Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
COL11A1	0	genome.wustl.edu	37	1	103544369	103544369	+	Silent	SNP	A	A	T			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	1	103544369	103544369	A	T	SNP	COL11A1	ENST00000358392	human	ensembl	74_37	-1	known	silent	c.333	p.I111	0.942	superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL11A1	HGNC	ENSG00000060718				29	0	0	23	13	36.1111
ALX3	0	genome.wustl.edu	37	1	110607471	110607471	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	1	110607471	110607471	C	T	SNP	ALX3	ENST00000369792	human	ensembl	74_37	-1	known	missense	c.332	p.R111Q	0.452	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	ALX3	HGNC	ENSG00000156150				77	0	0	63	5	7.35294
MFN2	0	genome.wustl.edu	37	1	12069766	12069766	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	1	12069766	12069766	C	G	SNP	MFN2	ENST00000235329	human	ensembl	74_37	+1	known	missense	c.2187	p.S729R	1.000	pfam_Fzo/mitofusin_HR2	pfam_Fzo/mitofusin_HR2,pfam_Dynamin_GTPase,superfamily_P-loop_NTPase	-	no_errors	MFN2	HGNC	ENSG00000116688				80	0	0	72	4	5.26316
GJA5	0	genome.wustl.edu	37	1	147230319	147230319	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	1	147230319	147230319	C	T	SNP	GJA5	ENST00000271348	human	ensembl	74_37	-1	known	missense	c.1028	p.R343H	0.999	NULL	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin,prints_Connexin40	-	no_errors	GJA5	HGNC	ENSG00000143140				93	0	0	84	12	12.5
NUP210L	0	genome.wustl.edu	37	1	154127377	154127377	+	Silent	SNP	G	G	A			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	1	154127377	154127377	G	A	SNP	NUP210L	ENST00000368559	human	ensembl	74_37	-1	known	silent	c.144	p.F48	0.980	NULL	pfam_Big_2,superfamily_Invasin/intimin_cell_adhesion,smart_Big_2	-	no_errors	NUP210L	HGNC	ENSG00000143552				45	0	0	45	4	8.16327
IGSF9	0	genome.wustl.edu	37	1	159906263	159906263	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	1	159906263	159906263	C	T	SNP	IGSF9	ENST00000368094	human	ensembl	74_37	-1	known	missense	c.599	p.S200N	0.412	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	IGSF9	HGNC	ENSG00000085552				53	0	0	58	7	10.7692
TNN	0	genome.wustl.edu	37	1	175087816	175087816	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	1	175087816	175087816	G	A	SNP	TNN	ENST00000239462	human	ensembl	74_37	+1	known	missense	c.2506	p.G836R	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_Fibronectin_type3	-	no_errors	TNN	HGNC	ENSG00000120332				91	0	0	73	7	8.75
FAM129A	0	genome.wustl.edu	37	1	184787881	184787881	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	1	184787881	184787881	A	G	SNP	FAM129A	ENST00000367511	human	ensembl	74_37	-1	known	missense	c.1064	p.M355T	1.000	NULL	NULL	-	no_errors	FAM129A	HGNC	ENSG00000135842				169	0	0	173	18	9.42408
KIF14	0	genome.wustl.edu	37	1	200584676	200584676	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	1	200584676	200584676	G	C	SNP	KIF14	ENST00000367350	human	ensembl	74_37	-1	known	missense	c.1174	p.H392D	0.998	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,smart_FHA_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF14	HGNC	ENSG00000118193				58	0	0	25	19	43.1818
TNNT2	0	genome.wustl.edu	37	1	201337322	201337322	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	1	201337322	201337322	G	A	SNP	TNNT2	ENST00000458432	human	ensembl	74_37	-1	known	missense	c.137	p.A46V	0.994	NULL	pfam_Troponin	-	no_errors	TNNT2	HGNC	ENSG00000118194				91	0	0	52	8	13.3333
FAM177B	0	genome.wustl.edu	37	1	222920036	222920036	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	1	222920036	222920036	A	C	SNP	FAM177B	ENST00000360827	human	ensembl	74_37	+1	known	missense	c.149	p.Q50P	0.021	NULL	NULL	-	no_errors	FAM177B	HGNC	ENSG00000197520				27	0	0	29	3	9.375
OR2L3	0	genome.wustl.edu	37	1	248224383	248224383	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	1	248224383	248224383	C	T	SNP	OR2L3	ENST00000359959	human	ensembl	74_37	+1	known	missense	c.400	p.R134C	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2L3	HGNC	ENSG00000198128				231	0	0	127	101	44.2982
AHDC1	0	genome.wustl.edu	37	1	27876482	27876482	+	Silent	SNP	C	C	A			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	1	27876482	27876482	C	A	SNP	AHDC1	ENST00000247087	human	ensembl	74_37	-1	known	silent	c.2145	p.P715	0.024	NULL	NULL	-	no_errors	AHDC1	HGNC	ENSG00000126705				34	0	0	30	3	9.09091
ACTRT2	0	genome.wustl.edu	37	1	2938986	2938986	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	1	2938986	2938986	G	C	SNP	ACTRT2	ENST00000378404	human	ensembl	74_37	+1	known	missense	c.736	p.D246H	0.998	pfam_Actin-related,smart_Actin-related,prints_Actin-related	pfam_Actin-related,smart_Actin-related,prints_Actin-related	-	no_errors	ACTRT2	HGNC	ENSG00000169717				85	0	0	51	4	7.27273
CSMD2	0	genome.wustl.edu	37	1	34182101	34182101	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	1	34182101	34182101	C	T	SNP	CSMD2	ENST00000373381	human	ensembl	74_37	-1	known	missense	c.3002	p.G1001D	1.000	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD2	HGNC	ENSG00000121904				39	0	0	14	3	17.6471
DIO1	0	genome.wustl.edu	37	1	54360179	54360179	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	1	54360179	54360179	G	A	SNP	DIO1	ENST00000388876	human	ensembl	74_37	+1	known	missense	c.296	p.R99H	0.001	pfam_Iodothyronine_deiodinase	pfam_Iodothyronine_deiodinase	-	no_errors	DIO1	HGNC	ENSG00000211452				42	0	0	34	4	10.5263
GNG12	0	genome.wustl.edu	37	1	68171254	68171254	+	Silent	SNP	C	C	T			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	1	68171254	68171254	C	T	SNP	GNG12	ENST00000370982	human	ensembl	74_37	-1	known	silent	c.99	p.S33	0.988	pfam_G-protein_gamma-like_dom,superfamily_G-protein_gamma-like_dom,smart_G-protein_gamma-like_dom,pfscan_G-protein_gamma-like_dom,prints_Gprotein-gamma	pfam_G-protein_gamma-like_dom,superfamily_G-protein_gamma-like_dom,smart_G-protein_gamma-like_dom,pfscan_G-protein_gamma-like_dom,prints_Gprotein-gamma	-	no_errors	GNG12	HGNC	ENSG00000172380				63	0	0	39	16	29.0909
LPPR4	0	genome.wustl.edu	37	1	99772187	99772187	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	1	99772187	99772187	C	T	SNP	LPPR4	ENST00000370185	human	ensembl	74_37	+1	known	missense	c.1913	p.S638F	1.000	NULL	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	-	no_errors	LPPR4	Uniprot_gn	ENSG00000117600				51	0	0	40	10	20
CACNB2	0	genome.wustl.edu	37	10	18827202	18827202	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	10	18827202	18827202	C	T	SNP	CACNB2	ENST00000324631	human	ensembl	74_37	+1	known	missense	c.1396	p.P466S	1.000	NULL	pfam_GK/Ca_channel_bsu,pfam_VDCC_L_bsu,superfamily_P-loop_NTPase,superfamily_SH3_domain,smart_SH3_domain,smart_GK/Ca_channel_bsu,pfscan_SH3_domain,prints_VDCC_L_bsu,prints_VDCC_L_b2su	-	no_errors	CACNB2	HGNC	ENSG00000165995				223	0	0	262	28	9.65517
NEBL	0	genome.wustl.edu	37	10	21461327	21461327	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	10	21461327	21461327	T	A	SNP	NEBL	ENST00000417816	human	ensembl	74_37	-1	known	missense	c.149	p.K50M	1.000	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Nebulin_35r-motif,pfam_Znf_LIM,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Znf_LIM,smart_Nebulin_35r-motif,smart_SH3_domain,pfscan_Znf_LIM,pfscan_Nebulin_35r-motif,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	NEBL	HGNC	ENSG00000078114				56	0	0	69	8	10.3896
DIP2C	0	genome.wustl.edu	37	10	402365	402365	+	Splice_Site	SNP	C	C	A			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	10	402365	402365	C	A	SNP	DIP2C	ENST00000280886	human	ensembl	74_37	-1	known	splice_site	c.2985+1	e24+1	1.000	-	-	-	no_errors	DIP2C	HGNC	ENSG00000151240				112	0	0	119	8	6.29921
NPY4R	0	genome.wustl.edu	37	10	47087071	47087071	+	Silent	SNP	G	G	A			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	10	47087071	47087071	G	A	SNP	NPY4R	ENST00000374312	human	ensembl	74_37	+1	known	silent	c.288	p.P96	0.025	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_NPY4_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	NPY4R	HGNC	ENSG00000204174				186	0	0	161	14	8
NET1	0	genome.wustl.edu	37	10	5494816	5494816	+	RNA	SNP	T	T	C			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	10	5494816	5494816	T	C	SNP	NET1	ENST00000486354	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	NET1	HGNC	ENSG00000173848				103	0	0	121	16	11.6788
COL13A1	0	genome.wustl.edu	37	10	71684726	71684726	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	10	71684726	71684726	G	A	SNP	COL13A1	ENST00000356340	human	ensembl	74_37	+1	known	missense	c.1259	p.R420H	0.537	pfam_Collagen	pfam_Collagen	-	no_errors	COL13A1	HGNC	ENSG00000197467				15	0	0	4	4	50
ECD	0	genome.wustl.edu	37	10	74906052	74906052	+	Nonsense_Mutation	SNP	G	G	C			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	10	74906052	74906052	G	C	SNP	ECD	ENST00000430082	human	ensembl	74_37	-1	known	nonsense	c.1109	p.S370*	1.000	pfam_SGT1	pfam_SGT1	-	no_errors	ECD	HGNC	ENSG00000122882				52	0	0	32	9	21.9512
MSS51	0	genome.wustl.edu	37	10	75185821	75185821	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	10	75185821	75185821	C	T	SNP	MSS51	ENST00000299432	human	ensembl	74_37	-1	known	missense	c.817	p.V273M	1.000	NULL	pfam_Znf_MYND,pfscan_Znf_MYND	-	no_errors	MSS51	HGNC	ENSG00000166343				63	0	0	52	13	20
DYNC2H1	0	genome.wustl.edu	37	11	103027275	103027275	+	Silent	SNP	G	G	A			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	11	103027275	103027275	G	A	SNP	DYNC2H1	ENST00000398093	human	ensembl	74_37	+1	known	silent	c.3903	p.Q1301	1.000	pfam_Dynein_heavy_dom-2	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DYNC2H1	HGNC	ENSG00000187240				129	0	0	130	10	7.14286
APOA4	0	genome.wustl.edu	37	11	116691969	116691969	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	11	116691969	116691969	G	C	SNP	APOA4	ENST00000357780	human	ensembl	74_37	-1	known	missense	c.805	p.P269A	0.799	pfam_ApoA1_A4_E	pfam_ApoA1_A4_E	-	no_errors	APOA4	HGNC	ENSG00000110244				94	0	0	80	5	5.88235
ETS1	0	genome.wustl.edu	37	11	128359355	128359355	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	11	128359355	128359355	C	A	SNP	ETS1	ENST00000392668	human	ensembl	74_37	-1	known	missense	c.365	p.R122L	1.000	pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,pirsf_Transform_prot_C-ets	pfam_Ets_dom,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets_dom,pirsf_Transform_prot_C-ets,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	ETS1	HGNC	ENSG00000134954				139	0	0	114	18	13.6364
TP53AIP1	0	genome.wustl.edu	37	11	128807499	128807499	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	11	128807499	128807499	C	G	SNP	TP53AIP1	ENST00000527504	human	ensembl	74_37	-1	known	missense	c.215	p.G72A	0.000	NULL	NULL	-	no_errors	TP53AIP1	HGNC	ENSG00000120471				73	0	0	56	8	12.5
CCDC73	0	genome.wustl.edu	37	11	32635062	32635062	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	11	32635062	32635062	C	G	SNP	CCDC73	ENST00000335185	human	ensembl	74_37	-1	known	missense	c.2802	p.E934D	0.607	NULL	NULL	-	no_errors	CCDC73	HGNC	ENSG00000186714				156	0	0	95	26	21.4876
OR5M8	0	genome.wustl.edu	37	11	56258070	56258070	+	Silent	SNP	G	G	A			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	11	56258070	56258070	G	A	SNP	OR5M8	ENST00000327216	human	ensembl	74_37	-1	known	silent	c.777	p.L259	0.002	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5M8	HGNC	ENSG00000181371				95	0	0	70	16	18.6047
RTN4RL2	0	genome.wustl.edu	37	11	57244117	57244117	+	Silent	SNP	C	C	T			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	11	57244117	57244117	C	T	SNP	RTN4RL2	ENST00000335099	human	ensembl	74_37	+1	known	silent	c.996	p.Y332	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	RTN4RL2	HGNC	ENSG00000186907				18	0	0	8	4	33.3333
PHRF1	0	genome.wustl.edu	37	11	598413	598413	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	11	598413	598413	C	T	SNP	PHRF1	ENST00000264555	human	ensembl	74_37	+1	known	missense	c.935	p.A312V	1.000	NULL	pfam_Znf_PHD-finger,pfam_Znf_C3HC4_RING-type,superfamily_Znf_FYVE_PHD,smart_Znf_RING,smart_Znf_PHD,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	PHRF1	HGNC	ENSG00000070047				32	0	0	37	6	13.9535
PHRF1	0	genome.wustl.edu	37	11	607264	607264	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	11	607264	607264	A	G	SNP	PHRF1	ENST00000264555	human	ensembl	74_37	+1	known	missense	c.1808	p.D603G	0.001	NULL	pfam_Znf_PHD-finger,pfam_Znf_C3HC4_RING-type,superfamily_Znf_FYVE_PHD,smart_Znf_RING,smart_Znf_PHD,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	PHRF1	HGNC	ENSG00000070047				126	0	0	77	31	28.7037
RTN3	0	genome.wustl.edu	37	11	63449014	63449014	+	RNA	SNP	C	C	T			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	11	63449014	63449014	C	T	SNP	RTN3	ENST00000338850	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RTN3	HGNC	ENSG00000133318				16	0	0	16	5	23.8095
SF3B2	0	genome.wustl.edu	37	11	65827302	65827302	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	11	65827302	65827302	A	T	SNP	SF3B2	ENST00000322535	human	ensembl	74_37	+1	known	missense	c.1451	p.D484V	1.000	pfam_DUF382	pfam_DUF382,pfam_PSP,pfam_SAP_dom,smart_SAP_dom,smart_PSP,pfscan_SAP_dom	-	no_errors	SF3B2	HGNC	ENSG00000087365				82	0	0	58	11	15.942
TCIRG1	0	genome.wustl.edu	37	11	67816583	67816583	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	11	67816583	67816583	C	T	SNP	TCIRG1	ENST00000265686	human	ensembl	74_37	+1	known	missense	c.1709	p.T570M	0.930	pfam_V-ATPase_116kDa_su	pfam_V-ATPase_116kDa_su	-	no_errors	TCIRG1	HGNC	ENSG00000110719				145	0	0	107	23	17.6923
RBMXL2	0	genome.wustl.edu	37	11	7111351	7111351	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	11	7111351	7111351	G	A	SNP	RBMXL2	ENST00000306904	human	ensembl	74_37	+1	known	missense	c.1000	p.D334N	1.000	NULL	pfam_RRM_dom,pfam_RBM1CTR,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBMXL2	HGNC	ENSG00000170748				33	0	0	28	3	9.67742
SCUBE2	0	genome.wustl.edu	37	11	9048919	9048919	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	11	9048919	9048919	C	T	SNP	SCUBE2	ENST00000457346	human	ensembl	74_37	-1	known	missense	c.2693	p.R898Q	1.000	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_CUB_dom,superfamily_CUB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_CUB_dom,pfscan_CUB_dom,pfscan_EG-like_dom	-	no_errors	SCUBE2	HGNC	ENSG00000175356				24	0	0	18	6	25
UTP20	0	genome.wustl.edu	37	12	101684666	101684666	+	Silent	SNP	A	A	G			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	12	101684666	101684666	A	G	SNP	UTP20	ENST00000261637	human	ensembl	74_37	+1	known	silent	c.891	p.Q297	0.994	superfamily_ARM-type_fold	pfam_DRIM,superfamily_ARM-type_fold	-	no_errors	UTP20	HGNC	ENSG00000120800				72	0	0	55	9	14.0625
TRPV4	0	genome.wustl.edu	37	12	110232195	110232195	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	12	110232195	110232195	G	T	SNP	TRPV4	ENST00000261740	human	ensembl	74_37	-1	known	missense	c.1430	p.S477Y	1.000	tigrfam_TRP_channel	pfam_Ankyrin_rpt,pfam_Ion_trans_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_TRPV1-4_channel,prints_TRPV4_channel,tigrfam_TRP_channel	-	no_errors	TRPV4	HGNC	ENSG00000111199				114	0	0	97	18	15.6522
LRTM2	0	genome.wustl.edu	37	12	1943618	1943618	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	12	1943618	1943618	G	C	SNP	LRTM2	ENST00000299194	human	ensembl	74_37	+1	known	missense	c.844	p.G282R	0.642	NULL	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	LRTM2	HGNC	ENSG00000166159				40	0	0	37	13	26
OVCH1	0	genome.wustl.edu	37	12	29596410	29596410	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	12	29596410	29596410	G	C	SNP	OVCH1	ENST00000318184	human	ensembl	74_37	-1	known	missense	c.3041	p.P1014R	0.036	superfamily_CUB_dom	pfam_Peptidase_S1,pfam_CUB_dom,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,superfamily_CUB_dom,smart_Peptidase_S1,smart_CUB_dom,pfscan_CUB_dom,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	OVCH1	HGNC	ENSG00000187950				142	0	0	157	11	6.54762
WNT1	0	genome.wustl.edu	37	12	49373448	49373448	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	12	49373448	49373448	G	T	SNP	WNT1	ENST00000293549	human	ensembl	74_37	+1	known	missense	c.302	p.R101L	1.000	pfam_Wnt,smart_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt1	-	no_errors	WNT1	HGNC	ENSG00000125084				63	0	0	35	10	22.2222
KRT83	0	genome.wustl.edu	37	12	52714852	52714852	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	12	52714852	52714852	C	T	SNP	KRT83	ENST00000293670	human	ensembl	74_37	-1	known	missense	c.268	p.E90K	1.000	NULL	pfam_IF,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT83	HGNC	ENSG00000170523				160	0	0	110	37	25.1701
NEUROD4	0	genome.wustl.edu	37	12	55420636	55420636	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	12	55420636	55420636	C	A	SNP	NEUROD4	ENST00000242994	human	ensembl	74_37	+1	known	missense	c.413	p.A138D	1.000	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pirsf_TF_bHLH_NeuroD,pfscan_bHLH_dom	pfam_Neurogenic_DUF,pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pirsf_TF_bHLH_NeuroD,pfscan_bHLH_dom	-	no_errors	NEUROD4	HGNC	ENSG00000123307				102	0	0	73	14	16.092
ARHGEF25	0	genome.wustl.edu	37	12	58009044	58009044	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	12	58009044	58009044	G	T	SNP	ARHGEF25	ENST00000333972	human	ensembl	74_37	+1	known	missense	c.1102	p.V368L	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF25	HGNC	ENSG00000240771				45	0	0	32	4	11.1111
NAV3	0	genome.wustl.edu	37	12	78334097	78334097	+	Splice_Site	SNP	A	A	G			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	12	78334097	78334097	A	G	SNP	NAV3	ENST00000397909	human	ensembl	74_37	+1	known	splice_site	c.244-2	e2-2	1.000	-	-	-	no_errors	NAV3	HGNC	ENSG00000067798				194	0	0	218	12	5.21739
NAV3	0	genome.wustl.edu	37	12	78573323	78573323	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	12	78573323	78573323	C	A	SNP	NAV3	ENST00000397909	human	ensembl	74_37	+1	known	missense	c.5378	p.T1793K	1.000	NULL	pfam_CH-domain,pfam_ATPase_AAA_core,superfamily_CH-domain,superfamily_P-loop_NTPase,smart_CH-domain,smart_AAA+_ATPase,pfscan_CH-domain	-	no_errors	NAV3	HGNC	ENSG00000067798				81	0	0	75	7	8.53659
SLC2A3	0	genome.wustl.edu	37	12	8074090	8074090	+	Silent	SNP	G	G	A			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	12	8074090	8074090	G	A	SNP	SLC2A3	ENST00000075120	human	ensembl	74_37	-1	known	silent	c.1410	p.H470	0.000	NULL	pfam_Sub_transporter,pfam_MFS,pfam_Folate_carrier,superfamily_MFS_dom_general_subst_transpt,prints_Sugar/inositol_transpt,prints_Glc_transpt_3,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	-	no_errors	SLC2A3	HGNC	ENSG00000059804				266	0	0	188	13	6.46766
SLC6A15	0	genome.wustl.edu	37	12	85257370	85257370	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	12	85257370	85257370	C	A	SNP	SLC6A15	ENST00000266682	human	ensembl	74_37	-1	known	missense	c.1666	p.D556Y	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_orphan	-	no_errors	SLC6A15	HGNC	ENSG00000072041				80	0	0	77	7	8.33333
ANKRD10	0	genome.wustl.edu	37	13	111563089	111563089	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	13	111563089	111563089	G	A	SNP	ANKRD10	ENST00000267339	human	ensembl	74_37	-1	known	missense	c.239	p.A80V	0.998	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD10	HGNC	ENSG00000088448				43	0	0	47	6	11.3208
TPTE2	0	genome.wustl.edu	37	13	20025355	20025355	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	13	20025355	20025355	C	T	SNP	TPTE2	ENST00000382977	human	ensembl	74_37	-1	known	missense	c.752	p.R251Q	0.984	pfscan_Phosphatase_tensin-typ	pfam_Tensin_phosphatase_C2-dom,pfam_Ion_trans_dom,pfam_Dual-sp_phosphatase_cat-dom,superfamily_C2_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TPTE2	HGNC	ENSG00000132958				67	0	0	52	18	25.7143
PCDH17	0	genome.wustl.edu	37	13	58207577	58207577	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	13	58207577	58207577	G	C	SNP	PCDH17	ENST00000377918	human	ensembl	74_37	+1	known	missense	c.897	p.K299N	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH17	HGNC	ENSG00000118946				53	0	0	57	3	5
DOCK9	0	genome.wustl.edu	37	13	99532820	99532820	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	13	99532820	99532820	G	T	SNP	DOCK9	ENST00000339416	human	ensembl	74_37	-1	known	missense	c.2855	p.T952N	1.000	superfamily_ARM-type_fold	pfam_DOCK_C,pfam_DOCK_C/D_N,pfam_Pleckstrin_homology,superfamily_ARM-type_fold,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK9	HGNC	ENSG00000088387				42	0	0	45	4	8.16327
AKAP6	0	genome.wustl.edu	37	14	33290805	33290805	+	Silent	SNP	C	C	T			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	14	33290805	33290805	C	T	SNP	AKAP6	ENST00000280979	human	ensembl	74_37	+1	known	silent	c.3786	p.D1262	0.901	NULL	smart_Spectrin/alpha-actinin	-	no_errors	AKAP6	HGNC	ENSG00000151320				49	0	0	45	9	16.6667
SOS2	0	genome.wustl.edu	37	14	50587046	50587046	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	14	50587046	50587046	G	A	SNP	SOS2	ENST00000216373	human	ensembl	74_37	-1	known	missense	c.3436	p.P1146S	1.000	NULL	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Histone_core_D,superfamily_Ras_GEF_dom,superfamily_Histone-fold,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_Pleckstrin_homology,pfscan_DH-domain,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	SOS2	HGNC	ENSG00000100485				69	0	0	55	6	9.83607
NPAP1	0	genome.wustl.edu	37	15	24921098	24921098	+	Silent	SNP	G	G	A			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	15	24921098	24921098	G	A	SNP	NPAP1	ENST00000329468	human	ensembl	74_37	+1	known	silent	c.84	p.L28	0.000	NULL	NULL	-	no_errors	NPAP1	HGNC	ENSG00000185823				32	0	0	9	6	40
MEGF11	0	genome.wustl.edu	37	15	66191074	66191074	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	15	66191074	66191074	T	C	SNP	MEGF11	ENST00000409699	human	ensembl	74_37	-1	known	missense	c.2966	p.Y989C	1.000	NULL	pfam_EGF_laminin,pfam_EGF_extracell,smart_EG-like_dom,smart_EGF_laminin,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_EMI_domain	-	no_errors	MEGF11	HGNC	ENSG00000157890				111	0	0	75	15	16.6667
NR2F2	0	genome.wustl.edu	37	15	96877403	96877403	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	15	96877403	96877403	T	C	SNP	NR2F2	ENST00000394166	human	ensembl	74_37	+1	known	missense	c.541	p.Y181H	1.000	superfamily_Nucl_hormone_rcpt_ligand-bd,prints_COUP_TF	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_COUP_TF,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Retinoid-X_rcpt/HNF4	-	no_errors	NR2F2	HGNC	ENSG00000185551				230	0	0	156	25	13.8122
CLCN7	0	genome.wustl.edu	37	16	1505133	1505133	+	Splice_Site	SNP	A	A	G			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	16	1505133	1505133	A	G	SNP	CLCN7	ENST00000382745	human	ensembl	74_37	-1	known	splice_site	c.1098+2	e12+2	0.999	-	-	-	no_errors	CLCN7	HGNC	ENSG00000103249				100	0	0	86	27	23.8938
CD2BP2	0	genome.wustl.edu	37	16	30364821	30364821	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	16	30364821	30364821	C	T	SNP	CD2BP2	ENST00000305596	human	ensembl	74_37	-1	known	missense	c.676	p.A226T	1.000	NULL	pfam_GYF,superfamily_GYF,smart_GYF,pfscan_GYF	-	no_errors	CD2BP2	HGNC	ENSG00000169217				63	0	0	66	10	13.1579
CNTNAP4	0	genome.wustl.edu	37	16	76569621	76569621	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	16	76569621	76569621	C	T	SNP	CNTNAP4	ENST00000307431	human	ensembl	74_37	+1	known	missense	c.2932	p.P978S	0.993	superfamily_ConA-like_lec_gl_sf,smart_EG-like_dom,pfscan_EG-like_dom	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP4	HGNC	ENSG00000152910				53	0	0	37	14	27.451
SGSM2	0	genome.wustl.edu	37	17	2266799	2266799	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	17	2266799	2266799	G	A	SNP	SGSM2	ENST00000268989	human	ensembl	74_37	+1	known	missense	c.713	p.R238K	0.999	NULL	pfam_Run,pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Run,smart_Rab-GTPase-TBC_dom,pfscan_Run,pfscan_Rab-GTPase-TBC_dom	-	no_errors	SGSM2	HGNC	ENSG00000141258				21	0	0	31	3	8.82353
SLC13A2	0	genome.wustl.edu	37	17	26816245	26816245	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	17	26816245	26816245	C	T	SNP	SLC13A2	ENST00000444914	human	ensembl	74_37	+1	known	missense	c.116	p.A39V	0.970	pfam_Na/sul_symport	pfam_Na/sul_symport,pfam_Cit_transptr-like_dom	-	no_errors	SLC13A2	HGNC	ENSG00000007216				81	0	0	87	8	8.42105
ACACA	0	genome.wustl.edu	37	17	35454770	35454770	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	17	35454770	35454770	T	C	SNP	ACACA	ENST00000353139	human	ensembl	74_37	-1	known	missense	c.6715	p.I2239V	1.000	pfam_Carboxyl_trans	pfam_AcCoA_COase_cen,pfam_Carboxyl_trans,pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,pfam_Dala_Dala_lig_C,pfam_ATP-grasp_carboxylate-amine,superfamily_PreATP-grasp_dom,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_COA_CT_N,pfscan_COA_CT_C,pfscan_Biotin_lipoyl	-	no_errors	ACACA	HGNC	ENSG00000132142				99	0	0	165	11	6.25
KRT33B	0	genome.wustl.edu	37	17	39525885	39525885	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	17	39525885	39525885	T	A	SNP	KRT33B	ENST00000251646	human	ensembl	74_37	-1	known	missense	c.118	p.N40Y	0.999	NULL	pfam_IF,prints_Keratin_I	-	no_errors	KRT33B	HGNC	ENSG00000131738				100	0	0	275	16	5.49828
PLCD3	0	genome.wustl.edu	37	17	43197709	43197709	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	17	43197709	43197709	C	T	SNP	PLCD3	ENST00000322765	human	ensembl	74_37	-1	known	missense	c.667	p.A223T	1.000	NULL	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_Pleckstrin_homology,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,pfscan_C2_dom,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCD3	HGNC	ENSG00000161714				43	0	0	24	7	22.5806
DDX5	0	genome.wustl.edu	37	17	62500356	62500356	+	Nonsense_Mutation	SNP	A	A	C			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	17	62500356	62500356	A	C	SNP	DDX5	ENST00000225792	human	ensembl	74_37	-1	known	nonsense	c.291	p.Y97*	0.997	pfscan_RNA_helicase_DEAD_Q_motif	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_P68HR,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX5	HGNC	ENSG00000108654				94	0	0	91	14	13.3333
TP53	0	genome.wustl.edu	37	17	7579368	7579368	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	17	7579368	7579368	A	C	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	missense	c.319	p.Y107D	0.906	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510				95	0	0	41	20	32.7869
SOCS3	0	genome.wustl.edu	37	17	76354533	76354533	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	17	76354533	76354533	C	A	SNP	SOCS3	ENST00000330871	human	ensembl	74_37	-1	known	missense	c.644	p.R215L	1.000	pfam_SOCS_C,smart_SOCS_C,pfscan_SOCS_C	pfam_SH2,pfam_SOCS_C,smart_SH2,smart_SOCS_C,pfscan_SOCS_C,pfscan_SH2	-	no_errors	SOCS3	HGNC	ENSG00000184557				63	0	0	45	11	19.6429
SOCS3	0	genome.wustl.edu	37	17	76354534	76354534	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	17	76354534	76354534	G	A	SNP	SOCS3	ENST00000330871	human	ensembl	74_37	-1	known	missense	c.643	p.R215W	1.000	pfam_SOCS_C,smart_SOCS_C,pfscan_SOCS_C	pfam_SH2,pfam_SOCS_C,smart_SH2,smart_SOCS_C,pfscan_SOCS_C,pfscan_SH2	-	no_errors	SOCS3	HGNC	ENSG00000184557				63	0	0	46	11	19.2982
USP36	0	genome.wustl.edu	37	17	76803161	76803161	+	Silent	SNP	T	T	C			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	17	76803161	76803161	T	C	SNP	USP36	ENST00000312010	human	ensembl	74_37	-1	known	silent	c.1965	p.P655	0.000	NULL	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP36	HGNC	ENSG00000055483				80	0	0	50	10	16.6667
CANT1	0	genome.wustl.edu	37	17	76989930	76989930	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	17	76989930	76989930	C	G	SNP	CANT1	ENST00000302345	human	ensembl	74_37	-1	known	missense	c.908	p.S303T	1.000	pfam_Apyrase,superfamily_Apyrase	pfam_Apyrase,superfamily_Apyrase	-	no_errors	CANT1	HGNC	ENSG00000171302				23	0	0	13	5	27.7778
MYH10	0	genome.wustl.edu	37	17	8415782	8415782	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	17	8415782	8415782	T	G	SNP	MYH10	ENST00000396239	human	ensembl	74_37	-1	known	missense	c.2909	p.Q970P	1.000	NULL	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_HR1_rho-bd,superfamily_UBA-like,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH10	HGNC	ENSG00000133026				64	0	0	49	4	7.54717
CCDC178	0	genome.wustl.edu	37	18	30847250	30847250	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	18	30847250	30847250	C	A	SNP	CCDC178	ENST00000406524	human	ensembl	74_37	-1	known	missense	c.1188	p.L396F	0.008	NULL	NULL	-	no_errors	CCDC178	HGNC	ENSG00000166960				96	0	0	127	19	13.0137
C18orf54	0	genome.wustl.edu	37	18	51904563	51904563	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	18	51904563	51904563	C	T	SNP	C18orf54	ENST00000300091	human	ensembl	74_37	+1	known	missense	c.1066	p.R356C	1.000	NULL	NULL	-	no_errors	C18orf54	HGNC	ENSG00000166845				38	0	0	32	13	28.8889
WIZ	0	genome.wustl.edu	37	19	15538061	15538061	+	Silent	SNP	G	G	A			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	19	15538061	15538061	G	A	SNP	WIZ	ENST00000389282	human	ensembl	74_37	-1	known	silent	c.3384	p.P1128	0.179	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	WIZ	HGNC	ENSG00000011451				81	0	0	80	7	8.04598
PIK3R2	0	genome.wustl.edu	37	19	18273284	18273284	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	19	18273284	18273284	C	G	SNP	PIK3R2	ENST00000222254	human	ensembl	74_37	+1	known	missense	c.1077	p.S359R	1.000	pfam_SH2,smart_SH2,pfscan_SH2	pfam_SH2,pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,smart_SH3_domain,smart_RhoGAP_dom,smart_SH2,pfscan_SH2,pfscan_SH3_domain,pfscan_RhoGAP_dom,prints_PI3kinase_P85,prints_SH2	-	no_errors	PIK3R2	HGNC	ENSG00000105647				45	0	0	42	3	6.66667
CLIP3	0	genome.wustl.edu	37	19	36515332	36515332	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	19	36515332	36515332	C	T	SNP	CLIP3	ENST00000360535	human	ensembl	74_37	-1	known	missense	c.884	p.R295H	1.000	superfamily_CAP-Gly_domain	pfam_CAP-Gly_domain,pfam_Ankyrin_rpt,superfamily_CAP-Gly_domain,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_CAP-Gly_domain	-	no_errors	CLIP3	HGNC	ENSG00000105270				66	0	0	49	7	12.5
KCNK6	0	genome.wustl.edu	37	19	38817329	38817329	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	19	38817329	38817329	C	T	SNP	KCNK6	ENST00000263372	human	ensembl	74_37	+1	known	missense	c.419	p.A140V	0.428	pfam_2pore_dom_K_chnl_dom,pirsf_2pore_dom_K_chnl_TASK,prints_2pore_dom_K_chnl_TWIK,prints_2pore_dom_K_chnl_TWIK1	pfam_2pore_dom_K_chnl_dom,pirsf_2pore_dom_K_chnl_TASK,prints_2pore_dom_K_chnl_TWIK2,prints_2pore_dom_K_chnl_TWIK,prints_2pore_dom_K_chnl,prints_2pore_dom_K_chnl_TWIK1	-	no_errors	KCNK6	HGNC	ENSG00000099337				87	0	0	107	6	5.30973
SPTBN4	0	genome.wustl.edu	37	19	41077990	41077990	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	19	41077990	41077990	G	T	SNP	SPTBN4	ENST00000352632	human	ensembl	74_37	+1	known	missense	c.7385	p.G2462V	1.000	pirsf_Spectrin_bsu,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTBN4	HGNC	ENSG00000160460				300	0	0	324	47	12.6685
GPR32	0	genome.wustl.edu	37	19	51274341	51274341	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	19	51274341	51274341	G	C	SNP	GPR32	ENST00000270590	human	ensembl	74_37	+1	known	missense	c.484	p.A162P	0.878	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Formyl_pep_rcpt	-	no_errors	GPR32	HGNC	ENSG00000142511				105	0	0	88	22	20
ZNF175	0	genome.wustl.edu	37	19	52091638	52091638	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	19	52091638	52091638	A	G	SNP	ZNF175	ENST00000262259	human	ensembl	74_37	+1	known	missense	c.2054	p.N685S	0.001	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF175	HGNC	ENSG00000105497				51	0	0	46	7	13.2075
FBN3	0	genome.wustl.edu	37	19	8140221	8140221	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	19	8140221	8140221	G	A	SNP	FBN3	ENST00000270509	human	ensembl	74_37	-1	known	missense	c.7528	p.R2510C	0.994	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pirsf_FBN,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd_dom,pfam_TB_dom,pfam_EG-like_dom,superfamily_TB_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pirsf_FBN,pfscan_EG-like_dom	-	no_errors	FBN3	HGNC	ENSG00000142449				55	0	0	37	6	13.9535
IL1RL2	0	genome.wustl.edu	37	2	102842401	102842401	+	Silent	SNP	G	G	A			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	2	102842401	102842401	G	A	SNP	IL1RL2	ENST00000264257	human	ensembl	74_37	+1	known	silent	c.1035	p.L345	0.004	prints_IL-1_rcpt_I-typ	pfam_TIR_dom,superfamily_TIR_dom,smart_Ig_sub,smart_TIR_dom,pfscan_TIR_dom,pfscan_Ig-like_dom,prints_IL-1_rcpt_I/II-typ,prints_IL-1_rcpt_I-typ	-	no_errors	IL1RL2	HGNC	ENSG00000115598				44	0	0	45	4	8.16327
LRP1B	0	genome.wustl.edu	37	2	141665568	141665568	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	2	141665568	141665568	C	T	SNP	LRP1B	ENST00000389484	human	ensembl	74_37	-1	known	missense	c.3398	p.S1133N	0.998	smart_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702				91	0	0	80	6	6.97674
TPO	0	genome.wustl.edu	37	2	1500379	1500379	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	2	1500379	1500379	G	T	SNP	TPO	ENST00000329066	human	ensembl	74_37	+1	known	missense	c.2228	p.G743V	0.994	superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Haem_peroxidase_animal,pfam_EGF-like_Ca-bd_dom,superfamily_Haem_peroxidase,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Sushi_SCR_CCP,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	-	no_errors	TPO	HGNC	ENSG00000115705				168	0	0	147	13	8.125
APOB	0	genome.wustl.edu	37	2	21238012	21238012	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	2	21238012	21238012	C	G	SNP	APOB	ENST00000233242	human	ensembl	74_37	-1	known	missense	c.3629	p.R1210T	0.000	NULL	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674				144	0	0	144	8	5.26316
TNS1	0	genome.wustl.edu	37	2	218747129	218747129	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	2	218747129	218747129	G	A	SNP	TNS1	ENST00000171887	human	ensembl	74_37	-1	known	nonsense	c.877	p.R293*	1.000	pfam_Tensin_phosphatase_C2-dom,superfamily_C2_dom,pfscan_Tensin_phosphatase_C2-dom	pfam_PTB,pfam_Tensin_phosphatase_C2-dom,pfam_SH2,superfamily_C2_dom,smart_Tyr_Pase_cat,smart_SH2,smart_PTB/PI_dom,pfscan_SH2,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TNS1	HGNC	ENSG00000079308				77	0	0	67	8	10.6667
BIRC6	0	genome.wustl.edu	37	2	32640080	32640080	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	2	32640080	32640080	C	A	SNP	BIRC6	ENST00000421745	human	ensembl	74_37	+1	known	missense	c.1721	p.T574K	1.000	NULL	pfam_DUF3643,pfam_UBQ-conjugat_E2,pfam_BIR,pfam_UEV_N,superfamily_UBQ-conjugating_enzyme/RWD,superfamily_Galactose-bd-like,superfamily_WD40_repeat_dom,smart_BIR,pfscan_BIR,pfscan_UBQ-conjugat_E2	-	no_errors	BIRC6	HGNC	ENSG00000115760				38	0	0	45	5	10
LGALSL	0	genome.wustl.edu	37	2	64685502	64685502	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	2	64685502	64685502	G	A	SNP	LGALSL	ENST00000409537	human	ensembl	74_37	+1	putative	missense	c.281	p.R94H	0.132	NULL	superfamily_ConA-like_lec_gl_sf	-	no_errors	LGALSL	HGNC	ENSG00000119862				191	0	0	186	16	7.92079
GFPT1	0	genome.wustl.edu	37	2	69569333	69569333	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	2	69569333	69569333	C	T	SNP	GFPT1	ENST00000357308	human	ensembl	74_37	-1	known	missense	c.1154	p.R385Q	1.000	pfam_SIS,tigrfam_GlmS_trans	pfam_SIS,pfam_GATase_dom,tigrfam_GlmS_trans	-	no_errors	GFPT1	HGNC	ENSG00000198380				301	0	0	319	32	9.11681
SPR	0	genome.wustl.edu	37	2	73118535	73118535	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	2	73118535	73118535	C	T	SNP	SPR	ENST00000234454	human	ensembl	74_37	+1	known	nonsense	c.655	p.R219*	0.012	tigrfam_Sepiapterin_red	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH,tigrfam_Sepiapterin_red	-	no_errors	SPR	HGNC	ENSG00000116096				72	0	0	75	19	20.2128
MOGS	0	genome.wustl.edu	37	2	74689430	74689430	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	2	74689430	74689430	C	T	SNP	MOGS	ENST00000233616	human	ensembl	74_37	-1	known	missense	c.1486	p.A496T	1.000	pfam_Glycoside_hydrolase_63,superfamily_6-hairpin_glycosidase-like	pfam_Glycoside_hydrolase_63,superfamily_6-hairpin_glycosidase-like	-	no_errors	MOGS	HGNC	ENSG00000115275				80	0	0	74	14	15.9091
TEKT4	0	genome.wustl.edu	37	2	95537520	95537520	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	2	95537520	95537520	C	T	SNP	TEKT4	ENST00000295201	human	ensembl	74_37	+1	known	missense	c.196	p.R66W	0.995	pfam_Tektin	pfam_Tektin,prints_Tektin	-	no_errors	TEKT4	HGNC	ENSG00000163060				46	0	0	49	20	28.9855
FAM182B	0	genome.wustl.edu	37	20	25848606	25848606	+	RNA	SNP	G	G	A			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	20	25848606	25848606	G	A	SNP	FAM182B	ENST00000424021	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.028	-	-	-	no_errors	FAM182B	HGNC	ENSG00000175170				9	0	0	12	4	25
AVP	0	genome.wustl.edu	37	20	3065247	3065247	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	20	3065247	3065247	C	T	SNP	AVP	ENST00000380293	human	ensembl	74_37	-1	known	missense	c.74	p.C25Y	1.000	pirsf_Neurhyp_horm,prints_Neurhyp_horm	pfam_Neurhyp_horm,superfamily_Neurhyp_horm,smart_Neurhyp_horm,pirsf_Neurhyp_horm,prints_Neurhyp_horm	-	no_errors	AVP	HGNC	ENSG00000101200				175	0	0	254	21	7.63636
AAR2	0	genome.wustl.edu	37	20	34832803	34832803	+	Silent	SNP	C	C	T			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	20	34832803	34832803	C	T	SNP	AAR2	ENST00000320849	human	ensembl	74_37	+1	known	silent	c.942	p.F314	0.995	pfam_AAR2	pfam_AAR2	-	no_errors	AAR2	HGNC	ENSG00000131043				97	0	0	91	5	5.20833
TPTE	0	genome.wustl.edu	37	21	10907025	10907025	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	21	10907025	10907025	T	G	SNP	TPTE	ENST00000361285	human	ensembl	74_37	-1	known	missense	c.1536	p.K512N	0.962	pfam_Tensin_phosphatase_C2-dom,superfamily_C2_dom,pfscan_Tensin_phosphatase_C2-dom	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Ion_trans_dom,superfamily_C2_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TPTE	HGNC	ENSG00000166157				54	0	0	48	8	14.2857
ADAMTS1	0	genome.wustl.edu	37	21	28212246	28212246	+	Silent	SNP	G	G	C			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	21	28212246	28212246	G	C	SNP	ADAMTS1	ENST00000284984	human	ensembl	74_37	-1	known	silent	c.1800	p.G600	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Pept_M12B_ADAM-TS1,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS1	HGNC	ENSG00000154734				169	0	0	134	22	14.1026
AIRE	0	genome.wustl.edu	37	21	45710762	45710762	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	21	45710762	45710762	G	C	SNP	AIRE	ENST00000355347	human	ensembl	74_37	+1	known	missense	c.73	p.G25R	0.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	AIRE	HGNC	ENSG00000160224				147	0	0	93	11	10.5769
KIAA2018	0	genome.wustl.edu	37	3	113377235	113377235	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	3	113377235	113377235	G	C	SNP	KIAA2018	ENST00000316407	human	ensembl	74_37	-1	known	missense	c.3294	p.F1098L	1.000	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	KIAA2018	HGNC	ENSG00000176542				149	0	0	113	22	16.2963
RBP1	0	genome.wustl.edu	37	3	139236484	139236484	+	Silent	SNP	G	G	A			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	3	139236484	139236484	G	A	SNP	RBP1	ENST00000232219	human	ensembl	74_37	-1	known	silent	c.579	p.F193	1.000	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_Fatty_acid-bd	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_Fatty_acid-bd	-	no_errors	RBP1	HGNC	ENSG00000114115				170	0	0	129	32	19.8758
LINC00969	0	genome.wustl.edu	37	3	195400799	195400799	+	RNA	SNP	G	G	A			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	3	195400799	195400799	G	A	SNP	LINC00969	ENST00000414625	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.992	-	-	-	no_errors	LINC00969	HGNC	ENSG00000242086				44	0	0	47	7	12.963
TMPPE	0	genome.wustl.edu	37	3	33135129	33135129	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	3	33135129	33135129	G	A	SNP	TMPPE	ENST00000342462	human	ensembl	74_37	-1	known	missense	c.559	p.P187S	1.000	NULL	pfam_PEstase_dom	-	no_errors	TMPPE	HGNC	ENSG00000188167				55	0	0	31	10	24.3902
NBEAL2	0	genome.wustl.edu	37	3	47042669	47042669	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	3	47042669	47042669	G	C	SNP	NBEAL2	ENST00000450053	human	ensembl	74_37	+1	known	missense	c.4484	p.S1495T	1.000	NULL	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl_sf,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NBEAL2	HGNC	ENSG00000160796				32	0	0	23	8	25.8065
MAP4	0	genome.wustl.edu	37	3	47951317	47951317	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	3	47951317	47951317	C	T	SNP	MAP4	ENST00000264724	human	ensembl	74_37	-1	known	missense	c.415	p.E139K	0.723	NULL	pfam_MAP_tubulin-bd_rpt	-	no_errors	MAP4	HGNC	ENSG00000047849				137	0	0	105	16	13.2231
ARIH2	0	genome.wustl.edu	37	3	49006074	49006074	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	3	49006074	49006074	A	G	SNP	ARIH2	ENST00000356401	human	ensembl	74_37	+1	known	missense	c.646	p.R216G	1.000	pfam_Znf_C6HC,smart_Znf_C6HC	pfam_Znf_C6HC,smart_Znf_RING,smart_Znf_C6HC,pfscan_Znf_RING	-	no_errors	ARIH2	HGNC	ENSG00000177479				168	0	0	133	14	9.52381
CACNA1D	0	genome.wustl.edu	37	3	53778854	53778854	+	Silent	SNP	G	G	A			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	3	53778854	53778854	G	A	SNP	CACNA1D	ENST00000288139	human	ensembl	74_37	+1	known	silent	c.3066	p.K1022	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su,prints_LVDCC_a1dsu	-	no_errors	CACNA1D	HGNC	ENSG00000157388				72	0	0	43	10	18.8679
PDZRN3	0	genome.wustl.edu	37	3	73433107	73433107	+	Silent	SNP	G	G	A			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	3	73433107	73433107	G	A	SNP	PDZRN3	ENST00000263666	human	ensembl	74_37	-1	known	silent	c.2610	p.H870	0.986	NULL	pfam_PDZ,pfam_Znf_C3HC4_RING-type,superfamily_PDZ,superfamily_TRAF-like,smart_Znf_RING,smart_PDZ,pfscan_PDZ,pfscan_Znf_RING,pfscan_Znf_TRAF	-	no_errors	PDZRN3	HGNC	ENSG00000121440				89	0	0	57	8	12.3077
EPHA6	0	genome.wustl.edu	37	3	97356746	97356746	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	3	97356746	97356746	G	C	SNP	EPHA6	ENST00000389672	human	ensembl	74_37	+1	known	missense	c.2604	p.Q868H	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	EPHA6	HGNC	ENSG00000080224				193	0	0	149	14	8.58896
CENPE	0	genome.wustl.edu	37	4	104101522	104101522	+	Silent	SNP	G	G	A			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	4	104101522	104101522	G	A	SNP	CENPE	ENST00000265148	human	ensembl	74_37	-1	known	silent	c.1188	p.N396	0.990	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,superfamily_STAT_TF_coiled-coil,superfamily_Signal_recog_particl_SRP54_hlx,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	CENPE	HGNC	ENSG00000138778				136	0	0	89	8	8.24742
SYNPO2	0	genome.wustl.edu	37	4	119951305	119951305	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	4	119951305	119951305	G	T	SNP	SYNPO2	ENST00000307142	human	ensembl	74_37	+1	known	missense	c.1375	p.V459F	0.050	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SYNPO2	HGNC	ENSG00000172403				76	0	0	48	10	17.2414
PCDH10	0	genome.wustl.edu	37	4	134072365	134072365	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	4	134072365	134072365	A	C	SNP	PCDH10	ENST00000264360	human	ensembl	74_37	+1	known	missense	c.1070	p.E357A	1.000	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH10	HGNC	ENSG00000138650				110	0	0	80	6	6.97674
DCLK2	0	genome.wustl.edu	37	4	151170753	151170753	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	4	151170753	151170753	G	C	SNP	DCLK2	ENST00000302176	human	ensembl	74_37	+1	known	missense	c.2041	p.E681Q	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Doublecortin_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Doublecortin_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Doublecortin_dom,pfscan_Prot_kinase_dom	-	no_errors	DCLK2	HGNC	ENSG00000170390				109	0	0	94	7	6.93069
PPARGC1A	0	genome.wustl.edu	37	4	23886497	23886497	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	4	23886497	23886497	G	C	SNP	PPARGC1A	ENST00000264867	human	ensembl	74_37	-1	known	missense	c.112	p.L38V	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	PPARGC1A	HGNC	ENSG00000109819				45	0	0	42	5	10.6383
HGFAC	0	genome.wustl.edu	37	4	3446377	3446377	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	4	3446377	3446377	G	A	SNP	HGFAC	ENST00000382774	human	ensembl	74_37	+1	known	missense	c.758	p.G253E	0.991	pirsf_Coagulation_fac_XIIa/HGFA,pfam_EG-like_dom,smart_EG-like_dom,pfscan_EG-like_dom	pirsf_Coagulation_fac_XIIa/HGFA,pfam_Peptidase_S1,pfam_Kringle,pfam_FN_type2_col-bd,pfam_Fibronectin_type1,pfam_EG-like_dom,superfamily_Trypsin-like_Pept_dom,superfamily_Kringle-like,smart_FN_type2_col-bd,smart_EG-like_dom,smart_Fibronectin_type1,smart_Kringle,smart_Peptidase_S1,pfscan_EG-like_dom,pfscan_Fibronectin_type1,pfscan_FN_type2_col-bd,pfscan_Kringle,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	HGFAC	HGNC	ENSG00000109758				26	0	0	13	5	27.7778
C4orf19	0	genome.wustl.edu	37	4	37592414	37592414	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	4	37592414	37592414	T	G	SNP	C4orf19	ENST00000284437	human	ensembl	74_37	+1	known	missense	c.737	p.V246G	0.001	NULL	NULL	-	no_errors	C4orf19	HGNC	ENSG00000154274				74	0	0	58	12	17.1429
CDKL2	0	genome.wustl.edu	37	4	76539472	76539472	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	4	76539472	76539472	A	C	SNP	CDKL2	ENST00000429927	human	ensembl	74_37	-1	known	missense	c.330	p.I110M	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDKL2	HGNC	ENSG00000138769				60	0	0	35	4	10.2564
RASGEF1B	0	genome.wustl.edu	37	4	82369254	82369254	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	4	82369254	82369254	G	C	SNP	RASGEF1B	ENST00000264400	human	ensembl	74_37	-1	known	missense	c.623	p.T208R	0.999	pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGEF1B	HGNC	ENSG00000138670				178	0	0	125	18	12.5874
IDUA	0	genome.wustl.edu	37	4	995716	995716	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	4	995716	995716	G	A	SNP	IDUA	ENST00000453894	human	ensembl	74_37	+1	known	missense	c.698	p.R233H	0.000	NULL	pfam_Glyco_hydro_39,superfamily_Glycoside_hydrolase_SF,superfamily_Fibronectin_type3,prints_Glyco_hydro_39	-	no_errors	IDUA	HGNC	ENSG00000127415				14	0	0	0	2	100
SLCO4C1	0	genome.wustl.edu	37	5	101631703	101631703	+	Nonsense_Mutation	SNP	G	G	C			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	5	101631703	101631703	G	C	SNP	SLCO4C1	ENST00000310954	human	ensembl	74_37	-1	known	nonsense	c.264	p.Y88*	1.000	superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO4C1	HGNC	ENSG00000173930				68	0	0	58	7	10.7692
APC	0	genome.wustl.edu	37	5	112177901	112177901	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	5	112177901	112177901	C	T	SNP	APC	ENST00000257430	human	ensembl	74_37	+1	known	nonsense	c.6610	p.R2204*	0.999	NULL	pfam_APC_basic_dom,pfam_EB1-bd,pfam_APC_Cys-rich_rpt,pfam_Armadillo,pfam_APC_dom,pfam_SAMP,pfam_APC_15aa_rpt,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	APC	HGNC	ENSG00000134982				119	0	0	64	51	44.3478
PCDHA8	0	genome.wustl.edu	37	5	140222761	140222761	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	5	140222761	140222761	C	A	SNP	PCDHA8	ENST00000531613	human	ensembl	74_37	+1	known	missense	c.1855	p.R619S	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA8	HGNC	ENSG00000204962				66	0	0	48	26	35.1351
PCDHGB3	0	genome.wustl.edu	37	5	140751796	140751796	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	5	140751796	140751796	G	A	SNP	PCDHGB3	ENST00000576222	human	ensembl	74_37	+1	known	missense	c.1835	p.S612N	0.986	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB3	HGNC	ENSG00000262209				115	0	0	73	14	16.092
PCDHGC5	0	genome.wustl.edu	37	5	140870921	140870921	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	5	140870921	140870921	C	G	SNP	PCDHGC5	ENST00000252087	human	ensembl	74_37	+1	known	missense	c.2114	p.S705C	1.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGC5	HGNC	ENSG00000240764				267	1	0.373134	169	21	11.0526
FAT2	0	genome.wustl.edu	37	5	150914081	150914081	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	5	150914081	150914081	C	G	SNP	FAT2	ENST00000261800	human	ensembl	74_37	-1	known	missense	c.9316	p.V3106L	0.998	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT2	HGNC	ENSG00000086570				57	0	0	49	8	14.0351
NSD1	0	genome.wustl.edu	37	5	176637132	176637132	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	5	176637132	176637132	G	T	SNP	NSD1	ENST00000439151	human	ensembl	74_37	+1	known	missense	c.1732	p.A578S	0.864	NULL	pfam_PWWP_dom,pfam_SET_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_PWWP_dom,smart_Znf_PHD,smart_AWS,smart_SET_dom,smart_Post-SET_dom,pfscan_AWS,pfscan_PWWP_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger	-	no_errors	NSD1	HGNC	ENSG00000165671				120	0	0	108	17	13.6
FLT4	0	genome.wustl.edu	37	5	180030234	180030234	+	Silent	SNP	G	G	T			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	5	180030234	180030234	G	T	SNP	FLT4	ENST00000261937	human	ensembl	74_37	-1	known	silent	c.4050	p.S1350	0.010	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_VEGFR3_rcpt	-	no_errors	FLT4	HGNC	ENSG00000037280				61	0	0	35	7	16.6667
PRDM9	0	genome.wustl.edu	37	5	23521174	23521174	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	5	23521174	23521174	G	T	SNP	PRDM9	ENST00000296682	human	ensembl	74_37	+1	known	nonsense	c.394	p.E132*	0.007	NULL	pfam_Znf_C2H2,pfam_SSXRD_motif,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	PRDM9	HGNC	ENSG00000164256				87	0	0	59	9	13.2353
NNT	0	genome.wustl.edu	37	5	43653307	43653307	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	5	43653307	43653307	G	A	SNP	NNT	ENST00000264663	human	ensembl	74_37	+1	known	missense	c.2051	p.G684D	1.000	pfam_NADH_DH_b	pfam_NADH_DH_b,pfam_AlaDH/PNT_NAD(H)-bd,pfam_AlaDH/PNT_N,tigrfam_NADP_transhyd_a	-	no_errors	NNT	HGNC	ENSG00000112992				41	0	0	16	12	42.8571
ENSG00000251606	0	genome.wustl.edu	37	5	96518939	96518939	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	5	96518939	96518939	C	G	SNP	ENSG00000251606	ENST00000509481	human	ensembl	74_37	+1	putative	missense	c.260	p.A87G	0.000	NULL	NULL	-	no_errors	CTD-2215E18.1	Clone_based_vega_gene	ENSG00000251606				67	0	0	53	5	8.62069
HIVEP1	0	genome.wustl.edu	37	6	12120526	12120526	+	Silent	SNP	T	T	C			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	6	12120526	12120526	T	C	SNP	HIVEP1	ENST00000379388	human	ensembl	74_37	+1	known	silent	c.498	p.S166	0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP1	HGNC	ENSG00000095951				132	0	0	131	53	28.8043
UTRN	0	genome.wustl.edu	37	6	144858786	144858786	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	6	144858786	144858786	C	A	SNP	UTRN	ENST00000367545	human	ensembl	74_37	+1	known	missense	c.6302	p.T2101K	0.061	smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_dom,superfamily_CH-domain,superfamily_WW_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_dom,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_dom,pfscan_Znf_ZZ	-	no_errors	UTRN	HGNC	ENSG00000152818				27	0	0	27	9	25
SYNE1	0	genome.wustl.edu	37	6	152658021	152658021	+	Silent	SNP	A	A	G			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	6	152658021	152658021	A	G	SNP	SYNE1	ENST00000265368	human	ensembl	74_37	-1	known	silent	c.12483	p.S4161	0.353	superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018				154	0	0	106	22	17.1875
SYNE1	0	genome.wustl.edu	37	6	152671388	152671388	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	6	152671388	152671388	A	G	SNP	SYNE1	ENST00000265368	human	ensembl	74_37	-1	known	missense	c.11816	p.L3939P	1.000	superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018				119	0	0	75	19	20.2128
NUP153	0	genome.wustl.edu	37	6	17629536	17629536	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	6	17629536	17629536	G	C	SNP	NUP153	ENST00000537253	human	ensembl	74_37	-1	known	missense	c.2987	p.S996C	0.998	NULL	pfam_Nucleoporin_Nup153,pfam_Znf_RanBP2,pfam_Retro-transposon_transp_CS,smart_Znf_RanBP2,pfscan_Znf_RanBP2	-	no_errors	NUP153	HGNC	ENSG00000124789				100	0	0	113	8	6.61157
HIST1H3D	0	genome.wustl.edu	37	6	26197279	26197279	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	6	26197279	26197279	G	C	SNP	HIST1H3D	ENST00000356476	human	ensembl	74_37	-1	known	missense	c.200	p.P67R	1.000	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	-	no_errors	HIST1H3D	HGNC	ENSG00000197409				107	0	0	78	15	16.129
OR2J2	0	genome.wustl.edu	37	6	29141962	29141962	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	6	29141962	29141962	G	A	SNP	OR2J2	ENST00000377167	human	ensembl	74_37	+1	known	missense	c.550	p.A184T	0.980	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2J2	HGNC	ENSG00000204700				179	0	0	204	12	5.55556
FAM50B	0	genome.wustl.edu	37	6	3850733	3850733	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	6	3850733	3850733	G	A	SNP	FAM50B	ENST00000380272	human	ensembl	74_37	+1	novel	missense	c.688	p.A230T	0.872	pfam_XAP5	pfam_XAP5	-	no_errors	FAM50B	HGNC	ENSG00000145945				74	0	0	66	5	7.04225
PHF3	0	genome.wustl.edu	37	6	64422326	64422326	+	Silent	SNP	T	T	C			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	6	64422326	64422326	T	C	SNP	PHF3	ENST00000262043	human	ensembl	74_37	+1	known	silent	c.4842	p.S1614	1.000	NULL	pfam_TFIIS_cen_dom,pfam_SPOC_C,pfam_Znf_PHD-finger,superfamily_TFIIS_cen_dom,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_TFS2M,pfscan_Znf_PHD-finger	-	no_errors	PHF3	HGNC	ENSG00000118482				57	0	0	53	11	17.1875
HTR1E	0	genome.wustl.edu	37	6	87725916	87725916	+	Silent	SNP	G	G	A			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	6	87725916	87725916	G	A	SNP	HTR1E	ENST00000305344	human	ensembl	74_37	+1	known	silent	c.864	p.K288	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_5HT_rcpt	-	no_errors	HTR1E	HGNC	ENSG00000168830				171	0	0	132	10	7.04225
MUC17	0	genome.wustl.edu	37	7	100685356	100685356	+	Silent	SNP	A	A	G			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	7	100685356	100685356	A	G	SNP	MUC17	ENST00000306151	human	ensembl	74_37	+1	known	silent	c.10659	p.Q3553	0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_EG-like_dom,pfscan_SEA_dom	-	no_errors	MUC17	HGNC	ENSG00000169876				395	0	0	378	63	14.2857
PLOD3	0	genome.wustl.edu	37	7	100855607	100855607	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	7	100855607	100855607	C	A	SNP	PLOD3	ENST00000223127	human	ensembl	74_37	-1	known	missense	c.1054	p.D352Y	0.997	NULL	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	PLOD3	HGNC	ENSG00000106397				75	0	0	104	8	7.14286
LRRN3	0	genome.wustl.edu	37	7	110764339	110764339	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	7	110764339	110764339	C	T	SNP	LRRN3	ENST00000308478	human	ensembl	74_37	+1	known	missense	c.1511	p.A504V	1.000	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_LRR-contain_N,superfamily_Fibronectin_type3,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	LRRN3	HGNC	ENSG00000173114				64	0	0	93	6	6.06061
LRGUK	0	genome.wustl.edu	37	7	133876492	133876492	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	7	133876492	133876492	A	T	SNP	LRGUK	ENST00000285928	human	ensembl	74_37	+1	known	missense	c.1420	p.M474L	1.000	pfam_GK/Ca_channel_bsu,superfamily_P-loop_NTPase,smart_GK/Ca_channel_bsu,pfscan_Guanylate_kin-like	pfam_GK/Ca_channel_bsu,pfam_Leu-rich_rpt,superfamily_P-loop_NTPase,smart_GK/Ca_channel_bsu,pfscan_Guanylate_kin-like	-	no_errors	LRGUK	HGNC	ENSG00000155530				65	0	0	82	10	10.8696
CLCN1	0	genome.wustl.edu	37	7	143048760	143048760	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	7	143048760	143048760	C	T	SNP	CLCN1	ENST00000343257	human	ensembl	74_37	+1	known	missense	c.2669	p.T890M	0.835	NULL	pfam_Cl-channel_volt-gated,pfam_CBS_dom,superfamily_Cl-channel_core,prints_Cl-channel_volt-gated,prints_Cl_channel-1	-	no_errors	CLCN1	HGNC	ENSG00000188037				71	0	0	57	5	8.06452
BZW2	0	genome.wustl.edu	37	7	16745690	16745690	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	7	16745690	16745690	G	A	SNP	BZW2	ENST00000258761	human	ensembl	74_37	+1	known	missense	c.1237	p.E413K	1.000	pfam_W2_domain	pfam_W2_domain,superfamily_ARM-type_fold,smart_W2_domain	-	no_errors	BZW2	HGNC	ENSG00000136261				95	0	0	73	32	30.4762
ABCA13	0	genome.wustl.edu	37	7	48559652	48559652	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	7	48559652	48559652	T	C	SNP	ABCA13	ENST00000435803	human	ensembl	74_37	+1	known	missense	c.13813	p.Y4605H	1.000	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA13	HGNC	ENSG00000179869				35	0	0	37	4	9.7561
DLC1	0	genome.wustl.edu	37	8	13072247	13072247	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	8	13072247	13072247	T	A	SNP	DLC1	ENST00000316609	human	ensembl	74_37	-1	known	missense	c.1385	p.K462M	0.419	NULL	NULL	-	no_errors	DLC1	HGNC	ENSG00000164741				135	0	0	82	9	9.89011
ADCY8	0	genome.wustl.edu	37	8	131795942	131795942	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	8	131795942	131795942	C	T	SNP	ADCY8	ENST00000286355	human	ensembl	74_37	-1	known	missense	c.3263	p.R1088Q	1.000	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY8	HGNC	ENSG00000155897				66	0	0	65	19	22.619
BAI1	0	genome.wustl.edu	37	8	143570781	143570781	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	8	143570781	143570781	G	C	SNP	BAI1	ENST00000323289	human	ensembl	74_37	+1	known	missense	c.2613	p.E871D	1.000	NULL	pfam_GPCR_2_secretin-like,pfam_Thrombospondin_1_rpt,pfam_DUF3497,pfam_GPS_dom,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_GPCR_2_extracellular_dom,smart_GPS_dom,prints_GPCR_2_brain-spec_angio_inhib,prints_GPCR_2_secretin-like,pfscan_GPS_dom,pfscan_Thrombospondin_1_rpt,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like	-	no_errors	BAI1	HGNC	ENSG00000181790				109	0	0	142	11	7.18954
FAM160B2	0	genome.wustl.edu	37	8	21959240	21959240	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	8	21959240	21959240	G	A	SNP	FAM160B2	ENST00000289921	human	ensembl	74_37	+1	known	missense	c.1729	p.V577I	0.999	NULL	pfam_RetinoicA-induced_16-like	-	no_errors	FAM160B2	HGNC	ENSG00000158863				20	0	0	14	3	17.6471
HOOK3	0	genome.wustl.edu	37	8	42868523	42868523	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	8	42868523	42868523	G	C	SNP	HOOK3	ENST00000307602	human	ensembl	74_37	+1	known	missense	c.1996	p.V666L	1.000	pfam_Hook-related_fam	pfam_Hook-related_fam,superfamily_t-SNARE	-	no_errors	HOOK3	HGNC	ENSG00000168172				146	0	0	150	12	7.40741
LYN	0	genome.wustl.edu	37	8	56910959	56910959	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	8	56910959	56910959	C	G	SNP	LYN	ENST00000519728	human	ensembl	74_37	+1	known	missense	c.1105	p.R369G	0.875	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,prints_SH3_domain	-	no_errors	LYN	HGNC	ENSG00000254087				63	0	0	78	5	6.0241
IMPAD1	0	genome.wustl.edu	37	8	57878831	57878831	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	8	57878831	57878831	G	A	SNP	IMPAD1	ENST00000262644	human	ensembl	74_37	-1	known	missense	c.727	p.R243C	1.000	pfam_Inositol_monophosphatase	pfam_Inositol_monophosphatase	-	no_errors	IMPAD1	HGNC	ENSG00000104331				103	0	0	132	18	12
NTMT1	0	genome.wustl.edu	37	9	132397491	132397491	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	9	132397491	132397491	C	G	SNP	NTMT1	ENST00000372480	human	ensembl	74_37	+1	known	missense	c.420	p.H140Q	1.000	pfam_DUF858_MeTrfase_lik,pfam_Methyltransf_11,pfam_Methyltransf_12,pfam_UbiE/COQ5_MeTrFase,pfam_O_MeTrfase_2,pirsf_DUF858_MeTrfase_lik	pfam_DUF858_MeTrfase_lik,pfam_Methyltransf_11,pfam_Methyltransf_12,pfam_UbiE/COQ5_MeTrFase,pfam_O_MeTrfase_2,pirsf_DUF858_MeTrfase_lik	-	no_errors	NTMT1	HGNC	ENSG00000148335				83	0	0	75	7	8.53659
ARHGEF39	0	genome.wustl.edu	37	9	35662219	35662219	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	9	35662219	35662219	C	G	SNP	ARHGEF39	ENST00000378387	human	ensembl	74_37	-1	known	missense	c.949	p.E317Q	1.000	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF39	HGNC	ENSG00000137135				115	0	0	48	48	50
KIAA2026	0	genome.wustl.edu	37	9	5968974	5968974	+	Silent	SNP	G	G	A			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	9	5968974	5968974	G	A	SNP	KIAA2026	ENST00000399933	human	ensembl	74_37	-1	novel	silent	c.1257	p.H419	0.991	NULL	superfamily_Bromodomain	-	no_errors	KIAA2026	HGNC	ENSG00000183354				24	0	0	18	6	25
PTPRD	0	genome.wustl.edu	37	9	8317903	8317903	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	9	8317903	8317903	G	C	SNP	PTPRD	ENST00000356435	human	ensembl	74_37	-1	known	missense	c.5710	p.L1904V	1.000	smart_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRD	HGNC	ENSG00000153707				183	0	0	183	25	12.0192
SHC3	0	genome.wustl.edu	37	9	91686168	91686168	+	Splice_Site	SNP	C	C	A			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	9	91686168	91686168	C	A	SNP	SHC3	ENST00000375835	human	ensembl	74_37	-1	known	splice_site	c.730-1	e5-1	1.000	-	-	-	no_errors	SHC3	HGNC	ENSG00000148082				57	0	0	63	7	10
FRMD7	0	genome.wustl.edu	37	X	131212239	131212239	+	Silent	SNP	A	A	C			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	X	131212239	131212239	A	C	SNP	FRMD7	ENST00000298542	human	ensembl	74_37	-1	known	silent	c.1806	p.P602	1.000	NULL	pfam_FERM_PH-like_C,pfam_FERM_N,pfam_FERM-adjacent,pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,prints_Band_41_fam,pfscan_FERM_domain	-	no_errors	FRMD7	HGNC	ENSG00000165694				62	0	0	78	11	12.3596
USP26	0	genome.wustl.edu	37	X	132161820	132161820	+	Silent	SNP	A	A	C			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	X	132161820	132161820	A	C	SNP	USP26	ENST00000370832	human	ensembl	74_37	-1	known	silent	c.429	p.S143	0.000	NULL	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP26	HGNC	ENSG00000134588				36	0	0	44	11	20
FLNA	0	genome.wustl.edu	37	X	153594681	153594681	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	X	153594681	153594681	G	A	SNP	FLNA	ENST00000369850	human	ensembl	74_37	-1	known	missense	c.1223	p.T408M	1.000	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNA	HGNC	ENSG00000196924				51	0	0	46	4	8
USP51	0	genome.wustl.edu	37	X	55515195	55515195	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	X	55515195	55515195	G	A	SNP	USP51	ENST00000500968	human	ensembl	74_37	-1	known	missense	c.178	p.P60S	0.081	NULL	pfam_Peptidase_C19/C67,pfam_Znf_UBP,pfscan_Znf_UBP,pfscan_Peptidase_C19/C67	-	no_errors	USP51	HGNC	ENSG00000247746				19	0	0	28	8	22.2222
POF1B	0	genome.wustl.edu	37	X	84586035	84586035	+	Silent	SNP	T	T	G			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	X	84586035	84586035	T	G	SNP	POF1B	ENST00000373145	human	ensembl	74_37	-1	known	silent	c.774	p.G258	1.000	NULL	NULL	-	no_errors	POF1B	HGNC	ENSG00000124429				29	0	0	41	4	8.88889
KIAA1009	0	genome.wustl.edu	37	6	84862599	84862600	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	6	84862599	84862600	-	T	INS	KIAA1009	ENST00000403245	human	ensembl	74_37	-1	known	frame_shift_ins	c.3294_3293	p.R1099fs	0.003:0.003	NULL	NULL	-	no_errors	KIAA1009	HGNC	ENSG00000135315				104	0	0	76	11	12.6437
FGD1	0	genome.wustl.edu	37	X	54497148	54497148	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6565-01A-11D-1800-08	TCGA-BR-6565-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f702b28-c460-4265-9d93-83a18b65255f	0ce7327b-a7c7-4d7d-aac6-5d93385d2301	X	54497148	54497148	G	-	DEL	FGD1	ENST00000375135	human	ensembl	74_37	-1	known	frame_shift_del	c.527	p.P176fs	0.039	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Znf_FYVE,superfamily_DH-domain,superfamily_Znf_FYVE_PHD,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD1	HGNC	ENSG00000102302				23	0	0	6	3	33.3333
