Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
WNT2B	0	genome.wustl.edu	37	1	113058897	113058897	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	1	113058897	113058897	G	A	SNP	WNT2B	ENST00000369684	human	ensembl	74_37	+1	known	missense	c.539	p.R180H	0.793	pfam_Wnt,smart_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt2	-	no_errors	WNT2B	HGNC	ENSG00000134245				121	0	0	94	17	15.3153
FLG2	0	genome.wustl.edu	37	1	152327633	152327633	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	1	152327633	152327633	T	A	SNP	FLG2	ENST00000388718	human	ensembl	74_37	-1	known	missense	c.2629	p.S877C	0.002	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG2	HGNC	ENSG00000143520				249	0	0	187	69	26.9531
SEMA4A	0	genome.wustl.edu	37	1	156146218	156146218	+	Silent	SNP	C	C	T			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	1	156146218	156146218	C	T	SNP	SEMA4A	ENST00000355014	human	ensembl	74_37	+1	known	silent	c.1716	p.P572	0.995	NULL	pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,pfscan_Semap_dom	-	no_errors	SEMA4A	HGNC	ENSG00000196189				50	0	0	33	3	8.33333
COPA	0	genome.wustl.edu	37	1	160263238	160263238	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	1	160263238	160263238	C	T	SNP	COPA	ENST00000368069	human	ensembl	74_37	-1	known	missense	c.2719	p.A907T	1.000	pfam_Coatomer_asu_C,pirsf_Coatomer_asu	pfam_Coatomer_asu_C,pfam_Coatomer_WD-assoc_reg,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_Coatomer_asu,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	COPA	HGNC	ENSG00000122218				25	0	0	16	3	15.7895
HSPG2	0	genome.wustl.edu	37	1	22188576	22188576	+	Silent	SNP	G	G	A			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	1	22188576	22188576	G	A	SNP	HSPG2	ENST00000374695	human	ensembl	74_37	-1	known	silent	c.4773	p.C1591	0.372	pfam_EGF_laminin,smart_EGF_laminin,smart_EG-like_dom,pfscan_EGF_laminin	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Laminin_G,pfam_Laminin_B_type_IV,pfam_EGF_laminin,pfam_LDrepeatLR_classA_rpt,pfam_EG-like_dom,superfamily_ConA-like_lec_gl_sf,superfamily_LDrepeatLR_classA_rpt,smart_SEA_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Laminin_B_subgr,smart_EGF_laminin,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_LDrepeatLR_classA_rpt,pfscan_SEA_dom,pfscan_Ig-like_dom,prints_LDrepeatLR_classA_rpt	-	no_errors	HSPG2	HGNC	ENSG00000142798				71	0	0	54	8	12.9032
OBSCN	0	genome.wustl.edu	37	1	228437778	228437778	+	Silent	SNP	G	G	A			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	1	228437778	228437778	G	A	SNP	OBSCN	ENST00000422127	human	ensembl	74_37	+1	known	silent	c.4146	p.T1382	0.012	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358				123	0	0	112	15	11.811
SIPA1L2	0	genome.wustl.edu	37	1	232581434	232581434	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	1	232581434	232581434	G	A	SNP	SIPA1L2	ENST00000262861	human	ensembl	74_37	-1	known	missense	c.3194	p.T1065M	1.000	NULL	pfam_DUF3401,pfam_Rap_GAP_dom,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP_dom	-	no_errors	SIPA1L2	HGNC	ENSG00000116991				108	0	0	88	7	7.36842
LGALS8	0	genome.wustl.edu	37	1	236708103	236708103	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	1	236708103	236708103	A	T	SNP	LGALS8	ENST00000352231	human	ensembl	74_37	+1	known	missense	c.818	p.N273I	1.000	pfam_Galectin_CRD,superfamily_ConA-like_lec_gl_sf,smart_Galectin_CRD	pfam_Galectin_CRD,superfamily_ConA-like_lec_gl_sf,smart_Galectin_CRD	-	no_errors	LGALS8	HGNC	ENSG00000116977				132	0	0	128	14	9.85915
FMN2	0	genome.wustl.edu	37	1	240555838	240555838	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	1	240555838	240555838	A	C	SNP	FMN2	ENST00000319653	human	ensembl	74_37	+1	known	missense	c.4886	p.N1629T	0.645	pfam_FH2_Formin,smart_FH2_Formin	pfam_FH2_Formin,pfam_Formin_homology_1,smart_FH2_Formin,pfscan_DEP_dom	-	no_errors	FMN2	HGNC	ENSG00000155816				145	0	0	149	15	9.14634
MYOM3	0	genome.wustl.edu	37	1	24418800	24418800	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	1	24418800	24418800	C	T	SNP	MYOM3	ENST00000330966	human	ensembl	74_37	-1	known	missense	c.1099	p.E367K	0.011	NULL	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	MYOM3	HGNC	ENSG00000142661				73	0	0	60	8	11.7647
OR2T12	0	genome.wustl.edu	37	1	248457994	248457994	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	1	248457994	248457994	T	G	SNP	OR2T12	ENST00000317996	human	ensembl	74_37	-1	known	missense	c.887	p.K296T	0.001	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2T12	HGNC	ENSG00000177201				225	0	0	237	16	6.32411
C8A	0	genome.wustl.edu	37	1	57347266	57347266	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	1	57347266	57347266	T	C	SNP	C8A	ENST00000361249	human	ensembl	74_37	+1	known	missense	c.613	p.Y205H	1.000	NULL	pfam_MACPF,pfam_LDrepeatLR_classA_rpt,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,superfamily_LDrepeatLR_classA_rpt,smart_Thrombospondin_1_rpt,smart_LDrepeatLR_classA_rpt,smart_MACPF,pfscan_LDrepeatLR_classA_rpt,pfscan_Thrombospondin_1_rpt,prints_MAC_perforin	-	no_errors	C8A	HGNC	ENSG00000157131				112	0	0	114	15	11.6279
LPHN2	0	genome.wustl.edu	37	1	82302724	82302724	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	1	82302724	82302724	T	G	SNP	LPHN2	ENST00000370717	human	ensembl	74_37	+1	known	missense	c.55	p.F19V	1.000	NULL	pfam_GPCR_2_latrophilin_rcpt_C,pfam_Olfac-like,pfam_DUF3497,pfam_GPCR_2_secretin-like,pfam_Lectin_gal-bd_dom,pfam_GPS_dom,pfam_GPCR_2_extracellular_dom,smart_Olfac-like,smart_GPCR_2_extracellular_dom,smart_GPS_dom,prints_GPCR_2_latrophilin,prints_GPCR_2_secretin-like,pfscan_GPS_dom,pfscan_Lectin_gal-bd_dom,pfscan_Olfac-like,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like	-	no_errors	LPHN2	HGNC	ENSG00000117114				58	0	0	74	4	5.12821
CA6	0	genome.wustl.edu	37	1	9009386	9009386	+	Silent	SNP	G	G	A			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	1	9009386	9009386	G	A	SNP	CA6	ENST00000377443	human	ensembl	74_37	+1	known	silent	c.144	p.S48	0.073	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	-	no_errors	CA6	HGNC	ENSG00000131686				49	0	0	44	4	8.33333
FAM208B	0	genome.wustl.edu	37	10	5766451	5766451	+	Silent	SNP	G	G	A			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	10	5766451	5766451	G	A	SNP	FAM208B	ENST00000328090	human	ensembl	74_37	+1	known	silent	c.306	p.G102	0.321	pfam_DUF3699	pfam_DUF3715,pfam_DUF3699	-	no_errors	FAM208B	HGNC	ENSG00000108021				101	0	0	99	12	10.8108
WAPAL	0	genome.wustl.edu	37	10	88220968	88220968	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	10	88220968	88220968	C	T	SNP	WAPAL	ENST00000298767	human	ensembl	74_37	-1	known	missense	c.2447	p.R816Q	1.000	pfam_WAPL_prot,superfamily_ARM-type_fold	pfam_WAPL_prot,superfamily_ARM-type_fold	-	no_errors	WAPAL	HGNC	ENSG00000062650				170	0	0	137	9	6.16438
KIF20B	0	genome.wustl.edu	37	10	91533796	91533796	+	Silent	SNP	A	A	G			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	10	91533796	91533796	A	G	SNP	KIF20B	ENST00000416354	human	ensembl	74_37	+1	known	silent	c.5544	p.T1848	0.558	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF20B	HGNC	ENSG00000138182				100	0	0	86	5	5.49451
HECTD2	0	genome.wustl.edu	37	10	93250996	93250996	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	10	93250996	93250996	G	A	SNP	HECTD2	ENST00000446394	human	ensembl	74_37	+1	known	missense	c.1243	p.D415N	1.000	superfamily_HECT	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	-	no_errors	HECTD2	HGNC	ENSG00000165338				108	0	0	73	7	8.75
GRIK4	0	genome.wustl.edu	37	11	120811160	120811160	+	Silent	SNP	C	C	T			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	11	120811160	120811160	C	T	SNP	GRIK4	ENST00000527524	human	ensembl	74_37	+1	known	silent	c.1581	p.R527	0.695	pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK4	HGNC	ENSG00000149403				99	0	0	87	16	15.534
OR4C13	0	genome.wustl.edu	37	11	49974468	49974468	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	11	49974468	49974468	C	T	SNP	OR4C13	ENST00000555099	human	ensembl	74_37	+1	known	missense	c.494	p.P165L	0.287	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4C13	HGNC	ENSG00000258817				144	0	0	123	21	14.5833
OR5D13	0	genome.wustl.edu	37	11	55541130	55541130	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	11	55541130	55541130	T	G	SNP	OR5D13	ENST00000361760	human	ensembl	74_37	+1	known	missense	c.217	p.F73V	0.863	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5D13	HGNC	ENSG00000198877				139	1	0.714286	151	14	8.48485
AHNAK	0	genome.wustl.edu	37	11	62299903	62299903	+	Silent	SNP	G	G	A			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	11	62299903	62299903	G	A	SNP	AHNAK	ENST00000378024	human	ensembl	74_37	-1	known	silent	c.1986	p.P662	0.011	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK	HGNC	ENSG00000124942				241	0	0	187	28	13.0233
SLC22A6	0	genome.wustl.edu	37	11	62747361	62747361	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	11	62747361	62747361	C	A	SNP	SLC22A6	ENST00000377871	human	ensembl	74_37	-1	known	missense	c.1097	p.S366I	1.000	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	-	no_errors	SLC22A6	HGNC	ENSG00000197901				72	0	0	53	5	8.62069
ZFPL1	0	genome.wustl.edu	37	11	64854058	64854058	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	11	64854058	64854058	G	A	SNP	ZFPL1	ENST00000294258	human	ensembl	74_37	+1	known	missense	c.386	p.R129Q	1.000	NULL	NULL	-	no_errors	ZFPL1	HGNC	ENSG00000162300				93	0	0	69	14	16.8675
VPS51	0	genome.wustl.edu	37	11	64875710	64875710	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	11	64875710	64875710	A	G	SNP	VPS51	ENST00000279281	human	ensembl	74_37	+1	known	missense	c.767	p.E256G	1.000	superfamily_Cullin_repeat-like_dom	pfam_COG8,pfam_Vacuolar_sorting-assoc_54,pfam_COG_su2_N,pfam_RZZ-complex_Zw10,superfamily_Cullin_repeat-like_dom	-	no_errors	VPS51	HGNC	ENSG00000149823				12	0	0	12	4	25
SLC36A4	0	genome.wustl.edu	37	11	92918925	92918925	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	11	92918925	92918925	A	T	SNP	SLC36A4	ENST00000326402	human	ensembl	74_37	-1	known	missense	c.111	p.D37E	1.000	NULL	pfam_AA_transpt_TM	-	no_errors	SLC36A4	HGNC	ENSG00000180773				89	0	0	95	13	12.037
ANO4	0	genome.wustl.edu	37	12	101520783	101520783	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	12	101520783	101520783	C	T	SNP	ANO4	ENST00000392977	human	ensembl	74_37	+1	known	missense	c.2803	p.R935C	1.000	NULL	pfam_Anoctamin	-	no_errors	ANO4	HGNC	ENSG00000151572				45	0	0	26	5	16.129
TPCN1	0	genome.wustl.edu	37	12	113704147	113704147	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	12	113704147	113704147	C	T	SNP	TPCN1	ENST00000541517	human	ensembl	74_37	+1	known	missense	c.616	p.R206W	1.000	NULL	pfam_Ion_trans_dom	-	no_errors	TPCN1	HGNC	ENSG00000186815				383	0	0	308	50	13.9665
EP400	0	genome.wustl.edu	37	12	132547093	132547093	+	Silent	SNP	A	A	G			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	12	132547093	132547093	A	G	SNP	EP400	ENST00000333577	human	ensembl	74_37	+1	known	silent	c.8289	p.Q2763	0.900	NULL	pfam_SNF2_N,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Homeodomain-like,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Myb-like_dom,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	EP400	HGNC	ENSG00000183495				67	0	0	56	3	5.08475
SLCO1B3	0	genome.wustl.edu	37	12	21028196	21028196	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	12	21028196	21028196	C	A	SNP	SLCO1B3	ENST00000553473	human	ensembl	74_37	+1	known	missense	c.755	p.S252Y	0.969	pfam_OA_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO1B3	HGNC	ENSG00000111700				217	0	0	216	26	10.7438
SLCO1B3	0	genome.wustl.edu	37	12	21051412	21051412	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	12	21051412	21051412	G	C	SNP	SLCO1B3	ENST00000553473	human	ensembl	74_37	+1	known	missense	c.1725	p.Q575H	0.096	pfam_OA_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO1B3	HGNC	ENSG00000111700				72	0	0	78	12	13.3333
CACNA1C	0	genome.wustl.edu	37	12	2558239	2558239	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	12	2558239	2558239	G	A	SNP	CACNA1C	ENST00000399634	human	ensembl	74_37	+1	known	missense	c.575	p.R192H	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCC_L_a1csu,prints_VDCCAlpha1,prints_VDCC_L_a1su	-	no_errors	CACNA1C	HGNC	ENSG00000151067				21	0	0	15	4	21.0526
A2M	0	genome.wustl.edu	37	12	9231877	9231877	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	12	9231877	9231877	A	C	SNP	A2M	ENST00000318602	human	ensembl	74_37	-1	known	missense	c.3082	p.F1028V	1.000	pfam_A2M_comp,superfamily_Terpenoid_cyclase/PrenylTrfase	pfam_A2M_comp,pfam_A2M_N_2,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd,superfamily_Beta-lactam/transpept-like,superfamily_Cupredoxin	-	no_errors	A2M	HGNC	ENSG00000175899				110	0	0	90	5	5.26316
CLLU1OS	0	genome.wustl.edu	37	12	92814941	92814941	+	Silent	SNP	G	G	A			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	12	92814941	92814941	G	A	SNP	CLLU1OS	ENST00000378487	human	ensembl	74_37	-1	known	silent	c.151	p.L51	0.003	NULL	NULL	-	no_errors	CLLU1OS	HGNC	ENSG00000205057				93	0	0	99	13	11.6071
SPG20	0	genome.wustl.edu	37	13	36878722	36878722	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	13	36878722	36878722	G	T	SNP	SPG20	ENST00000355182	human	ensembl	74_37	-1	known	missense	c.1781	p.A594E	1.000	pfam_Senescence/spartin	pfam_Senescence/spartin,pfam_MIT,smart_MIT	-	no_errors	SPG20	HGNC	ENSG00000133104				77	0	0	69	16	18.8235
SMAD9	0	genome.wustl.edu	37	13	37427777	37427777	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	13	37427777	37427777	C	A	SNP	SMAD9	ENST00000379826	human	ensembl	74_37	-1	known	missense	c.1039	p.A347S	1.000	pfam_SMAD_dom_Dwarfin-type,pfam_Interferon_reg_factor-3,superfamily_SMAD_FHA_domain,smart_SMAD_dom_Dwarfin-type,pfscan_SMAD_dom_Dwarfin-type	pfam_SMAD_dom_Dwarfin-type,pfam_MAD_homology1_Dwarfin-type,pfam_Interferon_reg_factor-3,superfamily_SMAD_FHA_domain,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,smart_SMAD_dom_Dwarfin-type,pfscan_MAD_homology_MH1,pfscan_SMAD_dom_Dwarfin-type	-	no_errors	SMAD9	HGNC	ENSG00000120693				56	0	0	44	11	20
PCDH17	0	genome.wustl.edu	37	13	58208453	58208453	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	13	58208453	58208453	C	A	SNP	PCDH17	ENST00000377918	human	ensembl	74_37	+1	known	missense	c.1773	p.D591E	1.000	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH17	HGNC	ENSG00000118946				49	0	0	29	5	14.7059
GPC6	0	genome.wustl.edu	37	13	94938678	94938678	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	13	94938678	94938678	A	G	SNP	GPC6	ENST00000377047	human	ensembl	74_37	+1	known	missense	c.953	p.K318R	1.000	pfam_Glypican	pfam_Glypican	-	no_errors	GPC6	HGNC	ENSG00000183098				70	0	0	51	11	17.7419
SLC25A29	0	genome.wustl.edu	37	14	100765194	100765194	+	Silent	SNP	C	C	T			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	14	100765194	100765194	C	T	SNP	SLC25A29	ENST00000359232	human	ensembl	74_37	-1	known	silent	c.63	p.P21	0.029	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	-	no_errors	SLC25A29	HGNC	ENSG00000197119				77	0	0	42	7	14.2857
ZNF219	0	genome.wustl.edu	37	14	21560052	21560052	+	Silent	SNP	C	C	G			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	14	21560052	21560052	C	G	SNP	ZNF219	ENST00000360947	human	ensembl	74_37	-1	known	silent	c.1404	p.G468	0.999	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2,prints_Histamine_H3_rcpt	-	no_errors	ZNF219	HGNC	ENSG00000165804				36	0	0	31	5	13.8889
OR10G2	0	genome.wustl.edu	37	14	22102378	22102378	+	Silent	SNP	G	G	A			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	14	22102378	22102378	G	A	SNP	OR10G2	ENST00000542433	human	ensembl	74_37	-1	known	silent	c.621	p.D207	0.885	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10G2	HGNC	ENSG00000255582				66	0	0	51	8	13.5593
FITM1	0	genome.wustl.edu	37	14	24601699	24601699	+	Silent	SNP	C	C	T			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	14	24601699	24601699	C	T	SNP	FITM1	ENST00000267426	human	ensembl	74_37	+1	known	silent	c.546	p.T182	0.005	pfam_FIT	pfam_FIT	-	no_errors	FITM1	HGNC	ENSG00000139914				76	0	0	64	11	14.6667
SLC25A21	0	genome.wustl.edu	37	14	37180670	37180670	+	Silent	SNP	A	A	C			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	14	37180670	37180670	A	C	SNP	SLC25A21	ENST00000331299	human	ensembl	74_37	-1	known	silent	c.456	p.G152	0.050	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	-	no_errors	SLC25A21	HGNC	ENSG00000183032				81	0	0	72	12	14.2857
ZFYVE1	0	genome.wustl.edu	37	14	73459882	73459882	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	14	73459882	73459882	C	T	SNP	ZFYVE1	ENST00000553891	human	ensembl	74_37	-1	known	missense	c.1172	p.R391Q	1.000	superfamily_Growth_fac_rcpt_N_dom	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,superfamily_P-loop_NTPase,superfamily_Growth_fac_rcpt_N_dom,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	-	no_errors	ZFYVE1	HGNC	ENSG00000165861				79	0	0	71	9	11.25
YLPM1	0	genome.wustl.edu	37	14	75248531	75248531	+	Silent	SNP	C	C	T			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	14	75248531	75248531	C	T	SNP	YLPM1	ENST00000325680	human	ensembl	74_37	+1	known	silent	c.1785	p.S595	0.997	NULL	superfamily_P-loop_NTPase	-	no_errors	YLPM1	HGNC	ENSG00000119596				112	0	0	123	14	10.219
HERC2	0	genome.wustl.edu	37	15	28459817	28459817	+	Silent	SNP	G	G	A			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	15	28459817	28459817	G	A	SNP	HERC2	ENST00000261609	human	ensembl	74_37	-1	known	silent	c.6342	p.D2114	0.147	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5-like_heme/steroid-bd,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_RCC1/BLIP-II,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5-like_heme/steroid-bd,superfamily_UBA-like,superfamily_CUB_dom,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5-like_heme/steroid-bd,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731				49	0	0	51	3	5.55556
DISP2	0	genome.wustl.edu	37	15	40661112	40661112	+	Silent	SNP	G	G	A			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	15	40661112	40661112	G	A	SNP	DISP2	ENST00000267889	human	ensembl	74_37	+1	known	silent	c.2799	p.A933	0.000	NULL	pfscan_SSD	-	no_errors	DISP2	HGNC	ENSG00000140323				110	0	0	69	21	23.3333
PRKCB	0	genome.wustl.edu	37	16	24226123	24226123	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	16	24226123	24226123	G	A	SNP	PRKCB	ENST00000303531	human	ensembl	74_37	+1	known	missense	c.2008	p.E670K	1.000	pirsf_Protein_kinase_C_a/b/g	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_C2_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Protein_kinase_C_a/b/g,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_DAG/PE-bd,prints_C2_dom	-	no_errors	PRKCB	HGNC	ENSG00000166501				126	0	0	121	8	6.20155
AQP8	0	genome.wustl.edu	37	16	25235898	25235898	+	Splice_Site	SNP	G	G	A			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	16	25235898	25235898	G	A	SNP	AQP8	ENST00000219660	human	ensembl	74_37	+1	known	splice_site	c.602+1	e4+1	1.000	-	-	-	no_errors	AQP8	HGNC	ENSG00000103375				30	0	0	17	4	19.0476
SLC7A6OS	0	genome.wustl.edu	37	16	68344764	68344764	+	Silent	SNP	A	A	C			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	16	68344764	68344764	A	C	SNP	SLC7A6OS	ENST00000263997	human	ensembl	74_37	-1	known	silent	c.66	p.A22	0.008	NULL	NULL	-	no_errors	SLC7A6OS	HGNC	ENSG00000103061				23	0	0	15	4	21.0526
COG8	0	genome.wustl.edu	37	16	69366758	69366758	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	16	69366758	69366758	G	A	SNP	COG8	ENST00000306875	human	ensembl	74_37	-1	known	missense	c.1441	p.R481C	1.000	pirsf_COG8_Metazoal_Plant	pfam_COG8,superfamily_Cullin_repeat-like_dom,pirsf_COG8_Metazoal_Plant	-	no_errors	COG8	HGNC	ENSG00000213380				79	0	0	66	4	5.71429
GLG1	0	genome.wustl.edu	37	16	74487204	74487204	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	16	74487204	74487204	A	T	SNP	GLG1	ENST00000205061	human	ensembl	74_37	-1	known	missense	c.3401	p.L1134H	1.000	NULL	pfam_Cys-rich_GLG1_repeat	-	no_errors	GLG1	HGNC	ENSG00000090863				60	0	0	54	5	8.47458
KRT28	0	genome.wustl.edu	37	17	38953225	38953225	+	Silent	SNP	G	G	A			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	17	38953225	38953225	G	A	SNP	KRT28	ENST00000306658	human	ensembl	74_37	-1	known	silent	c.921	p.T307	0.002	pfam_IF,superfamily_Prefoldin	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT28	HGNC	ENSG00000173908				101	0	0	88	5	5.37634
STAT3	0	genome.wustl.edu	37	17	40485746	40485746	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	17	40485746	40485746	G	A	SNP	STAT3	ENST00000264657	human	ensembl	74_37	-1	known	missense	c.994	p.H332Y	1.000	pfam_STAT_TF_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,pfscan_SH2	-	no_errors	STAT3	HGNC	ENSG00000168610				73	0	0	71	5	6.57895
ACBD4	0	genome.wustl.edu	37	17	43213915	43213915	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	17	43213915	43213915	A	G	SNP	ACBD4	ENST00000431281	human	ensembl	74_37	+1	known	missense	c.137	p.Y46C	1.000	pfam_Acyl-CoA-binding_protein,superfamily_Acyl-CoA-binding_protein,prints_Acyl-CoA-binding_protein	pfam_Acyl-CoA-binding_protein,superfamily_Acyl-CoA-binding_protein,prints_Acyl-CoA-binding_protein	-	no_errors	ACBD4	HGNC	ENSG00000181513				155	0	0	102	23	18.4
GPRC5C	0	genome.wustl.edu	37	17	72436661	72436661	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	17	72436661	72436661	C	A	SNP	GPRC5C	ENST00000392627	human	ensembl	74_37	+1	known	missense	c.881	p.T294K	0.376	pfam_GPCR_3_C,pfscan_GPCR_3_C	pfam_GPCR_3_C,pfscan_GPCR_3_C	-	no_errors	GPRC5C	HGNC	ENSG00000170412				79	0	0	55	8	12.6984
C17orf77	0	genome.wustl.edu	37	17	72588200	72588200	+	Silent	SNP	G	G	A			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	17	72588200	72588200	G	A	SNP	C17orf77	ENST00000328023	human	ensembl	74_37	+1	known	silent	c.15	p.A5	0.000	NULL	NULL	-	no_errors	C17orf77	HGNC	ENSG00000182352				181	0	0	197	11	5.28846
TP53	0	genome.wustl.edu	37	17	7577022	7577022	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	17	7577022	7577022	G	A	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	nonsense	c.916	p.R306*	1.000	NULL	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510				104	0	0	76	15	16.4835
DSEL	0	genome.wustl.edu	37	18	65180695	65180695	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	18	65180695	65180695	G	A	SNP	DSEL	ENST00000310045	human	ensembl	74_37	-1	known	missense	c.1181	p.T394I	1.000	NULL	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,superfamily_Chondroitin_lyas	-	no_errors	DSEL	HGNC	ENSG00000171451				89	0	0	64	10	13.5135
CDC37	0	genome.wustl.edu	37	19	10505732	10505732	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	19	10505732	10505732	G	A	SNP	CDC37	ENST00000222005	human	ensembl	74_37	-1	known	missense	c.691	p.R231W	1.000	pfam_Cdc37_Hsp90-bd	pfam_Cdc37_Hsp90-bd,pfam_Cdc37_N_dom,pfam_Cdc37_C	-	no_errors	CDC37	HGNC	ENSG00000105401				96	0	0	95	5	5
CPAMD8	0	genome.wustl.edu	37	19	17008738	17008738	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	19	17008738	17008738	G	A	SNP	CPAMD8	ENST00000443236	human	ensembl	74_37	-1	known	missense	c.5057	p.S1686L	0.993	pfam_A-macroglobulin_rcpt-bd,superfamily_A-macroglobulin_rcpt-bd	pfam_A2M_comp,pfam_A2M_N_2,pfam_Methyltransf_FA,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_Kazal_dom,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd,smart_Kazal_dom	-	no_errors	CPAMD8	HGNC	ENSG00000160111				40	0	0	22	4	15.3846
DDX49	0	genome.wustl.edu	37	19	19035507	19035507	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	19	19035507	19035507	C	T	SNP	DDX49	ENST00000247003	human	ensembl	74_37	+1	known	missense	c.928	p.R310W	1.000	pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_C,pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX49	HGNC	ENSG00000105671				90	0	0	63	9	12.5
URI1	0	genome.wustl.edu	37	19	30502064	30502064	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	19	30502064	30502064	C	T	SNP	URI1	ENST00000542441	human	ensembl	74_37	+1	known	missense	c.1099	p.R367C	1.000	NULL	pfam_Prefoldin_subunit_alpha,superfamily_Prefoldin	-	no_errors	URI1	HGNC	ENSG00000105176				125	0	0	134	15	10.0671
ZNF568	0	genome.wustl.edu	37	19	37440970	37440970	+	Silent	SNP	T	T	G			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	19	37440970	37440970	T	G	SNP	ZNF568	ENST00000333987	human	ensembl	74_37	+1	known	silent	c.915	p.P305	0.084	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF568	HGNC	ENSG00000198453				43	0	0	54	5	8.47458
LYPD4	0	genome.wustl.edu	37	19	42343074	42343074	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	19	42343074	42343074	T	C	SNP	LYPD4	ENST00000330743	human	ensembl	74_37	-1	known	missense	c.92	p.E31G	0.999	NULL	pfam_LY6_UPAR	-	no_errors	LYPD4	HGNC	ENSG00000183103				165	0	0	131	12	8.39161
ATP1A3	0	genome.wustl.edu	37	19	42471430	42471430	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	19	42471430	42471430	C	T	SNP	ATP1A3	ENST00000302102	human	ensembl	74_37	-1	known	missense	c.2984	p.R995H	1.000	pfam_ATPase_P-typ_cation-transptr_C,tigrfam_ATPase_P-typ_Na/K_IIC	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP1A3	HGNC	ENSG00000105409				59	0	0	56	5	8.19672
ZNF813	0	genome.wustl.edu	37	19	53995030	53995030	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	19	53995030	53995030	G	T	SNP	ZNF813	ENST00000396403	human	ensembl	74_37	+1	known	missense	c.1544	p.R515I	0.188	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF813	HGNC	ENSG00000198346				49	0	0	56	4	6.66667
LILRA3	0	genome.wustl.edu	37	19	54803095	54803095	+	Silent	SNP	C	C	T			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	19	54803095	54803095	C	T	SNP	LILRA3	ENST00000251390	human	ensembl	74_37	-1	known	silent	c.582	p.S194	0.000	pirsf_A1B_glyco/leuk_Ig-like_rcpt	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pirsf_A1B_glyco/leuk_Ig-like_rcpt,pfscan_Ig-like_dom	-	no_errors	LILRA3	HGNC	ENSG00000170866				153	1	0.649351	137	20	12.7389
MUC16	0	genome.wustl.edu	37	19	9047473	9047473	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	19	9047473	9047473	T	G	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.34158	p.E11386D	0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				232	0	0	166	29	14.8718
PXDN	0	genome.wustl.edu	37	2	1652393	1652393	+	Silent	SNP	G	G	A			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	2	1652393	1652393	G	A	SNP	PXDN	ENST00000252804	human	ensembl	74_37	-1	known	silent	c.3159	p.Y1053	0.998	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like_dom	-	no_errors	PXDN	HGNC	ENSG00000130508				30	0	0	14	4	22.2222
CPS1	0	genome.wustl.edu	37	2	211465372	211465372	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	2	211465372	211465372	A	C	SNP	CPS1	ENST00000430249	human	ensembl	74_37	+1	known	missense	c.1661	p.Q554P	1.000	pfam_CbamoylP_synth_lsu-like_ATP-bd,superfamily_PreATP-grasp_dom,tigrfam_CarbamoylP_synth_lsu	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_ssu_N,pfam_CarbamoylP_synth_lsu_oligo,pfam_GATASE,pfam_CarbamoylP_synth_lsu_N,pfam_MGS-like_dom,pfam_ATP-grasp_carboxylate-amine,pfam_Dala_Dala_lig_C,superfamily_CarbamoylP_synth_lsu_oligo,superfamily_CarbamoylP_synth_ssu_N,superfamily_PreATP-grasp_dom,superfamily_MGS-like_dom,smart_MGS-like_dom,pfscan_ATP-grasp,prints_CbamoylP_synth_lsu_CPSase_dom,tigrfam_CarbamoylP_synth_lsu,tigrfam_CarbamoylP_synth_ssu	-	no_errors	CPS1	HGNC	ENSG00000021826				131	0	0	144	17	10.559
DOCK10	0	genome.wustl.edu	37	2	225688336	225688336	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	2	225688336	225688336	G	T	SNP	DOCK10	ENST00000258390	human	ensembl	74_37	-1	known	missense	c.3065	p.S1022Y	1.000	superfamily_ARM-type_fold	pfam_DOCK_C,pfam_DOCK_C/D_N,pfam_Pleckstrin_homology,superfamily_ARM-type_fold,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK10	HGNC	ENSG00000135905				125	0	0	121	7	5.46875
TMEM131	0	genome.wustl.edu	37	2	98392446	98392446	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	2	98392446	98392446	G	A	SNP	TMEM131	ENST00000186436	human	ensembl	74_37	-1	known	missense	c.4180	p.P1394S	0.801	NULL	pfam_DUF3651_TMEM131	-	no_errors	TMEM131	HGNC	ENSG00000075568				114	0	0	91	18	16.5138
APMAP	0	genome.wustl.edu	37	20	24954292	24954292	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	20	24954292	24954292	G	A	SNP	APMAP	ENST00000217456	human	ensembl	74_37	-1	known	missense	c.410	p.S137L	0.302	NULL	pfam_Strictosidine_synth_cons-reg,pfam_SGL	-	no_errors	APMAP	HGNC	ENSG00000101474				69	0	0	62	7	10.1449
PCED1A	0	genome.wustl.edu	37	20	2818920	2818920	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	20	2818920	2818920	C	T	SNP	PCED1A	ENST00000360652	human	ensembl	74_37	-1	known	missense	c.799	p.D267N	0.977	NULL	NULL	-	no_errors	PCED1A	HGNC	ENSG00000132635				101	0	0	85	10	10.5263
SIGLEC1	0	genome.wustl.edu	37	20	3674309	3674309	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	20	3674309	3674309	C	T	SNP	SIGLEC1	ENST00000344754	human	ensembl	74_37	-1	known	missense	c.3293	p.R1098Q	0.494	smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	SIGLEC1	HGNC	ENSG00000088827				71	0	0	53	6	10.1695
MYBL2	0	genome.wustl.edu	37	20	42344707	42344707	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	20	42344707	42344707	C	T	SNP	MYBL2	ENST00000217026	human	ensembl	74_37	+1	known	missense	c.2083	p.R695W	1.000	NULL	pfam_C-myb_C,pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	MYBL2	HGNC	ENSG00000101057				198	0	0	208	25	10.7296
EEF1A2	0	genome.wustl.edu	37	20	62126325	62126325	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	20	62126325	62126325	C	T	SNP	EEF1A2	ENST00000217182	human	ensembl	74_37	-1	known	missense	c.454	p.V152M	0.982	pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,prints_EF_GTP-bd_dom,tigrfam_Transl_elong_EF1A_euk/arc	pfam_EF_GTP-bd_dom,pfam_Transl_elong_EFTu/EF1A_C,pfam_Transl_elong_EFTu/EF1A_2,superfamily_P-loop_NTPase,superfamily_Transl_elong_EF1A/Init_IF2_C,superfamily_Transl_B-barrel,prints_EF_GTP-bd_dom,tigrfam_Transl_elong_EF1A_euk/arc	-	no_errors	EEF1A2	HGNC	ENSG00000101210				123	0	0	93	10	9.70874
ARFRP1	0	genome.wustl.edu	37	20	62331793	62331793	+	RNA	SNP	G	G	C			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	20	62331793	62331793	G	C	SNP	ARFRP1	ENST00000485858	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ARFRP1	HGNC	ENSG00000101246				46	0	0	54	5	8.47458
ZDHHC8	0	genome.wustl.edu	37	22	20130417	20130417	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	22	20130417	20130417	G	A	SNP	ZDHHC8	ENST00000405930	human	ensembl	74_37	+1	known	missense	c.1264	p.A422T	0.871	NULL	pfam_Znf_DHHC_palmitoyltrfase,superfamily_Plexin-like_fold,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC8	HGNC	ENSG00000099904				24	0	0	20	6	23.0769
PFKFB4	0	genome.wustl.edu	37	3	48587369	48587369	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	3	48587369	48587369	C	T	SNP	PFKFB4	ENST00000232375	human	ensembl	74_37	-1	known	missense	c.239	p.R80Q	1.000	pfam_6Phosfructo_kin,superfamily_P-loop_NTPase,pirsf_Bifunct_6PFK/fruc_bisP_Ptase	pfam_6Phosfructo_kin,pfam_His_Pase_superF_clade-1,superfamily_P-loop_NTPase,smart_His_Pase_superF_clade-1,pirsf_Bifunct_6PFK/fruc_bisP_Ptase,prints_6Pfruct_kin	-	no_errors	PFKFB4	HGNC	ENSG00000114268				87	0	0	69	9	11.5385
QARS	0	genome.wustl.edu	37	3	49139687	49139687	+	Silent	SNP	A	A	C			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	3	49139687	49139687	A	C	SNP	QARS	ENST00000306125	human	ensembl	74_37	-1	known	silent	c.582	p.A194	0.022	pfam_Gln-tRNA-synth_Ib_RNA-bd_2	pfam_Glu/Gln-tRNA-synth_Ib_cat-dom,pfam_Gln-tRNA-synth_Ib_RNA-bd_N,pfam_Glu/Gln-tRNA-synth_Ib_codon-bd,pfam_Gln-tRNA-synth_Ib_RNA-bd_2,superfamily_Ribosomal_L25/Gln-tRNA_synth,prints_Glu/Gln-tRNA-synth,tigrfam_Gln-tRNA-synth	-	no_errors	QARS	HGNC	ENSG00000172053				357	0	0	271	43	13.6943
VPRBP	0	genome.wustl.edu	37	3	51457862	51457862	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	3	51457862	51457862	T	C	SNP	VPRBP	ENST00000335891	human	ensembl	74_37	-1	known	missense	c.1215	p.I405M	0.934	superfamily_ARM-type_fold,smart_LisH_dimerisation,pfscan_LisH_dimerisation	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_LisH_dimerisation,pfscan_LisH_dimerisation	-	no_errors	VPRBP	HGNC	ENSG00000145041				82	0	0	69	6	8
SNTN	0	genome.wustl.edu	37	3	63638466	63638466	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	3	63638466	63638466	C	T	SNP	SNTN	ENST00000343837	human	ensembl	74_37	+1	known	missense	c.103	p.P35S	0.995	NULL	NULL	-	no_errors	SNTN	HGNC	ENSG00000188817				56	0	0	46	15	24.5902
ARL13B	0	genome.wustl.edu	37	3	93758757	93758757	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	3	93758757	93758757	T	G	SNP	ARL13B	ENST00000394222	human	ensembl	74_37	+1	known	missense	c.723	p.D241E	0.880	NULL	pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,pfam_SRP_receptor_beta_su,superfamily_P-loop_NTPase,smart_Small_GTPase_ARF,smart_Small_GTPase_SAR1,prints_Small_GTPase_ARF/SAR,tigrfam_Small_GTP-bd_dom	-	no_errors	ARL13B	HGNC	ENSG00000169379				61	0	0	47	5	9.61538
KIAA1109	0	genome.wustl.edu	37	4	123252486	123252486	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	4	123252486	123252486	C	T	SNP	KIAA1109	ENST00000264501	human	ensembl	74_37	+1	known	missense	c.11255	p.T3752M	0.388	NULL	pfam_Fragile_site-assoc_C	-	no_errors	KIAA1109	HGNC	ENSG00000138688				22	0	0	21	6	22.2222
FAT4	0	genome.wustl.edu	37	4	126241072	126241072	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	4	126241072	126241072	G	A	SNP	FAT4	ENST00000394329	human	ensembl	74_37	+1	known	missense	c.3506	p.R1169Q	0.998	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159				187	1	0.531915	186	14	7
ZNF827	0	genome.wustl.edu	37	4	146806888	146806888	+	Silent	SNP	T	T	C			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	4	146806888	146806888	T	C	SNP	ZNF827	ENST00000508784	human	ensembl	74_37	-1	known	silent	c.1689	p.A563	0.976	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF827	HGNC	ENSG00000151612				103	0	0	104	7	6.30631
NPY1R	0	genome.wustl.edu	37	4	164246633	164246633	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	4	164246633	164246633	T	G	SNP	NPY1R	ENST00000296533	human	ensembl	74_37	-1	known	missense	c.977	p.N326T	1.000	pfam_7TM_GPCR_olfarory/Srsx,prints_NPY1_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_Glucose_rcpt_Git3_N,pfscan_GPCR_Rhodpsn_7TM,prints_NPY1_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	NPY1R	HGNC	ENSG00000164128				121	0	0	124	10	7.46269
LDB2	0	genome.wustl.edu	37	4	16587554	16587554	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	4	16587554	16587554	G	C	SNP	LDB2	ENST00000304523	human	ensembl	74_37	-1	known	missense	c.606	p.N202K	1.000	NULL	NULL	-	no_errors	LDB2	HGNC	ENSG00000169744				138	0	0	103	18	14.876
SPATA18	0	genome.wustl.edu	37	4	52926960	52926960	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	4	52926960	52926960	A	T	SNP	SPATA18	ENST00000295213	human	ensembl	74_37	+1	known	missense	c.206	p.D69V	0.082	NULL	NULL	-	no_errors	SPATA18	HGNC	ENSG00000163071				97	0	0	81	9	10
KDR	0	genome.wustl.edu	37	4	55968591	55968591	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	4	55968591	55968591	G	T	SNP	KDR	ENST00000263923	human	ensembl	74_37	-1	known	missense	c.2072	p.S691Y	0.994	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Prot_kinase_dom,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_VEGFR2_rcpt	-	no_errors	KDR	HGNC	ENSG00000128052				135	0	0	114	10	8.06452
SLC25A46	0	genome.wustl.edu	37	5	110097216	110097216	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	5	110097216	110097216	C	G	SNP	SLC25A46	ENST00000355943	human	ensembl	74_37	+1	known	missense	c.991	p.L331V	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	SLC25A46	HGNC	ENSG00000164209				259	0	0	269	24	8.19113
CDH18	0	genome.wustl.edu	37	5	19839105	19839105	+	RNA	SNP	A	A	C			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	5	19839105	19839105	A	C	SNP	CDH18	ENST00000511423	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.729	-	-	-	no_errors	CDH18	HGNC	ENSG00000145526				52	0	0	57	9	13.6364
PRDM9	0	genome.wustl.edu	37	5	23522743	23522743	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	5	23522743	23522743	T	G	SNP	PRDM9	ENST00000296682	human	ensembl	74_37	+1	known	missense	c.631	p.F211V	0.992	NULL	pfam_Znf_C2H2,pfam_SSXRD_motif,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	PRDM9	HGNC	ENSG00000164256				61	0	0	42	5	10.6383
ERBB2IP	0	genome.wustl.edu	37	5	65288678	65288678	+	Silent	SNP	T	T	C			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	5	65288678	65288678	T	C	SNP	ERBB2IP	ENST00000284037	human	ensembl	74_37	+1	known	silent	c.132	p.F44	1.000	NULL	pfam_Leu-rich_rpt,pfam_PDZ,superfamily_PDZ,smart_Leu-rich_rpt_typical-subtyp,smart_PDZ,pfscan_PDZ	-	no_errors	ERBB2IP	HGNC	ENSG00000112851				81	0	0	74	5	6.32911
GPR98	0	genome.wustl.edu	37	5	89954028	89954028	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	5	89954028	89954028	G	T	SNP	GPR98	ENST00000405460	human	ensembl	74_37	+1	known	missense	c.4685	p.R1562I	0.476	NULL	pfam_Calx_beta,pfam_EPTP,pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Gal_Oxase/kelch_b-propeller,smart_Calx_beta,pfscan_EAR,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR98	HGNC	ENSG00000164199				112	0	0	115	12	9.44882
FAM81B	0	genome.wustl.edu	37	5	94764400	94764400	+	Silent	SNP	C	C	T			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	5	94764400	94764400	C	T	SNP	FAM81B	ENST00000283357	human	ensembl	74_37	+1	known	silent	c.750	p.P250	0.075	NULL	NULL	-	no_errors	FAM81B	HGNC	ENSG00000153347				138	0	0	136	15	9.93377
UTRN	0	genome.wustl.edu	37	6	144811268	144811268	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	6	144811268	144811268	G	A	SNP	UTRN	ENST00000367545	human	ensembl	74_37	+1	known	missense	c.4196	p.R1399H	0.053	pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_dom,superfamily_CH-domain,superfamily_WW_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_dom,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_dom,pfscan_Znf_ZZ	-	no_errors	UTRN	HGNC	ENSG00000152818				149	0	0	114	13	10.2362
PPIL4	0	genome.wustl.edu	37	6	149826767	149826767	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	6	149826767	149826767	T	C	SNP	PPIL4	ENST00000253329	human	ensembl	74_37	-1	known	missense	c.1301	p.K434R	1.000	NULL	pfam_Cyclophilin-like_PPIase_dom,pfam_RRM_dom,superfamily_Cyclophilin-like_PPIase_dom,smart_RRM_dom,pfscan_RRM_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	PPIL4	HGNC	ENSG00000131013				112	0	0	92	8	8
LPA	0	genome.wustl.edu	37	6	161010612	161010612	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	6	161010612	161010612	T	C	SNP	LPA	ENST00000316300	human	ensembl	74_37	-1	known	missense	c.3920	p.Q1307R	0.000	pfam_Kringle,superfamily_Kringle-like,smart_Kringle,pfscan_Kringle	pfam_Kringle,pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,superfamily_Kringle-like,smart_Kringle,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_Kringle,pfscan_Peptidase_S1	-	no_errors	LPA	HGNC	ENSG00000198670				100	0	0	83	9	9.78261
NUP153	0	genome.wustl.edu	37	6	17629488	17629488	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	6	17629488	17629488	A	C	SNP	NUP153	ENST00000537253	human	ensembl	74_37	-1	known	missense	c.3035	p.F1012C	1.000	NULL	pfam_Nucleoporin_Nup153,pfam_Znf_RanBP2,pfam_Retro-transposon_transp_CS,smart_Znf_RanBP2,pfscan_Znf_RanBP2	-	no_errors	NUP153	HGNC	ENSG00000124789				86	0	0	58	7	10.7692
ATAT1	0	genome.wustl.edu	37	6	30610778	30610778	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	6	30610778	30610778	C	T	SNP	ATAT1	ENST00000376485	human	ensembl	74_37	+1	known	missense	c.958	p.R320C	0.984	NULL	pfam_Alpha-TAT,superfamily_Acyl_CoA_acyltransferase	-	no_errors	ATAT1	HGNC	ENSG00000137343				143	0	0	152	18	10.5882
BRD2	0	genome.wustl.edu	37	6	32945244	32945244	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	6	32945244	32945244	G	T	SNP	BRD2	ENST00000395289	human	ensembl	74_37	+1	known	missense	c.1226	p.R409L	1.000	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRD2	HGNC	ENSG00000204256				192	0	0	153	25	14.0449
DUSP22	0	genome.wustl.edu	37	6	345906	345906	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	6	345906	345906	G	A	SNP	DUSP22	ENST00000419235	human	ensembl	74_37	+1	known	missense	c.241	p.G81S	0.996	pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Dual-sp_phosphatase_subgr_cat,prints_Atypical_DUSP,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	DUSP22	HGNC	ENSG00000112679				155	0	0	128	8	5.88235
KCNK5	0	genome.wustl.edu	37	6	39159379	39159379	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	6	39159379	39159379	G	A	SNP	KCNK5	ENST00000359534	human	ensembl	74_37	-1	known	missense	c.787	p.R263W	0.997	NULL	pfam_2pore_dom_K_chnl_dom,prints_2pore_dom_K_chnl,prints_2pore_dom_K_chnl_TASK	-	no_errors	KCNK5	HGNC	ENSG00000164626				155	0	0	134	20	12.987
SLC13A1	0	genome.wustl.edu	37	7	122765669	122765669	+	Silent	SNP	A	A	G			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	7	122765669	122765669	A	G	SNP	SLC13A1	ENST00000194130	human	ensembl	74_37	-1	known	silent	c.1194	p.L398	0.373	pfam_Na/sul_symport,pfam_Cit_transptr-like_dom	pfam_Na/sul_symport,pfam_Cit_transptr-like_dom	-	no_errors	SLC13A1	HGNC	ENSG00000081800				199	0	0	191	20	9.47867
PRSS3P2	0	genome.wustl.edu	37	7	142481342	142481342	+	RNA	SNP	G	G	C			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	7	142481342	142481342	G	C	SNP	PRSS3P2	ENST00000603901	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	PRSS3P2	HGNC	ENSG00000250606				26	0	0	15	4	21.0526
OR2F1	0	genome.wustl.edu	37	7	143657178	143657178	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	7	143657178	143657178	G	A	SNP	OR2F1	ENST00000392899	human	ensembl	74_37	+1	known	missense	c.115	p.V39M	0.130	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2F1	HGNC	ENSG00000213215				338	0	0	283	22	7.21311
ABCB5	0	genome.wustl.edu	37	7	20685666	20685666	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	7	20685666	20685666	T	G	SNP	ABCB5	ENST00000404938	human	ensembl	74_37	+1	putative	missense	c.886	p.F296V	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,pfam_ABC_ATPase_put,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCB5	HGNC	ENSG00000004846				92	0	0	83	13	13.5417
CDK13	0	genome.wustl.edu	37	7	40132537	40132537	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	7	40132537	40132537	A	T	SNP	CDK13	ENST00000181839	human	ensembl	74_37	+1	known	missense	c.3389	p.N1130I	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDK13	HGNC	ENSG00000065883				112	0	0	94	13	12.1495
GLI3	0	genome.wustl.edu	37	7	42004616	42004616	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	7	42004616	42004616	G	T	SNP	GLI3	ENST00000395925	human	ensembl	74_37	-1	known	nonsense	c.4055	p.S1352*	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI3	HGNC	ENSG00000106571				61	0	0	42	6	12.5
POLD2	0	genome.wustl.edu	37	7	44157562	44157562	+	Silent	SNP	G	G	A			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	7	44157562	44157562	G	A	SNP	POLD2	ENST00000406581	human	ensembl	74_37	-1	known	silent	c.322	p.L108	1.000	NULL	pfam_DNA_pol_alpha/epsilon_bsu	-	no_errors	POLD2	HGNC	ENSG00000106628				81	0	0	75	10	11.7647
ANGPT1	0	genome.wustl.edu	37	8	108306233	108306233	+	Silent	SNP	A	A	T			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	8	108306233	108306233	A	T	SNP	ANGPT1	ENST00000517746	human	ensembl	74_37	-1	known	silent	c.969	p.G323	0.894	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	-	no_errors	ANGPT1	HGNC	ENSG00000154188				101	0	0	117	9	7.14286
CSMD3	0	genome.wustl.edu	37	8	113317004	113317004	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	8	113317004	113317004	C	T	SNP	CSMD3	ENST00000297405	human	ensembl	74_37	-1	known	missense	c.8212	p.E2738K	1.000	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796				78	0	0	66	30	31.25
CSMD3	0	genome.wustl.edu	37	8	113318286	113318286	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	8	113318286	113318286	C	A	SNP	CSMD3	ENST00000297405	human	ensembl	74_37	-1	known	missense	c.8021	p.C2674F	1.000	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796				147	0	0	183	10	5.18135
ADCY8	0	genome.wustl.edu	37	8	132052057	132052057	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	8	132052057	132052057	A	C	SNP	ADCY8	ENST00000286355	human	ensembl	74_37	-1	known	missense	c.523	p.L175V	1.000	NULL	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY8	HGNC	ENSG00000155897				62	0	0	68	5	6.84932
DLC1	0	genome.wustl.edu	37	8	13258989	13258989	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	8	13258989	13258989	C	T	SNP	DLC1	ENST00000276297	human	ensembl	74_37	-1	known	missense	c.1163	p.R388Q	0.995	NULL	pfam_START_lipid-bd_dom,pfam_RhoGAP_dom,pfam_SAM_2,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,smart_START_lipid-bd_dom,pfscan_START_lipid-bd_dom,pfscan_RhoGAP_dom	-	no_errors	DLC1	HGNC	ENSG00000164741				61	0	0	73	18	19.7802
TONSL	0	genome.wustl.edu	37	8	145661049	145661049	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	8	145661049	145661049	G	A	SNP	TONSL	ENST00000409379	human	ensembl	74_37	-1	known	nonsense	c.2767	p.Q923*	0.058	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_TPR_repeat,smart_Ankyrin_rpt,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR-contain_dom,prints_Ankyrin_rpt	-	no_errors	TONSL	HGNC	ENSG00000160949				66	0	0	46	6	11.5385
TUSC3	0	genome.wustl.edu	37	8	15480646	15480646	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	8	15480646	15480646	T	G	SNP	TUSC3	ENST00000503731	human	ensembl	74_37	+1	known	missense	c.196	p.F66V	1.000	superfamily_Thioredoxin-like_fold	pfam_OligosaccharylTrfase_OST3/OST6,pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	-	no_errors	TUSC3	HGNC	ENSG00000104723				87	0	0	110	15	12
CSMD1	0	genome.wustl.edu	37	8	3200843	3200843	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	8	3200843	3200843	C	T	SNP	CSMD1	ENST00000520002	human	ensembl	74_37	-1	known	missense	c.3607	p.D1203N	0.226	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD1	HGNC	ENSG00000183117				103	0	0	71	5	6.57895
ZMAT4	0	genome.wustl.edu	37	8	40625183	40625183	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	8	40625183	40625183	C	A	SNP	ZMAT4	ENST00000297737	human	ensembl	74_37	-1	known	missense	c.169	p.A57S	1.000	NULL	pfam_Znf_C2H2_jaz,smart_Znf_U1,smart_Znf_C2H2-like	-	no_errors	ZMAT4	HGNC	ENSG00000165061				51	0	0	57	5	8.06452
RP1	0	genome.wustl.edu	37	8	55541424	55541424	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	8	55541424	55541424	C	G	SNP	RP1	ENST00000220676	human	ensembl	74_37	+1	known	missense	c.4982	p.S1661C	0.611	NULL	pfam_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1	HGNC	ENSG00000104237				198	0	0	185	15	7.5
RMDN1	0	genome.wustl.edu	37	8	87491204	87491204	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	8	87491204	87491204	C	T	SNP	RMDN1	ENST00000406452	human	ensembl	74_37	-1	known	missense	c.677	p.R226K	1.000	NULL	NULL	-	no_errors	RMDN1	HGNC	ENSG00000176623				205	1	0.485437	173	60	25.7511
SDC2	0	genome.wustl.edu	37	8	97614693	97614693	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	8	97614693	97614693	T	G	SNP	SDC2	ENST00000302190	human	ensembl	74_37	+1	known	missense	c.243	p.S81R	0.985	pfam_Syndecan/Neurexin_dom	pfam_Syndecan/Neurexin_dom,smart_Neurexin-like	-	no_errors	SDC2	HGNC	ENSG00000169439				115	0	0	123	7	5.38462
C9orf84	0	genome.wustl.edu	37	9	114462251	114462251	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	9	114462251	114462251	C	T	SNP	C9orf84	ENST00000318737	human	ensembl	74_37	-1	known	missense	c.2974	p.E992K	1.000	NULL	superfamily_RuvA_2-like	-	no_errors	C9orf84	HGNC	ENSG00000165181				145	0	0	121	20	14.1844
RGS3	0	genome.wustl.edu	37	9	116357901	116357901	+	Silent	SNP	C	C	T			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	9	116357901	116357901	C	T	SNP	RGS3	ENST00000350696	human	ensembl	74_37	+1	known	silent	c.3267	p.A1089	1.000	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	pfam_RGS_dom,pfam_C2_dom,pfam_PDZ,superfamily_Regulat_G_prot_signal_superfam,superfamily_C2_dom,superfamily_PDZ,smart_C2_dom,smart_PDZ,smart_Regulat_G_prot_signal_superfam,pfscan_C2_dom,pfscan_PDZ,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS3	HGNC	ENSG00000138835				111	0	0	77	5	6.09756
SARDH	0	genome.wustl.edu	37	9	136596596	136596596	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	9	136596596	136596596	G	A	SNP	SARDH	ENST00000371872	human	ensembl	74_37	-1	known	missense	c.521	p.A174V	0.980	pfam_FAD-dep_OxRdtase	pfam_FAD-dep_OxRdtase,pfam_GCV_T_N,pfam_GCV_T_C	-	no_errors	SARDH	HGNC	ENSG00000123453				82	0	0	53	5	8.62069
ADAMTSL1	0	genome.wustl.edu	37	9	18657714	18657714	+	Silent	SNP	G	G	A			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	9	18657714	18657714	G	A	SNP	ADAMTSL1	ENST00000327883	human	ensembl	74_37	+1	known	silent	c.912	p.T304	0.799	superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,pfam_ADAM_spacer1,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_Thrombospondin_1_rpt	-	no_errors	ADAMTSL1	HGNC	ENSG00000178031				118	0	0	92	9	8.91089
UNC13B	0	genome.wustl.edu	37	9	35375189	35375189	+	Silent	SNP	C	C	T			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	9	35375189	35375189	C	T	SNP	UNC13B	ENST00000378496	human	ensembl	74_37	+1	known	silent	c.1359	p.D453	1.000	NULL	pfam_Munc13_subgr_dom-2,pfam_Ca-dep_secretion_activator,pfam_C2_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_dom,smart_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13B	HGNC	ENSG00000198722				166	0	0	121	19	13.5714
MAGEH1	0	genome.wustl.edu	37	X	55478888	55478888	+	Silent	SNP	C	C	G			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	X	55478888	55478888	C	G	SNP	MAGEH1	ENST00000342972	human	ensembl	74_37	+1	known	silent	c.81	p.A27	0.924	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEH1	HGNC	ENSG00000187601				21	0	0	12	4	25
TAF9B	0	genome.wustl.edu	37	X	77393257	77393257	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	X	77393257	77393257	A	T	SNP	TAF9B	ENST00000341864	human	ensembl	74_37	-1	known	missense	c.394	p.L132I	0.992	NULL	pfam_TFIID-31,superfamily_Histone-fold	-	no_errors	TAF9B	HGNC	ENSG00000187325				52	0	0	64	13	16.8831
ENSG00000232274	0	genome.wustl.edu	37	1	143210193	143210194	+	RNA	INS	-	-	T			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	1	143210193	143210194	-	T	INS	ENSG00000232274	ENST00000412204	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.007:0.007	-	-	-	no_errors	RP11-782C8.2	Clone_based_vega_gene	ENSG00000232274				126	1	0.787402	137	8	5.51724
CLIP3	0	genome.wustl.edu	37	19	36515298	36515300	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	19	36515298	36515300	CTT	-	DEL	CLIP3	ENST00000360535	human	ensembl	74_37	-1	known	in_frame_del	c.918_916	p.K306in_frame_del	1.000:1.000:1.000	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain	pfam_CAP-Gly_domain,pfam_Ankyrin_rpt,superfamily_CAP-Gly_domain,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_CAP-Gly_domain	-	no_errors	CLIP3	HGNC	ENSG00000105270				47	0	0	42	8	16
OR2K2	0	genome.wustl.edu	37	9	114090513	114090514	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-BR-6457-01A-21D-1800-08	TCGA-BR-6457-10A-01D-1800-08	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a79bb4ec-4479-4a1f-97c6-fe1b0a99c2f6	b862ca4f-f9c3-4a54-9af8-11128af80cc4	9	114090513	114090514	AG	-	DEL	OR2K2	ENST00000374428	human	ensembl	74_37	-1	known	frame_shift_del	c.288_287	p.S96fs	0.922:0.996	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2K2	HGNC	ENSG00000171133				70	0	0	72	7	8.86076
