739	pfam_YrdC-like_dom,superfamily_DHBP_synth_RibB-like_a/b_dom,pfscan_YrdC-like_dom,tigrfam_YrdC-like_dom	pfam_YrdC-like_dom,superfamily_DHBP_synth_RibB-like_a/b_dom,pfscan_YrdC-like_dom,tigrfam_YrdC-like_dom	-	no_errors	YRDC	HGNC	ENSG00000196449				75	0	0	46	29	38.6667
PTGER3	0	genome.wustl.edu	37	1	71478123	71478123	+	Silent	SNP	G	G	A			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	1	71478123	71478123	G	A	SNP	PTGER3	ENST00000354608	human	ensembl	74_37	-1	known	silent	c.942	p.H314	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Prostglndn_EP3_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfam_7TM_GPCR_serpentine_rcpt_Srbc,pfscan_GPCR_Rhodpsn_7TM,prints_Prostglndn_EP3_rcpt,prints_Prostanoid_rcpt,prints_EP3_rcpt_2,prints_Prostglndn_DP_rcpt,prints_GPCR_Rhodpsn,prints_Thbox_rcpt	-	no_errors	PTGER3	HGNC	ENSG00000050628				71	0	0	32	20	38.4615
EPHX4	0	genome.wustl.edu	37	1	92508453	92508453	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	1	92508453	92508453	G	T	SNP	EPHX4	ENST00000370383	human	ensembl	74_37	+1	known	nonsense	c.391	p.G131*	1.000	pfam_AB_hydrolase_1,prints_AB_hydrolase_1	pfam_AB_hydrolase_1,prints_Epox_hydrolase-like,prints_AB_hydrolase_1	-	no_errors	EPHX4	HGNC	ENSG00000172031				88	0	0	62	23	27.0588
PYROXD2	0	genome.wustl.edu	37	10	100154955	100154955	+	Silent	SNP	A	A	G			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	10	100154955	100154955	A	G	SNP	PYROXD2	ENST00000370575	human	ensembl	74_37	-1	known	silent	c.783	p.S261	1.000	NULL	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_Amino_oxidase	-	no_errors	PYROXD2	HGNC	ENSG00000119943				130	1	0.763359	40	82	67.2131
BIRC3	0	genome.wustl.edu	37	11	102195339	102195339	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	11	102195339	102195339	G	C	SNP	BIRC3	ENST00000263464	human	ensembl	74_37	+1	known	missense	c.99	p.M33I	0.971	pfam_BIR,smart_BIR,pfscan_BIR	pfam_BIR,pfam_CARD,superfamily_DEATH-like_dom,smart_BIR,smart_CARD,smart_Znf_RING,pfscan_CARD,pfscan_BIR,pfscan_Znf_RING	-	no_errors	BIRC3	HGNC	ENSG00000023445				143	0	0	151	62	29.108
TCP11L1	0	genome.wustl.edu	37	11	33106623	33106623	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	11	33106623	33106623	G	A	SNP	TCP11L1	ENST00000527661	human	ensembl	74_37	+1	known	missense	c.1745	p.R582H	0.001	NULL	pfam_Tcp11	-	no_errors	TCP11L1	HGNC	ENSG00000176148				83	0	0	87	25	22.3214
NDUFS3	0	genome.wustl.edu	37	11	47604020	47604020	+	Silent	SNP	G	G	A			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	11	47604020	47604020	G	A	SNP	NDUFS3	ENST00000263774	human	ensembl	74_37	+1	known	silent	c.627	p.E209	1.000	NULL	pfam_NADH_UbQ_OxRdtase_30kDa_su,tigrfam_NADH_DH_suC	-	no_errors	NDUFS3	HGNC	ENSG00000213619				360	1	0.277008	381	118	23.6473
CNTF	0	genome.wustl.edu	37	11	58391516	58391516	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	11	58391516	58391516	C	T	SNP	CNTF	ENST00000361987	human	ensembl	74_37	+1	known	nonsense	c.124	p.Q42*	1.000	pfam_Ciliary_neurotrophic_fac_CNTF,superfamily_4_helix_cytokine-like_core	pfam_Ciliary_neurotrophic_fac_CNTF,superfamily_4_helix_cytokine-like_core	-	no_errors	CNTF	HGNC	ENSG00000242689				133	0	0	103	35	25.3623
FGF19	0	genome.wustl.edu	37	11	69518053	69518053	+	Silent	SNP	G	G	A			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	11	69518053	69518053	G	A	SNP	FGF19	ENST00000294312	human	ensembl	74_37	-1	known	silent	c.312	p.G104	0.652	pfam_Fibroblast_GF_fam,superfamily_Cytokine_IL1-like,smart_Fibroblast_GF_fam,prints_IL-1_fam/FGF_fam	pfam_Fibroblast_GF_fam,superfamily_Cytokine_IL1-like,smart_Fibroblast_GF_fam,prints_IL-1_fam/FGF_fam,prints_Fibroblast_GF_fam	-	no_errors	FGF19	HGNC	ENSG00000162344				16	0	0	22	2	8.33333
CACNA1C	0	genome.wustl.edu	37	12	2719812	2719812	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	12	2719812	2719812	G	T	SNP	CACNA1C	ENST00000399634	human	ensembl	74_37	+1	known	nonsense	c.3664	p.E1222*	1.000	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCC_L_a1csu,prints_VDCCAlpha1,prints_VDCC_L_a1su	-	no_errors	CACNA1C	HGNC	ENSG00000151067				78	0	0	38	17	30.9091
TEAD4	0	genome.wustl.edu	37	12	3131110	3131110	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	12	3131110	3131110	C	T	SNP	TEAD4	ENST00000359864	human	ensembl	74_37	+1	known	missense	c.824	p.P275L	1.000	pfam_TEA/ATTS,pirsf_TEF	pfam_TEA/ATTS,smart_TEA/ATTS,pirsf_TEF,pfscan_TEA/ATTS,prints_TEA/ATTS	-	no_errors	TEAD4	HGNC	ENSG00000197905				189	1	0.526316	137	51	27.1277
ALG10	0	genome.wustl.edu	37	12	34179654	34179654	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	12	34179654	34179654	C	T	SNP	ALG10	ENST00000266483	human	ensembl	74_37	+1	known	missense	c.1226	p.P409L	1.000	pfam_Alg10,pirsf_Alg10	pfam_Alg10,pirsf_Alg10	-	no_errors	ALG10	HGNC	ENSG00000139133				199	0	0	155	15	8.82353
KMT2D	0	genome.wustl.edu	37	12	49424062	49424062	+	Splice_Site	SNP	C	C	T			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	12	49424062	49424062	C	T	SNP	KMT2D	ENST00000301067	human	ensembl	74_37	-1	known	splice_site	c.13999+1	e42+1	1.000	-	-	-	no_errors	KMT2D	HGNC	ENSG00000167548				10	0	0	7	4	36.3636
C12orf44	0	genome.wustl.edu	37	12	52470726	52470726	+	Silent	SNP	C	C	A			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	12	52470726	52470726	C	A	SNP	C12orf44	ENST00000336854	human	ensembl	74_37	+1	known	silent	c.409	p.R137	1.000	pfam_ATG101	pfam_ATG101	-	no_errors	C12orf44	HGNC	ENSG00000123395				63	0	0	54	3	5.26316
RBMS2	0	genome.wustl.edu	37	12	56975886	56975886	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	12	56975886	56975886	G	A	SNP	RBMS2	ENST00000262031	human	ensembl	74_37	+1	known	missense	c.823	p.A275T	0.958	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBMS2	HGNC	ENSG00000076067				191	0	0	108	58	34.9398
ALX1	0	genome.wustl.edu	37	12	85677378	85677378	+	Silent	SNP	A	A	G			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	12	85677378	85677378	A	G	SNP	ALX1	ENST00000316824	human	ensembl	74_37	+1	known	silent	c.255	p.G85	1.000	NULL	pfam_Homeobox_dom,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_OAR_dom,pfscan_Homeobox_dom	-	no_errors	ALX1	HGNC	ENSG00000180318				115	0	0	75	11	12.7907
CCDC122	0	genome.wustl.edu	37	13	44433927	44433927	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	13	44433927	44433927	A	G	SNP	CCDC122	ENST00000281508	human	ensembl	74_37	-1	known	missense	c.436	p.W146R	1.000	NULL	NULL	-	no_errors	CCDC122	HGNC	ENSG00000151773				130	0	0	95	43	31.1594
NID2	0	genome.wustl.edu	37	14	52508986	52508986	+	Silent	SNP	C	C	T			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	14	52508986	52508986	C	T	SNP	NID2	ENST00000216286	human	ensembl	74_37	-1	known	silent	c.1662	p.L554	1.000	pfam_G2_nidogen/fibulin_G2F,superfamily_GFP,smart_G2_nidogen/fibulin_G2F,pfscan_G2_nidogen/fibulin_G2F	pfam_G2_nidogen/fibulin_G2F,pfam_LDLR_classB_rpt,pfam_Nidogen_extracell_dom,pfam_Thyroglobulin_1,pfam_EGF-like_Ca-bd_dom,superfamily_GFP,superfamily_Thyroglobulin_1,smart_Nidogen_extracell_dom,smart_EG-like_dom,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd_dom,smart_Thyroglobulin_1,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDLR_classB_rpt,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thyroglobulin_1	-	no_errors	NID2	HGNC	ENSG00000087303				215	1	0.462963	138	57	29.2308
MTHFD1	0	genome.wustl.edu	37	14	64894054	64894054	+	Splice_Site	SNP	G	G	C			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	14	64894054	64894054	G	C	SNP	MTHFD1	ENST00000216605	human	ensembl	74_37	+1	known	splice_site	c.1128-1	e12-1	1.000	-	-	-	no_errors	MTHFD1	HGNC	ENSG00000100714				65	0	0	45	27	37.5
CYP19A1	0	genome.wustl.edu	37	15	51503068	51503068	+	Silent	SNP	C	C	T			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	15	51503068	51503068	C	T	SNP	CYP19A1	ENST00000260433	human	ensembl	74_37	-1	known	silent	c.1449	p.E483	0.793	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP19A1	HGNC	ENSG00000137869				126	0	0	50	78	60.9375
ISLR	0	genome.wustl.edu	37	15	74467619	74467619	+	Silent	SNP	C	C	T			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	15	74467619	74467619	C	T	SNP	ISLR	ENST00000249842	human	ensembl	74_37	+1	known	silent	c.420	p.D140	0.872	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_Ig_I-set,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	ISLR	HGNC	ENSG00000129009				44	0	0	38	5	11.6279
MEIOB	0	genome.wustl.edu	37	16	1891975	1891975	+	Splice_Site	SNP	C	C	T			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	16	1891975	1891975	C	T	SNP	MEIOB	ENST00000325962	human	ensembl	74_37	-1	known	splice_site	c.881-1	e10-1	1.000	-	-	-	no_errors	MEIOB	HGNC	ENSG00000162039				69	0	0	63	25	28.4091
ITPRIPL2	0	genome.wustl.edu	37	16	19126204	19126204	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	16	19126204	19126204	G	A	SNP	ITPRIPL2	ENST00000381440	human	ensembl	74_37	+1	known	missense	c.421	p.G141S	0.993	NULL	NULL	-	no_errors	ITPRIPL2	HGNC	ENSG00000205730				16	0	0	11	4	26.6667
TUFM	0	genome.wustl.edu	37	16	28855126	28855126	+	Silent	SNP	G	G	A			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	16	28855126	28855126	G	A	SNP	TUFM	ENST00000313511	human	ensembl	74_37	-1	known	silent	c.1125	p.S375	0.997	pfam_Transl_elong_EFTu/EF1A_C,superfamily_Transl_elong_EF1A/Init_IF2_C,tigrfam_Transl_elong_EFTu/EF1A_bac/org	pfam_EF_GTP-bd_dom,pfam_Transl_elong_EFTu/EF1A_C,pfam_Transl_elong_EFTu/EF1A_2,superfamily_P-loop_NTPase,superfamily_Transl_elong_EF1A/Init_IF2_C,superfamily_Transl_B-barrel,prints_EF_GTP-bd_dom,tigrfam_Transl_elong_EFTu/EF1A_bac/org	-	no_errors	TUFM	HGNC	ENSG00000178952				48	0	0	39	15	27.7778
HYDIN	0	genome.wustl.edu	37	16	70908761	70908761	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	16	70908761	70908761	G	A	SNP	HYDIN	ENST00000393567	human	ensembl	74_37	-1	putative	missense	c.10619	p.A3540V	0.998	NULL	superfamily_P-loop_NTPase,superfamily_PapD-like	-	no_errors	HYDIN	HGNC	ENSG00000157423				34	0	0	27	17	38.6364
FA2H	0	genome.wustl.edu	37	16	74750315	74750315	+	Silent	SNP	C	C	A			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	16	74750315	74750315	C	A	SNP	FA2H	ENST00000219368	human	ensembl	74_37	-1	known	silent	c.969	p.P323	0.031	pfam_Fatty_acid_hydroxylase,pirsf_Ino-phos-ceramide-B_Hydrxlase	pfam_Fatty_acid_hydroxylase,pfam_Cyt_B5-like_heme/steroid-bd,superfamily_Cyt_B5-like_heme/steroid-bd,pirsf_Ino-phos-ceramide-B_Hydrxlase,pfscan_Cyt_B5-like_heme/steroid-bd,prints_Cyt_B5-like_heme/steroid-bd	-	no_errors	FA2H	HGNC	ENSG00000103089				41	0	0	42	4	8.69565
MYH4	0	genome.wustl.edu	37	17	10362660	10362660	+	Silent	SNP	G	G	A			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	17	10362660	10362660	G	A	SNP	MYH4	ENST00000255381	human	ensembl	74_37	-1	known	silent	c.1495	p.L499	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH4	HGNC	ENSG00000264424				185	0	0	93	46	33.0935
FBXW10	0	genome.wustl.edu	37	17	18675802	18675802	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	17	18675802	18675802	C	T	SNP	FBXW10	ENST00000308799	human	ensembl	74_37	+1	known	missense	c.2171	p.T724M	0.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_F-box_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	FBXW10	HGNC	ENSG00000171931				261	0	0	167	83	33.2
OVCA2	0	genome.wustl.edu	37	17	1945948	1945948	+	Silent	SNP	G	G	A			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	17	1945948	1945948	G	A	SNP	OVCA2	ENST00000572195	human	ensembl	74_37	+1	known	silent	c.234	p.Q78	0.151	pfam_Serine_hydrolase_FSH	pfam_Serine_hydrolase_FSH,pfam_PLipase/COase/thioEstase	-	no_errors	OVCA2	HGNC	ENSG00000262664				105	1	0.943396	55	25	31.25
SLC4A1	0	genome.wustl.edu	37	17	42338119	42338119	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	17	42338119	42338119	G	A	SNP	SLC4A1	ENST00000262418	human	ensembl	74_37	-1	known	missense	c.233	p.A78V	0.290	superfamily_PTrfase/Anion_transptr,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Anion_exchange,prints_Anion_exchange_1,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A1	HGNC	ENSG00000004939				71	0	0	33	23	41.0714
ZMYND15	0	genome.wustl.edu	37	17	4646694	4646694	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	17	4646694	4646694	C	T	SNP	ZMYND15	ENST00000433935	human	ensembl	74_37	+1	known	missense	c.1241	p.P414L	0.712	NULL	pfam_Znf_MYND,pfscan_Znf_MYND	-	no_errors	ZMYND15	HGNC	ENSG00000141497				224	0	0	151	55	26.699
DGKE	0	genome.wustl.edu	37	17	54912541	54912541	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	17	54912541	54912541	C	T	SNP	DGKE	ENST00000284061	human	ensembl	74_37	+1	known	missense	c.385	p.R129W	0.999	pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_Kinase_C-like_PE/DAG-bd	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	DGKE	HGNC	ENSG00000153933				65	0	0	52	26	33.3333
BAHCC1	0	genome.wustl.edu	37	17	79428363	79428363	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	17	79428363	79428363	C	T	SNP	BAHCC1	ENST00000307745	human	ensembl	74_37	+1	known	missense	c.6674	p.A2225V	0.999	NULL	pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	-	no_errors	RP11-1055B8.7	Clone_based_vega_gene	ENSG00000171282				15	0	0	12	5	29.4118
LOC644669	0	genome.wustl.edu	37	18	15323276	15323276	+	RNA	SNP	A	A	T			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	18	15323276	15323276	A	T	SNP	LOC644669	ENST00000455308	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.029	-	-	-	no_errors	AP005901.1	Clone_based_vega_gene	ENSG00000215512				11	0	0	9	4	30.7692
EPB41L3	0	genome.wustl.edu	37	18	5398077	5398077	+	Silent	SNP	C	C	T			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	18	5398077	5398077	C	T	SNP	EPB41L3	ENST00000341928	human	ensembl	74_37	-1	known	silent	c.2415	p.A805	0.434	pirsf_Band_41_protein	pirsf_Band_41_protein,pfam_Band_4.1_C,pfam_SAB_dom,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	EPB41L3	HGNC	ENSG00000082397				330	0	0	205	108	34.5048
MBP	0	genome.wustl.edu	37	18	74700441	74700441	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	18	74700441	74700441	C	T	SNP	MBP	ENST00000397869	human	ensembl	74_37	-1	novel	missense	c.361	p.E121K	0.010	pfam_Myelin_BP	pfam_Myelin_BP,prints_Myelin_BP	-	no_errors	MBP	HGNC	ENSG00000197971				69	0	0	41	30	42.2535
CYP4F2	0	genome.wustl.edu	37	19	15989736	15989736	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	19	15989736	15989736	C	T	SNP	CYP4F2	ENST00000221700	human	ensembl	74_37	-1	known	missense	c.1408	p.G470R	1.000	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II	-	no_errors	CYP4F2	HGNC	ENSG00000186115				42	0	0	44	3	6.38298
LSM4	0	genome.wustl.edu	37	19	18420552	18420552	+	Silent	SNP	G	G	A			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	19	18420552	18420552	G	A	SNP	LSM4	ENST00000593829	human	ensembl	74_37	-1	known	silent	c.264	p.R88	0.043	superfamily_LSM_dom	pfam_Ribonucl_LSM,superfamily_LSM_dom,smart_Ribonucl_LSM_euk/arc	-	no_errors	LSM4	HGNC	ENSG00000130520				59	0	0	26	17	39.5349
MED29	0	genome.wustl.edu	37	19	39882040	39882040	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	19	39882040	39882040	T	C	SNP	MED29	ENST00000315588	human	ensembl	74_37	+1	known	missense	c.41	p.L14P	0.971	NULL	pfam_Mediator_Med29_met	-	no_errors	MED29	HGNC	ENSG00000063322				41	0	0	16	6	27.2727
PHLDB3	0	genome.wustl.edu	37	19	43990419	43990419	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	19	43990419	43990419	G	A	SNP	PHLDB3	ENST00000292140	human	ensembl	74_37	-1	known	missense	c.1484	p.T495M	0.979	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PHLDB3	HGNC	ENSG00000176531				41	0	0	22	4	15.3846
LIN7B	0	genome.wustl.edu	37	19	49619588	49619588	+	Silent	SNP	G	G	A			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	19	49619588	49619588	G	A	SNP	LIN7B	ENST00000221459	human	ensembl	74_37	+1	known	silent	c.297	p.T99	0.751	pfam_PDZ,superfamily_PDZ,pirsf_Lin-7_homologue,pfscan_PDZ	pfam_PDZ,pfam_L27_C,superfamily_PDZ,smart_L27,smart_PDZ,pirsf_Lin-7_homologue,pfscan_L27,pfscan_PDZ	-	no_errors	LIN7B	HGNC	ENSG00000104863				51	0	0	36	16	30.7692
ZNF610	0	genome.wustl.edu	37	19	52857558	52857558	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	19	52857558	52857558	C	T	SNP	ZNF610	ENST00000321287	human	ensembl	74_37	+1	known	missense	c.245	p.P82L	0.003	smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF610	HGNC	ENSG00000167554				93	0	0	52	19	26.7606
PSD4	0	genome.wustl.edu	37	2	113940394	113940394	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	2	113940394	113940394	G	T	SNP	PSD4	ENST00000245796	human	ensembl	74_37	+1	known	missense	c.361	p.A121S	0.009	NULL	pfam_Sec7_dom,pfam_Pleckstrin_homology,superfamily_Sec7_dom,smart_Sec7_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Sec7_dom,prints_PH_dom-spectrin-type	-	no_errors	PSD4	HGNC	ENSG00000125637				68	0	0	52	22	29.7297
GREB1	0	genome.wustl.edu	37	2	11750964	11750964	+	Silent	SNP	G	G	A			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	2	11750964	11750964	G	A	SNP	GREB1	ENST00000234142	human	ensembl	74_37	+1	known	silent	c.2817	p.P939	0.003	NULL	superfamily_P-loop_NTPase	-	no_errors	GREB1	HGNC	ENSG00000196208				53	0	0	35	18	33.9623
WDSUB1	0	genome.wustl.edu	37	2	160132102	160132102	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	2	160132102	160132102	C	A	SNP	WDSUB1	ENST00000359774	human	ensembl	74_37	-1	known	missense	c.631	p.D211Y	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_Ubox_domain,pfam_SAM_2,pfam_SAM_type1,pfam_Pointed_dom,superfamily_WD40_repeat_dom,superfamily_SAM/pointed,smart_WD40_repeat,smart_SAM,smart_Ubox_domain,pfscan_SAM,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDSUB1	HGNC	ENSG00000196151				190	0	0	121	82	40.3941
PXDN	0	genome.wustl.edu	37	2	1653281	1653281	+	Silent	SNP	G	G	A			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	2	1653281	1653281	G	A	SNP	PXDN	ENST00000252804	human	ensembl	74_37	-1	known	silent	c.2271	p.G757	0.057	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like_dom	-	no_errors	PXDN	HGNC	ENSG00000130508				192	0	0	110	52	32.0988
MYO3B	0	genome.wustl.edu	37	2	171371472	171371472	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	2	171371472	171371472	G	A	SNP	MYO3B	ENST00000334231	human	ensembl	74_37	+1	known	missense	c.3439	p.A1147T	0.000	NULL	pfam_Myosin_head_motor_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_Prot_kinase_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO3B	HGNC	ENSG00000071909				67	0	0	49	21	30
TTN	0	genome.wustl.edu	37	2	179454415	179454415	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	2	179454415	179454415	A	T	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.54333	p.D18111E	0.992	pfam_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				232	1	0.429185	195	74	27.5093
ZDBF2	0	genome.wustl.edu	37	2	207172945	207172945	+	Silent	SNP	G	G	A			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	2	207172945	207172945	G	A	SNP	ZDBF2	ENST00000374423	human	ensembl	74_37	+1	known	silent	c.3693	p.T1231	0.034	NULL	pfam_Znf_DBF,smart_Znf_DBF	-	no_errors	ZDBF2	HGNC	ENSG00000204186				67	0	0	36	18	33.3333
NYAP2	0	genome.wustl.edu	37	2	226491770	226491770	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	2	226491770	226491770	A	C	SNP	NYAP2	ENST00000272907	human	ensembl	74_37	+1	known	missense	c.1756	p.T586P	0.704	NULL	NULL	-	no_errors	NYAP2	HGNC	ENSG00000144460				9	0	0	9	8	47.0588
C2orf57	0	genome.wustl.edu	37	2	232458738	232458738	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	2	232458738	232458738	G	A	SNP	C2orf57	ENST00000313965	human	ensembl	74_37	+1	known	missense	c.1076	p.R359H	0.002	NULL	NULL	-	no_errors	C2orf57	HGNC	ENSG00000177673				86	0	0	62	18	22.5
GPR35	0	genome.wustl.edu	37	2	241569891	241569891	+	Silent	SNP	G	G	A			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	2	241569891	241569891	G	A	SNP	GPR35	ENST00000438013	human	ensembl	74_37	+1	known	silent	c.615	p.A205	0.001	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR35	HGNC	ENSG00000178623				99	0	0	91	7	7.14286
ACTG2	0	genome.wustl.edu	37	2	74143812	74143812	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	2	74143812	74143812	G	A	SNP	ACTG2	ENST00000345517	human	ensembl	74_37	+1	known	missense	c.907	p.G303S	1.000	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,smart_Actin-related,prints_Actin-related	-	no_errors	ACTG2	HGNC	ENSG00000163017				53	0	0	46	18	28.125
CTNNA2	0	genome.wustl.edu	37	2	79878715	79878715	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	2	79878715	79878715	A	T	SNP	CTNNA2	ENST00000361291	human	ensembl	74_37	+1	known	missense	c.135	p.K45N	1.000	prints_Alpha_catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin,prints_Vinculin	-	no_errors	CTNNA2	HGNC	ENSG00000066032				123	0	0	70	34	32.6923
FRG1B	0	genome.wustl.edu	37	20	29614328	29614328	+	Splice_Site	SNP	G	G	A			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	20	29614328	29614328	G	A	SNP	FRG1B	ENST00000278882	human	ensembl	74_37	+1	known	splice_site	c.1+1	e0+1	0.990	-	-	-	no_errors	FRG1B	HGNC	ENSG00000149531				44	0	0	46	4	8
BPI	0	genome.wustl.edu	37	20	36932707	36932707	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	20	36932707	36932707	G	A	SNP	BPI	ENST00000262865	human	ensembl	74_37	+1	known	missense	c.94	p.V32I	0.258	superfamily_Bactericidal_perm-incr_a/b_dom	pfam_Lipid-bd_serum_glycop_C,pfam_Lipid-bd_serum_glycop_N,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_N,smart_Lipid-bd_serum_glycop_C	-	no_errors	BPI	HGNC	ENSG00000101425				79	0	0	70	24	25.5319
ARFGEF2	0	genome.wustl.edu	37	20	47589805	47589805	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	20	47589805	47589805	G	A	SNP	ARFGEF2	ENST00000371917	human	ensembl	74_37	+1	known	missense	c.1649	p.G550E	1.000	superfamily_ARM-type_fold	pfam_Sec7_dom,pfam_DUF1981_Sec7_assoc,superfamily_Sec7_dom,superfamily_ARM-type_fold,smart_Sec7_dom,pfscan_Sec7_dom	-	no_errors	ARFGEF2	HGNC	ENSG00000124198				56	0	0	38	11	22.449
CLDN14	0	genome.wustl.edu	37	21	37833744	37833744	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	21	37833744	37833744	T	C	SNP	CLDN14	ENST00000342108	human	ensembl	74_37	-1	known	missense	c.250	p.M84V	1.000	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin,prints_Claudin2	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin14,prints_Claudin,prints_Claudin2	-	no_errors	CLDN14	HGNC	ENSG00000159261				79	0	0	41	15	26.7857
LSS	0	genome.wustl.edu	37	21	47636354	47636354	+	Silent	SNP	G	G	A			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	21	47636354	47636354	G	A	SNP	LSS	ENST00000356396	human	ensembl	74_37	-1	known	silent	c.732	p.Y244	0.661	superfamily_Terpenoid_cyclase/PrenylTrfase,tigrfam_Squalene_cyclase	pfam_Prenyltrans,superfamily_Terpenoid_cyclase/PrenylTrfase,tigrfam_Squalene_cyclase	-	no_errors	LSS	HGNC	ENSG00000160285				71	0	0	46	15	24.5902
POLR2F	0	genome.wustl.edu	37	22	38352790	38352790	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	22	38352790	38352790	G	A	SNP	POLR2F	ENST00000442738	human	ensembl	74_37	+1	known	missense	c.31	p.D11N	0.897	superfamily_Pol_omega/K/RPB6	pfam_Pol_omega/K/RPB6,superfamily_Pol_omega/K/RPB6	-	no_errors	POLR2F	HGNC	ENSG00000100142				83	0	0	71	27	27.551
CDPF1	0	genome.wustl.edu	37	22	46640993	46640993	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	22	46640993	46640993	G	A	SNP	CDPF1	ENST00000314567	human	ensembl	74_37	-1	novel	missense	c.368	p.T123M	0.000	NULL	pfam_Cys-rich_DPF,prints_Cys-rich_DPF	-	no_errors	CDPF1	HGNC	ENSG00000205643				100	0	0	75	25	25
TUBGCP6	0	genome.wustl.edu	37	22	50682244	50682244	+	Silent	SNP	G	G	A			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	22	50682244	50682244	G	A	SNP	TUBGCP6	ENST00000248846	human	ensembl	74_37	-1	known	silent	c.645	p.F215	0.966	NULL	pfam_TUBGCP	-	no_errors	TUBGCP6	HGNC	ENSG00000128159				46	0	0	29	12	29.2683
STXBP5L	0	genome.wustl.edu	37	3	121100283	121100283	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	3	121100283	121100283	G	A	SNP	STXBP5L	ENST00000273666	human	ensembl	74_37	+1	known	missense	c.2563	p.V855I	1.000	pfam_Lgl_C_dom	pfam_LLGL2,pfam_WD40_repeat,pfam_Lgl_C_dom,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,pfscan_Synaptobrevin,prints_Lethal2_giant	-	no_errors	STXBP5L	HGNC	ENSG00000145087				184	0	0	155	65	29.5455
ISY1	0	genome.wustl.edu	37	3	128848873	128848873	+	RNA	SNP	T	T	C			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	3	128848873	128848873	T	C	SNP	ISY1	ENST00000471497	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ISY1	HGNC	ENSG00000240682				50	0	0	36	5	12.1951
EFCAB12	0	genome.wustl.edu	37	3	129140548	129140548	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	3	129140548	129140548	A	T	SNP	EFCAB12	ENST00000326085	human	ensembl	74_37	-1	known	missense	c.148	p.F50I	0.494	NULL	pfscan_EF_hand_dom	-	no_errors	EFCAB12	HGNC	ENSG00000172771				39	0	0	21	12	36.3636
NCK1	0	genome.wustl.edu	37	3	136664893	136664893	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	3	136664893	136664893	G	A	SNP	NCK1	ENST00000288986	human	ensembl	74_37	+1	known	missense	c.695	p.C232Y	1.000	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pirsf_Cytoplasmic_NCK,pfscan_SH3_domain	pfam_SH3_domain,pfam_SH3_2,pfam_SH2,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,pirsf_Cytoplasmic_NCK,pfscan_SH2,pfscan_SH3_domain,prints_SH2,prints_SH3_domain	-	no_errors	NCK1	HGNC	ENSG00000158092				110	0	0	73	38	34.2342
ZBTB38	0	genome.wustl.edu	37	3	141164795	141164795	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	3	141164795	141164795	G	A	SNP	ZBTB38	ENST00000321464	human	ensembl	74_37	+1	known	missense	c.3568	p.G1190S	0.000	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB38	HGNC	ENSG00000177311				158	0	0	104	21	16.8
PIK3CA	0	genome.wustl.edu	37	3	178927980	178927980	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	3	178927980	178927980	T	C	SNP	PIK3CA	ENST00000263967	human	ensembl	74_37	+1	known	missense	c.1258	p.C420R	1.000	pfam_PI3K_C2_dom,superfamily_C2_dom,smart_PI3K_C2_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879				87	0	0	65	26	28.5714
GOLGA4	0	genome.wustl.edu	37	3	37365781	37365781	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	3	37365781	37365781	G	A	SNP	GOLGA4	ENST00000361924	human	ensembl	74_37	+1	known	missense	c.2404	p.V802I	0.000	superfamily_tRNA-bd_arm	pfam_GRIP,superfamily_GRIP,superfamily_tRNA-bd_arm,superfamily_t-SNARE,superfamily_Prefoldin,smart_GRIP,pfscan_GRIP	-	no_errors	GOLGA4	HGNC	ENSG00000144674				124	0	0	89	34	27.6423
SLC38A3	0	genome.wustl.edu	37	3	50254855	50254855	+	RNA	SNP	G	G	A			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	3	50254855	50254855	G	A	SNP	SLC38A3	ENST00000414604	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SLC38A3	HGNC	ENSG00000188338				19	0	0	24	9	27.2727
DNAH1	0	genome.wustl.edu	37	3	52380535	52380535	+	Silent	SNP	C	C	T			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	3	52380535	52380535	C	T	SNP	DNAH1	ENST00000420323	human	ensembl	74_37	+1	known	silent	c.1704	p.A568	0.928	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase	-	no_errors	DNAH1	HGNC	ENSG00000114841				32	0	0	20	6	23.0769
DNAH1	0	genome.wustl.edu	37	3	52417495	52417495	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	3	52417495	52417495	G	A	SNP	DNAH1	ENST00000420323	human	ensembl	74_37	+1	known	missense	c.8035	p.V2679I	0.000	superfamily_P-loop_NTPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase	-	no_errors	DNAH1	HGNC	ENSG00000114841				33	0	0	17	7	29.1667
DNAH1	0	genome.wustl.edu	37	3	52426895	52426895	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	3	52426895	52426895	G	A	SNP	DNAH1	ENST00000420323	human	ensembl	74_37	+1	known	missense	c.10328	p.R3443H	1.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase	-	no_errors	DNAH1	HGNC	ENSG00000114841				171	0	0	81	41	33.6066
C4orf33	0	genome.wustl.edu	37	4	130030790	130030790	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	4	130030790	130030790	C	G	SNP	C4orf33	ENST00000281146	human	ensembl	74_37	+1	known	missense	c.457	p.P153A	1.000	NULL	NULL	-	no_errors	C4orf33	HGNC	ENSG00000151470				50	0	0	39	17	30.3571
NR3C2	0	genome.wustl.edu	37	4	149041319	149041319	+	Silent	SNP	T	T	C			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	4	149041319	149041319	T	C	SNP	NR3C2	ENST00000355292	human	ensembl	74_37	-1	known	silent	c.2643	p.L881	0.840	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	NR3C2	HGNC	ENSG00000151623				117	0	0	69	19	21.5909
KCTD8	0	genome.wustl.edu	37	4	44449880	44449880	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	4	44449880	44449880	G	A	SNP	KCTD8	ENST00000360029	human	ensembl	74_37	-1	known	missense	c.661	p.R221C	1.000	NULL	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	-	no_errors	KCTD8	HGNC	ENSG00000183783				10	0	0	5	4	44.4444
YTHDC2	0	genome.wustl.edu	37	5	112888990	112888990	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	5	112888990	112888990	G	A	SNP	YTHDC2	ENST00000161863	human	ensembl	74_37	+1	known	missense	c.1801	p.D601N	1.000	superfamily_P-loop_NTPase	pfam_YTH_domain,pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_DUF1605,pfam_R3H_ss-bd,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_R3H_ss-bd,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_R3H_ss-bd,pfscan_YTH_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	YTHDC2	HGNC	ENSG00000047188				46	0	0	21	9	30
P4HA2	0	genome.wustl.edu	37	5	131552925	131552925	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	5	131552925	131552925	G	A	SNP	P4HA2	ENST00000166534	human	ensembl	74_37	-1	known	missense	c.296	p.A99V	0.857	pfam_Pro_4_hyd_alph_N	pfam_Pro_4_hyd_alph_N,pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	P4HA2	HGNC	ENSG00000072682				104	0	0	62	34	35.4167
BRD8	0	genome.wustl.edu	37	5	137475855	137475855	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	5	137475855	137475855	C	T	SNP	BRD8	ENST00000254900	human	ensembl	74_37	-1	known	missense	c.3616	p.V1206I	1.000	smart_Bromodomain	pfam_Bromodomain,superfamily_Bromodomain,superfamily_Peptidase_M20_dimer,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRD8	HGNC	ENSG00000112983				103	0	0	63	30	32.2581
PCDHB8	0	genome.wustl.edu	37	5	140559781	140559781	+	Silent	SNP	G	G	A			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	5	140559781	140559781	G	A	SNP	PCDHB8	ENST00000239444	human	ensembl	74_37	+1	known	silent	c.2166	p.S722	0.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB8	HGNC	ENSG00000120322				204	0	0	115	41	26.2821
SH3RF2	0	genome.wustl.edu	37	5	145317619	145317619	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	5	145317619	145317619	C	T	SNP	SH3RF2	ENST00000359120	human	ensembl	74_37	+1	known	missense	c.128	p.A43V	1.000	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	pfam_SH3_2,pfam_SH3_domain,pfam_Znf_C3HC4_RING-type,superfamily_SH3_domain,smart_Znf_RING,smart_SH3_domain,pfscan_SH3_domain,pfscan_Znf_RING,prints_SH3_domain	-	no_errors	SH3RF2	HGNC	ENSG00000156463				81	0	0	54	22	28.9474
PCYOX1L	0	genome.wustl.edu	37	5	148748009	148748009	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	5	148748009	148748009	C	T	SNP	PCYOX1L	ENST00000274569	human	ensembl	74_37	+1	known	missense	c.1277	p.P426L	1.000	pfam_Prenylcys_lyase,pirsf_Prenylcysteine_Oxase	pfam_Prenylcys_lyase,pirsf_Prenylcysteine_Oxase	-	no_errors	PCYOX1L	HGNC	ENSG00000145882				72	0	0	43	23	34.8485
EBF1	0	genome.wustl.edu	37	5	158158138	158158138	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	5	158158138	158158138	C	T	SNP	EBF1	ENST00000313708	human	ensembl	74_37	-1	known	missense	c.1064	p.G355D	1.000	superfamily_bHLH_dom	pfam_IPT,superfamily_Ig_E-set,superfamily_bHLH_dom,smart_IPT	-	no_errors	EBF1	HGNC	ENSG00000164330				63	0	0	29	14	32.5581
LCP2	0	genome.wustl.edu	37	5	169689677	169689677	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	5	169689677	169689677	C	A	SNP	LCP2	ENST00000046794	human	ensembl	74_37	-1	known	missense	c.888	p.R296S	0.131	NULL	pfam_SH2,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,smart_SH2,pfscan_SH2	-	no_errors	LCP2	HGNC	ENSG00000043462				50	0	0	26	3	10.3448
FYB	0	genome.wustl.edu	37	5	39202557	39202557	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	5	39202557	39202557	G	A	SNP	FYB	ENST00000540520	human	ensembl	74_37	-1	known	missense	c.536	p.A179V	0.000	NULL	pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain	-	no_errors	FYB	HGNC	ENSG00000082074				188	0	0	111	61	35.4651
POU5F2	0	genome.wustl.edu	37	5	93077167	93077167	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	5	93077167	93077167	A	C	SNP	POU5F2	ENST00000510627	human	ensembl	74_37	-1	known	missense	c.103	p.L35V	0.000	NULL	pfam_POU_specific,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_POU_specific,prints_POU	-	no_errors	POU5F2	HGNC	ENSG00000248483				42	0	0	19	10	34.4828
SLC35D3	0	genome.wustl.edu	37	6	137245222	137245222	+	Silent	SNP	C	C	T			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	6	137245222	137245222	C	T	SNP	SLC35D3	ENST00000331858	human	ensembl	74_37	+1	known	silent	c.639	p.H213	0.998	pfam_Tpt_PEP_trans_dom	pfam_Tpt_PEP_trans_dom	-	no_errors	SLC35D3	HGNC	ENSG00000182747				26	0	0	11	4	26.6667
GRM1	0	genome.wustl.edu	37	6	146720544	146720544	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	6	146720544	146720544	C	T	SNP	GRM1	ENST00000282753	human	ensembl	74_37	+1	known	missense	c.2369	p.T790I	1.000	pfam_GPCR_3_C,pfscan_GPCR_3_C,prints_GPCR_3	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_Metabotropic_Glu_rcpt_Homer-bd,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3_mtglu_rcpt_1,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_5	-	no_errors	GRM1	HGNC	ENSG00000152822				138	0	0	74	43	36.7521
SYNE1	0	genome.wustl.edu	37	6	152651705	152651705	+	Silent	SNP	G	G	A			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	6	152651705	152651705	G	A	SNP	SYNE1	ENST00000265368	human	ensembl	74_37	-1	known	silent	c.14115	p.A4705	0.000	superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018				53	0	0	32	11	25.5814
PKHD1	0	genome.wustl.edu	37	6	51512896	51512896	+	Silent	SNP	C	C	A			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	6	51512896	51512896	C	A	SNP	PKHD1	ENST00000371117	human	ensembl	74_37	-1	known	silent	c.11331	p.L3777	0.983	NULL	pfam_IPT,pfam_G8_domain,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,smart_IPT,smart_PbH1	-	no_errors	PKHD1	HGNC	ENSG00000170927				161	0	0	101	37	26.8116
COL12A1	0	genome.wustl.edu	37	6	75893230	75893230	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	6	75893230	75893230	C	T	SNP	COL12A1	ENST00000322507	human	ensembl	74_37	-1	known	missense	c.1427	p.R476K	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_Fibronectin_type3,pfam_VWF_A,pfam_Collagen,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL12A1	HGNC	ENSG00000111799				115	0	0	66	34	34
MUC17	0	genome.wustl.edu	37	7	100678664	100678664	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	7	100678664	100678664	G	A	SNP	MUC17	ENST00000306151	human	ensembl	74_37	+1	known	missense	c.3967	p.E1323K	0.011	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_EG-like_dom,pfscan_SEA_dom	-	no_errors	MUC17	HGNC	ENSG00000169876				353	1	0.282486	223	102	31.3846
MUC17	0	genome.wustl.edu	37	7	100684284	100684284	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	7	100684284	100684284	C	A	SNP	MUC17	ENST00000306151	human	ensembl	74_37	+1	known	missense	c.9587	p.T3196N	0.082	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_EG-like_dom,pfscan_SEA_dom	-	no_errors	MUC17	HGNC	ENSG00000169876				495	0	0	262	153	36.8675
IFRD1	0	genome.wustl.edu	37	7	112102348	112102348	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	7	112102348	112102348	T	C	SNP	IFRD1	ENST00000005558	human	ensembl	74_37	+1	known	missense	c.821	p.L274P	1.000	pfam_Interferon-rel_develop_reg_N,superfamily_ARM-type_fold	pfam_Interferon-rel_develop_reg_N,pfam_Interferon-rel_develop_reg_C,superfamily_ARM-type_fold	-	no_errors	IFRD1	HGNC	ENSG00000006652				69	0	0	54	28	34.1463
FAM180A	0	genome.wustl.edu	37	7	135418743	135418743	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	7	135418743	135418743	G	T	SNP	FAM180A	ENST00000338588	human	ensembl	74_37	-1	known	missense	c.502	p.Q168K	0.000	NULL	NULL	-	no_errors	FAM180A	HGNC	ENSG00000189320				35	0	0	29	9	23.6842
AOC1	0	genome.wustl.edu	37	7	150557574	150557574	+	Silent	SNP	G	G	A			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	7	150557574	150557574	G	A	SNP	AOC1	ENST00000416793	human	ensembl	74_37	+1	known	silent	c.1899	p.S633	0.000	superfamily_Cu_amine_oxidase_C	pfam_Cu_amine_oxidase_C,pfam_Cu_amine_oxidase_N2,pfam_Cu_amine_oxidase_N3,superfamily_Cu_amine_oxidase_C,superfamily_Cu_amine_oxidase_N-reg,prints_Cu_amine_oxidase	-	no_errors	AOC1	HGNC	ENSG00000002726				64	0	0	44	25	36.2319
URGCP	0	genome.wustl.edu	37	7	43917871	43917871	+	Silent	SNP	G	G	A			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	7	43917871	43917871	G	A	SNP	URGCP	ENST00000453200	human	ensembl	74_37	-1	known	silent	c.1191	p.N397	1.000	NULL	superfamily_P-loop_NTPase,prints_GTP_binding_domain	-	no_errors	URGCP	HGNC	ENSG00000106608				169	0	0	99	52	34.4371
ADCY1	0	genome.wustl.edu	37	7	45614571	45614571	+	Silent	SNP	C	C	T			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	7	45614571	45614571	C	T	SNP	ADCY1	ENST00000297323	human	ensembl	74_37	+1	known	silent	c.429	p.G143	1.000	NULL	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY1	HGNC	ENSG00000164742				41	0	0	25	13	34.2105
PDGFA	0	genome.wustl.edu	37	7	552006	552006	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	7	552006	552006	G	A	SNP	PDGFA	ENST00000354513	human	ensembl	74_37	-1	known	missense	c.247	p.R83W	0.944	pfam_PDGF_N,pfscan_PDGF/VEGF_dom	pfam_PDGF/VEGF_dom,pfam_PDGF_N,smart_PDGF/VEGF_dom,pfscan_PDGF/VEGF_dom	-	no_errors	PDGFA	HGNC	ENSG00000197461				87	0	0	46	23	33.3333
FAM135B	0	genome.wustl.edu	37	8	139209873	139209873	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	8	139209873	139209873	C	T	SNP	FAM135B	ENST00000395297	human	ensembl	74_37	-1	known	missense	c.709	p.A237T	0.975	NULL	pfam_DUF676_lipase-like,pfam_DUF3657,pfam_PGAP1-like	-	no_errors	FAM135B	HGNC	ENSG00000147724				126	0	0	86	20	18.8679
PLEC	0	genome.wustl.edu	37	8	144997456	144997456	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	8	144997456	144997456	G	A	SNP	PLEC	ENST00000322810	human	ensembl	74_37	-1	known	missense	c.7052	p.A2351V	0.463	NULL	pfam_Plectin_repeat,pfam_CH-domain,pfam_S10_plectin_N,superfamily_CH-domain,superfamily_Chorismate_mutase_type_II,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,pfscan_CH-domain	-	no_errors	PLEC	HGNC	ENSG00000178209				30	0	0	14	12	46.1538
PPP3R2	0	genome.wustl.edu	37	9	104356919	104356919	+	Silent	SNP	C	C	T			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	9	104356919	104356919	C	T	SNP	PPP3R2	ENST00000374806	human	ensembl	74_37	-1	known	silent	c.294	p.A98	0.841	smart_EF_hand_dom,pfscan_EF_hand_dom	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom,prints_Recoverin	-	no_errors	PPP3R2	HGNC	ENSG00000188386				158	0	0	100	44	30.5556
NUP188	0	genome.wustl.edu	37	9	131768031	131768031	+	Silent	SNP	T	T	C			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	9	131768031	131768031	T	C	SNP	NUP188	ENST00000372577	human	ensembl	74_37	+1	known	silent	c.4845	p.N1615	0.988	NULL	pfam_Nucleoporin_Nup188,superfamily_ARM-type_fold	-	no_errors	NUP188	HGNC	ENSG00000095319				279	0	0	159	83	34.2975
FBXW5	0	genome.wustl.edu	37	9	139835750	139835750	+	Silent	SNP	G	G	A			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	9	139835750	139835750	G	A	SNP	FBXW5	ENST00000325285	human	ensembl	74_37	-1	known	silent	c.1410	p.D470	0.970	superfamily_Quinoprot_gluc/sorb_DH,smart_WD40_repeat	pfam_WD40_repeat,pfam_F-box_dom,superfamily_Quinoprot_gluc/sorb_DH,superfamily_F-box_dom,smart_F-box_dom,smart_WD40_repeat,pfscan_F-box_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	FBXW5	HGNC	ENSG00000159069				36	0	0	23	9	28.125
SAPCD2	0	genome.wustl.edu	37	9	139960781	139960781	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	9	139960781	139960781	C	T	SNP	SAPCD2	ENST00000409687	human	ensembl	74_37	-1	known	missense	c.617	p.R206Q	0.957	NULL	pfam_APC_dom	-	no_errors	SAPCD2	HGNC	ENSG00000186193				21	0	0	15	14	48.2759
MLLT3	0	genome.wustl.edu	37	9	20414340	20414340	+	Silent	SNP	G	G	A			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	9	20414340	20414340	G	A	SNP	MLLT3	ENST00000380338	human	ensembl	74_37	-1	known	silent	c.504	p.S168	1.000	NULL	pfam_YEATS,pfscan_YEATS	-	no_errors	MLLT3	HGNC	ENSG00000171843				62	0	0	66	4	5.71429
FAM166B	0	genome.wustl.edu	37	9	35562915	35562915	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	9	35562915	35562915	G	A	SNP	FAM166B	ENST00000447837	human	ensembl	74_37	-1	known	missense	c.449	p.P150L	0.000	NULL	pfam_UPF0573/UPF0605	-	no_errors	FAM166B	HGNC	ENSG00000215187				97	0	0	66	31	31.9588
BCOR	0	genome.wustl.edu	37	X	39931763	39931763	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	X	39931763	39931763	C	A	SNP	BCOR	ENST00000378444	human	ensembl	74_37	-1	known	nonsense	c.2836	p.E946*	0.922	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	BCOR	HGNC	ENSG00000183337				34	0	0	11	9	45
TRIM51HP	0	genome.wustl.edu	37	11	55065032	55065032	+	RNA	DEL	T	T	-			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	11	55065032	55065032	T	-	DEL	TRIM51HP	ENST00000526016	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.010	-	-	-	no_errors	TRIM51HP	HGNC	ENSG00000166007				42	0	0	56	12	17.6471
ARID2	0	genome.wustl.edu	37	12	46298723	46298724	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	12	46298723	46298724	AA	-	DEL	ARID2	ENST00000334344	human	ensembl	74_37	+1	known	frame_shift_del	c.5370_5371	p.K1791fs	1.000:1.000	NULL	pfam_ARID/BRIGHT_DNA-bd,pfam_DNA-bd_RFX,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID2	HGNC	ENSG00000189079				63	0	0	40	10	20
CNKSR2	0	genome.wustl.edu	37	X	21627677	21627678	+	In_Frame_Ins	INS	-	-	GAG			TCGA-BR-6455-01A-11D-1800-08	TCGA-BR-6455-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9bf3beb5-f999-4822-a0af-ec36f9510d58	db67ce76-e686-4298-a5c1-59638619e250	X	21627677	21627678	-	GAG	INS	CNKSR2	ENST00000379510	human	ensembl	74_37	+1	known	in_frame_ins	c.2634_2635	p.882in_frame_insE	0.989:0.997	NULL	pfam_CNKSR2,pfam_CRIC_domain_Chordata,pfam_SAM_type1,pfam_Pleckstrin_homology,pfam_SAM_2,pfam_PDZ,superfamily_SAM/pointed,superfamily_PDZ,smart_SAM,smart_PDZ,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_SAM	-	no_errors	CNKSR2	HGNC	ENSG00000149970				31	0	0	22	9	29.0323
