Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
MIIP	0	genome.wustl.edu	37	1	12091805	12091805	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	1	12091805	12091805	G	A	SNP	MIIP	ENST00000436478	human	ensembl	74_37	+1	known	missense	c.1010	p.R337Q	0.000	NULL	NULL	-	no_errors	MIIP	HGNC	ENSG00000116691				143	0	0	123	8	6.10687
FLG	0	genome.wustl.edu	37	1	152275780	152275780	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	1	152275780	152275780	G	A	SNP	FLG	ENST00000368799	human	ensembl	74_37	-1	known	missense	c.11582	p.S3861F	0.007	pfam_Filaggrin	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631				248	0	0	248	15	5.70342
FLG	0	genome.wustl.edu	37	1	152283700	152283700	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	1	152283700	152283700	C	T	SNP	FLG	ENST00000368799	human	ensembl	74_37	-1	known	missense	c.3662	p.R1221H	0.000	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631				373	0	0	352	52	12.8713
CNTN2	0	genome.wustl.edu	37	1	205039136	205039136	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	1	205039136	205039136	G	A	SNP	CNTN2	ENST00000331830	human	ensembl	74_37	+1	known	missense	c.2378	p.R793H	0.998	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CNTN2	HGNC	ENSG00000184144				54	0	0	48	3	5.88235
OBSCN	0	genome.wustl.edu	37	1	228399542	228399542	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	1	228399542	228399542	G	A	SNP	OBSCN	ENST00000422127	human	ensembl	74_37	+1	known	missense	c.58	p.V20M	0.959	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358				9	0	0	9	3	25
CAMK1D	0	genome.wustl.edu	37	10	12866468	12866468	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	10	12866468	12866468	G	C	SNP	CAMK1D	ENST00000378847	human	ensembl	74_37	+1	known	missense	c.838	p.A280P	0.996	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CAMK1D	HGNC	ENSG00000183049				33	0	0	42	3	6.66667
MYO3A	0	genome.wustl.edu	37	10	26241113	26241113	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	10	26241113	26241113	A	C	SNP	MYO3A	ENST00000265944	human	ensembl	74_37	+1	known	missense	c.74	p.E25A	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Myosin_head_motor_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_Prot_kinase_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO3A	HGNC	ENSG00000095777				58	0	0	63	8	11.2676
HSD17B7P2	0	genome.wustl.edu	37	10	38654432	38654432	+	RNA	SNP	A	A	G			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	10	38654432	38654432	A	G	SNP	HSD17B7P2	ENST00000494540	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	HSD17B7P2	HGNC	ENSG00000099251				41	0	0	48	4	7.69231
ENSG00000242288	0	genome.wustl.edu	37	10	75487057	75487057	+	RNA	SNP	C	C	T			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	10	75487057	75487057	C	T	SNP	ENSG00000242288	ENST00000399449	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-464F9.1	Clone_based_vega_gene	ENSG00000242288				103	0	0	109	8	6.83761
EXOSC1	0	genome.wustl.edu	37	10	99196244	99196244	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	10	99196244	99196244	G	C	SNP	EXOSC1	ENST00000370902	human	ensembl	74_37	-1	known	missense	c.546	p.F182L	1.000	NULL	pfam_EXOSC1,superfamily_NA-bd_OB-fold,smart_RNA-binding_domain_S1	-	no_errors	EXOSC1	HGNC	ENSG00000171311				168	0	0	167	16	8.74317
RBM7	0	genome.wustl.edu	37	11	114273598	114273598	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	11	114273598	114273598	A	G	SNP	RBM7	ENST00000540163	human	ensembl	74_37	+1	known	missense	c.308	p.H103R	0.559	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM7	HGNC	ENSG00000076053				150	0	0	128	16	11.1111
POU2F3	0	genome.wustl.edu	37	11	120168982	120168982	+	Silent	SNP	C	C	T			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	11	120168982	120168982	C	T	SNP	POU2F3	ENST00000260264	human	ensembl	74_37	+1	known	silent	c.147	p.T49	0.947	NULL	pfam_POU_specific,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_POU_specific,prints_POU,prints_TF_octamer	-	no_errors	POU2F3	HGNC	ENSG00000137709				423	0	0	361	26	6.71835
GRIK4	0	genome.wustl.edu	37	11	120702685	120702685	+	Silent	SNP	C	C	T			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	11	120702685	120702685	C	T	SNP	GRIK4	ENST00000527524	human	ensembl	74_37	+1	known	silent	c.636	p.T212	0.004	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK4	HGNC	ENSG00000149403				159	0	0	131	14	9.65517
BSX	0	genome.wustl.edu	37	11	122848366	122848366	+	Silent	SNP	G	G	A			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	11	122848366	122848366	G	A	SNP	BSX	ENST00000343035	human	ensembl	74_37	-1	known	silent	c.693	p.H231	0.973	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	BSX	HGNC	ENSG00000188909				63	0	0	54	7	11.4754
HBG1	0	genome.wustl.edu	37	11	5269648	5269648	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	11	5269648	5269648	C	T	SNP	HBG1	ENST00000330597	human	ensembl	74_37	-1	known	missense	c.385	p.A129T	0.998	superfamily_Globin-like,pfscan_Globin,prints_Haemoglobin_b,prints_Myoglobin	pfam_Globin,superfamily_Globin-like,pfscan_Globin,prints_Haemoglobin_b,prints_Myoglobin	-	no_errors	HBG1	HGNC	ENSG00000213934				69	0	0	56	6	9.67742
OR10A4	0	genome.wustl.edu	37	11	6898750	6898750	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	11	6898750	6898750	A	G	SNP	OR10A4	ENST00000379829	human	ensembl	74_37	+1	known	missense	c.872	p.Y291C	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10A4	HGNC	ENSG00000170782				127	0	0	124	11	8.14815
CLEC12B	0	genome.wustl.edu	37	12	10163368	10163368	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	12	10163368	10163368	G	T	SNP	CLEC12B	ENST00000338896	human	ensembl	74_37	+1	known	nonsense	c.10	p.E4*	0.843	NULL	pfam_C-type_lectin,pfam_Ly49,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	CLEC12B	HGNC	ENSG00000256660				29	0	0	22	3	12
DAO	0	genome.wustl.edu	37	12	109286789	109286789	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	12	109286789	109286789	C	T	SNP	DAO	ENST00000228476	human	ensembl	74_37	+1	known	missense	c.484	p.R162W	0.962	pfam_FAD-dep_OxRdtase	pfam_FAD-dep_OxRdtase	-	no_errors	DAO	HGNC	ENSG00000110887				48	0	0	32	3	8.57143
ACAD10	0	genome.wustl.edu	37	12	112140003	112140003	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	12	112140003	112140003	A	G	SNP	ACAD10	ENST00000455480	human	ensembl	74_37	+1	known	missense	c.225	p.I75M	0.002	pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_HAD-SF_ppase_IA/epoxid_hydro_N	pfam_Aminoglycoside_PTrfase,pfam_AcylCo_DH/oxidase_C,pfam_Acyl-CoA_DH_2_C,pfam_AcylCoA_DH/ox_N,pfam_Acyl-CoA_Oxase/DH_cen-dom,pfam_HAD-like_dom,superfamily_AcylCoA_DH/oxidase_NM_dom,superfamily_Kinase-like_dom,superfamily_AcylCo_DH/oxidase_C,superfamily_HAD-like_dom,prints_HAD-SF_hydro_IA,tigrfam_HAD-SF_ppase_IA/epoxid_hydro_N,tigrfam_HAD-SF_hydro_IA	-	no_errors	ACAD10	HGNC	ENSG00000111271				64	0	0	88	12	12
ZNF605	0	genome.wustl.edu	37	12	133501996	133501996	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	12	133501996	133501996	G	A	SNP	ZNF605	ENST00000360187	human	ensembl	74_37	-1	known	missense	c.1889	p.S630L	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF605	HGNC	ENSG00000196458				101	0	0	72	16	18.1818
ERBB3	0	genome.wustl.edu	37	12	56489547	56489547	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	12	56489547	56489547	T	A	SNP	ERBB3	ENST00000267101	human	ensembl	74_37	+1	known	missense	c.2012	p.I671N	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Furin-like_Cys-rich_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	ERBB3	HGNC	ENSG00000065361				81	0	0	75	19	20.2128
SDR9C7	0	genome.wustl.edu	37	12	57323335	57323335	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	12	57323335	57323335	C	T	SNP	SDR9C7	ENST00000293502	human	ensembl	74_37	-1	known	missense	c.563	p.R188H	1.000	pfam_DH_sc/Rdtase_SDR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	pfam_DH_sc/Rdtase_SDR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	SDR9C7	HGNC	ENSG00000170426				75	0	0	54	16	22.8571
PTPN6	0	genome.wustl.edu	37	12	7065608	7065608	+	Silent	SNP	C	C	T			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	12	7065608	7065608	C	T	SNP	PTPN6	ENST00000456013	human	ensembl	74_37	+1	known	silent	c.951	p.N317	0.538	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pirsf_Tyr_Pase_non-rcpt_typ-6/11,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_SH2,smart_SH2,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-6/11,pfscan_SH2,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_SH2	-	no_errors	PTPN6	HGNC	ENSG00000111679				93	0	0	69	16	18.8235
KLHL1	0	genome.wustl.edu	37	13	70314635	70314635	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	13	70314635	70314635	T	C	SNP	KLHL1	ENST00000377844	human	ensembl	74_37	-1	known	missense	c.1693	p.S565G	1.000	pfam_Kelch_1,smart_Kelch_1	pfam_Kelch_1,pfam_Kelch_2,pfam_BACK,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pfscan_BTB/POZ-like	-	no_errors	KLHL1	HGNC	ENSG00000150361				79	0	0	84	10	10.6383
RALGAPA1	0	genome.wustl.edu	37	14	36143463	36143463	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	14	36143463	36143463	A	C	SNP	RALGAPA1	ENST00000258840	human	ensembl	74_37	-1	known	missense	c.3463	p.S1155A	1.000	superfamily_ARM-type_fold	pfam_Rap_GAP_dom,superfamily_ARM-type_fold,pfscan_Rap_GAP_dom	-	no_errors	RALGAPA1	HGNC	ENSG00000174373				54	0	0	48	4	7.69231
RIN3	0	genome.wustl.edu	37	14	93118183	93118183	+	Silent	SNP	G	G	A			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	14	93118183	93118183	G	A	SNP	RIN3	ENST00000216487	human	ensembl	74_37	+1	known	silent	c.789	p.P263	0.000	NULL	pfam_VPS9,smart_SH2,smart_VPS9_subgr,pfscan_Ras-assoc,pfscan_SH2,pfscan_VPS9	-	no_errors	RIN3	HGNC	ENSG00000100599				146	0	0	96	11	10.2804
LOXL1	0	genome.wustl.edu	37	15	74239441	74239441	+	Silent	SNP	C	C	T			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	15	74239441	74239441	C	T	SNP	LOXL1	ENST00000261921	human	ensembl	74_37	+1	known	silent	c.1383	p.Y461	0.955	pfam_Lysyl_oxidase,prints_Lysyl_oxidase	pfam_Lysyl_oxidase,prints_Lysyl_oxidase	-	no_errors	LOXL1	HGNC	ENSG00000129038				21	0	0	30	5	14.2857
ZNF710	0	genome.wustl.edu	37	15	90611201	90611201	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	15	90611201	90611201	G	A	SNP	ZNF710	ENST00000268154	human	ensembl	74_37	+1	known	missense	c.832	p.V278M	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF710	HGNC	ENSG00000140548				78	0	0	85	7	7.6087
E4F1	0	genome.wustl.edu	37	16	2284270	2284270	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	16	2284270	2284270	C	T	SNP	E4F1	ENST00000301727	human	ensembl	74_37	+1	known	missense	c.1474	p.R492C	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	E4F1	HGNC	ENSG00000167967				55	0	0	44	4	8.33333
SULT1A2	0	genome.wustl.edu	37	16	28603796	28603796	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	16	28603796	28603796	T	C	SNP	SULT1A2	ENST00000533150	human	ensembl	74_37	-1	novel	missense	c.464	p.Q155R	0.000	NULL	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	SULT1A2	HGNC	ENSG00000197165				26	0	0	22	6	21.4286
PAGR1	0	genome.wustl.edu	37	16	29828032	29828032	+	Silent	SNP	C	C	T			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	16	29828032	29828032	C	T	SNP	PAGR1	ENST00000609618	human	ensembl	74_37	+1	known	silent	c.186	p.S62	0.000	NULL	NULL	-	no_errors	PAGR1	Uniprot_gn	ENSG00000263136				18	0	0	12	3	20
ST3GAL2	0	genome.wustl.edu	37	16	70428945	70428945	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	16	70428945	70428945	G	A	SNP	ST3GAL2	ENST00000342907	human	ensembl	74_37	-1	known	missense	c.473	p.S158L	1.000	pfam_Glyco_trans_29,pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST3GAL2	HGNC	ENSG00000157350				185	0	0	182	19	9.45274
MLKL	0	genome.wustl.edu	37	16	74708873	74708873	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	16	74708873	74708873	G	A	SNP	MLKL	ENST00000308807	human	ensembl	74_37	-1	known	missense	c.1366	p.R456W	0.072	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MLKL	HGNC	ENSG00000168404				52	0	0	50	3	5.66038
PRPF8	0	genome.wustl.edu	37	17	1559814	1559814	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	17	1559814	1559814	G	A	SNP	PRPF8	ENST00000304992	human	ensembl	74_37	-1	known	missense	c.5665	p.L1889F	1.000	pfam_PRP8_domainIV	pfam_PROCN,pfam_PRP8_domainIV,pfam_Prp8_U6-snRNA-bd,pfam_PRO8NT,pfam_Prp8_U5-snRNA-bd,pfam_PROCT,pfam_RRM_spliceosomal_PrP8,pfam_JAB_MPN_dom,superfamily_Cupredoxin,superfamily_Histone-fold,smart_JAB_MPN_dom	-	no_errors	PRPF8	HGNC	ENSG00000174231				58	0	0	52	4	7.14286
USP32P2	0	genome.wustl.edu	37	17	18420772	18420772	+	RNA	SNP	G	G	A			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	17	18420772	18420772	G	A	SNP	USP32P2	ENST00000412260	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	USP32P2	HGNC	ENSG00000233327				61	0	0	46	4	8
KRT25	0	genome.wustl.edu	37	17	38904587	38904587	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	17	38904587	38904587	C	T	SNP	KRT25	ENST00000312150	human	ensembl	74_37	-1	known	missense	c.1295	p.R432H	0.998	NULL	pfam_IF,prints_Keratin_I	-	no_errors	KRT25	HGNC	ENSG00000204897				129	0	0	133	13	8.90411
KANSL1	0	genome.wustl.edu	37	17	44109659	44109659	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	17	44109659	44109659	G	T	SNP	KANSL1	ENST00000262419	human	ensembl	74_37	-1	known	nonsense	c.2844	p.Y948*	1.000	NULL	NULL	-	no_errors	KANSL1	HGNC	ENSG00000120071				127	0	0	120	7	5.51181
KIF2B	0	genome.wustl.edu	37	17	51900906	51900906	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	17	51900906	51900906	G	A	SNP	KIF2B	ENST00000268919	human	ensembl	74_37	+1	known	missense	c.512	p.R171Q	0.874	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF2B	HGNC	ENSG00000141200				77	0	0	65	5	7.14286
PIK3C3	0	genome.wustl.edu	37	18	39637994	39637994	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	18	39637994	39637994	C	T	SNP	PIK3C3	ENST00000262039	human	ensembl	74_37	+1	known	missense	c.2411	p.T804M	1.000	pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pirsf_PI3K_Vps34,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_C2_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pirsf_PI3K_Vps34,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3C3	HGNC	ENSG00000078142				64	0	0	58	4	6.45161
KATNAL2	0	genome.wustl.edu	37	18	44579393	44579393	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	18	44579393	44579393	A	G	SNP	KATNAL2	ENST00000245121	human	ensembl	74_37	+1	known	missense	c.49	p.I17V	1.000	NULL	pfam_ATPase_AAA_core,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	KATNAL2	HGNC	ENSG00000167216				180	0	0	140	10	6.66667
CXXC1	0	genome.wustl.edu	37	18	47812195	47812195	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	18	47812195	47812195	C	T	SNP	CXXC1	ENST00000412036	human	ensembl	74_37	-1	known	missense	c.563	p.R188Q	1.000	pfam_Znf_CXXC,pfscan_Znf_CXXC	pfam_CpG-bd_C,pfam_Znf_CXXC,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	CXXC1	HGNC	ENSG00000154832				89	0	0	75	5	6.25
CC2D1A	0	genome.wustl.edu	37	19	14031623	14031623	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	19	14031623	14031623	G	A	SNP	CC2D1A	ENST00000318003	human	ensembl	74_37	+1	known	missense	c.1529	p.R510Q	0.973	smart_DM14	pfam_C2_dom,superfamily_C2_dom,smart_DM14,smart_C2_dom	-	no_errors	CC2D1A	HGNC	ENSG00000132024				76	0	0	46	4	8
SLC1A6	0	genome.wustl.edu	37	19	15083565	15083565	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	19	15083565	15083565	A	G	SNP	SLC1A6	ENST00000221742	human	ensembl	74_37	-1	known	missense	c.158	p.L53P	1.000	NULL	pfam_Na-dicarboxylate_symporter,prints_Na-dicarboxylate_symporter	-	no_errors	SLC1A6	HGNC	ENSG00000105143				22	0	0	27	2	6.89655
ZNF208	0	genome.wustl.edu	37	19	22155029	22155029	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	19	22155029	22155029	T	A	SNP	ZNF208	ENST00000397126	human	ensembl	74_37	-1	novel	missense	c.2807	p.K936M	0.002	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF208	HGNC	ENSG00000160321				39	0	0	45	5	10
ZNF600	0	genome.wustl.edu	37	19	53269036	53269036	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	19	53269036	53269036	C	A	SNP	ZNF600	ENST00000338230	human	ensembl	74_37	-1	known	missense	c.1973	p.R658I	0.016	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF600	HGNC	ENSG00000189190				97	0	0	106	7	6.19469
NLRP4	0	genome.wustl.edu	37	19	56369635	56369635	+	Silent	SNP	G	G	T			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	19	56369635	56369635	G	T	SNP	NLRP4	ENST00000301295	human	ensembl	74_37	+1	known	silent	c.876	p.T292	0.000	NULL	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP4	HGNC	ENSG00000160505				79	0	0	72	7	8.86076
MUC16	0	genome.wustl.edu	37	19	9071751	9071751	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	19	9071751	9071751	T	G	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.15695	p.K5232T	0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				83	0	0	78	5	6.0241
GLI2	0	genome.wustl.edu	37	2	121712927	121712927	+	Silent	SNP	G	G	A			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	2	121712927	121712927	G	A	SNP	GLI2	ENST00000361492	human	ensembl	74_37	+1	known	silent	c.564	p.A188	0.110	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI2	HGNC	ENSG00000074047				46	0	0	30	4	11.7647
PLCL1	0	genome.wustl.edu	37	2	198950136	198950136	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	2	198950136	198950136	T	G	SNP	PLCL1	ENST00000428675	human	ensembl	74_37	+1	known	missense	c.1895	p.V632G	1.000	pfam_PLipase_C_Pinositol-sp_Y,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_Pinositol-sp_Y,pfscan_PLipase_C_Pinositol-sp_Y	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_Pleckstrin_homology,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCL1	HGNC	ENSG00000115896				36	0	0	35	5	12.5
APOB	0	genome.wustl.edu	37	2	21229930	21229930	+	Silent	SNP	G	G	A			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	2	21229930	21229930	G	A	SNP	APOB	ENST00000233242	human	ensembl	74_37	-1	known	silent	c.9810	p.F3270	0.483	NULL	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674				54	0	0	47	5	9.61538
HEATR5B	0	genome.wustl.edu	37	2	37289090	37289090	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	2	37289090	37289090	A	T	SNP	HEATR5B	ENST00000233099	human	ensembl	74_37	-1	known	missense	c.1688	p.M563K	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	HEATR5B	HGNC	ENSG00000008869				82	0	0	71	9	11.25
ANKEF1	0	genome.wustl.edu	37	20	10023849	10023849	+	Silent	SNP	C	C	T			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	20	10023849	10023849	C	T	SNP	ANKEF1	ENST00000378380	human	ensembl	74_37	+1	known	silent	c.426	p.V142	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EF_hand_dom,prints_Ankyrin_rpt	-	no_errors	ANKEF1	HGNC	ENSG00000132623				99	0	0	92	11	10.6796
MACROD2	0	genome.wustl.edu	37	20	15913947	15913947	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	20	15913947	15913947	A	C	SNP	MACROD2	ENST00000310348	human	ensembl	74_37	+1	known	missense	c.802	p.S268R	0.155	NULL	pfam_Macro_dom,smart_Macro_dom,pfscan_Macro_dom	-	no_errors	MACROD2	HGNC	ENSG00000172264				50	0	0	41	3	6.81818
NINL	0	genome.wustl.edu	37	20	25457205	25457205	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	20	25457205	25457205	G	A	SNP	NINL	ENST00000278886	human	ensembl	74_37	-1	known	missense	c.2722	p.R908C	0.000	NULL	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	NINL	HGNC	ENSG00000101004				41	0	0	31	5	13.8889
CDH4	0	genome.wustl.edu	37	20	60503377	60503377	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	20	60503377	60503377	C	T	SNP	CDH4	ENST00000360469	human	ensembl	74_37	+1	known	missense	c.1901	p.T634M	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Cadherin/Desmocollin	-	no_errors	CDH4	HGNC	ENSG00000179242				129	0	0	101	14	12.1739
COL20A1	0	genome.wustl.edu	37	20	61945434	61945434	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	20	61945434	61945434	C	T	SNP	COL20A1	ENST00000326996	human	ensembl	74_37	+1	known	missense	c.2369	p.P790L	0.801	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_VWF_A,pfam_Collagen,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL20A1	HGNC	ENSG00000101203				36	0	0	27	6	18.1818
CHEK2	0	genome.wustl.edu	37	22	29121096	29121096	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	22	29121096	29121096	T	C	SNP	CHEK2	ENST00000382580	human	ensembl	74_37	-1	known	missense	c.590	p.N197S	1.000	pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_FHA_dom,superfamily_Kinase-like_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_FHA_dom,pfscan_Prot_kinase_dom	-	no_errors	CHEK2	HGNC	ENSG00000183765				80	0	0	58	10	14.7059
KLHDC7B	0	genome.wustl.edu	37	22	50987690	50987690	+	Silent	SNP	C	C	T			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	22	50987690	50987690	C	T	SNP	KLHDC7B	ENST00000395676	human	ensembl	74_37	+1	known	silent	c.1095	p.S365	0.071	pfam_Kelch_1,smart_Kelch_1	pfam_Kelch_1,smart_Kelch_1	-	no_errors	KLHDC7B	HGNC	ENSG00000130487				85	0	0	58	11	15.942
RBMS3	0	genome.wustl.edu	37	3	29938904	29938904	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	3	29938904	29938904	C	T	SNP	RBMS3	ENST00000383767	human	ensembl	74_37	+1	known	missense	c.826	p.R276C	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,prints_Hud_Sxl_RNA	-	no_errors	RBMS3	HGNC	ENSG00000144642				151	0	0	150	23	13.2948
RHOA	0	genome.wustl.edu	37	3	49405969	49405969	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	3	49405969	49405969	A	C	SNP	RHOA	ENST00000418115	human	ensembl	74_37	-1	known	missense	c.169	p.L57V	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RHOA	HGNC	ENSG00000067560				92	0	0	75	11	12.7907
FAT4	0	genome.wustl.edu	37	4	126412194	126412194	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	4	126412194	126412194	A	C	SNP	FAT4	ENST00000394329	human	ensembl	74_37	+1	known	missense	c.14217	p.Q4739H	0.934	NULL	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159				72	0	0	76	7	8.43373
FSTL5	0	genome.wustl.edu	37	4	162307467	162307467	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	4	162307467	162307467	C	T	SNP	FSTL5	ENST00000306100	human	ensembl	74_37	-1	known	missense	c.1976	p.G659D	1.000	NULL	pfam_Ig_I-set,pfam_Kazal_dom,pfam_Ig_V-set,smart_Kazal_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_EF_hand_dom,pfscan_Ig-like_dom	-	no_errors	FSTL5	HGNC	ENSG00000168843				65	0	0	53	3	5.35714
ADRA2C	0	genome.wustl.edu	37	4	3769558	3769558	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	4	3769558	3769558	C	T	SNP	ADRA2C	ENST00000330055	human	ensembl	74_37	+1	known	missense	c.1225	p.R409C	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_ADRA2C_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_ADRA2C_rcpt,prints_GPCR_Rhodpsn,prints_ADR_fam	-	no_errors	ADRA2C	HGNC	ENSG00000184160				29	0	0	26	3	10.3448
TECRL	0	genome.wustl.edu	37	4	65188509	65188509	+	Silent	SNP	G	G	A			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	4	65188509	65188509	G	A	SNP	TECRL	ENST00000381210	human	ensembl	74_37	-1	known	silent	c.333	p.G111	1.000	NULL	pfam_3-oxo-5_a-steroid_4-DH_C,pfscan_3-oxo-5_a-steroid_4-DH_C	-	no_errors	TECRL	HGNC	ENSG00000205678				30	0	0	41	4	8.88889
APC	0	genome.wustl.edu	37	5	112174605	112174605	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	5	112174605	112174605	G	A	SNP	APC	ENST00000257430	human	ensembl	74_37	+1	known	missense	c.3314	p.R1105Q	1.000	NULL	pfam_APC_basic_dom,pfam_EB1-bd,pfam_APC_Cys-rich_rpt,pfam_Armadillo,pfam_APC_dom,pfam_SAMP,pfam_APC_15aa_rpt,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	APC	HGNC	ENSG00000134982				97	0	0	82	19	18.8119
DMXL1	0	genome.wustl.edu	37	5	118533559	118533559	+	Nonsense_Mutation	SNP	T	T	A			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	5	118533559	118533559	T	A	SNP	DMXL1	ENST00000539542	human	ensembl	74_37	+1	known	nonsense	c.7653	p.Y2551*	0.998	NULL	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL1	HGNC	ENSG00000172869				141	0	0	121	14	10.3704
PCDHA13	0	genome.wustl.edu	37	5	140261955	140261955	+	Silent	SNP	C	C	T			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	5	140261955	140261955	C	T	SNP	PCDHA13	ENST00000289272	human	ensembl	74_37	+1	known	silent	c.102	p.S34	0.884	pfam_Cadherin_N,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA13	HGNC	ENSG00000239389				139	1	0.714286	105	9	7.89474
C5orf42	0	genome.wustl.edu	37	5	37201824	37201824	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	5	37201824	37201824	G	A	SNP	C5orf42	ENST00000425232	human	ensembl	74_37	-1	known	missense	c.3376	p.L1126F	1.000	NULL	superfamily_Quino_amine_DH_bsu	-	no_errors	C5orf42	HGNC	ENSG00000197603				112	0	0	106	11	9.40171
RSPO3	0	genome.wustl.edu	37	6	127471624	127471624	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	6	127471624	127471624	A	C	SNP	RSPO3	ENST00000368317	human	ensembl	74_37	+1	known	missense	c.343	p.K115Q	1.000	superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat	pfam_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_Thrombospondin_1_rpt,smart_Furin_repeat,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	RSPO3	HGNC	ENSG00000146374				60	0	0	70	4	5.40541
SYNJ2	0	genome.wustl.edu	37	6	158516672	158516672	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	6	158516672	158516672	T	G	SNP	SYNJ2	ENST00000355585	human	ensembl	74_37	+1	known	missense	c.3767	p.F1256C	0.000	NULL	pfam_Syja_N,pfam_DUF1866,pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc,pfscan_RRM_dom,pfscan_Syja_N	-	no_errors	SYNJ2	HGNC	ENSG00000078269				121	0	0	104	11	9.56522
WDR27	0	genome.wustl.edu	37	6	170068234	170068234	+	Silent	SNP	G	G	A			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	6	170068234	170068234	G	A	SNP	WDR27	ENST00000448612	human	ensembl	74_37	-1	known	silent	c.504	p.R168	0.010	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR27	HGNC	ENSG00000184465				70	0	0	67	8	10.6667
EYS	0	genome.wustl.edu	37	6	66200566	66200566	+	Silent	SNP	T	T	C			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	6	66200566	66200566	T	C	SNP	EYS	ENST00000370616	human	ensembl	74_37	-1	known	silent	c.783	p.Q261	0.002	smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	pfam_Laminin_G,pfam_EG-like_dom,superfamily_ConA-like_lec_gl_sf,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	EYS	HGNC	ENSG00000188107				58	0	0	44	7	13.7255
EPHA7	0	genome.wustl.edu	37	6	93956675	93956675	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	6	93956675	93956675	C	T	SNP	EPHA7	ENST00000369303	human	ensembl	74_37	-1	known	missense	c.2561	p.R854H	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHA7	HGNC	ENSG00000135333				43	0	0	37	5	11.9048
DPY19L1	0	genome.wustl.edu	37	7	35051041	35051041	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	7	35051041	35051041	G	A	SNP	DPY19L1	ENST00000310974	human	ensembl	74_37	-1	known	missense	c.352	p.R118W	0.999	pfam_Dpy-19	pfam_Dpy-19	-	no_errors	DPY19L1	HGNC	ENSG00000173852				38	0	0	35	3	7.89474
DPY19L1	0	genome.wustl.edu	37	7	35051048	35051048	+	Silent	SNP	A	A	G			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	7	35051048	35051048	A	G	SNP	DPY19L1	ENST00000310974	human	ensembl	74_37	-1	known	silent	c.345	p.S115	1.000	pfam_Dpy-19	pfam_Dpy-19	-	no_errors	DPY19L1	HGNC	ENSG00000173852				39	0	0	38	3	7.31707
WBSCR17	0	genome.wustl.edu	37	7	70853293	70853293	+	Silent	SNP	G	G	T			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	7	70853293	70853293	G	T	SNP	WBSCR17	ENST00000333538	human	ensembl	74_37	+1	known	silent	c.495	p.L165	1.000	pfam_Glyco_trans_2	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	WBSCR17	HGNC	ENSG00000185274				82	0	0	54	5	8.47458
TRPS1	0	genome.wustl.edu	37	8	116632246	116632246	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	8	116632246	116632246	T	C	SNP	TRPS1	ENST00000395715	human	ensembl	74_37	-1	known	missense	c.79	p.S27G	1.000	NULL	pfam_Znf_GATA,smart_Znf_C2H2-like,smart_Znf_GATA,pfscan_Znf_C2H2,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	TRPS1	HGNC	ENSG00000104447				55	0	0	39	3	7.14286
DLGAP2	0	genome.wustl.edu	37	8	1497743	1497743	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	8	1497743	1497743	C	T	SNP	DLGAP2	ENST00000421627	human	ensembl	74_37	+1	known	missense	c.884	p.T295M	0.999	NULL	pfam_GKAP	-	no_errors	DLGAP2	HGNC	ENSG00000198010				13	0	0	11	3	21.4286
TM2D2	0	genome.wustl.edu	37	8	38853731	38853731	+	Splice_Site	SNP	C	C	T			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	8	38853731	38853731	C	T	SNP	TM2D2	ENST00000456397	human	ensembl	74_37	-1	known	splice_site	c.227+1	e1+1	1.000	-	-	-	no_errors	TM2D2	HGNC	ENSG00000169490				34	0	0	31	2	6.06061
ANK1	0	genome.wustl.edu	37	8	41577290	41577290	+	Silent	SNP	G	G	A			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	8	41577290	41577290	G	A	SNP	ANK1	ENST00000396942	human	ensembl	74_37	-1	known	silent	c.996	p.D332	0.021	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,smart_Ankyrin_rpt,smart_ZU5,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK1	HGNC	ENSG00000029534				181	0	0	138	10	6.75676
NPBWR1	0	genome.wustl.edu	37	8	53852963	53852963	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	8	53852963	53852963	G	A	SNP	NPBWR1	ENST00000331251	human	ensembl	74_37	+1	known	missense	c.496	p.V166I	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Neuropept_B/W_rcpt,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Neuropept_B/W_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt,prints_Opioid_rcpt	-	no_errors	NPBWR1	HGNC	ENSG00000183729				15	0	0	19	2	9.52381
GPR21	0	genome.wustl.edu	37	9	125797424	125797424	+	Silent	SNP	G	G	A			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	9	125797424	125797424	G	A	SNP	GPR21	ENST00000373642	human	ensembl	74_37	+1	known	silent	c.579	p.L193	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR21	HGNC	ENSG00000188394				127	0	0	137	9	6.16438
SURF6	0	genome.wustl.edu	37	9	136199499	136199499	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	9	136199499	136199499	G	A	SNP	SURF6	ENST00000372022	human	ensembl	74_37	-1	known	missense	c.491	p.A164V	0.040	pfam_Surf6	pfam_Surf6	-	no_errors	SURF6	HGNC	ENSG00000148296				157	0	0	132	12	8.33333
SLC34A3	0	genome.wustl.edu	37	9	140130470	140130470	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	9	140130470	140130470	C	T	SNP	SLC34A3	ENST00000361134	human	ensembl	74_37	+1	known	missense	c.1402	p.R468W	1.000	tigrfam_Na/Pi_transpt	pfam_Na/Pi_transpt,tigrfam_Na/Pi_transpt	-	no_errors	SLC34A3	HGNC	ENSG00000198569				126	0	0	95	5	5
SLITRK4	0	genome.wustl.edu	37	X	142717006	142717006	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	X	142717006	142717006	A	T	SNP	SLITRK4	ENST00000338017	human	ensembl	74_37	-1	known	missense	c.1919	p.V640D	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK4	HGNC	ENSG00000179542				40	0	0	58	8	12.1212
GABRA3	0	genome.wustl.edu	37	X	151336800	151336800	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	X	151336800	151336800	C	A	SNP	GABRA3	ENST00000370314	human	ensembl	74_37	-1	known	missense	c.1379	p.R460L	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_GABAA_rcpt,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_GABBAa3_rcpt,prints_GABAA_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GABRA3	HGNC	ENSG00000011677				91	0	0	77	13	14.4444
GPR64	0	genome.wustl.edu	37	X	19045346	19045346	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	X	19045346	19045346	C	A	SNP	GPR64	ENST00000379869	human	ensembl	74_37	-1	known	missense	c.461	p.S154I	0.068	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR64	HGNC	ENSG00000173698				119	0	0	109	35	24.3056
USP9X	0	genome.wustl.edu	37	X	41043383	41043383	+	Splice_Site	SNP	T	T	C			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	X	41043383	41043383	T	C	SNP	USP9X	ENST00000324545	human	ensembl	74_37	+1	known	splice_site	c.3279+2	e21+2	1.000	-	-	-	no_errors	USP9X	HGNC	ENSG00000124486				44	0	0	50	11	18.0328
FGD1	0	genome.wustl.edu	37	X	54472781	54472781	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	X	54472781	54472781	G	A	SNP	FGD1	ENST00000375135	human	ensembl	74_37	-1	known	missense	c.2647	p.R883W	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Znf_FYVE,superfamily_DH-domain,superfamily_Znf_FYVE_PHD,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD1	HGNC	ENSG00000102302				16	0	0	14	3	17.6471
KIAA2022	0	genome.wustl.edu	37	X	73960013	73960013	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	X	73960013	73960013	T	G	SNP	KIAA2022	ENST00000055682	human	ensembl	74_37	-1	known	missense	c.4379	p.E1460A	1.000	NULL	NULL	-	no_errors	KIAA2022	HGNC	ENSG00000050030				36	0	0	29	4	12.1212
CYSLTR1	0	genome.wustl.edu	37	X	77529240	77529240	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	X	77529240	77529240	C	T	SNP	CYSLTR1	ENST00000373304	human	ensembl	74_37	-1	known	missense	c.4	p.D2N	0.994	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfam_7TM_GPCR_serpentine_rcpt_Srv,prints_Cyst_leuk_rcpt,prints_CLT1_recept,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	CYSLTR1	HGNC	ENSG00000173198				53	0	0	48	14	22.5806
FAM46D	0	genome.wustl.edu	37	X	79698243	79698243	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	X	79698243	79698243	A	C	SNP	FAM46D	ENST00000308293	human	ensembl	74_37	+1	known	missense	c.205	p.S69R	1.000	pfam_DUF1693	pfam_DUF1693	-	no_errors	FAM46D	HGNC	ENSG00000174016				52	0	0	53	17	24.2857
POU3F4	0	genome.wustl.edu	37	X	82764037	82764037	+	Silent	SNP	C	C	T			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	X	82764037	82764037	C	T	SNP	POU3F4	ENST00000373200	human	ensembl	74_37	+1	known	silent	c.705	p.F235	1.000	pfam_POU_specific,superfamily_Lambda_DNA-bd_dom,smart_POU_specific,pirsf_Transcription_factor_POU,pfscan_POU_specific,prints_POU	pfam_POU_specific,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeobox_dom,pirsf_Transcription_factor_POU,pfscan_Homeobox_dom,pfscan_POU_specific,prints_POU	-	no_errors	POU3F4	HGNC	ENSG00000196767				48	0	0	22	9	29.0323
TMBIM4	0	genome.wustl.edu	37	12	66531936	66531937	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	12	66531936	66531937	-	A	INS	TMBIM4	ENST00000358230	human	ensembl	74_37	-1	known	frame_shift_ins	c.521_520	p.Y174fs	0.856:0.028	pfam_Bax_inhibitor_1-related	pfam_Bax_inhibitor_1-related	-	no_errors	TMBIM4	HGNC	ENSG00000155957				23	0	0	17	7	29.1667
TGFBR2	0	genome.wustl.edu	37	3	30713544	30713546	+	In_Frame_Del	DEL	AGA	AGA	-			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	3	30713544	30713546	AGA	-	DEL	TGFBR2	ENST00000359013	human	ensembl	74_37	+1	known	in_frame_del	c.944_946	p.K316in_frame_del	1.000:1.000:1.000	pirsf_Transform_growth_fac-b_typ-2,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Transform_growth_fac-b_typ-2,pfam_Transforming_GF_b_rcpt_2_ecto,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_TGFB_receptor,pfscan_Prot_kinase_dom	-	no_errors	TGFBR2	HGNC	ENSG00000163513				114	0	0	110	6	5.17241
SLC2A9	0	genome.wustl.edu	37	4	10027510	10027510	+	RNA	DEL	A	A	-			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	4	10027510	10027510	A	-	DEL	SLC2A9	ENST00000509214	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SLC2A9	HGNC	ENSG00000109667				35	0	0	42	4	8.69565
GRK4	0	genome.wustl.edu	37	4	3040280	3040280	+	RNA	DEL	A	A	-			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	4	3040280	3040280	A	-	DEL	GRK4	ENST00000504308	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	GRK4	HGNC	ENSG00000125388				20	0	0	14	4	22.2222
SRPK1	0	genome.wustl.edu	37	6	35810383	35810384	+	Splice_Site	INS	-	-	A			TCGA-BR-6563-01A-13D-2053-08	TCGA-BR-6563-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ef0d519-c910-4490-b9b0-e1e52ae95802	eaffeea4-d428-4d1a-b0bf-3760c79fd5c1	6	35810383	35810384	-	A	INS	SRPK1	ENST00000373825	human	ensembl	74_37	-1	known	splice_site_ins	c.1621-3_1621-2	e14-2	1.000:0.980	-	-	-	no_errors	SRPK1	HGNC	ENSG00000096063				21	0	0	18	2	10
