Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
SPRR2F	0	genome.wustl.edu	37	1	153085229	153085229	+	Splice_Site	SNP	C	C	T			TCGA-BR-6456-01A-11D-1800-08	TCGA-BR-6456-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c612570a-881d-421f-98b9-0e4563133744	0adf6445-5470-4b30-923f-5028bdd471b3	1	153085229	153085229	C	T	SNP	SPRR2F	ENST00000468739	human	ensembl	74_37	-1	known	splice_site	c.1-1	e1-1	0.998	-	-	-	no_errors	SPRR2F	HGNC	ENSG00000244094				70	0	0	58	5	7.93651
LY9	0	genome.wustl.edu	37	1	160783561	160783561	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6456-01A-11D-1800-08	TCGA-BR-6456-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c612570a-881d-421f-98b9-0e4563133744	0adf6445-5470-4b30-923f-5028bdd471b3	1	160783561	160783561	A	G	SNP	LY9	ENST00000263285	human	ensembl	74_37	+1	known	missense	c.590	p.H197R	0.009	pfscan_Ig-like_dom	smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	LY9	HGNC	ENSG00000122224				165	1	0.60241	134	15	10.0671
PPP1R15B	0	genome.wustl.edu	37	1	204380537	204380537	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6456-01A-11D-1800-08	TCGA-BR-6456-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c612570a-881d-421f-98b9-0e4563133744	0adf6445-5470-4b30-923f-5028bdd471b3	1	204380537	204380537	C	G	SNP	PPP1R15B	ENST00000367188	human	ensembl	74_37	-1	known	missense	c.3	p.M1I	1.000	pfam_Prot_Pase1_reg-su15B_N	pfam_Prot_Pase1_reg-su15B_N,pfam_Prot_Pase1_reg-su15A/B_C	-	no_errors	PPP1R15B	HGNC	ENSG00000158615				95	0	0	66	6	8.33333
EXO1	0	genome.wustl.edu	37	1	242016726	242016726	+	Silent	SNP	A	A	G			TCGA-BR-6456-01A-11D-1800-08	TCGA-BR-6456-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c612570a-881d-421f-98b9-0e4563133744	0adf6445-5470-4b30-923f-5028bdd471b3	1	242016726	242016726	A	G	SNP	EXO1	ENST00000348581	human	ensembl	74_37	+1	known	silent	c.348	p.R116	1.000	NULL	pfam_XPG-I_dom,pfam_XPG_DNA_repair_N,superfamily_5-3_exonuclease_C,smart_XPG_DNA_repair_N,smart_XPG-I_dom,smart_HhH2,prints_XPG/Rad2	-	no_errors	EXO1	HGNC	ENSG00000174371				124	0	0	79	30	27.5229
MED8	0	genome.wustl.edu	37	1	43851858	43851858	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6456-01A-11D-1800-08	TCGA-BR-6456-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c612570a-881d-421f-98b9-0e4563133744	0adf6445-5470-4b30-923f-5028bdd471b3	1	43851858	43851858	G	A	SNP	MED8	ENST00000290663	human	ensembl	74_37	-1	known	missense	c.533	p.T178I	1.000	pfam_Mediatior_Med8_fun/met	pfam_Mediatior_Med8_fun/met	-	no_errors	MED8	HGNC	ENSG00000159479				127	0	0	69	12	14.8148
TACSTD2	0	genome.wustl.edu	37	1	59042472	59042472	+	Silent	SNP	G	G	A			TCGA-BR-6456-01A-11D-1800-08	TCGA-BR-6456-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c612570a-881d-421f-98b9-0e4563133744	0adf6445-5470-4b30-923f-5028bdd471b3	1	59042472	59042472	G	A	SNP	TACSTD2	ENST00000371225	human	ensembl	74_37	-1	known	silent	c.357	p.C119	1.000	pfam_Thyroglobulin_1,superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,pfscan_Thyroglobulin_1	pfam_Thyroglobulin_1,superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,pfscan_Thyroglobulin_1	-	no_errors	TACSTD2	HGNC	ENSG00000184292				12	0	0	13	3	18.75
CPN1	0	genome.wustl.edu	37	10	101829528	101829528	+	Silent	SNP	G	G	A			TCGA-BR-6456-01A-11D-1800-08	TCGA-BR-6456-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c612570a-881d-421f-98b9-0e4563133744	0adf6445-5470-4b30-923f-5028bdd471b3	10	101829528	101829528	G	A	SNP	CPN1	ENST00000370418	human	ensembl	74_37	-1	known	silent	c.519	p.N173	0.809	pfam_Peptidase_M14,pfam_DUF2817,smart_Peptidase_M14	pfam_Peptidase_M14,pfam_DUF2817,superfamily_CarboxyPept-like_regulatory,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPN1	HGNC	ENSG00000120054				141	0	0	75	35	31.8182
MTPAP	0	genome.wustl.edu	37	10	30615481	30615481	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6456-01A-11D-1800-08	TCGA-BR-6456-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c612570a-881d-421f-98b9-0e4563133744	0adf6445-5470-4b30-923f-5028bdd471b3	10	30615481	30615481	T	G	SNP	MTPAP	ENST00000358107	human	ensembl	74_37	-1	known	missense	c.1254	p.L418F	0.988	NULL	pfam_PAP_assoc	-	no_errors	MTPAP	HGNC	ENSG00000107951				205	0	0	214	56	20.7407
MMP20	0	genome.wustl.edu	37	11	102496027	102496027	+	Silent	SNP	G	G	A			TCGA-BR-6456-01A-11D-1800-08	TCGA-BR-6456-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c612570a-881d-421f-98b9-0e4563133744	0adf6445-5470-4b30-923f-5028bdd471b3	11	102496027	102496027	G	A	SNP	MMP20	ENST00000260228	human	ensembl	74_37	-1	known	silent	c.24	p.G8	0.990	pirsf_Pept_M10A_Metazoans	pirsf_Pept_M10A_Metazoans,pfam_Pept_M10_metallopeptidase,pfam_Hemopexin-like_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin-like_repeat,prints_Pept_M10A	-	no_errors	MMP20	HGNC	ENSG00000137674				77	0	0	90	27	23.0769
MMP8	0	genome.wustl.edu	37	11	102584178	102584178	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6456-01A-11D-1800-08	TCGA-BR-6456-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c612570a-881d-421f-98b9-0e4563133744	0adf6445-5470-4b30-923f-5028bdd471b3	11	102584178	102584178	A	T	SNP	MMP8	ENST00000236826	human	ensembl	74_37	-1	known	missense	c.1305	p.H435Q	0.985	pfam_Hemopexin-like_repeat,superfamily_Hemopexin-like_dom,smart_Hemopexin-like_repeat,pirsf_Pept_M10A_Metazoans	pfam_Pept_M10_metallopeptidase,pfam_Hemopexin-like_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin-like_repeat,pirsf_Pept_M10A_Metazoans,prints_Pept_M10A	-	no_errors	MMP8	HGNC	ENSG00000118113				87	0	0	83	51	38.0597
DYNC2H1	0	genome.wustl.edu	37	11	103270478	103270478	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6456-01A-11D-1800-08	TCGA-BR-6456-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c612570a-881d-421f-98b9-0e4563133744	0adf6445-5470-4b30-923f-5028bdd471b3	11	103270478	103270478	A	T	SNP	DYNC2H1	ENST00000398093	human	ensembl	74_37	+1	known	missense	c.12265	p.N4089Y	1.000	pfam_Dynein_heavy_dom	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DYNC2H1	HGNC	ENSG00000187240				75	0	0	69	34	33.0097
FLI1	0	genome.wustl.edu	37	11	128680436	128680436	+	Silent	SNP	G	G	T			TCGA-BR-6456-01A-11D-1800-08	TCGA-BR-6456-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c612570a-881d-421f-98b9-0e4563133744	0adf6445-5470-4b30-923f-5028bdd471b3	11	128680436	128680436	G	T	SNP	FLI1	ENST00000527786	human	ensembl	74_37	+1	known	silent	c.912	p.G304	0.942	pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom	pfam_Ets_dom,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	FLI1	HGNC	ENSG00000151702				21	0	0	18	11	37.931
CKAP5	0	genome.wustl.edu	37	11	46799806	46799806	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6456-01A-11D-1800-08	TCGA-BR-6456-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c612570a-881d-421f-98b9-0e4563133744	0adf6445-5470-4b30-923f-5028bdd471b3	11	46799806	46799806	C	A	SNP	CKAP5	ENST00000415402	human	ensembl	74_37	-1	known	missense	c.2631	p.R877S	1.000	pfam_CLASP_N_dom,superfamily_ARM-type_fold	pfam_CLASP_N_dom,pfam_HEAT,superfamily_ARM-type_fold,superfamily_Homing_endonucl,pfscan_HEAT_type_2	-	no_errors	CKAP5	HGNC	ENSG00000175216				101	0	0	95	28	22.7642
FOXN4	0	genome.wustl.edu	37	12	109719324	109719324	+	Silent	SNP	C	C	A			TCGA-BR-6456-01A-11D-1800-08	TCGA-BR-6456-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c612570a-881d-421f-98b9-0e4563133744	0adf6445-5470-4b30-923f-5028bdd471b3	12	109719324	109719324	C	A	SNP	FOXN4	ENST00000299162	human	ensembl	74_37	-1	known	silent	c.1182	p.P394	0.848	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXN4	HGNC	ENSG00000139445				39	0	0	19	10	34.4828
LRRK2	0	genome.wustl.edu	37	12	40671789	40671789	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6456-01A-11D-1800-08	TCGA-BR-6456-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c612570a-881d-421f-98b9-0e4563133744	0adf6445-5470-4b30-923f-5028bdd471b3	12	40671789	40671789	T	C	SNP	LRRK2	ENST00000298910	human	ensembl	74_37	+1	known	missense	c.2041	p.S681P	0.127	superfamily_ARM-type_fold	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_MIRO-like,pfam_Small_GTPase,pfam_Leu-rich_rpt,pfam_Small_GTPase_ARF/SAR,superfamily_Kinase-like_dom,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,superfamily_WD40_repeat_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Small_GTPase_Rab_type,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,prints_Small_GTPase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	LRRK2	HGNC	ENSG00000188906				89	0	0	61	7	10.2941
DBX2	0	genome.wustl.edu	37	12	45444623	45444623	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6456-01A-11D-1800-08	TCGA-BR-6456-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c612570a-881d-421f-98b9-0e4563133744	0adf6445-5470-4b30-923f-5028bdd471b3	12	45444623	45444623	C	T	SNP	DBX2	ENST00000332700	human	ensembl	74_37	-1	known	missense	c.88	p.G30S	0.487	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_HTH_motif,prints_Homeobox_metazoa	-	no_errors	DBX2	HGNC	ENSG00000185610				15	0	0	9	3	25
COL4A1	0	genome.wustl.edu	37	13	110861227	110861227	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6456-01A-11D-1800-08	TCGA-BR-6456-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c612570a-881d-421f-98b9-0e4563133744	0adf6445-5470-4b30-923f-5028bdd471b3	13	110861227	110861227	C	T	SNP	COL4A1	ENST00000375820	human	ensembl	74_37	-1	known	missense	c.662	p.G221D	1.000	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A1	HGNC	ENSG00000187498				132	0	0	72	32	30.7692
SLC12A1	0	genome.wustl.edu	37	15	48527094	48527094	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6456-01A-11D-1800-08	TCGA-BR-6456-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c612570a-881d-421f-98b9-0e4563133744	0adf6445-5470-4b30-923f-5028bdd471b3	15	48527094	48527094	T	G	SNP	SLC12A1	ENST00000380993	human	ensembl	74_37	+1	known	missense	c.1108	p.F370V	1.000	pfam_AA-permease/SLC12A_dom,tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease/SLC12A_dom,pfam_AA_permease_N,prints_Na/K/Cl_cotranspt2,prints_Na/K/Cl_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A1	HGNC	ENSG00000074803				116	0	0	63	20	24.0964
SCNN1B	0	genome.wustl.edu	37	16	23366787	23366787	+	Silent	SNP	C	C	T			TCGA-BR-6456-01A-11D-1800-08	TCGA-BR-6456-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c612570a-881d-421f-98b9-0e4563133744	0adf6445-5470-4b30-923f-5028bdd471b3	16	23366787	23366787	C	T	SNP	SCNN1B	ENST00000307331	human	ensembl	74_37	+1	known	silent	c.888	p.F296	0.763	pfam_Na+channel_ASC,prints_Na+channel_ASC,tigrfam_EnaC	pfam_Na+channel_ASC,prints_Na+channel_ASC,tigrfam_EnaC	-	no_errors	SCNN1B	HGNC	ENSG00000168447				58	0	0	40	5	11.1111
SLC5A2	0	genome.wustl.edu	37	16	31500611	31500611	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6456-01A-11D-1800-08	TCGA-BR-6456-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c612570a-881d-421f-98b9-0e4563133744	0adf6445-5470-4b30-923f-5028bdd471b3	16	31500611	31500611	C	A	SNP	SLC5A2	ENST00000419665	human	ensembl	74_37	+1	known	missense	c.1297	p.P433T	0.986	NULL	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A2	HGNC	ENSG00000140675				34	0	0	22	4	15.3846
NOS2	0	genome.wustl.edu	37	17	26105786	26105786	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6456-01A-11D-1800-08	TCGA-BR-6456-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c612570a-881d-421f-98b9-0e4563133744	0adf6445-5470-4b30-923f-5028bdd471b3	17	26105786	26105786	T	C	SNP	NOS2	ENST00000313735	human	ensembl	74_37	-1	known	missense	c.1211	p.H404R	1.000	pfam_NO_synthase_oxygenase_dom,superfamily_NO_synthase_oxygenase_dom,pirsf_NOS_euk	pfam_NO_synthase_oxygenase_dom,pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,superfamily_NO_synthase_oxygenase_dom,superfamily_Riboflavin_synthase-like_b-brl,pirsf_NOS_euk,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	NOS2	HGNC	ENSG00000007171				121	0	0	66	25	27.4725
ALOX12	0	genome.wustl.edu	37	17	6902654	6902654	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6456-01A-11D-1800-08	TCGA-BR-6456-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c612570a-881d-421f-98b9-0e4563133744	0adf6445-5470-4b30-923f-5028bdd471b3	17	6902654	6902654	G	A	SNP	ALOX12	ENST00000251535	human	ensembl	74_37	+1	known	missense	c.676	p.E226K	0.991	pfam_LipOase_C,superfamily_LipOase_C	pfam_LipOase_C,pfam_PLAT/LH2_dom,superfamily_LipOase_C,superfamily_Lipase_LipOase,smart_PLAT/LH2_dom,pfscan_PLAT/LH2_dom,prints_LipOase_mml,prints_LipOase_C	-	no_errors	ALOX12	HGNC	ENSG00000108839				98	0	0	48	17	26.1538
TP53	0	genome.wustl.edu	37	17	7578271	7578271	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6456-01A-11D-1800-08	TCGA-BR-6456-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c612570a-881d-421f-98b9-0e4563133744	0adf6445-5470-4b30-923f-5028bdd471b3	17	7578271	7578271	T	C	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	missense	c.578	p.H193R	0.998	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510				66	0	0	25	6	19.3548
FAM129C	0	genome.wustl.edu	37	19	17641671	17641671	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6456-01A-11D-1800-08	TCGA-BR-6456-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c612570a-881d-421f-98b9-0e4563133744	0adf6445-5470-4b30-923f-5028bdd471b3	19	17641671	17641671	G	A	SNP	FAM129C	ENST00000335393	human	ensembl	74_37	+1	known	missense	c.256	p.G86R	0.006	NULL	smart_Pleckstrin_homology	-	no_errors	FAM129C	HGNC	ENSG00000167483				56	0	0	49	16	24.6154
TBXA2R	0	genome.wustl.edu	37	19	3600596	3600596	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6456-01A-11D-1800-08	TCGA-BR-6456-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c612570a-881d-421f-98b9-0e4563133744	0adf6445-5470-4b30-923f-5028bdd471b3	19	3600596	3600596	G	A	SNP	TBXA2R	ENST00000411851	human	ensembl	74_37	-1	known	missense	c.37	p.R13W	1.000	prints_Thbox_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Thbox_rcpt,prints_Prostanoid_rcpt,prints_GPCR_Rhodpsn	-	no_errors	TBXA2R	HGNC	ENSG00000006638				39	0	0	26	11	29.7297
MATK	0	genome.wustl.edu	37	19	3789316	3789316	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6456-01A-11D-1800-08	TCGA-BR-6456-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c612570a-881d-421f-98b9-0e4563133744	0adf6445-5470-4b30-923f-5028bdd471b3	19	3789316	3789316	T	A	SNP	MATK	ENST00000395045	human	ensembl	74_37	-1	known	missense	c.30	p.R10S	0.001	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	MATK	HGNC	ENSG00000007264				59	0	0	27	17	38.6364
ZNF665	0	genome.wustl.edu	37	19	53669357	53669357	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6456-01A-11D-1800-08	TCGA-BR-6456-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c612570a-881d-421f-98b9-0e4563133744	0adf6445-5470-4b30-923f-5028bdd471b3	19	53669357	53669357	C	T	SNP	ZNF665	ENST00000396424	human	ensembl	74_37	-1	known	missense	c.386	p.R129K	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF665	HGNC	ENSG00000197497				227	0	0	150	45	23.0769
PXDN	0	genome.wustl.edu	37	2	1643143	1643143	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6456-01A-11D-1800-08	TCGA-BR-6456-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c612570a-881d-421f-98b9-0e4563133744	0adf6445-5470-4b30-923f-5028bdd471b3	2	1643143	1643143	C	G	SNP	PXDN	ENST00000252804	human	ensembl	74_37	-1	known	missense	c.4004	p.R1335T	0.129	NULL	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like_dom	-	no_errors	PXDN	HGNC	ENSG00000130508				59	0	0	49	11	18.3333
SP100	0	genome.wustl.edu	37	2	231379989	231379989	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6456-01A-11D-1800-08	TCGA-BR-6456-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c612570a-881d-421f-98b9-0e4563133744	0adf6445-5470-4b30-923f-5028bdd471b3	2	231379989	231379989	G	T	SNP	SP100	ENST00000264052	human	ensembl	74_37	+1	known	missense	c.2274	p.E758D	1.000	superfamily_HMG_box_dom	pfam_Sp100,pfam_SAND_dom,pfam_HMG_box_dom,superfamily_SAND_dom-like,superfamily_HMG_box_dom,smart_SAND_dom,smart_HMG_box_dom,pfscan_SAND_dom,pfscan_HMG_box_dom	-	no_errors	SP100	HGNC	ENSG00000067066				117	0	0	75	28	27.1845
IGSF11	0	genome.wustl.edu	37	3	118645024	118645024	+	Silent	SNP	C	C	T			TCGA-BR-6456-01A-11D-1800-08	TCGA-BR-6456-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c612570a-881d-421f-98b9-0e4563133744	0adf6445-5470-4b30-923f-5028bdd471b3	3	118645024	118645024	C	T	SNP	IGSF11	ENST00000393775	human	ensembl	74_37	-1	known	silent	c.504	p.E168	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	IGSF11	HGNC	ENSG00000144847				75	0	0	62	14	18.4211
ARHGAP31	0	genome.wustl.edu	37	3	119112366	119112366	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6456-01A-11D-1800-08	TCGA-BR-6456-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c612570a-881d-421f-98b9-0e4563133744	0adf6445-5470-4b30-923f-5028bdd471b3	3	119112366	119112366	C	T	SNP	ARHGAP31	ENST00000264245	human	ensembl	74_37	+1	known	missense	c.934	p.R312C	1.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP31	HGNC	ENSG00000031081				133	0	0	93	27	22.5
TMCC1	0	genome.wustl.edu	37	3	129389972	129389972	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6456-01A-11D-1800-08	TCGA-BR-6456-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c612570a-881d-421f-98b9-0e4563133744	0adf6445-5470-4b30-923f-5028bdd471b3	3	129389972	129389972	G	T	SNP	TMCC1	ENST00000393238	human	ensembl	74_37	-1	known	missense	c.712	p.Q238K	1.000	pfam_Predicted_TM_coiled-coil_2	pfam_Predicted_TM_coiled-coil_2	-	no_errors	TMCC1	HGNC	ENSG00000172765				230	0	0	183	46	20.0873
SCN11A	0	genome.wustl.edu	37	3	38941492	38941492	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6456-01A-11D-1800-08	TCGA-BR-6456-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c612570a-881d-421f-98b9-0e4563133744	0adf6445-5470-4b30-923f-5028bdd471b3	3	38941492	38941492	G	A	SNP	SCN11A	ENST00000302328	human	ensembl	74_37	-1	known	nonsense	c.1915	p.R639*	0.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,prints_Na_channel_asu	-	no_errors	SCN11A	HGNC	ENSG00000168356				43	0	0	25	13	34.2105
HHATL	0	genome.wustl.edu	37	3	42735277	42735277	+	Silent	SNP	G	G	A			TCGA-BR-6456-01A-11D-1800-08	TCGA-BR-6456-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c612570a-881d-421f-98b9-0e4563133744	0adf6445-5470-4b30-923f-5028bdd471b3	3	42735277	42735277	G	A	SNP	HHATL	ENST00000310417	human	ensembl	74_37	-1	known	silent	c.1080	p.S360	0.010	pfam_MBOAT_fam	pfam_MBOAT_fam	-	no_errors	HHATL	HGNC	ENSG00000010282				67	0	0	28	8	22.2222
REST	0	genome.wustl.edu	37	4	57797479	57797479	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6456-01A-11D-1800-08	TCGA-BR-6456-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c612570a-881d-421f-98b9-0e4563133744	0adf6445-5470-4b30-923f-5028bdd471b3	4	57797479	57797479	G	T	SNP	REST	ENST00000309042	human	ensembl	74_37	+1	known	missense	c.2455	p.D819Y	0.137	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	REST	HGNC	ENSG00000084093				205	0	0	146	48	24.7423
PCDHGA1	0	genome.wustl.edu	37	5	140712464	140712464	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6456-01A-11D-1800-08	TCGA-BR-6456-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c612570a-881d-421f-98b9-0e4563133744	0adf6445-5470-4b30-923f-5028bdd471b3	5	140712464	140712464	C	T	SNP	PCDHGA1	ENST00000517417	human	ensembl	74_37	+1	known	missense	c.2213	p.S738L	0.221	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA1	HGNC	ENSG00000204956				105	0	0	71	24	25.2632
GPRIN1	0	genome.wustl.edu	37	5	176026581	176026581	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6456-01A-11D-1800-08	TCGA-BR-6456-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c612570a-881d-421f-98b9-0e4563133744	0adf6445-5470-4b30-923f-5028bdd471b3	5	176026581	176026581	G	T	SNP	GPRIN1	ENST00000303991	human	ensembl	74_37	-1	known	missense	c.255	p.D85E	0.257	NULL	NULL	-	no_errors	GPRIN1	HGNC	ENSG00000169258				89	0	0	36	12	25
ADAMTS12	0	genome.wustl.edu	37	5	33561157	33561157	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6456-01A-11D-1800-08	TCGA-BR-6456-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c612570a-881d-421f-98b9-0e4563133744	0adf6445-5470-4b30-923f-5028bdd471b3	5	33561157	33561157	C	A	SNP	ADAMTS12	ENST00000504830	human	ensembl	74_37	-1	known	missense	c.4100	p.G1367V	0.895	smart_Thrombospondin_1_rpt	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS12	HGNC	ENSG00000151388				174	0	0	106	16	13.1148
GPR98	0	genome.wustl.edu	37	5	89938526	89938526	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6456-01A-11D-1800-08	TCGA-BR-6456-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c612570a-881d-421f-98b9-0e4563133744	0adf6445-5470-4b30-923f-5028bdd471b3	5	89938526	89938526	C	T	SNP	GPR98	ENST00000405460	human	ensembl	74_37	+1	known	missense	c.2314	p.P772S	1.000	smart_Calx_beta	pfam_Calx_beta,pfam_EPTP,pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Gal_Oxase/kelch_b-propeller,smart_Calx_beta,pfscan_EAR,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR98	HGNC	ENSG00000164199				196	1	0.507614	133	41	23.5632
CDK14	0	genome.wustl.edu	37	7	90747439	90747439	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6456-01A-11D-1800-08	TCGA-BR-6456-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c612570a-881d-421f-98b9-0e4563133744	0adf6445-5470-4b30-923f-5028bdd471b3	7	90747439	90747439	C	T	SNP	CDK14	ENST00000380050	human	ensembl	74_37	+1	known	missense	c.1354	p.R452W	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDK14	HGNC	ENSG00000058091				95	0	0	113	9	7.37705
TG	0	genome.wustl.edu	37	8	133900554	133900554	+	Silent	SNP	G	G	A			TCGA-BR-6456-01A-11D-1800-08	TCGA-BR-6456-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c612570a-881d-421f-98b9-0e4563133744	0adf6445-5470-4b30-923f-5028bdd471b3	8	133900554	133900554	G	A	SNP	TG	ENST00000220616	human	ensembl	74_37	+1	known	silent	c.2502	p.P834	0.002	superfamily_Thyroglobulin_1,pirsf_Thyroglobulin,pfscan_Thyroglobulin_1	pfam_Thyroglobulin_1,pfam_CarbesteraseB,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,pirsf_Thyroglobulin,pfscan_Thyroglobulin_1	-	no_errors	TG	HGNC	ENSG00000042832				107	0	0	69	18	20.6897
FAM110B	0	genome.wustl.edu	37	8	59059521	59059521	+	Silent	SNP	G	G	T			TCGA-BR-6456-01A-11D-1800-08	TCGA-BR-6456-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c612570a-881d-421f-98b9-0e4563133744	0adf6445-5470-4b30-923f-5028bdd471b3	8	59059521	59059521	G	T	SNP	FAM110B	ENST00000361488	human	ensembl	74_37	+1	known	silent	c.732	p.V244	0.999	NULL	NULL	-	no_errors	FAM110B	HGNC	ENSG00000169122				127	0	0	90	48	34.7826
RGAG1	0	genome.wustl.edu	37	X	109695526	109695526	+	Silent	SNP	T	T	C			TCGA-BR-6456-01A-11D-1800-08	TCGA-BR-6456-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c612570a-881d-421f-98b9-0e4563133744	0adf6445-5470-4b30-923f-5028bdd471b3	X	109695526	109695526	T	C	SNP	RGAG1	ENST00000465301	human	ensembl	74_37	+1	known	silent	c.1681	p.L561	0.001	NULL	NULL	-	no_errors	RGAG1	HGNC	ENSG00000243978				158	1	0.628931	135	40	22.8571
THOC2	0	genome.wustl.edu	37	X	122744807	122744807	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6456-01A-11D-1800-08	TCGA-BR-6456-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c612570a-881d-421f-98b9-0e4563133744	0adf6445-5470-4b30-923f-5028bdd471b3	X	122744807	122744807	A	G	SNP	THOC2	ENST00000245838	human	ensembl	74_37	-1	known	missense	c.4762	p.S1588P	1.000	NULL	pfam_THO_THOC2_C,pfam_THO_THOC2_N	-	no_errors	THOC2	HGNC	ENSG00000125676				58	0	0	59	10	14.4928
GABRQ	0	genome.wustl.edu	37	X	151808925	151808925	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6456-01A-11D-1800-08	TCGA-BR-6456-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c612570a-881d-421f-98b9-0e4563133744	0adf6445-5470-4b30-923f-5028bdd471b3	X	151808925	151808925	G	T	SNP	GABRQ	ENST00000370306	human	ensembl	74_37	+1	known	missense	c.236	p.G79V	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,prints_GABAAa_rcpt,prints_GABBAg_rcpt,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAt_rcpt,prints_GABAA_rcpt,prints_Neur_channel,prints_GABAAb_rcpt,prints_GABAAa_rcpt,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRQ	HGNC	ENSG00000147402				217	0	0	182	31	14.554
P2RY8	0	genome.wustl.edu	37	X	1585140	1585140	+	Silent	SNP	G	G	A			TCGA-BR-6456-01A-11D-1800-08	TCGA-BR-6456-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c612570a-881d-421f-98b9-0e4563133744	0adf6445-5470-4b30-923f-5028bdd471b3	X	1585140	1585140	G	A	SNP	P2RY8	ENST00000381297	human	ensembl	74_37	-1	known	silent	c.312	p.Y104	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Protea_act_rcpt	-	no_errors	P2RY8	HGNC	ENSG00000182162				60	0	0	47	5	9.61538
STARD8	0	genome.wustl.edu	37	X	67943490	67943490	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6456-01A-11D-1800-08	TCGA-BR-6456-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c612570a-881d-421f-98b9-0e4563133744	0adf6445-5470-4b30-923f-5028bdd471b3	X	67943490	67943490	G	A	SNP	STARD8	ENST00000374599	human	ensembl	74_37	+1	known	missense	c.2822	p.R941Q	0.838	pfam_START_lipid-bd_dom,smart_START_lipid-bd_dom,pfscan_START_lipid-bd_dom	pfam_START_lipid-bd_dom,pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,smart_START_lipid-bd_dom,pfscan_START_lipid-bd_dom,pfscan_RhoGAP_dom	-	no_errors	STARD8	HGNC	ENSG00000130052				17	0	0	8	3	27.2727
ARID1A	0	genome.wustl.edu	37	1	27101266	27101266	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6456-01A-11D-1800-08	TCGA-BR-6456-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c612570a-881d-421f-98b9-0e4563133744	0adf6445-5470-4b30-923f-5028bdd471b3	1	27101266	27101266	T	-	DEL	ARID1A	ENST00000324856	human	ensembl	74_37	+1	known	frame_shift_del	c.4548	p.A1517fs	1.000	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1A	HGNC	ENSG00000117713				124	0	0	82	15	15.4639
VIPAS39	0	genome.wustl.edu	37	14	77910667	77910668	+	Frame_Shift_Del	DEL	TC	TC	-			TCGA-BR-6456-01A-11D-1800-08	TCGA-BR-6456-10A-01D-1800-08	TC	TC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c612570a-881d-421f-98b9-0e4563133744	0adf6445-5470-4b30-923f-5028bdd471b3	14	77910667	77910668	TC	-	DEL	VIPAS39	ENST00000343765	human	ensembl	74_37	-1	known	frame_shift_del	c.522_521	p.R174fs	0.999:1.000	pfam_Golgin_subfamily_A_member_5	pfam_Golgin_subfamily_A_member_5	-	no_errors	VIPAS39	HGNC	ENSG00000151445				68	0	0	36	16	30.7692
KMT2B	0	genome.wustl.edu	37	19	36229073	36229075	+	In_Frame_Del	DEL	AGA	AGA	-			TCGA-BR-6456-01A-11D-1800-08	TCGA-BR-6456-10A-01D-1800-08	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c612570a-881d-421f-98b9-0e4563133744	0adf6445-5470-4b30-923f-5028bdd471b3	19	36229073	36229075	AGA	-	DEL	KMT2B	ENST00000222270	human	ensembl	74_37	+1	known	in_frame_del	c.7853_7855	p.K2619in_frame_del	1.000:1.000:1.000	pirsf_MeTrfase_trithorax,pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	pirsf_MeTrfase_trithorax,pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	KMT2B	Uniprot_gn	ENSG00000272333				56	0	0	39	19	32.7586
