Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
NES	0	genome.wustl.edu	37	1	156640713	156640713	+	Silent	SNP	G	G	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	1	156640713	156640713	G	C	SNP	NES	ENST00000368223	human	ensembl	74_37	-1	known	silent	c.3267	p.A1089	0.000	NULL	pfam_IF	-	no_errors	NES	HGNC	ENSG00000132688				54	0	0	40	7	14.8936
MNDA	0	genome.wustl.edu	37	1	158815416	158815416	+	Silent	SNP	A	A	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	1	158815416	158815416	A	C	SNP	MNDA	ENST00000368141	human	ensembl	74_37	+1	known	silent	c.610	p.R204	0.000	pfscan_HIN200/IF120x	pfam_HIN200/IF120x,pfam_DAPIN,pfscan_DAPIN,pfscan_HIN200/IF120x	-	no_errors	MNDA	HGNC	ENSG00000163563				70	0	0	57	4	6.55738
FCRL6	0	genome.wustl.edu	37	1	159778997	159778997	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	1	159778997	159778997	T	G	SNP	FCRL6	ENST00000368106	human	ensembl	74_37	+1	known	missense	c.566	p.V189G	0.150	smart_Ig_sub,pfscan_Ig-like_dom	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	FCRL6	HGNC	ENSG00000181036				82	0	0	116	19	14.0741
SZRD1	0	genome.wustl.edu	37	1	16719932	16719932	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	1	16719932	16719932	G	C	SNP	SZRD1	ENST00000375590	human	ensembl	74_37	+1	known	missense	c.251	p.G84A	1.000	NULL	NULL	-	no_errors	SZRD1	HGNC	ENSG00000055070				23	0	0	24	4	14.2857
ZNF648	0	genome.wustl.edu	37	1	182025473	182025473	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	1	182025473	182025473	T	C	SNP	ZNF648	ENST00000339948	human	ensembl	74_37	-1	novel	missense	c.1673	p.K558R	0.997	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF648	HGNC	ENSG00000179930				64	0	0	58	13	18.3099
UBR4	0	genome.wustl.edu	37	1	19440436	19440436	+	Silent	SNP	T	T	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	1	19440436	19440436	T	C	SNP	UBR4	ENST00000375218	human	ensembl	74_37	-1	known	silent	c.576	p.V192	0.473	NULL	NULL	-	no_errors	UBR4	HGNC	ENSG00000127481				196	0	0	117	40	25.4777
CRB1	0	genome.wustl.edu	37	1	197404424	197404424	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	1	197404424	197404424	A	C	SNP	CRB1	ENST00000367400	human	ensembl	74_37	+1	known	missense	c.3431	p.N1144T	0.012	pfam_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_EG-like_dom,pfam_Laminin_G,pfam_EGF_extracell,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	CRB1	HGNC	ENSG00000134376				96	0	0	54	15	21.7391
PPFIA4	0	genome.wustl.edu	37	1	203045504	203045504	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	1	203045504	203045504	G	A	SNP	PPFIA4	ENST00000414050	human	ensembl	74_37	+1	known	missense	c.2731	p.A911T	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	PPFIA4	HGNC	ENSG00000143847				145	0	0	106	22	17.1875
ATP2B4	0	genome.wustl.edu	37	1	203702357	203702357	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	1	203702357	203702357	G	A	SNP	ATP2B4	ENST00000341360	human	ensembl	74_37	+1	known	missense	c.3316	p.V1106I	1.000	pfam_ATP_Ca_trans_C	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,pfam_ATP_Ca_trans_C,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_plasma,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP2B4	HGNC	ENSG00000058668				102	1	0.970874	69	13	15.8537
IL19	0	genome.wustl.edu	37	1	206972263	206972263	+	Silent	SNP	G	G	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	1	206972263	206972263	G	A	SNP	IL19	ENST00000340758	human	ensembl	74_37	+1	known	silent	c.24	p.P8	0.000	NULL	pfam_IL-10/19/20/24/26_fam,superfamily_4_helix_cytokine-like_core,prints_IL-19,prints_IL-24	-	no_errors	IL19	HGNC	ENSG00000142224				113	1	0.877193	88	15	14.5631
G0S2	0	genome.wustl.edu	37	1	209849270	209849270	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	1	209849270	209849270	C	A	SNP	G0S2	ENST00000367029	human	ensembl	74_37	+1	known	missense	c.241	p.Q81K	0.006	NULL	NULL	-	no_errors	G0S2	HGNC	ENSG00000123689				46	0	0	31	8	20.5128
TGFB2	0	genome.wustl.edu	37	1	218607431	218607431	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	1	218607431	218607431	A	C	SNP	TGFB2	ENST00000366929	human	ensembl	74_37	+1	known	missense	c.602	p.K201T	1.000	pirsf_TGF-beta,pfam_TGF-b_N,prints_TGFb2,prints_TGF-beta	pirsf_TGF-beta,pfam_TGF-b_N,pfam_TGF-b_C,smart_TGF-b_C,prints_TGFb2,prints_TGF-beta	-	no_errors	TGFB2	HGNC	ENSG00000092969				360	0	0	279	123	30.597
MIA3	0	genome.wustl.edu	37	1	222794619	222794619	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	1	222794619	222794619	A	T	SNP	MIA3	ENST00000344441	human	ensembl	74_37	+1	known	missense	c.252	p.E84D	1.000	pfam_SH3_2,superfamily_SH3_domain	pfam_SH3_2,superfamily_SH3_domain	-	no_errors	MIA3	HGNC	ENSG00000154305				105	0	0	70	32	31.3725
OBSCN	0	genome.wustl.edu	37	1	228462138	228462138	+	Silent	SNP	C	C	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	1	228462138	228462138	C	T	SNP	OBSCN	ENST00000422127	human	ensembl	74_37	+1	known	silent	c.5676	p.T1892	0.000	smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358				40	0	0	24	23	48.9362
OBSCN	0	genome.wustl.edu	37	1	228548384	228548384	+	Silent	SNP	C	C	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	1	228548384	228548384	C	T	SNP	OBSCN	ENST00000366709	human	ensembl	74_37	+1	known	silent	c.11148	p.F3716	0.975	NULL	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_DH-domain,pfam_Fibronectin_type3,pfam_IQ_motif_EF-hand-BS,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358				34	0	0	33	24	42.1053
KIAA1804	0	genome.wustl.edu	37	1	233512225	233512225	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	1	233512225	233512225	A	C	SNP	KIAA1804	ENST00000366624	human	ensembl	74_37	+1	known	missense	c.1876	p.K626Q	1.000	pirsf_MAPKKK9/10/11	pirsf_MAPKKK9/10/11,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH3_domain,pfscan_SH3_domain,pfscan_Prot_kinase_dom	-	no_errors	MLK4	Uniprot_gn	ENSG00000143674				53	0	0	80	10	11.1111
TFB2M	0	genome.wustl.edu	37	1	246707908	246707908	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	1	246707908	246707908	A	T	SNP	TFB2M	ENST00000366514	human	ensembl	74_37	-1	known	missense	c.934	p.L312I	0.582	pfam_rRNA_Ade_methylase_transferase,pirsf_Mt_di-Me-Ado_Trfase_2_prcur	pfam_rRNA_Ade_methylase_transferase,smart_rRNA_Ade_methylase_Trfase_N,pirsf_Mt_di-Me-Ado_Trfase_2_prcur	-	no_errors	TFB2M	HGNC	ENSG00000162851				75	0	0	69	19	21.5909
OR2B11	0	genome.wustl.edu	37	1	247614782	247614782	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	1	247614782	247614782	A	T	SNP	OR2B11	ENST00000318749	human	ensembl	74_37	-1	known	missense	c.503	p.V168E	0.009	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2B11	HGNC	ENSG00000177535				38	0	0	39	4	9.30233
OR2T6	0	genome.wustl.edu	37	1	248551780	248551780	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	1	248551780	248551780	A	G	SNP	OR2T6	ENST00000355728	human	ensembl	74_37	+1	known	missense	c.871	p.S291G	0.998	prints_Olfact_rcpt,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR2T6	HGNC	ENSG00000198104				92	0	0	66	47	41.5929
CSMD2	0	genome.wustl.edu	37	1	34238265	34238265	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	1	34238265	34238265	T	G	SNP	CSMD2	ENST00000373381	human	ensembl	74_37	-1	known	missense	c.1751	p.K584T	0.997	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD2	HGNC	ENSG00000121904				127	0	0	80	23	22.3301
GJA9	0	genome.wustl.edu	37	1	39341098	39341098	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	1	39341098	39341098	A	C	SNP	GJA9	ENST00000357771	human	ensembl	74_37	-1	known	missense	c.673	p.L225V	1.000	pfam_Connexin_CCC,prints_Connexin	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin	-	no_errors	GJA9	HGNC	ENSG00000131233				78	0	0	94	10	9.61538
RLF	0	genome.wustl.edu	37	1	40704945	40704945	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	1	40704945	40704945	A	C	SNP	RLF	ENST00000372771	human	ensembl	74_37	+1	known	missense	c.4571	p.K1524T	0.995	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	RLF	HGNC	ENSG00000117000				114	0	0	248	27	9.81818
RLF	0	genome.wustl.edu	37	1	40705056	40705056	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	1	40705056	40705056	A	C	SNP	RLF	ENST00000372771	human	ensembl	74_37	+1	known	missense	c.4682	p.K1561T	0.978	smart_Znf_C2H2-like	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	RLF	HGNC	ENSG00000117000				124	1	0.8	236	24	9.23077
COL24A1	0	genome.wustl.edu	37	1	86590762	86590762	+	Silent	SNP	G	G	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	1	86590762	86590762	G	A	SNP	COL24A1	ENST00000370571	human	ensembl	74_37	-1	known	silent	c.1257	p.N419	0.998	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL24A1	HGNC	ENSG00000171502				58	0	0	55	13	19.1176
GBP4	0	genome.wustl.edu	37	1	89657186	89657186	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	1	89657186	89657186	T	C	SNP	GBP4	ENST00000355754	human	ensembl	74_37	-1	known	missense	c.674	p.K225R	0.000	pfam_Guanylate-bd_N,superfamily_P-loop_NTPase	pfam_Guanylate-bd_C,pfam_Guanylate-bd_N,superfamily_Guanylate-bd_C,superfamily_P-loop_NTPase	-	no_errors	GBP4	HGNC	ENSG00000162654				47	0	0	40	10	20
CCDC18	0	genome.wustl.edu	37	1	93705450	93705450	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	1	93705450	93705450	T	G	SNP	CCDC18	ENST00000557479	human	ensembl	74_37	+1	known	missense	c.3332	p.L1111R	1.000	superfamily_Prefoldin	superfamily_Prefoldin,superfamily_tRNA-bd_arm	-	no_errors	CCDC18	HGNC	ENSG00000122483				57	0	0	39	11	22
TRIM8	0	genome.wustl.edu	37	10	104415041	104415041	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	10	104415041	104415041	G	A	SNP	TRIM8	ENST00000302424	human	ensembl	74_37	+1	known	missense	c.871	p.D291N	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	TRIM8	HGNC	ENSG00000171206				74	0	0	55	3	5.17241
GFRA1	0	genome.wustl.edu	37	10	117856235	117856235	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	10	117856235	117856235	A	G	SNP	GFRA1	ENST00000355422	human	ensembl	74_37	-1	known	missense	c.811	p.S271P	1.000	pfam_GDNF/GAS1,smart_GDNF/GAS1,pirsf_Glial_neurotroph_fac_rcpt_a1/2	pfam_GDNF/GAS1,smart_GDNF/GAS1,pirsf_Glial_neurotroph_fac_rcpt_a1/2,prints_GDNF_rcpt,prints_GDNF_rcpt_A1	-	no_errors	GFRA1	HGNC	ENSG00000151892				53	0	0	42	9	17.6471
CACUL1	0	genome.wustl.edu	37	10	120467071	120467071	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	10	120467071	120467071	C	A	SNP	CACUL1	ENST00000369151	human	ensembl	74_37	-1	known	missense	c.626	p.R209I	1.000	pfam_Cullin_N,superfamily_Cullin_repeat-like_dom	pfam_Cullin_N,superfamily_Cullin_repeat-like_dom	-	no_errors	CACUL1	HGNC	ENSG00000151893				79	0	0	62	5	7.46269
HTRA1	0	genome.wustl.edu	37	10	124273733	124273733	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	10	124273733	124273733	T	C	SNP	HTRA1	ENST00000368984	human	ensembl	74_37	+1	known	missense	c.1301	p.I434T	0.998	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,prints_Peptidase_S1C	pfam_Peptidase_S1,pfam_PDZ,pfam_Kazal_dom,pfam_IGFBP-like,superfamily_Trypsin-like_Pept_dom,superfamily_PDZ,smart_IGFBP-like,smart_Kazal_dom,smart_PDZ,pfscan_PDZ,prints_Peptidase_S1C	-	no_errors	HTRA1	HGNC	ENSG00000166033				337	0	0	241	57	19.1275
APBB1IP	0	genome.wustl.edu	37	10	26789970	26789970	+	Nonsense_Mutation	SNP	T	T	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	10	26789970	26789970	T	A	SNP	APBB1IP	ENST00000376236	human	ensembl	74_37	+1	known	nonsense	c.383	p.L128*	0.777	NULL	pfam_Ras-assoc,pfam_Pleckstrin_homology,smart_Ras-assoc,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Ras-assoc	-	no_errors	APBB1IP	HGNC	ENSG00000077420				174	1	0.571429	108	14	11.4754
SVIL	0	genome.wustl.edu	37	10	29813446	29813446	+	Silent	SNP	G	G	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	10	29813446	29813446	G	A	SNP	SVIL	ENST00000355867	human	ensembl	74_37	-1	known	silent	c.2541	p.N847	0.693	NULL	pfam_Gelsolin_dom,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Villin/Gelsolin,smart_Villin_headpiece,pfscan_Villin_headpiece,prints_Villin/Gelsolin	-	no_errors	SVIL	HGNC	ENSG00000197321				149	0	0	89	21	19.0909
ZEB1	0	genome.wustl.edu	37	10	31809813	31809813	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	10	31809813	31809813	A	C	SNP	ZEB1	ENST00000361642	human	ensembl	74_37	+1	known	missense	c.1553	p.E518A	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZEB1	HGNC	ENSG00000148516				111	0	0	78	12	13.3333
EPC1	0	genome.wustl.edu	37	10	32560982	32560982	+	Silent	SNP	G	G	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	10	32560982	32560982	G	A	SNP	EPC1	ENST00000263062	human	ensembl	74_37	-1	known	silent	c.2046	p.I682	1.000	pfam_Enhancer_polycomb_C	pfam_Enhancer_polycomb_C,pfam_Enhancer_polycomb-like_N	-	no_errors	EPC1	HGNC	ENSG00000120616				68	0	0	48	14	22.5806
NRP1	0	genome.wustl.edu	37	10	33515169	33515169	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	10	33515169	33515169	C	T	SNP	NRP1	ENST00000265371	human	ensembl	74_37	-1	known	missense	c.1030	p.A344T	1.000	pirsf_Neuropilin,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	pirsf_Neuropilin,pfam_CUB_dom,pfam_Coagulation_fac_5/8-C_type_dom,pfam_MAM_dom,pfam_Neuropilin1_C,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl_sf,superfamily_CUB_dom,smart_CUB_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_MAM_dom,prints_MAM_dom,pfscan_CUB_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_MAM_dom	-	no_errors	NRP1	HGNC	ENSG00000099250				72	0	0	51	13	20.3125
FZD8	0	genome.wustl.edu	37	10	35928827	35928827	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	10	35928827	35928827	G	A	SNP	FZD8	ENST00000374694	human	ensembl	74_37	-1	known	missense	c.1531	p.R511C	1.000	pfam_Frizzled,pfscan_GPCR_2-like	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	FZD8	HGNC	ENSG00000177283				47	0	0	23	9	28.125
MARCH8	0	genome.wustl.edu	37	10	45954591	45954591	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	10	45954591	45954591	T	C	SNP	MARCH8	ENST00000319836	human	ensembl	74_37	-1	known	missense	c.548	p.E183G	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH,pfscan_Znf_RING	-	no_errors	MARCH8	HGNC	ENSG00000165406				92	0	0	58	14	19.4444
AGAP7	0	genome.wustl.edu	37	10	51465248	51465248	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	10	51465248	51465248	G	A	SNP	AGAP7	ENST00000374095	human	ensembl	74_37	-1	known	missense	c.1208	p.T403M	0.504	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	AGAP7	HGNC	ENSG00000204169				218	0	0	157	45	22.2772
PRKG1	0	genome.wustl.edu	37	10	53564348	53564348	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	10	53564348	53564348	T	G	SNP	PRKG1	ENST00000373980	human	ensembl	74_37	+1	known	missense	c.596	p.L199R	1.000	pirsf_cGMP-dependent_protein_kinase,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	pirsf_cGMP-dependent_protein_kinase,pfam_Prot_kinase_dom,pfam_cNMP-bd_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,prints_cGMP_dep_kinase,prints_cAMP/cGMP_kin,pfscan_cNMP-bd_dom,pfscan_Prot_kinase_dom	-	no_errors	PRKG1	HGNC	ENSG00000185532				63	0	0	47	6	11.3208
SIRT1	0	genome.wustl.edu	37	10	69672625	69672625	+	Silent	SNP	T	T	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	10	69672625	69672625	T	G	SNP	SIRT1	ENST00000212015	human	ensembl	74_37	+1	known	silent	c.1752	p.T584	0.004	NULL	pfam_Sirtuin,pfscan_Ssirtuin_cat_dom	-	no_errors	SIRT1	HGNC	ENSG00000096717				119	0	0	99	9	8.33333
MYPN	0	genome.wustl.edu	37	10	69882022	69882022	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	10	69882022	69882022	G	A	SNP	MYPN	ENST00000358913	human	ensembl	74_37	+1	known	missense	c.827	p.R276Q	1.000	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	MYPN	HGNC	ENSG00000138347				77	0	0	70	13	15.6627
SLC29A3	0	genome.wustl.edu	37	10	73082526	73082526	+	Silent	SNP	A	A	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	10	73082526	73082526	A	C	SNP	SLC29A3	ENST00000373189	human	ensembl	74_37	+1	known	silent	c.15	p.S5	0.118	NULL	pfam_Eqnu_transpt,prints_Eqnu_transpt	-	no_errors	SLC29A3	HGNC	ENSG00000198246				277	0	0	244	17	6.51341
ITIH5	0	genome.wustl.edu	37	10	7658034	7658034	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	10	7658034	7658034	A	C	SNP	ITIH5	ENST00000256861	human	ensembl	74_37	-1	known	missense	c.850	p.F284V	1.000	NULL	pfam_ITI_HC_C,pfam_VIT,pfam_VWF_A,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	ITIH5	HGNC	ENSG00000123243				110	1	0.900901	67	12	15.1899
IFIT3	0	genome.wustl.edu	37	10	91098757	91098757	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	10	91098757	91098757	T	G	SNP	IFIT3	ENST00000371811	human	ensembl	74_37	+1	known	missense	c.345	p.I115M	0.000	smart_TPR_repeat	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	IFIT3	HGNC	ENSG00000119917				110	0	0	61	37	37.7551
KIAA1377	0	genome.wustl.edu	37	11	101815057	101815057	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	11	101815057	101815057	C	T	SNP	KIAA1377	ENST00000263468	human	ensembl	74_37	+1	known	missense	c.310	p.L104F	1.000	NULL	NULL	-	no_errors	KIAA1377	HGNC	ENSG00000110318				58	0	0	44	10	18.5185
GUCY1A2	0	genome.wustl.edu	37	11	106680788	106680788	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	11	106680788	106680788	T	G	SNP	GUCY1A2	ENST00000282249	human	ensembl	74_37	-1	known	missense	c.1623	p.Q541H	0.221	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	pfam_Haem_no_assoc-bd,pfam_A/G_cyclase,pfam_Heme_NO-bd,superfamily_A/G_cyclase,superfamily_NO_sig/Golgi_transp_ligand-bd,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	GUCY1A2	HGNC	ENSG00000152402				82	0	0	67	11	14.1026
USP28	0	genome.wustl.edu	37	11	113698007	113698007	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	11	113698007	113698007	G	C	SNP	USP28	ENST00000003302	human	ensembl	74_37	-1	known	missense	c.1135	p.P379A	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,superfamily_UBA-like,pfscan_Peptidase_C19/C67	-	no_errors	USP28	HGNC	ENSG00000048028				81	0	0	45	13	22.4138
ZBTB16	0	genome.wustl.edu	37	11	113934741	113934741	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	11	113934741	113934741	A	G	SNP	ZBTB16	ENST00000335953	human	ensembl	74_37	+1	known	missense	c.719	p.E240G	1.000	NULL	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB16	HGNC	ENSG00000109906				33	0	0	23	4	14.8148
NXPE1	0	genome.wustl.edu	37	11	114400955	114400955	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	11	114400955	114400955	T	G	SNP	NXPE1	ENST00000424269	human	ensembl	74_37	-1	known	missense	c.775	p.T259P	0.000	pfam_NXPH/NXPE	pfam_NXPH/NXPE,superfamily_Ig_E-set	-	no_errors	NXPE1	HGNC	ENSG00000095110				98	0	0	87	14	13.8614
NXPE2	0	genome.wustl.edu	37	11	114569142	114569142	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	11	114569142	114569142	T	C	SNP	NXPE2	ENST00000389586	human	ensembl	74_37	+1	known	missense	c.508	p.F170L	1.000	pfam_NXPH/NXPE,superfamily_Ig_E-set	pfam_NXPH/NXPE,superfamily_Ig_E-set	-	no_errors	NXPE2	HGNC	ENSG00000204361				26	0	0	25	4	13.7931
C11orf63	0	genome.wustl.edu	37	11	122830032	122830032	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	11	122830032	122830032	A	C	SNP	C11orf63	ENST00000227349	human	ensembl	74_37	+1	known	missense	c.2216	p.N739T	0.000	NULL	NULL	-	no_errors	C11orf63	HGNC	ENSG00000109944				103	0	0	84	14	14.2857
TMEM225	0	genome.wustl.edu	37	11	123755343	123755343	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	11	123755343	123755343	T	C	SNP	TMEM225	ENST00000375026	human	ensembl	74_37	-1	known	missense	c.182	p.D61G	0.080	NULL	NULL	-	no_errors	TMEM225	HGNC	ENSG00000204300				59	0	0	41	5	10.8696
ROBO4	0	genome.wustl.edu	37	11	124766979	124766979	+	Silent	SNP	C	C	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	11	124766979	124766979	C	A	SNP	ROBO4	ENST00000306534	human	ensembl	74_37	-1	known	silent	c.249	p.L83	0.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	ROBO4	HGNC	ENSG00000154133				49	0	0	48	8	14.2857
LUZP2	0	genome.wustl.edu	37	11	25004695	25004695	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	11	25004695	25004695	A	C	SNP	LUZP2	ENST00000336930	human	ensembl	74_37	+1	known	missense	c.621	p.K207N	1.000	NULL	NULL	-	no_errors	LUZP2	HGNC	ENSG00000187398				139	0	0	176	28	13.7255
TTC17	0	genome.wustl.edu	37	11	43425686	43425686	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	11	43425686	43425686	G	A	SNP	TTC17	ENST00000039989	human	ensembl	74_37	+1	known	missense	c.1471	p.A491T	1.000	NULL	pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC17	HGNC	ENSG00000052841				196	0	0	164	23	12.2995
CKAP5	0	genome.wustl.edu	37	11	46831385	46831385	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	11	46831385	46831385	T	C	SNP	CKAP5	ENST00000415402	human	ensembl	74_37	-1	known	missense	c.670	p.S224G	1.000	superfamily_ARM-type_fold	pfam_CLASP_N_dom,pfam_HEAT,superfamily_ARM-type_fold,superfamily_Homing_endonucl,pfscan_HEAT_type_2	-	no_errors	CKAP5	HGNC	ENSG00000175216				151	0	0	143	15	9.49367
OR51A7	0	genome.wustl.edu	37	11	4928674	4928674	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	11	4928674	4928674	T	G	SNP	OR51A7	ENST00000359350	human	ensembl	74_37	+1	known	missense	c.75	p.I25M	0.005	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR51A7	HGNC	ENSG00000176895				84	0	0	78	13	14.2857
LOC440040	0	genome.wustl.edu	37	11	49598071	49598071	+	RNA	SNP	G	G	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	11	49598071	49598071	G	C	SNP	LOC440040	ENST00000527477	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-707M1.1	Clone_based_vega_gene	ENSG00000205035				25	0	0	20	5	20
OR5L1	0	genome.wustl.edu	37	11	55579495	55579495	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	11	55579495	55579495	T	G	SNP	OR5L1	ENST00000333973	human	ensembl	74_37	+1	known	missense	c.553	p.L185V	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5L1	HGNC	ENSG00000186117				213	0	0	134	30	18.2927
OR5T1	0	genome.wustl.edu	37	11	56043468	56043468	+	Silent	SNP	T	T	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	11	56043468	56043468	T	G	SNP	OR5T1	ENST00000313033	human	ensembl	74_37	+1	known	silent	c.354	p.T118	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5T1	HGNC	ENSG00000181698				238	0	0	144	31	17.7143
OR8H1	0	genome.wustl.edu	37	11	56058069	56058069	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	11	56058069	56058069	A	C	SNP	OR8H1	ENST00000313022	human	ensembl	74_37	-1	known	missense	c.470	p.V157G	0.001	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8H1	HGNC	ENSG00000181693				98	0	0	64	13	16.8831
OR5B2	0	genome.wustl.edu	37	11	58189836	58189836	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	11	58189836	58189836	T	C	SNP	OR5B2	ENST00000302581	human	ensembl	74_37	-1	known	missense	c.899	p.K300R	0.005	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5B2	HGNC	ENSG00000172365				84	0	0	57	9	13.6364
DTX4	0	genome.wustl.edu	37	11	58962713	58962713	+	Silent	SNP	C	C	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	11	58962713	58962713	C	T	SNP	DTX4	ENST00000227451	human	ensembl	74_37	+1	known	silent	c.1407	p.T469	1.000	NULL	pfam_WWE-dom,pfam_Znf_C3HC4_RING-type,smart_WWE-dom_subgr,smart_Znf_RING,pfscan_WWE-dom,pfscan_Znf_RING	-	no_errors	DTX4	HGNC	ENSG00000110042				94	0	0	68	22	24.4444
PGA5	0	genome.wustl.edu	37	11	61017153	61017153	+	Silent	SNP	C	C	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	11	61017153	61017153	C	T	SNP	PGA5	ENST00000312403	human	ensembl	74_37	+1	known	silent	c.786	p.N262	0.855	pfam_Aspartic_peptidase,superfamily_Peptidase_aspartic_dom	pfam_Aspartic_peptidase,pfam_Aspartic_peptidase_N,superfamily_Peptidase_aspartic_dom,prints_Aspartic_peptidase	-	no_errors	PGA5	HGNC	ENSG00000256713				184	0	0	142	28	16.4706
CCDC88B	0	genome.wustl.edu	37	11	64119683	64119683	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	11	64119683	64119683	C	T	SNP	CCDC88B	ENST00000356786	human	ensembl	74_37	+1	known	missense	c.3181	p.R1061W	0.115	NULL	pfam_Hook-related_fam	-	no_errors	CCDC88B	HGNC	ENSG00000168071				27	0	0	21	11	34.375
PRSS23	0	genome.wustl.edu	37	11	86519692	86519692	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	11	86519692	86519692	T	G	SNP	PRSS23	ENST00000280258	human	ensembl	74_37	+1	known	missense	c.1007	p.I336S	1.000	superfamily_Trypsin-like_Pept_dom	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom	-	no_errors	PRSS23	HGNC	ENSG00000150687				143	0	0	106	22	17.1875
GRM5	0	genome.wustl.edu	37	11	88780736	88780736	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	11	88780736	88780736	G	A	SNP	GRM5	ENST00000305447	human	ensembl	74_37	-1	known	missense	c.305	p.S102L	1.000	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_Metabotropic_Glu_rcpt_Homer-bd,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,prints_GPCR_3_mtglu_rcpt_5,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_1,pfscan_GPCR_3_C	-	no_errors	GRM5	HGNC	ENSG00000168959				48	0	0	38	11	22.449
CCDC67	0	genome.wustl.edu	37	11	93170867	93170867	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	11	93170867	93170867	A	C	SNP	CCDC67	ENST00000298050	human	ensembl	74_37	+1	known	missense	c.1797	p.K599N	0.995	NULL	superfamily_MHC_II-assoc_invariant_trimer	-	no_errors	CCDC67	HGNC	ENSG00000165325				151	1	0.657895	118	20	14.4928
CNTN5	0	genome.wustl.edu	37	11	99827733	99827733	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	11	99827733	99827733	G	A	SNP	CNTN5	ENST00000279463	human	ensembl	74_37	+1	known	missense	c.869	p.R290H	0.291	smart_Ig_sub	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CNTN5	HGNC	ENSG00000149972				32	0	0	41	4	8.88889
SCYL2	0	genome.wustl.edu	37	12	100685289	100685289	+	Silent	SNP	A	A	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	12	100685289	100685289	A	C	SNP	SCYL2	ENST00000360820	human	ensembl	74_37	+1	known	silent	c.186	p.A62	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	-	no_errors	SCYL2	HGNC	ENSG00000136021				89	0	0	58	8	12.1212
CLEC1B	0	genome.wustl.edu	37	12	10149597	10149597	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	12	10149597	10149597	C	T	SNP	CLEC1B	ENST00000298527	human	ensembl	74_37	-1	known	missense	c.286	p.G96S	0.341	NULL	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	CLEC1B	HGNC	ENSG00000165682				103	0	0	55	24	30.3797
NAA25	0	genome.wustl.edu	37	12	112471065	112471065	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	12	112471065	112471065	A	G	SNP	NAA25	ENST00000261745	human	ensembl	74_37	-1	known	missense	c.2768	p.L923P	1.000	NULL	pfam_N-acetylTrfase_B_cplx_non-cat,pfscan_TPR-contain_dom	-	no_errors	NAA25	HGNC	ENSG00000111300				106	0	0	65	15	18.75
DNAH10	0	genome.wustl.edu	37	12	124414973	124414973	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	12	124414973	124414973	G	A	SNP	DNAH10	ENST00000409039	human	ensembl	74_37	+1	known	missense	c.12283	p.D4095N	1.000	pfam_Dynein_heavy_dom	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_PyrdxlP-dep_Trfase,smart_AAA+_ATPase	-	no_errors	DNAH10	HGNC	ENSG00000197653				33	0	0	25	8	24.2424
TEAD4	0	genome.wustl.edu	37	12	3131176	3131176	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	12	3131176	3131176	A	C	SNP	TEAD4	ENST00000359864	human	ensembl	74_37	+1	known	missense	c.890	p.K297T	1.000	pfam_TEA/ATTS,pirsf_TEF	pfam_TEA/ATTS,smart_TEA/ATTS,pirsf_TEF,pfscan_TEA/ATTS,prints_TEA/ATTS	-	no_errors	TEAD4	HGNC	ENSG00000197905				139	0	0	104	20	16.129
ALG10B	0	genome.wustl.edu	37	12	38714574	38714574	+	Silent	SNP	G	G	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	12	38714574	38714574	G	A	SNP	ALG10B	ENST00000308742	human	ensembl	74_37	+1	known	silent	c.981	p.L327	0.001	pfam_Alg10,pirsf_Alg10	pfam_Alg10,pirsf_Alg10	-	no_errors	ALG10B	HGNC	ENSG00000175548				179	0	0	173	32	15.6098
CPNE8	0	genome.wustl.edu	37	12	39233729	39233729	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	12	39233729	39233729	A	T	SNP	CPNE8	ENST00000331366	human	ensembl	74_37	-1	known	missense	c.319	p.L107I	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_Copine,pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,smart_VWF_A,pfscan_C2_dom,pfscan_VWF_A	-	no_errors	CPNE8	HGNC	ENSG00000139117				48	0	0	29	7	19.4444
ADAMTS20	0	genome.wustl.edu	37	12	43840490	43840490	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	12	43840490	43840490	T	G	SNP	ADAMTS20	ENST00000389420	human	ensembl	74_37	-1	known	missense	c.2105	p.N702T	1.000	prints_Peptidase_M12B_ADAM-TS	pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS20	HGNC	ENSG00000173157				62	0	0	47	11	18.9655
LIMA1	0	genome.wustl.edu	37	12	50616015	50616015	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	12	50616015	50616015	C	T	SNP	LIMA1	ENST00000394943	human	ensembl	74_37	-1	known	missense	c.419	p.G140D	0.000	NULL	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	LIMA1	HGNC	ENSG00000050405				104	0	0	62	26	29.5455
TESPA1	0	genome.wustl.edu	37	12	55356615	55356615	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	12	55356615	55356615	G	A	SNP	TESPA1	ENST00000316577	human	ensembl	74_37	-1	known	missense	c.1067	p.S356F	0.447	NULL	NULL	-	no_errors	TESPA1	HGNC	ENSG00000135426				54	0	0	39	19	32.7586
IKZF4	0	genome.wustl.edu	37	12	56421645	56421645	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	12	56421645	56421645	C	G	SNP	IKZF4	ENST00000262032	human	ensembl	74_37	+1	known	missense	c.629	p.S210C	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	IKZF4	HGNC	ENSG00000123411				43	0	0	24	7	22.5806
TRHDE	0	genome.wustl.edu	37	12	73056901	73056901	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	12	73056901	73056901	G	A	SNP	TRHDE	ENST00000261180	human	ensembl	74_37	+1	known	missense	c.3001	p.E1001K	0.997	NULL	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	TRHDE	HGNC	ENSG00000072657				79	0	0	77	10	11.4943
OSBPL8	0	genome.wustl.edu	37	12	76784288	76784288	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	12	76784288	76784288	C	T	SNP	OSBPL8	ENST00000261183	human	ensembl	74_37	-1	known	missense	c.1079	p.R360K	1.000	NULL	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL8	HGNC	ENSG00000091039				153	0	0	121	27	18.2432
NAV3	0	genome.wustl.edu	37	12	78444768	78444768	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	12	78444768	78444768	G	A	SNP	NAV3	ENST00000397909	human	ensembl	74_37	+1	known	missense	c.2357	p.R786H	1.000	NULL	pfam_CH-domain,pfam_ATPase_AAA_core,superfamily_CH-domain,superfamily_P-loop_NTPase,smart_CH-domain,smart_AAA+_ATPase,pfscan_CH-domain	-	no_errors	NAV3	HGNC	ENSG00000067798				50	0	0	38	6	13.6364
NAV3	0	genome.wustl.edu	37	12	78573437	78573437	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	12	78573437	78573437	T	G	SNP	NAV3	ENST00000397909	human	ensembl	74_37	+1	known	missense	c.5492	p.I1831S	1.000	NULL	pfam_CH-domain,pfam_ATPase_AAA_core,superfamily_CH-domain,superfamily_P-loop_NTPase,smart_CH-domain,smart_AAA+_ATPase,pfscan_CH-domain	-	no_errors	NAV3	HGNC	ENSG00000067798				120	1	0.826446	90	16	15.0943
OTOGL	0	genome.wustl.edu	37	12	80752108	80752108	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	12	80752108	80752108	T	A	SNP	OTOGL	ENST00000458043	human	ensembl	74_37	+1	known	missense	c.6073	p.C2025S	1.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_AbfB,superfamily_AbfB,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_Cys_knot_C,pfscan_Cys_knot_C	-	no_errors	OTOGL	HGNC	ENSG00000165899				37	0	0	21	11	34.375
PPFIA2	0	genome.wustl.edu	37	12	81719631	81719631	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	12	81719631	81719631	T	G	SNP	PPFIA2	ENST00000549396	human	ensembl	74_37	-1	known	missense	c.2567	p.E856A	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	PPFIA2	HGNC	ENSG00000139220				62	0	0	45	6	11.7647
A2ML1	0	genome.wustl.edu	37	12	9004872	9004872	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	12	9004872	9004872	A	C	SNP	A2ML1	ENST00000299698	human	ensembl	74_37	+1	known	missense	c.2530	p.S844R	0.976	pfam_SV_autoAg	pfam_A2M_comp,pfam_Macroglobln_a2,pfam_A2M_N_2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_SV_autoAg,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd	-	no_errors	A2ML1	HGNC	ENSG00000166535				281	1	0.35461	184	22	10.6796
FGD6	0	genome.wustl.edu	37	12	95566467	95566467	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	12	95566467	95566467	G	C	SNP	FGD6	ENST00000343958	human	ensembl	74_37	-1	known	missense	c.2495	p.S832C	0.987	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Znf_FYVE,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD6	HGNC	ENSG00000180263				244	0	0	201	32	13.7339
KLRF1	0	genome.wustl.edu	37	12	9995000	9995000	+	Silent	SNP	T	T	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	12	9995000	9995000	T	G	SNP	KLRF1	ENST00000279544	human	ensembl	74_37	+1	known	silent	c.558	p.T186	1.000	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	KLRF1	HGNC	ENSG00000150045				101	0	0	52	19	26.7606
NALCN	0	genome.wustl.edu	37	13	102051504	102051504	+	RNA	SNP	A	A	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	13	102051504	102051504	A	G	SNP	NALCN	ENST00000470333	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	NALCN	HGNC	ENSG00000102452				35	0	0	32	4	11.1111
MYO16	0	genome.wustl.edu	37	13	109859011	109859011	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	13	109859011	109859011	T	G	SNP	MYO16	ENST00000356711	human	ensembl	74_37	+1	known	missense	c.5404	p.L1802V	0.997	NULL	pfam_Myosin_head_motor_dom,pfam_Ankyrin_rpt,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Myosin_head_motor_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO16	HGNC	ENSG00000041515				101	0	0	63	12	16
SACS	0	genome.wustl.edu	37	13	23908520	23908520	+	Silent	SNP	A	A	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	13	23908520	23908520	A	C	SNP	SACS	ENST00000382292	human	ensembl	74_37	-1	known	silent	c.9495	p.T3165	0.994	NULL	pfam_HEPN,pfam_Ubiquitin_dom,superfamily_HATPase_ATP-bd,superfamily_DnaJ_domain,smart_HEPN,pfscan_HEPN,pfscan_DnaJ_domain,pfscan_Ubiquitin_supergroup	-	no_errors	SACS	HGNC	ENSG00000151835				50	0	0	39	7	15.2174
RNF17	0	genome.wustl.edu	37	13	25399903	25399903	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	13	25399903	25399903	A	C	SNP	RNF17	ENST00000255324	human	ensembl	74_37	+1	known	missense	c.2238	p.K746N	1.000	pfam_Tudor,smart_Tudor,pfscan_Tudor	pfam_Tudor,smart_Tudor,pfscan_Tudor,pfscan_Znf_RING	-	no_errors	RNF17	HGNC	ENSG00000132972				106	0	0	63	17	21.25
EEF1DP3	0	genome.wustl.edu	37	13	32527262	32527262	+	RNA	SNP	T	T	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	13	32527262	32527262	T	G	SNP	EEF1DP3	ENST00000428783	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	EEF1DP3	HGNC	ENSG00000229715				35	0	0	26	3	10.3448
SPG20	0	genome.wustl.edu	37	13	36888405	36888405	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	13	36888405	36888405	T	G	SNP	SPG20	ENST00000355182	human	ensembl	74_37	-1	known	missense	c.1442	p.K481T	1.000	pfam_Senescence/spartin	pfam_Senescence/spartin,pfam_MIT,smart_MIT	-	no_errors	SPG20	HGNC	ENSG00000133104				160	0	0	107	17	13.7097
GPC5	0	genome.wustl.edu	37	13	92560224	92560224	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	13	92560224	92560224	A	C	SNP	GPC5	ENST00000377067	human	ensembl	74_37	+1	known	missense	c.1314	p.K438N	1.000	pfam_Glypican	pfam_Glypican	-	no_errors	GPC5	HGNC	ENSG00000179399				66	0	0	66	12	15.3846
CHD8	0	genome.wustl.edu	37	14	21859686	21859686	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	14	21859686	21859686	C	T	SNP	CHD8	ENST00000399982	human	ensembl	74_37	-1	known	missense	c.7001	p.R2334Q	1.000	pfam_BRK_domain,smart_BRK_domain	pfam_SNF2_N,pfam_Chromo_domain,pfam_BRK_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD8	HGNC	ENSG00000100888				40	0	0	17	5	22.7273
TTC6	0	genome.wustl.edu	37	14	38311465	38311465	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	14	38311465	38311465	T	G	SNP	TTC6	ENST00000267368	human	ensembl	74_37	+1	known	missense	c.1532	p.L511R	1.000	smart_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC6	HGNC	ENSG00000139865				117	0	0	79	10	11.236
SLC35F4	0	genome.wustl.edu	37	14	58063439	58063439	+	Silent	SNP	T	T	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	14	58063439	58063439	T	G	SNP	SLC35F4	ENST00000339762	human	ensembl	74_37	-1	known	silent	c.177	p.T59	0.001	NULL	pfam_DMT,pfam_SLC35_F1/F2/F6	-	no_errors	SLC35F4	HGNC	ENSG00000151812				55	0	0	31	9	22.5
DACT1	0	genome.wustl.edu	37	14	59112838	59112838	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	14	59112838	59112838	G	C	SNP	DACT1	ENST00000335867	human	ensembl	74_37	+1	known	missense	c.1497	p.E499D	0.921	NULL	NULL	-	no_errors	DACT1	HGNC	ENSG00000165617				171	1	0.581395	98	20	16.9492
KCNH5	0	genome.wustl.edu	37	14	63416924	63416924	+	Silent	SNP	G	G	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	14	63416924	63416924	G	A	SNP	KCNH5	ENST00000322893	human	ensembl	74_37	-1	known	silent	c.1296	p.T432	1.000	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,pfam_cNMP-bd_dom,pfam_PAS_fold,superfamily_cNMP-bd-like,superfamily_PAS,smart_PAC,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,pfscan_PAS-assoc_C,tigrfam_PAS	-	no_errors	KCNH5	HGNC	ENSG00000140015				94	0	0	41	18	30.5085
KCNK10	0	genome.wustl.edu	37	14	88707082	88707082	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	14	88707082	88707082	G	A	SNP	KCNK10	ENST00000312350	human	ensembl	74_37	-1	known	missense	c.485	p.A162V	1.000	pfam_2pore_dom_K_chnl_dom	pfam_2pore_dom_K_chnl_dom,prints_2pore_dom_K_chnl_TREK,prints_2pore_dom_K_chnl,prints_2pore_dom_K_chnl_TRAAK,prints_2pore_dom_K_chnl_TASK	-	no_errors	KCNK10	HGNC	ENSG00000100433				176	0	0	112	31	21.6783
ATG2B	0	genome.wustl.edu	37	14	96777946	96777946	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	14	96777946	96777946	C	T	SNP	ATG2B	ENST00000359933	human	ensembl	74_37	-1	known	missense	c.3923	p.R1308H	1.000	NULL	pfam_Autophagy-rel_C	-	no_errors	ATG2B	HGNC	ENSG00000066739				70	0	0	51	8	13.5593
SNORD115-28	0	genome.wustl.edu	37	15	25467520	25467520	+	RNA	SNP	T	T	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	15	25467520	25467520	T	C	SNP	SNORD115-28	ENST00000363931	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.045	-	-	-	no_errors	SNORD115-28	HGNC	ENSG00000200801				205	0	0	100	22	18.0328
CATSPER2	0	genome.wustl.edu	37	15	43924471	43924471	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	15	43924471	43924471	A	T	SNP	CATSPER2	ENST00000321596	human	ensembl	74_37	-1	known	missense	c.1487	p.L496H	1.000	NULL	pfam_Ion_trans_dom	-	no_errors	CATSPER2	HGNC	ENSG00000166762				104	0	0	96	11	10.2804
SEMA6D	0	genome.wustl.edu	37	15	48062707	48062707	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	15	48062707	48062707	A	C	SNP	SEMA6D	ENST00000316364	human	ensembl	74_37	+1	known	missense	c.1947	p.E649D	1.000	NULL	pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,pfscan_Semap_dom	-	no_errors	SEMA6D	HGNC	ENSG00000137872				147	0	0	122	18	12.8571
ADAM10	0	genome.wustl.edu	37	15	58913755	58913755	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	15	58913755	58913755	T	C	SNP	ADAM10	ENST00000260408	human	ensembl	74_37	-1	known	missense	c.1426	p.S476G	1.000	pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,pfscan_Blood-coag_inhib_Disintegrin	pfam_Blood-coag_inhib_Disintegrin,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B	-	no_errors	ADAM10	HGNC	ENSG00000137845				118	0	0	76	43	36.1345
FOXB1	0	genome.wustl.edu	37	15	60297500	60297500	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	15	60297500	60297500	A	C	SNP	FOXB1	ENST00000396057	human	ensembl	74_37	+1	known	missense	c.338	p.K113T	0.992	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXB1	HGNC	ENSG00000171956				42	0	0	31	4	11.4286
NOX5	0	genome.wustl.edu	37	15	69327747	69327747	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	15	69327747	69327747	A	C	SNP	NOX5	ENST00000388866	human	ensembl	74_37	+1	known	missense	c.909	p.Q303H	0.459	pfam_Fe3_Rdtase_TM_dom	pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,superfamily_Riboflavin_synthase-like_b-brl,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	NOX5	HGNC	ENSG00000255346				43	0	0	38	5	11.6279
CCDC33	0	genome.wustl.edu	37	15	74572359	74572359	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	15	74572359	74572359	T	C	SNP	CCDC33	ENST00000321288	human	ensembl	74_37	+1	known	missense	c.1424	p.F475S	1.000	NULL	pfam_C2_dom,superfamily_C2_dom	-	no_errors	CCDC33	HGNC	ENSG00000140481				66	0	0	35	9	20.4545
WHAMM	0	genome.wustl.edu	37	15	83499800	83499800	+	Silent	SNP	A	A	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	15	83499800	83499800	A	G	SNP	WHAMM	ENST00000286760	human	ensembl	74_37	+1	known	silent	c.2091	p.P697	0.000	NULL	superfamily_tRNA-bd_arm,pfscan_WH2_dom	-	no_errors	WHAMM	HGNC	ENSG00000156232				210	0	0	213	37	14.8
ACAN	0	genome.wustl.edu	37	15	89391183	89391183	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	15	89391183	89391183	A	C	SNP	ACAN	ENST00000439576	human	ensembl	74_37	+1	known	missense	c.1646	p.K549T	1.000	pfam_Link,superfamily_C-type_lectin_fold,smart_Link,pfscan_Link	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_Sushi_SCR_CCP,pfam_EG-like_dom,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Link,smart_EG-like_dom,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like_dom,prints_Link	-	no_errors	ACAN	HGNC	ENSG00000157766				132	0	0	115	16	12.2137
C16orf62	0	genome.wustl.edu	37	16	19603148	19603148	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	16	19603148	19603148	T	G	SNP	C16orf62	ENST00000438132	human	ensembl	74_37	+1	known	missense	c.943	p.F315V	1.000	NULL	NULL	-	no_errors	C16orf62	HGNC	ENSG00000103544				120	0	0	83	23	21.6981
GPRC5B	0	genome.wustl.edu	37	16	19883494	19883494	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	16	19883494	19883494	T	C	SNP	GPRC5B	ENST00000537135	human	ensembl	74_37	-1	known	missense	c.752	p.K251R	1.000	pfam_GPCR_3_C,pfscan_GPCR_3_C	pfam_GPCR_3_C,pfscan_GPCR_3_C	-	no_errors	GPRC5B	HGNC	ENSG00000167191				71	0	0	55	17	23.6111
TSC2	0	genome.wustl.edu	37	16	2106669	2106669	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	16	2106669	2106669	G	A	SNP	TSC2	ENST00000219476	human	ensembl	74_37	+1	known	missense	c.673	p.V225M	1.000	pfam_Tuberin_N,superfamily_ARM-type_fold,prints_Tuberin	pfam_Tuberin-type_domain,pfam_Tuberin_N,pfam_Rap_GAP_dom,superfamily_ARM-type_fold,pfscan_Rap_GAP_dom,prints_Tuberin	-	no_errors	TSC2	HGNC	ENSG00000103197				60	0	0	35	10	22.2222
DCTN5	0	genome.wustl.edu	37	16	23678440	23678440	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	16	23678440	23678440	A	C	SNP	DCTN5	ENST00000300087	human	ensembl	74_37	+1	known	missense	c.524	p.K175T	1.000	superfamily_Trimer_LpxA-like	superfamily_Trimer_LpxA-like	-	no_errors	DCTN5	HGNC	ENSG00000166847				85	0	0	58	11	15.942
SEZ6L2	0	genome.wustl.edu	37	16	29897033	29897033	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	16	29897033	29897033	C	T	SNP	SEZ6L2	ENST00000308713	human	ensembl	74_37	-1	known	missense	c.1246	p.V416M	0.927	superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_Sushi_SCR_CCP,pfam_CUB_dom,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	SEZ6L2	HGNC	ENSG00000174938				80	0	0	32	23	41.8182
OR2C1	0	genome.wustl.edu	37	16	3406818	3406818	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	16	3406818	3406818	G	A	SNP	OR2C1	ENST00000304936	human	ensembl	74_37	+1	known	missense	c.878	p.R293Q	0.995	prints_Olfact_rcpt,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2C1	HGNC	ENSG00000168158				51	0	0	29	17	36.9565
GABARAPL2	0	genome.wustl.edu	37	16	75602021	75602021	+	Silent	SNP	G	G	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	16	75602021	75602021	G	A	SNP	GABARAPL2	ENST00000037243	human	ensembl	74_37	+1	known	silent	c.177	p.Q59	1.000	pfam_Atg8_fam,pfam_Atg12	pfam_Atg8_fam,pfam_Atg12	-	no_errors	GABARAPL2	HGNC	ENSG00000034713				204	0	0	148	36	19.5652
DNAAF1	0	genome.wustl.edu	37	16	84199569	84199569	+	RNA	SNP	C	C	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	16	84199569	84199569	C	T	SNP	DNAAF1	ENST00000563818	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	DNAAF1	HGNC	ENSG00000154099				108	0	0	87	18	17.1429
MYH2	0	genome.wustl.edu	37	17	10428647	10428647	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	17	10428647	10428647	G	A	SNP	MYH2	ENST00000245503	human	ensembl	74_37	-1	known	missense	c.4556	p.T1519M	1.000	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_Ribosomal_L29,superfamily_t-SNARE,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH2	HGNC	ENSG00000125414				87	0	0	46	13	22.0339
EFCAB5	0	genome.wustl.edu	37	17	28417521	28417521	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	17	28417521	28417521	C	T	SNP	EFCAB5	ENST00000394835	human	ensembl	74_37	+1	known	missense	c.3766	p.R1256C	1.000	NULL	pfscan_EF_hand_dom	-	no_errors	EFCAB5	HGNC	ENSG00000176927				170	0	0	102	26	20.3125
CCL8	0	genome.wustl.edu	37	17	32647919	32647919	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	17	32647919	32647919	A	C	SNP	CCL8	ENST00000394620	human	ensembl	74_37	+1	known	missense	c.293	p.K98T	0.001	superfamily_Chemokine_IL8-like_dom	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom	-	no_errors	CCL8	HGNC	ENSG00000108700				38	0	0	20	9	31.0345
ABCA8	0	genome.wustl.edu	37	17	66898948	66898948	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	17	66898948	66898948	A	C	SNP	ABCA8	ENST00000430352	human	ensembl	74_37	-1	known	missense	c.2670	p.S890R	0.000	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA8	HGNC	ENSG00000141338				117	0	0	61	14	18.6667
TP53	0	genome.wustl.edu	37	17	7577120	7577120	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	17	7577120	7577120	C	T	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	missense	c.818	p.R273H	0.864	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510				38	0	0	8	13	61.9048
TMC6	0	genome.wustl.edu	37	17	76113969	76113969	+	Silent	SNP	G	G	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	17	76113969	76113969	G	T	SNP	TMC6	ENST00000322914	human	ensembl	74_37	-1	known	silent	c.1935	p.A645	0.521	pfam_TMC	pfam_TMC	-	no_errors	TMC6	HGNC	ENSG00000141524				26	0	0	22	2	8.33333
DNAH2	0	genome.wustl.edu	37	17	7684068	7684068	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	17	7684068	7684068	C	T	SNP	DNAH2	ENST00000389173	human	ensembl	74_37	+1	known	missense	c.5971	p.R1991C	1.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH2	HGNC	ENSG00000183914				99	0	0	56	23	29.1139
ZNF521	0	genome.wustl.edu	37	18	22806982	22806982	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	18	22806982	22806982	C	T	SNP	ZNF521	ENST00000361524	human	ensembl	74_37	-1	known	missense	c.900	p.M300I	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF521	HGNC	ENSG00000198795				77	0	0	61	5	7.57576
SLC39A6	0	genome.wustl.edu	37	18	33706542	33706542	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	18	33706542	33706542	T	G	SNP	SLC39A6	ENST00000269187	human	ensembl	74_37	-1	known	missense	c.429	p.K143N	0.856	NULL	pfam_ZIP	-	no_errors	SLC39A6	HGNC	ENSG00000141424				96	0	0	62	19	23.4568
CDH7	0	genome.wustl.edu	37	18	63481784	63481784	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	18	63481784	63481784	G	C	SNP	CDH7	ENST00000323011	human	ensembl	74_37	+1	known	missense	c.569	p.R190T	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH7	HGNC	ENSG00000081138				109	0	0	65	22	25.2874
SOGA2	0	genome.wustl.edu	37	18	8783803	8783803	+	Silent	SNP	G	G	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	18	8783803	8783803	G	A	SNP	SOGA2	ENST00000359865	human	ensembl	74_37	+1	known	silent	c.693	p.E231	1.000	pfam_SOGA	pfam_SOGA	-	no_errors	SOGA2	HGNC	ENSG00000168502				32	0	0	22	5	18.5185
PPAN	0	genome.wustl.edu	37	19	10221753	10221753	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	19	10221753	10221753	G	C	SNP	PPAN	ENST00000253107	human	ensembl	74_37	+1	known	missense	c.1334	p.G445A	0.001	NULL	pfam_Brix,superfamily_Anticodon-bd,smart_Brix,pfscan_Brix	-	no_errors	PPAN	HGNC	ENSG00000130810				64	0	0	30	3	9.09091
CALR	0	genome.wustl.edu	37	19	13051267	13051267	+	Splice_Site	SNP	G	G	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	19	13051267	13051267	G	A	SNP	CALR	ENST00000316448	human	ensembl	74_37	+1	known	splice_site	c.702+1	e5+1	1.000	-	-	-	no_errors	CALR	HGNC	ENSG00000179218				46	0	0	26	11	29.7297
OR7A17	0	genome.wustl.edu	37	19	14991857	14991857	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	19	14991857	14991857	A	T	SNP	OR7A17	ENST00000327462	human	ensembl	74_37	-1	known	missense	c.311	p.F104Y	0.094	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR7A17	HGNC	ENSG00000185385				97	0	0	59	16	21.3333
TM6SF2	0	genome.wustl.edu	37	19	19381881	19381881	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	19	19381881	19381881	G	A	SNP	TM6SF2	ENST00000389363	human	ensembl	74_37	-1	known	missense	c.149	p.A50V	0.382	NULL	pfam_Transmembrane_6/97	-	no_errors	TM6SF2	HGNC	ENSG00000213996				95	0	0	57	20	25.974
ZNF43	0	genome.wustl.edu	37	19	21992308	21992308	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	19	21992308	21992308	T	A	SNP	ZNF43	ENST00000354959	human	ensembl	74_37	-1	known	missense	c.531	p.K177N	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF43	HGNC	ENSG00000198521				45	0	0	25	7	21.875
ZNF99	0	genome.wustl.edu	37	19	22951153	22951153	+	Silent	SNP	T	T	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	19	22951153	22951153	T	C	SNP	ZNF99	ENST00000397104	human	ensembl	74_37	-1	known	silent	c.243	p.K81	0.045	superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF99	HGNC	ENSG00000213973				62	0	0	23	7	23.3333
TSHZ3	0	genome.wustl.edu	37	19	31769734	31769734	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	19	31769734	31769734	T	A	SNP	TSHZ3	ENST00000240587	human	ensembl	74_37	-1	known	missense	c.965	p.K322M	1.000	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	TSHZ3	HGNC	ENSG00000121297				143	0	0	124	11	8.14815
KMT2B	0	genome.wustl.edu	37	19	36218419	36218419	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	19	36218419	36218419	C	T	SNP	KMT2B	ENST00000222270	human	ensembl	74_37	+1	known	missense	c.4198	p.R1400C	1.000	pirsf_MeTrfase_trithorax,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain	pirsf_MeTrfase_trithorax,pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	KMT2B	Uniprot_gn	ENSG00000272333				160	1	0.621118	130	23	15.0327
EGLN2	0	genome.wustl.edu	37	19	41307126	41307126	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	19	41307126	41307126	G	A	SNP	EGLN2	ENST00000303961	human	ensembl	74_37	+1	known	missense	c.649	p.G217R	1.000	smart_Pro_4_hyd_alph	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	EGLN2	HGNC	ENSG00000269858				135	0	0	81	45	35.7143
SHC2	0	genome.wustl.edu	37	19	434854	434854	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	19	434854	434854	G	A	SNP	SHC2	ENST00000264554	human	ensembl	74_37	-1	known	missense	c.965	p.P322L	0.813	pfscan_PTB/PI_dom	pfam_PTB/PI_dom,pfam_SH2,smart_PTB/PI_dom,smart_SH2,pfscan_PTB/PI_dom,pfscan_SH2,prints_PID_Shc-like,prints_SH2	-	no_errors	SHC2	HGNC	ENSG00000129946				76	0	0	55	17	23.6111
PSG2	0	genome.wustl.edu	37	19	43570731	43570731	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	19	43570731	43570731	A	G	SNP	PSG2	ENST00000406487	human	ensembl	74_37	-1	known	missense	c.986	p.L329P	0.001	NULL	pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	PSG2	HGNC	ENSG00000242221				151	0	0	127	21	14.1892
ZNF404	0	genome.wustl.edu	37	19	44377328	44377328	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	19	44377328	44377328	C	A	SNP	ZNF404	ENST00000587539	human	ensembl	74_37	-1	known	missense	c.1038	p.K346N	0.010	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF404	HGNC	ENSG00000176222				103	0	0	87	13	13
ZNF285	0	genome.wustl.edu	37	19	44891483	44891483	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	19	44891483	44891483	T	G	SNP	ZNF285	ENST00000330997	human	ensembl	74_37	-1	known	missense	c.924	p.K308N	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF285	HGNC	ENSG00000267508				175	0	0	170	25	12.8205
PRKD2	0	genome.wustl.edu	37	19	47192802	47192802	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	19	47192802	47192802	T	C	SNP	PRKD2	ENST00000291281	human	ensembl	74_37	-1	known	missense	c.1963	p.I655V	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_DAG/PE-bd	-	no_errors	PRKD2	HGNC	ENSG00000105287				29	0	0	21	12	36.3636
FKRP	0	genome.wustl.edu	37	19	47259669	47259669	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	19	47259669	47259669	C	T	SNP	FKRP	ENST00000318584	human	ensembl	74_37	+1	known	missense	c.962	p.A321V	0.998	NULL	pfam_LicD	-	no_errors	FKRP	HGNC	ENSG00000181027				12	0	0	10	3	23.0769
NPAS1	0	genome.wustl.edu	37	19	47542709	47542709	+	Silent	SNP	T	T	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	19	47542709	47542709	T	C	SNP	NPAS1	ENST00000449844	human	ensembl	74_37	+1	known	silent	c.849	p.L283	0.289	NULL	pfam_PAS_fold_3,pfam_PAS_fold,pfam_bHLH_dom,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,pfscan_PAS,pfscan_bHLH_dom	-	no_errors	NPAS1	HGNC	ENSG00000130751				65	0	0	51	10	16.3934
MADCAM1	0	genome.wustl.edu	37	19	501749	501749	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	19	501749	501749	G	A	SNP	MADCAM1	ENST00000215637	human	ensembl	74_37	+1	known	missense	c.748	p.D250N	0.000	NULL	pfam_Adhes-Ig-like,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	MADCAM1	HGNC	ENSG00000099866				27	0	0	22	5	18.5185
ZNF613	0	genome.wustl.edu	37	19	52448445	52448445	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	19	52448445	52448445	T	G	SNP	ZNF613	ENST00000293471	human	ensembl	74_37	+1	known	missense	c.1309	p.F437V	0.981	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF613	HGNC	ENSG00000176024				76	0	0	70	11	13.5802
LILRA4	0	genome.wustl.edu	37	19	54849465	54849465	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	19	54849465	54849465	C	T	SNP	LILRA4	ENST00000291759	human	ensembl	74_37	-1	known	missense	c.397	p.V133M	0.808	smart_Ig_sub,pirsf_A1B_glyco/leuk_Ig-like_rcpt,pfscan_Ig-like_dom	smart_Ig_sub,smart_Ig_sub2,pirsf_A1B_glyco/leuk_Ig-like_rcpt,pfscan_Ig-like_dom	-	no_errors	LILRA4	HGNC	ENSG00000239961				82	0	0	64	11	14.6667
IL11	0	genome.wustl.edu	37	19	55880255	55880255	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	19	55880255	55880255	G	A	SNP	IL11	ENST00000264563	human	ensembl	74_37	-1	known	missense	c.62	p.A21V	0.863	pfam_IL-11	pfam_IL-11,superfamily_4_helix_cytokine-like_core,prints_IL-11_mml,prints_IL-11	-	no_errors	IL11	HGNC	ENSG00000095752				21	0	0	9	4	30.7692
ZNF814	0	genome.wustl.edu	37	19	58385762	58385762	+	Silent	SNP	C	C	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	19	58385762	58385762	C	G	SNP	ZNF814	ENST00000435989	human	ensembl	74_37	-1	known	silent	c.996	p.S332	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF814	HGNC	ENSG00000204514				8	0	0	4	2	33.3333
MUC16	0	genome.wustl.edu	37	19	9058990	9058990	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	19	9058990	9058990	T	G	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.28456	p.T9486P	0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				248	0	0	138	28	16.8675
ZNF317	0	genome.wustl.edu	37	19	9271459	9271459	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	19	9271459	9271459	C	T	SNP	ZNF317	ENST00000247956	human	ensembl	74_37	+1	known	missense	c.1138	p.H380Y	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF317	HGNC	ENSG00000130803				54	0	0	22	13	37.1429
AFF3	0	genome.wustl.edu	37	2	100203726	100203726	+	Silent	SNP	G	G	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	2	100203726	100203726	G	A	SNP	AFF3	ENST00000356421	human	ensembl	74_37	-1	known	silent	c.2556	p.D852	0.219	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF3	HGNC	ENSG00000144218				177	0	0	235	23	8.91473
IL18R1	0	genome.wustl.edu	37	2	102992432	102992432	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	2	102992432	102992432	A	C	SNP	IL18R1	ENST00000233957	human	ensembl	74_37	+1	known	missense	c.534	p.E178D	0.017	smart_Ig_sub	pfam_TIR_dom,superfamily_TIR_dom,smart_Ig_sub,smart_TIR_dom,pfscan_TIR_dom,pfscan_Ig-like_dom,prints_IL-1_rcpt_I/II-typ	-	no_errors	IL18R1	HGNC	ENSG00000115604				66	0	0	81	10	10.989
ZEB2	0	genome.wustl.edu	37	2	145157299	145157299	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	2	145157299	145157299	C	G	SNP	ZEB2	ENST00000303660	human	ensembl	74_37	-1	known	missense	c.1455	p.K485N	1.000	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZEB2	HGNC	ENSG00000169554				106	0	0	69	12	14.8148
ZEB2	0	genome.wustl.edu	37	2	145157311	145157311	+	Silent	SNP	T	T	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	2	145157311	145157311	T	C	SNP	ZEB2	ENST00000303660	human	ensembl	74_37	-1	known	silent	c.1443	p.E481	1.000	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZEB2	HGNC	ENSG00000169554				112	0	0	70	17	19.5402
NEB	0	genome.wustl.edu	37	2	152470950	152470950	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	2	152470950	152470950	T	A	SNP	NEB	ENST00000397345	human	ensembl	74_37	-1	known	missense	c.11441	p.K3814M	1.000	NULL	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,pfscan_Nebulin_35r-motif,pfscan_SH3_domain,prints_Nebulin	-	no_errors	NEB	HGNC	ENSG00000183091				366	0	0	231	70	23.2558
KCNH7	0	genome.wustl.edu	37	2	163693107	163693107	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	2	163693107	163693107	C	A	SNP	KCNH7	ENST00000332142	human	ensembl	74_37	-1	known	missense	c.247	p.A83S	1.000	pfam_PAS_fold_3,superfamily_PAS,tigrfam_PAS	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_2pore_dom_K_chnl_dom,pfam_PAS_fold_3,superfamily_cNMP-bd-like,superfamily_PAS,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,tigrfam_PAS	-	no_errors	KCNH7	HGNC	ENSG00000184611				85	0	0	47	16	25.3968
PXDN	0	genome.wustl.edu	37	2	1647273	1647273	+	Silent	SNP	G	G	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	2	1647273	1647273	G	T	SNP	PXDN	ENST00000252804	human	ensembl	74_37	-1	known	silent	c.3819	p.I1273	0.994	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,prints_Haem_peroxidase_animal_subgr,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like_dom	-	no_errors	PXDN	HGNC	ENSG00000130508				94	0	0	66	9	12
PXDN	0	genome.wustl.edu	37	2	1652724	1652724	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	2	1652724	1652724	C	T	SNP	PXDN	ENST00000252804	human	ensembl	74_37	-1	known	missense	c.2828	p.R943Q	0.998	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like_dom	-	no_errors	PXDN	HGNC	ENSG00000130508				26	0	0	27	3	10
PHOSPHO2	0	genome.wustl.edu	37	2	170557595	170557595	+	Silent	SNP	T	T	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	2	170557595	170557595	T	G	SNP	PHOSPHO2	ENST00000359744	human	ensembl	74_37	+1	known	silent	c.114	p.S38	0.995	pfam_Pase_PHOSPHO-typ,superfamily_HAD-like_dom,pirsf_Pase_PHOSPHO-typ,tigrfam_PyrdxlP_Pase-rel,tigrfam_HAD-SF_hydro_IB_PSP-like	pfam_Pase_PHOSPHO-typ,superfamily_HAD-like_dom,pirsf_Pase_PHOSPHO-typ,tigrfam_PyrdxlP_Pase-rel,tigrfam_HAD-SF_hydro_IB_PSP-like	-	no_errors	PHOSPHO2	HGNC	ENSG00000144362				112	0	0	85	16	15.8416
HOXD10	0	genome.wustl.edu	37	2	176983956	176983956	+	Silent	SNP	T	T	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	2	176983956	176983956	T	G	SNP	HOXD10	ENST00000249501	human	ensembl	74_37	+1	known	silent	c.1020	p.S340	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,prints_Homeobox_metazoa,pfscan_Homeobox_dom	-	no_errors	HOXD10	HGNC	ENSG00000128710				44	0	0	15	10	40
ITGAV	0	genome.wustl.edu	37	2	187521058	187521058	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	2	187521058	187521058	G	A	SNP	ITGAV	ENST00000261023	human	ensembl	74_37	+1	known	missense	c.1649	p.S550N	0.083	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGAV	HGNC	ENSG00000138448				194	0	0	117	29	19.863
NT5C1B	0	genome.wustl.edu	37	2	18765460	18765460	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	2	18765460	18765460	T	C	SNP	NT5C1B	ENST00000359846	human	ensembl	74_37	-1	known	missense	c.965	p.D322G	0.998	NULL	pfam_5-nucleotidase	-	no_errors	NT5C1B	HGNC	ENSG00000185013				167	0	0	111	23	17.1642
MFSD6	0	genome.wustl.edu	37	2	191301390	191301390	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	2	191301390	191301390	T	G	SNP	MFSD6	ENST00000281416	human	ensembl	74_37	+1	known	missense	c.635	p.V212G	0.000	superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	MFSD6	HGNC	ENSG00000151690				101	0	0	65	12	15.5844
TMEM237	0	genome.wustl.edu	37	2	202489002	202489002	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	2	202489002	202489002	C	G	SNP	TMEM237	ENST00000409883	human	ensembl	74_37	-1	known	missense	c.1203	p.E401D	0.042	NULL	NULL	-	no_errors	TMEM237	HGNC	ENSG00000155755				103	0	0	47	12	20.339
DYTN	0	genome.wustl.edu	37	2	207527659	207527659	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	2	207527659	207527659	A	G	SNP	DYTN	ENST00000452335	human	ensembl	74_37	-1	known	missense	c.1601	p.L534P	0.062	NULL	pfam_EF-hand_dom_typ2,pfam_EF-hand_dom_typ1,pfam_Znf_ZZ,smart_Znf_ZZ,pfscan_Znf_ZZ	-	no_errors	DYTN	HGNC	ENSG00000232125				341	1	0.292398	174	49	21.9731
APOB	0	genome.wustl.edu	37	2	21256384	21256384	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	2	21256384	21256384	T	C	SNP	APOB	ENST00000233242	human	ensembl	74_37	-1	known	missense	c.911	p.K304R	0.001	pfam_Lipid_transpt_N,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674				157	0	0	116	20	14.7059
CXCR2P1	0	genome.wustl.edu	37	2	218925211	218925211	+	RNA	SNP	G	G	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	2	218925211	218925211	G	C	SNP	CXCR2P1	ENST00000439871	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.982	-	-	-	no_errors	CXCR2P1	HGNC	ENSG00000229754				74	0	0	63	10	13.6986
COL6A3	0	genome.wustl.edu	37	2	238283329	238283329	+	Silent	SNP	C	C	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	2	238283329	238283329	C	G	SNP	COL6A3	ENST00000295550	human	ensembl	74_37	-1	known	silent	c.3405	p.L1135	0.833	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,smart_VWF_A,smart_Prot_inh_Kunz-m,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL6A3	HGNC	ENSG00000163359				68	0	0	61	7	10.2941
SNED1	0	genome.wustl.edu	37	2	241969917	241969917	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	2	241969917	241969917	T	G	SNP	SNED1	ENST00000310397	human	ensembl	74_37	+1	known	missense	c.430	p.F144V	1.000	smart_Nidogen_extracell_dom	pfam_EG-like_dom,pfam_Fibronectin_type3,pfam_Nidogen_extracell_dom,pfam_EGF_extracell,pfam_EGF-like_Ca-bd_dom,superfamily_Fibronectin_type3,superfamily_Sushi_SCR_CCP,smart_Nidogen_extracell_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Sushi_SCR_CCP,smart_Fibronectin_type3,pfscan_EG-like_dom,pfscan_Fibronectin_type3,pfscan_Sushi_SCR_CCP	-	no_errors	SNED1	HGNC	ENSG00000162804				44	0	0	33	5	13.1579
ITSN2	0	genome.wustl.edu	37	2	24507636	24507636	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	2	24507636	24507636	A	C	SNP	ITSN2	ENST00000355123	human	ensembl	74_37	-1	known	missense	c.1940	p.L647R	1.000	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_DH-domain,pfam_C2_dom,superfamily_DH-domain,superfamily_C2_dom,superfamily_SH3_domain,smart_EPS15_homology,smart_EF_hand_dom,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_C2_dom,pfscan_EF_hand_dom,pfscan_EPS15_homology,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain,prints_SH3_domain,prints_p67phox	-	no_errors	ITSN2	HGNC	ENSG00000198399				109	0	0	93	28	23.1405
COLEC11	0	genome.wustl.edu	37	2	3691528	3691528	+	Silent	SNP	C	C	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	2	3691528	3691528	C	T	SNP	COLEC11	ENST00000418971	human	ensembl	74_37	+1	known	silent	c.678	p.G226	0.181	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,pfam_Collagen,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	COLEC11	HGNC	ENSG00000118004				63	0	0	23	11	32.3529
PRKD3	0	genome.wustl.edu	37	2	37483980	37483980	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	2	37483980	37483980	T	G	SNP	PRKD3	ENST00000234179	human	ensembl	74_37	-1	known	missense	c.2238	p.E746D	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_DAG/PE-bd	-	no_errors	PRKD3	HGNC	ENSG00000115825				151	0	0	105	32	23.3577
FSHR	0	genome.wustl.edu	37	2	49190889	49190889	+	Silent	SNP	T	T	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	2	49190889	49190889	T	C	SNP	FSHR	ENST00000406846	human	ensembl	74_37	-1	known	silent	c.1071	p.E357	1.000	prints_Gphrmn_rcpt_fam	pfam_GPCR_Rhodpsn,pfam_GnHR_TM,pfam_LRR-contain_N,pfam_Leu-rich_rpt,smart_LRR-contain_N,pfscan_GPCR_Rhodpsn_7TM,prints_FSH_rcpt,prints_Gphrmn_rcpt_fam,prints_GPCR_Rhodpsn,prints_TSH_rcpt	-	no_errors	FSHR	HGNC	ENSG00000170820				87	0	0	89	26	22.6087
ATP6V1B1	0	genome.wustl.edu	37	2	71192185	71192185	+	Silent	SNP	C	C	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	2	71192185	71192185	C	T	SNP	ATP6V1B1	ENST00000234396	human	ensembl	74_37	+1	known	silent	c.1476	p.A492	0.882	pfam_ATPase_F1/V1/A1-cplx_a/bsu_C,tigrfam_ATPase_V1-cplx_bsu	pfam_ATPase_F1/V1/A1_a/bsu_nucl-bd,pfam_ATPase_F1/V1/A1-cplx_a/bsu_C,pfam_ATPase_F1_a/bsu_N,superfamily_P-loop_NTPase,superfamily_ATPase_F1_a/bsu_N,superfamily_ATPase_F1/V1/A1-cplx_a/bsu_C,tigrfam_ATPase_V1-cplx_bsu	-	no_errors	ATP6V1B1	HGNC	ENSG00000116039				96	0	0	75	13	14.7727
ALMS1	0	genome.wustl.edu	37	2	73835667	73835667	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	2	73835667	73835667	A	C	SNP	ALMS1	ENST00000264448	human	ensembl	74_37	+1	known	missense	c.12425	p.K4142T	0.015	NULL	NULL	-	no_errors	ALMS1	HGNC	ENSG00000116127				74	0	0	51	17	25
CNGA3	0	genome.wustl.edu	37	2	99013210	99013210	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	2	99013210	99013210	A	C	SNP	CNGA3	ENST00000272602	human	ensembl	74_37	+1	known	missense	c.1577	p.K526T	1.000	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGA3	HGNC	ENSG00000144191				156	0	0	172	15	8.02139
KIAA1211L	0	genome.wustl.edu	37	2	99439852	99439852	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	2	99439852	99439852	G	A	SNP	KIAA1211L	ENST00000397899	human	ensembl	74_37	-1	known	missense	c.884	p.P295L	0.000	NULL	NULL	-	no_errors	KIAA1211L	HGNC	ENSG00000196872				11	0	0	9	4	30.7692
NINL	0	genome.wustl.edu	37	20	25459831	25459831	+	Silent	SNP	G	G	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	20	25459831	25459831	G	A	SNP	NINL	ENST00000278886	human	ensembl	74_37	-1	known	silent	c.1929	p.Y643	0.117	NULL	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	NINL	HGNC	ENSG00000101004				116	0	0	144	19	11.6564
VPS16	0	genome.wustl.edu	37	20	2845684	2845684	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	20	2845684	2845684	A	C	SNP	VPS16	ENST00000380445	human	ensembl	74_37	+1	known	missense	c.1987	p.N663H	1.000	pfam_Vps16_C,pirsf_VPS16	pfam_Vps16_N,pfam_Vps16_C,pirsf_VPS16	-	no_errors	VPS16	HGNC	ENSG00000215305				112	0	0	136	17	11.1111
DNMT3B	0	genome.wustl.edu	37	20	31386384	31386384	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	20	31386384	31386384	C	T	SNP	DNMT3B	ENST00000328111	human	ensembl	74_37	+1	known	missense	c.1609	p.R537W	1.000	superfamily_Znf_FYVE_PHD	pfam_PWWP_dom,pfam_C5_MeTfrase,superfamily_Znf_FYVE_PHD,smart_PWWP_dom,pfscan_PWWP_dom	-	no_errors	DNMT3B	HGNC	ENSG00000088305				80	0	0	79	25	24.0385
BPIFB2	0	genome.wustl.edu	37	20	31601629	31601629	+	Silent	SNP	C	C	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	20	31601629	31601629	C	T	SNP	BPIFB2	ENST00000170150	human	ensembl	74_37	+1	known	silent	c.322	p.L108	1.000	pfam_Lipid-bd_serum_glycop_N,superfamily_Bactericidal_perm-incr_a/b_dom	pfam_Lipid-bd_serum_glycop_C,pfam_Lipid-bd_serum_glycop_N,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_C	-	no_errors	BPIFB2	HGNC	ENSG00000078898				80	0	0	82	6	6.81818
SLC32A1	0	genome.wustl.edu	37	20	37357171	37357171	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	20	37357171	37357171	A	C	SNP	SLC32A1	ENST00000217420	human	ensembl	74_37	+1	known	missense	c.1467	p.Q489H	0.990	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC32A1	HGNC	ENSG00000101438				42	0	0	49	5	9.25926
SLC12A5	0	genome.wustl.edu	37	20	44685864	44685864	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	20	44685864	44685864	G	A	SNP	SLC12A5	ENST00000454036	human	ensembl	74_37	+1	known	missense	c.3250	p.V1084M	1.000	tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease/SLC12A_dom,prints_KCL_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A5	HGNC	ENSG00000124140				120	0	0	146	14	8.75
DDX27	0	genome.wustl.edu	37	20	47851592	47851592	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	20	47851592	47851592	A	C	SNP	DDX27	ENST00000371764	human	ensembl	74_37	+1	known	missense	c.1487	p.N496T	1.000	pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_C,pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX27	HGNC	ENSG00000124228				64	0	0	63	11	14.8649
KCNG1	0	genome.wustl.edu	37	20	49620993	49620993	+	Silent	SNP	G	G	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	20	49620993	49620993	G	A	SNP	KCNG1	ENST00000371571	human	ensembl	74_37	-1	known	silent	c.1125	p.R375	0.998	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCNG1	HGNC	ENSG00000026559				17	0	0	16	7	30.4348
SALL4	0	genome.wustl.edu	37	20	50406871	50406871	+	Silent	SNP	C	C	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	20	50406871	50406871	C	T	SNP	SALL4	ENST00000217086	human	ensembl	74_37	-1	known	silent	c.2151	p.S717	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SALL4	HGNC	ENSG00000101115				54	0	0	47	19	28.7879
APCDD1L	0	genome.wustl.edu	37	20	57035940	57035940	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	20	57035940	57035940	G	A	SNP	APCDD1L	ENST00000439429	human	ensembl	74_37	-1	known	missense	c.1445	p.S482L	0.000	NULL	NULL	-	no_errors	APCDD1L	HGNC	ENSG00000198768				94	0	0	130	15	10.3448
SYCP2	0	genome.wustl.edu	37	20	58448927	58448927	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	20	58448927	58448927	G	A	SNP	SYCP2	ENST00000357552	human	ensembl	74_37	-1	known	missense	c.3539	p.P1180L	0.036	NULL	NULL	-	no_errors	SYCP2	HGNC	ENSG00000196074				59	0	0	51	7	12.069
ARFGAP1	0	genome.wustl.edu	37	20	61910326	61910326	+	Silent	SNP	C	C	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	20	61910326	61910326	C	T	SNP	ARFGAP1	ENST00000353546	human	ensembl	74_37	+1	known	silent	c.606	p.N202	0.271	NULL	pfam_ArfGAP,smart_ArfGAP,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	ARFGAP1	HGNC	ENSG00000101199				58	0	0	44	17	27.8689
HAO1	0	genome.wustl.edu	37	20	7920962	7920962	+	Silent	SNP	A	A	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	20	7920962	7920962	A	G	SNP	HAO1	ENST00000378789	human	ensembl	74_37	-1	known	silent	c.108	p.T36	0.007	pfam_FMN-dep_DH,pirsf_Alpha-hydoxy_acid_DH_FMN	pfam_FMN-dep_DH,pfam_Glu_synth_centr_C,pirsf_Alpha-hydoxy_acid_DH_FMN	-	no_errors	HAO1	HGNC	ENSG00000101323				64	0	0	75	12	13.7931
TPTE	0	genome.wustl.edu	37	21	10906985	10906985	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	21	10906985	10906985	T	G	SNP	TPTE	ENST00000361285	human	ensembl	74_37	-1	known	missense	c.1576	p.I526L	0.849	pfam_Tensin_phosphatase_C2-dom,superfamily_C2_dom,pfscan_Tensin_phosphatase_C2-dom	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Ion_trans_dom,superfamily_C2_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TPTE	HGNC	ENSG00000166157				79	0	0	70	7	9.09091
GABPA	0	genome.wustl.edu	37	21	27121347	27121347	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	21	27121347	27121347	C	A	SNP	GABPA	ENST00000354828	human	ensembl	74_37	+1	known	missense	c.223	p.L75M	1.000	pfam_GABP_asu_N,pirsf_TF_GA-bd_asu	pfam_GABP_asu_N,pfam_Ets_dom,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets_dom,pirsf_TF_GA-bd_asu,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	GABPA	HGNC	ENSG00000154727				76	0	0	49	8	14.0351
TIAM1	0	genome.wustl.edu	37	21	32554938	32554938	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	21	32554938	32554938	A	G	SNP	TIAM1	ENST00000286827	human	ensembl	74_37	-1	known	missense	c.2687	p.L896P	0.992	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Raf-like_ras-bd,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_Pleckstrin_homology,smart_Raf-like_ras-bd,smart_PDZ,smart_DH-domain,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Raf-like_ras-bd,pfscan_DH-domain	-	no_errors	TIAM1	HGNC	ENSG00000156299				75	0	0	46	5	9.80392
ADRBK2	0	genome.wustl.edu	37	22	26110408	26110408	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	22	26110408	26110408	T	G	SNP	ADRBK2	ENST00000324198	human	ensembl	74_37	+1	known	missense	c.1525	p.F509V	1.000	superfamily_Kinase-like_dom,smart_AGC-kinase_C,prints_GPCR_kinase	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_RGS_dom,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Regulat_G_prot_signal_superfam,pfscan_Prot_kinase_dom,prints_GPCR_kinase	-	no_errors	ADRBK2	HGNC	ENSG00000100077				83	0	0	56	16	22.2222
CRYBA4	0	genome.wustl.edu	37	22	27024279	27024279	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	22	27024279	27024279	T	G	SNP	CRYBA4	ENST00000354760	human	ensembl	74_37	+1	known	missense	c.328	p.F110V	1.000	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	CRYBA4	HGNC	ENSG00000196431				144	0	0	82	18	18
SYNGR1	0	genome.wustl.edu	37	22	39772142	39772142	+	Silent	SNP	C	C	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	22	39772142	39772142	C	T	SNP	SYNGR1	ENST00000328933	human	ensembl	74_37	+1	known	silent	c.423	p.N141	0.994	pfam_Marvel,pirsf_Synaptogyrin	pfam_Marvel,pirsf_Synaptogyrin	-	no_errors	SYNGR1	HGNC	ENSG00000100321				150	0	0	88	21	19.2661
EFCAB6	0	genome.wustl.edu	37	22	44062988	44062988	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	22	44062988	44062988	T	G	SNP	EFCAB6	ENST00000262726	human	ensembl	74_37	-1	known	missense	c.1979	p.K660T	0.045	smart_EF_hand_dom,pfscan_EF_hand_dom	pfam_EF_hand_Ca-bd_contain_6,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	EFCAB6	HGNC	ENSG00000186976				124	0	0	45	16	26.2295
ABI3BP	0	genome.wustl.edu	37	3	100523678	100523678	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	3	100523678	100523678	G	A	SNP	ABI3BP	ENST00000284322	human	ensembl	74_37	-1	known	missense	c.1705	p.P569S	0.997	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	ABI3BP	HGNC	ENSG00000154175				96	0	0	83	15	15.3061
POGLUT1	0	genome.wustl.edu	37	3	119205779	119205779	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	3	119205779	119205779	A	C	SNP	POGLUT1	ENST00000295588	human	ensembl	74_37	+1	known	missense	c.738	p.K246N	1.000	pfam_LipoPS_modifying,smart_LipoPS_modifying	pfam_LipoPS_modifying,smart_LipoPS_modifying	-	no_errors	POGLUT1	HGNC	ENSG00000163389				153	0	0	88	18	16.9811
HGD	0	genome.wustl.edu	37	3	120352085	120352085	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	3	120352085	120352085	C	A	SNP	HGD	ENST00000283871	human	ensembl	74_37	-1	known	missense	c.1097	p.S366I	0.998	pfam_Homogentis_dOase,superfamily_RmlC_Cupin,tigrfam_Homogentis_dOase	pfam_Homogentis_dOase,superfamily_RmlC_Cupin,tigrfam_Homogentis_dOase	-	no_errors	HGD	HGNC	ENSG00000113924				155	0	0	108	16	12.9032
PLXNA1	0	genome.wustl.edu	37	3	126736735	126736735	+	Silent	SNP	G	G	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	3	126736735	126736735	G	A	SNP	PLXNA1	ENST00000393409	human	ensembl	74_37	+1	known	silent	c.3660	p.T1220	1.000	pfam_IPT,superfamily_Ig_E-set,smart_IPT	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA1	HGNC	ENSG00000114554				46	0	0	25	12	32.4324
TOPBP1	0	genome.wustl.edu	37	3	133379947	133379947	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	3	133379947	133379947	A	C	SNP	TOPBP1	ENST00000260810	human	ensembl	74_37	-1	known	missense	c.25	p.F9V	0.996	NULL	pfam_BRCT_dom,superfamily_BRCT_dom,superfamily_Secretoglobin,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	TOPBP1	HGNC	ENSG00000163781				26	0	0	11	10	47.619
FBLN2	0	genome.wustl.edu	37	3	13655628	13655628	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	3	13655628	13655628	C	T	SNP	FBLN2	ENST00000404922	human	ensembl	74_37	+1	known	missense	c.1693	p.R565C	0.999	NULL	pfam_EGF-like_Ca-bd_dom,pfam_Anaphylatoxin/fibulin,superfamily_Anaphylatoxin_comp_syst,smart_EG-like_dom,smart_Anaphylatoxin/fibulin,smart_EGF-like_Ca-bd_dom,pfscan_Anaphylatoxin/fibulin,pfscan_EG-like_dom	-	no_errors	FBLN2	HGNC	ENSG00000163520				59	0	0	36	10	21.7391
PCOLCE2	0	genome.wustl.edu	37	3	142567080	142567080	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	3	142567080	142567080	C	T	SNP	PCOLCE2	ENST00000295992	human	ensembl	74_37	-1	known	missense	c.427	p.A143T	1.000	superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_Netrin_module_non-TIMP,superfamily_CUB_dom,superfamily_TIMP-like_OB-fold,smart_CUB_dom,smart_Netrin_module_non-TIMP,pfscan_CUB_dom,pfscan_Netrin_domain	-	no_errors	PCOLCE2	HGNC	ENSG00000163710				80	0	0	54	8	12.9032
TBC1D5	0	genome.wustl.edu	37	3	17279755	17279755	+	Silent	SNP	A	A	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	3	17279755	17279755	A	G	SNP	TBC1D5	ENST00000253692	human	ensembl	74_37	-1	known	silent	c.1488	p.P496	0.024	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D5	HGNC	ENSG00000131374				51	0	0	34	7	17.0732
GNB4	0	genome.wustl.edu	37	3	179132727	179132727	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	3	179132727	179132727	A	T	SNP	GNB4	ENST00000232564	human	ensembl	74_37	-1	known	missense	c.376	p.L126I	0.998	pirsf_Guanine_nucleotide-bd_bsu,superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pirsf_Guanine_nucleotide-bd_bsu,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_Gprotein_B,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	GNB4	HGNC	ENSG00000114450				331	0	0	244	50	17.0068
IL1RAP	0	genome.wustl.edu	37	3	190366162	190366162	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	3	190366162	190366162	A	C	SNP	IL1RAP	ENST00000072516	human	ensembl	74_37	+1	known	missense	c.1381	p.S461R	1.000	pfam_TIR_dom,superfamily_TIR_dom,smart_TIR_dom,pfscan_TIR_dom	pfam_TIR_dom,superfamily_TIR_dom,smart_Ig_sub,smart_TIR_dom,pfscan_TIR_dom,pfscan_Ig-like_dom,prints_IL-1_rcpt_I/II-typ	-	no_errors	IL1RAP	HGNC	ENSG00000196083				264	0	0	212	42	16.5354
APOD	0	genome.wustl.edu	37	3	195300808	195300808	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	3	195300808	195300808	G	T	SNP	APOD	ENST00000343267	human	ensembl	74_37	-1	known	missense	c.158	p.P53Q	0.998	pfam_Lipocln_cytosolic_FA-bd_dom,pfam_Triabin_pallidipin/procalin,superfamily_Calycin-like,pirsf_Lipocalin_ApoD	pfam_Lipocln_cytosolic_FA-bd_dom,pfam_Triabin_pallidipin/procalin,superfamily_Calycin-like,pirsf_Lipocalin_ApoD,prints_ApolipopD,prints_Invtbrt_color,prints_Lipocalin,prints_Lipocalin_bac	-	no_errors	APOD	HGNC	ENSG00000189058				90	0	0	67	10	12.987
MUC4	0	genome.wustl.edu	37	3	195495955	195495955	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	3	195495955	195495955	G	A	SNP	MUC4	ENST00000470451	human	ensembl	74_37	-1	known	missense	c.13235	p.A4412V	0.010	NULL	NULL	-	no_errors	MUC4	HGNC	ENSG00000145113				29	0	0	13	17	56.6667
CYP8B1	0	genome.wustl.edu	37	3	42916035	42916035	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	3	42916035	42916035	T	G	SNP	CYP8B1	ENST00000316161	human	ensembl	74_37	-1	known	missense	c.1274	p.K425T	1.000	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I	-	no_errors	CYP8B1	HGNC	ENSG00000180432				153	0	0	88	29	24.7863
RBM5	0	genome.wustl.edu	37	3	50153411	50153411	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	3	50153411	50153411	G	A	SNP	RBM5	ENST00000347869	human	ensembl	74_37	+1	known	missense	c.2092	p.E698K	1.000	NULL	pfam_G_patch_dom,pfam_RRM_dom,pfam_Znf_RanBP2,smart_RRM_dom,smart_Znf_RanBP2,smart_G_patch_dom,pfscan_Znf_RanBP2,pfscan_Znf_C2H2,pfscan_G_patch_dom,pfscan_RRM_dom	-	no_errors	RBM5	HGNC	ENSG00000003756				78	0	0	44	11	20
WNT5A	0	genome.wustl.edu	37	3	55504415	55504415	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	3	55504415	55504415	T	C	SNP	WNT5A	ENST00000264634	human	ensembl	74_37	-1	known	missense	c.848	p.K283R	1.000	pfam_Wnt,smart_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt	-	no_errors	WNT5A	HGNC	ENSG00000114251				36	0	0	19	6	24
ARL13B	0	genome.wustl.edu	37	3	93699229	93699229	+	RNA	SNP	C	C	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	3	93699229	93699229	C	T	SNP	ARL13B	ENST00000486562	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	ARL13B	HGNC	ENSG00000169379				86	0	0	56	19	25.3333
OR5AC2	0	genome.wustl.edu	37	3	97806150	97806150	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	3	97806150	97806150	T	G	SNP	OR5AC2	ENST00000358642	human	ensembl	74_37	+1	known	missense	c.134	p.L45R	0.368	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5AC2	HGNC	ENSG00000196578				287	0	0	216	44	16.9231
OR5K2	0	genome.wustl.edu	37	3	98216669	98216669	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	3	98216669	98216669	A	C	SNP	OR5K2	ENST00000427338	human	ensembl	74_37	+1	known	missense	c.145	p.I49L	0.010	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5K2	HGNC	ENSG00000231861				328	0	0	271	51	15.8385
NDST3	0	genome.wustl.edu	37	4	119163259	119163259	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	4	119163259	119163259	A	C	SNP	NDST3	ENST00000296499	human	ensembl	74_37	+1	known	missense	c.2354	p.K785T	1.000	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	pfam_Heparan_SO4_deacetylase,pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	NDST3	HGNC	ENSG00000164100				170	0	0	106	22	17.1875
ADAD1	0	genome.wustl.edu	37	4	123332388	123332388	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	4	123332388	123332388	G	A	SNP	ADAD1	ENST00000296513	human	ensembl	74_37	+1	known	missense	c.860	p.R287K	1.000	pfam_A_deamin,smart_A_deamin,pfscan_A_deamin	pfam_A_deamin,pfam_dsRNA-bd_dom,smart_dsRNA-bd_dom,smart_A_deamin,pfscan_dsRNA-bd_dom,pfscan_A_deamin	-	no_errors	ADAD1	HGNC	ENSG00000164113				56	0	0	32	7	17.9487
FAT4	0	genome.wustl.edu	37	4	126389829	126389829	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	4	126389829	126389829	A	T	SNP	FAT4	ENST00000394329	human	ensembl	74_37	+1	known	missense	c.12062	p.D4021V	0.999	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159				86	0	0	53	15	22.0588
FAT4	0	genome.wustl.edu	37	4	126411383	126411383	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	4	126411383	126411383	T	A	SNP	FAT4	ENST00000394329	human	ensembl	74_37	+1	known	missense	c.13406	p.L4469H	0.992	NULL	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159				102	0	0	58	14	19.4444
DCHS2	0	genome.wustl.edu	37	4	155287504	155287504	+	Silent	SNP	C	C	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	4	155287504	155287504	C	T	SNP	DCHS2	ENST00000357232	human	ensembl	74_37	-1	known	silent	c.552	p.T184	0.005	superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_HTH_CenpB_DNA-bd_dom,superfamily_Cadherin-like,superfamily_Homeodomain-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	DCHS2	HGNC	ENSG00000197410				69	0	0	38	12	24
LRAT	0	genome.wustl.edu	37	4	155670290	155670290	+	RNA	SNP	T	T	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	4	155670290	155670290	T	G	SNP	LRAT	ENST00000502474	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.177	-	-	-	no_errors	LRAT	HGNC	ENSG00000121207				212	0	0	122	26	17.5676
GRIA2	0	genome.wustl.edu	37	4	158254090	158254090	+	Silent	SNP	A	A	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	4	158254090	158254090	A	G	SNP	GRIA2	ENST00000264426	human	ensembl	74_37	+1	known	silent	c.1002	p.P334	0.977	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_Iontro_glu_rcpt,pfam_ANF_lig-bd_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIA2	HGNC	ENSG00000120251				73	0	0	57	9	13.6364
TLR6	0	genome.wustl.edu	37	4	38830380	38830380	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	4	38830380	38830380	T	C	SNP	TLR6	ENST00000381950	human	ensembl	74_37	-1	known	missense	c.715	p.I239V	0.000	pirsf_Toll-like_receptor	pirsf_Toll-like_receptor,pfam_TIR_dom,pfam_Leu-rich_rpt,pfam_Cys-rich_flank_reg_C,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR6	HGNC	ENSG00000174130				65	0	0	46	12	20.6897
N4BP2	0	genome.wustl.edu	37	4	40115104	40115104	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	4	40115104	40115104	A	C	SNP	N4BP2	ENST00000261435	human	ensembl	74_37	+1	known	missense	c.1640	p.K547T	1.000	superfamily_P-loop_NTPase	pfam_DUF1771,pfam_Smr/MutS2_C,superfamily_P-loop_NTPase,superfamily_UBA-like,smart_Smr/MutS2_C,pfscan_CUE,pfscan_Smr/MutS2_C	-	no_errors	N4BP2	HGNC	ENSG00000078177				216	0	0	172	38	18.0952
ATP8A1	0	genome.wustl.edu	37	4	42583692	42583692	+	Silent	SNP	T	T	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	4	42583692	42583692	T	A	SNP	ATP8A1	ENST00000381668	human	ensembl	74_37	-1	known	silent	c.780	p.T260	0.032	pfam_ATPase_P-typ_transduc_dom_A,tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP8A1	HGNC	ENSG00000124406				144	0	0	115	20	14.8148
CYTL1	0	genome.wustl.edu	37	4	5018891	5018891	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	4	5018891	5018891	A	T	SNP	CYTL1	ENST00000307746	human	ensembl	74_37	-1	known	missense	c.169	p.Y57N	0.508	NULL	NULL	-	no_errors	CYTL1	HGNC	ENSG00000170891				77	0	0	55	5	8.33333
UGT2A1	0	genome.wustl.edu	37	4	70513235	70513235	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	4	70513235	70513235	A	C	SNP	UGT2A1	ENST00000503640	human	ensembl	74_37	-1	known	missense	c.128	p.L43R	0.111	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT2A1	HGNC	ENSG00000173610				55	0	0	44	12	21.4286
MEPE	0	genome.wustl.edu	37	4	88766376	88766376	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	4	88766376	88766376	A	C	SNP	MEPE	ENST00000361056	human	ensembl	74_37	+1	known	missense	c.356	p.K119T	0.000	pfam_Osteoregulin	pfam_Osteoregulin	-	no_errors	MEPE	HGNC	ENSG00000152595				59	0	0	30	10	25
FAM13A	0	genome.wustl.edu	37	4	89950685	89950685	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	4	89950685	89950685	A	C	SNP	FAM13A	ENST00000264344	human	ensembl	74_37	-1	known	missense	c.143	p.L48R	0.970	superfamily_Rho_GTPase_activation_prot,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	FAM13A	HGNC	ENSG00000138640				205	0	0	140	38	21.3483
STPG2	0	genome.wustl.edu	37	4	98902359	98902359	+	Silent	SNP	A	A	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	4	98902359	98902359	A	T	SNP	STPG2	ENST00000295268	human	ensembl	74_37	-1	known	silent	c.723	p.G241	0.998	NULL	NULL	-	no_errors	STPG2	HGNC	ENSG00000163116				186	0	0	116	28	19.4444
EIF4E	0	genome.wustl.edu	37	4	99823081	99823081	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	4	99823081	99823081	G	C	SNP	EIF4E	ENST00000280892	human	ensembl	74_37	-1	known	missense	c.131	p.S44C	1.000	superfamily_TIF_eIF4e-like_dom	pfam_TIF_eIF_4E,superfamily_TIF_eIF4e-like_dom	-	no_errors	EIF4E	HGNC	ENSG00000151247				258	0	0	162	53	24.6512
SLCO4C1	0	genome.wustl.edu	37	5	101631706	101631706	+	Silent	SNP	A	A	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	5	101631706	101631706	A	C	SNP	SLCO4C1	ENST00000310954	human	ensembl	74_37	-1	known	silent	c.261	p.S87	0.953	superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO4C1	HGNC	ENSG00000173930				76	0	0	43	13	23.2143
CTNND2	0	genome.wustl.edu	37	5	11364952	11364952	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	5	11364952	11364952	A	C	SNP	CTNND2	ENST00000304623	human	ensembl	74_37	-1	known	missense	c.1228	p.L410V	1.000	NULL	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	CTNND2	HGNC	ENSG00000169862				125	0	0	99	18	15.3846
KCNN2	0	genome.wustl.edu	37	5	113822854	113822854	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	5	113822854	113822854	A	C	SNP	KCNN2	ENST00000264773	human	ensembl	74_37	+1	known	missense	c.1362	p.K454N	1.000	pfam_CaM-bd_dom,superfamily_CaM-bd_dom	pfam_K_chnl_Ca-activ_SK,pfam_CaM-bd_dom,pfam_2pore_dom_K_chnl_dom,superfamily_CaM-bd_dom,prints_K_chnl_Ca-activ_SK	-	no_errors	KCNN2	HGNC	ENSG00000080709				83	0	0	44	9	16.9811
ACSL6	0	genome.wustl.edu	37	5	131307262	131307262	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	5	131307262	131307262	C	T	SNP	ACSL6	ENST00000296869	human	ensembl	74_37	-1	known	missense	c.1415	p.R472Q	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSL6	HGNC	ENSG00000164398				32	0	0	18	7	28
DNAH5	0	genome.wustl.edu	37	5	13729648	13729648	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	5	13729648	13729648	T	G	SNP	DNAH5	ENST00000265104	human	ensembl	74_37	-1	known	missense	c.11783	p.K3928T	1.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139				62	0	0	47	7	12.963
DNAH5	0	genome.wustl.edu	37	5	13751364	13751364	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	5	13751364	13751364	T	G	SNP	DNAH5	ENST00000265104	human	ensembl	74_37	-1	known	missense	c.11034	p.K3678N	0.999	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139				59	0	0	33	13	28.2609
PCDHA6	0	genome.wustl.edu	37	5	140209285	140209285	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	5	140209285	140209285	G	A	SNP	PCDHA6	ENST00000529310	human	ensembl	74_37	+1	known	missense	c.1609	p.A537T	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA6	HGNC	ENSG00000081842				182	0	0	121	34	21.9355
PCDHA8	0	genome.wustl.edu	37	5	140222313	140222313	+	Silent	SNP	G	G	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	5	140222313	140222313	G	A	SNP	PCDHA8	ENST00000531613	human	ensembl	74_37	+1	known	silent	c.1407	p.P469	0.064	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA8	HGNC	ENSG00000204962				107	0	0	50	20	28.5714
PCDHB12	0	genome.wustl.edu	37	5	140589755	140589755	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	5	140589755	140589755	T	A	SNP	PCDHB12	ENST00000239450	human	ensembl	74_37	+1	known	missense	c.1276	p.L426M	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB12	HGNC	ENSG00000120328				113	0	0	64	15	18.9873
PCDHGB2	0	genome.wustl.edu	37	5	140741903	140741903	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	5	140741903	140741903	A	C	SNP	PCDHGB2	ENST00000522605	human	ensembl	74_37	+1	known	missense	c.2201	p.K734T	0.001	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB2	HGNC	ENSG00000253910				178	0	0	125	28	18.3007
KCTD16	0	genome.wustl.edu	37	5	143853664	143853664	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	5	143853664	143853664	A	C	SNP	KCTD16	ENST00000507359	human	ensembl	74_37	+1	known	missense	c.1274	p.K425T	1.000	NULL	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	-	no_errors	KCTD16	HGNC	ENSG00000183775				111	0	0	73	10	12.0482
SH3TC2	0	genome.wustl.edu	37	5	148424152	148424152	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	5	148424152	148424152	A	G	SNP	SH3TC2	ENST00000515425	human	ensembl	74_37	-1	known	missense	c.329	p.L110P	1.000	NULL	pfam_SH3_domain,pfam_TPR_1,superfamily_SH3_domain,smart_SH3_domain,smart_TPR_repeat,pfscan_SH3_domain	-	no_errors	SH3TC2	HGNC	ENSG00000169247				89	0	0	46	10	17.8571
GRIA1	0	genome.wustl.edu	37	5	153149735	153149735	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	5	153149735	153149735	A	C	SNP	GRIA1	ENST00000448073	human	ensembl	74_37	+1	known	missense	c.2060	p.K687T	1.000	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIA1	HGNC	ENSG00000155511				148	0	0	90	22	19.6429
ITK	0	genome.wustl.edu	37	5	156649893	156649893	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	5	156649893	156649893	A	C	SNP	ITK	ENST00000422843	human	ensembl	74_37	+1	known	missense	c.516	p.E172D	0.999	pfscan_SH3_domain	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_Znf_Btk_motif,pfam_SH3_domain,pfam_Pleckstrin_homology,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_Znf_Btk_motif,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_Znf_Btk_motif,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	ITK	HGNC	ENSG00000113263				90	0	0	56	9	13.8462
SLIT3	0	genome.wustl.edu	37	5	168671766	168671766	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	5	168671766	168671766	T	C	SNP	SLIT3	ENST00000519560	human	ensembl	74_37	-1	known	missense	c.284	p.N95S	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_EG-like_dom,pfam_Leu-rich_rpt,pfam_Laminin_G,pfam_LRR-contain_N,pfam_Cys-rich_flank_reg_C,superfamily_ConA-like_lec_gl_sf,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Leu-rich_rpt_RNase_inh_sub-typ,smart_Cys-rich_flank_reg_C,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Laminin_G,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	SLIT3	HGNC	ENSG00000184347				66	0	0	40	12	23.0769
BRIX1	0	genome.wustl.edu	37	5	34915867	34915867	+	Silent	SNP	G	G	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	5	34915867	34915867	G	A	SNP	BRIX1	ENST00000336767	human	ensembl	74_37	+1	known	silent	c.24	p.R8	1.000	NULL	pfam_Brix,superfamily_Anticodon-bd,smart_Brix,pfscan_Brix	-	no_errors	BRIX1	HGNC	ENSG00000113460				21	0	0	7	5	41.6667
SPEF2	0	genome.wustl.edu	37	5	35727819	35727819	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	5	35727819	35727819	A	G	SNP	SPEF2	ENST00000356031	human	ensembl	74_37	+1	known	missense	c.2957	p.K986R	0.975	NULL	pfam_DUF1042,pfam_Adenylate_kin,pfam_HATC_dom_C,superfamily_P-loop_NTPase,superfamily_CH-domain,pfscan_CH-domain	-	no_errors	SPEF2	HGNC	ENSG00000152582				95	0	0	55	14	20.2899
SPEF2	0	genome.wustl.edu	37	5	35814620	35814620	+	Silent	SNP	A	A	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	5	35814620	35814620	A	C	SNP	SPEF2	ENST00000356031	human	ensembl	74_37	+1	known	silent	c.5434	p.R1812	0.677	NULL	pfam_DUF1042,pfam_Adenylate_kin,pfam_HATC_dom_C,superfamily_P-loop_NTPase,superfamily_CH-domain,pfscan_CH-domain	-	no_errors	SPEF2	HGNC	ENSG00000152582				78	0	0	51	10	16.3934
HSPB3	0	genome.wustl.edu	37	5	53752045	53752045	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	5	53752045	53752045	A	C	SNP	HSPB3	ENST00000302005	human	ensembl	74_37	+1	known	missense	c.426	p.E142D	0.911	pfam_a-crystallin/Hsp20_dom,superfamily_HSP20-like_chaperone,pfscan_a-crystallin/Hsp20_dom,prints_Alpha-crystallin/HSP	pfam_a-crystallin/Hsp20_dom,superfamily_HSP20-like_chaperone,pfscan_a-crystallin/Hsp20_dom,prints_Alpha-crystallin/HSP	-	no_errors	HSPB3	HGNC	ENSG00000169271				138	0	0	59	13	18.0556
RASGRF2	0	genome.wustl.edu	37	5	80390141	80390141	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	5	80390141	80390141	C	A	SNP	RASGRF2	ENST00000265080	human	ensembl	74_37	+1	known	missense	c.1578	p.D526E	0.972	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_Ras_GEF_dom,superfamily_DH-domain,smart_Pleckstrin_homology,smart_DH-domain,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_DH-domain,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGRF2	HGNC	ENSG00000113319				47	0	0	28	3	9.67742
REV3L	0	genome.wustl.edu	37	6	111685110	111685110	+	Silent	SNP	A	A	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	6	111685110	111685110	A	C	SNP	REV3L	ENST00000358835	human	ensembl	74_37	-1	known	silent	c.6825	p.T2275	0.984	pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B	-	no_errors	REV3L	HGNC	ENSG00000009413				60	0	0	61	10	14.0845
GPRC6A	0	genome.wustl.edu	37	6	117130660	117130660	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	6	117130660	117130660	T	G	SNP	GPRC6A	ENST00000310357	human	ensembl	74_37	-1	known	missense	c.315	p.E105D	0.983	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_GPCR_3_C,pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_vmron_rcpt_2	-	no_errors	GPRC6A	HGNC	ENSG00000173612				71	0	0	59	12	16.9014
SLC35F1	0	genome.wustl.edu	37	6	118635300	118635300	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	6	118635300	118635300	G	A	SNP	SLC35F1	ENST00000360388	human	ensembl	74_37	+1	known	missense	c.1112	p.R371H	1.000	pfam_SLC35_F1/F2/F6	pfam_SLC35_F1/F2/F6,pfam_DMT	-	no_errors	SLC35F1	HGNC	ENSG00000196376				146	1	0.680272	133	16	10.7383
SOGA3	0	genome.wustl.edu	37	6	127834069	127834069	+	Silent	SNP	T	T	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	6	127834069	127834069	T	C	SNP	SOGA3	ENST00000368268	human	ensembl	74_37	-1	known	silent	c.1452	p.Q484	0.925	NULL	pfam_SOGA	-	no_errors	SOGA3	HGNC	ENSG00000214338				40	0	0	38	5	11.6279
UTRN	0	genome.wustl.edu	37	6	144768817	144768817	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	6	144768817	144768817	T	G	SNP	UTRN	ENST00000367545	human	ensembl	74_37	+1	known	missense	c.1802	p.L601R	0.977	smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_dom,superfamily_CH-domain,superfamily_WW_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_dom,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_dom,pfscan_Znf_ZZ	-	no_errors	UTRN	HGNC	ENSG00000152818				93	0	0	87	13	13
UTRN	0	genome.wustl.edu	37	6	144801062	144801062	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	6	144801062	144801062	C	T	SNP	UTRN	ENST00000367545	human	ensembl	74_37	+1	known	missense	c.3451	p.R1151W	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_dom,superfamily_CH-domain,superfamily_WW_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_dom,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_dom,pfscan_Znf_ZZ	-	no_errors	UTRN	HGNC	ENSG00000152818				124	0	0	60	31	34.0659
UTRN	0	genome.wustl.edu	37	6	144832238	144832238	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	6	144832238	144832238	A	C	SNP	UTRN	ENST00000367545	human	ensembl	74_37	+1	known	missense	c.4923	p.E1641D	0.994	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_dom,superfamily_CH-domain,superfamily_WW_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_dom,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_dom,pfscan_Znf_ZZ	-	no_errors	UTRN	HGNC	ENSG00000152818				120	0	0	81	21	20.5882
FBXO30	0	genome.wustl.edu	37	6	146125620	146125620	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	6	146125620	146125620	T	A	SNP	FBXO30	ENST00000237281	human	ensembl	74_37	-1	known	missense	c.1922	p.K641M	1.000	pfam_F-box_dom,superfamily_F-box_dom,pfscan_F-box_dom	pfam_F-box_dom,superfamily_F-box_dom,superfamily_TRAF-like,pfscan_F-box_dom,pfscan_Znf_TRAF	-	no_errors	FBXO30	HGNC	ENSG00000118496				122	0	0	97	40	29.1971
SYNE1	0	genome.wustl.edu	37	6	152590341	152590341	+	Silent	SNP	T	T	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	6	152590341	152590341	T	C	SNP	SYNE1	ENST00000265368	human	ensembl	74_37	-1	known	silent	c.18654	p.Q6218	0.997	superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018				114	0	0	83	37	30.8333
RGS17	0	genome.wustl.edu	37	6	153332885	153332885	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	6	153332885	153332885	A	T	SNP	RGS17	ENST00000206262	human	ensembl	74_37	-1	known	missense	c.457	p.S153T	1.000	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS17	HGNC	ENSG00000091844				74	0	0	43	9	17.3077
T	0	genome.wustl.edu	37	6	166571913	166571913	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	6	166571913	166571913	G	T	SNP	T	ENST00000296946	human	ensembl	74_37	-1	known	missense	c.1198	p.L400M	0.030	NULL	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,prints_TF_Brachyury,prints_TF_T-box,pfscan_TF_T-box	-	no_errors	T	HGNC	ENSG00000164458				125	0	0	80	20	20
CCHCR1	0	genome.wustl.edu	37	6	31116191	31116191	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	6	31116191	31116191	G	A	SNP	CCHCR1	ENST00000396268	human	ensembl	74_37	-1	known	missense	c.1571	p.A524V	0.004	pfam_HCR	pfam_HCR	-	no_errors	CCHCR1	HGNC	ENSG00000204536				133	0	0	94	5	5.05051
PBX2	0	genome.wustl.edu	37	6	32156083	32156083	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	6	32156083	32156083	A	C	SNP	PBX2	ENST00000375050	human	ensembl	74_37	-1	known	missense	c.494	p.L165R	1.000	pfam_PBX	pfam_PBX,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	PBX2	HGNC	ENSG00000204304				129	0	0	75	23	23.4694
USP49	0	genome.wustl.edu	37	6	41766457	41766457	+	Silent	SNP	C	C	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	6	41766457	41766457	C	T	SNP	USP49	ENST00000297229	human	ensembl	74_37	-1	known	silent	c.1881	p.A627	1.000	pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfam_Znf_UBP,smart_Znf_UBP,pfscan_Znf_UBP,pfscan_Peptidase_C19/C67	-	no_errors	USP49	HGNC	ENSG00000164663				177	0	0	130	31	19.2547
PRPH2	0	genome.wustl.edu	37	6	42690053	42690053	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	6	42690053	42690053	T	G	SNP	PRPH2	ENST00000230381	human	ensembl	74_37	-1	known	missense	c.20	p.K7T	0.717	NULL	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Peripherin/rom-1	-	no_errors	PRPH2	HGNC	ENSG00000112619				83	0	0	58	15	20.5479
RUNX2	0	genome.wustl.edu	37	6	45514961	45514961	+	Silent	SNP	C	C	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	6	45514961	45514961	C	T	SNP	RUNX2	ENST00000352853	human	ensembl	74_37	+1	known	silent	c.1689	p.D563	1.000	pfam_RunxI_C_dom,prints_AML1_Runt	pfam_Runt_dom,pfam_RunxI_C_dom,superfamily_p53-like_TF_DNA-bd,pfscan_Runt_dom,prints_AML1_Runt	-	no_errors	RUNX2	HGNC	ENSG00000124813				144	1	0.689655	122	31	20.2614
PKHD1	0	genome.wustl.edu	37	6	51612651	51612651	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	6	51612651	51612651	A	G	SNP	PKHD1	ENST00000371117	human	ensembl	74_37	-1	known	missense	c.9763	p.W3255R	0.913	NULL	pfam_IPT,pfam_G8_domain,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,smart_IPT,smart_PbH1	-	no_errors	PKHD1	HGNC	ENSG00000170927				130	0	0	115	19	14.1791
HMGCLL1	0	genome.wustl.edu	37	6	55406891	55406891	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	6	55406891	55406891	T	G	SNP	HMGCLL1	ENST00000398661	human	ensembl	74_37	-1	known	missense	c.246	p.E82D	1.000	pfscan_PYR_CT	pfam_PYR_CT,pfscan_PYR_CT	-	no_errors	HMGCLL1	HGNC	ENSG00000146151				62	0	0	47	9	16.0714
BMP5	0	genome.wustl.edu	37	6	55659183	55659183	+	Silent	SNP	A	A	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	6	55659183	55659183	A	C	SNP	BMP5	ENST00000370830	human	ensembl	74_37	-1	known	silent	c.726	p.A242	0.616	pfam_TGF-b_N	pfam_TGF-b_N,pfam_TGF-b_C,smart_TGF-b_C	-	no_errors	BMP5	HGNC	ENSG00000112175				131	0	0	132	15	10.2041
ZNF451	0	genome.wustl.edu	37	6	57013172	57013172	+	Silent	SNP	G	G	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	6	57013172	57013172	G	A	SNP	ZNF451	ENST00000370706	human	ensembl	74_37	+1	known	silent	c.2289	p.Q763	1.000	smart_Znf_C2H2-like	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF451	HGNC	ENSG00000112200				26	0	0	20	3	13.0435
COL12A1	0	genome.wustl.edu	37	6	75844528	75844528	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	6	75844528	75844528	A	C	SNP	COL12A1	ENST00000322507	human	ensembl	74_37	-1	known	missense	c.5438	p.L1813R	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_VWF_A,pfam_Collagen,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL12A1	HGNC	ENSG00000111799				110	1	0.900901	84	18	17.6471
RELN	0	genome.wustl.edu	37	7	103294587	103294587	+	Silent	SNP	T	T	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	7	103294587	103294587	T	G	SNP	RELN	ENST00000424685	human	ensembl	74_37	-1	known	silent	c.1507	p.R503	1.000	NULL	pfam_EGF_extracell,pfam_Reeler_dom,pfam_BNR_rpt,superfamily_Sialidases,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Reeler_dom	-	no_errors	RELN	HGNC	ENSG00000189056				78	0	0	70	14	16.6667
PRKAR2B	0	genome.wustl.edu	37	7	106793689	106793689	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	7	106793689	106793689	T	C	SNP	PRKAR2B	ENST00000265717	human	ensembl	74_37	+1	known	missense	c.911	p.I304T	1.000	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pirsf_cAMP_dep_PK_reg_su,pfscan_cNMP-bd_dom	pfam_cNMP-bd_dom,pfam_cAMP_dep_PK_reg_su_I/II_a/b,superfamily_cNMP-bd-like,superfamily_cAMP_dep_PK_reg_su_I/II_a/b,smart_cAMP_dep_PK_reg_su_I/II_a/b,smart_cNMP-bd_dom,pirsf_cAMP_dep_PK_reg_su,pfscan_cNMP-bd_dom,prints_cAMP/cGMP_kin	-	no_errors	PRKAR2B	HGNC	ENSG00000005249				118	0	0	95	16	14.4144
LAMB4	0	genome.wustl.edu	37	7	107732089	107732089	+	Silent	SNP	G	G	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	7	107732089	107732089	G	T	SNP	LAMB4	ENST00000205386	human	ensembl	74_37	-1	known	silent	c.1683	p.L561	0.002	smart_EGF_laminin,pfscan_Laminin_IV	pfam_EGF_laminin,pfam_Laminin_N,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,pfscan_Laminin_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB4	HGNC	ENSG00000091128				100	0	0	76	20	20.8333
TAS2R16	0	genome.wustl.edu	37	7	122635486	122635486	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	7	122635486	122635486	A	C	SNP	TAS2R16	ENST00000249284	human	ensembl	74_37	-1	known	missense	c.203	p.F68C	0.022	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R16	HGNC	ENSG00000128519				76	0	0	61	19	23.75
OR2A12	0	genome.wustl.edu	37	7	143792445	143792445	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	7	143792445	143792445	C	A	SNP	OR2A12	ENST00000408949	human	ensembl	74_37	+1	known	missense	c.245	p.A82E	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2A12	HGNC	ENSG00000221858				93	0	0	39	42	51.8519
CNTNAP2	0	genome.wustl.edu	37	7	147092834	147092834	+	Silent	SNP	C	C	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	7	147092834	147092834	C	T	SNP	CNTNAP2	ENST00000361727	human	ensembl	74_37	+1	known	silent	c.1632	p.F544	0.997	superfamily_ConA-like_lec_gl_sf,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,pfam_EG-like_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EG-like_dom,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP2	HGNC	ENSG00000174469				142	0	0	98	23	19.0083
ABCB5	0	genome.wustl.edu	37	7	20698710	20698710	+	Nonstop_Mutation	SNP	T	T	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	7	20698710	20698710	T	C	SNP	ABCB5	ENST00000443026	human	ensembl	74_37	+1	known	nonstop	c.394	p.*132R	0.004	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase	-	no_errors	ABCB5	HGNC	ENSG00000004846				239	0	0	215	24	10.0418
DNAH11	0	genome.wustl.edu	37	7	21603831	21603831	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	7	21603831	21603831	T	G	SNP	DNAH11	ENST00000328843	human	ensembl	74_37	+1	known	missense	c.1010	p.L337R	0.981	pfam_Dynein_heavy_dom-1	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH11	HGNC	ENSG00000105877				77	0	0	87	15	14.7059
DNAH11	0	genome.wustl.edu	37	7	21630894	21630894	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	7	21630894	21630894	T	G	SNP	DNAH11	ENST00000328843	human	ensembl	74_37	+1	known	missense	c.2366	p.L789R	1.000	pfam_Dynein_heavy_dom-1	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH11	HGNC	ENSG00000105877				98	0	0	94	10	9.61538
HOXA11	0	genome.wustl.edu	37	7	27224672	27224672	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	7	27224672	27224672	G	A	SNP	HOXA11	ENST00000006015	human	ensembl	74_37	-1	known	missense	c.92	p.P31L	1.000	pfam_DUF3528	pfam_DUF3528,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	HOXA11	HGNC	ENSG00000005073				144	0	0	151	19	11.1765
HOXA11	0	genome.wustl.edu	37	7	27224674	27224674	+	Silent	SNP	G	G	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	7	27224674	27224674	G	A	SNP	HOXA11	ENST00000006015	human	ensembl	74_37	-1	known	silent	c.90	p.L30	1.000	pfam_DUF3528	pfam_DUF3528,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	HOXA11	HGNC	ENSG00000005073				139	0	0	150	18	10.7143
AUTS2	0	genome.wustl.edu	37	7	69364348	69364348	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	7	69364348	69364348	T	G	SNP	AUTS2	ENST00000342771	human	ensembl	74_37	+1	known	missense	c.386	p.L129R	1.000	NULL	prints_AUTS2	-	no_errors	AUTS2	HGNC	ENSG00000158321				116	0	0	107	20	15.748
WBSCR17	0	genome.wustl.edu	37	7	70886007	70886007	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	7	70886007	70886007	A	G	SNP	WBSCR17	ENST00000333538	human	ensembl	74_37	+1	known	missense	c.878	p.H293R	1.000	pfam_Glyco_trans_2	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	WBSCR17	HGNC	ENSG00000185274				142	0	0	166	14	7.77778
WBSCR17	0	genome.wustl.edu	37	7	70886090	70886090	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	7	70886090	70886090	A	G	SNP	WBSCR17	ENST00000333538	human	ensembl	74_37	+1	known	missense	c.961	p.R321G	1.000	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	WBSCR17	HGNC	ENSG00000185274				59	0	0	49	7	12.5
GTF2IRD2P1	0	genome.wustl.edu	37	7	72664015	72664015	+	RNA	SNP	C	C	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	7	72664015	72664015	C	G	SNP	GTF2IRD2P1	ENST00000425256	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.912	-	-	-	no_errors	GTF2IRD2P1	HGNC	ENSG00000214544				29	0	0	31	3	8.82353
PCLO	0	genome.wustl.edu	37	7	82387919	82387919	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	7	82387919	82387919	A	G	SNP	PCLO	ENST00000333891	human	ensembl	74_37	-1	known	missense	c.15401	p.L5134P	1.000	superfamily_C2_dom	pfam_Znf_piccolo,pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472				308	0	0	772	47	5.73871
PCLO	0	genome.wustl.edu	37	7	82545548	82545548	+	Silent	SNP	T	T	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	7	82545548	82545548	T	C	SNP	PCLO	ENST00000333891	human	ensembl	74_37	-1	known	silent	c.11754	p.Q3918	1.000	NULL	pfam_Znf_piccolo,pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472				461	0	0	1108	76	6.41892
PCLO	0	genome.wustl.edu	37	7	82545671	82545671	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	7	82545671	82545671	T	G	SNP	PCLO	ENST00000333891	human	ensembl	74_37	-1	known	missense	c.11631	p.Q3877H	0.880	NULL	pfam_Znf_piccolo,pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472				551	2	0.361664	1305	76	5.50326
C7orf62	0	genome.wustl.edu	37	7	88424064	88424064	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	7	88424064	88424064	C	T	SNP	C7orf62	ENST00000297203	human	ensembl	74_37	-1	known	missense	c.193	p.V65I	0.000	NULL	NULL	-	no_errors	C7orf62	HGNC	ENSG00000164645				126	0	0	240	24	9.09091
ZSCAN25	0	genome.wustl.edu	37	7	99217362	99217362	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	7	99217362	99217362	T	G	SNP	ZSCAN25	ENST00000334715	human	ensembl	74_37	+1	known	missense	c.133	p.F45V	1.000	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,pfscan_Tscrpt_reg_SCAN	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN25	HGNC	ENSG00000197037				197	0	0	166	29	14.8718
STAG3	0	genome.wustl.edu	37	7	99796118	99796118	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	7	99796118	99796118	C	T	SNP	STAG3	ENST00000317296	human	ensembl	74_37	+1	known	missense	c.1265	p.T422M	0.995	superfamily_ARM-type_fold	pfam_STAG,superfamily_ARM-type_fold	-	no_errors	STAG3	HGNC	ENSG00000066923				150	0	0	121	21	14.7887
RIMS2	0	genome.wustl.edu	37	8	104898096	104898096	+	Silent	SNP	T	T	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	8	104898096	104898096	T	G	SNP	RIMS2	ENST00000406091	human	ensembl	74_37	+1	known	silent	c.1269	p.S423	0.998	NULL	pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_Znf_FYVE_PHD,superfamily_PDZ,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ,pfscan_Znf_FYVE-typ,pfscan_Znf_FYVE-rel	-	no_errors	RIMS2	HGNC	ENSG00000176406				85	0	0	57	16	21.9178
ZFPM2	0	genome.wustl.edu	37	8	106813816	106813816	+	Silent	SNP	T	T	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	8	106813816	106813816	T	G	SNP	ZFPM2	ENST00000407775	human	ensembl	74_37	+1	known	silent	c.1506	p.S502	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFPM2	HGNC	ENSG00000169946				232	0	0	194	37	16.0173
SNTB1	0	genome.wustl.edu	37	8	121823876	121823876	+	Silent	SNP	T	T	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	8	121823876	121823876	T	G	SNP	SNTB1	ENST00000395601	human	ensembl	74_37	-1	known	silent	c.208	p.R70	0.942	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_PDZ,pfam_Pleckstrin_homology,superfamily_PDZ,smart_Pleckstrin_homology,smart_PDZ,pfscan_PDZ,pfscan_Pleckstrin_homology	-	no_errors	SNTB1	HGNC	ENSG00000172164				33	0	0	22	7	24.1379
DLC1	0	genome.wustl.edu	37	8	12946131	12946131	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	8	12946131	12946131	A	G	SNP	DLC1	ENST00000276297	human	ensembl	74_37	-1	known	missense	c.4157	p.L1386P	0.977	pfam_START_lipid-bd_dom,smart_START_lipid-bd_dom,pfscan_START_lipid-bd_dom	pfam_START_lipid-bd_dom,pfam_RhoGAP_dom,pfam_SAM_2,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,smart_START_lipid-bd_dom,pfscan_START_lipid-bd_dom,pfscan_RhoGAP_dom	-	no_errors	DLC1	HGNC	ENSG00000164741				181	0	0	125	1738	93.2904
TG	0	genome.wustl.edu	37	8	133953600	133953600	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	8	133953600	133953600	A	C	SNP	TG	ENST00000220616	human	ensembl	74_37	+1	known	missense	c.5046	p.Q1682H	0.588	pirsf_Thyroglobulin	pfam_Thyroglobulin_1,pfam_CarbesteraseB,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,pirsf_Thyroglobulin,pfscan_Thyroglobulin_1	-	no_errors	TG	HGNC	ENSG00000042832				172	0	0	158	25	13.6612
PLEC	0	genome.wustl.edu	37	8	144991805	144991805	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	8	144991805	144991805	G	T	SNP	PLEC	ENST00000322810	human	ensembl	74_37	-1	known	missense	c.12595	p.P4199T	1.000	pfam_Plectin_repeat,smart_Plectin_repeat	pfam_Plectin_repeat,pfam_CH-domain,pfam_S10_plectin_N,superfamily_CH-domain,superfamily_Chorismate_mutase_type_II,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,pfscan_CH-domain	-	no_errors	PLEC	HGNC	ENSG00000178209				73	0	0	55	9	14.0625
PLEC	0	genome.wustl.edu	37	8	144997653	144997653	+	Silent	SNP	C	C	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	8	144997653	144997653	C	T	SNP	PLEC	ENST00000322810	human	ensembl	74_37	-1	known	silent	c.6855	p.R2285	0.597	NULL	pfam_Plectin_repeat,pfam_CH-domain,pfam_S10_plectin_N,superfamily_CH-domain,superfamily_Chorismate_mutase_type_II,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,pfscan_CH-domain	-	no_errors	PLEC	HGNC	ENSG00000178209				28	0	0	19	4	17.3913
EXOSC4	0	genome.wustl.edu	37	8	145135310	145135310	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	8	145135310	145135310	G	C	SNP	EXOSC4	ENST00000316052	human	ensembl	74_37	+1	known	missense	c.544	p.G182R	0.999	pfam_ExoRNase_PH_dom2,superfamily_ExoRNase_PH_dom2	pfam_ExoRNase_PH_dom1,pfam_ExoRNase_PH_dom2,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_ExoRNase_PH_dom2	-	no_errors	EXOSC4	HGNC	ENSG00000178896				86	0	0	71	5	6.57895
LPL	0	genome.wustl.edu	37	8	19813350	19813350	+	Splice_Site	SNP	A	A	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	8	19813350	19813350	A	G	SNP	LPL	ENST00000311322	human	ensembl	74_37	+1	known	splice_site	c.776-2	e6-2	0.913	-	-	-	no_errors	LPL	HGNC	ENSG00000175445				154	0	0	127	36	22.0859
GFRA2	0	genome.wustl.edu	37	8	21562635	21562635	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	8	21562635	21562635	A	C	SNP	GFRA2	ENST00000517328	human	ensembl	74_37	-1	known	missense	c.907	p.F303V	0.996	pfam_GDNF/GAS1,smart_GDNF/GAS1,pirsf_Glial_neurotroph_fac_rcpt_a1/2,prints_GDNF_rcpt	pfam_GDNF/GAS1,smart_GDNF/GAS1,pirsf_Glial_neurotroph_fac_rcpt_a1/2,prints_GDNF_rcpt,prints_GDNF_rcpt_a2	-	no_errors	GFRA2	HGNC	ENSG00000168546				20	0	0	16	5	23.8095
FZD3	0	genome.wustl.edu	37	8	28385541	28385541	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	8	28385541	28385541	G	A	SNP	FZD3	ENST00000240093	human	ensembl	74_37	+1	known	missense	c.1264	p.G422S	1.000	pfam_Frizzled,pfscan_GPCR_2-like,prints_Frizzled	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	FZD3	HGNC	ENSG00000104290				176	0	0	133	31	18.9024
FZD3	0	genome.wustl.edu	37	8	28385645	28385645	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	8	28385645	28385645	A	C	SNP	FZD3	ENST00000240093	human	ensembl	74_37	+1	known	missense	c.1368	p.E456D	1.000	pfam_Frizzled,pfscan_GPCR_2-like	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	FZD3	HGNC	ENSG00000104290				97	0	0	74	21	22.1053
GPR124	0	genome.wustl.edu	37	8	37697060	37697060	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	8	37697060	37697060	T	G	SNP	GPR124	ENST00000412232	human	ensembl	74_37	+1	known	missense	c.2431	p.L811V	1.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_GPCR_2_extracellular_dom,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,pfscan_GPS_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,pfscan_Ig-like_dom	-	no_errors	GPR124	HGNC	ENSG00000020181				65	0	0	58	12	17.1429
PXDNL	0	genome.wustl.edu	37	8	52321900	52321900	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	8	52321900	52321900	G	A	SNP	PXDNL	ENST00000356297	human	ensembl	74_37	-1	known	missense	c.2284	p.R762C	0.188	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,prints_Haem_peroxidase_animal_subgr,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like_dom	-	no_errors	PXDNL	HGNC	ENSG00000147485				17	0	0	13	5	27.7778
PREX2	0	genome.wustl.edu	37	8	69012014	69012014	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	8	69012014	69012014	A	C	SNP	PREX2	ENST00000288368	human	ensembl	74_37	+1	known	missense	c.2651	p.K884T	1.000	NULL	pfam_DH-domain,pfam_DEP_dom,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX2	HGNC	ENSG00000046889				98	0	0	89	8	8.24742
OSR2	0	genome.wustl.edu	37	8	99961704	99961704	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	8	99961704	99961704	A	C	SNP	OSR2	ENST00000457907	human	ensembl	74_37	+1	known	missense	c.887	p.K296T	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	OSR2	HGNC	ENSG00000164920				274	0	0	234	32	12.0301
COL15A1	0	genome.wustl.edu	37	9	101818614	101818614	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	9	101818614	101818614	T	G	SNP	COL15A1	ENST00000375001	human	ensembl	74_37	+1	known	missense	c.3265	p.F1089V	1.000	NULL	pfam_Collagenase_NC10/endostatin,pfam_Collagen,superfamily_C-type_lectin_fold,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	-	no_errors	COL15A1	HGNC	ENSG00000204291				124	0	0	80	24	23.0769
INVS	0	genome.wustl.edu	37	9	103002501	103002501	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	9	103002501	103002501	C	A	SNP	INVS	ENST00000262457	human	ensembl	74_37	+1	known	missense	c.775	p.L259M	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_IQ_motif_EF-hand-BS,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,smart_Ankyrin_rpt,smart_IQ_motif_EF-hand-BS,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS,prints_Ankyrin_rpt	-	no_errors	INVS	HGNC	ENSG00000119509				79	0	0	61	9	12.8571
GRIN3A	0	genome.wustl.edu	37	9	104390538	104390538	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	9	104390538	104390538	T	C	SNP	GRIN3A	ENST00000361820	human	ensembl	74_37	-1	known	missense	c.2498	p.K833R	1.000	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,superfamily_Peripla_BP_I,smart_Glu_rcpt_Glu/Gly-bd,smart_Iontro_glu_rcpt,prints_NMDA_rcpt	-	no_errors	GRIN3A	HGNC	ENSG00000198785				67	0	0	56	8	12.5
C9orf43	0	genome.wustl.edu	37	9	116185755	116185755	+	Silent	SNP	G	G	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	9	116185755	116185755	G	A	SNP	C9orf43	ENST00000288462	human	ensembl	74_37	+1	known	silent	c.633	p.A211	0.000	NULL	NULL	-	no_errors	C9orf43	HGNC	ENSG00000157653				90	0	0	65	18	21.6867
TRIM32	0	genome.wustl.edu	37	9	119461292	119461292	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	9	119461292	119461292	C	T	SNP	TRIM32	ENST00000373983	human	ensembl	74_37	+1	known	missense	c.1271	p.A424V	1.000	pfscan_NHL_repeat_subgr	pfam_NHL_repeat,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,smart_Znf_B-box,pfscan_NHL_repeat_subgr,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM32	HGNC	ENSG00000119401				242	0	0	170	33	16.2562
OR1N2	0	genome.wustl.edu	37	9	125315533	125315533	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	9	125315533	125315533	T	C	SNP	OR1N2	ENST00000373688	human	ensembl	74_37	+1	known	missense	c.85	p.F29L	0.979	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR1N2	HGNC	ENSG00000171501				98	0	0	64	10	13.5135
RALGPS1	0	genome.wustl.edu	37	9	129981048	129981048	+	Silent	SNP	A	A	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	9	129981048	129981048	A	G	SNP	RALGPS1	ENST00000259351	human	ensembl	74_37	+1	known	silent	c.1674	p.*558	1.000	NULL	pfam_RasGRF_CDC25,pfam_Pleckstrin_homology,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_RasGRF_CDC25	-	no_errors	RALGPS1	HGNC	ENSG00000136828				305	0	0	208	37	15.102
C9orf106	0	genome.wustl.edu	37	9	132084374	132084374	+	RNA	SNP	T	T	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	9	132084374	132084374	T	C	SNP	C9orf106	ENST00000316786	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	C9orf106	HGNC	ENSG00000179082				11	0	0	8	2	20
COL5A1	0	genome.wustl.edu	37	9	137713968	137713968	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	9	137713968	137713968	T	G	SNP	COL5A1	ENST00000371817	human	ensembl	74_37	+1	known	missense	c.4580	p.I1527S	0.829	pfam_Collagen	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL5A1	HGNC	ENSG00000130635				173	0	0	111	19	14.6154
PPP1R26	0	genome.wustl.edu	37	9	138378479	138378479	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	9	138378479	138378479	A	G	SNP	PPP1R26	ENST00000356818	human	ensembl	74_37	+1	known	missense	c.2123	p.K708R	0.946	NULL	NULL	-	no_errors	PPP1R26	HGNC	ENSG00000196422				40	0	0	27	2	6.89655
SNAPC4	0	genome.wustl.edu	37	9	139273391	139273391	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	9	139273391	139273391	G	C	SNP	SNAPC4	ENST00000298532	human	ensembl	74_37	-1	known	missense	c.2888	p.P963R	0.000	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	SNAPC4	HGNC	ENSG00000165684				52	0	0	23	27	54
TRPM3	0	genome.wustl.edu	37	9	73205969	73205969	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	9	73205969	73205969	T	G	SNP	TRPM3	ENST00000423814	human	ensembl	74_37	-1	known	missense	c.3246	p.E1082D	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom	-	no_errors	TRPM3	HGNC	ENSG00000083067				146	0	0	107	20	15.748
IPPK	0	genome.wustl.edu	37	9	95411816	95411816	+	Silent	SNP	G	G	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	9	95411816	95411816	G	A	SNP	IPPK	ENST00000287996	human	ensembl	74_37	-1	known	silent	c.333	p.Y111	0.997	pfam_Ins_P5_2-kin	pfam_Ins_P5_2-kin	-	no_errors	IPPK	HGNC	ENSG00000127080				80	0	0	66	20	23.2558
GUCY2F	0	genome.wustl.edu	37	X	108684663	108684663	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	X	108684663	108684663	T	G	SNP	GUCY2F	ENST00000218006	human	ensembl	74_37	-1	known	missense	c.1618	p.S540R	1.000	pfscan_Prot_kinase_dom	pfam_A/G_cyclase,pfam_ANF_lig-bd_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Haem_no_assoc-bd,superfamily_Peripla_BP_I,superfamily_A/G_cyclase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_A/G_cyclase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_A/G_cyclase	-	no_errors	GUCY2F	HGNC	ENSG00000101890				383	0	0	232	64	21.6216
TRPC5	0	genome.wustl.edu	37	X	111155770	111155770	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	X	111155770	111155770	T	G	SNP	TRPC5	ENST00000262839	human	ensembl	74_37	-1	known	missense	c.649	p.I217L	1.000	pfam_TRP_dom,tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_TRPC5_channel,prints_TRPC_channel,tigrfam_TRP_channel	-	no_errors	TRPC5	HGNC	ENSG00000072315				261	0	0	143	32	18.2857
SLITRK2	0	genome.wustl.edu	37	X	144906221	144906221	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	X	144906221	144906221	G	C	SNP	SLITRK2	ENST00000370490	human	ensembl	74_37	+1	known	missense	c.2278	p.A760P	0.997	NULL	pfam_Leu-rich_rpt,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK2	HGNC	ENSG00000185985				220	0	0	158	14	8.13953
PASD1	0	genome.wustl.edu	37	X	150840247	150840247	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	X	150840247	150840247	A	C	SNP	PASD1	ENST00000370357	human	ensembl	74_37	+1	known	missense	c.1433	p.N478T	0.000	NULL	superfamily_PAS,smart_PAS,pfscan_PAS	-	no_errors	PASD1	HGNC	ENSG00000166049				115	0	0	53	16	23.1884
MAGEB4	0	genome.wustl.edu	37	X	30260841	30260841	+	Silent	SNP	A	A	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	X	30260841	30260841	A	C	SNP	MAGEB4	ENST00000378982	human	ensembl	74_37	+1	known	silent	c.589	p.R197	0.000	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEB4	HGNC	ENSG00000120289				90	0	0	40	17	29.8246
FAM47A	0	genome.wustl.edu	37	X	34148536	34148536	+	Silent	SNP	A	A	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	X	34148536	34148536	A	G	SNP	FAM47A	ENST00000346193	human	ensembl	74_37	-1	known	silent	c.1860	p.A620	0.026	NULL	NULL	-	no_errors	FAM47A	HGNC	ENSG00000185448				120	0	0	44	16	26.6667
PAGE3	0	genome.wustl.edu	37	X	55289738	55289738	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	X	55289738	55289738	T	G	SNP	PAGE3	ENST00000374951	human	ensembl	74_37	-1	known	missense	c.139	p.S47R	0.001	pfam_GAGE	pfam_GAGE	-	no_errors	PAGE3	HGNC	ENSG00000204279				76	0	0	28	5	15.1515
FAM133A	0	genome.wustl.edu	37	X	92964511	92964511	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	X	92964511	92964511	A	C	SNP	FAM133A	ENST00000322139	human	ensembl	74_37	+1	known	missense	c.93	p.Q31H	0.998	NULL	NULL	-	no_errors	FAM133A	HGNC	ENSG00000179083				53	0	0	35	5	12.5
PCDH19	0	genome.wustl.edu	37	X	99662240	99662240	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	X	99662240	99662240	G	T	SNP	PCDH19	ENST00000373034	human	ensembl	74_37	-1	known	missense	c.1356	p.H452Q	1.000	superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH19	HGNC	ENSG00000165194				126	0	0	79	9	10.2273
SPTA1	0	genome.wustl.edu	37	1	158619716	158619716	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	1	158619716	158619716	A	-	DEL	SPTA1	ENST00000368147	human	ensembl	74_37	-1	known	frame_shift_del	c.3499	p.S1167fs	0.996	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_hand_dom,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554				62	0	0	54	9	14.2857
DCDC1	0	genome.wustl.edu	37	11	30930506	30930506	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	11	30930506	30930506	T	-	DEL	DCDC1	ENST00000339794	human	ensembl	74_37	-1	known	frame_shift_del	c.1142	p.N381fs	0.000	NULL	pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,pfscan_Doublecortin_dom,pfscan_Ricin_B_lectin	-	no_errors	DCDC1	HGNC	ENSG00000170959				99	0	0	120	9	6.97674
MRPL49	0	genome.wustl.edu	37	11	64893044	64893044	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	11	64893044	64893044	G	-	DEL	MRPL49	ENST00000279242	human	ensembl	74_37	+1	known	frame_shift_del	c.314	p.Q106fs	0.998	pfam_Ribosomal_L49/IMG2	pfam_Ribosomal_L49/IMG2	-	no_errors	MRPL49	HGNC	ENSG00000149792				89	0	0	71	22	23.6559
MIS18BP1	0	genome.wustl.edu	37	14	45711613	45711614	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	14	45711613	45711614	CT	-	DEL	MIS18BP1	ENST00000310806	human	ensembl	74_37	-1	known	frame_shift_del	c.767_766	p.S256fs	0.016:0.024	NULL	pfam_SANTA,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	MIS18BP1	HGNC	ENSG00000129534				189	0	0	109	12	9.91736
PRKCH	0	genome.wustl.edu	37	14	61789032	61789033	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	14	61789032	61789033	-	T	INS	PRKCH	ENST00000332981	human	ensembl	74_37	+1	known	frame_shift_ins	c.213_214	p.C72fs	1.000:1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pirsf_Prot_kin_PKC_delta,pfscan_C2_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,pfam_C2_dom,superfamily_Kinase-like_dom,superfamily_C2_dom,smart_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Prot_kin_PKC_delta,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_DAG/PE-bd	-	no_errors	PRKCH	HGNC	ENSG00000027075				65	0	0	34	13	27.6596
TMF1	0	genome.wustl.edu	37	3	69097029	69097042	+	Frame_Shift_Del	DEL	CTCGAGCTCGCTGA	CTCGAGCTCGCTGA	-			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	CTCGAGCTCGCTGA	CTCGAGCTCGCTGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	3	69097029	69097042	CTCGAGCTCGCTGA	-	DEL	TMF1	ENST00000543976	human	ensembl	74_37	-1	known	frame_shift_del	c.827_814	p.S272fs	1.000:0.947:0.006:1.000:1.000:1.000:1.000:1.000:0.833:0.997:1.000:0.914:1.000:1.000	NULL	pfam_TMF_TATA-bd,pfam_TMF_DNA-bd	-	no_errors	TMF1	HGNC	ENSG00000144747				63	0	0	44	8	15.3846
TTK	0	genome.wustl.edu	37	6	80751910	80751910	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	6	80751910	80751910	A	-	DEL	TTK	ENST00000369798	human	ensembl	74_37	+1	known	frame_shift_del	c.2565	p.K857fs	0.011	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TTK	HGNC	ENSG00000112742				102	0	0	72	9	11.1111
KIF24	0	genome.wustl.edu	37	9	34256919	34256919	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b302ae7-9c9a-487d-89d3-a56a33731aac	7c5c6cad-71b4-4020-a7db-e31898b12605	9	34256919	34256919	T	-	DEL	KIF24	ENST00000379166	human	ensembl	74_37	-1	known	frame_shift_del	c.2686	p.R896fs	0.002	NULL	pfam_Kinesin_motor_dom,pfam_SAM_type1,superfamily_P-loop_NTPase,superfamily_SAM/pointed,smart_Kinesin_motor_dom,pfscan_SAM,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF24	HGNC	ENSG00000186638				104	0	0	76	16	17.3913
