Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
DPH5	0	genome.wustl.edu	37	1	101456138	101456138	+	Silent	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	101456138	101456138	G	A	SNP	DPH5	ENST00000370109	human	ensembl	74_37	-1	known	silent	c.684	p.D228	0.139	pfam_4pyrrol_Mease,superfamily_4pyrrol_Mease,pirsf_Dphthn_synthase,tigrfam_Dphthn_synthase	pfam_4pyrrol_Mease,superfamily_4pyrrol_Mease,pirsf_Dphthn_synthase,tigrfam_Dphthn_synthase	-	no_errors	DPH5	HGNC	ENSG00000117543				105	0	0	66	18	21.4286
NTNG1	0	genome.wustl.edu	37	1	107691419	107691419	+	Silent	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	107691419	107691419	G	A	SNP	NTNG1	ENST00000370068	human	ensembl	74_37	+1	known	silent	c.204	p.P68	0.747	smart_Laminin_N,pfscan_Laminin_N	pfam_Laminin_N,pfam_EGF_laminin,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	NTNG1	HGNC	ENSG00000162631				134	0	0	83	24	22.4299
EPS8L3	0	genome.wustl.edu	37	1	110301215	110301215	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	110301215	110301215	T	C	SNP	EPS8L3	ENST00000369805	human	ensembl	74_37	-1	known	missense	c.535	p.M179V	0.000	NULL	pfam_PTB,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_SAM/pointed,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	EPS8L3	HGNC	ENSG00000198758				73	0	0	75	6	7.40741
LRIF1	0	genome.wustl.edu	37	1	111490937	111490937	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	111490937	111490937	C	T	SNP	LRIF1	ENST00000369763	human	ensembl	74_37	-1	known	missense	c.1954	p.A652T	0.002	NULL	NULL	-	no_errors	LRIF1	HGNC	ENSG00000121931				110	1	0.900901	79	16	16.8421
DDX20	0	genome.wustl.edu	37	1	112308658	112308658	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	112308658	112308658	T	C	SNP	DDX20	ENST00000369702	human	ensembl	74_37	+1	known	missense	c.1612	p.C538R	0.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX20	HGNC	ENSG00000064703				72	0	0	75	4	5.06329
SPAG17	0	genome.wustl.edu	37	1	118609480	118609480	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	118609480	118609480	A	G	SNP	SPAG17	ENST00000336338	human	ensembl	74_37	-1	known	missense	c.2428	p.Y810H	1.000	NULL	NULL	-	no_errors	SPAG17	HGNC	ENSG00000155761				86	0	0	46	7	13.2075
C1orf158	0	genome.wustl.edu	37	1	12806445	12806445	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	12806445	12806445	T	C	SNP	C1orf158	ENST00000288048	human	ensembl	74_37	+1	known	missense	c.67	p.S23P	0.998	NULL	NULL	-	no_errors	C1orf158	HGNC	ENSG00000157330				100	0	0	61	5	7.57576
ATAD3B	0	genome.wustl.edu	37	1	1421563	1421563	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	1421563	1421563	G	T	SNP	ATAD3B	ENST00000308647	human	ensembl	74_37	+1	known	missense	c.1037	p.R346M	1.000	superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_DUF3523,pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	ATAD3B	HGNC	ENSG00000160072				82	0	0	93	24	20.5128
GJA8	0	genome.wustl.edu	37	1	147380281	147380281	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	147380281	147380281	G	A	SNP	GJA8	ENST00000240986	human	ensembl	74_37	+1	known	missense	c.199	p.D67N	1.000	pfam_Connexin_N,smart_Connexin_N,prints_Connexin	pfam_Connexin_N,pfam_Connexin50,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin,prints_Connexin50	-	no_errors	GJA8	HGNC	ENSG00000121634				69	0	0	54	20	27.027
POGZ	0	genome.wustl.edu	37	1	151378226	151378226	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	151378226	151378226	C	A	SNP	POGZ	ENST00000271715	human	ensembl	74_37	-1	known	missense	c.3285	p.K1095N	1.000	NULL	pfam_DDE_SF_endonuclease_CENPB-like,pfam_HTH_CenpB_DNA-bd_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_HTH_CenpB_DNA-bd_dom,pfscan_Znf_C2H2	-	no_errors	POGZ	HGNC	ENSG00000143442				92	0	0	88	32	26.6667
TCHH	0	genome.wustl.edu	37	1	152080709	152080709	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	152080709	152080709	G	A	SNP	TCHH	ENST00000368804	human	ensembl	74_37	-1	known	missense	c.4984	p.R1662C	0.262	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom	-	no_errors	TCHH	HGNC	ENSG00000159450				143	0	0	189	19	9.13462
FLG	0	genome.wustl.edu	37	1	152280923	152280923	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	152280923	152280923	C	G	SNP	FLG	ENST00000368799	human	ensembl	74_37	-1	known	missense	c.6439	p.G2147R	0.000	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631				507	0	0	416	142	25.448
LOR	0	genome.wustl.edu	37	1	153233517	153233517	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	153233517	153233517	G	A	SNP	LOR	ENST00000368742	human	ensembl	74_37	+1	known	missense	c.92	p.G31D	0.005	NULL	NULL	-	no_errors	LOR	HGNC	ENSG00000203782				24	0	0	37	5	11.9048
ILF2	0	genome.wustl.edu	37	1	153642708	153642708	+	Splice_Site	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	153642708	153642708	T	C	SNP	ILF2	ENST00000361891	human	ensembl	74_37	-1	known	splice_site	c.6-2	e2-2	0.994	-	-	-	no_errors	ILF2	HGNC	ENSG00000143621				79	0	0	75	22	22.6804
DENND4B	0	genome.wustl.edu	37	1	153907329	153907329	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	153907329	153907329	G	A	SNP	DENND4B	ENST00000361217	human	ensembl	74_37	-1	known	missense	c.2680	p.R894W	0.968	NULL	pfam_DENN_dom,pfam_dDENN_dom,pfam_uDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND4B	HGNC	ENSG00000198837				112	0	0	102	23	18.4
FAM189B	0	genome.wustl.edu	37	1	155221667	155221667	+	Silent	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	155221667	155221667	T	C	SNP	FAM189B	ENST00000361361	human	ensembl	74_37	-1	known	silent	c.651	p.P217	0.200	NULL	pfam_CD20-like	-	no_errors	FAM189B	HGNC	ENSG00000160767				10	0	0	6	2	25
RXFP4	0	genome.wustl.edu	37	1	155911718	155911718	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	155911718	155911718	G	A	SNP	RXFP4	ENST00000368318	human	ensembl	74_37	+1	known	missense	c.218	p.G73D	0.040	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_ATII_rcpt	-	no_errors	RXFP4	HGNC	ENSG00000173080				64	0	0	68	28	29.1667
SMG5	0	genome.wustl.edu	37	1	156235649	156235649	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	156235649	156235649	T	C	SNP	SMG5	ENST00000361813	human	ensembl	74_37	-1	known	missense	c.1778	p.Q593R	1.000	NULL	pfam_EST1,smart_PIN_dom	-	no_errors	SMG5	HGNC	ENSG00000198952				131	0	0	122	21	14.6853
SMG5	0	genome.wustl.edu	37	1	156235910	156235910	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	156235910	156235910	G	A	SNP	SMG5	ENST00000361813	human	ensembl	74_37	-1	known	missense	c.1517	p.T506M	0.998	NULL	pfam_EST1,smart_PIN_dom	-	no_errors	SMG5	HGNC	ENSG00000198952				115	0	0	104	35	25.1799
APOA1BP	0	genome.wustl.edu	37	1	156563292	156563292	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	156563292	156563292	C	T	SNP	APOA1BP	ENST00000368234	human	ensembl	74_37	+1	known	missense	c.553	p.P185S	1.000	NULL	pfam_YjeF_N_dom,superfamily_YjeF_N_dom	-	no_errors	APOA1BP	HGNC	ENSG00000163382				88	0	0	57	14	19.7183
PEAR1	0	genome.wustl.edu	37	1	156875185	156875185	+	Silent	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	156875185	156875185	T	C	SNP	PEAR1	ENST00000292357	human	ensembl	74_37	+1	known	silent	c.276	p.H92	0.116	superfamily_Growth_fac_rcpt_N_dom,pfscan_EMI_domain	pfam_EGF_laminin,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_EGF_laminin,pfscan_EG-like_dom,pfscan_EMI_domain	-	no_errors	PEAR1	HGNC	ENSG00000187800				42	0	0	60	6	9.09091
CD5L	0	genome.wustl.edu	37	1	157804431	157804431	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	157804431	157804431	C	T	SNP	CD5L	ENST00000368174	human	ensembl	74_37	-1	known	missense	c.484	p.V162M	0.990	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR,prints_SRCR	-	no_errors	CD5L	HGNC	ENSG00000073754				104	0	0	108	29	21.1679
CD1D	0	genome.wustl.edu	37	1	158152844	158152844	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	158152844	158152844	T	C	SNP	CD1D	ENST00000368171	human	ensembl	74_37	+1	known	missense	c.784	p.Y262H	0.830	pfam_Ig_C1-set,smart_Ig_C1-set,pfscan_Ig-like_dom	pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	CD1D	HGNC	ENSG00000158473				114	0	0	113	20	15.0376
SPTA1	0	genome.wustl.edu	37	1	158632648	158632648	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	158632648	158632648	A	G	SNP	SPTA1	ENST00000368147	human	ensembl	74_37	-1	known	missense	c.2308	p.S770P	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_hand_dom,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554				86	0	0	58	11	15.942
OR6K3	0	genome.wustl.edu	37	1	158687066	158687066	+	Silent	SNP	A	A	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	158687066	158687066	A	G	SNP	OR6K3	ENST00000368146	human	ensembl	74_37	-1	known	silent	c.888	p.L296	0.015	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6K3	HGNC	ENSG00000203757				113	0	0	97	21	17.7966
DCAF8	0	genome.wustl.edu	37	1	160208501	160208501	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	160208501	160208501	C	T	SNP	DCAF8	ENST00000608310	human	ensembl	74_37	-1	known	missense	c.1222	p.A408T	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_Pex19,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF8	HGNC	ENSG00000132716				35	0	0	20	8	28.5714
B4GALT3	0	genome.wustl.edu	37	1	161143511	161143511	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	161143511	161143511	C	T	SNP	B4GALT3	ENST00000319769	human	ensembl	74_37	-1	known	silent	c.687	p.P229	0.368	pfam_Galactosyl_T_C,prints_Galactosyl_T	pfam_Galactosyl_T_C,prints_Galactosyl_T	-	no_errors	B4GALT3	HGNC	ENSG00000158850				95	0	0	98	6	5.76923
FCRLB	0	genome.wustl.edu	37	1	161695837	161695837	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	161695837	161695837	C	T	SNP	FCRLB	ENST00000367948	human	ensembl	74_37	+1	known	silent	c.534	p.S178	1.000	smart_Ig_sub	smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	FCRLB	HGNC	ENSG00000162746				60	0	0	35	16	31.3725
SPEN	0	genome.wustl.edu	37	1	16258904	16258904	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	16258904	16258904	A	G	SNP	SPEN	ENST00000375759	human	ensembl	74_37	+1	known	missense	c.6169	p.T2057A	0.000	NULL	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC_like_C_dom,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526				69	0	0	84	6	6.66667
HSD17B7	0	genome.wustl.edu	37	1	162769680	162769680	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	162769680	162769680	G	A	SNP	HSD17B7	ENST00000254521	human	ensembl	74_37	+1	known	missense	c.595	p.A199T	1.000	prints_Glc/ribitol_DH	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH	-	no_errors	HSD17B7	HGNC	ENSG00000132196				42	0	0	28	10	26.3158
RXRG	0	genome.wustl.edu	37	1	165386448	165386448	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	165386448	165386448	T	C	SNP	RXRG	ENST00000359842	human	ensembl	74_37	-1	known	missense	c.452	p.Y151C	0.998	pfam_Znf_hrmn_rcpt,smart_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt,prints_Znf_hrmn_rcpt	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Nuc_recep-AF1,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Retinoid-X_rcpt/HNF4,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_COUP_TF	-	no_errors	RXRG	HGNC	ENSG00000143171				154	0	0	96	41	29.927
NADK	0	genome.wustl.edu	37	1	1685737	1685737	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	1685737	1685737	G	A	SNP	NADK	ENST00000344463	human	ensembl	74_37	-1	known	missense	c.1364	p.T455M	0.991	pfam_PolyP/ATP_NADK_prd,superfamily_ATP-NAD_kinase_PpnK-typ	pfam_PolyP/ATP_NADK_prd,superfamily_ATP-NAD_kinase_PpnK-typ	-	no_errors	NADK	HGNC	ENSG00000008130				28	0	0	36	6	14.2857
F5	0	genome.wustl.edu	37	1	169515679	169515679	+	Splice_Site	SNP	C	C	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	169515679	169515679	C	A	SNP	F5	ENST00000367797	human	ensembl	74_37	-1	known	splice_site	c.1762+1	e11+1	1.000	-	-	-	no_errors	F5	HGNC	ENSG00000198734				75	0	0	57	3	5
MYOC	0	genome.wustl.edu	37	1	171605701	171605701	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	171605701	171605701	C	T	SNP	MYOC	ENST00000037502	human	ensembl	74_37	-1	known	silent	c.879	p.T293	0.000	pfam_Olfac-like,smart_Olfac-like,pfscan_Olfac-like	pfam_Olfac-like,smart_Olfac-like,pfscan_Olfac-like	-	no_errors	MYOC	HGNC	ENSG00000034971				69	0	0	81	9	10
IVNS1ABP	0	genome.wustl.edu	37	1	185267231	185267231	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	185267231	185267231	G	A	SNP	IVNS1ABP	ENST00000367498	human	ensembl	74_37	-1	known	missense	c.1865	p.T622M	1.000	pfam_Kelch_1,pfam_Kelch_2,smart_Kelch_1	pfam_Kelch_1,pfam_Kelch_2,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	IVNS1ABP	HGNC	ENSG00000116679				218	0	0	145	48	24.8705
RGS18	0	genome.wustl.edu	37	1	192128397	192128397	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	192128397	192128397	A	T	SNP	RGS18	ENST00000367460	human	ensembl	74_37	+1	known	missense	c.167	p.E56V	0.911	NULL	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS18	HGNC	ENSG00000150681				59	0	0	41	11	21.1538
UBR4	0	genome.wustl.edu	37	1	19449413	19449413	+	Silent	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	19449413	19449413	G	A	SNP	UBR4	ENST00000375267	human	ensembl	74_37	-1	known	silent	c.9730	p.L3244	1.000	superfamily_ARM-type_fold	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR4	HGNC	ENSG00000127481				105	0	0	110	8	6.77966
KIF21B	0	genome.wustl.edu	37	1	200973959	200973959	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	200973959	200973959	G	A	SNP	KIF21B	ENST00000422435	human	ensembl	74_37	-1	known	missense	c.835	p.R279W	1.000	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,pfam_WD40_repeat,superfamily_P-loop_NTPase,superfamily_WD40_repeat_dom,superfamily_Prefoldin,smart_Kinesin_motor_dom,smart_WD40_repeat,pfscan_Kinesin_motor_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Kinesin_motor_dom	-	no_errors	KIF21B	HGNC	ENSG00000116852				48	0	0	37	16	30.1887
CACNA1S	0	genome.wustl.edu	37	1	201058527	201058527	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	201058527	201058527	C	T	SNP	CACNA1S	ENST00000362061	human	ensembl	74_37	-1	known	silent	c.759	p.R253	0.043	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su,prints_VDCC_L_a1ssu	-	no_errors	CACNA1S	HGNC	ENSG00000081248				39	0	0	29	8	21.6216
GPR37L1	0	genome.wustl.edu	37	1	202097020	202097020	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	202097020	202097020	C	T	SNP	GPR37L1	ENST00000367282	human	ensembl	74_37	+1	known	missense	c.782	p.T261M	0.898	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPR37_orph,prints_GPCR_Rhodpsn	-	no_errors	GPR37L1	HGNC	ENSG00000170075				52	0	0	49	12	19.6721
DSTYK	0	genome.wustl.edu	37	1	205117339	205117339	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	205117339	205117339	G	A	SNP	DSTYK	ENST00000367162	human	ensembl	74_37	-1	known	missense	c.2596	p.R866W	0.999	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	DSTYK	HGNC	ENSG00000133059				116	0	0	81	29	26.3636
C4BPB	0	genome.wustl.edu	37	1	207269950	207269950	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	207269950	207269950	T	C	SNP	C4BPB	ENST00000243611	human	ensembl	74_37	+1	known	missense	c.493	p.C165R	0.551	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	C4BPB	HGNC	ENSG00000123843				58	0	0	46	12	20.6897
RD3	0	genome.wustl.edu	37	1	211652526	211652526	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	211652526	211652526	C	T	SNP	RD3	ENST00000367002	human	ensembl	74_37	-1	known	missense	c.440	p.R147H	0.858	NULL	NULL	-	no_errors	RD3	HGNC	ENSG00000198570				28	0	0	22	6	21.4286
SLC30A1	0	genome.wustl.edu	37	1	211748999	211748999	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	211748999	211748999	G	A	SNP	SLC30A1	ENST00000367001	human	ensembl	74_37	-1	known	missense	c.1255	p.P419S	1.000	pfam_Cation_efflux	pfam_Cation_efflux,tigrfam_Cation_efflux	-	no_errors	SLC30A1	HGNC	ENSG00000170385				100	1	0.990099	87	27	23.6842
CENPF	0	genome.wustl.edu	37	1	214813766	214813766	+	Silent	SNP	C	C	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	214813766	214813766	C	A	SNP	CENPF	ENST00000366955	human	ensembl	74_37	+1	known	silent	c.2085	p.T695	0.631	NULL	pfam_Centromere_CenpF_N,pfam_Centromere_CenpF_leu-rich_rpt,pfam_CenpF/LEK1_Rb-prot-bd	-	no_errors	CENPF	HGNC	ENSG00000117724				46	0	0	41	3	6.81818
HLX	0	genome.wustl.edu	37	1	221053526	221053526	+	Silent	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	221053526	221053526	G	A	SNP	HLX	ENST00000366903	human	ensembl	74_37	+1	known	silent	c.327	p.P109	0.992	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_HTH_motif,prints_Homeobox_metazoa	-	no_errors	HLX	HGNC	ENSG00000136630				35	0	0	49	10	16.9492
DUSP10	0	genome.wustl.edu	37	1	221875745	221875745	+	RNA	SNP	A	A	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	221875745	221875745	A	G	SNP	DUSP10	ENST00000468085	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	DUSP10	HGNC	ENSG00000143507				189	0	0	165	35	17.5
DISP1	0	genome.wustl.edu	37	1	223177225	223177225	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	223177225	223177225	A	G	SNP	DISP1	ENST00000284476	human	ensembl	74_37	+1	novel	missense	c.2486	p.H829R	1.000	NULL	pfam_Patched,pfam_MMPL_dom,pfscan_SSD	-	no_errors	DISP1	HGNC	ENSG00000154309				106	0	0	65	24	26.9663
TLR5	0	genome.wustl.edu	37	1	223286273	223286273	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	223286273	223286273	C	T	SNP	TLR5	ENST00000342210	human	ensembl	74_37	-1	known	missense	c.101	p.R34H	0.001	NULL	pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR5	HGNC	ENSG00000187554				68	0	0	59	10	14.4928
OBSCN	0	genome.wustl.edu	37	1	228447426	228447426	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	228447426	228447426	T	C	SNP	OBSCN	ENST00000570156	human	ensembl	74_37	+1	putative	missense	c.5086	p.Y1696H	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358				104	0	0	103	17	14.1667
OBSCN	0	genome.wustl.edu	37	1	228475418	228475418	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	228475418	228475418	G	A	SNP	OBSCN	ENST00000422127	human	ensembl	74_37	+1	known	missense	c.9568	p.A3190T	0.436	pfam_Ig_I-set,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358				53	0	0	50	14	21.875
OBSCN	0	genome.wustl.edu	37	1	228554800	228554800	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	228554800	228554800	G	A	SNP	OBSCN	ENST00000422127	human	ensembl	74_37	+1	known	missense	c.19552	p.A6518T	0.121	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358				21	0	0	19	5	20.8333
C1QC	0	genome.wustl.edu	37	1	22974057	22974057	+	Silent	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	22974057	22974057	G	A	SNP	C1QC	ENST00000374637	human	ensembl	74_37	+1	known	silent	c.519	p.S173	0.008	pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	pfam_C1q,pfam_Collagen,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	C1QC	HGNC	ENSG00000159189				60	0	0	77	12	13.4831
EXOC8	0	genome.wustl.edu	37	1	231471552	231471552	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	231471552	231471552	A	G	SNP	EXOC8	ENST00000360394	human	ensembl	74_37	-1	known	missense	c.1940	p.L647P	1.000	NULL	superfamily_Cullin_repeat-like_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	EXOC8	HGNC	ENSG00000116903				154	0	0	134	12	8.21918
NID1	0	genome.wustl.edu	37	1	236228195	236228195	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	236228195	236228195	G	A	SNP	NID1	ENST00000264187	human	ensembl	74_37	-1	known	missense	c.185	p.A62V	0.034	NULL	pfam_G2_nidogen/fibulin_G2F,pfam_LDLR_classB_rpt,pfam_Nidogen_extracell_dom,pfam_Thyroglobulin_1,pfam_EGF-like_Ca-bd_dom,superfamily_GFP,superfamily_Thyroglobulin_1,smart_Nidogen_extracell_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_G2_nidogen/fibulin_G2F,smart_Thyroglobulin_1,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDLR_classB_rpt,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thyroglobulin_1	-	no_errors	NID1	HGNC	ENSG00000116962				20	0	0	33	3	8.33333
ZP4	0	genome.wustl.edu	37	1	238048859	238048859	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	238048859	238048859	T	C	SNP	ZP4	ENST00000366570	human	ensembl	74_37	-1	known	missense	c.992	p.Y331C	0.977	pfam_ZP_dom,smart_ZP_dom,pfscan_ZP_dom	pfam_ZP_dom,pfam_P_trefoil,superfamily_P_trefoil,smart_P_trefoil,smart_ZP_dom,pfscan_ZP_dom,prints_ZP_dom	-	no_errors	ZP4	HGNC	ENSG00000116996				71	0	0	48	4	7.69231
FMN2	0	genome.wustl.edu	37	1	240371471	240371471	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	240371471	240371471	C	T	SNP	FMN2	ENST00000319653	human	ensembl	74_37	+1	known	missense	c.3359	p.P1120L	0.217	pfam_Formin_homology_1,smart_FH2_Formin	pfam_FH2_Formin,pfam_Formin_homology_1,smart_FH2_Formin,pfscan_DEP_dom	-	no_errors	FMN2	HGNC	ENSG00000155816				22	0	0	32	4	11.1111
IFNLR1	0	genome.wustl.edu	37	1	24484052	24484052	+	Silent	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	24484052	24484052	G	A	SNP	IFNLR1	ENST00000327535	human	ensembl	74_37	-1	known	silent	c.1131	p.S377	0.000	NULL	superfamily_Fibronectin_type3	-	no_errors	IFNLR1	HGNC	ENSG00000185436				37	0	0	35	19	35.1852
KIF26B	0	genome.wustl.edu	37	1	245704075	245704075	+	Silent	SNP	C	C	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	245704075	245704075	C	A	SNP	KIF26B	ENST00000407071	human	ensembl	74_37	+1	known	silent	c.1173	p.A391	1.000	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF26B	HGNC	ENSG00000162849				215	0	0	140	30	17.6471
RUNX3	0	genome.wustl.edu	37	1	25254159	25254159	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	25254159	25254159	C	A	SNP	RUNX3	ENST00000338888	human	ensembl	74_37	-1	known	missense	c.387	p.E129D	1.000	pfam_Runt_dom,superfamily_p53-like_TF_DNA-bd,pirsf_TF_Runt-rel_RUNX,pfscan_Runt_dom,prints_AML1_Runt	pfam_Runt_dom,pfam_RunxI_C_dom,superfamily_p53-like_TF_DNA-bd,pirsf_TF_Runt-rel_RUNX,pfscan_Runt_dom,prints_AML1_Runt	-	no_errors	RUNX3	HGNC	ENSG00000020633				158	0	0	180	30	14.2857
SEPN1	0	genome.wustl.edu	37	1	26135608	26135608	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	26135608	26135608	C	A	SNP	SEPN1	ENST00000354177	human	ensembl	74_37	+1	known	missense	c.737	p.A246D	1.000	NULL	pfscan_EF_hand_dom	-	no_errors	SEPN1	HGNC	ENSG00000162430				98	0	0	99	29	22.6562
CATSPER4	0	genome.wustl.edu	37	1	26524495	26524495	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	26524495	26524495	G	A	SNP	CATSPER4	ENST00000456354	human	ensembl	74_37	+1	known	missense	c.605	p.R202Q	1.000	pfam_Ion_trans_dom,pfam_PKD1_2_channel	pfam_Ion_trans_dom,pfam_PKD1_2_channel	-	no_errors	CATSPER4	HGNC	ENSG00000188782				176	0	0	174	38	17.9245
SDC3	0	genome.wustl.edu	37	1	31349853	31349853	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	31349853	31349853	G	A	SNP	SDC3	ENST00000339394	human	ensembl	74_37	-1	known	missense	c.416	p.A139V	0.992	pfam_Syndecan/Neurexin_dom	pfam_Syndecan/Neurexin_dom,smart_Neurexin-like	-	no_errors	SDC3	HGNC	ENSG00000162512				46	0	0	51	3	5.55556
KPNA6	0	genome.wustl.edu	37	1	32628122	32628122	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	32628122	32628122	T	C	SNP	KPNA6	ENST00000545542	human	ensembl	74_37	+1	known	missense	c.923	p.L308P	1.000	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo	pfam_Armadillo,pfam_Importin-a_IBB,pfam_HEAT,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo,pfscan_Importin-a_IBB	-	no_errors	KPNA6	HGNC	ENSG00000025800				77	0	0	66	7	9.58904
TRIM62	0	genome.wustl.edu	37	1	33623854	33623854	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	33623854	33623854	C	A	SNP	TRIM62	ENST00000291416	human	ensembl	74_37	-1	known	missense	c.877	p.V293L	1.000	superfamily_ConA-like_lec_gl_sf,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM62	HGNC	ENSG00000116525				101	1	0.980392	91	15	14.1509
NCDN	0	genome.wustl.edu	37	1	36031043	36031043	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	36031043	36031043	G	A	SNP	NCDN	ENST00000356090	human	ensembl	74_37	+1	known	missense	c.1969	p.A657T	0.435	NULL	NULL	-	no_errors	NCDN	HGNC	ENSG00000020129				29	0	0	27	7	20.5882
AGO4	0	genome.wustl.edu	37	1	36306800	36306800	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	36306800	36306800	G	T	SNP	AGO4	ENST00000373210	human	ensembl	74_37	+1	known	nonsense	c.1759	p.G587*	1.000	pfam_Piwi,superfamily_RNaseH-like_dom,smart_Piwi,pfscan_Piwi	pfam_Piwi,pfam_PAZ_dom,pfam_DUF1785,superfamily_RNaseH-like_dom,superfamily_PAZ_dom,smart_PAZ_dom,smart_Piwi,pfscan_PAZ_dom,pfscan_Piwi	-	no_errors	AGO4	HGNC	ENSG00000134698				56	0	0	48	12	20
AGO3	0	genome.wustl.edu	37	1	36520603	36520603	+	Silent	SNP	A	A	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	36520603	36520603	A	G	SNP	AGO3	ENST00000373191	human	ensembl	74_37	+1	known	silent	c.2331	p.A777	0.992	pfam_Piwi,superfamily_RNaseH-like_dom,smart_Piwi,pfscan_Piwi	pfam_Piwi,pfam_PAZ_dom,pfam_DUF1785,superfamily_RNaseH-like_dom,superfamily_PAZ_dom,smart_PAZ_dom,smart_Piwi,pfscan_PAZ_dom,pfscan_Piwi	-	no_errors	AGO3	HGNC	ENSG00000126070				113	1	0.877193	65	13	16.6667
HEYL	0	genome.wustl.edu	37	1	40098329	40098329	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	40098329	40098329	G	A	SNP	HEYL	ENST00000372852	human	ensembl	74_37	-1	known	missense	c.139	p.H47Y	1.000	pfam_bHLH_dom,superfamily_bHLH_dom,pfscan_bHLH_dom	pfam_bHLH_dom,pfam_Orange,superfamily_bHLH_dom,smart_bHLH_dom,smart_Orange_subgr,pfscan_Orange,pfscan_bHLH_dom	-	no_errors	HEYL	HGNC	ENSG00000163909				240	0	0	267	16	5.65371
HPCAL4	0	genome.wustl.edu	37	1	40149756	40149756	+	Silent	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	40149756	40149756	G	A	SNP	HPCAL4	ENST00000372844	human	ensembl	74_37	-1	known	silent	c.231	p.D77	0.998	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom,prints_Recoverin	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom,prints_Recoverin	-	no_errors	HPCAL4	HGNC	ENSG00000116983				51	0	0	50	7	12.2807
RIMKLA	0	genome.wustl.edu	37	1	42880412	42880412	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	42880412	42880412	C	A	SNP	RIMKLA	ENST00000431473	human	ensembl	74_37	+1	known	missense	c.943	p.P315T	1.000	NULL	pfam_ATP-grasp_RimK-type,pfam_GSHS_ATP-bd,pfam_ATP-grasp_DUF201-type,pfscan_ATP-grasp,tigrfam_RpS6_RimK/Lys_biosynth_LsyX	-	no_errors	RIMKLA	HGNC	ENSG00000177181				100	0	0	81	19	19
SZT2	0	genome.wustl.edu	37	1	43889992	43889992	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	43889992	43889992	C	T	SNP	SZT2	ENST00000562955	human	ensembl	74_37	+1	known	missense	c.2360	p.A787V	1.000	NULL	NULL	-	no_errors	SZT2	HGNC	ENSG00000198198				60	0	0	70	6	7.89474
ZSWIM5	0	genome.wustl.edu	37	1	45484698	45484698	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	45484698	45484698	T	C	SNP	ZSWIM5	ENST00000359600	human	ensembl	74_37	-1	known	missense	c.2986	p.T996A	1.000	NULL	pfscan_Znf_SWIM	-	no_errors	ZSWIM5	HGNC	ENSG00000162415				119	0	0	92	32	25.8065
AJAP1	0	genome.wustl.edu	37	1	4832466	4832466	+	Silent	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	4832466	4832466	G	A	SNP	AJAP1	ENST00000378190	human	ensembl	74_37	+1	known	silent	c.1044	p.T348	0.995	NULL	NULL	-	no_errors	AJAP1	HGNC	ENSG00000196581				44	0	0	38	11	22.449
ZFYVE9	0	genome.wustl.edu	37	1	52705193	52705193	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	52705193	52705193	G	A	SNP	ZFYVE9	ENST00000287727	human	ensembl	74_37	+1	known	missense	c.2104	p.A702T	1.000	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pirsf_Znf_FYVE_SARA/endofin,pfscan_Znf_FYVE-rel	pfam_DUF3480,pfam_SARA_Smad-bd,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pirsf_Znf_FYVE_SARA/endofin,pfscan_Znf_FYVE-rel	-	no_errors	ZFYVE9	HGNC	ENSG00000157077				85	0	0	74	9	10.8434
TTC4	0	genome.wustl.edu	37	1	55197241	55197241	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	55197241	55197241	G	T	SNP	TTC4	ENST00000371281	human	ensembl	74_37	+1	known	missense	c.764	p.G255V	1.000	NULL	smart_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC4	HGNC	ENSG00000243725				68	0	0	27	15	35.7143
C1orf177	0	genome.wustl.edu	37	1	55273338	55273338	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	55273338	55273338	C	T	SNP	C1orf177	ENST00000371273	human	ensembl	74_37	+1	known	missense	c.332	p.A111V	0.462	NULL	NULL	-	no_errors	C1orf177	HGNC	ENSG00000162398				30	0	0	23	6	20.6897
EFCAB7	0	genome.wustl.edu	37	1	63998360	63998360	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	63998360	63998360	G	A	SNP	EFCAB7	ENST00000371088	human	ensembl	74_37	+1	known	missense	c.419	p.R140Q	0.002	NULL	smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	EFCAB7	HGNC	ENSG00000203965				93	0	0	51	13	20.3125
PLEKHG5	0	genome.wustl.edu	37	1	6531129	6531129	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	6531129	6531129	T	C	SNP	PLEKHG5	ENST00000537245	human	ensembl	74_37	-1	known	missense	c.1550	p.Y517C	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG5	HGNC	ENSG00000171680				9	0	0	8	6	42.8571
NEGR1	0	genome.wustl.edu	37	1	72241870	72241870	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	72241870	72241870	G	A	SNP	NEGR1	ENST00000357731	human	ensembl	74_37	-1	known	missense	c.520	p.H174Y	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	NEGR1	HGNC	ENSG00000172260				67	0	0	34	5	12.8205
CCBL2	0	genome.wustl.edu	37	1	89408705	89408705	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	89408705	89408705	G	A	SNP	CCBL2	ENST00000260508	human	ensembl	74_37	-1	known	missense	c.1285	p.R429C	1.000	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase	-	no_errors	CCBL2	HGNC	ENSG00000137944				287	1	0.347222	180	24	11.7647
GBP5	0	genome.wustl.edu	37	1	89730595	89730595	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	89730595	89730595	G	T	SNP	GBP5	ENST00000343435	human	ensembl	74_37	-1	known	missense	c.923	p.P308H	1.000	pfam_Guanylate-bd_C,superfamily_Guanylate-bd_C	pfam_Guanylate-bd_N,pfam_Guanylate-bd_C,superfamily_Guanylate-bd_C,superfamily_P-loop_NTPase	-	no_errors	GBP5	HGNC	ENSG00000154451				103	0	0	70	9	11.3924
GBP5	0	genome.wustl.edu	37	1	89732816	89732816	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	89732816	89732816	T	C	SNP	GBP5	ENST00000343435	human	ensembl	74_37	-1	known	missense	c.449	p.D150G	0.985	pfam_Guanylate-bd_N,superfamily_P-loop_NTPase	pfam_Guanylate-bd_N,pfam_Guanylate-bd_C,superfamily_Guanylate-bd_C,superfamily_P-loop_NTPase	-	no_errors	GBP5	HGNC	ENSG00000154451				120	0	0	73	17	18.8889
KLHL17	0	genome.wustl.edu	37	1	900386	900386	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	900386	900386	G	A	SNP	KLHL17	ENST00000338591	human	ensembl	74_37	+1	known	missense	c.1744	p.V582M	0.993	pfam_Kelch_1,pfam_Kelch_2,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL17	HGNC	ENSG00000187961				34	0	0	40	8	16.6667
LRRC8D	0	genome.wustl.edu	37	1	90399510	90399510	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	90399510	90399510	C	T	SNP	LRRC8D	ENST00000337338	human	ensembl	74_37	+1	known	missense	c.883	p.R295C	1.000	NULL	pfam_LRR_protein-8_N,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC8D	HGNC	ENSG00000171492				47	0	0	40	5	11.1111
EPHX4	0	genome.wustl.edu	37	1	92498145	92498145	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	92498145	92498145	C	A	SNP	EPHX4	ENST00000370383	human	ensembl	74_37	+1	known	missense	c.315	p.F105L	1.000	prints_Epox_hydrolase-like	pfam_AB_hydrolase_1,prints_Epox_hydrolase-like,prints_AB_hydrolase_1	-	no_errors	EPHX4	HGNC	ENSG00000172031				99	0	0	76	4	5
RPAP2	0	genome.wustl.edu	37	1	92811469	92811469	+	Silent	SNP	A	A	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	92811469	92811469	A	G	SNP	RPAP2	ENST00000610020	human	ensembl	74_37	+1	known	silent	c.1686	p.S562	0.996	NULL	pfam_DUF408	-	no_errors	RPAP2	HGNC	ENSG00000122484				113	0	0	61	7	10.2941
ABCA4	0	genome.wustl.edu	37	1	94476454	94476454	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	94476454	94476454	C	A	SNP	ABCA4	ENST00000370225	human	ensembl	74_37	-1	known	missense	c.5616	p.W1872C	1.000	tigrfam_Rim_ABC_transpt	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,tigrfam_Rim_ABC_transpt	-	no_errors	ABCA4	HGNC	ENSG00000198691				82	0	0	67	17	20.2381
AGRN	0	genome.wustl.edu	37	1	977059	977059	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	977059	977059	G	A	SNP	AGRN	ENST00000379370	human	ensembl	74_37	+1	known	missense	c.1154	p.R385H	1.000	pfam_Kazal_dom,smart_Kazal_dom	pfam_Laminin_G,pfam_Agrin_NtA,pfam_Kazal_dom,pfam_EGF_laminin,pfam_SEA_dom,pfam_EG-like_dom,superfamily_TIMP-like_OB-fold,superfamily_ConA-like_lec_gl_sf,smart_FacI_MAC,smart_Fol_N,smart_Kazal_dom,smart_EG-like_dom,smart_EGF_laminin,smart_SEA_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Agrin_NtA,pfscan_SEA_dom	-	no_errors	AGRN	HGNC	ENSG00000188157				67	0	0	43	17	28.3333
CLSTN1	0	genome.wustl.edu	37	1	9795576	9795576	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	9795576	9795576	C	T	SNP	CLSTN1	ENST00000377298	human	ensembl	74_37	-1	known	missense	c.1832	p.R611Q	0.999	NULL	pfam_Cadherin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CLSTN1	HGNC	ENSG00000171603				172	0	0	122	42	25.6098
CUTC	0	genome.wustl.edu	37	10	101503026	101503026	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	10	101503026	101503026	C	T	SNP	CUTC	ENST00000370476	human	ensembl	74_37	+1	known	missense	c.310	p.R104C	1.000	pfam_Cu_homeostasis_CutC,superfamily_Cu_homeostasis_CutC_dom	pfam_Cu_homeostasis_CutC,superfamily_Cu_homeostasis_CutC_dom	-	no_errors	CUTC	HGNC	ENSG00000119929				174	0	0	110	44	28.5714
SFXN3	0	genome.wustl.edu	37	10	102798404	102798404	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	10	102798404	102798404	G	A	SNP	SFXN3	ENST00000224807	human	ensembl	74_37	+1	known	missense	c.788	p.R263H	0.996	pfam_Mtc,tigrfam_Mtc	pfam_Mtc,tigrfam_Mtc	-	no_errors	SFXN3	HGNC	ENSG00000107819				117	0	0	79	14	15.0538
KAZALD1	0	genome.wustl.edu	37	10	102824653	102824653	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	10	102824653	102824653	T	G	SNP	KAZALD1	ENST00000370200	human	ensembl	74_37	+1	known	missense	c.891	p.S297R	0.995	NULL	pfam_Ig_I-set,pfam_Kazal_dom,pfam_Immunoglobulin,pfam_IGFBP-like,smart_Kazal_dom,smart_Ig_sub,smart_Ig_sub2,pirsf_IGFBP_rP_mac25,pfscan_Ig-like_dom	-	no_errors	KAZALD1	HGNC	ENSG00000107821				51	0	0	64	5	7.24638
FBXW4	0	genome.wustl.edu	37	10	103370906	103370906	+	RNA	SNP	A	A	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	10	103370906	103370906	A	C	SNP	FBXW4	ENST00000470093	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FBXW4	HGNC	ENSG00000107829				16	0	0	11	3	21.4286
HPS6	0	genome.wustl.edu	37	10	103826834	103826834	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	10	103826834	103826834	C	T	SNP	HPS6	ENST00000299238	human	ensembl	74_37	+1	known	silent	c.1603	p.L535	0.761	pirsf_BLOC-2_complex_Hps6_subunit	pirsf_BLOC-2_complex_Hps6_subunit	-	no_errors	HPS6	HGNC	ENSG00000166189				74	0	0	82	26	24.0741
LDB1	0	genome.wustl.edu	37	10	103867975	103867975	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	10	103867975	103867975	C	T	SNP	LDB1	ENST00000425280	human	ensembl	74_37	-1	known	missense	c.1111	p.G371S	1.000	NULL	NULL	-	no_errors	LDB1	HGNC	ENSG00000198728				111	0	0	126	8	5.97015
SORCS1	0	genome.wustl.edu	37	10	108924061	108924061	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	10	108924061	108924061	C	T	SNP	SORCS1	ENST00000344440	human	ensembl	74_37	-1	known	missense	c.224	p.R75H	0.999	NULL	pfam_PKD_dom,superfamily_PKD_dom,smart_VPS10,pfscan_PKD_dom	-	no_errors	SORCS1	HGNC	ENSG00000108018				14	0	0	17	3	15
SORCS1	0	genome.wustl.edu	37	10	108924097	108924097	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	10	108924097	108924097	C	T	SNP	SORCS1	ENST00000344440	human	ensembl	74_37	-1	known	missense	c.188	p.G63D	0.003	NULL	pfam_PKD_dom,superfamily_PKD_dom,smart_VPS10,pfscan_PKD_dom	-	no_errors	SORCS1	HGNC	ENSG00000108018				11	0	0	8	3	27.2727
USP6NL	0	genome.wustl.edu	37	10	11505504	11505504	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	10	11505504	11505504	C	T	SNP	USP6NL	ENST00000379237	human	ensembl	74_37	-1	known	missense	c.1492	p.A498T	1.000	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	USP6NL	HGNC	ENSG00000148429				277	0	0	248	46	15.6463
PROSER2	0	genome.wustl.edu	37	10	11911830	11911830	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	10	11911830	11911830	C	T	SNP	PROSER2	ENST00000277570	human	ensembl	74_37	+1	known	missense	c.733	p.P245S	0.000	NULL	NULL	-	no_errors	PROSER2	HGNC	ENSG00000148426				9	0	0	10	3	23.0769
RAB11FIP2	0	genome.wustl.edu	37	10	119805671	119805671	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	10	119805671	119805671	T	G	SNP	RAB11FIP2	ENST00000369199	human	ensembl	74_37	-1	known	missense	c.4	p.M2L	1.000	NULL	pfam_Rab-bd_FIP-RBD,pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	RAB11FIP2	HGNC	ENSG00000107560				173	0	0	150	14	8.53659
FGFR2	0	genome.wustl.edu	37	10	123256201	123256201	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	10	123256201	123256201	C	G	SNP	FGFR2	ENST00000457416	human	ensembl	74_37	-1	known	missense	c.1711	p.G571R	1.000	pirsf_FGF_rcpt_fam,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_FGF_rcpt_fam,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	FGFR2	HGNC	ENSG00000066468				170	0	0	135	22	14.0127
NPS	0	genome.wustl.edu	37	10	129347763	129347763	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	10	129347763	129347763	C	T	SNP	NPS	ENST00000398023	human	ensembl	74_37	+1	known	missense	c.19	p.L7F	0.001	NULL	NULL	-	no_errors	NPS	HGNC	ENSG00000214285				124	0	0	76	21	21.6495
JAKMIP3	0	genome.wustl.edu	37	10	133963530	133963530	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	10	133963530	133963530	C	T	SNP	JAKMIP3	ENST00000298622	human	ensembl	74_37	+1	known	silent	c.1992	p.G664	0.996	NULL	NULL	-	no_errors	JAKMIP3	HGNC	ENSG00000188385				22	0	0	22	5	18.5185
ST8SIA6	0	genome.wustl.edu	37	10	17363280	17363280	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	10	17363280	17363280	A	C	SNP	ST8SIA6	ENST00000377602	human	ensembl	74_37	-1	known	missense	c.794	p.F265C	0.868	pfam_Glyco_trans_29,pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST8SIA6	HGNC	ENSG00000148488				125	0	0	71	18	20.2247
PLXDC2	0	genome.wustl.edu	37	10	20432315	20432315	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	10	20432315	20432315	C	T	SNP	PLXDC2	ENST00000377252	human	ensembl	74_37	+1	known	silent	c.633	p.S211	1.000	NULL	pfam_Plexin_repeat,superfamily_Plexin-like_fold,smart_Plexin-like_fold	-	no_errors	PLXDC2	HGNC	ENSG00000120594				152	0	0	70	26	27.0833
NEBL	0	genome.wustl.edu	37	10	21097514	21097514	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	10	21097514	21097514	C	A	SNP	NEBL	ENST00000377122	human	ensembl	74_37	-1	known	missense	c.2686	p.D896Y	1.000	NULL	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Nebulin_35r-motif,smart_SH3_domain,pfscan_Nebulin_35r-motif,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	NEBL	HGNC	ENSG00000078114				133	0	0	91	25	21.5517
NEBL	0	genome.wustl.edu	37	10	21139364	21139364	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	10	21139364	21139364	G	A	SNP	NEBL	ENST00000377122	human	ensembl	74_37	-1	known	missense	c.1076	p.S359L	0.511	pfam_Nebulin_35r-motif,smart_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Nebulin_35r-motif,smart_SH3_domain,pfscan_Nebulin_35r-motif,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	NEBL	HGNC	ENSG00000078114				186	0	0	96	30	23.8095
NEBL	0	genome.wustl.edu	37	10	21177122	21177122	+	Silent	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	10	21177122	21177122	G	A	SNP	NEBL	ENST00000377122	human	ensembl	74_37	-1	known	silent	c.273	p.G91	0.165	smart_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Nebulin_35r-motif,smart_SH3_domain,pfscan_Nebulin_35r-motif,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	NEBL	HGNC	ENSG00000078114				67	0	0	34	8	19.0476
SKIDA1	0	genome.wustl.edu	37	10	21805337	21805337	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	10	21805337	21805337	C	T	SNP	SKIDA1	ENST00000449193	human	ensembl	74_37	-1	known	missense	c.1415	p.C472Y	1.000	NULL	pfam_Transform_Ski,superfamily_DNA-bd_dom_put	-	no_errors	SKIDA1	HGNC	ENSG00000180592				50	0	0	50	17	25.3731
ZMYND11	0	genome.wustl.edu	37	10	255850	255850	+	Silent	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	10	255850	255850	T	C	SNP	ZMYND11	ENST00000381591	human	ensembl	74_37	+1	known	silent	c.138	p.G46	1.000	NULL	pfam_PWWP_dom,pfam_Bromodomain,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Bromodomain,smart_PWWP_dom,pfscan_PWWP_dom,pfscan_Znf_MYND,pfscan_Znf_PHD-finger,pfscan_Bromodomain	-	no_errors	ZMYND11	HGNC	ENSG00000015171				121	0	0	82	21	20.3883
GAD2	0	genome.wustl.edu	37	10	26506598	26506598	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	10	26506598	26506598	G	A	SNP	GAD2	ENST00000259271	human	ensembl	74_37	+1	known	missense	c.136	p.A46T	1.000	NULL	pfam_PyrdxlP-dep_de-COase,superfamily_PyrdxlP-dep_Trfase	-	no_errors	GAD2	HGNC	ENSG00000136750				23	0	0	16	9	36
ZNF33A	0	genome.wustl.edu	37	10	38299639	38299639	+	RNA	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	10	38299639	38299639	G	A	SNP	ZNF33A	ENST00000476504	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ZNF33A	HGNC	ENSG00000189180				56	0	0	57	9	13.6364
GDF10	0	genome.wustl.edu	37	10	48429293	48429293	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	10	48429293	48429293	C	T	SNP	GDF10	ENST00000224605	human	ensembl	74_37	-1	known	missense	c.593	p.R198H	0.149	pirsf_BMP3/GDF10	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C,pirsf_BMP3/GDF10	-	no_errors	GDF10	HGNC	ENSG00000107623				42	0	0	33	8	19.5122
DIP2C	0	genome.wustl.edu	37	10	486873	486873	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	10	486873	486873	G	T	SNP	DIP2C	ENST00000280886	human	ensembl	74_37	-1	known	missense	c.332	p.P111H	1.000	pfam_DMAP1-bd	pfam_AMP-dep_Synth/Lig,pfam_DMAP1-bd	-	no_errors	DIP2C	HGNC	ENSG00000151240				45	0	0	37	11	22.9167
NCOA4	0	genome.wustl.edu	37	10	51579211	51579211	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	10	51579211	51579211	C	T	SNP	NCOA4	ENST00000452682	human	ensembl	74_37	+1	known	missense	c.118	p.R40W	0.998	NULL	pfam_ARA70	-	no_errors	NCOA4	HGNC	ENSG00000138293				145	0	0	107	35	24.6479
FAM13C	0	genome.wustl.edu	37	10	61022345	61022345	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	10	61022345	61022345	A	C	SNP	FAM13C	ENST00000373868	human	ensembl	74_37	-1	known	missense	c.1085	p.L362R	0.000	NULL	NULL	-	no_errors	FAM13C	HGNC	ENSG00000148541				116	0	0	61	21	25.6098
SLC16A9	0	genome.wustl.edu	37	10	61414261	61414261	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	10	61414261	61414261	C	T	SNP	SLC16A9	ENST00000395347	human	ensembl	74_37	-1	known	missense	c.523	p.G175S	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A9	HGNC	ENSG00000165449				165	0	0	101	19	15.8333
ANK3	0	genome.wustl.edu	37	10	61843307	61843307	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	10	61843307	61843307	C	T	SNP	ANK3	ENST00000280772	human	ensembl	74_37	-1	known	silent	c.4143	p.Q1381	1.000	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,smart_Ankyrin_rpt,smart_ZU5,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK3	HGNC	ENSG00000151150				95	0	0	48	14	22.5806
ZNF365	0	genome.wustl.edu	37	10	64425917	64425917	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	10	64425917	64425917	A	C	SNP	ZNF365	ENST00000410046	human	ensembl	74_37	+1	known	missense	c.1249	p.N417H	0.000	NULL	NULL	-	no_errors	ZNF365	HGNC	ENSG00000138311				72	0	0	35	3	7.89474
TET1	0	genome.wustl.edu	37	10	70446170	70446170	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	10	70446170	70446170	C	T	SNP	TET1	ENST00000373644	human	ensembl	74_37	+1	known	nonsense	c.5110	p.Q1704*	1.000	NULL	pfam_Znf_CXXC,pfscan_Znf_CXXC	-	no_errors	TET1	HGNC	ENSG00000138336				144	0	0	105	16	13.2231
HK1	0	genome.wustl.edu	37	10	71129308	71129308	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	10	71129308	71129308	G	A	SNP	HK1	ENST00000448642	human	ensembl	74_37	+1	known	missense	c.908	p.G303E	1.000	pfam_Hexokinase_C	pfam_Hexokinase_C,pfam_Hexokinase_N,prints_Hexokinase	-	no_errors	HK1	HGNC	ENSG00000156515				77	0	0	70	6	7.89474
NEUROG3	0	genome.wustl.edu	37	10	71332527	71332527	+	Silent	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	10	71332527	71332527	G	A	SNP	NEUROG3	ENST00000242462	human	ensembl	74_37	-1	known	silent	c.273	p.R91	0.990	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	NEUROG3	HGNC	ENSG00000122859				37	0	0	42	5	10.6383
SEC24C	0	genome.wustl.edu	37	10	75529233	75529233	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	10	75529233	75529233	G	T	SNP	SEC24C	ENST00000339365	human	ensembl	74_37	+1	known	missense	c.2553	p.M851I	1.000	pfam_Sec23/24_helical_dom,superfamily_Sec23/24_helical_dom	pfam_Sec23/24_trunk_dom,pfam_Sec23/24_helical_dom,pfam_Sec23_24_beta_S,pfam_Znf_Sec23_Sec24,pfam_Gelsolin_dom,superfamily_Sec23/24_helical_dom,superfamily_Znf_Sec23_Sec24	-	no_errors	SEC24C	HGNC	ENSG00000176986				49	0	0	58	8	12.1212
ITIH2	0	genome.wustl.edu	37	10	7788613	7788613	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	10	7788613	7788613	C	A	SNP	ITIH2	ENST00000358415	human	ensembl	74_37	+1	known	missense	c.2639	p.P880H	0.988	pfam_ITI_HC_C	pfam_ITI_HC_C,pfam_VIT,pfam_VWF_A,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	ITIH2	HGNC	ENSG00000151655				34	0	0	26	5	16.129
MBL1P	0	genome.wustl.edu	37	10	81667509	81667509	+	RNA	SNP	A	A	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	10	81667509	81667509	A	G	SNP	MBL1P	ENST00000453174	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.972	-	-	-	no_errors	MBL1P	HGNC	ENSG00000242600				103	0	0	72	16	18.1818
ACTA2	0	genome.wustl.edu	37	10	90708573	90708573	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	10	90708573	90708573	G	A	SNP	ACTA2	ENST00000224784	human	ensembl	74_37	-1	known	missense	c.115	p.R39C	0.999	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,smart_Actin-related,prints_Actin-related	-	no_errors	ACTA2	HGNC	ENSG00000107796				146	0	0	141	17	10.7595
IFIT1B	0	genome.wustl.edu	37	10	91143709	91143709	+	Silent	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	10	91143709	91143709	T	C	SNP	IFIT1B	ENST00000371809	human	ensembl	74_37	+1	known	silent	c.639	p.N213	0.968	pfscan_TPR-contain_dom	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	IFIT1B	HGNC	ENSG00000204010				413	0	0	299	91	23.3333
IDE	0	genome.wustl.edu	37	10	94294397	94294397	+	Silent	SNP	A	A	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	10	94294397	94294397	A	G	SNP	IDE	ENST00000265986	human	ensembl	74_37	-1	known	silent	c.429	p.S143	1.000	pfam_Pept_M16_N,superfamily_Metalloenz_LuxS/M16	pfam_Pept_M16_N,pfam_Peptidase_M16_C,superfamily_Metalloenz_LuxS/M16	-	no_errors	IDE	HGNC	ENSG00000119912				133	0	0	87	23	20.9091
PLCE1	0	genome.wustl.edu	37	10	96013971	96013971	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	10	96013971	96013971	G	A	SNP	PLCE1	ENST00000260766	human	ensembl	74_37	+1	known	missense	c.3304	p.D1102N	1.000	NULL	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_Ras-assoc,pfam_RasGRF_CDC25,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_Ras_GEF_dom,superfamily_C2_dom,smart_RasGRF_CDC25,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,smart_Ras-assoc,pfscan_C2_dom,pfscan_Ras-assoc,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,pfscan_RasGRF_CDC25,prints_Pinositol_PLipase_C	-	no_errors	PLCE1	HGNC	ENSG00000138193				54	0	0	52	13	20
NOC3L	0	genome.wustl.edu	37	10	96116929	96116929	+	Splice_Site	SNP	A	A	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	10	96116929	96116929	A	G	SNP	NOC3L	ENST00000371350	human	ensembl	74_37	-1	known	splice_site	c.508+2	e4+2	0.990	-	-	-	no_errors	NOC3L	HGNC	ENSG00000173145				133	1	0.746269	90	14	13.4615
CNTN5	0	genome.wustl.edu	37	11	100211267	100211267	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	11	100211267	100211267	G	A	SNP	CNTN5	ENST00000279463	human	ensembl	74_37	+1	known	missense	c.2803	p.V935I	0.001	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CNTN5	HGNC	ENSG00000149972				36	0	0	26	6	18.75
AMPD3	0	genome.wustl.edu	37	11	10483162	10483162	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	11	10483162	10483162	G	T	SNP	AMPD3	ENST00000396553	human	ensembl	74_37	+1	known	missense	c.96	p.E32D	1.000	pirsf_AMP_deaminase	pfam_A/AMP_deaminase_dom,pirsf_AMP_deaminase,tigrfam_AMP_deaminase	-	no_errors	AMPD3	HGNC	ENSG00000133805				105	0	0	79	24	23.301
MRVI1	0	genome.wustl.edu	37	11	10673666	10673666	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	11	10673666	10673666	C	T	SNP	MRVI1	ENST00000421747	human	ensembl	74_37	-1	known	missense	c.104	p.R35H	0.049	NULL	pfam_MRVI1	-	no_errors	MRVI1	HGNC	ENSG00000072952				23	0	0	25	3	10.7143
ATM	0	genome.wustl.edu	37	11	108216545	108216545	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	11	108216545	108216545	C	T	SNP	ATM	ENST00000278616	human	ensembl	74_37	+1	known	missense	c.8494	p.R2832C	1.000	pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_TAN,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATM	HGNC	ENSG00000149311				241	0	0	133	34	20.3593
EXPH5	0	genome.wustl.edu	37	11	108381075	108381075	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	11	108381075	108381075	G	A	SNP	EXPH5	ENST00000265843	human	ensembl	74_37	-1	known	missense	c.5159	p.T1720I	0.001	NULL	superfamily_Znf_FYVE_PHD,pfscan_Znf_FYVE-typ	-	no_errors	EXPH5	HGNC	ENSG00000110723				164	0	0	154	34	18.0851
RBM7	0	genome.wustl.edu	37	11	114278312	114278312	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	11	114278312	114278312	C	T	SNP	RBM7	ENST00000540163	human	ensembl	74_37	+1	known	missense	c.584	p.S195L	0.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM7	HGNC	ENSG00000076053				107	0	0	75	22	22.6804
KMT2A	0	genome.wustl.edu	37	11	118344459	118344459	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	11	118344459	118344459	G	A	SNP	KMT2A	ENST00000389506	human	ensembl	74_37	+1	known	missense	c.2585	p.R862Q	0.998	pirsf_MeTrfase_trithorax	pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_Bromodomain,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pirsf_MeTrfase_trithorax,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC,pfscan_Bromodomain	-	no_errors	KMT2A	HGNC	ENSG00000118058				44	0	0	29	12	29.2683
VWA5A	0	genome.wustl.edu	37	11	123994983	123994983	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	11	123994983	123994983	A	G	SNP	VWA5A	ENST00000392748	human	ensembl	74_37	+1	known	missense	c.1204	p.S402G	0.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VIT,pfam_VWF_A,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	VWA5A	HGNC	ENSG00000110002				52	0	0	49	3	5.76923
OR8D1	0	genome.wustl.edu	37	11	124179741	124179741	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	11	124179741	124179741	T	G	SNP	OR8D1	ENST00000357821	human	ensembl	74_37	-1	known	missense	c.922	p.K308Q	0.005	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8D1	HGNC	ENSG00000196341				82	0	0	55	10	15.3846
ST14	0	genome.wustl.edu	37	11	130066232	130066232	+	Splice_Site	SNP	A	A	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	11	130066232	130066232	A	G	SNP	ST14	ENST00000278742	human	ensembl	74_37	+1	known	splice_site	c.1114-2	e10-2	1.000	-	-	-	no_errors	ST14	HGNC	ENSG00000149418				15	0	0	6	2	25
SPON1	0	genome.wustl.edu	37	11	14156984	14156984	+	RNA	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	11	14156984	14156984	C	T	SNP	SPON1	ENST00000310358	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SPON1	HGNC	ENSG00000152268				114	0	0	86	16	15.6863
SPON1	0	genome.wustl.edu	37	11	14156987	14156987	+	RNA	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	11	14156987	14156987	C	T	SNP	SPON1	ENST00000310358	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SPON1	HGNC	ENSG00000152268				116	1	0.854701	79	27	25.4717
ABCC8	0	genome.wustl.edu	37	11	17428671	17428671	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	11	17428671	17428671	C	T	SNP	ABCC8	ENST00000302539	human	ensembl	74_37	-1	known	missense	c.2929	p.A977T	0.732	superfamily_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC1_TM_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,prints_Sulphorea_rcpt,prints_Surea_rcpt-1,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCC8	HGNC	ENSG00000006071				19	0	0	23	8	25.8065
CTSD	0	genome.wustl.edu	37	11	1774897	1774897	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	11	1774897	1774897	A	G	SNP	CTSD	ENST00000236671	human	ensembl	74_37	-1	known	missense	c.1075	p.S359P	0.942	pfam_Aspartic_peptidase,superfamily_Peptidase_aspartic_dom	pfam_Aspartic_peptidase,pfam_Aspartic_peptidase_N,superfamily_Peptidase_aspartic_dom,prints_Aspartic_peptidase	-	no_errors	CTSD	HGNC	ENSG00000117984				38	0	0	51	3	5.55556
SPTY2D1-AS1	0	genome.wustl.edu	37	11	18631308	18631308	+	RNA	SNP	C	C	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	11	18631308	18631308	C	A	SNP	SPTY2D1-AS1	ENST00000501599	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SPTY2D1-AS1	HGNC	ENSG00000247595				15	0	0	20	5	20
KCNA4	0	genome.wustl.edu	37	11	30033234	30033234	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	11	30033234	30033234	T	G	SNP	KCNA4	ENST00000328224	human	ensembl	74_37	-1	known	missense	c.992	p.E331A	1.000	prints_K_chnl_volt-dep_Kv1	pfam_K_chnl_volt-dep_Kv1.4_TID,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.4,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA4	HGNC	ENSG00000182255				89	0	0	68	20	22.7273
FSHB	0	genome.wustl.edu	37	11	30255240	30255240	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	11	30255240	30255240	C	A	SNP	FSHB	ENST00000254122	human	ensembl	74_37	+1	known	missense	c.283	p.P95T	1.000	pfam_Cys_knot,smart_Gonadotropin_bsu	pfam_Cys_knot,smart_Gonadotropin_bsu	-	no_errors	FSHB	HGNC	ENSG00000131808				77	0	0	67	6	8.21918
TP53I11	0	genome.wustl.edu	37	11	44956568	44956568	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	11	44956568	44956568	A	G	SNP	TP53I11	ENST00000308212	human	ensembl	74_37	-1	known	missense	c.437	p.V146A	1.000	NULL	NULL	-	no_errors	TP53I11	HGNC	ENSG00000175274				113	0	0	102	9	8.10811
GYLTL1B	0	genome.wustl.edu	37	11	45949811	45949811	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	11	45949811	45949811	C	T	SNP	GYLTL1B	ENST00000325468	human	ensembl	74_37	+1	known	missense	c.1838	p.A613V	0.989	NULL	pfam_Glyco_trans_8	-	no_errors	GYLTL1B	HGNC	ENSG00000165905				186	0	0	169	14	7.65027
OR52I1	0	genome.wustl.edu	37	11	4615645	4615645	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	11	4615645	4615645	G	A	SNP	OR52I1	ENST00000530443	human	ensembl	74_37	+1	known	missense	c.377	p.R126H	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR52I1	HGNC	ENSG00000232268				38	0	0	41	6	12.766
ARHGAP1	0	genome.wustl.edu	37	11	46700719	46700719	+	Silent	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	11	46700719	46700719	G	A	SNP	ARHGAP1	ENST00000311956	human	ensembl	74_37	-1	known	silent	c.1188	p.F396	0.217	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_CRAL-TRIO_dom,superfamily_Rho_GTPase_activation_prot,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,smart_RhoGAP_dom,pfscan_CRAL-TRIO_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP1	HGNC	ENSG00000175220				116	0	0	123	29	19.0789
CKAP5	0	genome.wustl.edu	37	11	46829626	46829626	+	Silent	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	11	46829626	46829626	T	C	SNP	CKAP5	ENST00000415402	human	ensembl	74_37	-1	known	silent	c.933	p.K311	0.998	pfam_CLASP_N_dom,superfamily_ARM-type_fold	pfam_CLASP_N_dom,pfam_HEAT,superfamily_ARM-type_fold,superfamily_Homing_endonucl,pfscan_HEAT_type_2	-	no_errors	CKAP5	HGNC	ENSG00000175216				347	0	0	234	49	17.3145
SLC39A13	0	genome.wustl.edu	37	11	47431758	47431758	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	11	47431758	47431758	G	A	SNP	SLC39A13	ENST00000362021	human	ensembl	74_37	+1	known	missense	c.113	p.R38Q	0.531	NULL	pfam_ZIP	-	no_errors	SLC39A13	HGNC	ENSG00000165915				69	0	0	96	18	15.7895
C1QTNF4	0	genome.wustl.edu	37	11	47611775	47611775	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	11	47611775	47611775	C	T	SNP	C1QTNF4	ENST00000302514	human	ensembl	74_37	-1	known	silent	c.588	p.P196	0.940	pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q	pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,prints_C1q,pfscan_C1q	-	no_errors	C1QTNF4	HGNC	ENSG00000172247				10	0	0	11	4	26.6667
OR4S1	0	genome.wustl.edu	37	11	48328082	48328082	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	11	48328082	48328082	A	G	SNP	OR4S1	ENST00000319988	human	ensembl	74_37	+1	known	missense	c.308	p.H103R	0.974	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4S1	HGNC	ENSG00000176555				124	0	0	112	10	8.19672
OR51B6	0	genome.wustl.edu	37	11	5373205	5373205	+	Silent	SNP	A	A	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	11	5373205	5373205	A	G	SNP	OR51B6	ENST00000380219	human	ensembl	74_37	+1	known	silent	c.468	p.P156	0.205	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	-	no_errors	OR51B6	HGNC	ENSG00000176239				131	0	0	101	11	9.82143
OR51I2	0	genome.wustl.edu	37	11	5475541	5475541	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	11	5475541	5475541	C	A	SNP	OR51I2	ENST00000341449	human	ensembl	74_37	+1	known	missense	c.823	p.L275I	0.480	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR51I2	HGNC	ENSG00000187918				230	0	0	174	20	10.3093
OR8I2	0	genome.wustl.edu	37	11	55861106	55861106	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	11	55861106	55861106	T	C	SNP	OR8I2	ENST00000302124	human	ensembl	74_37	+1	known	missense	c.323	p.V108A	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8I2	HGNC	ENSG00000172154				158	0	0	107	30	21.8978
OR52B6	0	genome.wustl.edu	37	11	5602431	5602431	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	11	5602431	5602431	T	A	SNP	OR52B6	ENST00000345043	human	ensembl	74_37	+1	known	missense	c.325	p.Y109N	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR52B6	HGNC	ENSG00000187747				110	0	0	103	21	16.9355
OR8U1	0	genome.wustl.edu	37	11	56143123	56143123	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	11	56143123	56143123	G	T	SNP	OR8U1	ENST00000302270	human	ensembl	74_37	+1	known	missense	c.24	p.Q8H	0.001	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8U1	HGNC	ENSG00000172199				123	1	0.806452	96	16	14.2857
RASSF7	0	genome.wustl.edu	37	11	563636	563636	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	11	563636	563636	G	T	SNP	RASSF7	ENST00000344375	human	ensembl	74_37	+1	known	missense	c.1113	p.Q371H	0.034	NULL	pfam_Ras-assoc,smart_Ras-assoc,pfscan_Ras-assoc	-	no_errors	RASSF7	HGNC	ENSG00000099849				26	0	0	22	8	26.6667
SLC43A3	0	genome.wustl.edu	37	11	57185246	57185246	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	11	57185246	57185246	G	T	SNP	SLC43A3	ENST00000352187	human	ensembl	74_37	-1	known	missense	c.646	p.P216T	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC43A3	HGNC	ENSG00000134802				69	0	0	75	9	10.7143
OR52E4	0	genome.wustl.edu	37	11	5906226	5906226	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	11	5906226	5906226	G	A	SNP	OR52E4	ENST00000316987	human	ensembl	74_37	+1	known	missense	c.704	p.R235Q	0.009	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR52E4	HGNC	ENSG00000180974				161	0	0	174	21	10.7692
TCN1	0	genome.wustl.edu	37	11	59622135	59622135	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	11	59622135	59622135	T	C	SNP	TCN1	ENST00000257264	human	ensembl	74_37	-1	known	missense	c.1111	p.T371A	0.007	NULL	pfam_Cbl-bd_transpt_euk	-	no_errors	TCN1	HGNC	ENSG00000134827				109	0	0	90	8	8.16327
TMEM109	0	genome.wustl.edu	37	11	60689416	60689416	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	11	60689416	60689416	G	A	SNP	TMEM109	ENST00000227525	human	ensembl	74_37	+1	known	missense	c.511	p.G171S	0.939	NULL	NULL	-	no_errors	TMEM109	HGNC	ENSG00000110108				115	0	0	128	11	7.91367
INCENP	0	genome.wustl.edu	37	11	61912511	61912511	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	11	61912511	61912511	C	T	SNP	INCENP	ENST00000394818	human	ensembl	74_37	+1	known	missense	c.1663	p.R555C	1.000	NULL	pfam_INCENP_N,pfam_Inner_centromere_prot_ARK-bd	-	no_errors	INCENP	HGNC	ENSG00000149503				35	0	0	46	10	17.8571
CCKBR	0	genome.wustl.edu	37	11	6292358	6292358	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	11	6292358	6292358	C	T	SNP	CCKBR	ENST00000525462	human	ensembl	74_37	+1	known	missense	c.1136	p.T379M	0.945	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Gastrin_rcpt,prints_Cholcskin_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	CCKBR	HGNC	ENSG00000110148				83	0	0	93	21	18.4211
ATL3	0	genome.wustl.edu	37	11	63398579	63398579	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	11	63398579	63398579	C	A	SNP	ATL3	ENST00000332645	human	ensembl	74_37	-1	known	missense	c.1553	p.R518M	0.052	NULL	pfam_Guanylate-bd_N,pfam_Guanylate-bd_C,superfamily_Guanylate-bd_C,superfamily_P-loop_NTPase	-	no_errors	ATL3	HGNC	ENSG00000184743				93	0	0	96	8	7.69231
ATL3	0	genome.wustl.edu	37	11	63398938	63398938	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	11	63398938	63398938	A	C	SNP	ATL3	ENST00000332645	human	ensembl	74_37	-1	known	missense	c.1194	p.C398W	1.000	pfam_Guanylate-bd_C,superfamily_Guanylate-bd_C	pfam_Guanylate-bd_N,pfam_Guanylate-bd_C,superfamily_Guanylate-bd_C,superfamily_P-loop_NTPase	-	no_errors	ATL3	HGNC	ENSG00000184743				39	0	0	25	12	32.4324
PLCB3	0	genome.wustl.edu	37	11	64028918	64028918	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	11	64028918	64028918	T	G	SNP	PLCB3	ENST00000279230	human	ensembl	74_37	+1	known	missense	c.1778	p.L593R	0.778	pirsf_PLC-beta,pfam_PLipase_C_Pinositol-sp_Y,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_Pinositol-sp_Y,pfscan_PLipase_C_Pinositol-sp_Y	pirsf_PLC-beta,pfam_PLC-beta_C,pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,pfam_PLC-beta_CS,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,prints_Pinositol_PLipase_C,pfscan_C2_dom,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCB3	HGNC	ENSG00000149782				77	0	0	78	20	20.4082
DNHD1	0	genome.wustl.edu	37	11	6520167	6520167	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	11	6520167	6520167	A	T	SNP	DNHD1	ENST00000254579	human	ensembl	74_37	+1	known	missense	c.722	p.E241V	0.000	NULL	pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom,superfamily_P-loop_NTPase,superfamily_t-SNARE	-	no_errors	DNHD1	HGNC	ENSG00000179532				79	0	0	52	10	16.129
MUS81	0	genome.wustl.edu	37	11	65629422	65629422	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	11	65629422	65629422	C	T	SNP	MUS81	ENST00000308110	human	ensembl	74_37	+1	known	missense	c.356	p.P119L	0.001	NULL	pfam_ERCC4_domain,superfamily_Restrct_endonuc-II-like,superfamily_DNA_pol_b-like_N,smart_ERCC4_domain	-	no_errors	MUS81	HGNC	ENSG00000172732				18	0	0	15	6	28.5714
RBM4	0	genome.wustl.edu	37	11	66411100	66411100	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	11	66411100	66411100	C	T	SNP	RBM4	ENST00000310092	human	ensembl	74_37	+1	known	missense	c.592	p.R198C	1.000	NULL	pfam_RRM_dom,pfam_Znf_CCHC,smart_RRM_dom,smart_Znf_CCHC,pfscan_Znf_CCHC,pfscan_RRM_dom	-	no_errors	RBM4	HGNC	ENSG00000173933				68	0	0	58	22	27.5
ADRBK1	0	genome.wustl.edu	37	11	67048584	67048584	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	11	67048584	67048584	C	T	SNP	ADRBK1	ENST00000308595	human	ensembl	74_37	+1	known	silent	c.576	p.S192	0.989	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_RGS_dom,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Regulat_G_prot_signal_superfam,pfscan_Prot_kinase_dom,prints_GPCR_kinase	-	no_errors	ADRBK1	HGNC	ENSG00000173020				75	0	0	61	19	23.75
ANO1	0	genome.wustl.edu	37	11	70009450	70009450	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	11	70009450	70009450	A	C	SNP	ANO1	ENST00000316296	human	ensembl	74_37	+1	known	missense	c.1780	p.T594P	0.652	NULL	pfam_Anoctamin	-	no_errors	ANO1	HGNC	ENSG00000131620				43	0	0	48	3	5.88235
SLCO2B1	0	genome.wustl.edu	37	11	74876908	74876908	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	11	74876908	74876908	G	T	SNP	SLCO2B1	ENST00000289575	human	ensembl	74_37	+1	known	missense	c.362	p.G121V	1.000	pfam_OA_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	-	no_errors	SLCO2B1	HGNC	ENSG00000137491				192	0	0	201	11	5.18868
USP35	0	genome.wustl.edu	37	11	77916960	77916960	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	11	77916960	77916960	G	A	SNP	USP35	ENST00000529308	human	ensembl	74_37	+1	known	missense	c.1270	p.E424K	1.000	superfamily_ARM-type_fold	pfam_Peptidase_C19/C67,superfamily_ARM-type_fold,pfscan_Peptidase_C19/C67	-	no_errors	USP35	HGNC	ENSG00000118369				280	0	0	299	16	5.07937
GAB2	0	genome.wustl.edu	37	11	77936163	77936163	+	Silent	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	11	77936163	77936163	G	A	SNP	GAB2	ENST00000361507	human	ensembl	74_37	-1	known	silent	c.1293	p.G431	0.022	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	GAB2	HGNC	ENSG00000033327				87	0	0	98	9	8.41121
CCDC89	0	genome.wustl.edu	37	11	85396904	85396904	+	Silent	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	11	85396904	85396904	G	A	SNP	CCDC89	ENST00000316398	human	ensembl	74_37	-1	known	silent	c.270	p.R90	1.000	NULL	NULL	-	no_errors	CCDC89	HGNC	ENSG00000179071				62	0	0	58	8	12.1212
NAALAD2	0	genome.wustl.edu	37	11	89883713	89883713	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	11	89883713	89883713	G	T	SNP	NAALAD2	ENST00000534061	human	ensembl	74_37	+1	known	missense	c.547	p.G183C	0.938	pfam_Protease-assoc_domain	pfam_TFR-like_dimer_dom,pfam_Peptidase_M28,pfam_Protease-assoc_domain,superfamily_TFR-like_dimer_dom	-	no_errors	NAALAD2	HGNC	ENSG00000077616				125	0	0	42	16	27.5862
FAT3	0	genome.wustl.edu	37	11	92087030	92087030	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	11	92087030	92087030	G	T	SNP	FAT3	ENST00000298047	human	ensembl	74_37	+1	known	missense	c.1752	p.Q584H	0.999	superfamily_Cadherin-like	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323				62	0	0	36	13	26.5306
GNPTAB	0	genome.wustl.edu	37	12	102164266	102164266	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	12	102164266	102164266	C	T	SNP	GNPTAB	ENST00000299314	human	ensembl	74_37	-1	known	missense	c.1031	p.R344Q	1.000	pfam_DUF3184	pfam_DMAP1-bd,pfam_Notch_dom,pfam_DUF3184,superfamily_Notch_dom,smart_Notch_dom,pfscan_EF_hand_dom,pfscan_Notch_dom	-	no_errors	GNPTAB	HGNC	ENSG00000111670				49	0	0	41	8	16.3265
DRAM1	0	genome.wustl.edu	37	12	102301997	102301997	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	12	102301997	102301997	G	A	SNP	DRAM1	ENST00000258534	human	ensembl	74_37	+1	known	missense	c.376	p.A126T	0.959	pfam_Frag1/DRAM/Sfk1	pfam_Frag1/DRAM/Sfk1	-	no_errors	DRAM1	HGNC	ENSG00000136048				158	1	0.628931	180	10	5.26316
STAB2	0	genome.wustl.edu	37	12	104155080	104155080	+	Silent	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	12	104155080	104155080	G	A	SNP	STAB2	ENST00000388887	human	ensembl	74_37	+1	known	silent	c.7251	p.T2417	0.950	superfamily_FAS1_domain,smart_FAS1_domain,pfscan_FAS1_domain	pfam_FAS1_domain,pfam_Link,superfamily_C-type_lectin_fold,superfamily_FAS1_domain,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_EGF_laminin,smart_EGF-like_Ca-bd_dom,smart_FAS1_domain,smart_Link,pfscan_EG-like_dom,pfscan_FAS1_domain,pfscan_Link	-	no_errors	STAB2	HGNC	ENSG00000136011				143	0	0	111	31	21.831
APPL2	0	genome.wustl.edu	37	12	105601755	105601755	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	12	105601755	105601755	A	G	SNP	APPL2	ENST00000549974	human	ensembl	74_37	-1	known	missense	c.110	p.M37T	0.992	NULL	NULL	-	no_errors	APPL2	HGNC	ENSG00000136044				64	0	0	58	28	32.5581
ACACB	0	genome.wustl.edu	37	12	109644517	109644517	+	Silent	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	12	109644517	109644517	T	C	SNP	ACACB	ENST00000338432	human	ensembl	74_37	+1	known	silent	c.2916	p.A972	0.002	pfam_AcCoA_COase_cen	pfam_AcCoA_COase_cen,pfam_Carboxyl_trans,pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,superfamily_PreATP-grasp_dom,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_COA_CT_N,pfscan_COA_CT_C,pfscan_Biotin_lipoyl	-	no_errors	ACACB	HGNC	ENSG00000076555				298	0	0	253	14	5.24345
ACACB	0	genome.wustl.edu	37	12	109677741	109677741	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	12	109677741	109677741	A	C	SNP	ACACB	ENST00000338432	human	ensembl	74_37	+1	known	missense	c.4769	p.N1590T	1.000	pfam_AcCoA_COase_cen	pfam_AcCoA_COase_cen,pfam_Carboxyl_trans,pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,superfamily_PreATP-grasp_dom,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_COA_CT_N,pfscan_COA_CT_C,pfscan_Biotin_lipoyl	-	no_errors	ACACB	HGNC	ENSG00000076555				82	0	0	96	7	6.79612
ATXN2	0	genome.wustl.edu	37	12	111923108	111923108	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	12	111923108	111923108	T	C	SNP	ATXN2	ENST00000377617	human	ensembl	74_37	-1	known	missense	c.2965	p.M989V	1.000	NULL	pfam_LsmAD_domain,pfam_Ataxin-2_C,superfamily_LSM_dom	-	no_errors	ATXN2	HGNC	ENSG00000204842				242	0	0	139	65	31.8627
OAS1	0	genome.wustl.edu	37	12	113348918	113348918	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	12	113348918	113348918	A	G	SNP	OAS1	ENST00000445409	human	ensembl	74_37	+1	known	missense	c.532	p.T178A	0.000	pfam_2-5-oligoAdlate_synth_1_dom2/C	pfam_2-5-oligoAdlate_synth_1_dom2/C,pfam_Nucleotidyltransferase,pfscan_2-5-oligoadenylate_synth_N	-	no_errors	OAS1	HGNC	ENSG00000089127				83	0	0	94	8	7.84314
RASAL1	0	genome.wustl.edu	37	12	113543607	113543607	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	12	113543607	113543607	G	A	SNP	RASAL1	ENST00000546530	human	ensembl	74_37	-1	known	missense	c.1745	p.A582V	0.000	pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,smart_RasGAP,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_RasGAP,pfam_C2_dom,pfam_Znf_Btk_motif,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_C2_dom,smart_RasGAP,smart_Pleckstrin_homology,smart_Znf_Btk_motif,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_Znf_Btk_motif,pfscan_RasGAP	-	no_errors	RASAL1	HGNC	ENSG00000111344				112	0	0	98	9	8.41121
KSR2	0	genome.wustl.edu	37	12	118105367	118105367	+	Silent	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	12	118105367	118105367	G	A	SNP	KSR2	ENST00000339824	human	ensembl	74_37	-1	known	silent	c.1083	p.S361	0.999	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom	-	no_errors	KSR2	HGNC	ENSG00000171435				35	0	0	26	8	23.5294
CIT	0	genome.wustl.edu	37	12	120142226	120142226	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	12	120142226	120142226	G	T	SNP	CIT	ENST00000261833	human	ensembl	74_37	-1	known	missense	c.5120	p.P1707H	1.000	pfam_Citron,smart_Citron,pirsf_Citron_Rho-interacting_kinase	pfam_Citron,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_HR1_rho-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,pirsf_Citron_Rho-interacting_kinase,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom	-	no_errors	CIT	HGNC	ENSG00000122966				95	0	0	95	5	5
LRP6	0	genome.wustl.edu	37	12	12278295	12278295	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	12	12278295	12278295	G	A	SNP	LRP6	ENST00000261349	human	ensembl	74_37	-1	known	nonsense	c.4384	p.R1462*	1.000	pirsf_Low_density_Lipo_rcpt-rel_p5/6	pirsf_Low_density_Lipo_rcpt-rel_p5/6,pfam_LDLR_classB_rpt,pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDLR_classB_rpt,smart_EG-like_dom,smart_LDrepeatLR_classA_rpt,prints_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP6	HGNC	ENSG00000070018				80	0	0	32	3	8.57143
KNTC1	0	genome.wustl.edu	37	12	123082320	123082320	+	Silent	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	12	123082320	123082320	T	C	SNP	KNTC1	ENST00000333479	human	ensembl	74_37	+1	known	silent	c.4398	p.I1466	0.938	NULL	pfam_RZZ-complex_KNTC1/ROD_C,superfamily_Quino_amine_DH_bsu,superfamily_WD40_repeat_dom,superfamily_PAH	-	no_errors	KNTC1	HGNC	ENSG00000184445				85	0	0	81	12	12.9032
HIP1R	0	genome.wustl.edu	37	12	123339495	123339495	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	12	123339495	123339495	C	T	SNP	HIP1R	ENST00000253083	human	ensembl	74_37	+1	known	silent	c.762	p.H254	0.169	pfam_ANTH_dom	pfam_ANTH_dom,pfam_ILWEQ_dom,pfam_Epsin_dom_N,superfamily_ENTH_VHS,smart_Epsin-like_N,smart_ILWEQ_dom,pfscan_Epsin-like_N,pfscan_ILWEQ_dom	-	no_errors	HIP1R	HGNC	ENSG00000130787				94	0	0	115	37	24.3421
DNAH10	0	genome.wustl.edu	37	12	124297909	124297909	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	12	124297909	124297909	C	T	SNP	DNAH10	ENST00000409039	human	ensembl	74_37	+1	known	nonsense	c.2989	p.R997*	0.923	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_PyrdxlP-dep_Trfase,smart_AAA+_ATPase	-	no_errors	DNAH10	HGNC	ENSG00000197653				143	0	0	71	44	38.2609
NCOR2	0	genome.wustl.edu	37	12	124862855	124862855	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	12	124862855	124862855	C	T	SNP	NCOR2	ENST00000356219	human	ensembl	74_37	-1	known	missense	c.2095	p.V699M	0.433	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR2	HGNC	ENSG00000196498				57	0	0	65	29	30.8511
TMEM132D	0	genome.wustl.edu	37	12	130184785	130184785	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	12	130184785	130184785	G	A	SNP	TMEM132D	ENST00000422113	human	ensembl	74_37	-1	known	missense	c.538	p.R180W	0.008	NULL	NULL	-	no_errors	TMEM132D	HGNC	ENSG00000151952				36	0	0	42	8	16
GRIN2B	0	genome.wustl.edu	37	12	13716547	13716547	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	12	13716547	13716547	G	A	SNP	GRIN2B	ENST00000609686	human	ensembl	74_37	-1	known	missense	c.3625	p.R1209W	0.147	pfam_NMDAR2_C	pfam_NMDAR2_C,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2B	HGNC	ENSG00000273079				98	0	0	111	16	12.5984
SLCO1B7	0	genome.wustl.edu	37	12	21207464	21207464	+	Nonsense_Mutation	SNP	A	A	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	12	21207464	21207464	A	T	SNP	SLCO1B7	ENST00000554957	human	ensembl	74_37	+1	known	nonsense	c.1576	p.R526*	0.987	pfam_OA_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO1B7	HGNC	ENSG00000205754				117	0	0	72	10	12.1951
SOX5	0	genome.wustl.edu	37	12	23728680	23728680	+	Silent	SNP	A	A	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	12	23728680	23728680	A	C	SNP	SOX5	ENST00000451604	human	ensembl	74_37	-1	known	silent	c.1257	p.A419	0.999	NULL	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	SOX5	HGNC	ENSG00000134532				175	0	0	132	12	8.33333
YARS2	0	genome.wustl.edu	37	12	32908133	32908133	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	12	32908133	32908133	C	T	SNP	YARS2	ENST00000324868	human	ensembl	74_37	-1	known	missense	c.676	p.A226T	1.000	pfam_aa-tRNA-synth_Ic,prints_Tyr-tRNA-ligase,tigrfam_Tyr-tRNA-ligase	pfam_aa-tRNA-synth_Ic,prints_Tyr-tRNA-ligase,tigrfam_Tyr-tRNA-ligase	-	no_errors	YARS2	HGNC	ENSG00000139131				161	1	0.617284	177	45	20.2703
SYT10	0	genome.wustl.edu	37	12	33532785	33532785	+	Silent	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	12	33532785	33532785	G	A	SNP	SYT10	ENST00000228567	human	ensembl	74_37	-1	known	silent	c.1482	p.H494	1.000	superfamily_C2_dom	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom,prints_Synaptotagmin,prints_C2_dom	-	no_errors	SYT10	HGNC	ENSG00000110975				113	0	0	105	6	5.40541
LRRK2	0	genome.wustl.edu	37	12	40677742	40677742	+	Silent	SNP	A	A	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	12	40677742	40677742	A	G	SNP	LRRK2	ENST00000298910	human	ensembl	74_37	+1	known	silent	c.2307	p.Q769	0.974	superfamily_ARM-type_fold	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_MIRO-like,pfam_Small_GTPase,pfam_Leu-rich_rpt,pfam_Small_GTPase_ARF/SAR,superfamily_Kinase-like_dom,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,superfamily_WD40_repeat_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Small_GTPase_Rab_type,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,prints_Small_GTPase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	LRRK2	HGNC	ENSG00000188906				123	0	0	70	25	26.3158
LRRK2	0	genome.wustl.edu	37	12	40734203	40734203	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	12	40734203	40734203	G	A	SNP	LRRK2	ENST00000298910	human	ensembl	74_37	+1	known	missense	c.6056	p.G2019D	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_MIRO-like,pfam_Small_GTPase,pfam_Leu-rich_rpt,pfam_Small_GTPase_ARF/SAR,superfamily_Kinase-like_dom,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,superfamily_WD40_repeat_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Small_GTPase_Rab_type,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,prints_Small_GTPase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	LRRK2	HGNC	ENSG00000188906				178	0	0	131	8	5.7554
KMT2D	0	genome.wustl.edu	37	12	49444339	49444339	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	12	49444339	49444339	G	A	SNP	KMT2D	ENST00000301067	human	ensembl	74_37	-1	known	missense	c.3032	p.P1011L	0.026	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2D	HGNC	ENSG00000167548				71	0	0	61	5	7.57576
KCNH3	0	genome.wustl.edu	37	12	49943878	49943878	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	12	49943878	49943878	C	A	SNP	KCNH3	ENST00000257981	human	ensembl	74_37	+1	known	missense	c.1684	p.P562T	1.000	superfamily_cNMP-bd-like	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,pfam_cNMP-bd_dom,pfam_PAS_4,pfam_PAS_fold,pfam_PAS_fold_3,superfamily_cNMP-bd-like,superfamily_PAS,smart_PAC,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ELK,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,pfscan_PAS,pfscan_PAS-assoc_C,tigrfam_PAS	-	no_errors	KCNH3	HGNC	ENSG00000135519				27	0	0	34	5	12.8205
RACGAP1	0	genome.wustl.edu	37	12	50399110	50399110	+	Silent	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	12	50399110	50399110	G	A	SNP	RACGAP1	ENST00000312377	human	ensembl	74_37	-1	known	silent	c.354	p.S118	0.021	NULL	pfam_RhoGAP_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Rho_GTPase_activation_prot,superfamily_Regulat_G_prot_signal_superfam,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom	-	no_errors	RACGAP1	HGNC	ENSG00000161800				102	0	0	67	38	36.1905
ACVR1B	0	genome.wustl.edu	37	12	52374774	52374774	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	12	52374774	52374774	G	A	SNP	ACVR1B	ENST00000257963	human	ensembl	74_37	+1	known	missense	c.602	p.R201H	1.000	pfam_TGF_beta_rcpt_GS,superfamily_Kinase-like_dom,smart_TGF_beta_rcpt_GS	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_TGF_beta_rcpt_GS,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_TGF_beta_rcpt_GS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	ACVR1B	HGNC	ENSG00000135503				69	0	0	56	7	11.1111
KRT75	0	genome.wustl.edu	37	12	52826980	52826980	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	12	52826980	52826980	C	T	SNP	KRT75	ENST00000252245	human	ensembl	74_37	-1	known	silent	c.555	p.Q185	1.000	pfam_IF,prints_Keratin_II	pfam_IF,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT75	HGNC	ENSG00000170454				119	0	0	110	11	9.09091
NCKAP1L	0	genome.wustl.edu	37	12	54936413	54936413	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	12	54936413	54936413	T	C	SNP	NCKAP1L	ENST00000293373	human	ensembl	74_37	+1	known	missense	c.3328	p.Y1110H	1.000	pfam_Nck-associated_protein-1	pfam_Nck-associated_protein-1,superfamily_Nucl_hormone_rcpt_ligand-bd	-	no_errors	NCKAP1L	HGNC	ENSG00000123338				183	0	0	109	33	23.2394
OR6C76	0	genome.wustl.edu	37	12	55820443	55820443	+	Silent	SNP	A	A	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	12	55820443	55820443	A	C	SNP	OR6C76	ENST00000328314	human	ensembl	74_37	+1	known	silent	c.406	p.R136	0.001	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6C76	HGNC	ENSG00000185821				158	0	0	129	9	6.52174
COQ10A	0	genome.wustl.edu	37	12	56662937	56662937	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	12	56662937	56662937	C	T	SNP	COQ10A	ENST00000308197	human	ensembl	74_37	+1	known	missense	c.376	p.R126C	1.000	pfam_Polyket_cyc	pfam_Polyket_cyc	-	no_errors	COQ10A	HGNC	ENSG00000135469				143	0	0	101	48	32.2148
AVIL	0	genome.wustl.edu	37	12	58204205	58204205	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	12	58204205	58204205	G	A	SNP	AVIL	ENST00000257861	human	ensembl	74_37	-1	known	missense	c.688	p.R230C	0.008	NULL	pfam_Gelsolin_dom,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Villin/Gelsolin,smart_Villin_headpiece,pfscan_Villin_headpiece,prints_Villin/Gelsolin	-	no_errors	AVIL	HGNC	ENSG00000135407				95	0	0	93	8	7.92079
SRGAP1	0	genome.wustl.edu	37	12	64488720	64488720	+	Silent	SNP	A	A	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	12	64488720	64488720	A	T	SNP	SRGAP1	ENST00000355086	human	ensembl	74_37	+1	known	silent	c.1548	p.G516	0.959	superfamily_Rho_GTPase_activation_prot,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_FCH_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Fuc/Ara_isomerase_C,smart_FCH_dom,smart_RhoGAP_dom,smart_SH3_domain,pfscan_FCH_dom,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	SRGAP1	HGNC	ENSG00000196935				184	0	0	129	11	7.85714
XPOT	0	genome.wustl.edu	37	12	64812808	64812808	+	Silent	SNP	C	C	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	12	64812808	64812808	C	G	SNP	XPOT	ENST00000332707	human	ensembl	74_37	+1	known	silent	c.423	p.L141	0.776	pfam_Exportin-1/Importin-b-like,superfamily_ARM-type_fold	pfam_Exportin-1/Importin-b-like,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N	-	no_errors	XPOT	HGNC	ENSG00000184575				216	0	0	137	8	5.51724
LAG3	0	genome.wustl.edu	37	12	6882045	6882045	+	Silent	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	12	6882045	6882045	G	A	SNP	LAG3	ENST00000203629	human	ensembl	74_37	+1	known	silent	c.27	p.L9	0.102	NULL	smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	LAG3	HGNC	ENSG00000089692				38	0	0	28	6	17.6471
GLIPR1L2	0	genome.wustl.edu	37	12	75784952	75784952	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	12	75784952	75784952	C	A	SNP	GLIPR1L2	ENST00000550916	human	ensembl	74_37	+1	known	missense	c.56	p.A19E	0.000	NULL	pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1,prints_Allrgn_V5/Tpx1	-	no_errors	GLIPR1L2	HGNC	ENSG00000180481				57	0	0	45	16	26.2295
LIN7A	0	genome.wustl.edu	37	12	81331469	81331469	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	12	81331469	81331469	C	T	SNP	LIN7A	ENST00000552864	human	ensembl	74_37	-1	known	silent	c.33	p.T11	0.998	NULL	pfam_PDZ,pfam_L27_C,superfamily_PDZ,smart_L27,smart_PDZ,pirsf_Lin-7_homologue,pfscan_L27,pfscan_PDZ	-	no_errors	LIN7A	HGNC	ENSG00000111052				16	0	0	20	4	16.6667
LRRIQ1	0	genome.wustl.edu	37	12	85626524	85626524	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	12	85626524	85626524	T	C	SNP	LRRIQ1	ENST00000393217	human	ensembl	74_37	+1	known	missense	c.5006	p.V1669A	1.000	NULL	pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_IQ_motif_EF-hand-BS,smart_Leu-rich_rpt_typical-subtyp,pfscan_IQ_motif_EF-hand-BS	-	no_errors	LRRIQ1	HGNC	ENSG00000133640				86	0	0	36	12	25
ATP2B1	0	genome.wustl.edu	37	12	90010761	90010761	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	12	90010761	90010761	G	A	SNP	ATP2B1	ENST00000261173	human	ensembl	74_37	-1	known	missense	c.1885	p.R629C	1.000	pfam_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Ca-transp_plasma	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_plasma,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP2B1	HGNC	ENSG00000070961				147	0	0	99	8	7.47664
VEZT	0	genome.wustl.edu	37	12	95656840	95656840	+	Silent	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	12	95656840	95656840	G	A	SNP	VEZT	ENST00000436874	human	ensembl	74_37	+1	known	silent	c.417	p.L139	1.000	NULL	NULL	-	no_errors	VEZT	HGNC	ENSG00000028203				316	0	0	254	73	22.3242
ZMYM5	0	genome.wustl.edu	37	13	20411699	20411699	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	13	20411699	20411699	C	T	SNP	ZMYM5	ENST00000382905	human	ensembl	74_37	-1	known	missense	c.1135	p.V379I	0.000	NULL	pfam_Znf_MYM,smart_TRASH_dom	-	no_errors	ZMYM5	HGNC	ENSG00000132950				132	1	0.75188	114	14	10.9375
C1QTNF9B	0	genome.wustl.edu	37	13	24465970	24465970	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	13	24465970	24465970	T	C	SNP	C1QTNF9B	ENST00000382137	human	ensembl	74_37	-1	known	missense	c.460	p.M154V	0.000	pfam_Collagen	pfam_C1q,pfam_Collagen,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	C1QTNF9B	HGNC	ENSG00000205863				45	0	0	53	13	19.697
MTMR6	0	genome.wustl.edu	37	13	25825905	25825905	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	13	25825905	25825905	C	A	SNP	MTMR6	ENST00000381801	human	ensembl	74_37	-1	known	missense	c.1487	p.R496M	1.000	NULL	pfam_Myotubularin-like_Pase_dom,smart_Tyr_Pase_cat	-	no_errors	MTMR6	HGNC	ENSG00000139505				84	0	0	62	14	18.4211
ATP8A2	0	genome.wustl.edu	37	13	26043196	26043196	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	13	26043196	26043196	C	T	SNP	ATP8A2	ENST00000381655	human	ensembl	74_37	+1	known	missense	c.158	p.A53V	0.998	NULL	pfam_ATPase_P-typ_transduc_dom_A,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP8A2	HGNC	ENSG00000132932				46	0	0	57	9	13.6364
FRY	0	genome.wustl.edu	37	13	32761728	32761728	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	13	32761728	32761728	G	T	SNP	FRY	ENST00000380250	human	ensembl	74_37	+1	known	missense	c.3526	p.G1176C	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	FRY	HGNC	ENSG00000073910				116	0	0	71	48	40.3361
VWA8	0	genome.wustl.edu	37	13	42179380	42179380	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	13	42179380	42179380	G	A	SNP	VWA8	ENST00000379310	human	ensembl	74_37	-1	known	missense	c.4910	p.A1637V	1.000	NULL	pfam_ATPase_dyneun-rel_AAA,pfam_VWF_A,superfamily_P-loop_NTPase,smart_AAA+_ATPase,smart_VWF_A,pfscan_VWF_A	-	no_errors	VWA8	HGNC	ENSG00000102763				122	0	0	117	23	16.4286
TSC22D1	0	genome.wustl.edu	37	13	45147869	45147869	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	13	45147869	45147869	G	T	SNP	TSC22D1	ENST00000458659	human	ensembl	74_37	-1	known	missense	c.2342	p.A781D	0.989	NULL	pfam_TSC-22_Dip_Bun	-	no_errors	TSC22D1	HGNC	ENSG00000102804				150	0	0	156	12	7.14286
CDADC1	0	genome.wustl.edu	37	13	49865876	49865876	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	13	49865876	49865876	C	T	SNP	CDADC1	ENST00000251108	human	ensembl	74_37	+1	known	missense	c.1528	p.R510C	0.968	NULL	pfam_CMP_dCMP_Zn-bd,superfamily_Cytidine_deaminase-like	-	no_errors	CDADC1	HGNC	ENSG00000102543				106	0	0	123	25	16.8919
TBC1D4	0	genome.wustl.edu	37	13	75898529	75898529	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	13	75898529	75898529	G	A	SNP	TBC1D4	ENST00000377636	human	ensembl	74_37	-1	known	missense	c.2042	p.S681L	0.019	NULL	pfam_Rab-GTPase-TBC_dom,pfam_DUF3350,pfam_PTB/PI_dom,superfamily_Rab-GTPase-TBC_dom,smart_PTB/PI_dom,smart_Rab-GTPase-TBC_dom,pfscan_PTB/PI_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D4	HGNC	ENSG00000136111				41	0	0	32	12	27.2727
MYCBP2	0	genome.wustl.edu	37	13	77732134	77732134	+	Silent	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	13	77732134	77732134	T	C	SNP	MYCBP2	ENST00000407578	human	ensembl	74_37	-1	known	silent	c.6708	p.E2236	0.995	superfamily_ARM-type_fold	pfam_PHR,pfam_Reg_chr_condens,pfam_Filamin/ABP280_repeat-like,superfamily_RCC1/BLIP-II,superfamily_Galactose-bd-like,superfamily_Ig_E-set,superfamily_ARM-type_fold,smart_Znf_RING,pfscan_Filamin/ABP280_repeat-like,pfscan_Znf_RING,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	MYCBP2	HGNC	ENSG00000005810				104	1	0.952381	67	12	15.1899
EDNRB	0	genome.wustl.edu	37	13	78492668	78492668	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	13	78492668	78492668	G	A	SNP	EDNRB	ENST00000334286	human	ensembl	74_37	-1	known	missense	c.41	p.A14V	0.993	prints_ETB_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_ETB_rcpt,prints_Endthln_rcpt,prints_GPCR_Rhodpsn,prints_Bombsn_rcpt	-	no_errors	EDNRB	HGNC	ENSG00000136160				40	0	0	50	19	27.5362
SLITRK5	0	genome.wustl.edu	37	13	88329399	88329399	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	13	88329399	88329399	C	A	SNP	SLITRK5	ENST00000325089	human	ensembl	74_37	+1	known	missense	c.1756	p.L586I	0.988	smart_Cys-rich_flank_reg_C	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK5	HGNC	ENSG00000165300				209	1	0.47619	195	49	20.082
STK24	0	genome.wustl.edu	37	13	99118674	99118674	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	13	99118674	99118674	G	T	SNP	STK24	ENST00000376547	human	ensembl	74_37	-1	known	missense	c.775	p.L259I	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	STK24	HGNC	ENSG00000102572				98	0	0	65	10	13.3333
WDR25	0	genome.wustl.edu	37	14	100934422	100934422	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	14	100934422	100934422	G	T	SNP	WDR25	ENST00000335290	human	ensembl	74_37	+1	known	missense	c.887	p.R296L	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR25	HGNC	ENSG00000176473				160	0	0	145	48	24.8705
SNORD114-1	0	genome.wustl.edu	37	14	101416228	101416228	+	RNA	SNP	A	A	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	14	101416228	101416228	A	T	SNP	SNORD114-1	ENST00000362705	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.513	-	-	-	no_errors	SNORD114-1	HGNC	ENSG00000199575				53	0	0	27	3	10
RCOR1	0	genome.wustl.edu	37	14	103174857	103174857	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	14	103174857	103174857	C	T	SNP	RCOR1	ENST00000262241	human	ensembl	74_37	+1	known	missense	c.716	p.T239M	0.994	superfamily_Homeodomain-like,smart_SANT/Myb	pfam_SANT/Myb,pfam_ELM2_dom,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_ELM2_dom,prints_Antifreeze_1	-	no_errors	RCOR1	HGNC	ENSG00000089902				322	1	0.309598	234	30	11.3636
GPR132	0	genome.wustl.edu	37	14	105517586	105517586	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	14	105517586	105517586	C	T	SNP	GPR132	ENST00000329797	human	ensembl	74_37	-1	known	silent	c.888	p.L296	0.323	pfam_GPCR_Rhodpsn,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,prints_G2A_lysphc_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	GPR132	HGNC	ENSG00000183484				37	0	0	57	5	8.06452
PACS2	0	genome.wustl.edu	37	14	105849215	105849215	+	Silent	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	14	105849215	105849215	G	A	SNP	PACS2	ENST00000458164	human	ensembl	74_37	+1	known	silent	c.1590	p.A530	0.014	pfam_Phosphofurin_acidic_CS-1	pfam_Phosphofurin_acidic_CS-1	-	no_errors	PACS2	HGNC	ENSG00000179364				31	0	0	23	6	20.6897
OR11H4	0	genome.wustl.edu	37	14	20711372	20711372	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	14	20711372	20711372	A	G	SNP	OR11H4	ENST00000315409	human	ensembl	74_37	+1	known	missense	c.422	p.Q141R	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR11H4	HGNC	ENSG00000176198				145	0	0	124	24	16.2162
METTL17	0	genome.wustl.edu	37	14	21460309	21460309	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	14	21460309	21460309	C	T	SNP	METTL17	ENST00000382985	human	ensembl	74_37	+1	known	missense	c.391	p.R131C	0.207	NULL	pfam_Ribosomal_Rsm22_bac-type,pfam_Methyltransf_11	-	no_errors	METTL17	HGNC	ENSG00000165792				205	0	0	156	46	22.7723
TM9SF1	0	genome.wustl.edu	37	14	24663934	24663934	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	14	24663934	24663934	G	A	SNP	TM9SF1	ENST00000556387	human	ensembl	74_37	-1	known	missense	c.919	p.R307W	1.000	pfam_EMP70	pfam_EMP70,pfam_Snf7	-	no_errors	TM9SF1	HGNC	ENSG00000100926				361	0	0	391	26	6.23501
GZMH	0	genome.wustl.edu	37	14	25078817	25078817	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	14	25078817	25078817	C	A	SNP	GZMH	ENST00000216338	human	ensembl	74_37	-1	known	missense	c.3	p.M1I	0.966	NULL	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	GZMH	HGNC	ENSG00000100450				110	0	0	85	28	24.7788
NPAS3	0	genome.wustl.edu	37	14	34029327	34029327	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	14	34029327	34029327	T	C	SNP	NPAS3	ENST00000356141	human	ensembl	74_37	+1	known	missense	c.469	p.S157P	1.000	pfam_PAS_fold,smart_PAS,pfscan_PAS	pfam_PAS_fold_3,pfam_PAS_fold,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,pfscan_PAS,pfscan_bHLH_dom	-	no_errors	NPAS3	HGNC	ENSG00000151322				53	0	0	31	6	16.2162
PSMC6	0	genome.wustl.edu	37	14	53194224	53194224	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	14	53194224	53194224	C	T	SNP	PSMC6	ENST00000445930	human	ensembl	74_37	+1	known	silent	c.1101	p.F367	1.000	superfamily_P-loop_NTPase,tigrfam_26S_Psome_P45	pfam_ATPase_AAA_core,pfam_ATPase_AAA-2,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_P-loop_NTPase,smart_AAA+_ATPase,tigrfam_26S_Psome_P45	-	no_errors	PSMC6	HGNC	ENSG00000100519				52	0	0	28	8	22.2222
WDHD1	0	genome.wustl.edu	37	14	55477052	55477052	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	14	55477052	55477052	C	T	SNP	WDHD1	ENST00000360586	human	ensembl	74_37	-1	known	missense	c.316	p.G106S	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_DUF3639,pfam_TIF_beta_prop-like,superfamily_WD40_repeat_dom,superfamily_HMG_box_dom,smart_WD40_repeat,smart_HMG_box_dom,pfscan_HMG_box_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDHD1	HGNC	ENSG00000198554				163	0	0	87	35	28.6885
C14orf37	0	genome.wustl.edu	37	14	58605156	58605156	+	Silent	SNP	G	G	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	14	58605156	58605156	G	T	SNP	C14orf37	ENST00000267485	human	ensembl	74_37	-1	known	silent	c.921	p.A307	0.003	NULL	NULL	-	no_errors	C14orf37	HGNC	ENSG00000139971				176	0	0	142	41	22.4044
ARG2	0	genome.wustl.edu	37	14	68086712	68086712	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	14	68086712	68086712	C	T	SNP	ARG2	ENST00000261783	human	ensembl	74_37	+1	known	silent	c.18	p.S6	0.007	NULL	pfam_Ureohydrolase,prints_Ureohydrolase,tigrfam_Arginase	-	no_errors	ARG2	HGNC	ENSG00000081181				18	0	0	18	4	18.1818
RDH11	0	genome.wustl.edu	37	14	68159192	68159192	+	Silent	SNP	A	A	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	14	68159192	68159192	A	G	SNP	RDH11	ENST00000381346	human	ensembl	74_37	-1	known	silent	c.312	p.T104	0.990	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,pfam_Epimerase_deHydtase	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,pfam_Epimerase_deHydtase,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	RDH11	HGNC	ENSG00000072042				205	0	0	181	32	15.0235
ADAM20	0	genome.wustl.edu	37	14	70990275	70990275	+	Silent	SNP	A	A	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	14	70990275	70990275	A	G	SNP	ADAM20	ENST00000256389	human	ensembl	74_37	-1	known	silent	c.1350	p.Y450	0.000	NULL	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM20	HGNC	ENSG00000134007				169	0	0	108	36	25
SIPA1L1	0	genome.wustl.edu	37	14	72171482	72171482	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	14	72171482	72171482	G	A	SNP	SIPA1L1	ENST00000555818	human	ensembl	74_37	+1	known	missense	c.3691	p.E1231K	1.000	NULL	pfam_DUF3401,pfam_Rap_GAP_dom,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP_dom	-	no_errors	SIPA1L1	HGNC	ENSG00000197555				56	0	0	21	7	25
NRXN3	0	genome.wustl.edu	37	14	79746738	79746738	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	14	79746738	79746738	G	A	SNP	NRXN3	ENST00000428277	human	ensembl	74_37	+1	known	missense	c.104	p.S35N	1.000	NULL	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_Neurexin-like,pfscan_Laminin_G	-	no_errors	NRXN3	HGNC	ENSG00000021645				187	0	0	165	32	16.2437
FOXN3	0	genome.wustl.edu	37	14	89747303	89747303	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	14	89747303	89747303	G	T	SNP	FOXN3	ENST00000261302	human	ensembl	74_37	-1	known	missense	c.736	p.L246I	1.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXN3	HGNC	ENSG00000053254				40	0	0	24	9	27.2727
NRDE2	0	genome.wustl.edu	37	14	90755357	90755357	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	14	90755357	90755357	G	A	SNP	NRDE2	ENST00000354366	human	ensembl	74_37	-1	known	missense	c.2362	p.H788Y	0.994	NULL	pfam_NRDE-2	-	no_errors	NRDE2	HGNC	ENSG00000119720				319	0	0	239	76	24.127
NRDE2	0	genome.wustl.edu	37	14	90767681	90767681	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	14	90767681	90767681	C	T	SNP	NRDE2	ENST00000354366	human	ensembl	74_37	-1	known	missense	c.1447	p.A483T	1.000	pfam_NRDE-2	pfam_NRDE-2	-	no_errors	NRDE2	HGNC	ENSG00000119720				52	0	0	51	4	7.27273
CLMN	0	genome.wustl.edu	37	14	95786119	95786119	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	14	95786119	95786119	T	C	SNP	CLMN	ENST00000298912	human	ensembl	74_37	-1	known	missense	c.11	p.H4R	1.000	NULL	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	CLMN	HGNC	ENSG00000165959				32	0	0	42	7	14.2857
ATG2B	0	genome.wustl.edu	37	14	96800759	96800759	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	14	96800759	96800759	G	A	SNP	ATG2B	ENST00000359933	human	ensembl	74_37	-1	known	missense	c.1004	p.A335V	1.000	NULL	pfam_Autophagy-rel_C	-	no_errors	ATG2B	HGNC	ENSG00000066739				92	0	0	49	4	7.54717
TM2D3	0	genome.wustl.edu	37	15	102182698	102182698	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	15	102182698	102182698	C	A	SNP	TM2D3	ENST00000333202	human	ensembl	74_37	-1	known	missense	c.728	p.G243V	1.000	NULL	pfam_TM2	-	no_errors	TM2D3	HGNC	ENSG00000184277				148	0	0	110	33	23.0769
HERC2P3	0	genome.wustl.edu	37	15	20649514	20649514	+	RNA	SNP	G	G	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	15	20649514	20649514	G	T	SNP	HERC2P3	ENST00000426501	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.545	-	-	-	no_errors	HERC2P3	HGNC	ENSG00000180229				169	0	0	207	23	10
MKRN3	0	genome.wustl.edu	37	15	23811706	23811706	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	15	23811706	23811706	G	A	SNP	MKRN3	ENST00000314520	human	ensembl	74_37	+1	known	missense	c.777	p.M259I	0.001	smart_Znf_CCCH	pfam_Znf_C3HC4_RING-type,smart_Znf_CCCH,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	MKRN3	HGNC	ENSG00000179455				73	0	0	70	18	20.4545
MKRN3	0	genome.wustl.edu	37	15	23812005	23812005	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	15	23812005	23812005	A	C	SNP	MKRN3	ENST00000314520	human	ensembl	74_37	+1	known	missense	c.1076	p.K359T	1.000	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	pfam_Znf_C3HC4_RING-type,smart_Znf_CCCH,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	MKRN3	HGNC	ENSG00000179455				128	1	0.775194	94	13	12.1495
NPAP1	0	genome.wustl.edu	37	15	24921372	24921372	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	15	24921372	24921372	A	G	SNP	NPAP1	ENST00000329468	human	ensembl	74_37	+1	known	missense	c.358	p.S120G	0.000	NULL	NULL	-	no_errors	NPAP1	HGNC	ENSG00000185823				63	0	0	80	6	6.97674
NPAP1	0	genome.wustl.edu	37	15	24922571	24922571	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	15	24922571	24922571	G	C	SNP	NPAP1	ENST00000329468	human	ensembl	74_37	+1	known	missense	c.1557	p.M519I	0.028	NULL	NULL	-	no_errors	NPAP1	HGNC	ENSG00000185823				253	0	0	238	36	13.1387
NPAP1	0	genome.wustl.edu	37	15	24922914	24922914	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	15	24922914	24922914	A	T	SNP	NPAP1	ENST00000329468	human	ensembl	74_37	+1	known	missense	c.1900	p.S634C	0.001	NULL	NULL	-	no_errors	NPAP1	HGNC	ENSG00000185823				139	0	0	118	29	19.7279
TJP1	0	genome.wustl.edu	37	15	30010323	30010323	+	Splice_Site	SNP	C	C	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	15	30010323	30010323	C	A	SNP	TJP1	ENST00000346128	human	ensembl	74_37	-1	known	splice_site	c.3877-1	e22-1	1.000	-	-	-	no_errors	TJP1	HGNC	ENSG00000104067				170	0	0	131	35	21.0843
CHRNA7	0	genome.wustl.edu	37	15	32460281	32460281	+	Silent	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	15	32460281	32460281	G	A	SNP	CHRNA7	ENST00000454250	human	ensembl	74_37	+1	known	silent	c.1218	p.P406	0.927	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNA7	HGNC	ENSG00000175344				69	0	0	92	17	15.5963
IVD	0	genome.wustl.edu	37	15	40707611	40707611	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	15	40707611	40707611	C	T	SNP	IVD	ENST00000487418	human	ensembl	74_37	+1	known	missense	c.899	p.A300V	1.000	pfam_AcylCo_DH/oxidase_C,pfam_Acyl-CoA_DH_2_C,superfamily_AcylCo_DH/oxidase_C	pfam_AcylCo_DH/oxidase_C,pfam_AcylCoA_DH/ox_N,pfam_Acyl-CoA_Oxase/DH_cen-dom,pfam_Acyl-CoA_DH_2_C,superfamily_AcylCoA_DH/oxidase_NM_dom,superfamily_AcylCo_DH/oxidase_C	-	no_errors	IVD	HGNC	ENSG00000128928				39	0	0	39	4	9.30233
VPS18	0	genome.wustl.edu	37	15	41192156	41192156	+	Silent	SNP	C	C	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	15	41192156	41192156	C	A	SNP	VPS18	ENST00000220509	human	ensembl	74_37	+1	known	silent	c.1140	p.A380	1.000	pfam_Pep3_Vps18	pfam_Pep3_Vps18,pfam_Clathrin_H-chain/VPS_repeat,superfamily_ARM-type_fold	-	no_errors	VPS18	HGNC	ENSG00000104142				77	0	0	95	18	15.9292
DLL4	0	genome.wustl.edu	37	15	41228487	41228487	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	15	41228487	41228487	C	T	SNP	DLL4	ENST00000249749	human	ensembl	74_37	+1	known	silent	c.1302	p.G434	0.618	pfam_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_EG-like_dom,pfam_Notch_ligand_N,pfam_DSL,pfam_EGF_extracell,superfamily_Growth_fac_rcpt_N_dom,smart_DSL,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_DSL,pfscan_EG-like_dom	-	no_errors	DLL4	HGNC	ENSG00000128917				14	0	0	16	6	27.2727
RPAP1	0	genome.wustl.edu	37	15	41819655	41819655	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	15	41819655	41819655	G	A	SNP	RPAP1	ENST00000304330	human	ensembl	74_37	-1	known	missense	c.1577	p.P526L	1.000	NULL	pfam_RNA_pol_II_AP1_C,pfam_RNA_pol_II_AP1_N,superfamily_ARM-type_fold	-	no_errors	RPAP1	HGNC	ENSG00000103932				111	0	0	86	23	21.1009
RPAP1	0	genome.wustl.edu	37	15	41822163	41822163	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	15	41822163	41822163	C	T	SNP	RPAP1	ENST00000304330	human	ensembl	74_37	-1	known	missense	c.958	p.V320M	0.000	NULL	pfam_RNA_pol_II_AP1_C,pfam_RNA_pol_II_AP1_N,superfamily_ARM-type_fold	-	no_errors	RPAP1	HGNC	ENSG00000103932				31	0	0	33	4	10.8108
TGM5	0	genome.wustl.edu	37	15	43531359	43531359	+	Splice_Site	SNP	A	A	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	15	43531359	43531359	A	G	SNP	TGM5	ENST00000220420	human	ensembl	74_37	-1	known	splice_site	c.1105+2	e8+2	1.000	-	-	-	no_errors	TGM5	HGNC	ENSG00000104055				65	0	0	73	19	20.6522
B2M	0	genome.wustl.edu	37	15	45003747	45003747	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	15	45003747	45003747	G	A	SNP	B2M	ENST00000544417	human	ensembl	74_37	+1	known	missense	c.3	p.M1I	0.701	NULL	pfam_Ig_C1-set,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	B2M	HGNC	ENSG00000166710				63	0	0	69	14	16.8675
SEMA6D	0	genome.wustl.edu	37	15	48063126	48063126	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	15	48063126	48063126	A	G	SNP	SEMA6D	ENST00000316364	human	ensembl	74_37	+1	known	missense	c.2366	p.K789R	1.000	NULL	pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,pfscan_Semap_dom	-	no_errors	SEMA6D	HGNC	ENSG00000137872				83	0	0	62	27	30.3371
FBN1	0	genome.wustl.edu	37	15	48780642	48780642	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	15	48780642	48780642	C	T	SNP	FBN1	ENST00000316623	human	ensembl	74_37	-1	known	missense	c.3131	p.C1044Y	1.000	pfam_EGF-like_Ca-bd_dom,superfamily_TB_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pirsf_FBN,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pirsf_FBN,pfscan_EG-like_dom	-	no_errors	FBN1	HGNC	ENSG00000166147				135	1	0.735294	101	29	22.3077
USP50	0	genome.wustl.edu	37	15	50836866	50836866	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	15	50836866	50836866	T	C	SNP	USP50	ENST00000532404	human	ensembl	74_37	-1	known	missense	c.166	p.N56D	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP50	HGNC	ENSG00000170236				36	0	0	42	3	6.66667
NEDD4	0	genome.wustl.edu	37	15	56144622	56144622	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	15	56144622	56144622	C	A	SNP	NEDD4	ENST00000508342	human	ensembl	74_37	-1	known	missense	c.2403	p.Q801H	1.000	superfamily_WW_dom	pfam_HECT,pfam_WW_dom,superfamily_HECT,superfamily_WW_dom,superfamily_C2_dom,smart_WW_dom,smart_HECT,pfscan_HECT,pfscan_WW_dom	-	no_errors	NEDD4	HGNC	ENSG00000069869				69	0	0	48	5	9.43396
POLR2M	0	genome.wustl.edu	37	15	58001264	58001264	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	15	58001264	58001264	T	C	SNP	POLR2M	ENST00000299638	human	ensembl	74_37	+1	known	missense	c.466	p.S156P	0.000	NULL	NULL	-	no_errors	POLR2M	HGNC	ENSG00000255529				40	0	0	39	8	17.0213
RNF111	0	genome.wustl.edu	37	15	59368267	59368267	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	15	59368267	59368267	A	G	SNP	RNF111	ENST00000434298	human	ensembl	74_37	+1	known	missense	c.1801	p.I601V	0.959	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF111	HGNC	ENSG00000157450				111	0	0	121	23	15.9722
DAPK2	0	genome.wustl.edu	37	15	64222642	64222642	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	15	64222642	64222642	A	G	SNP	DAPK2	ENST00000261891	human	ensembl	74_37	-1	known	missense	c.596	p.V199A	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_RIO-like_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	DAPK2	HGNC	ENSG00000035664				90	0	0	56	14	20
MAP2K1	0	genome.wustl.edu	37	15	66737006	66737006	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	15	66737006	66737006	C	A	SNP	MAP2K1	ENST00000307102	human	ensembl	74_37	+1	known	missense	c.529	p.L177M	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MAP2K1	HGNC	ENSG00000169032				135	0	0	100	11	9.90991
IQCH	0	genome.wustl.edu	37	15	67664873	67664873	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	15	67664873	67664873	G	A	SNP	IQCH	ENST00000335894	human	ensembl	74_37	+1	known	missense	c.1178	p.R393H	0.019	superfamily_P-loop_NTPase,pfscan_IQ_motif_EF-hand-BS	superfamily_P-loop_NTPase,pfscan_IQ_motif_EF-hand-BS	-	no_errors	IQCH	HGNC	ENSG00000103599				204	0	0	137	32	18.9349
PKM	0	genome.wustl.edu	37	15	72499193	72499193	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	15	72499193	72499193	C	T	SNP	PKM	ENST00000319622	human	ensembl	74_37	-1	known	missense	c.1016	p.R339H	1.000	pfam_Pyrv_Knase_brl,superfamily_Pyrv/PenolPyrv_Kinase-like_dom,prints_Pyr_Knase,tigrfam_Pyr_Knase	pfam_Pyrv_Knase_brl,pfam_Pyrv_Knase_C,superfamily_Pyrv/PenolPyrv_Kinase-like_dom,superfamily_Pyrv_Knase_C,superfamily_Pyrv_Knase-like_insert_dom,prints_Pyr_Knase,tigrfam_Pyr_Knase	-	no_errors	PKM	HGNC	ENSG00000067225				37	0	0	36	10	21.7391
UBL7	0	genome.wustl.edu	37	15	74741564	74741564	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	15	74741564	74741564	G	A	SNP	UBL7	ENST00000361351	human	ensembl	74_37	-1	known	missense	c.845	p.P282L	0.998	NULL	pfam_Ubiquitin_dom,pfam_UBA/Ts_N,superfamily_UBA-like,smart_Ubiquitin_dom,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Ubiquitin_supergroup	-	no_errors	UBL7	HGNC	ENSG00000138629				68	0	0	62	13	17.3333
LMAN1L	0	genome.wustl.edu	37	15	75108840	75108840	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	15	75108840	75108840	G	A	SNP	LMAN1L	ENST00000309664	human	ensembl	74_37	+1	known	missense	c.403	p.G135R	0.998	pfam_Lectin_leg,superfamily_ConA-like_lec_gl_sf	pfam_Lectin_leg,superfamily_ConA-like_lec_gl_sf	-	no_errors	LMAN1L	HGNC	ENSG00000140506				126	0	0	117	22	15.8273
CSPG4	0	genome.wustl.edu	37	15	75970141	75970141	+	Silent	SNP	G	G	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	15	75970141	75970141	G	T	SNP	CSPG4	ENST00000308508	human	ensembl	74_37	-1	known	silent	c.5037	p.S1679	0.957	NULL	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	-	no_errors	CSPG4	HGNC	ENSG00000173546				86	0	0	110	20	15.3846
CSPG4	0	genome.wustl.edu	37	15	75979870	75979870	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	15	75979870	75979870	C	T	SNP	CSPG4	ENST00000308508	human	ensembl	74_37	-1	known	missense	c.3536	p.R1179Q	1.000	NULL	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	-	no_errors	CSPG4	HGNC	ENSG00000173546				101	0	0	80	21	20.7921
MEX3B	0	genome.wustl.edu	37	15	82336148	82336148	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	15	82336148	82336148	C	T	SNP	MEX3B	ENST00000329713	human	ensembl	74_37	-1	known	missense	c.1063	p.G355S	0.973	NULL	pfam_KH_dom_type_1,smart_KH_dom,smart_Znf_RING,pfscan_Znf_RING,pfscan_KH_dom_type_1	-	no_errors	MEX3B	HGNC	ENSG00000183496				66	0	0	67	18	21.1765
ADAMTSL3	0	genome.wustl.edu	37	15	84582089	84582089	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	15	84582089	84582089	A	G	SNP	ADAMTSL3	ENST00000286744	human	ensembl	74_37	+1	known	missense	c.1946	p.E649G	1.000	superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTSL3	HGNC	ENSG00000156218				54	0	0	33	4	10.8108
POLG	0	genome.wustl.edu	37	15	89862219	89862219	+	Silent	SNP	G	G	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	15	89862219	89862219	G	C	SNP	POLG	ENST00000268124	human	ensembl	74_37	-1	known	silent	c.3216	p.T1072	1.000	pirsf_DNA-dir_DNA_pol_A_mt_sub,pfam_DNA-dir_DNA_pol_A_palm_dom,smart_DNA-dir_DNA_pol_A_palm_dom	pirsf_DNA-dir_DNA_pol_A_mt_sub,pfam_DNA-dir_DNA_pol_A_palm_dom,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_A_palm_dom,prints_DNA-dir_DNA_pol_A_mt	-	no_errors	POLG	HGNC	ENSG00000140521				85	0	0	90	7	7.21649
CLEC16A	0	genome.wustl.edu	37	16	11154827	11154827	+	Silent	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	16	11154827	11154827	G	A	SNP	CLEC16A	ENST00000409790	human	ensembl	74_37	+1	known	silent	c.2064	p.L688	1.000	NULL	pfam_Uncharacterised_FPL	-	no_errors	CLEC16A	HGNC	ENSG00000038532				228	1	0.436681	234	15	6.0241
SSTR5	0	genome.wustl.edu	37	16	1129861	1129861	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	16	1129861	1129861	C	T	SNP	SSTR5	ENST00000293897	human	ensembl	74_37	+1	known	silent	c.993	p.D331	0.710	prints_Somatstn_rcpt_5	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Somatstn_rcpt_5,prints_Somatstn_rcpt,prints_Opioid_rcpt,prints_NPY_rcpt	-	no_errors	SSTR5	HGNC	ENSG00000162009				35	0	0	45	7	13.4615
SNX29	0	genome.wustl.edu	37	16	12142456	12142456	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	16	12142456	12142456	G	A	SNP	SNX29	ENST00000566228	human	ensembl	74_37	+1	putative	missense	c.727	p.V243M	0.460	NULL	pfam_Run,pfam_Phox,superfamily_Phox,smart_Run,smart_Phox,pfscan_Phox,pfscan_Run	-	no_errors	SNX29	HGNC	ENSG00000048471				111	0	0	87	22	20.1835
TELO2	0	genome.wustl.edu	37	16	1551731	1551731	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	16	1551731	1551731	G	A	SNP	TELO2	ENST00000262319	human	ensembl	74_37	+1	known	missense	c.1429	p.V477I	0.008	NULL	pfam_Telomere_length_regulation_dom,superfamily_ARM-type_fold	-	no_errors	TELO2	HGNC	ENSG00000100726				75	0	0	59	12	16.9014
GDE1	0	genome.wustl.edu	37	16	19528399	19528399	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	16	19528399	19528399	C	T	SNP	GDE1	ENST00000353258	human	ensembl	74_37	-1	known	missense	c.374	p.R125Q	0.039	pfam_GlyceroP-diester-Pdiesterase,superfamily_PLC-like_Pdiesterase_TIM-brl	pfam_GlyceroP-diester-Pdiesterase,superfamily_PLC-like_Pdiesterase_TIM-brl	-	no_errors	GDE1	HGNC	ENSG00000006007				101	0	0	71	13	15.4762
ZP2	0	genome.wustl.edu	37	16	21221474	21221474	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	16	21221474	21221474	A	G	SNP	ZP2	ENST00000219593	human	ensembl	74_37	-1	known	missense	c.191	p.F64S	0.021	NULL	pfam_ZP_dom,smart_ZP_dom,pfscan_ZP_dom,prints_ZP_dom	-	no_errors	ZP2	HGNC	ENSG00000103310				105	0	0	67	9	11.8421
PKD1	0	genome.wustl.edu	37	16	2164521	2164521	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	16	2164521	2164521	G	A	SNP	PKD1	ENST00000262304	human	ensembl	74_37	-1	known	missense	c.2503	p.R835C	0.599	tigrfam_Polycystin_cat	pfam_PKD_dom,pfam_PKD1_2_channel,pfam_PKD/REJ-like,pfam_PLAT/LH2_dom,pfam_C-type_lectin,pfam_WSC_carb-bd,pfam_GPS_dom,superfamily_C-type_lectin_fold,superfamily_Lipase_LipOase,superfamily_PKD_dom,superfamily_Fe_hydrogenase,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_WSC_carb-bd_subgr,smart_PKD/Chitinase_dom,smart_C-type_lectin,smart_GPS_dom,smart_PLAT/LH2_dom,prints_PKD_1,pfscan_GPS_dom,pfscan_C-type_lectin,pfscan_PKD_dom,pfscan_PLAT/LH2_dom,pfscan_REJ-like,pfscan_WSC_carb-bd,tigrfam_Polycystin_cat	-	no_errors	PKD1	HGNC	ENSG00000008710				26	0	0	21	6	22.2222
E4F1	0	genome.wustl.edu	37	16	2284966	2284966	+	Silent	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	16	2284966	2284966	G	A	SNP	E4F1	ENST00000301727	human	ensembl	74_37	+1	known	silent	c.1899	p.S633	0.012	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	E4F1	HGNC	ENSG00000167967				9	0	0	15	4	21.0526
USP31	0	genome.wustl.edu	37	16	23080493	23080493	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	16	23080493	23080493	G	A	SNP	USP31	ENST00000219689	human	ensembl	74_37	-1	known	missense	c.2933	p.P978L	0.064	NULL	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP31	HGNC	ENSG00000103404				123	0	0	101	20	16.5289
COG7	0	genome.wustl.edu	37	16	23415109	23415109	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	16	23415109	23415109	G	A	SNP	COG7	ENST00000307149	human	ensembl	74_37	-1	known	missense	c.1709	p.A570V	0.976	pfam_COG7	pfam_COG7	-	no_errors	COG7	HGNC	ENSG00000168434				62	0	0	59	12	16.9014
CACNG3	0	genome.wustl.edu	37	16	24372735	24372735	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	16	24372735	24372735	C	T	SNP	CACNG3	ENST00000005284	human	ensembl	74_37	+1	known	missense	c.499	p.R167C	0.996	pfam_PMP22/EMP/MP20/Claudin	pfam_PMP22/EMP/MP20/Claudin,prints_VDCC_gsu	-	no_errors	CACNG3	HGNC	ENSG00000006116				202	0	0	165	36	17.9104
ABCA17P	0	genome.wustl.edu	37	16	2474693	2474693	+	RNA	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	16	2474693	2474693	C	T	SNP	ABCA17P	ENST00000469908	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	ABCA17P	HGNC	ENSG00000238098				18	0	0	20	5	20
KIAA0556	0	genome.wustl.edu	37	16	27765529	27765529	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	16	27765529	27765529	C	T	SNP	KIAA0556	ENST00000261588	human	ensembl	74_37	+1	known	silent	c.3588	p.V1196	0.000	NULL	superfamily_Thaumatin	-	no_errors	KIAA0556	HGNC	ENSG00000047578				71	0	0	85	16	15.8416
GSG1L	0	genome.wustl.edu	37	16	27802759	27802759	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	16	27802759	27802759	G	C	SNP	GSG1L	ENST00000447459	human	ensembl	74_37	-1	known	missense	c.928	p.P310A	1.000	NULL	pfam_GSG-1,pfam_PMP22/EMP/MP20/Claudin	-	no_errors	GSG1L	HGNC	ENSG00000169181				40	0	0	36	4	10
TUFM	0	genome.wustl.edu	37	16	28856346	28856346	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	16	28856346	28856346	C	T	SNP	TUFM	ENST00000313511	human	ensembl	74_37	-1	known	missense	c.445	p.G149S	1.000	pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,prints_EF_GTP-bd_dom,tigrfam_Transl_elong_EFTu/EF1A_bac/org	pfam_EF_GTP-bd_dom,pfam_Transl_elong_EFTu/EF1A_C,pfam_Transl_elong_EFTu/EF1A_2,superfamily_P-loop_NTPase,superfamily_Transl_elong_EF1A/Init_IF2_C,superfamily_Transl_B-barrel,prints_EF_GTP-bd_dom,tigrfam_Transl_elong_EFTu/EF1A_bac/org	-	no_errors	TUFM	HGNC	ENSG00000178952				77	0	0	57	24	29.6296
LAT	0	genome.wustl.edu	37	16	28997940	28997940	+	Silent	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	16	28997940	28997940	G	A	SNP	LAT	ENST00000360872	human	ensembl	74_37	+1	known	silent	c.390	p.P130	0.000	NULL	prints_Linker_for_activat_Tcells_prot	-	no_errors	LAT	HGNC	ENSG00000213658				47	0	0	59	7	10.6061
MVP	0	genome.wustl.edu	37	16	29853263	29853263	+	Silent	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	16	29853263	29853263	G	A	SNP	MVP	ENST00000357402	human	ensembl	74_37	+1	known	silent	c.1464	p.S488	0.001	NULL	pfam_Vault_N,pfam_MVP_shoulder	-	no_errors	MVP	HGNC	ENSG00000013364				44	0	0	44	12	21.4286
SEZ6L2	0	genome.wustl.edu	37	16	29891335	29891335	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	16	29891335	29891335	T	C	SNP	SEZ6L2	ENST00000308713	human	ensembl	74_37	-1	known	missense	c.1423	p.T475A	1.000	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,pfam_CUB_dom,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	SEZ6L2	HGNC	ENSG00000174938				87	0	0	75	5	6.25
SRCAP	0	genome.wustl.edu	37	16	30735442	30735442	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	16	30735442	30735442	C	T	SNP	SRCAP	ENST00000262518	human	ensembl	74_37	+1	known	missense	c.4697	p.A1566V	1.000	NULL	pfam_SNF2_N,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,smart_AT_hook_DNA-bd_motif,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_AT_hook-like	-	no_errors	SRCAP	HGNC	ENSG00000080603				84	0	0	66	26	28.2609
C16orf93	0	genome.wustl.edu	37	16	30768894	30768894	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	16	30768894	30768894	C	T	SNP	C16orf93	ENST00000543610	human	ensembl	74_37	-1	known	missense	c.899	p.R300Q	0.474	NULL	NULL	-	no_errors	C16orf93	HGNC	ENSG00000196118				130	0	0	130	31	19.2547
KAT8	0	genome.wustl.edu	37	16	31131792	31131792	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	16	31131792	31131792	G	A	SNP	KAT8	ENST00000448516	human	ensembl	74_37	+1	known	missense	c.419	p.R140H	1.000	superfamily_Chromodomain-like	pfam_MOZ_SAS,pfam_Tudor-knot,superfamily_Acyl_CoA_acyltransferase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow	-	no_errors	KAT8	HGNC	ENSG00000103510				36	0	0	35	12	25.5319
PRSS36	0	genome.wustl.edu	37	16	31152917	31152917	+	Silent	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	16	31152917	31152917	G	A	SNP	PRSS36	ENST00000268281	human	ensembl	74_37	-1	known	silent	c.1774	p.L592	0.925	pirsf_Pept_S1A_polyserase-2,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1	pirsf_Pept_S1A_polyserase-2,pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_Peptidase_S1	-	no_errors	PRSS36	HGNC	ENSG00000178226				60	0	0	73	25	25.5102
ITGAX	0	genome.wustl.edu	37	16	31383749	31383749	+	Silent	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	16	31383749	31383749	G	A	SNP	ITGAX	ENST00000268296	human	ensembl	74_37	+1	known	silent	c.2211	p.T737	0.680	pfam_Integrin_alpha-2,prints_Integrin_alpha	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGAX	HGNC	ENSG00000140678				75	0	0	75	29	27.8846
ITGAD	0	genome.wustl.edu	37	16	31426276	31426276	+	Silent	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	16	31426276	31426276	G	A	SNP	ITGAD	ENST00000389202	human	ensembl	74_37	+1	known	silent	c.2247	p.V749	0.890	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGAD	HGNC	ENSG00000156886				121	0	0	103	30	22.5564
ZNF213	0	genome.wustl.edu	37	16	3190766	3190766	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	16	3190766	3190766	C	T	SNP	ZNF213	ENST00000396878	human	ensembl	74_37	+1	known	silent	c.798	p.S266	0.000	pfscan_Krueppel-associated_box	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF213	HGNC	ENSG00000085644				86	0	0	56	22	28.2051
SLC6A10P	0	genome.wustl.edu	37	16	32890625	32890625	+	RNA	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	16	32890625	32890625	G	A	SNP	SLC6A10P	ENST00000330048	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SLC6A10P	HGNC	ENSG00000214617				43	0	0	39	6	13.3333
MEFV	0	genome.wustl.edu	37	16	3293871	3293871	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	16	3293871	3293871	T	C	SNP	MEFV	ENST00000219596	human	ensembl	74_37	-1	known	missense	c.1781	p.Q594R	0.816	superfamily_ConA-like_lec_gl_sf,pfscan_B30.2/SPRY	pfam_DAPIN,pfam_SPRY_rcpt,pfam_Znf_B-box,superfamily_ConA-like_lec_gl_sf,superfamily_DEATH-like_dom,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_DAPIN,pfscan_Znf_B-box,prints_Butyrophylin	-	no_errors	MEFV	HGNC	ENSG00000103313				48	0	0	54	8	12.9032
CREBBP	0	genome.wustl.edu	37	16	3808004	3808004	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	16	3808004	3808004	T	C	SNP	CREBBP	ENST00000262367	human	ensembl	74_37	-1	known	missense	c.3415	p.K1139E	1.000	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX_dom,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX_dom,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX_dom,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	CREBBP	HGNC	ENSG00000005339				67	0	0	63	12	16
GLIS2	0	genome.wustl.edu	37	16	4384870	4384870	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	16	4384870	4384870	C	T	SNP	GLIS2	ENST00000262366	human	ensembl	74_37	+1	known	silent	c.414	p.S138	0.006	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLIS2	HGNC	ENSG00000126603				83	0	0	92	5	5.15464
PPL	0	genome.wustl.edu	37	16	4935616	4935616	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	16	4935616	4935616	G	A	SNP	PPL	ENST00000345988	human	ensembl	74_37	-1	known	missense	c.3040	p.R1014W	0.333	NULL	pfam_Plectin_repeat,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	PPL	HGNC	ENSG00000118898				129	0	0	126	33	20.7547
SALL1	0	genome.wustl.edu	37	16	51175655	51175655	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	16	51175655	51175655	C	T	SNP	SALL1	ENST00000251020	human	ensembl	74_37	-1	known	missense	c.478	p.G160S	0.005	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SALL1	HGNC	ENSG00000103449				56	0	0	56	11	16.4179
RPGRIP1L	0	genome.wustl.edu	37	16	53720489	53720489	+	Splice_Site	SNP	C	C	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	16	53720489	53720489	C	G	SNP	RPGRIP1L	ENST00000379925	human	ensembl	74_37	-1	known	splice_site	c.633-1	e5-1	1.000	-	-	-	no_errors	RPGRIP1L	HGNC	ENSG00000103494				110	0	0	73	7	8.75
BBS2	0	genome.wustl.edu	37	16	56536710	56536710	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	16	56536710	56536710	C	T	SNP	BBS2	ENST00000245157	human	ensembl	74_37	-1	known	missense	c.815	p.R272Q	1.000	superfamily_WD40_repeat_dom,pirsf_Bardet-Biedl_syndrome_2_prot	superfamily_WD40_repeat_dom,pirsf_Bardet-Biedl_syndrome_2_prot	-	no_errors	BBS2	HGNC	ENSG00000125124				61	0	0	43	8	15.6863
GPR97	0	genome.wustl.edu	37	16	57713135	57713135	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	16	57713135	57713135	G	A	SNP	GPR97	ENST00000333493	human	ensembl	74_37	+1	known	missense	c.539	p.R180H	0.001	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like,prints_GPCR_2_orphan_rcpt_GPR56	-	no_errors	GPR97	HGNC	ENSG00000182885				121	0	0	78	25	24.2718
CMTM1	0	genome.wustl.edu	37	16	66600506	66600506	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	16	66600506	66600506	C	T	SNP	CMTM1	ENST00000332695	human	ensembl	74_37	+1	known	silent	c.90	p.S30	0.000	NULL	NULL	-	no_errors	CMTM1	HGNC	ENSG00000089505				74	0	0	94	6	6
ELMO3	0	genome.wustl.edu	37	16	67235910	67235910	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	16	67235910	67235910	G	A	SNP	ELMO3	ENST00000393997	human	ensembl	74_37	+1	known	missense	c.1240	p.V414M	0.940	pfam_Engulfment_cell_motility_ELMO	pfam_DUF3361,pfam_Engulfment_cell_motility_ELMO,superfamily_ARM-type_fold	-	no_errors	ELMO3	HGNC	ENSG00000102890				83	0	0	84	24	22.2222
ACD	0	genome.wustl.edu	37	16	67692248	67692248	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	16	67692248	67692248	C	T	SNP	ACD	ENST00000393919	human	ensembl	74_37	-1	known	missense	c.1105	p.G369S	0.000	NULL	NULL	-	no_errors	ACD	HGNC	ENSG00000102977				52	0	0	66	5	7.04225
CDH1	0	genome.wustl.edu	37	16	68844099	68844099	+	Splice_Site	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	16	68844099	68844099	G	A	SNP	CDH1	ENST00000261769	human	ensembl	74_37	+1	known	splice_site	c.688-1	e6-1	1.000	-	-	-	no_errors	CDH1	HGNC	ENSG00000039068				187	0	0	207	22	9.60699
DDX19B	0	genome.wustl.edu	37	16	70351442	70351442	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	16	70351442	70351442	C	T	SNP	DDX19B	ENST00000288071	human	ensembl	74_37	+1	known	missense	c.340	p.R114C	1.000	smart_Helicase_ATP-bd,pfscan_RNA_helicase_DEAD_Q_motif	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX19B	HGNC	ENSG00000157349				126	0	0	75	13	14.7727
DDX19A	0	genome.wustl.edu	37	16	70384460	70384460	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	16	70384460	70384460	A	C	SNP	DDX19A	ENST00000302243	human	ensembl	74_37	+1	known	missense	c.58	p.M20L	1.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX19A	HGNC	ENSG00000168872				59	0	0	36	6	14.2857
COG4	0	genome.wustl.edu	37	16	70524291	70524291	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	16	70524291	70524291	G	T	SNP	COG4	ENST00000323786	human	ensembl	74_37	-1	known	missense	c.1652	p.T551N	1.000	NULL	pfam_COG_su4,smart_COG_su4	-	no_errors	COG4	HGNC	ENSG00000103051				101	0	0	85	6	6.59341
WDR90	0	genome.wustl.edu	37	16	711649	711649	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	16	711649	711649	C	T	SNP	WDR90	ENST00000549091	human	ensembl	74_37	+1	novel	silent	c.3726	p.L1242	0.000	superfamily_Quinonprotein_ADH-like_supfam,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_DUF667,pfam_Nucleoporin_Nup160,superfamily_Quinonprotein_ADH-like_supfam,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR90	HGNC	ENSG00000161996				53	0	0	74	4	5.12821
WDR90	0	genome.wustl.edu	37	16	715671	715671	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	16	715671	715671	T	C	SNP	WDR90	ENST00000315764	human	ensembl	74_37	+1	known	missense	c.101	p.F34S	0.002	smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR90	HGNC	ENSG00000161996				66	0	0	73	6	7.59494
DHX38	0	genome.wustl.edu	37	16	72138492	72138492	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	16	72138492	72138492	C	T	SNP	DHX38	ENST00000268482	human	ensembl	74_37	+1	known	silent	c.2118	p.G706	0.115	superfamily_P-loop_NTPase,smart_Helicase_ATP-bd	pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX38	HGNC	ENSG00000140829				184	0	0	146	32	17.9775
ZFHX3	0	genome.wustl.edu	37	16	72991559	72991559	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	16	72991559	72991559	A	G	SNP	ZFHX3	ENST00000268489	human	ensembl	74_37	-1	known	missense	c.2486	p.M829T	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX3	HGNC	ENSG00000140836				172	0	0	146	44	23.1579
ZFHX3	0	genome.wustl.edu	37	16	72993336	72993336	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	16	72993336	72993336	G	A	SNP	ZFHX3	ENST00000268489	human	ensembl	74_37	-1	known	nonsense	c.709	p.R237*	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX3	HGNC	ENSG00000140836				170	0	0	155	13	7.7381
GAN	0	genome.wustl.edu	37	16	81398592	81398592	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	16	81398592	81398592	C	T	SNP	GAN	ENST00000568107	human	ensembl	74_37	+1	known	missense	c.1250	p.A417V	1.000	smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	GAN	HGNC	ENSG00000261609				98	0	0	90	6	6.25
ZC3H18	0	genome.wustl.edu	37	16	88675419	88675419	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	16	88675419	88675419	G	T	SNP	ZC3H18	ENST00000301011	human	ensembl	74_37	+1	known	missense	c.1166	p.R389M	1.000	NULL	smart_Znf_CCCH	-	no_errors	ZC3H18	HGNC	ENSG00000158545				151	0	0	98	23	19.0083
MYH8	0	genome.wustl.edu	37	17	10304654	10304654	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	17	10304654	10304654	C	A	SNP	MYH8	ENST00000403437	human	ensembl	74_37	-1	known	nonsense	c.3046	p.E1016*	1.000	NULL	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_t-SNARE,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH8	HGNC	ENSG00000133020				274	0	0	162	48	22.8571
MYH1	0	genome.wustl.edu	37	17	10399358	10399358	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	17	10399358	10399358	C	T	SNP	MYH1	ENST00000226207	human	ensembl	74_37	-1	known	missense	c.5078	p.R1693Q	1.000	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH1	HGNC	ENSG00000109061				119	1	0.833333	88	18	16.9811
ARHGAP44	0	genome.wustl.edu	37	17	12847420	12847420	+	Silent	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	17	12847420	12847420	G	A	SNP	ARHGAP44	ENST00000379672	human	ensembl	74_37	+1	known	silent	c.768	p.P256	0.369	superfamily_Rho_GTPase_activation_prot,pfscan_RhoGAP_dom	pfam_BAR_dom,pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_BAR_dom,smart_RhoGAP_dom,pfscan_BAR_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP44	HGNC	ENSG00000006740				45	0	0	39	14	26.4151
PRPF8	0	genome.wustl.edu	37	17	1576732	1576732	+	Silent	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	17	1576732	1576732	G	A	SNP	PRPF8	ENST00000304992	human	ensembl	74_37	-1	known	silent	c.3576	p.F1192	0.999	superfamily_Cupredoxin	pfam_PROCN,pfam_PRP8_domainIV,pfam_Prp8_U6-snRNA-bd,pfam_PRO8NT,pfam_Prp8_U5-snRNA-bd,pfam_PROCT,pfam_RRM_spliceosomal_PrP8,pfam_JAB_MPN_dom,superfamily_Cupredoxin,superfamily_Histone-fold,smart_JAB_MPN_dom	-	no_errors	PRPF8	HGNC	ENSG00000174231				77	0	0	69	19	21.5909
ZNF287	0	genome.wustl.edu	37	17	16455348	16455348	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	17	16455348	16455348	G	T	SNP	ZNF287	ENST00000395824	human	ensembl	74_37	-1	known	missense	c.2108	p.P703H	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF287	HGNC	ENSG00000141040				123	0	0	83	11	11.7021
MPRIP	0	genome.wustl.edu	37	17	17030083	17030083	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	17	17030083	17030083	G	A	SNP	MPRIP	ENST00000395811	human	ensembl	74_37	+1	known	missense	c.335	p.R112H	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Pleckstrin_homology,superfamily_Ferritin-like_SF,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	MPRIP	HGNC	ENSG00000133030				83	0	0	73	5	6.41026
MYO15A	0	genome.wustl.edu	37	17	18058523	18058523	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	17	18058523	18058523	G	A	SNP	MYO15A	ENST00000205890	human	ensembl	74_37	+1	known	missense	c.8324	p.R2775H	1.000	NULL	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_SH3_2,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_SH3_domain,smart_Band_41_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO15A	HGNC	ENSG00000091536				30	0	0	39	3	7.14286
RTN4RL1	0	genome.wustl.edu	37	17	1840671	1840671	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	17	1840671	1840671	G	A	SNP	RTN4RL1	ENST00000331238	human	ensembl	74_37	-1	known	missense	c.445	p.H149Y	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	RTN4RL1	HGNC	ENSG00000185924				73	0	0	65	20	23.5294
EPN2	0	genome.wustl.edu	37	17	19232061	19232061	+	Silent	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	17	19232061	19232061	G	A	SNP	EPN2	ENST00000314728	human	ensembl	74_37	+1	known	silent	c.1185	p.V395	0.014	NULL	pfam_Epsin_dom_N,pfam_ANTH_dom,superfamily_ENTH_VHS,smart_Epsin-like_N,smart_Ubiquitin-int_motif,pfscan_Epsin-like_N,pfscan_Ubiquitin-int_motif	-	no_errors	EPN2	HGNC	ENSG00000072134				61	0	0	105	6	5.40541
HIC1	0	genome.wustl.edu	37	17	1960262	1960262	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	17	1960262	1960262	C	T	SNP	HIC1	ENST00000322941	human	ensembl	74_37	+1	known	missense	c.335	p.A112V	0.387	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	HIC1	HGNC	ENSG00000177374				8	0	0	16	4	20
HIC1	0	genome.wustl.edu	37	17	1961289	1961289	+	Silent	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	17	1961289	1961289	G	A	SNP	HIC1	ENST00000322941	human	ensembl	74_37	+1	known	silent	c.1362	p.A454	0.922	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	HIC1	HGNC	ENSG00000177374				21	0	0	22	4	15.3846
TMEM11	0	genome.wustl.edu	37	17	21101784	21101784	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	17	21101784	21101784	C	T	SNP	TMEM11	ENST00000317635	human	ensembl	74_37	-1	known	silent	c.432	p.S144	0.779	NULL	NULL	-	no_errors	TMEM11	HGNC	ENSG00000178307				120	0	0	118	29	19.7279
MAP2K3	0	genome.wustl.edu	37	17	21207775	21207775	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	17	21207775	21207775	C	T	SNP	MAP2K3	ENST00000342679	human	ensembl	74_37	+1	known	silent	c.606	p.G202	0.994	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP2K3	HGNC	ENSG00000034152				69	0	0	73	10	12.0482
UBBP4	0	genome.wustl.edu	37	17	21731270	21731270	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	17	21731270	21731270	T	C	SNP	UBBP4	ENST00000584755	human	ensembl	74_37	+1	novel	missense	c.572	p.I191T	1.000	smart_Ubiquitin_dom	pfam_Ubiquitin_dom,pfam_Rad60/SUMO_like,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup,prints_Ubiquitin	-	no_errors	UBBP4	HGNC	ENSG00000263563				111	0	0	122	9	6.87023
SGSM2	0	genome.wustl.edu	37	17	2282757	2282757	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	17	2282757	2282757	C	G	SNP	SGSM2	ENST00000268989	human	ensembl	74_37	+1	known	missense	c.3099	p.I1033M	1.000	superfamily_Rab-GTPase-TBC_dom	pfam_Run,pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Run,smart_Rab-GTPase-TBC_dom,pfscan_Run,pfscan_Rab-GTPase-TBC_dom	-	no_errors	SGSM2	HGNC	ENSG00000141258				40	0	0	43	16	27.1186
NOS2	0	genome.wustl.edu	37	17	26105983	26105983	+	Silent	SNP	G	G	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	17	26105983	26105983	G	T	SNP	NOS2	ENST00000313735	human	ensembl	74_37	-1	known	silent	c.1104	p.P368	0.964	pfam_NO_synthase_oxygenase_dom,superfamily_NO_synthase_oxygenase_dom,pirsf_NOS_euk	pfam_NO_synthase_oxygenase_dom,pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,superfamily_NO_synthase_oxygenase_dom,superfamily_Riboflavin_synthase-like_b-brl,pirsf_NOS_euk,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	NOS2	HGNC	ENSG00000007171				94	0	0	96	29	23.2
NOS2	0	genome.wustl.edu	37	17	26107891	26107891	+	Silent	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	17	26107891	26107891	G	A	SNP	NOS2	ENST00000313735	human	ensembl	74_37	-1	known	silent	c.906	p.F302	0.983	pfam_NO_synthase_oxygenase_dom,superfamily_NO_synthase_oxygenase_dom,pirsf_NOS_euk	pfam_NO_synthase_oxygenase_dom,pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,superfamily_NO_synthase_oxygenase_dom,superfamily_Riboflavin_synthase-like_b-brl,pirsf_NOS_euk,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	NOS2	HGNC	ENSG00000007171				65	0	0	52	19	26.7606
NOS2	0	genome.wustl.edu	37	17	26108173	26108173	+	Silent	SNP	A	A	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	17	26108173	26108173	A	G	SNP	NOS2	ENST00000313735	human	ensembl	74_37	-1	known	silent	c.753	p.S251	0.005	pfam_NO_synthase_oxygenase_dom,superfamily_NO_synthase_oxygenase_dom,pirsf_NOS_euk	pfam_NO_synthase_oxygenase_dom,pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,superfamily_NO_synthase_oxygenase_dom,superfamily_Riboflavin_synthase-like_b-brl,pirsf_NOS_euk,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	NOS2	HGNC	ENSG00000007171				76	0	0	87	7	7.44681
C17orf97	0	genome.wustl.edu	37	17	263291	263291	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	17	263291	263291	C	T	SNP	C17orf97	ENST00000360127	human	ensembl	74_37	+1	known	silent	c.657	p.P219	0.000	NULL	NULL	-	no_errors	C17orf97	HGNC	ENSG00000187624				32	0	0	34	17	33.3333
SLC13A2	0	genome.wustl.edu	37	17	26820707	26820707	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	17	26820707	26820707	A	C	SNP	SLC13A2	ENST00000444914	human	ensembl	74_37	+1	known	missense	c.1144	p.S382R	0.304	pfam_Na/sul_symport	pfam_Na/sul_symport,pfam_Cit_transptr-like_dom	-	no_errors	SLC13A2	HGNC	ENSG00000007216				120	0	0	98	8	7.54717
TRAF4	0	genome.wustl.edu	37	17	27071132	27071132	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	17	27071132	27071132	T	C	SNP	TRAF4	ENST00000262395	human	ensembl	74_37	+1	known	missense	c.2	p.M1T	1.000	pirsf_TNF_rcpt--assoc_TRAF	pfam_MATH,pfam_Znf_C3HC4_RING-type,superfamily_TRAF-like,smart_Znf_RING,smart_MATH,pirsf_TNF_rcpt--assoc_TRAF,pfscan_MATH,pfscan_Znf_RING,pfscan_Znf_TRAF	-	no_errors	TRAF4	HGNC	ENSG00000076604				24	0	0	21	6	22.2222
CRYBA1	0	genome.wustl.edu	37	17	27579207	27579207	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	17	27579207	27579207	G	A	SNP	CRYBA1	ENST00000225387	human	ensembl	74_37	+1	known	missense	c.341	p.R114H	1.000	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	CRYBA1	HGNC	ENSG00000108255				49	0	0	52	14	21.2121
AATF	0	genome.wustl.edu	37	17	35306443	35306443	+	Silent	SNP	C	C	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	17	35306443	35306443	C	A	SNP	AATF	ENST00000225402	human	ensembl	74_37	+1	known	silent	c.18	p.P6	0.189	NULL	pfam_AATF_C	-	no_errors	AATF	HGNC	ENSG00000108270				17	0	0	10	5	33.3333
SYNRG	0	genome.wustl.edu	37	17	35921614	35921614	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	17	35921614	35921614	A	C	SNP	SYNRG	ENST00000339208	human	ensembl	74_37	-1	known	missense	c.1559	p.I520S	1.000	NULL	smart_EPS15_homology,pfscan_EPS15_homology	-	no_errors	SYNRG	HGNC	ENSG00000006114				79	0	0	34	13	27.6596
GSG2	0	genome.wustl.edu	37	17	3629365	3629365	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	17	3629365	3629365	C	T	SNP	GSG2	ENST00000325418	human	ensembl	74_37	+1	known	silent	c.2136	p.T712	0.789	pfam_DUF3635,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	pfam_DUF3635,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	-	no_errors	GSG2	HGNC	ENSG00000177602				79	0	0	68	25	26.8817
PCGF2	0	genome.wustl.edu	37	17	36895090	36895090	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	17	36895090	36895090	C	T	SNP	PCGF2	ENST00000360797	human	ensembl	74_37	-1	known	missense	c.341	p.R114H	0.841	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	PCGF2	HGNC	ENSG00000056661				76	0	0	57	17	22.973
CDK12	0	genome.wustl.edu	37	17	37650838	37650838	+	Silent	SNP	A	A	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	17	37650838	37650838	A	G	SNP	CDK12	ENST00000447079	human	ensembl	74_37	+1	known	silent	c.2310	p.T770	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDK12	HGNC	ENSG00000167258				28	0	0	21	7	25
ERBB2	0	genome.wustl.edu	37	17	37881000	37881000	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	17	37881000	37881000	G	A	SNP	ERBB2	ENST00000269571	human	ensembl	74_37	+1	known	missense	c.2329	p.V777M	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	ERBB2	HGNC	ENSG00000141736				87	0	0	63	19	23.1707
SMARCE1	0	genome.wustl.edu	37	17	38792295	38792295	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	17	38792295	38792295	T	C	SNP	SMARCE1	ENST00000348513	human	ensembl	74_37	-1	known	missense	c.429	p.I143M	1.000	NULL	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	SMARCE1	HGNC	ENSG00000073584				179	0	0	116	19	14.0741
KRT39	0	genome.wustl.edu	37	17	39116718	39116718	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	17	39116718	39116718	C	T	SNP	KRT39	ENST00000355612	human	ensembl	74_37	-1	known	silent	c.1032	p.E344	0.993	pfam_IF	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT39	HGNC	ENSG00000196859				245	0	0	223	14	5.90717
KRTAP9-9	0	genome.wustl.edu	37	17	39412120	39412120	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	17	39412120	39412120	C	T	SNP	KRTAP9-9	ENST00000394008	human	ensembl	74_37	+1	known	silent	c.483	p.S161	0.737	NULL	NULL	-	no_errors	KRTAP9-9	HGNC	ENSG00000198083				220	0	0	220	59	21.147
ZZEF1	0	genome.wustl.edu	37	17	3980228	3980228	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	17	3980228	3980228	C	T	SNP	ZZEF1	ENST00000381638	human	ensembl	74_37	-1	known	silent	c.3045	p.Q1015	0.998	NULL	pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,superfamily_CUB_dom,smart_EF_hand_dom,smart_Znf_ZZ,pfscan_EF_hand_dom,pfscan_Znf_ZZ	-	no_errors	ZZEF1	HGNC	ENSG00000074755				93	0	0	51	10	16.3934
JUP	0	genome.wustl.edu	37	17	39919526	39919526	+	Silent	SNP	C	C	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	17	39919526	39919526	C	A	SNP	JUP	ENST00000310706	human	ensembl	74_37	-1	known	silent	c.1206	p.V402	1.000	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo,prints_Beta-catenin	-	no_errors	JUP	HGNC	ENSG00000173801				72	0	0	74	7	8.64198
JUP	0	genome.wustl.edu	37	17	39925267	39925267	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	17	39925267	39925267	C	T	SNP	JUP	ENST00000310706	human	ensembl	74_37	-1	known	missense	c.661	p.A221T	0.885	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo,prints_Beta-catenin	-	no_errors	JUP	HGNC	ENSG00000173801				28	0	0	14	2	12.5
STAT5B	0	genome.wustl.edu	37	17	40375517	40375517	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	17	40375517	40375517	T	C	SNP	STAT5B	ENST00000293328	human	ensembl	74_37	-1	known	missense	c.433	p.N145D	1.000	pfam_STAT_TF_alpha,superfamily_STAT_TF_coiled-coil	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,smart_SH2,pfscan_SH2	-	no_errors	STAT5B	HGNC	ENSG00000173757				110	0	0	101	19	15.8333
NAGLU	0	genome.wustl.edu	37	17	40690692	40690692	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	17	40690692	40690692	G	A	SNP	NAGLU	ENST00000225927	human	ensembl	74_37	+1	known	missense	c.683	p.R228Q	0.934	pfam_NAGLU_tim-barrel,superfamily_Glycoside_hydrolase_SF	pfam_NAGLU_tim-barrel,superfamily_Glycoside_hydrolase_SF	-	no_errors	NAGLU	HGNC	ENSG00000108784				57	0	0	60	18	23.0769
MLX	0	genome.wustl.edu	37	17	40723569	40723569	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	17	40723569	40723569	T	C	SNP	MLX	ENST00000246912	human	ensembl	74_37	+1	known	missense	c.845	p.L282P	0.996	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	MLX	HGNC	ENSG00000108788				217	0	0	163	46	22.0096
ANKFY1	0	genome.wustl.edu	37	17	4139185	4139185	+	Silent	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	17	4139185	4139185	G	A	SNP	ANKFY1	ENST00000570535	human	ensembl	74_37	-1	known	silent	c.330	p.S110	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_Ankyrin_rpt,pfam_Znf_FYVE,pfam_BTB_POZ,superfamily_Ankyrin_rpt-contain_dom,superfamily_BTB/POZ_fold,superfamily_Znf_FYVE_PHD,smart_BTB/POZ-like,smart_Ankyrin_rpt,smart_Znf_FYVE,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_BTB/POZ-like,pfscan_Znf_FYVE-rel,prints_Ankyrin_rpt	-	no_errors	ANKFY1	HGNC	ENSG00000185722				145	0	0	135	34	20.1183
PLEKHM1	0	genome.wustl.edu	37	17	43516967	43516967	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	17	43516967	43516967	C	T	SNP	PLEKHM1	ENST00000430334	human	ensembl	74_37	-1	known	missense	c.2935	p.A979T	0.081	NULL	pfam_Run,superfamily_Znf_FYVE_PHD,smart_Run,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Pleckstrin_homology,pfscan_Run,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	PLEKHM1	HGNC	ENSG00000225190				68	0	0	47	11	18.9655
XYLT2	0	genome.wustl.edu	37	17	48437638	48437638	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	17	48437638	48437638	G	A	SNP	XYLT2	ENST00000017003	human	ensembl	74_37	+1	known	missense	c.2584	p.G862R	1.000	NULL	pfam_XylT,pfam_Glyco_trans_14	-	no_errors	XYLT2	HGNC	ENSG00000015532				20	0	0	28	5	15.1515
RNF167	0	genome.wustl.edu	37	17	4846555	4846555	+	Silent	SNP	G	G	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	17	4846555	4846555	G	T	SNP	RNF167	ENST00000262482	human	ensembl	74_37	+1	known	silent	c.552	p.L184	0.998	NULL	pfam_Protease-assoc_domain,pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF167	HGNC	ENSG00000108523				63	0	0	50	12	19.3548
MYCBPAP	0	genome.wustl.edu	37	17	48598498	48598498	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	17	48598498	48598498	A	G	SNP	MYCBPAP	ENST00000323776	human	ensembl	74_37	+1	known	missense	c.1073	p.Y358C	1.000	NULL	NULL	-	no_errors	MYCBPAP	HGNC	ENSG00000136449				32	0	0	20	9	31.0345
CAMTA2	0	genome.wustl.edu	37	17	4876222	4876222	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	17	4876222	4876222	G	A	SNP	CAMTA2	ENST00000414043	human	ensembl	74_37	-1	known	missense	c.2414	p.A805V	0.997	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	pfam_CG-1_dom,pfam_IPT,pfam_IQ_motif_EF-hand-BS,superfamily_Ig_E-set,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	CAMTA2	HGNC	ENSG00000108509				111	0	0	116	10	7.93651
WFIKKN2	0	genome.wustl.edu	37	17	48913367	48913367	+	Silent	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	17	48913367	48913367	G	A	SNP	WFIKKN2	ENST00000311378	human	ensembl	74_37	+1	known	silent	c.69	p.L23	1.000	NULL	pfam_Prot_inh_Kunz-m,pfam_Ig_I-set,pfam_Netrin_module_non-TIMP,pfam_WAP-type_4-diS_core,pfam_Kazal_dom,pfam_Ig_V-set,superfamily_TIMP-like_OB-fold,superfamily_Prot_inh_Kunz-m,superfamily_WAP-type_4-diS_core,smart_WAP-type_4-diS_core,smart_Ig_sub,smart_Ig_sub2,smart_Prot_inh_Kunz-m,pfscan_Netrin_domain,pfscan_Prot_inh_Kunz-m,pfscan_Ig-like_dom,prints_Prot_inh_Kunz-m	-	no_errors	WFIKKN2	HGNC	ENSG00000173714				17	0	0	18	6	25
NLRP1	0	genome.wustl.edu	37	17	5437297	5437297	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	17	5437297	5437297	A	G	SNP	NLRP1	ENST00000572272	human	ensembl	74_37	-1	known	missense	c.2972	p.V991A	0.000	NULL	pfam_CARD,pfam_DAPIN,pfam_Leu-rich_rpt,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_CARD,pfscan_DAPIN,prints_Disease_R	-	no_errors	NLRP1	HGNC	ENSG00000091592				244	0	0	221	46	17.2285
TRIM25	0	genome.wustl.edu	37	17	54969487	54969487	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	17	54969487	54969487	C	T	SNP	TRIM25	ENST00000316881	human	ensembl	74_37	-1	known	silent	c.1467	p.R489	0.888	superfamily_ConA-like_lec_gl_sf,smart_PRY,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM25	HGNC	ENSG00000121060				94	0	0	62	5	7.46269
EPX	0	genome.wustl.edu	37	17	56276417	56276417	+	Silent	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	17	56276417	56276417	G	A	SNP	EPX	ENST00000225371	human	ensembl	74_37	+1	known	silent	c.1137	p.T379	0.000	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	-	no_errors	EPX	HGNC	ENSG00000121053				51	0	0	38	12	24
SEPT4	0	genome.wustl.edu	37	17	56599209	56599209	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	17	56599209	56599209	C	A	SNP	SEPT4	ENST00000457347	human	ensembl	74_37	-1	known	missense	c.848	p.R283L	1.000	pfam_Cell_div_GTP-bd,superfamily_P-loop_NTPase	pfam_Cell_div_GTP-bd,superfamily_P-loop_NTPase	-	no_errors	SEPT4	HGNC	ENSG00000108387				61	0	0	59	4	6.34921
TBC1D3P2	0	genome.wustl.edu	37	17	60342454	60342454	+	RNA	SNP	T	T	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	17	60342454	60342454	T	G	SNP	TBC1D3P2	ENST00000581291	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.117	-	-	-	no_errors	TBC1D3P2	HGNC	ENSG00000188755				128	0	0	134	9	6.29371
MRC2	0	genome.wustl.edu	37	17	60743600	60743600	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	17	60743600	60743600	C	T	SNP	MRC2	ENST00000303375	human	ensembl	74_37	+1	known	silent	c.666	p.D222	0.677	pfam_FN_type2_col-bd,superfamily_Kringle-like,smart_FN_type2_col-bd,pfscan_FN_type2_col-bd	pfam_C-type_lectin,pfam_FN_type2_col-bd,pfam_Herpes_UL45-like,superfamily_C-type_lectin_fold,superfamily_Ricin_B_lectin,superfamily_Kringle-like,smart_Ricin_B_lectin,smart_FN_type2_col-bd,smart_C-type_lectin,pfscan_FN_type2_col-bd,pfscan_C-type_lectin,pfscan_Ricin_B_lectin,prints_AntifreezeII	-	no_errors	MRC2	HGNC	ENSG00000011028				18	0	0	11	5	31.25
TANC2	0	genome.wustl.edu	37	17	61498207	61498207	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	17	61498207	61498207	G	A	SNP	TANC2	ENST00000424789	human	ensembl	74_37	+1	known	missense	c.4864	p.V1622I	0.993	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,smart_Ankyrin_rpt,smart_TPR_repeat,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Ankyrin_rpt	-	no_errors	TANC2	HGNC	ENSG00000170921				120	0	0	121	25	17.1233
MAP3K3	0	genome.wustl.edu	37	17	61744414	61744414	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	17	61744414	61744414	T	C	SNP	MAP3K3	ENST00000361357	human	ensembl	74_37	+1	known	missense	c.589	p.S197P	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_OPR_PB1,superfamily_Kinase-like_dom,smart_OPR_PB1,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MAP3K3	HGNC	ENSG00000198909				102	0	0	87	7	7.44681
GH2	0	genome.wustl.edu	37	17	61957644	61957644	+	Silent	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	17	61957644	61957644	G	A	SNP	GH2	ENST00000456543	human	ensembl	74_37	-1	known	silent	c.687	p.C229	0.000	NULL	pfam_Somatotropin,superfamily_4_helix_cytokine-like_core,prints_Somatotropin	-	no_errors	GH2	HGNC	ENSG00000136487				37	0	0	38	12	24
TEX2	0	genome.wustl.edu	37	17	62291431	62291431	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	17	62291431	62291431	C	A	SNP	TEX2	ENST00000258991	human	ensembl	74_37	-1	known	missense	c.147	p.E49D	1.000	NULL	pfam_DUF2404	-	no_errors	TEX2	HGNC	ENSG00000136478				103	0	0	106	17	13.8211
RGS9	0	genome.wustl.edu	37	17	63156438	63156438	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	17	63156438	63156438	G	A	SNP	RGS9	ENST00000262406	human	ensembl	74_37	+1	known	missense	c.293	p.G98D	0.032	pfam_DEP_dom,smart_DEP_dom,pfscan_DEP_dom	pfam_RGS_dom,pfam_G-protein_gamma-like_dom,pfam_DEP_dom,superfamily_Regulat_G_prot_signal_superfam,superfamily_G-protein_gamma-like_dom,smart_DEP_dom,smart_G-protein_gamma-like_dom,smart_Regulat_G_prot_signal_superfam,pfscan_DEP_dom,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS9	HGNC	ENSG00000108370				84	0	0	70	18	20.4545
SLC16A11	0	genome.wustl.edu	37	17	6945994	6945994	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	17	6945994	6945994	C	T	SNP	SLC16A11	ENST00000308009	human	ensembl	74_37	-1	known	silent	c.507	p.A169	0.363	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A11	HGNC	ENSG00000174326				10	0	0	5	5	50
FAM104A	0	genome.wustl.edu	37	17	71205647	71205647	+	RNA	SNP	A	A	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	17	71205647	71205647	A	G	SNP	FAM104A	ENST00000583178	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	FAM104A	HGNC	ENSG00000133193				14	0	0	5	3	37.5
SDK2	0	genome.wustl.edu	37	17	71426743	71426743	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	17	71426743	71426743	C	T	SNP	SDK2	ENST00000392650	human	ensembl	74_37	-1	known	missense	c.1490	p.R497H	1.000	pfam_Ig_I-set,pfscan_Ig-like_dom	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	SDK2	HGNC	ENSG00000069188				21	0	0	9	8	47.0588
SLC2A4	0	genome.wustl.edu	37	17	7186847	7186847	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	17	7186847	7186847	C	T	SNP	SLC2A4	ENST00000317370	human	ensembl	74_37	+1	known	missense	c.206	p.P69L	0.761	pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,prints_Glc_transpt_4,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,prints_Sugar/inositol_transpt,prints_Glc_transpt_4,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	-	no_errors	SLC2A4	HGNC	ENSG00000181856				143	0	0	127	19	13.0137
NEURL4	0	genome.wustl.edu	37	17	7221114	7221114	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	17	7221114	7221114	T	C	SNP	NEURL4	ENST00000399464	human	ensembl	74_37	-1	known	missense	c.4198	p.N1400D	1.000	NULL	pfam_Neu_Z,superfamily_ConA-like_lec_gl_sf,smart_Neu_Z,pfscan_Neu_Z	-	no_errors	NEURL4	HGNC	ENSG00000215041				51	0	0	65	6	8.4507
TTYH2	0	genome.wustl.edu	37	17	72245498	72245498	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	17	72245498	72245498	A	G	SNP	TTYH2	ENST00000269346	human	ensembl	74_37	+1	known	missense	c.890	p.Y297C	1.000	pfam_Tweety	pfam_Tweety	-	no_errors	TTYH2	HGNC	ENSG00000141540				205	0	0	165	46	21.8009
GPR142	0	genome.wustl.edu	37	17	72368072	72368072	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	17	72368072	72368072	C	T	SNP	GPR142	ENST00000335666	human	ensembl	74_37	+1	known	missense	c.722	p.A241V	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR142	HGNC	ENSG00000257008				50	0	0	35	8	18.6047
CD300A	0	genome.wustl.edu	37	17	72470778	72470778	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	17	72470778	72470778	C	A	SNP	CD300A	ENST00000360141	human	ensembl	74_37	+1	known	missense	c.487	p.H163N	0.000	NULL	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	CD300A	HGNC	ENSG00000167851				67	0	0	67	17	20.2381
KCTD11	0	genome.wustl.edu	37	17	7256534	7256534	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	17	7256534	7256534	C	T	SNP	KCTD11	ENST00000333751	human	ensembl	74_37	+1	known	silent	c.273	p.H91	0.988	NULL	pfam_T1-type_BTB,superfamily_BTB/POZ_fold	-	no_errors	KCTD11	HGNC	ENSG00000213859				47	0	0	57	15	20.8333
NUP85	0	genome.wustl.edu	37	17	73229063	73229063	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	17	73229063	73229063	G	A	SNP	NUP85	ENST00000245544	human	ensembl	74_37	+1	known	missense	c.1514	p.R505K	1.000	pfam_Nucleoporin_Nup85	pfam_Nucleoporin_Nup85	-	no_errors	NUP85	HGNC	ENSG00000125450				104	0	0	112	23	17.037
ZBTB4	0	genome.wustl.edu	37	17	7366640	7366640	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	17	7366640	7366640	G	A	SNP	ZBTB4	ENST00000311403	human	ensembl	74_37	-1	known	missense	c.1661	p.T554M	0.017	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB4	HGNC	ENSG00000174282				18	0	0	22	5	18.5185
ZBTB4	0	genome.wustl.edu	37	17	7369845	7369845	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	17	7369845	7369845	C	T	SNP	ZBTB4	ENST00000311403	human	ensembl	74_37	-1	known	silent	c.276	p.S92	0.013	superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB4	HGNC	ENSG00000174282				38	0	0	23	11	32.3529
ITGB4	0	genome.wustl.edu	37	17	73753308	73753308	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	17	73753308	73753308	C	G	SNP	ITGB4	ENST00000200181	human	ensembl	74_37	+1	known	missense	c.5246	p.A1749G	0.000	pirsf_Integrin_bsu-4	pirsf_Integrin_bsu-4,pfam_Integrin_bsu_N,pfam_Fibronectin_type3,pfam_Calx_beta,pfam_Integrin_bsu_tail,pfam_EGF_extracell,superfamily_Fibronectin_type3,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like_fold,smart_Integrin_bsu_N,smart_Calx_beta,smart_Fibronectin_type3,prints_Integrin_bsu,pfscan_Fibronectin_type3	-	no_errors	ITGB4	HGNC	ENSG00000132470				97	0	0	91	20	18.018
RNF157	0	genome.wustl.edu	37	17	74151699	74151699	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	17	74151699	74151699	C	T	SNP	RNF157	ENST00000269391	human	ensembl	74_37	-1	known	missense	c.1642	p.G548R	1.000	NULL	smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF157	HGNC	ENSG00000141576				61	0	0	39	10	20.4082
TNFSF12-TNFSF13	0	genome.wustl.edu	37	17	7463187	7463187	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	17	7463187	7463187	T	C	SNP	TNFSF12-TNFSF13	ENST00000293826	human	ensembl	74_37	+1	known	missense	c.602	p.V201A	1.000	superfamily_Tumour_necrosis_fac-like_dom,smart_TNF_dom,pfscan_TNF_dom	pfam_TNF_dom,superfamily_Tumour_necrosis_fac-like_dom,smart_TNF_dom,pfscan_TNF_dom	-	no_errors	TNFSF12-TNFSF13	HGNC	ENSG00000248871				98	0	0	95	24	20.1681
C1QTNF1	0	genome.wustl.edu	37	17	77040120	77040120	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	17	77040120	77040120	C	A	SNP	C1QTNF1	ENST00000354124	human	ensembl	74_37	+1	known	missense	c.100	p.L34M	0.772	NULL	pfam_C1q,pfam_Collagen,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	C1QTNF1	HGNC	ENSG00000173918				78	0	0	64	19	22.8916
CCDC40	0	genome.wustl.edu	37	17	78011966	78011966	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	17	78011966	78011966	G	A	SNP	CCDC40	ENST00000397545	human	ensembl	74_37	+1	known	missense	c.74	p.G25E	0.000	NULL	pfam_E3_ubiquit_lig_BRE1	-	no_errors	CCDC40	HGNC	ENSG00000141519				50	0	0	21	5	19.2308
ZNF750	0	genome.wustl.edu	37	17	80788060	80788060	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	17	80788060	80788060	C	T	SNP	ZNF750	ENST00000269394	human	ensembl	74_37	-1	known	silent	c.2130	p.T710	0.000	NULL	NULL	-	no_errors	ZNF750	HGNC	ENSG00000141579				91	0	0	93	21	18.4211
CIDEA	0	genome.wustl.edu	37	18	12274251	12274251	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	18	12274251	12274251	A	C	SNP	CIDEA	ENST00000320477	human	ensembl	74_37	+1	known	missense	c.490	p.T164P	0.014	NULL	pfam_CIDE-N_dom,smart_CIDE-N_dom,pfscan_CIDE-N_dom	-	no_errors	CIDEA	HGNC	ENSG00000176194				81	0	0	65	14	17.7215
ASXL3	0	genome.wustl.edu	37	18	31326030	31326030	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	18	31326030	31326030	C	T	SNP	ASXL3	ENST00000269197	human	ensembl	74_37	+1	known	missense	c.6218	p.T2073M	1.000	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	ASXL3	HGNC	ENSG00000141431				111	0	0	94	6	6
MYOM1	0	genome.wustl.edu	37	18	3135622	3135622	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	18	3135622	3135622	C	T	SNP	MYOM1	ENST00000356443	human	ensembl	74_37	-1	known	missense	c.2132	p.R711H	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	MYOM1	HGNC	ENSG00000101605				56	0	0	41	4	8.88889
INO80C	0	genome.wustl.edu	37	18	33077704	33077704	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	18	33077704	33077704	C	T	SNP	INO80C	ENST00000441607	human	ensembl	74_37	-1	known	silent	c.135	p.A45	0.000	NULL	pfam_YL1_C	-	no_errors	INO80C	HGNC	ENSG00000153391				20	0	0	19	4	17.3913
EPG5	0	genome.wustl.edu	37	18	43440128	43440128	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	18	43440128	43440128	G	A	SNP	EPG5	ENST00000282041	human	ensembl	74_37	-1	known	missense	c.6950	p.A2317V	1.000	NULL	NULL	-	no_errors	EPG5	HGNC	ENSG00000152223				102	0	0	96	10	9.43396
C18orf25	0	genome.wustl.edu	37	18	43795862	43795862	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	18	43795862	43795862	G	A	SNP	C18orf25	ENST00000282059	human	ensembl	74_37	+1	known	missense	c.16	p.A6T	1.000	NULL	NULL	-	no_errors	C18orf25	HGNC	ENSG00000152242				93	0	0	53	17	24.2857
ACAA2	0	genome.wustl.edu	37	18	47323922	47323922	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	18	47323922	47323922	G	A	SNP	ACAA2	ENST00000285093	human	ensembl	74_37	-1	known	missense	c.226	p.R76C	1.000	pfam_Thiolase_N,superfamily_Thiolase-like,pirsf_Thiolase,tigrfam_Thiolase	pfam_Thiolase_N,pfam_Thiolase_C,superfamily_Thiolase-like,pirsf_Thiolase,tigrfam_Thiolase	-	no_errors	ACAA2	HGNC	ENSG00000167315				87	0	0	64	16	20
EPB41L3	0	genome.wustl.edu	37	18	5397403	5397403	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	18	5397403	5397403	G	A	SNP	EPB41L3	ENST00000341928	human	ensembl	74_37	-1	known	missense	c.2495	p.S832F	0.304	pirsf_Band_41_protein	pirsf_Band_41_protein,pfam_Band_4.1_C,pfam_SAB_dom,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	EPB41L3	HGNC	ENSG00000082397				112	0	0	79	36	31.3043
CDH7	0	genome.wustl.edu	37	18	63477150	63477150	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	18	63477150	63477150	A	G	SNP	CDH7	ENST00000323011	human	ensembl	74_37	+1	known	missense	c.421	p.I141V	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH7	HGNC	ENSG00000081138				160	0	0	96	23	19.3277
LAMA1	0	genome.wustl.edu	37	18	6997771	6997771	+	Silent	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	18	6997771	6997771	T	C	SNP	LAMA1	ENST00000389658	human	ensembl	74_37	-1	known	silent	c.4776	p.S1592	0.000	pfam_Laminin_I	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_B_type_IV,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_II,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA1	HGNC	ENSG00000101680				109	0	0	67	10	12.987
CBLN2	0	genome.wustl.edu	37	18	70209217	70209217	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	18	70209217	70209217	A	G	SNP	CBLN2	ENST00000269503	human	ensembl	74_37	-1	known	missense	c.179	p.L60P	1.000	NULL	pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	CBLN2	HGNC	ENSG00000141668				42	0	0	49	8	14.0351
NETO1	0	genome.wustl.edu	37	18	70461450	70461450	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	18	70461450	70461450	C	A	SNP	NETO1	ENST00000327305	human	ensembl	74_37	-1	known	nonsense	c.541	p.G181*	1.000	superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_LDrepeatLR_classA_rpt,superfamily_CUB_dom,superfamily_LDrepeatLR_classA_rpt,smart_CUB_dom,smart_LDrepeatLR_classA_rpt,pfscan_CUB_dom,pfscan_LDrepeatLR_classA_rpt	-	no_errors	NETO1	HGNC	ENSG00000166342				89	0	0	73	24	24.7423
ZNF407	0	genome.wustl.edu	37	18	72346733	72346733	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	18	72346733	72346733	C	T	SNP	ZNF407	ENST00000299687	human	ensembl	74_37	+1	known	missense	c.3758	p.T1253M	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,smart_Znf_U1,pfscan_Znf_C2H2	-	no_errors	ZNF407	HGNC	ENSG00000215421				56	0	0	37	14	27.451
NFATC1	0	genome.wustl.edu	37	18	77170705	77170705	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	18	77170705	77170705	G	A	SNP	NFATC1	ENST00000427363	human	ensembl	74_37	+1	known	missense	c.430	p.V144I	0.038	NULL	pfam_RHD,pfam_IPT,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT,pfscan_RHD,prints_NFAT	-	no_errors	NFATC1	HGNC	ENSG00000131196				56	0	0	47	10	17.5439
TMEM259	0	genome.wustl.edu	37	19	1014301	1014301	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	19	1014301	1014301	C	T	SNP	TMEM259	ENST00000356663	human	ensembl	74_37	-1	known	missense	c.397	p.G133S	0.000	pfam_Membralin	pfam_Membralin	-	no_errors	TMEM259	HGNC	ENSG00000182087				65	0	0	62	13	17.3333
HMHA1	0	genome.wustl.edu	37	19	1080392	1080392	+	Silent	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	19	1080392	1080392	G	A	SNP	HMHA1	ENST00000536472	human	ensembl	74_37	+1	known	silent	c.1362	p.A454	0.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_FCH_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom	-	no_errors	HMHA1	HGNC	ENSG00000180448				49	0	0	60	17	22.0779
DNM2	0	genome.wustl.edu	37	19	10893787	10893787	+	Silent	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	19	10893787	10893787	G	A	SNP	DNM2	ENST00000314646	human	ensembl	74_37	+1	known	silent	c.840	p.T280	0.353	pfam_Dynamin_central,superfamily_P-loop_NTPase	pfam_Dynamin_central,pfam_Dynamin_GTPase,pfam_GED,pfam_Pleckstrin_homology,superfamily_P-loop_NTPase,smart_Dynamin_GTPase,smart_Pleckstrin_homology,smart_GED,pfscan_Pleckstrin_homology,prints_Dynamin_SF	-	no_errors	DNM2	HGNC	ENSG00000079805				57	0	0	53	13	19.697
ZNF442	0	genome.wustl.edu	37	19	12461464	12461464	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	19	12461464	12461464	T	C	SNP	ZNF442	ENST00000242804	human	ensembl	74_37	-1	known	missense	c.935	p.E312G	0.683	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF442	HGNC	ENSG00000198342				218	0	0	172	69	28.6307
TNPO2	0	genome.wustl.edu	37	19	12826220	12826220	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	19	12826220	12826220	G	A	SNP	TNPO2	ENST00000425528	human	ensembl	74_37	-1	known	missense	c.565	p.R189W	1.000	superfamily_ARM-type_fold	pfam_HEAT,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N	-	no_errors	TNPO2	HGNC	ENSG00000105576				71	0	0	75	19	20.2128
LPHN1	0	genome.wustl.edu	37	19	14272389	14272389	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	19	14272389	14272389	C	T	SNP	LPHN1	ENST00000340736	human	ensembl	74_37	-1	known	silent	c.1260	p.T420	0.028	NULL	pfam_GPCR_2_latrophilin_rcpt_C,pfam_Olfac-like,pfam_DUF3497,pfam_GPCR_2_secretin-like,pfam_Lectin_gal-bd_dom,pfam_GPS_dom,pfam_GPCR_2_extracellular_dom,smart_Olfac-like,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_Lectin_gal-bd_dom,pfscan_Olfac-like,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_latrophilin,prints_GPCR_2_secretin-like	-	no_errors	LPHN1	HGNC	ENSG00000072071				23	0	0	23	3	11.5385
SIN3B	0	genome.wustl.edu	37	19	16977341	16977341	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	19	16977341	16977341	A	G	SNP	SIN3B	ENST00000379803	human	ensembl	74_37	+1	known	missense	c.1876	p.N626D	1.000	NULL	pfam_PAH,pfam_HDAC_interact,superfamily_PAH,smart_HDAC_interact	-	no_errors	SIN3B	HGNC	ENSG00000127511				80	0	0	52	18	25.7143
GTPBP3	0	genome.wustl.edu	37	19	17450368	17450368	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	19	17450368	17450368	G	A	SNP	GTPBP3	ENST00000358792	human	ensembl	74_37	+1	known	missense	c.1030	p.G344R	0.997	pfam_GTP_binding_domain,superfamily_P-loop_NTPase,tigrfam_Small_GTP-bd_dom	pfam_GTP-bd_TrmE_N,pfam_GTP_binding_domain,superfamily_P-loop_NTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	GTPBP3	HGNC	ENSG00000130299				28	0	0	33	6	15.3846
ADAT3	0	genome.wustl.edu	37	19	1912976	1912976	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	19	1912976	1912976	C	T	SNP	ADAT3	ENST00000329478	human	ensembl	74_37	+1	known	silent	c.930	p.C310	0.994	pfam_CMP_dCMP_Zn-bd,superfamily_Cytidine_deaminase-like	pfam_CMP_dCMP_Zn-bd,superfamily_Cytidine_deaminase-like	-	no_errors	ADAT3	HGNC	ENSG00000213638				77	0	0	84	26	23.6364
NCAN	0	genome.wustl.edu	37	19	19338930	19338930	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	19	19338930	19338930	C	T	SNP	NCAN	ENST00000252575	human	ensembl	74_37	+1	known	missense	c.2501	p.T834M	0.000	NULL	pfam_Link,pfam_C-type_lectin,pfam_Sushi_SCR_CCP,pfam_Ig_V-set,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_Ig_sub,smart_Link,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like_dom,prints_Link,prints_AntifreezeII	-	no_errors	NCAN	HGNC	ENSG00000130287				65	0	0	64	14	17.9487
NCAN	0	genome.wustl.edu	37	19	19339050	19339050	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	19	19339050	19339050	C	T	SNP	NCAN	ENST00000252575	human	ensembl	74_37	+1	known	missense	c.2621	p.T874M	0.000	NULL	pfam_Link,pfam_C-type_lectin,pfam_Sushi_SCR_CCP,pfam_Ig_V-set,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_Ig_sub,smart_Link,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like_dom,prints_Link,prints_AntifreezeII	-	no_errors	NCAN	HGNC	ENSG00000130287				103	0	0	106	18	14.5161
HAPLN4	0	genome.wustl.edu	37	19	19371869	19371869	+	Silent	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	19	19371869	19371869	G	A	SNP	HAPLN4	ENST00000291481	human	ensembl	74_37	-1	known	silent	c.237	p.H79	0.983	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Link,pfam_Ig_V-set,superfamily_C-type_lectin_fold,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Link,pfscan_Link,pfscan_Ig-like_dom,prints_Link	-	no_errors	HAPLN4	HGNC	ENSG00000187664				48	0	0	36	12	25
CILP2	0	genome.wustl.edu	37	19	19656297	19656297	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	19	19656297	19656297	C	T	SNP	CILP2	ENST00000291495	human	ensembl	74_37	+1	known	silent	c.2943	p.P981	0.004	NULL	pfam_Thrombospondin_1_rpt,pfam_Ig_I-set,superfamily_Thrombospondin_1_rpt,superfamily_CarboxyPept-like_regulatory,superfamily_Carb-bd-like_fold,smart_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom	-	no_errors	CILP2	HGNC	ENSG00000160161				28	0	0	32	7	17.9487
ATP13A1	0	genome.wustl.edu	37	19	19766902	19766902	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	19	19766902	19766902	G	A	SNP	ATP13A1	ENST00000357324	human	ensembl	74_37	-1	known	nonsense	c.1174	p.Q392*	1.000	pfam_ATPase_P-typ_transduc_dom_A,tigrfam_ATPase_P-typ_Cation_typ_V	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Cation_typ_V,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP13A1	HGNC	ENSG00000105726				60	0	0	54	15	21.7391
ZNF493	0	genome.wustl.edu	37	19	21605806	21605806	+	Silent	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	19	21605806	21605806	T	C	SNP	ZNF493	ENST00000392288	human	ensembl	74_37	+1	novel	silent	c.345	p.C115	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF493	HGNC	ENSG00000196268				179	0	0	112	7	5.88235
TMPRSS9	0	genome.wustl.edu	37	19	2408410	2408410	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	19	2408410	2408410	C	T	SNP	TMPRSS9	ENST00000332578	human	ensembl	74_37	+1	known	missense	c.797	p.S266L	0.028	pirsf_Pept_S1A_polyserase-1,pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pirsf_Pept_S1A_polyserase-1,pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,pfam_LDrepeatLR_classA_rpt,superfamily_Trypsin-like_Pept_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_LDrepeatLR_classA_rpt,pfscan_Peptidase_S1	-	no_errors	TMPRSS9	HGNC	ENSG00000178297				80	0	0	70	26	27.0833
LMNB2	0	genome.wustl.edu	37	19	2433834	2433834	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	19	2433834	2433834	T	C	SNP	LMNB2	ENST00000325327	human	ensembl	74_37	-1	known	missense	c.1472	p.N491S	0.377	pfam_Lamin_tail_dom	pfam_IF,pfam_Lamin_tail_dom,superfamily_Prefoldin	-	no_errors	LMNB2	HGNC	ENSG00000176619				86	0	0	114	7	5.78512
TSHZ3	0	genome.wustl.edu	37	19	31769867	31769867	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	19	31769867	31769867	T	C	SNP	TSHZ3	ENST00000240587	human	ensembl	74_37	-1	known	missense	c.832	p.M278V	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	TSHZ3	HGNC	ENSG00000121297				171	0	0	167	41	19.7115
ZNF181	0	genome.wustl.edu	37	19	35232234	35232234	+	Silent	SNP	T	T	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	19	35232234	35232234	T	G	SNP	ZNF181	ENST00000392232	human	ensembl	74_37	+1	known	silent	c.1080	p.T360	0.997	smart_Znf_BED_prd,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,smart_Znf_BED_prd,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF181	HGNC	ENSG00000197841				81	0	0	78	10	11.3636
ZNF30	0	genome.wustl.edu	37	19	35434229	35434229	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	19	35434229	35434229	G	A	SNP	ZNF30	ENST00000303586	human	ensembl	74_37	+1	known	missense	c.362	p.R121H	0.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF30	HGNC	ENSG00000168661				85	0	0	60	5	7.69231
GRAMD1A	0	genome.wustl.edu	37	19	35500086	35500086	+	Silent	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	19	35500086	35500086	G	A	SNP	GRAMD1A	ENST00000317991	human	ensembl	74_37	+1	known	silent	c.72	p.Q24	1.000	NULL	pfam_GRAM,smart_GRAM	-	no_errors	GRAMD1A	HGNC	ENSG00000089351				87	0	0	117	7	5.64516
SBSN	0	genome.wustl.edu	37	19	36018665	36018665	+	Silent	SNP	T	T	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	19	36018665	36018665	T	G	SNP	SBSN	ENST00000452271	human	ensembl	74_37	-1	novel	silent	c.519	p.G173	0.055	NULL	NULL	-	no_errors	SBSN	HGNC	ENSG00000189001				22	0	0	38	7	15.5556
ATP4A	0	genome.wustl.edu	37	19	36046105	36046105	+	Silent	SNP	A	A	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	19	36046105	36046105	A	G	SNP	ATP4A	ENST00000262623	human	ensembl	74_37	-1	known	silent	c.2289	p.D763	0.966	superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATPase_P-typ_H/K-transp_N,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP4A	HGNC	ENSG00000105675				62	0	0	48	15	23.8095
ATP4A	0	genome.wustl.edu	37	19	36050029	36050029	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	19	36050029	36050029	G	A	SNP	ATP4A	ENST00000262623	human	ensembl	74_37	-1	known	missense	c.1121	p.A374V	1.000	pfam_ATPase_P-typ_transduc_dom_A,superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATPase_P-typ_H/K-transp_N,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP4A	HGNC	ENSG00000105675				255	0	0	187	48	20.4255
ZBTB32	0	genome.wustl.edu	37	19	36207582	36207582	+	Silent	SNP	C	C	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	19	36207582	36207582	C	A	SNP	ZBTB32	ENST00000262630	human	ensembl	74_37	+1	known	silent	c.1392	p.T464	0.994	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB32	HGNC	ENSG00000011590				79	0	0	95	37	28.0303
PIP5K1C	0	genome.wustl.edu	37	19	3646034	3646034	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	19	3646034	3646034	G	T	SNP	PIP5K1C	ENST00000537021	human	ensembl	74_37	-1	known	missense	c.1283	p.P428H	1.000	pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub	pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub	-	no_errors	PIP5K1C	HGNC	ENSG00000186111				99	0	0	88	13	12.8713
CLIP3	0	genome.wustl.edu	37	19	36510151	36510151	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	19	36510151	36510151	C	T	SNP	CLIP3	ENST00000360535	human	ensembl	74_37	-1	known	missense	c.976	p.V326M	1.000	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,pfscan_CAP-Gly_domain	pfam_CAP-Gly_domain,pfam_Ankyrin_rpt,superfamily_CAP-Gly_domain,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_CAP-Gly_domain	-	no_errors	CLIP3	HGNC	ENSG00000105270				49	0	0	39	12	23.5294
ZNF571	0	genome.wustl.edu	37	19	38057129	38057129	+	Silent	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	19	38057129	38057129	T	C	SNP	ZNF571	ENST00000328550	human	ensembl	74_37	-1	known	silent	c.201	p.S67	0.001	pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF571	HGNC	ENSG00000180479				113	0	0	79	13	14.1304
PAF1	0	genome.wustl.edu	37	19	39880926	39880926	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	19	39880926	39880926	G	T	SNP	PAF1	ENST00000416728	human	ensembl	74_37	-1	known	missense	c.14	p.P5Q	1.000	NULL	pfam_RNA_pol_II-assoc_Paf1	-	no_errors	PAF1	HGNC	ENSG00000006712				16	0	0	15	12	44.4444
MED29	0	genome.wustl.edu	37	19	39888358	39888358	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	19	39888358	39888358	G	T	SNP	MED29	ENST00000594368	human	ensembl	74_37	+1	putative	missense	c.552	p.W184C	0.000	NULL	pfam_Mediator_Med29_met	-	no_errors	MED29	HGNC	ENSG00000063322				26	0	0	18	8	30.7692
FBL	0	genome.wustl.edu	37	19	40328363	40328363	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	19	40328363	40328363	G	T	SNP	FBL	ENST00000221801	human	ensembl	74_37	-1	known	missense	c.670	p.R224S	1.000	pfam_Fibrillarin,pirsf_Fibrillarin,prints_Fibrillarin	pfam_Fibrillarin,pirsf_Fibrillarin,prints_Fibrillarin	-	no_errors	FBL	HGNC	ENSG00000105202				126	0	0	119	16	11.8519
ATP1A3	0	genome.wustl.edu	37	19	42489310	42489310	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	19	42489310	42489310	C	T	SNP	ATP1A3	ENST00000302102	human	ensembl	74_37	-1	known	silent	c.753	p.T251	0.052	pfam_ATPase_P-typ_transduc_dom_A,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP1A3	HGNC	ENSG00000105409				29	0	0	35	4	10.2564
GRIK5	0	genome.wustl.edu	37	19	42560855	42560855	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	19	42560855	42560855	A	G	SNP	GRIK5	ENST00000301218	human	ensembl	74_37	-1	known	missense	c.862	p.W288R	1.000	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK5	HGNC	ENSG00000105737				91	0	0	70	20	22.2222
FSD1	0	genome.wustl.edu	37	19	4323414	4323414	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	19	4323414	4323414	C	T	SNP	FSD1	ENST00000221856	human	ensembl	74_37	+1	known	missense	c.1361	p.P454L	0.998	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Bbox_C,smart_Fibronectin_type3,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	-	no_errors	FSD1	HGNC	ENSG00000105255				25	0	0	31	12	27.907
ZNF224	0	genome.wustl.edu	37	19	44610781	44610781	+	Silent	SNP	C	C	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	19	44610781	44610781	C	A	SNP	ZNF224	ENST00000336976	human	ensembl	74_37	+1	known	silent	c.468	p.S156	0.004	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF224	HGNC	ENSG00000267680				124	0	0	95	27	22.1311
OPA3	0	genome.wustl.edu	37	19	46032599	46032599	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	19	46032599	46032599	C	A	SNP	OPA3	ENST00000323060	human	ensembl	74_37	-1	known	missense	c.258	p.E86D	0.942	pfam_OPA3-like	pfam_OPA3-like	-	no_errors	OPA3	HGNC	ENSG00000125741				130	1	0.763359	122	36	22.7848
SNRPD2	0	genome.wustl.edu	37	19	46190822	46190822	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	19	46190822	46190822	C	T	SNP	SNRPD2	ENST00000342669	human	ensembl	74_37	-1	known	missense	c.346	p.A116T	1.000	superfamily_LSM_dom	pfam_Ribonucl_LSM,superfamily_LSM_dom,smart_Ribonucl_LSM_euk/arc	-	no_errors	SNRPD2	HGNC	ENSG00000125743				63	0	0	69	6	8
FBXO46	0	genome.wustl.edu	37	19	46216383	46216383	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	19	46216383	46216383	C	A	SNP	FBXO46	ENST00000317683	human	ensembl	74_37	-1	known	missense	c.371	p.W124L	1.000	NULL	superfamily_F-box_dom,smart_F-box_dom,pfscan_F-box_dom	-	no_errors	FBXO46	HGNC	ENSG00000177051				72	0	0	83	6	6.74157
PPP5C	0	genome.wustl.edu	37	19	46891936	46891936	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	19	46891936	46891936	G	A	SNP	PPP5C	ENST00000012443	human	ensembl	74_37	+1	known	missense	c.1303	p.E435K	1.000	smart_Ser/Thr-sp_prot-phosphatase,pirsf_Ser/Thr_PPase_5,prints_Ser/Thr-sp_prot-phosphatase	pfam_PEstase_dom,pfam_PPP_dom,pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,smart_Ser/Thr-sp_prot-phosphatase,pirsf_Ser/Thr_PPase_5,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Ser/Thr-sp_prot-phosphatase	-	no_errors	PPP5C	HGNC	ENSG00000011485				134	1	0.740741	127	16	11.1888
UHRF1	0	genome.wustl.edu	37	19	4929423	4929423	+	RNA	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	19	4929423	4929423	G	A	SNP	UHRF1	ENST00000262952	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	UHRF1	HGNC	ENSG00000034063				30	0	0	35	14	28.5714
PTOV1	0	genome.wustl.edu	37	19	50360274	50360274	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	19	50360274	50360274	C	T	SNP	PTOV1	ENST00000391842	human	ensembl	74_37	+1	known	missense	c.601	p.R201C	1.000	pfam_Mediator_Med25	pfam_Mediator_Med25	-	no_errors	PTOV1	HGNC	ENSG00000104960				162	0	0	166	47	22.0657
PTOV1	0	genome.wustl.edu	37	19	50363330	50363330	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	19	50363330	50363330	G	T	SNP	PTOV1	ENST00000391842	human	ensembl	74_37	+1	known	missense	c.1129	p.G377C	1.000	pfam_Mediator_Med25	pfam_Mediator_Med25	-	no_errors	PTOV1	HGNC	ENSG00000104960				59	0	0	56	4	6.66667
TBC1D17	0	genome.wustl.edu	37	19	50384662	50384662	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	19	50384662	50384662	G	A	SNP	TBC1D17	ENST00000221543	human	ensembl	74_37	+1	known	missense	c.457	p.A153T	0.968	pfam_DUF3548	pfam_DUF3548,pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D17	HGNC	ENSG00000104946				52	0	0	71	4	5.33333
ZNF473	0	genome.wustl.edu	37	19	50549654	50549654	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	19	50549654	50549654	G	A	SNP	ZNF473	ENST00000270617	human	ensembl	74_37	+1	known	missense	c.1954	p.G652R	0.980	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF473	HGNC	ENSG00000142528				63	0	0	52	19	26.7606
LRRC4B	0	genome.wustl.edu	37	19	51021694	51021694	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	19	51021694	51021694	C	T	SNP	LRRC4B	ENST00000389201	human	ensembl	74_37	-1	known	missense	c.1276	p.V426I	1.000	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LRRC4B	HGNC	ENSG00000131409				68	0	0	68	16	19.0476
KLK9	0	genome.wustl.edu	37	19	51506431	51506431	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	19	51506431	51506431	C	T	SNP	KLK9	ENST00000250366	human	ensembl	74_37	-1	known	missense	c.689	p.R230H	0.712	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	KLK9	Uniprot_gn	ENSG00000269741				122	0	0	134	14	9.45946
SIGLECL1	0	genome.wustl.edu	37	19	51769106	51769106	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	19	51769106	51769106	C	T	SNP	SIGLECL1	ENST00000316401	human	ensembl	74_37	+1	known	missense	c.380	p.A127V	0.000	NULL	NULL	-	no_errors	SIGLECL1	HGNC	ENSG00000179213				234	0	0	262	30	10.274
NKG7	0	genome.wustl.edu	37	19	51875430	51875430	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	19	51875430	51875430	C	T	SNP	NKG7	ENST00000221978	human	ensembl	74_37	-1	known	missense	c.289	p.A97T	0.000	pfam_PMP22/EMP/MP20/Claudin	pfam_PMP22/EMP/MP20/Claudin	-	no_errors	NKG7	HGNC	ENSG00000105374				114	0	0	149	19	11.3095
ZNF841	0	genome.wustl.edu	37	19	52570189	52570189	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	19	52570189	52570189	G	A	SNP	ZNF841	ENST00000389534	human	ensembl	74_37	-1	known	missense	c.946	p.P316S	0.785	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF841	HGNC	ENSG00000197608				46	0	0	37	6	13.9535
PPP2R1A	0	genome.wustl.edu	37	19	52719794	52719794	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	19	52719794	52719794	G	A	SNP	PPP2R1A	ENST00000322088	human	ensembl	74_37	+1	known	missense	c.1006	p.D336N	1.000	superfamily_ARM-type_fold,pfscan_HEAT_type_2	pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	PPP2R1A	HGNC	ENSG00000105568				46	0	0	44	18	29.0323
ZNF347	0	genome.wustl.edu	37	19	53644779	53644779	+	Silent	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	19	53644779	53644779	G	A	SNP	ZNF347	ENST00000452676	human	ensembl	74_37	-1	known	silent	c.1305	p.C435	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF347	HGNC	ENSG00000197937				179	0	0	153	18	10.5263
LENG1	0	genome.wustl.edu	37	19	54660650	54660650	+	Silent	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	19	54660650	54660650	G	A	SNP	LENG1	ENST00000222224	human	ensembl	74_37	-1	known	silent	c.426	p.P142	0.000	NULL	NULL	-	no_errors	LENG1	HGNC	ENSG00000105617				95	0	0	125	15	10.7143
RPS9	0	genome.wustl.edu	37	19	54710190	54710190	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	19	54710190	54710190	G	T	SNP	RPS9	ENST00000302907	human	ensembl	74_37	+1	known	missense	c.267	p.E89D	1.000	pfam_Ribosomal_S4/S9_N,tigrfam_Ribosomal_S4/S9_euk/arc	pfam_Ribosomal_S4/S9_N,pfam_S4_RNA-bd,smart_S4_RNA-bd,pfscan_S4_RNA-bd,tigrfam_Ribosomal_S4/S9_euk/arc	-	no_errors	RPS9	HGNC	ENSG00000170889				54	0	0	52	16	23.5294
SUV420H2	0	genome.wustl.edu	37	19	55855161	55855161	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	19	55855161	55855161	G	A	SNP	SUV420H2	ENST00000255613	human	ensembl	74_37	+1	known	missense	c.500	p.R167H	1.000	pfam_SET_dom,smart_SET_dom	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	-	no_errors	SUV420H2	HGNC	ENSG00000133247				16	0	0	26	9	25.7143
SAFB2	0	genome.wustl.edu	37	19	5590402	5590402	+	Silent	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	19	5590402	5590402	G	A	SNP	SAFB2	ENST00000252542	human	ensembl	74_37	-1	known	silent	c.2412	p.R804	0.438	NULL	pfam_RRM_dom,pfam_SAP_dom,smart_SAP_dom,smart_RRM_dom,pfscan_SAP_dom,pfscan_RRM_dom	-	no_errors	SAFB2	HGNC	ENSG00000130254				40	0	0	41	6	12.766
ZNF628	0	genome.wustl.edu	37	19	55994109	55994109	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	19	55994109	55994109	C	A	SNP	ZNF628	ENST00000598519	human	ensembl	74_37	+1	known	missense	c.1549	p.L517I	0.992	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF628	HGNC	ENSG00000197483				60	0	0	70	22	23.913
CCDC106	0	genome.wustl.edu	37	19	56163822	56163822	+	Silent	SNP	C	C	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	19	56163822	56163822	C	A	SNP	CCDC106	ENST00000308964	human	ensembl	74_37	+1	known	silent	c.553	p.R185	1.000	NULL	NULL	-	no_errors	CCDC106	HGNC	ENSG00000173581				33	0	0	46	8	14.8148
NLRP5	0	genome.wustl.edu	37	19	56549538	56549538	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	19	56549538	56549538	C	T	SNP	NLRP5	ENST00000390649	human	ensembl	74_37	+1	known	silent	c.2763	p.S921	0.000	NULL	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP5	HGNC	ENSG00000171487				129	0	0	87	43	33.0769
ZNF787	0	genome.wustl.edu	37	19	56600242	56600242	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	19	56600242	56600242	C	T	SNP	ZNF787	ENST00000270459	human	ensembl	74_37	-1	known	missense	c.299	p.G100D	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF787	HGNC	ENSG00000142409				23	0	0	34	3	8.10811
ZSCAN5A	0	genome.wustl.edu	37	19	56733037	56733037	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	19	56733037	56733037	T	G	SNP	ZSCAN5A	ENST00000391713	human	ensembl	74_37	-1	known	missense	c.1398	p.K466N	0.227	pfscan_Znf_C2H2	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN5A	HGNC	ENSG00000131848				71	0	0	63	15	19.2308
ZNF667	0	genome.wustl.edu	37	19	56953014	56953014	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	19	56953014	56953014	T	G	SNP	ZNF667	ENST00000342634	human	ensembl	74_37	-1	known	missense	c.1734	p.K578N	0.296	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF667	HGNC	ENSG00000198046				66	0	0	55	3	5.17241
ZNF667	0	genome.wustl.edu	37	19	56953681	56953681	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	19	56953681	56953681	A	C	SNP	ZNF667	ENST00000342634	human	ensembl	74_37	-1	known	missense	c.1067	p.L356R	0.015	smart_Znf_C2H2-like	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF667	HGNC	ENSG00000198046				171	0	0	121	24	16.5517
ZNF324	0	genome.wustl.edu	37	19	58983336	58983336	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	19	58983336	58983336	C	T	SNP	ZNF324	ENST00000196482	human	ensembl	74_37	+1	known	missense	c.1477	p.R493C	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF324	HGNC	ENSG00000083812				54	0	0	43	5	10.4167
FBN3	0	genome.wustl.edu	37	19	8137014	8137014	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	19	8137014	8137014	G	A	SNP	FBN3	ENST00000270509	human	ensembl	74_37	-1	known	missense	c.8006	p.S2669L	0.998	pirsf_FBN	pfam_EGF-like_Ca-bd_dom,pfam_TB_dom,pfam_EG-like_dom,superfamily_TB_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pirsf_FBN,pfscan_EG-like_dom	-	no_errors	FBN3	HGNC	ENSG00000142449				218	0	0	229	44	16.1172
RAB11B	0	genome.wustl.edu	37	19	8464825	8464825	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	19	8464825	8464825	G	T	SNP	RAB11B	ENST00000328024	human	ensembl	74_37	+1	known	missense	c.119	p.S40I	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB11B	HGNC	ENSG00000185236				63	0	0	49	6	10.9091
HNRNPM	0	genome.wustl.edu	37	19	8548060	8548060	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	19	8548060	8548060	T	C	SNP	HNRNPM	ENST00000325495	human	ensembl	74_37	+1	known	missense	c.1139	p.L380P	1.000	NULL	pfam_RRM_dom,pfam_HnRNP_M_PY-NLS,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HNRNPM	HGNC	ENSG00000099783				47	0	0	42	7	14.2857
OR7E24	0	genome.wustl.edu	37	19	9362135	9362135	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	19	9362135	9362135	A	T	SNP	OR7E24	ENST00000456448	human	ensembl	74_37	+1	known	missense	c.416	p.D139V	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR7E24	HGNC	ENSG00000237521				82	0	0	65	20	23.5294
LONRF2	0	genome.wustl.edu	37	2	100916256	100916256	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	100916256	100916256	G	A	SNP	LONRF2	ENST00000393437	human	ensembl	74_37	-1	known	missense	c.1190	p.A397V	0.006	NULL	pfam_Pept_S16_N,pfam_Znf_C3HC4_RING-type,superfamily_PUA-like_domain,smart_Znf_RING,smart_TPR_repeat,smart_Pept_S16_N,pfscan_TPR-contain_dom,pfscan_Znf_RING	-	no_errors	LONRF2	HGNC	ENSG00000170500				132	0	0	109	13	10.6557
KLF11	0	genome.wustl.edu	37	2	10192518	10192518	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	10192518	10192518	C	T	SNP	KLF11	ENST00000305883	human	ensembl	74_37	+1	known	missense	c.1423	p.R475C	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	KLF11	HGNC	ENSG00000172059				56	0	0	65	24	26.9663
RANBP2	0	genome.wustl.edu	37	2	109369912	109369912	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	109369912	109369912	G	A	SNP	RANBP2	ENST00000283195	human	ensembl	74_37	+1	known	missense	c.1948	p.A650T	1.000	NULL	pfam_Ran_bind_dom,pfam_Znf_RanBP2,pfam_IR1-M,pfam_Cyclophilin-like_PPIase_dom,pfam_TPR_1,superfamily_Cyclophilin-like_PPIase_dom,smart_TPR_repeat,smart_Ran_bind_dom,smart_Znf_RanBP2,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Znf_RanBP2,pfscan_Cyclophilin-like_PPIase_dom,pfscan_Ran_bind_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	RANBP2	HGNC	ENSG00000153201				150	0	0	112	12	9.67742
KCNF1	0	genome.wustl.edu	37	2	11053586	11053586	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	11053586	11053586	T	C	SNP	KCNF1	ENST00000295082	human	ensembl	74_37	+1	known	missense	c.1034	p.M345T	1.000	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,pfam_PKD1_2_channel,prints_K_chnl	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,pfam_PKD1_2_channel,superfamily_BTB/POZ_fold,prints_K_chnl,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv6	-	no_errors	KCNF1	HGNC	ENSG00000162975				64	0	0	62	14	18.4211
FBLN7	0	genome.wustl.edu	37	2	112940466	112940466	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	112940466	112940466	G	A	SNP	FBLN7	ENST00000331203	human	ensembl	74_37	+1	known	missense	c.769	p.G257S	0.595	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom	pfam_EGF-like_Ca-bd_dom,pfam_Sushi_SCR_CCP,pfam_EG-like_dom,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Sushi_SCR_CCP	-	no_errors	FBLN7	HGNC	ENSG00000144152				74	0	0	76	34	30.9091
ROCK2	0	genome.wustl.edu	37	2	11348480	11348480	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	11348480	11348480	C	T	SNP	ROCK2	ENST00000315872	human	ensembl	74_37	-1	known	missense	c.2297	p.C766Y	1.000	pirsf_Rho-assoc_coiled-coil_kin	pfam_Prot_kinase_dom,pfam_Rho-bd_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pleckstrin_homology,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_tRNA-bd_arm,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,pirsf_Rho-assoc_coiled-coil_kin,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom	-	no_errors	ROCK2	HGNC	ENSG00000134318				57	0	0	23	5	17.8571
GREB1	0	genome.wustl.edu	37	2	11702638	11702638	+	Silent	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	11702638	11702638	G	A	SNP	GREB1	ENST00000234142	human	ensembl	74_37	+1	known	silent	c.207	p.G69	0.134	NULL	superfamily_P-loop_NTPase	-	no_errors	GREB1	HGNC	ENSG00000196208				121	0	0	106	42	28.3784
GREB1	0	genome.wustl.edu	37	2	11750942	11750942	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	11750942	11750942	C	T	SNP	GREB1	ENST00000234142	human	ensembl	74_37	+1	known	missense	c.2795	p.T932M	0.993	NULL	superfamily_P-loop_NTPase	-	no_errors	GREB1	HGNC	ENSG00000196208				60	0	0	94	6	6
CCDC93	0	genome.wustl.edu	37	2	118766148	118766148	+	Silent	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	118766148	118766148	T	C	SNP	CCDC93	ENST00000376300	human	ensembl	74_37	-1	known	silent	c.129	p.R43	1.000	pfam_DUF2037	pfam_DUF2037	-	no_errors	CCDC93	HGNC	ENSG00000125633				152	0	0	123	7	5.38462
SNTG2	0	genome.wustl.edu	37	2	1241712	1241712	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	1241712	1241712	C	T	SNP	SNTG2	ENST00000308624	human	ensembl	74_37	+1	known	missense	c.772	p.R258W	0.929	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SNTG2	HGNC	ENSG00000172554				11	0	0	19	9	32.1429
MYO7B	0	genome.wustl.edu	37	2	128388920	128388920	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	128388920	128388920	G	A	SNP	MYO7B	ENST00000389524	human	ensembl	74_37	+1	known	missense	c.4999	p.A1667T	0.999	smart_MyTH4_dom,pfscan_MyTH4_dom	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,pfam_SH3_2,superfamily_P-loop_NTPase,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_Band_41_domain,smart_SH3_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_SH3_domain,prints_Myosin_head_motor_dom	-	no_errors	MYO7B	HGNC	ENSG00000169994				47	0	0	54	4	6.89655
NCKAP5	0	genome.wustl.edu	37	2	133540357	133540357	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	133540357	133540357	C	A	SNP	NCKAP5	ENST00000317721	human	ensembl	74_37	-1	known	missense	c.4027	p.G1343W	0.002	NULL	NULL	-	no_errors	NCKAP5	HGNC	ENSG00000176771				43	0	0	33	9	21.4286
MAP3K19	0	genome.wustl.edu	37	2	135744541	135744541	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	135744541	135744541	G	A	SNP	MAP3K19	ENST00000375845	human	ensembl	74_37	-1	known	missense	c.1901	p.P634L	0.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP3K19	HGNC	ENSG00000176601				233	0	0	214	48	18.3206
ZRANB3	0	genome.wustl.edu	37	2	136029371	136029371	+	Silent	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	136029371	136029371	G	A	SNP	ZRANB3	ENST00000264159	human	ensembl	74_37	-1	known	silent	c.1173	p.R391	0.497	pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_C,pfscan_Helicase_C	pfam_SNF2_N,pfam_Helicase_C,pfam_HNH,pfam_Znf_RanBP2,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Znf_RanBP2,smart_HNH_nuc,pfscan_Znf_RanBP2,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ZRANB3	HGNC	ENSG00000121988				62	0	0	52	14	21.2121
LRP1B	0	genome.wustl.edu	37	2	141202148	141202148	+	Silent	SNP	A	A	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	141202148	141202148	A	G	SNP	LRP1B	ENST00000389484	human	ensembl	74_37	-1	known	silent	c.10158	p.S3386	0.909	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702				87	0	0	47	30	38.961
LRP1B	0	genome.wustl.edu	37	2	141625740	141625740	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	141625740	141625740	A	G	SNP	LRP1B	ENST00000389484	human	ensembl	74_37	-1	known	missense	c.4262	p.M1421T	1.000	pfam_LDLR_classB_rpt,smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702				159	0	0	87	25	22.3214
ZEB2	0	genome.wustl.edu	37	2	145153986	145153986	+	Silent	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	145153986	145153986	T	C	SNP	ZEB2	ENST00000303660	human	ensembl	74_37	-1	known	silent	c.3060	p.E1020	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZEB2	HGNC	ENSG00000169554				236	0	0	137	62	31.1558
NBAS	0	genome.wustl.edu	37	2	15415645	15415645	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	15415645	15415645	A	G	SNP	NBAS	ENST00000281513	human	ensembl	74_37	-1	known	missense	c.5687	p.V1896A	0.993	NULL	pfam_Sec39,superfamily_Quino_amine_DH_bsu	-	no_errors	NBAS	HGNC	ENSG00000151779				71	0	0	55	4	6.77966
NBAS	0	genome.wustl.edu	37	2	15557796	15557796	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	15557796	15557796	C	T	SNP	NBAS	ENST00000281513	human	ensembl	74_37	-1	known	missense	c.2618	p.R873Q	1.000	pfam_Sec39	pfam_Sec39,superfamily_Quino_amine_DH_bsu	-	no_errors	NBAS	HGNC	ENSG00000151779				38	0	0	36	5	12.1951
NR4A2	0	genome.wustl.edu	37	2	157184520	157184520	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	157184520	157184520	C	T	SNP	NR4A2	ENST00000539077	human	ensembl	74_37	-1	known	missense	c.1034	p.R345H	1.000	superfamily_Nucl_hormone_rcpt_ligand-bd,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Retinoic_acid_rcpt	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_NURR_rcpt,prints_Nuc_orph_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Retinoic_acid_rcpt	-	no_errors	NR4A2	HGNC	ENSG00000153234				14	0	0	11	5	31.25
BAZ2B	0	genome.wustl.edu	37	2	160289669	160289669	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	160289669	160289669	C	A	SNP	BAZ2B	ENST00000392783	human	ensembl	74_37	-1	known	missense	c.1499	p.S500I	1.000	NULL	pfam_Bromodomain,pfam_Methyl_CpG_DNA-bd,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_DNA-bd_dom,superfamily_Znf_FYVE_PHD,superfamily_ARM-type_fold,smart_Methyl_CpG_DNA-bd,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Methyl_CpG_DNA-bd,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ2B	HGNC	ENSG00000123636				262	0	0	204	19	8.52018
PXDN	0	genome.wustl.edu	37	2	1642695	1642695	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	1642695	1642695	A	C	SNP	PXDN	ENST00000252804	human	ensembl	74_37	-1	known	missense	c.4129	p.S1377A	0.000	NULL	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like_dom	-	no_errors	PXDN	HGNC	ENSG00000130508				74	0	0	74	21	22.1053
FIGN	0	genome.wustl.edu	37	2	164467050	164467050	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	164467050	164467050	C	A	SNP	FIGN	ENST00000333129	human	ensembl	74_37	-1	known	missense	c.1292	p.G431V	1.000	NULL	pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	FIGN	HGNC	ENSG00000182263				128	0	0	105	41	28.0822
PXDN	0	genome.wustl.edu	37	2	1647230	1647230	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	1647230	1647230	C	T	SNP	PXDN	ENST00000252804	human	ensembl	74_37	-1	known	missense	c.3862	p.V1288M	1.000	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like_dom	-	no_errors	PXDN	HGNC	ENSG00000130508				103	0	0	157	20	11.2994
PXDN	0	genome.wustl.edu	37	2	1652618	1652618	+	Silent	SNP	G	G	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	1652618	1652618	G	T	SNP	PXDN	ENST00000252804	human	ensembl	74_37	-1	known	silent	c.2934	p.A978	1.000	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,prints_Haem_peroxidase_animal_subgr,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like_dom	-	no_errors	PXDN	HGNC	ENSG00000130508				16	0	0	15	5	25
B3GALT1	0	genome.wustl.edu	37	2	168726164	168726164	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	168726164	168726164	C	T	SNP	B3GALT1	ENST00000305861	human	ensembl	74_37	+1	known	silent	c.615	p.G205	0.999	pfam_Glyco_trans_31	pfam_Glyco_trans_31	-	no_errors	B3GALT1	HGNC	ENSG00000172318				76	0	0	51	33	39.2857
LRP2	0	genome.wustl.edu	37	2	170104000	170104000	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	170104000	170104000	T	A	SNP	LRP2	ENST00000263816	human	ensembl	74_37	-1	known	missense	c.2796	p.R932S	0.992	smart_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479				78	0	0	64	32	33.3333
RAD51AP2	0	genome.wustl.edu	37	2	17699599	17699599	+	Silent	SNP	G	G	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	17699599	17699599	G	T	SNP	RAD51AP2	ENST00000399080	human	ensembl	74_37	-1	known	silent	c.84	p.S28	0.000	NULL	NULL	-	no_errors	RAD51AP2	HGNC	ENSG00000214842				147	0	0	131	33	20.122
OSBPL6	0	genome.wustl.edu	37	2	179247919	179247919	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	179247919	179247919	A	G	SNP	OSBPL6	ENST00000315022	human	ensembl	74_37	+1	known	missense	c.1802	p.N601S	1.000	pfam_Oxysterol-bd	pfam_Oxysterol-bd,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL6	HGNC	ENSG00000079156				71	0	0	72	7	8.86076
TTN	0	genome.wustl.edu	37	2	179410360	179410360	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	179410360	179410360	A	G	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.87773	p.I29258T	1.000	pfam_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				315	0	0	278	72	20.5714
TTN	0	genome.wustl.edu	37	2	179413378	179413378	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	179413378	179413378	C	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.85271	p.G28424V	1.000	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				201	0	0	154	39	20.2073
TTN	0	genome.wustl.edu	37	2	179427507	179427507	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	179427507	179427507	C	T	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	silent	c.75648	p.T25216	0.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				44	0	0	48	5	9.43396
TTN	0	genome.wustl.edu	37	2	179544699	179544699	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	179544699	179544699	C	T	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.29770	p.E9924K	0.996	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				97	0	0	74	18	19.5652
CWC22	0	genome.wustl.edu	37	2	180830644	180830644	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	180830644	180830644	C	T	SNP	CWC22	ENST00000295749	human	ensembl	74_37	-1	known	missense	c.1276	p.E426K	0.993	NULL	pfam_MIF4G-like_typ-3,pfam_Initiation_fac_eIF4g_MI,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3,smart_Initiation_fac_eIF4g_MI	-	no_errors	CWC22	HGNC	ENSG00000163510				95	0	0	54	7	11.4754
PPP1R1C	0	genome.wustl.edu	37	2	182928520	182928520	+	Splice_Site	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	182928520	182928520	T	C	SNP	PPP1R1C	ENST00000409137	human	ensembl	74_37	+1	known	splice_site	c.241+2	e4+2	1.000	-	-	-	no_errors	PPP1R1C	HGNC	ENSG00000150722				113	0	0	100	49	32.8859
PDE1A	0	genome.wustl.edu	37	2	183088619	183088619	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	183088619	183088619	T	C	SNP	PDE1A	ENST00000456212	human	ensembl	74_37	-1	known	missense	c.796	p.T266A	1.000	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom,prints_PDEase	pfam_PDEase_catalytic_dom,pfam_PDEase_N,superfamily_GRIP,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE1A	HGNC	ENSG00000115252				62	0	0	39	3	7.14286
MFSD6	0	genome.wustl.edu	37	2	191301681	191301681	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	191301681	191301681	T	C	SNP	MFSD6	ENST00000281416	human	ensembl	74_37	+1	known	missense	c.926	p.V309A	1.000	superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	MFSD6	HGNC	ENSG00000151690				165	0	0	207	18	8
PGAP1	0	genome.wustl.edu	37	2	197729777	197729777	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	197729777	197729777	G	A	SNP	PGAP1	ENST00000354764	human	ensembl	74_37	-1	known	missense	c.1795	p.P599S	1.000	NULL	pfam_PGAP1-like	-	no_errors	PGAP1	HGNC	ENSG00000197121				63	0	0	33	8	19.5122
AOX1	0	genome.wustl.edu	37	2	201478593	201478593	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	201478593	201478593	C	T	SNP	AOX1	ENST00000374700	human	ensembl	74_37	+1	known	silent	c.1515	p.G505	0.894	pfam_CO_DH_flav_C,superfamily_CO_DH_flav_C,pirsf_Ald_Oxase/xanthine_DH,tigrfam_Aldehyde_oxidase	pfam_AldOxase/xan_DH_Mopterin-bd,pfam_Mopterin_DH_FAD-bd,pfam_Ald_Oxase/Xan_DH_a/b,pfam_2Fe-2S-bd,pfam_CO_DH_flav_C,pfam_2Fe-2S_ferredoxin-type,superfamily_AldOxase/xan_DH_Mopterin-bd,superfamily_FAD-bd_2,superfamily_Ald_Oxase/Xan_DH_a/b,superfamily_2Fe-2S-bd,superfamily_CO_DH_flav_C,superfamily_2Fe-2S_ferredoxin-type,pirsf_Ald_Oxase/xanthine_DH,pfscan_2Fe-2S_ferredoxin-type,tigrfam_Aldehyde_oxidase	-	no_errors	AOX1	HGNC	ENSG00000138356				53	0	0	67	5	6.94444
MPP4	0	genome.wustl.edu	37	2	202546262	202546262	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	202546262	202546262	T	G	SNP	MPP4	ENST00000359962	human	ensembl	74_37	-1	known	missense	c.689	p.K230T	1.000	pfam_PDZ,superfamily_SH3_domain,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_GK/Ca_channel_bsu,pfam_L27_C,pfam_PDZ,pfam_SH3_2,pfam_SH3_domain,superfamily_P-loop_NTPase,superfamily_SH3_domain,superfamily_PDZ,smart_L27,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like	-	no_errors	MPP4	HGNC	ENSG00000082126				45	0	0	33	11	25
FZD7	0	genome.wustl.edu	37	2	202900082	202900082	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	202900082	202900082	C	T	SNP	FZD7	ENST00000286201	human	ensembl	74_37	+1	known	missense	c.712	p.R238C	1.000	NULL	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	FZD7	HGNC	ENSG00000155760				56	0	0	78	13	14.2857
NDUFS1	0	genome.wustl.edu	37	2	206991509	206991509	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	206991509	206991509	T	G	SNP	NDUFS1	ENST00000455934	human	ensembl	74_37	-1	known	missense	c.1986	p.E662D	1.000	NULL	pfam_Mopterin_OxRdtase,pfam_NADH_UbQ_OxRdtase_Gsu_4Fe4S-bd,pfam_NuoG_C,pfam_2Fe-2S_ferredoxin-type,superfamily_2Fe-2S_ferredoxin-type,smart_NADH_UbQ_OxRdtase_Gsu_4Fe4S-bd,pfscan_2Fe-2S_ferredoxin-type,tigrfam_NADH_UbQ_OxRdtase_Gsu	-	no_errors	NDUFS1	HGNC	ENSG00000023228				173	0	0	93	54	36.7347
CCNYL1	0	genome.wustl.edu	37	2	208618400	208618400	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	208618400	208618400	G	A	SNP	CCNYL1	ENST00000295414	human	ensembl	74_37	+1	known	missense	c.1058	p.R353H	1.000	pirsf_Cyclin_Y	pfam_Cyclin_N,pfam_Cyclin_PHO80-like,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_Y	-	no_errors	CCNYL1	HGNC	ENSG00000163249				119	1	0.833333	66	31	31.9588
UNC80	0	genome.wustl.edu	37	2	210658516	210658516	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	210658516	210658516	C	T	SNP	UNC80	ENST00000439458	human	ensembl	74_37	+1	known	nonsense	c.871	p.R291*	1.000	NULL	NULL	-	no_errors	UNC80	HGNC	ENSG00000144406				73	0	0	60	8	11.7647
APOB	0	genome.wustl.edu	37	2	21231016	21231016	+	Silent	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	21231016	21231016	G	A	SNP	APOB	ENST00000233242	human	ensembl	74_37	-1	known	silent	c.8724	p.N2908	0.458	NULL	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674				245	0	0	215	26	10.7884
AAMP	0	genome.wustl.edu	37	2	219130406	219130406	+	Splice_Site	SNP	C	C	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	219130406	219130406	C	A	SNP	AAMP	ENST00000248450	human	ensembl	74_37	-1	known	splice_site	c.880-1	e8-1	1.000	-	-	-	no_errors	AAMP	HGNC	ENSG00000127837				81	0	0	107	6	5.30973
CYP27A1	0	genome.wustl.edu	37	2	219674400	219674400	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	219674400	219674400	G	A	SNP	CYP27A1	ENST00000258415	human	ensembl	74_37	+1	known	missense	c.356	p.R119Q	1.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450	-	no_errors	CYP27A1	HGNC	ENSG00000135929				144	0	0	136	83	37.8995
IHH	0	genome.wustl.edu	37	2	219920330	219920330	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	219920330	219920330	T	C	SNP	IHH	ENST00000295731	human	ensembl	74_37	-1	known	missense	c.835	p.T279A	0.923	pirsf_Hedgehog,pfam_Hint_dom,smart_Hint_dom_N,prints_Hedgehog,pfscan_Intein_splice_site	pirsf_Hedgehog,pfam_Hedgehog_signaling_dom,pfam_Hint_dom,superfamily_Hedgehog_sig/DD-Pept_Zn-bd_dom,smart_Hint_dom_N,smart_Hint_dom_C,prints_Hedgehog,pfscan_Intein_splice_site	-	no_errors	IHH	HGNC	ENSG00000163501				39	0	0	48	4	7.69231
TMEM198	0	genome.wustl.edu	37	2	220409409	220409409	+	Splice_Site	SNP	A	A	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	220409409	220409409	A	G	SNP	TMEM198	ENST00000373883	human	ensembl	74_37	+1	known	splice_site	c.1-2	e1-2	0.966	-	-	-	no_errors	TMEM198	HGNC	ENSG00000188760				53	0	0	44	20	31.25
WDFY1	0	genome.wustl.edu	37	2	224782711	224782711	+	Silent	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	224782711	224782711	G	A	SNP	WDFY1	ENST00000233055	human	ensembl	74_37	-1	known	silent	c.154	p.L52	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	pfam_WD40_repeat,pfam_Znf_FYVE,superfamily_WD40_repeat_dom,superfamily_Znf_FYVE_PHD,smart_WD40_repeat,smart_Znf_FYVE,pfscan_Znf_FYVE-rel,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDFY1	HGNC	ENSG00000085449				74	0	0	52	12	18.75
FAM124B	0	genome.wustl.edu	37	2	225265836	225265836	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	225265836	225265836	G	T	SNP	FAM124B	ENST00000409685	human	ensembl	74_37	-1	known	missense	c.650	p.P217H	1.000	NULL	NULL	-	no_errors	FAM124B	HGNC	ENSG00000124019				75	0	0	68	6	8.10811
TRIP12	0	genome.wustl.edu	37	2	230723553	230723553	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	230723553	230723553	A	G	SNP	TRIP12	ENST00000283943	human	ensembl	74_37	-1	known	missense	c.836	p.L279P	1.000	NULL	pfam_HECT,superfamily_HECT,superfamily_ARM-type_fold,smart_HECT,pfscan_HECT,pfscan_WWE-dom	-	no_errors	TRIP12	HGNC	ENSG00000153827				98	0	0	70	8	10.2564
ALPI	0	genome.wustl.edu	37	2	233322527	233322527	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	233322527	233322527	G	A	SNP	ALPI	ENST00000295463	human	ensembl	74_37	+1	known	missense	c.806	p.R269H	0.320	pfam_Alkaline_phosphatase,superfamily_Alkaline_phosphatase_core,smart_Alkaline_phosphatase	pfam_Alkaline_phosphatase,superfamily_Alkaline_phosphatase_core,smart_Alkaline_phosphatase,prints_Alkaline_phosphatase	-	no_errors	ALPI	HGNC	ENSG00000163295				109	0	0	145	18	11.0429
HJURP	0	genome.wustl.edu	37	2	234749594	234749594	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	234749594	234749594	T	C	SNP	HJURP	ENST00000411486	human	ensembl	74_37	-1	known	missense	c.1832	p.K611R	0.000	pfam_HJURP_C	pfam_HJURP,pfam_HJURP_C,pfam_Centromere_Scm3_N	-	no_errors	HJURP	HGNC	ENSG00000123485				126	0	0	85	47	35.6061
GBX2	0	genome.wustl.edu	37	2	237076276	237076276	+	Silent	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	237076276	237076276	G	A	SNP	GBX2	ENST00000306318	human	ensembl	74_37	-1	known	silent	c.339	p.S113	0.744	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	GBX2	HGNC	ENSG00000168505				20	0	0	37	19	33.9286
COPS8	0	genome.wustl.edu	37	2	238002750	238002750	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	238002750	238002750	G	A	SNP	COPS8	ENST00000354371	human	ensembl	74_37	+1	known	missense	c.349	p.A117T	1.000	NULL	NULL	-	no_errors	COPS8	HGNC	ENSG00000198612				149	0	0	160	16	9.09091
MLPH	0	genome.wustl.edu	37	2	238419298	238419298	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	238419298	238419298	C	T	SNP	MLPH	ENST00000264605	human	ensembl	74_37	+1	known	silent	c.192	p.C64	0.639	superfamily_Znf_FYVE_PHD,pfscan_Znf_FYVE-typ	pfam_Myrip/Melanophilin,superfamily_Znf_FYVE_PHD,pfscan_Znf_FYVE-typ	-	no_errors	MLPH	HGNC	ENSG00000115648				62	0	0	37	27	42.1875
OR6B2	0	genome.wustl.edu	37	2	240969039	240969039	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	240969039	240969039	A	G	SNP	OR6B2	ENST00000402971	human	ensembl	74_37	-1	known	missense	c.808	p.S270P	0.078	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6B2	HGNC	ENSG00000182083				124	0	0	118	16	11.9403
MYEOV2	0	genome.wustl.edu	37	2	241070388	241070388	+	RNA	SNP	A	A	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	241070388	241070388	A	T	SNP	MYEOV2	ENST00000489698	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	MYEOV2	HGNC	ENSG00000172428				14	0	0	18	2	10
DTNB	0	genome.wustl.edu	37	2	25799766	25799766	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	25799766	25799766	G	A	SNP	DTNB	ENST00000406818	human	ensembl	74_37	-1	known	missense	c.817	p.R273C	1.000	pfam_Znf_ZZ,smart_Znf_ZZ,pirsf_Distrobrevin,pfscan_Znf_ZZ	pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_Znf_ZZ,smart_Znf_ZZ,pirsf_Distrobrevin,pfscan_Znf_ZZ	-	no_errors	DTNB	HGNC	ENSG00000138101				33	0	0	15	13	46.4286
NRBP1	0	genome.wustl.edu	37	2	27662650	27662650	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	27662650	27662650	C	T	SNP	NRBP1	ENST00000233557	human	ensembl	74_37	+1	known	silent	c.921	p.C307	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	NRBP1	HGNC	ENSG00000115216				204	0	0	163	76	31.7992
IFT172	0	genome.wustl.edu	37	2	27684328	27684328	+	Silent	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	27684328	27684328	T	C	SNP	IFT172	ENST00000260570	human	ensembl	74_37	-1	known	silent	c.2250	p.T750	0.599	superfamily_ARM-type_fold	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat	-	no_errors	IFT172	HGNC	ENSG00000138002				127	0	0	137	40	22.5989
RBKS	0	genome.wustl.edu	37	2	28004550	28004550	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	28004550	28004550	T	G	SNP	RBKS	ENST00000302188	human	ensembl	74_37	-1	known	missense	c.901	p.S301R	1.000	pfam_PfkB_dom,tigrfam_D_ribokin_bac	pfam_PfkB_dom,pfam_HMP-P_kinase-1,prints_Ribokinase,tigrfam_D_ribokin_bac	-	no_errors	RBKS	HGNC	ENSG00000171174				144	0	0	90	28	23.7288
C2orf71	0	genome.wustl.edu	37	2	29294952	29294952	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	29294952	29294952	G	A	SNP	C2orf71	ENST00000331664	human	ensembl	74_37	-1	known	missense	c.2176	p.P726S	0.126	NULL	NULL	-	no_errors	C2orf71	HGNC	ENSG00000179270				104	0	0	99	13	11.6071
SLC8A1	0	genome.wustl.edu	37	2	40656482	40656482	+	Silent	SNP	A	A	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	40656482	40656482	A	G	SNP	SLC8A1	ENST00000332839	human	ensembl	74_37	-1	known	silent	c.939	p.D313	0.985	pfscan_DnaJ_domain,tigrfam_Na_Ca_Ex	pfam_NaCa_Exmemb,pfam_Calx_beta,smart_Calx_beta,pfscan_DnaJ_domain,prints_Na_Ca_Ex,prints_NaCa_exhngr1,tigrfam_Na_Ca_Ex	-	no_errors	SLC8A1	HGNC	ENSG00000183023				207	1	0.480769	181	28	13.3971
EML4	0	genome.wustl.edu	37	2	42543190	42543190	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	42543190	42543190	G	T	SNP	EML4	ENST00000318522	human	ensembl	74_37	+1	known	missense	c.2056	p.D686Y	1.000	pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like_supfam,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_HELP,pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like_supfam,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EML4	HGNC	ENSG00000143924				113	0	0	90	6	6.25
ZFP36L2	0	genome.wustl.edu	37	2	43452530	43452530	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	43452530	43452530	T	A	SNP	ZFP36L2	ENST00000282388	human	ensembl	74_37	-1	known	missense	c.413	p.Q138L	1.000	pfam_Tis11B_N	pfam_Tis11B_N,pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZFP36L2	HGNC	ENSG00000152518				23	0	0	44	4	8.33333
SOCS5	0	genome.wustl.edu	37	2	46986749	46986749	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	46986749	46986749	C	T	SNP	SOCS5	ENST00000306503	human	ensembl	74_37	+1	known	silent	c.1080	p.H360	0.999	NULL	pfam_SOCS,pfam_SOCS_C,pfam_SH2,smart_SH2,smart_SOCS_C,pfscan_SOCS_C,pfscan_SH2	-	no_errors	SOCS5	HGNC	ENSG00000171150				88	0	0	73	32	30.4762
SOX11	0	genome.wustl.edu	37	2	5832927	5832927	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	5832927	5832927	A	C	SNP	SOX11	ENST00000322002	human	ensembl	74_37	+1	known	missense	c.74	p.E25A	1.000	pirsf_SOX-12/11/4a	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pirsf_SOX-12/11/4a,pfscan_HMG_box_dom	-	no_errors	SOX11	HGNC	ENSG00000176887				28	0	0	31	9	22.5
SLC1A4	0	genome.wustl.edu	37	2	65245255	65245255	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	65245255	65245255	T	C	SNP	SLC1A4	ENST00000234256	human	ensembl	74_37	+1	known	missense	c.1085	p.V362A	1.000	pfam_Na-dicarboxylate_symporter	pfam_Na-dicarboxylate_symporter,prints_Na-dicarboxylate_symporter	-	no_errors	SLC1A4	HGNC	ENSG00000115902				105	1	0.943396	107	24	18.3206
SPRED2	0	genome.wustl.edu	37	2	65541010	65541010	+	Silent	SNP	C	C	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	65541010	65541010	C	A	SNP	SPRED2	ENST00000356388	human	ensembl	74_37	-1	known	silent	c.882	p.R294	0.909	NULL	pfam_Sprouty,pfam_WH1/EVH1,smart_WH1/EVH1,pfscan_WH1/EVH1	-	no_errors	SPRED2	HGNC	ENSG00000198369				124	0	0	137	49	26.3441
ZNF638	0	genome.wustl.edu	37	2	71607362	71607362	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	71607362	71607362	T	C	SNP	ZNF638	ENST00000264447	human	ensembl	74_37	+1	known	missense	c.2276	p.V759A	1.000	NULL	pfam_RRM_dom,smart_Znf_U1,smart_Znf_C2H2-like,smart_RRM_dom,pfscan_Znf_C2H2_matrin,pfscan_RRM_dom	-	no_errors	ZNF638	HGNC	ENSG00000075292				55	0	0	28	11	28.2051
POLR1A	0	genome.wustl.edu	37	2	86272846	86272846	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	86272846	86272846	G	A	SNP	POLR1A	ENST00000263857	human	ensembl	74_37	-1	known	missense	c.2780	p.P927L	1.000	pfam_RNA_pol_Rpb1_4	pfam_RNA_pol_Rpb1_5,pfam_RNA_pol_asu,pfam_RNA_pol_Rpb1_3,pfam_RNA_pol_Rpb1_4,pfam_RNA_pol_Rpb1_1,smart_RNA_pol_N	-	no_errors	POLR1A	HGNC	ENSG00000068654				93	0	0	93	9	8.82353
MBOAT2	0	genome.wustl.edu	37	2	9013332	9013332	+	Silent	SNP	A	A	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	9013332	9013332	A	G	SNP	MBOAT2	ENST00000305997	human	ensembl	74_37	-1	known	silent	c.789	p.H263	0.996	pfam_MBOAT_fam	pfam_MBOAT_fam,superfamily_MFS_dom_general_subst_transpt	-	no_errors	MBOAT2	HGNC	ENSG00000143797				64	0	0	71	8	10.1266
TMEM127	0	genome.wustl.edu	37	2	96919847	96919847	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	96919847	96919847	T	C	SNP	TMEM127	ENST00000258439	human	ensembl	74_37	-1	known	missense	c.416	p.Q139R	1.000	NULL	NULL	-	no_errors	TMEM127	HGNC	ENSG00000135956				82	0	0	66	32	32.6531
SNRNP200	0	genome.wustl.edu	37	2	96963431	96963431	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	96963431	96963431	G	A	SNP	SNRNP200	ENST00000323853	human	ensembl	74_37	-1	known	missense	c.1147	p.R383C	0.998	superfamily_P-loop_NTPase	pfam_Sec63-dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Sec63-dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SNRNP200	HGNC	ENSG00000144028				90	0	0	76	11	12.6437
ARID5A	0	genome.wustl.edu	37	2	97217888	97217888	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	97217888	97217888	C	T	SNP	ARID5A	ENST00000357485	human	ensembl	74_37	+1	known	silent	c.1623	p.T541	0.002	NULL	pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID5A	HGNC	ENSG00000196843				129	0	0	185	57	23.5537
FAHD2B	0	genome.wustl.edu	37	2	97751598	97751598	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	97751598	97751598	C	T	SNP	FAHD2B	ENST00000272610	human	ensembl	74_37	-1	known	missense	c.523	p.A175T	1.000	pfam_Fumarylacetoacetase_C,superfamily_Fumarylacetoacetase_C-rel	pfam_Fumarylacetoacetase_C,superfamily_Fumarylacetoacetase_C-rel	-	no_errors	FAHD2B	HGNC	ENSG00000144199				94	0	0	104	12	10.3448
KIAA1211L	0	genome.wustl.edu	37	2	99448879	99448879	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	99448879	99448879	C	T	SNP	KIAA1211L	ENST00000397899	human	ensembl	74_37	-1	known	missense	c.472	p.D158N	0.969	NULL	NULL	-	no_errors	KIAA1211L	HGNC	ENSG00000196872				79	0	0	63	31	32.9787
CST2	0	genome.wustl.edu	37	20	23807170	23807170	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	20	23807170	23807170	C	T	SNP	CST2	ENST00000304725	human	ensembl	74_37	-1	known	missense	c.128	p.R43Q	0.002	pfam_Prot_inh_cystat,smart_Prot_inh_cystat	pfam_Prot_inh_cystat,smart_Prot_inh_cystat	-	no_errors	CST2	HGNC	ENSG00000170369				64	0	0	46	4	8
TGM6	0	genome.wustl.edu	37	20	2397897	2397897	+	Silent	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	20	2397897	2397897	G	A	SNP	TGM6	ENST00000202625	human	ensembl	74_37	+1	known	silent	c.1356	p.Q452	1.000	NULL	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM6	HGNC	ENSG00000166948				17	0	0	11	8	42.1053
ZNF343	0	genome.wustl.edu	37	20	2464827	2464827	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	20	2464827	2464827	C	T	SNP	ZNF343	ENST00000278772	human	ensembl	74_37	-1	known	silent	c.780	p.P260	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF343	HGNC	ENSG00000088876				133	0	0	69	28	28.866
TM9SF4	0	genome.wustl.edu	37	20	30733169	30733169	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	20	30733169	30733169	G	A	SNP	TM9SF4	ENST00000398022	human	ensembl	74_37	+1	known	missense	c.826	p.V276I	1.000	pfam_EMP70	pfam_EMP70	-	no_errors	TM9SF4	HGNC	ENSG00000101337				91	0	0	43	26	37.6812
CHMP4B	0	genome.wustl.edu	37	20	32439984	32439984	+	Silent	SNP	C	C	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	20	32439984	32439984	C	A	SNP	CHMP4B	ENST00000217402	human	ensembl	74_37	+1	known	silent	c.585	p.P195	0.923	pfam_Snf7	pfam_Snf7	-	no_errors	CHMP4B	HGNC	ENSG00000101421				240	0	0	170	15	8.10811
AHCY	0	genome.wustl.edu	37	20	32883286	32883286	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	20	32883286	32883286	A	C	SNP	AHCY	ENST00000217426	human	ensembl	74_37	-1	known	missense	c.134	p.L45R	1.000	pfam_Adenosylhomocysteinase,pirsf_Adenosylhomocysteinase,tigrfam_Adenosylhomocysteinase	pfam_Adenosylhomocysteinase,pfam_Ado_hCys_hydrolase_NAD-bd,pfam_D-isomer_2_OHA_DH_NAD-bd,pfam_IlvN,pirsf_Adenosylhomocysteinase,tigrfam_Adenosylhomocysteinase	-	no_errors	AHCY	HGNC	ENSG00000101444				35	0	0	33	4	10.8108
GSS	0	genome.wustl.edu	37	20	33523414	33523414	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	20	33523414	33523414	G	A	SNP	GSS	ENST00000216951	human	ensembl	74_37	-1	known	missense	c.799	p.R267W	1.000	pfam_Glutathione_synthase_euk,pfam_Glutathione_synth_subst-bd_euk,superfamily_PreATP-grasp_dom,pirsf_Glutathione_synthase_euk,tigrfam_Glutathione_synthase_euk	pfam_Glutathione_synthase_euk,pfam_Glutathione_synth_subst-bd_euk,superfamily_PreATP-grasp_dom,pirsf_Glutathione_synthase_euk,tigrfam_Glutathione_synthase_euk	-	no_errors	GSS	HGNC	ENSG00000100983				73	0	0	66	5	7.04225
RBM12	0	genome.wustl.edu	37	20	34243085	34243085	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	20	34243085	34243085	T	C	SNP	RBM12	ENST00000359646	human	ensembl	74_37	-1	known	missense	c.160	p.R54G	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM12	HGNC	ENSG00000244462				51	0	0	62	5	7.46269
MYL9	0	genome.wustl.edu	37	20	35176475	35176475	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	20	35176475	35176475	C	T	SNP	MYL9	ENST00000279022	human	ensembl	74_37	+1	known	silent	c.225	p.S75	0.587	NULL	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	MYL9	HGNC	ENSG00000101335				37	0	0	35	3	7.89474
LPIN3	0	genome.wustl.edu	37	20	39980775	39980775	+	Silent	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	20	39980775	39980775	T	C	SNP	LPIN3	ENST00000373257	human	ensembl	74_37	+1	known	silent	c.1278	p.H426	0.000	NULL	pfam_LNS2,pfam_Lipin_N,superfamily_HAD-like_dom,smart_LNS2	-	no_errors	LPIN3	HGNC	ENSG00000132793				122	0	0	78	42	35
TBC1D20	0	genome.wustl.edu	37	20	419299	419299	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	20	419299	419299	C	T	SNP	TBC1D20	ENST00000354200	human	ensembl	74_37	-1	known	silent	c.1143	p.A381	0.039	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D20	HGNC	ENSG00000125875				142	0	0	170	20	10.5263
SEMG2	0	genome.wustl.edu	37	20	43851236	43851236	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	20	43851236	43851236	A	C	SNP	SEMG2	ENST00000372769	human	ensembl	74_37	+1	known	missense	c.963	p.K321N	0.000	pfam_Semenogelin	pfam_Semenogelin	-	no_errors	SEMG2	HGNC	ENSG00000124157				72	0	0	45	4	8.16327
MATN4	0	genome.wustl.edu	37	20	43933091	43933091	+	Silent	SNP	A	A	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	20	43933091	43933091	A	G	SNP	MATN4	ENST00000372754	human	ensembl	74_37	-1	known	silent	c.420	p.R140	0.651	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_EGF-like_Ca-bd_dom,pfam_Matrilin_coiled-coil_trimer,smart_VWF_A,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_VWF_A	-	no_errors	MATN4	HGNC	ENSG00000124159				11	0	0	19	3	13.6364
PLTP	0	genome.wustl.edu	37	20	44533614	44533614	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	20	44533614	44533614	C	T	SNP	PLTP	ENST00000542937	human	ensembl	74_37	-1	known	silent	c.909	p.A303	0.005	pfam_Lipid-bd_serum_glycop_C,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_C	pfam_Lipid-bd_serum_glycop_C,pfam_Lipid-bd_serum_glycop_N,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_N,smart_Lipid-bd_serum_glycop_C	-	no_errors	PLTP	HGNC	ENSG00000100979				55	0	0	74	6	7.5
SLC9A8	0	genome.wustl.edu	37	20	48503419	48503419	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	20	48503419	48503419	G	A	SNP	SLC9A8	ENST00000417961	human	ensembl	74_37	+1	known	missense	c.1670	p.R557Q	1.000	NULL	pfam_Cation/H_exchanger,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A8	HGNC	ENSG00000197818				81	0	0	60	32	34.7826
PCK1	0	genome.wustl.edu	37	20	56138681	56138681	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	20	56138681	56138681	G	A	SNP	PCK1	ENST00000319441	human	ensembl	74_37	+1	known	missense	c.859	p.A287T	1.000	pfam_PEP_carboxykinase_GTP,pirsf_PEP_carboxykinase_GTP	pfam_PEP_carboxykinase_GTP,superfamily_PEP_carboxykinase_N,pirsf_PEP_carboxykinase_GTP	-	no_errors	PCK1	HGNC	ENSG00000124253				86	0	0	65	35	35
STX16-NPEPL1	0	genome.wustl.edu	37	20	57227154	57227154	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	20	57227154	57227154	A	G	SNP	STX16-NPEPL1	ENST00000530122	human	ensembl	74_37	+1	known	missense	c.92	p.H31R	1.000	NULL	pfam_T_SNARE_dom,pfam_Syntaxin_N,superfamily_t-SNARE,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	STX16-NPEPL1	HGNC	ENSG00000254995				59	0	0	52	5	8.77193
FERMT1	0	genome.wustl.edu	37	20	6088264	6088264	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	20	6088264	6088264	C	T	SNP	FERMT1	ENST00000217289	human	ensembl	74_37	-1	known	missense	c.764	p.R255H	1.000	pfam_FERM_N,smart_Band_41_domain	pfam_FERM_central,pfam_FERM_N,superfamily_FERM_central,smart_Band_41_domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	FERMT1	HGNC	ENSG00000101311				46	0	0	15	9	37.5
BHLHE23	0	genome.wustl.edu	37	20	61637673	61637673	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	20	61637673	61637673	G	A	SNP	BHLHE23	ENST00000370346	human	ensembl	74_37	-1	known	missense	c.406	p.R136C	1.000	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	BHLHE23	HGNC	ENSG00000125533				48	0	0	45	3	6.25
ZGPAT	0	genome.wustl.edu	37	20	62366010	62366010	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	20	62366010	62366010	C	T	SNP	ZGPAT	ENST00000328969	human	ensembl	74_37	+1	known	silent	c.885	p.D295	0.016	NULL	pfam_G_patch_dom,smart_Znf_CCCH,smart_G_patch_dom,pfscan_G_patch_dom	-	no_errors	ZGPAT	HGNC	ENSG00000197114				173	0	0	130	68	34.3434
TPTE	0	genome.wustl.edu	37	21	10942730	10942730	+	Silent	SNP	T	T	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	21	10942730	10942730	T	G	SNP	TPTE	ENST00000361285	human	ensembl	74_37	-1	known	silent	c.711	p.L237	0.998	pfscan_Phosphatase_tensin-typ	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Ion_trans_dom,superfamily_C2_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TPTE	HGNC	ENSG00000166157				555	0	0	369	22	5.6266
POTED	0	genome.wustl.edu	37	21	14982981	14982981	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	21	14982981	14982981	C	A	SNP	POTED	ENST00000299443	human	ensembl	74_37	+1	known	missense	c.432	p.H144Q	0.321	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	POTED	HGNC	ENSG00000166351				115	0	0	131	16	10.8844
APP	0	genome.wustl.edu	37	21	27328060	27328060	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	21	27328060	27328060	C	T	SNP	APP	ENST00000346798	human	ensembl	74_37	-1	known	missense	c.1468	p.V490M	1.000	superfamily_Amyloid_glyco_E2_domain	pfam_Amyloid_glyco_heparin-bd,pfam_APP_amyloid_C,pfam_Amyloid_glyco_Abeta,pfam_Prot_inh_Kunz-m,superfamily_Amyloid_glyco_E2_domain,superfamily_Amyloid_glyco_heparin-bd,superfamily_Amyloid_glyco_Cu-bd,superfamily_Prot_inh_Kunz-m,smart_Amyloid_glyco_extra,smart_Prot_inh_Kunz-m,prints_Amyloid_glyco,prints_Amyloid_glyco_Abeta,prints_Prot_inh_Kunz-m,pfscan_Prot_inh_Kunz-m	-	no_errors	APP	HGNC	ENSG00000142192				90	0	0	59	11	15.7143
TIAM1	0	genome.wustl.edu	37	21	32595734	32595734	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	21	32595734	32595734	C	T	SNP	TIAM1	ENST00000286827	human	ensembl	74_37	-1	known	silent	c.1983	p.S661	0.995	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Raf-like_ras-bd,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_Pleckstrin_homology,smart_Raf-like_ras-bd,smart_PDZ,smart_DH-domain,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Raf-like_ras-bd,pfscan_DH-domain	-	no_errors	TIAM1	HGNC	ENSG00000156299				123	0	0	92	24	20.6897
ERG	0	genome.wustl.edu	37	21	39775628	39775628	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	21	39775628	39775628	G	T	SNP	ERG	ENST00000398919	human	ensembl	74_37	-1	known	missense	c.413	p.P138H	1.000	pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom	pfam_Ets_dom,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	ERG	HGNC	ENSG00000157554				85	0	0	45	3	6.25
UMODL1	0	genome.wustl.edu	37	21	43496242	43496242	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	21	43496242	43496242	C	T	SNP	UMODL1	ENST00000408989	human	ensembl	74_37	+1	known	missense	c.205	p.R69W	0.000	pfam_EMI_domain,pfscan_EMI_domain	pfam_ZP_dom,pfam_SEA_dom,pfam_EGF-like_Ca-bd_dom,pfam_EMI_domain,pfam_WAP-type_4-diS_core,superfamily_Fibronectin_type3,superfamily_WAP-type_4-diS_core,smart_WAP-type_4-diS_core,smart_EGF-like_Ca-bd_dom,smart_Fibronectin_type3,smart_ZP_dom,pfscan_EG-like_dom,pfscan_EMI_domain,pfscan_Fibronectin_type3,pfscan_ZP_dom,prints_ZP_dom	-	no_errors	UMODL1	HGNC	ENSG00000177398				75	0	0	78	13	14.2857
UMODL1	0	genome.wustl.edu	37	21	43529775	43529775	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	21	43529775	43529775	C	T	SNP	UMODL1	ENST00000408989	human	ensembl	74_37	+1	known	silent	c.1623	p.D541	0.621	smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	pfam_ZP_dom,pfam_SEA_dom,pfam_EGF-like_Ca-bd_dom,pfam_EMI_domain,pfam_WAP-type_4-diS_core,superfamily_Fibronectin_type3,superfamily_WAP-type_4-diS_core,smart_WAP-type_4-diS_core,smart_EGF-like_Ca-bd_dom,smart_Fibronectin_type3,smart_ZP_dom,pfscan_EG-like_dom,pfscan_EMI_domain,pfscan_Fibronectin_type3,pfscan_ZP_dom,prints_ZP_dom	-	no_errors	UMODL1	HGNC	ENSG00000177398				52	0	0	86	17	16.5049
C21orf58	0	genome.wustl.edu	37	21	47722461	47722461	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	21	47722461	47722461	C	T	SNP	C21orf58	ENST00000291691	human	ensembl	74_37	-1	known	missense	c.751	p.A251T	0.418	NULL	NULL	-	no_errors	C21orf58	HGNC	ENSG00000160298				16	0	0	23	3	11.5385
BID	0	genome.wustl.edu	37	22	18220977	18220977	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	22	18220977	18220977	C	T	SNP	BID	ENST00000317361	human	ensembl	74_37	-1	known	missense	c.520	p.A174T	0.578	pfam_BID	pfam_BID	-	no_errors	BID	HGNC	ENSG00000015475				56	0	0	57	16	21.9178
C22orf39	0	genome.wustl.edu	37	22	19398267	19398267	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	22	19398267	19398267	G	A	SNP	C22orf39	ENST00000509549	human	ensembl	74_37	-1	known	missense	c.227	p.T76M	1.000	NULL	NULL	-	no_errors	C22orf39	HGNC	ENSG00000242259				299	0	0	204	68	25
TANGO2	0	genome.wustl.edu	37	22	20050943	20050943	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	22	20050943	20050943	C	T	SNP	TANGO2	ENST00000456048	human	ensembl	74_37	+1	known	missense	c.703	p.R235C	1.000	pfam_DUF833	pfam_DUF833	-	no_errors	TANGO2	HGNC	ENSG00000183597				46	0	0	30	8	21.0526
ZNF74	0	genome.wustl.edu	37	22	20749701	20749701	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	22	20749701	20749701	G	A	SNP	ZNF74	ENST00000356671	human	ensembl	74_37	+1	known	missense	c.113	p.R38K	0.948	superfamily_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF74	HGNC	ENSG00000185252				101	0	0	84	20	19.2308
PI4KA	0	genome.wustl.edu	37	22	21161703	21161703	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	22	21161703	21161703	G	T	SNP	PI4KA	ENST00000255882	human	ensembl	74_37	-1	known	missense	c.1115	p.P372H	1.000	superfamily_ARM-type_fold	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PI4KA	HGNC	ENSG00000241973				40	0	0	37	5	11.9048
DERL3	0	genome.wustl.edu	37	22	24180574	24180574	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	22	24180574	24180574	C	T	SNP	DERL3	ENST00000318109	human	ensembl	74_37	-1	known	missense	c.292	p.V98I	1.000	pfam_DER1	pfam_DER1	-	no_errors	DERL3	HGNC	ENSG00000099958				26	0	0	14	5	26.3158
MIF	0	genome.wustl.edu	37	22	24236713	24236713	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	22	24236713	24236713	G	T	SNP	MIF	ENST00000215754	human	ensembl	74_37	+1	known	missense	c.52	p.G18W	0.995	pfam_Macrophage_inhib_fac,superfamily_Tautomerase/MIF_sf	pfam_Macrophage_inhib_fac,superfamily_Tautomerase/MIF_sf	-	no_errors	MIF	HGNC	ENSG00000240972				65	0	0	60	6	9.09091
CABIN1	0	genome.wustl.edu	37	22	24530289	24530289	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	22	24530289	24530289	C	T	SNP	CABIN1	ENST00000263119	human	ensembl	74_37	+1	known	silent	c.4653	p.D1551	0.996	NULL	pfam_MEF2_binding,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	CABIN1	HGNC	ENSG00000099991				32	0	0	31	7	18.4211
CRYBB3	0	genome.wustl.edu	37	22	25598726	25598726	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	22	25598726	25598726	A	C	SNP	CRYBB3	ENST00000215855	human	ensembl	74_37	+1	known	missense	c.161	p.E54A	1.000	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	CRYBB3	HGNC	ENSG00000100053				83	0	0	55	15	21.4286
EWSR1	0	genome.wustl.edu	37	22	29668385	29668385	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	22	29668385	29668385	G	A	SNP	EWSR1	ENST00000414183	human	ensembl	74_37	+1	known	missense	c.67	p.A23T	1.000	NULL	pfam_Znf_RanBP2,pfam_RRM_dom,smart_RRM_dom,smart_Znf_RanBP2,pfscan_Znf_RanBP2,pfscan_RRM_dom	-	no_errors	EWSR1	HGNC	ENSG00000182944				49	0	0	56	21	27.2727
EIF4ENIF1	0	genome.wustl.edu	37	22	31859034	31859034	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	22	31859034	31859034	G	A	SNP	EIF4ENIF1	ENST00000330125	human	ensembl	74_37	-1	known	missense	c.671	p.A224V	1.000	pfam_eIF4E_transporter	pfam_eIF4E_transporter	-	no_errors	EIF4ENIF1	HGNC	ENSG00000184708				70	0	0	46	6	11.5385
LARGE	0	genome.wustl.edu	37	22	33670462	33670462	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	22	33670462	33670462	C	T	SNP	LARGE	ENST00000354992	human	ensembl	74_37	-1	known	missense	c.2222	p.R741H	1.000	NULL	pfam_Glyco_trans_8	-	no_errors	LARGE	HGNC	ENSG00000133424				195	0	0	149	34	18.5792
TMPRSS6	0	genome.wustl.edu	37	22	37480395	37480395	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	22	37480395	37480395	A	G	SNP	TMPRSS6	ENST00000381792	human	ensembl	74_37	-1	known	missense	c.1136	p.L379P	1.000	pirsf_Pept_S1A_matriptase-2,superfamily_CUB_dom,pfscan_CUB_dom	pirsf_Pept_S1A_matriptase-2,pfam_Peptidase_S1,pfam_LDrepeatLR_classA_rpt,pfam_SEA_dom,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,superfamily_CUB_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_Peptidase_S1,prints_Peptidase_S1A,prints_LDrepeatLR_classA_rpt,pfscan_CUB_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_Peptidase_S1	-	no_errors	TMPRSS6	HGNC	ENSG00000187045				22	0	0	18	4	18.1818
PDGFB	0	genome.wustl.edu	37	22	39621767	39621767	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	22	39621767	39621767	C	T	SNP	PDGFB	ENST00000331163	human	ensembl	74_37	-1	known	silent	c.687	p.T229	0.992	NULL	pfam_PDGF/VEGF_dom,pfam_PDGF_N,smart_PDGF/VEGF_dom,pfscan_PDGF/VEGF_dom	-	no_errors	PDGFB	HGNC	ENSG00000100311				54	0	0	44	7	13.7255
MGAT3	0	genome.wustl.edu	37	22	39884484	39884484	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	22	39884484	39884484	G	A	SNP	MGAT3	ENST00000341184	human	ensembl	74_37	+1	known	missense	c.1132	p.G378S	1.000	pfam_Glyco_trans_17	pfam_Glyco_trans_17	-	no_errors	MGAT3	HGNC	ENSG00000128268				88	0	0	80	24	23.0769
MKL1	0	genome.wustl.edu	37	22	40814585	40814585	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	22	40814585	40814585	C	T	SNP	MKL1	ENST00000355630	human	ensembl	74_37	-1	known	silent	c.1857	p.P619	0.000	NULL	pfam_RPEL_repeat,pfam_SAP_dom,smart_RPEL_repeat,smart_SAP_dom,pfscan_RPEL_repeat,pfscan_SAP_dom	-	no_errors	MKL1	HGNC	ENSG00000196588				37	0	0	44	14	24.1379
EP300	0	genome.wustl.edu	37	22	41556645	41556645	+	Splice_Site	SNP	G	G	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	22	41556645	41556645	G	T	SNP	EP300	ENST00000263253	human	ensembl	74_37	+1	known	splice_site	c.3591-1	e20-1	1.000	-	-	-	no_errors	EP300	HGNC	ENSG00000100393				70	0	0	67	11	14.1026
SAMM50	0	genome.wustl.edu	37	22	44379812	44379812	+	Splice_Site	SNP	G	G	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	22	44379812	44379812	G	T	SNP	SAMM50	ENST00000350028	human	ensembl	74_37	+1	known	splice_site	c.1008-1	e12-1	1.000	-	-	-	no_errors	SAMM50	HGNC	ENSG00000100347				131	0	0	104	11	9.56522
UPK3A	0	genome.wustl.edu	37	22	45681923	45681923	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	22	45681923	45681923	A	G	SNP	UPK3A	ENST00000216211	human	ensembl	74_37	+1	known	missense	c.154	p.K52E	0.001	NULL	NULL	-	no_errors	UPK3A	HGNC	ENSG00000100373				61	0	0	63	14	18.1818
FBLN1	0	genome.wustl.edu	37	22	45944543	45944543	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	22	45944543	45944543	T	C	SNP	FBLN1	ENST00000327858	human	ensembl	74_37	+1	known	missense	c.1492	p.C498R	1.000	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pirsf_Fibulin-1,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd_dom,pfam_Anaphylatoxin/fibulin,smart_Anaphylatoxin/fibulin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pirsf_Fibulin-1,pfscan_Anaphylatoxin/fibulin,pfscan_EG-like_dom	-	no_errors	FBLN1	HGNC	ENSG00000077942				61	0	0	56	22	28.2051
PANX2	0	genome.wustl.edu	37	22	50617614	50617614	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	22	50617614	50617614	G	A	SNP	PANX2	ENST00000395842	human	ensembl	74_37	+1	known	missense	c.1942	p.V648M	0.199	NULL	pfam_Innexin,pfscan_Innexin	-	no_errors	PANX2	HGNC	ENSG00000073150				35	0	0	44	9	16.9811
CD200R1	0	genome.wustl.edu	37	3	112648117	112648117	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	3	112648117	112648117	A	G	SNP	CD200R1	ENST00000308611	human	ensembl	74_37	-1	known	missense	c.440	p.I147T	0.027	NULL	pfam_CD80_C2-set,pfscan_Ig-like_dom	-	no_errors	CD200R1	HGNC	ENSG00000163606				131	0	0	108	20	15.625
BOC	0	genome.wustl.edu	37	3	112969475	112969475	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	3	112969475	112969475	C	T	SNP	BOC	ENST00000273395	human	ensembl	74_37	+1	known	silent	c.171	p.C57	0.040	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	BOC	HGNC	ENSG00000144857				93	0	0	65	19	22.619
BOC	0	genome.wustl.edu	37	3	112993495	112993495	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	3	112993495	112993495	C	T	SNP	BOC	ENST00000273395	human	ensembl	74_37	+1	known	missense	c.1508	p.A503V	0.993	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	BOC	HGNC	ENSG00000144857				75	0	0	51	13	20.3125
CD80	0	genome.wustl.edu	37	3	119263419	119263419	+	Silent	SNP	A	A	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	3	119263419	119263419	A	G	SNP	CD80	ENST00000264246	human	ensembl	74_37	-1	known	silent	c.396	p.A132	0.000	smart_Ig_sub,pfscan_Ig-like_dom	pfam_CD80_C2-set,pfam_Ig_V-set,pfam_Ig_C1-set,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	CD80	HGNC	ENSG00000121594				93	0	0	63	22	25.8824
CD80	0	genome.wustl.edu	37	3	119263442	119263442	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	3	119263442	119263442	C	T	SNP	CD80	ENST00000264246	human	ensembl	74_37	-1	known	missense	c.373	p.A125T	0.000	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_CD80_C2-set,pfam_Ig_V-set,pfam_Ig_C1-set,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	CD80	HGNC	ENSG00000121594				94	0	0	94	5	5.05051
NR1I2	0	genome.wustl.edu	37	3	119534599	119534599	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	3	119534599	119534599	G	A	SNP	NR1I2	ENST00000337940	human	ensembl	74_37	+1	known	missense	c.1198	p.V400M	0.002	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt	-	no_errors	NR1I2	HGNC	ENSG00000144852				26	0	0	21	6	22.2222
PDIA5	0	genome.wustl.edu	37	3	122864423	122864423	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	3	122864423	122864423	T	A	SNP	PDIA5	ENST00000316218	human	ensembl	74_37	+1	known	missense	c.965	p.L322H	1.000	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	pfam_Thioredoxin_domain,pfam_AhpC/TSA,superfamily_Thioredoxin-like_fold,prints_Thioredoxin	-	no_errors	PDIA5	HGNC	ENSG00000065485				61	0	0	49	6	10.9091
PDIA5	0	genome.wustl.edu	37	3	122864424	122864424	+	Silent	SNP	C	C	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	3	122864424	122864424	C	A	SNP	PDIA5	ENST00000316218	human	ensembl	74_37	+1	known	silent	c.966	p.L322	1.000	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	pfam_Thioredoxin_domain,pfam_AhpC/TSA,superfamily_Thioredoxin-like_fold,prints_Thioredoxin	-	no_errors	PDIA5	HGNC	ENSG00000065485				60	0	0	48	6	11.1111
PLXNA1	0	genome.wustl.edu	37	3	126710304	126710304	+	Silent	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	3	126710304	126710304	G	A	SNP	PLXNA1	ENST00000393409	human	ensembl	74_37	+1	known	silent	c.1272	p.T424	0.207	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA1	HGNC	ENSG00000114554				54	0	0	49	4	7.54717
PLXNA1	0	genome.wustl.edu	37	3	126732871	126732871	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	3	126732871	126732871	C	T	SNP	PLXNA1	ENST00000393409	human	ensembl	74_37	+1	known	silent	c.2322	p.Y774	0.984	NULL	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA1	HGNC	ENSG00000114554				150	0	0	126	30	19.2308
COPG1	0	genome.wustl.edu	37	3	128973580	128973580	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	3	128973580	128973580	C	T	SNP	COPG1	ENST00000314797	human	ensembl	74_37	+1	known	silent	c.393	p.I131	1.000	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_Coatomer_gsu	pfam_Clathrin/coatomer_adapt-like_N,pfam_Coatomer_gsu_app_Ig-like-sub,superfamily_ARM-type_fold,superfamily_Coatomer/clathrin_app_Ig-like,superfamily_Coatomer/calthrin_app_sub_C,pirsf_Coatomer_gsu	-	no_errors	COPG1	HGNC	ENSG00000181789				50	0	0	18	17	48.5714
IFT122	0	genome.wustl.edu	37	3	129185743	129185743	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	3	129185743	129185743	A	G	SNP	IFT122	ENST00000296266	human	ensembl	74_37	+1	known	missense	c.727	p.S243G	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	IFT122	HGNC	ENSG00000163913				98	0	0	104	10	8.77193
SLCO2A1	0	genome.wustl.edu	37	3	133664053	133664053	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	3	133664053	133664053	C	T	SNP	SLCO2A1	ENST00000481359	human	ensembl	74_37	-1	known	missense	c.1157	p.R386H	0.938	NULL	pfam_OA_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	-	no_errors	SLCO2A1	HGNC	ENSG00000174640				301	0	0	253	49	16.2252
ZFYVE20	0	genome.wustl.edu	37	3	15116004	15116004	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	3	15116004	15116004	C	T	SNP	ZFYVE20	ENST00000253699	human	ensembl	74_37	-1	known	missense	c.1640	p.R547Q	0.010	NULL	pfam_Rbsn,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel,pfscan_Znf_C2H2	-	no_errors	ZFYVE20	HGNC	ENSG00000131381				80	0	0	94	8	7.84314
PLCH1	0	genome.wustl.edu	37	3	155200068	155200068	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	3	155200068	155200068	C	T	SNP	PLCH1	ENST00000340059	human	ensembl	74_37	-1	known	silent	c.3771	p.E1257	0.005	NULL	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_Pleckstrin_homology,smart_EF_hand_dom,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,pfscan_EF_hand_dom,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCH1	HGNC	ENSG00000114805				132	0	0	129	8	5.83942
GMPS	0	genome.wustl.edu	37	3	155633942	155633942	+	Silent	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	3	155633942	155633942	T	C	SNP	GMPS	ENST00000496455	human	ensembl	74_37	+1	known	silent	c.1173	p.H391	0.995	NULL	pfam_GATASE,pfam_GMP_synth_C,pfam_Peptidase_C26,pfam_NAD/GMP_synthase,pfam_QueC,pfam_Asn_synthase,pfam_tRNA-specific_2-thiouridylase,tigrfam_GMP_synth_N	-	no_errors	GMPS	HGNC	ENSG00000163655				134	0	0	82	19	18.8119
MLF1	0	genome.wustl.edu	37	3	158315874	158315874	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	3	158315874	158315874	A	C	SNP	MLF1	ENST00000392822	human	ensembl	74_37	+1	known	missense	c.378	p.Q126H	0.011	pfam_Myeloid_leukemia_factor	pfam_Myeloid_leukemia_factor	-	no_errors	MLF1	HGNC	ENSG00000178053				102	0	0	54	17	23.9437
WDR49	0	genome.wustl.edu	37	3	167277851	167277851	+	Splice_Site	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	3	167277851	167277851	C	T	SNP	WDR49	ENST00000308378	human	ensembl	74_37	-1	known	splice_site	c.651+1	e4+1	1.000	-	-	-	no_errors	WDR49	HGNC	ENSG00000174776				208	0	0	151	14	8.48485
SAMD7	0	genome.wustl.edu	37	3	169642884	169642884	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	3	169642884	169642884	G	A	SNP	SAMD7	ENST00000335556	human	ensembl	74_37	+1	known	missense	c.250	p.A84T	0.998	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	SAMD7	HGNC	ENSG00000187033				61	0	0	28	9	24.3243
EIF4G1	0	genome.wustl.edu	37	3	184043127	184043127	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	3	184043127	184043127	G	A	SNP	EIF4G1	ENST00000352767	human	ensembl	74_37	+1	known	missense	c.2948	p.R983H	1.000	pfam_MIF4G-like_typ-3,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3	pfam_MIF4G-like_typ-3,pfam_Initiation_fac_eIF4g_MI,pfam_W2_domain,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3,smart_Initiation_fac_eIF4g_MI,smart_W2_domain	-	no_errors	EIF4G1	HGNC	ENSG00000114867				105	0	0	94	32	25.3968
CLCN2	0	genome.wustl.edu	37	3	184075996	184075996	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	3	184075996	184075996	G	A	SNP	CLCN2	ENST00000265593	human	ensembl	74_37	-1	known	missense	c.455	p.T152I	1.000	pfam_Cl-channel_volt-gated,superfamily_Cl-channel_core	pfam_Cl-channel_volt-gated,pfam_CBS_dom,superfamily_Cl-channel_core,prints_Cl-channel_volt-gated,prints_Cl-channel-2	-	no_errors	CLCN2	HGNC	ENSG00000114859				91	0	0	119	7	5.55556
MASP1	0	genome.wustl.edu	37	3	186953745	186953745	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	3	186953745	186953745	C	T	SNP	MASP1	ENST00000296280	human	ensembl	74_37	-1	known	silent	c.1914	p.S638	0.000	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,pfam_CUB_dom,pfam_Sushi_SCR_CCP,pfam_EGF-like_Ca-bd_dom,superfamily_Trypsin-like_Pept_dom,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_EGF-like_Ca-bd_dom,smart_Sushi_SCR_CCP,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP,pfscan_Peptidase_S1	-	no_errors	MASP1	HGNC	ENSG00000127241				77	0	0	90	5	5.26316
LSG1	0	genome.wustl.edu	37	3	194373625	194373625	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	3	194373625	194373625	A	G	SNP	LSG1	ENST00000265245	human	ensembl	74_37	-1	known	missense	c.1006	p.W336R	0.000	superfamily_P-loop_NTPase	pfam_GTP_binding_domain,superfamily_P-loop_NTPase,prints_GTP_binding_domain	-	no_errors	LSG1	HGNC	ENSG00000041802				253	0	0	176	59	25.1064
MUC4	0	genome.wustl.edu	37	3	195492283	195492283	+	Silent	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	3	195492283	195492283	T	C	SNP	MUC4	ENST00000463781	human	ensembl	74_37	-1	known	silent	c.13656	p.E4552	0.000	smart_Nidogen_extracell_dom	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EG-like_dom,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113				61	0	0	39	13	25
FBXO45	0	genome.wustl.edu	37	3	196304666	196304666	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	3	196304666	196304666	G	A	SNP	FBXO45	ENST00000311630	human	ensembl	74_37	+1	known	missense	c.661	p.A221T	1.000	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_F-box_dom,superfamily_ConA-like_lec_gl_sf,superfamily_F-box_dom,smart_F-box_dom,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_F-box_dom	-	no_errors	FBXO45	HGNC	ENSG00000174013				32	0	0	22	11	33.3333
DLG1	0	genome.wustl.edu	37	3	196792610	196792610	+	Silent	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	3	196792610	196792610	T	C	SNP	DLG1	ENST00000346964	human	ensembl	74_37	-1	known	silent	c.2268	p.E756	1.000	pfam_GK/Ca_channel_bsu,superfamily_P-loop_NTPase,superfamily_SH3_domain,smart_GK/Ca_channel_bsu,pirsf_M-assoc_guanylate_kinase,pfscan_Guanylate_kin-like	pfam_GK/Ca_channel_bsu,pfam_PDZ,pfam_MAGUK_PEST_N,pfam_L27_1,pfam_PDZ_assoc,pfam_SH3_2,pfam_SH3_domain,superfamily_P-loop_NTPase,superfamily_SH3_domain,superfamily_PDZ,smart_L27,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pirsf_M-assoc_guanylate_kinase,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like	-	no_errors	DLG1	HGNC	ENSG00000075711				97	0	0	68	4	5.55556
RBMS3	0	genome.wustl.edu	37	3	30029683	30029683	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	3	30029683	30029683	C	T	SNP	RBMS3	ENST00000383767	human	ensembl	74_37	+1	known	missense	c.1148	p.T383M	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,prints_Hud_Sxl_RNA	-	no_errors	RBMS3	HGNC	ENSG00000144642				95	0	0	70	22	23.913
CLASP2	0	genome.wustl.edu	37	3	33644481	33644481	+	Silent	SNP	A	A	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	3	33644481	33644481	A	G	SNP	CLASP2	ENST00000399362	human	ensembl	74_37	-1	known	silent	c.1887	p.G629	0.354	superfamily_ARM-type_fold	pfam_CLASP_N_dom,pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	CLASP2	HGNC	ENSG00000163539				24	0	0	25	2	7.40741
EPM2AIP1	0	genome.wustl.edu	37	3	37033859	37033859	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	3	37033859	37033859	C	T	SNP	EPM2AIP1	ENST00000322716	human	ensembl	74_37	-1	known	missense	c.710	p.S237N	0.823	NULL	NULL	-	no_errors	EPM2AIP1	HGNC	ENSG00000178567				202	0	0	169	12	6.62983
SCN10A	0	genome.wustl.edu	37	3	38793834	38793834	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	3	38793834	38793834	C	A	SNP	SCN10A	ENST00000449082	human	ensembl	74_37	-1	known	missense	c.1631	p.G544V	0.001	NULL	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN10A	HGNC	ENSG00000185313				93	0	0	96	9	8.57143
ZNF619	0	genome.wustl.edu	37	3	40529635	40529635	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	3	40529635	40529635	A	T	SNP	ZNF619	ENST00000447116	human	ensembl	74_37	+1	known	missense	c.1754	p.N585I	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF619	HGNC	ENSG00000177873				162	0	0	134	26	16.25
CTNNB1	0	genome.wustl.edu	37	3	41265566	41265566	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	3	41265566	41265566	A	G	SNP	CTNNB1	ENST00000349496	human	ensembl	74_37	+1	known	missense	c.7	p.T3A	1.000	NULL	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo,prints_Beta-catenin	-	no_errors	CTNNB1	HGNC	ENSG00000168036				132	0	0	89	24	21.2389
VIPR1	0	genome.wustl.edu	37	3	42568962	42568962	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	3	42568962	42568962	C	T	SNP	VIPR1	ENST00000325123	human	ensembl	74_37	+1	known	silent	c.477	p.V159	0.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_VIP_rcpt_1,prints_GPCR_2_secretin-like,prints_GPCR_2_VIP_rcpt	-	no_errors	VIPR1	HGNC	ENSG00000114812				59	0	0	52	15	22.3881
CCR2	0	genome.wustl.edu	37	3	46399125	46399125	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	3	46399125	46399125	A	T	SNP	CCR2	ENST00000292301	human	ensembl	74_37	+1	known	missense	c.107	p.D36V	0.000	prints_Chemokine_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Chemokine_rcpt,prints_Chemokine_CCR2	-	no_errors	CCR2	HGNC	ENSG00000121807				176	0	0	150	40	21.0526
SETD2	0	genome.wustl.edu	37	3	47147551	47147551	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	3	47147551	47147551	C	T	SNP	SETD2	ENST00000409792	human	ensembl	74_37	-1	known	missense	c.4775	p.R1592Q	1.000	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	pfam_SRI,pfam_SET_dom,pfam_WW_dom,superfamily_WW_dom,superfamily_Ferritin-like_SF,smart_AWS,smart_SET_dom,smart_Post-SET_dom,smart_WW_dom,pfscan_AWS,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_WW_dom	-	no_errors	SETD2	HGNC	ENSG00000181555				106	0	0	63	19	23.1707
PTPN23	0	genome.wustl.edu	37	3	47449946	47449946	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	3	47449946	47449946	C	T	SNP	PTPN23	ENST00000265562	human	ensembl	74_37	+1	known	silent	c.1296	p.P432	0.226	NULL	pfam_BRO1_dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_BRO1_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN23	HGNC	ENSG00000076201				54	0	0	56	11	16.4179
PLXNB1	0	genome.wustl.edu	37	3	48454291	48454291	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	3	48454291	48454291	C	T	SNP	PLXNB1	ENST00000296440	human	ensembl	74_37	-1	known	missense	c.4714	p.A1572T	1.000	pfam_Plexin_cytoplasmic_RasGAP_dom	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT,pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNB1	HGNC	ENSG00000164050				83	0	0	61	10	14.0845
COL7A1	0	genome.wustl.edu	37	3	48612948	48612948	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	3	48612948	48612948	G	A	SNP	COL7A1	ENST00000328333	human	ensembl	74_37	-1	known	missense	c.6004	p.R2002C	0.848	pfam_Collagen	pfam_Collagen,pfam_Fibronectin_type3,pfam_VWF_A,pfam_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,superfamily_Prot_inh_Kunz-m,smart_VWF_A,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL7A1	HGNC	ENSG00000114270				36	0	0	44	10	18.5185
COL7A1	0	genome.wustl.edu	37	3	48628240	48628240	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	3	48628240	48628240	C	T	SNP	COL7A1	ENST00000328333	human	ensembl	74_37	-1	known	missense	c.1646	p.R549Q	0.998	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Collagen,pfam_Fibronectin_type3,pfam_VWF_A,pfam_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,superfamily_Prot_inh_Kunz-m,smart_VWF_A,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL7A1	HGNC	ENSG00000114270				57	0	0	65	15	18.75
AMIGO3	0	genome.wustl.edu	37	3	49755668	49755668	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	3	49755668	49755668	G	A	SNP	AMIGO3	ENST00000320431	human	ensembl	74_37	-1	known	missense	c.1231	p.R411C	0.753	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	AMIGO3	HGNC	ENSG00000176020				65	0	0	61	22	26.506
DNAH1	0	genome.wustl.edu	37	3	52395698	52395698	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	3	52395698	52395698	C	T	SNP	DNAH1	ENST00000420323	human	ensembl	74_37	+1	known	silent	c.4896	p.F1632	0.978	superfamily_P-loop_NTPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase	-	no_errors	DNAH1	HGNC	ENSG00000114841				18	0	0	12	5	29.4118
ITIH3	0	genome.wustl.edu	37	3	52841006	52841006	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	3	52841006	52841006	G	A	SNP	ITIH3	ENST00000449956	human	ensembl	74_37	+1	known	missense	c.2146	p.A716T	0.112	pfam_ITI_HC_C	pfam_ITI_HC_C,pfam_VIT,pfam_VWF_A,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	ITIH3	HGNC	ENSG00000162267				14	0	0	11	4	26.6667
ITIH4	0	genome.wustl.edu	37	3	52853813	52853813	+	Silent	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	3	52853813	52853813	G	A	SNP	ITIH4	ENST00000485816	human	ensembl	74_37	-1	novel	silent	c.1923	p.H641	0.000	NULL	pfam_VIT,pfam_ITI_HC_C,pfam_VWF_A,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	ITIH4	HGNC	ENSG00000055955				177	0	0	147	33	18.3333
CHDH	0	genome.wustl.edu	37	3	53857838	53857838	+	Silent	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	3	53857838	53857838	G	A	SNP	CHDH	ENST00000315251	human	ensembl	74_37	-1	known	silent	c.198	p.R66	0.000	pfam_GMC_OxRdtase_N,pirsf_GMC_OxRdtase	pfam_GMC_OxRdtase_N,pfam_GMC_OxRtase_C,pirsf_GMC_OxRdtase	-	no_errors	CHDH	HGNC	ENSG00000016391				16	0	0	11	3	21.4286
ACTR8	0	genome.wustl.edu	37	3	53911269	53911269	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	3	53911269	53911269	T	C	SNP	ACTR8	ENST00000335754	human	ensembl	74_37	-1	known	missense	c.656	p.Y219C	0.999	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,smart_Actin-related	-	no_errors	ACTR8	HGNC	ENSG00000113812				119	0	0	51	24	32
ABHD6	0	genome.wustl.edu	37	3	58279408	58279408	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	3	58279408	58279408	G	A	SNP	ABHD6	ENST00000295962	human	ensembl	74_37	+1	known	missense	c.930	p.M310I	1.000	pfam_AB_hydrolase_1,pfam_Ndr,prints_Epox_hydrolase-like	pfam_AB_hydrolase_1,pfam_Ndr,prints_AB_hydrolase_1,prints_Epox_hydrolase-like	-	no_errors	ABHD6	HGNC	ENSG00000163686				82	0	0	76	15	16.4835
ADAMTS9	0	genome.wustl.edu	37	3	64619404	64619404	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	3	64619404	64619404	T	C	SNP	ADAMTS9	ENST00000498707	human	ensembl	74_37	-1	known	missense	c.2008	p.N670D	0.052	NULL	pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS9	HGNC	ENSG00000163638				289	0	0	247	42	14.5329
FAM19A4	0	genome.wustl.edu	37	3	68788325	68788325	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	3	68788325	68788325	C	G	SNP	FAM19A4	ENST00000295569	human	ensembl	74_37	-1	known	missense	c.312	p.W104C	1.000	pfam_Chemokine-like_FAM19A2	pfam_Chemokine-like_FAM19A2	-	no_errors	FAM19A4	HGNC	ENSG00000163377				124	0	0	68	19	21.8391
EOGT	0	genome.wustl.edu	37	3	69027566	69027566	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	3	69027566	69027566	C	T	SNP	EOGT	ENST00000383701	human	ensembl	74_37	-1	known	missense	c.1355	p.R452H	1.000	NULL	pfam_Glycosyltransferase_AER61	-	no_errors	EOGT	HGNC	ENSG00000163378				103	0	0	86	5	5.49451
ROBO2	0	genome.wustl.edu	37	3	77147272	77147272	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	3	77147272	77147272	C	T	SNP	ROBO2	ENST00000461745	human	ensembl	74_37	+1	known	missense	c.169	p.R57W	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	ROBO2	HGNC	ENSG00000185008				54	0	0	35	17	32.6923
HTR1F	0	genome.wustl.edu	37	3	88040785	88040785	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	3	88040785	88040785	G	T	SNP	HTR1F	ENST00000319595	human	ensembl	74_37	+1	known	nonsense	c.886	p.G296*	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,prints_5HT1F_rcpt,prints_GPCR_Rhodpsn,prints_5HT_rcpt,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	HTR1F	HGNC	ENSG00000179097				57	0	0	43	4	8.51064
SRGAP3	0	genome.wustl.edu	37	3	9027355	9027355	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	3	9027355	9027355	C	T	SNP	SRGAP3	ENST00000383836	human	ensembl	74_37	-1	known	missense	c.3148	p.A1050T	0.994	NULL	pfam_RhoGAP_dom,pfam_FCH_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,smart_FCH_dom,smart_RhoGAP_dom,smart_SH3_domain,pfscan_FCH_dom,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	SRGAP3	HGNC	ENSG00000196220				30	0	0	38	18	32.1429
ARL13B	0	genome.wustl.edu	37	3	93768344	93768344	+	Silent	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	3	93768344	93768344	G	A	SNP	ARL13B	ENST00000394222	human	ensembl	74_37	+1	known	silent	c.1119	p.T373	0.759	NULL	pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,pfam_SRP_receptor_beta_su,superfamily_P-loop_NTPase,smart_Small_GTPase_ARF,smart_Small_GTPase_SAR1,prints_Small_GTPase_ARF/SAR,tigrfam_Small_GTP-bd_dom	-	no_errors	ARL13B	HGNC	ENSG00000169379				109	0	0	72	18	20
MTMR14	0	genome.wustl.edu	37	3	9714373	9714373	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	3	9714373	9714373	A	G	SNP	MTMR14	ENST00000296003	human	ensembl	74_37	+1	known	missense	c.682	p.T228A	1.000	NULL	NULL	-	no_errors	MTMR14	HGNC	ENSG00000163719				117	0	0	73	28	27.7228
MANBA	0	genome.wustl.edu	37	4	103557139	103557139	+	Silent	SNP	A	A	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	4	103557139	103557139	A	G	SNP	MANBA	ENST00000226578	human	ensembl	74_37	-1	known	silent	c.2040	p.L680	0.973	superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_2_N,pfam_Glyco_hydro_2_TIM,superfamily_Glycoside_hydrolase_SF,superfamily_Galactose-bd-like,superfamily_Glyco_hydro_2_Ig-like	-	no_errors	MANBA	HGNC	ENSG00000109323				59	0	0	42	9	17.6471
COL25A1	0	genome.wustl.edu	37	4	109740459	109740459	+	Silent	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	4	109740459	109740459	T	C	SNP	COL25A1	ENST00000399132	human	ensembl	74_37	-1	known	silent	c.1872	p.K624	1.000	pfam_Collagen	pfam_Collagen	-	no_errors	COL25A1	HGNC	ENSG00000188517				71	0	0	79	12	13.1868
AP1AR	0	genome.wustl.edu	37	4	113189433	113189433	+	Silent	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	4	113189433	113189433	G	A	SNP	AP1AR	ENST00000274000	human	ensembl	74_37	+1	known	silent	c.777	p.E259	1.000	NULL	NULL	-	no_errors	AP1AR	HGNC	ENSG00000138660				101	0	0	53	8	13.1148
HS3ST1	0	genome.wustl.edu	37	4	11401356	11401356	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	4	11401356	11401356	A	G	SNP	HS3ST1	ENST00000002596	human	ensembl	74_37	-1	known	missense	c.274	p.W92R	1.000	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	HS3ST1	HGNC	ENSG00000002587				86	0	0	113	6	5.04202
KIAA1109	0	genome.wustl.edu	37	4	123120577	123120577	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	4	123120577	123120577	G	A	SNP	KIAA1109	ENST00000264501	human	ensembl	74_37	+1	known	missense	c.1352	p.R451Q	1.000	NULL	pfam_Fragile_site-assoc_C	-	no_errors	KIAA1109	HGNC	ENSG00000138688				118	0	0	67	4	5.6338
FAT4	0	genome.wustl.edu	37	4	126238469	126238469	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	4	126238469	126238469	G	T	SNP	FAT4	ENST00000394329	human	ensembl	74_37	+1	known	missense	c.903	p.E301D	0.155	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159				35	0	0	50	10	16.6667
FAT4	0	genome.wustl.edu	37	4	126320048	126320048	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	4	126320048	126320048	T	C	SNP	FAT4	ENST00000394329	human	ensembl	74_37	+1	known	missense	c.5285	p.L1762P	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159				159	0	0	103	26	20.155
FAT4	0	genome.wustl.edu	37	4	126329902	126329902	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	4	126329902	126329902	C	A	SNP	FAT4	ENST00000394329	human	ensembl	74_37	+1	known	missense	c.5873	p.P1958H	1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159				218	0	0	101	15	12.931
FAT4	0	genome.wustl.edu	37	4	126371861	126371861	+	Silent	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	4	126371861	126371861	G	A	SNP	FAT4	ENST00000394329	human	ensembl	74_37	+1	known	silent	c.9690	p.A3230	0.006	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159				91	0	0	51	12	19.0476
HSPA4L	0	genome.wustl.edu	37	4	128748490	128748490	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	4	128748490	128748490	A	G	SNP	HSPA4L	ENST00000439123	human	ensembl	74_37	+1	known	missense	c.2170	p.M724V	1.000	pfam_Hsp_70_fam	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPA4L	HGNC	ENSG00000164070				129	0	0	71	5	6.57895
MAEA	0	genome.wustl.edu	37	4	1332301	1332301	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	4	1332301	1332301	G	A	SNP	MAEA	ENST00000303400	human	ensembl	74_37	+1	known	missense	c.991	p.A331T	1.000	NULL	smart_LisH_dimerisation,smart_CTLH_C,smart_CRA_dom,pfscan_LisH_dimerisation,pfscan_CTLH_C	-	no_errors	MAEA	HGNC	ENSG00000090316				38	0	0	51	5	8.92857
HHIP	0	genome.wustl.edu	37	4	145629358	145629358	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	4	145629358	145629358	C	G	SNP	HHIP	ENST00000296575	human	ensembl	74_37	+1	known	missense	c.1196	p.T399R	1.000	superfamily_Quinoprot_gluc/sorb_DH	pfam_Folate_rcpt-like,superfamily_Quinoprot_gluc/sorb_DH,smart_EG-like_dom,pfscan_EG-like_dom	-	no_errors	HHIP	HGNC	ENSG00000164161				70	0	0	57	12	17.3913
NR3C2	0	genome.wustl.edu	37	4	149035413	149035413	+	Splice_Site	SNP	C	C	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	4	149035413	149035413	C	A	SNP	NR3C2	ENST00000355292	human	ensembl	74_37	-1	known	splice_site	c.2654-1	e7-1	1.000	-	-	-	no_errors	NR3C2	HGNC	ENSG00000151623				41	0	0	28	3	9.67742
C1QTNF7	0	genome.wustl.edu	37	4	15437604	15437604	+	Silent	SNP	A	A	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	4	15437604	15437604	A	G	SNP	C1QTNF7	ENST00000429690	human	ensembl	74_37	+1	known	silent	c.237	p.A79	1.000	pfam_Collagen	pfam_C1q,pfam_Collagen,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	C1QTNF7	HGNC	ENSG00000163145				58	0	0	40	9	18.3673
TKTL2	0	genome.wustl.edu	37	4	164394017	164394017	+	Silent	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	4	164394017	164394017	T	C	SNP	TKTL2	ENST00000280605	human	ensembl	74_37	-1	known	silent	c.870	p.P290	0.000	NULL	pfam_Transketolase_N,pfam_Transketolase-like_Pyr-bd,pfam_Transketolase_C,pfam_DH_E1,superfamily_Transketo_C/Pyr-ferredox_oxred,smart_Transketolase-like_Pyr-bd	-	no_errors	TKTL2	HGNC	ENSG00000151005				229	1	0.434783	155	42	21.3198
ADAM29	0	genome.wustl.edu	37	4	175898280	175898280	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	4	175898280	175898280	G	A	SNP	ADAM29	ENST00000359240	human	ensembl	74_37	+1	known	missense	c.1604	p.G535D	0.965	pfam_ADAM_Cys-rich,smart_ADAM_Cys-rich	pfam_Peptidase_M12B,pfam_ADAM_Cys-rich,pfam_Peptidase_M12B_N,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM29	HGNC	ENSG00000168594				90	0	0	72	17	19.1011
TENM3	0	genome.wustl.edu	37	4	183658156	183658156	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	4	183658156	183658156	T	G	SNP	TENM3	ENST00000406950	human	ensembl	74_37	+1	known	missense	c.3163	p.L1055V	1.000	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,superfamily_Cyt_c-like_dom,smart_EG-like_dom,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	TENM3	HGNC	ENSG00000218336				210	0	0	130	38	22.619
MTNR1A	0	genome.wustl.edu	37	4	187455686	187455686	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	4	187455686	187455686	C	T	SNP	MTNR1A	ENST00000307161	human	ensembl	74_37	-1	known	silent	c.210	p.A70	0.015	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Melatonin_rcpt,prints_GPCR_Rhodpsn,prints_Mel_1A_rcpt,prints_NPY_rcpt,prints_Mel_rcpt_1C	-	no_errors	MTNR1A	HGNC	ENSG00000168412				72	0	0	61	8	11.5942
SLIT2	0	genome.wustl.edu	37	4	20599972	20599972	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	4	20599972	20599972	C	T	SNP	SLIT2	ENST00000504154	human	ensembl	74_37	+1	known	missense	c.3646	p.R1216C	0.736	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_EG-like_dom,pfam_Laminin_G,pfam_Leu-rich_rpt,pfam_LRR-contain_N,pfam_Cys-rich_flank_reg_C,superfamily_ConA-like_lec_gl_sf,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Fol_N,smart_Laminin_G,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	SLIT2	HGNC	ENSG00000145147				163	0	0	136	20	12.8205
TBC1D1	0	genome.wustl.edu	37	4	38016279	38016279	+	Silent	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	4	38016279	38016279	G	A	SNP	TBC1D1	ENST00000261439	human	ensembl	74_37	+1	known	silent	c.567	p.P189	0.245	smart_PTB/PI_dom	pfam_Rab-GTPase-TBC_dom,pfam_DUF3350,pfam_PTB/PI_dom,superfamily_Rab-GTPase-TBC_dom,smart_PTB/PI_dom,smart_Rab-GTPase-TBC_dom,pfscan_PTB/PI_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D1	HGNC	ENSG00000065882				155	0	0	135	38	21.9653
KLF3	0	genome.wustl.edu	37	4	38698768	38698768	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	4	38698768	38698768	A	G	SNP	KLF3	ENST00000261438	human	ensembl	74_37	+1	known	missense	c.922	p.T308A	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	KLF3	HGNC	ENSG00000109787				140	0	0	139	8	5.44218
GRXCR1	0	genome.wustl.edu	37	4	43032469	43032469	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	4	43032469	43032469	G	A	SNP	GRXCR1	ENST00000399770	human	ensembl	74_37	+1	known	missense	c.785	p.R262Q	1.000	superfamily_HSP_DnaJ_Cys-rich_dom	pfam_Glutaredoxin,superfamily_Thioredoxin-like_fold,superfamily_HSP_DnaJ_Cys-rich_dom	-	no_errors	GRXCR1	HGNC	ENSG00000215203				194	1	0.512821	114	36	24
EVC2	0	genome.wustl.edu	37	4	5664972	5664972	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	4	5664972	5664972	A	C	SNP	EVC2	ENST00000344408	human	ensembl	74_37	-1	known	missense	c.1007	p.V336G	0.034	pfam_Limbin	pfam_Limbin	-	no_errors	EVC2	HGNC	ENSG00000173040				137	0	0	82	19	18.8119
TMPRSS11D	0	genome.wustl.edu	37	4	68691524	68691524	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	4	68691524	68691524	G	A	SNP	TMPRSS11D	ENST00000283916	human	ensembl	74_37	-1	known	missense	c.1021	p.H341Y	0.000	pirsf_Pept_S1A_HAT/DESC1,pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pirsf_Pept_S1A_HAT/DESC1,pfam_Peptidase_S1,pfam_SEA_dom,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_SEA_dom,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_SEA_dom,pfscan_Peptidase_S1	-	no_errors	TMPRSS11D	HGNC	ENSG00000153802				116	0	0	51	15	22.7273
TBC1D14	0	genome.wustl.edu	37	4	6925517	6925517	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	4	6925517	6925517	G	A	SNP	TBC1D14	ENST00000409757	human	ensembl	74_37	+1	known	missense	c.401	p.G134D	1.000	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D14	HGNC	ENSG00000132405				166	0	0	149	52	25.8706
UGT2A3	0	genome.wustl.edu	37	4	69795654	69795654	+	Silent	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	4	69795654	69795654	G	A	SNP	UGT2A3	ENST00000251566	human	ensembl	74_37	-1	known	silent	c.1461	p.Y487	0.942	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT2A3	HGNC	ENSG00000135220				132	0	0	102	18	15
CCDC158	0	genome.wustl.edu	37	4	77283362	77283362	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	4	77283362	77283362	C	T	SNP	CCDC158	ENST00000388914	human	ensembl	74_37	-1	known	missense	c.1937	p.R646H	0.978	NULL	superfamily_Prefoldin	-	no_errors	CCDC158	HGNC	ENSG00000163749				156	0	0	96	29	23.2
PRKG2	0	genome.wustl.edu	37	4	82063969	82063969	+	Silent	SNP	A	A	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	4	82063969	82063969	A	G	SNP	PRKG2	ENST00000264399	human	ensembl	74_37	-1	known	silent	c.1386	p.G462	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_cGMP-dependent_protein_kinase,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_cNMP-bd_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_cGMP-dependent_protein_kinase,pfscan_cNMP-bd_dom,pfscan_Prot_kinase_dom,prints_cGMP_dep_kinase,prints_cAMP/cGMP_kin	-	no_errors	PRKG2	HGNC	ENSG00000138669				324	0	0	212	56	20.8955
CDS1	0	genome.wustl.edu	37	4	85525440	85525440	+	Silent	SNP	A	A	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	4	85525440	85525440	A	C	SNP	CDS1	ENST00000295887	human	ensembl	74_37	+1	known	silent	c.162	p.T54	0.402	pirsf_PC_Trfase_euk	pfam_PC_trans,pirsf_PC_Trfase_euk	-	no_errors	CDS1	HGNC	ENSG00000163624				85	0	0	55	12	17.9104
WDFY3	0	genome.wustl.edu	37	4	85636503	85636503	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	4	85636503	85636503	G	A	SNP	WDFY3	ENST00000295888	human	ensembl	74_37	-1	known	missense	c.7909	p.R2637W	1.000	NULL	pfam_BEACH_dom,pfam_Znf_FYVE,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_Znf_FYVE_PHD,superfamily_ConA-like_lec_gl_sf,superfamily_Cyclin-like,superfamily_ARM-type_fold,smart_WD40_repeat,smart_Znf_FYVE,pfscan_BEACH_dom,pfscan_Znf_FYVE-rel,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDFY3	HGNC	ENSG00000163625				151	0	0	74	24	24.4898
AFF1	0	genome.wustl.edu	37	4	88053502	88053502	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	4	88053502	88053502	A	G	SNP	AFF1	ENST00000395146	human	ensembl	74_37	+1	known	missense	c.3253	p.N1085D	0.752	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF1	HGNC	ENSG00000172493				115	0	0	52	13	20
SNCA	0	genome.wustl.edu	37	4	90743423	90743423	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	4	90743423	90743423	A	C	SNP	SNCA	ENST00000336904	human	ensembl	74_37	-1	known	missense	c.280	p.F94V	1.000	pfam_Synuclein,prints_Synuclein,prints_Synuclein_alpha,prints_Synuclein_gamma	pfam_Synuclein,prints_Synuclein,prints_Synuclein_alpha,prints_Synuclein_gamma	-	no_errors	SNCA	HGNC	ENSG00000145335				105	0	0	82	5	5.74713
UNC5C	0	genome.wustl.edu	37	4	96140152	96140152	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	4	96140152	96140152	G	A	SNP	UNC5C	ENST00000453304	human	ensembl	74_37	-1	known	missense	c.1613	p.S538L	0.998	pfam_ZU5,smart_ZU5,pfscan_ZU5	pfam_ZU5,pfam_Death_domain,pfam_Ig_I-set,pfam_Thrombospondin_1_rpt,superfamily_DEATH-like_dom,superfamily_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,smart_Thrombospondin_1_rpt,smart_ZU5,smart_Death_domain,pfscan_Thrombospondin_1_rpt,pfscan_ZU5,pfscan_Ig-like_dom	-	no_errors	UNC5C	HGNC	ENSG00000182168				125	0	0	72	19	20.8791
DRD5	0	genome.wustl.edu	37	4	9784677	9784677	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	4	9784677	9784677	G	A	SNP	DRD5	ENST00000304374	human	ensembl	74_37	+1	known	missense	c.1024	p.D342N	0.985	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Dopamine_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Dopamine_D5_rcpt,prints_Dopamine_rcpt	-	no_errors	DRD5	HGNC	ENSG00000169676				140	0	0	116	31	21.0884
SLC12A7	0	genome.wustl.edu	37	5	1052501	1052501	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	5	1052501	1052501	G	A	SNP	SLC12A7	ENST00000264930	human	ensembl	74_37	-1	known	missense	c.3226	p.R1076W	1.000	tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease/SLC12A_dom,prints_KCL_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A7	HGNC	ENSG00000113504				149	0	0	119	31	20.6667
SLC12A7	0	genome.wustl.edu	37	5	1081737	1081737	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	5	1081737	1081737	C	T	SNP	SLC12A7	ENST00000264930	human	ensembl	74_37	-1	known	missense	c.1252	p.A418T	0.996	tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease/SLC12A_dom,prints_KCL_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A7	HGNC	ENSG00000113504				76	0	0	85	15	15
ZRSR1	0	genome.wustl.edu	37	5	112227455	112227455	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	5	112227455	112227455	T	G	SNP	ZRSR1	ENST00000391338	human	ensembl	74_37	+1	known	missense	c.119	p.L40R	0.215	NULL	pfam_Znf_CCCH,pfam_RRM_dom,smart_Znf_CCCH,smart_RRM_dom_euk,pfscan_RRM_dom,prints_U2_small	-	no_errors	ZRSR1	HGNC	ENSG00000212643				59	0	0	53	20	27.3973
SLC6A19	0	genome.wustl.edu	37	5	1212545	1212545	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	5	1212545	1212545	C	T	SNP	SLC6A19	ENST00000515652	human	ensembl	74_37	+1	known	missense	c.517	p.R173C	0.001	NULL	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	-	no_errors	SLC6A19	HGNC	ENSG00000174358				102	0	0	122	21	14.6853
CDKL3	0	genome.wustl.edu	37	5	133644013	133644013	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	5	133644013	133644013	T	C	SNP	CDKL3	ENST00000265334	human	ensembl	74_37	-1	known	missense	c.1180	p.M394V	0.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDKL3	HGNC	ENSG00000006837				103	0	0	73	4	5.19481
DNAH5	0	genome.wustl.edu	37	5	13700841	13700841	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	5	13700841	13700841	C	T	SNP	DNAH5	ENST00000265104	human	ensembl	74_37	-1	known	missense	c.13631	p.G4544D	1.000	pfam_Dynein_heavy_dom	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139				185	0	0	144	36	20
PCDHA8	0	genome.wustl.edu	37	5	140223021	140223021	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	5	140223021	140223021	C	T	SNP	PCDHA8	ENST00000531613	human	ensembl	74_37	+1	known	silent	c.2115	p.C705	0.907	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA8	HGNC	ENSG00000204962				49	0	0	31	43	58.1081
PCDHA11	0	genome.wustl.edu	37	5	140250465	140250465	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	5	140250465	140250465	G	A	SNP	PCDHA11	ENST00000398640	human	ensembl	74_37	+1	known	missense	c.1777	p.V593M	0.998	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA11	HGNC	ENSG00000249158				139	0	0	145	40	21.6216
PCDHGB3	0	genome.wustl.edu	37	5	140750133	140750133	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	5	140750133	140750133	G	A	SNP	PCDHGB3	ENST00000576222	human	ensembl	74_37	+1	known	missense	c.172	p.V58M	0.000	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB3	HGNC	ENSG00000262209				202	1	0.492611	174	10	5.43478
PCDHGB6	0	genome.wustl.edu	37	5	140789324	140789324	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	5	140789324	140789324	G	A	SNP	PCDHGB6	ENST00000520790	human	ensembl	74_37	+1	known	missense	c.1555	p.A519T	0.998	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB6	HGNC	ENSG00000253305				30	0	0	43	6	12.2449
PCDHGB6	0	genome.wustl.edu	37	5	140789386	140789386	+	Silent	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	5	140789386	140789386	G	A	SNP	PCDHGB6	ENST00000520790	human	ensembl	74_37	+1	known	silent	c.1617	p.S539	0.993	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB6	HGNC	ENSG00000253305				17	0	0	24	6	20
PCDHGA10	0	genome.wustl.edu	37	5	140793850	140793850	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	5	140793850	140793850	G	A	SNP	PCDHGA10	ENST00000398610	human	ensembl	74_37	+1	known	missense	c.1108	p.V370I	0.994	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA10	HGNC	ENSG00000253846				45	0	0	30	10	25
PCDHGC3	0	genome.wustl.edu	37	5	140856242	140856242	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	5	140856242	140856242	C	T	SNP	PCDHGC3	ENST00000308177	human	ensembl	74_37	+1	known	missense	c.559	p.R187W	0.996	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGC3	HGNC	ENSG00000240184				57	0	0	51	20	28.169
LARS	0	genome.wustl.edu	37	5	145552290	145552290	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	5	145552290	145552290	C	T	SNP	LARS	ENST00000394434	human	ensembl	74_37	-1	known	missense	c.173	p.R58H	1.000	pfam_aa-tRNA-synth_Ia,pfam_Methionyl/Leucyl_tRNA_Synth,tigrfam_Leu-tRNA-synth_Ia_arc/euk	pfam_aa-tRNA-synth_Ia,pfam_Methionyl/Leucyl_tRNA_Synth,pfam_V/L/I-tRNA-synth_anticodon-bd,pfam_Cys-tRNA/MSH_ligase,superfamily_tRNAsynth_1a_anticodon-bd,superfamily_Val/Leu/Ile-tRNA-synth_edit,tigrfam_Leu-tRNA-synth_Ia_arc/euk	-	no_errors	LARS	HGNC	ENSG00000133706				59	0	0	18	4	18.1818
ADRB2	0	genome.wustl.edu	37	5	148206748	148206748	+	Silent	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	5	148206748	148206748	G	A	SNP	ADRB2	ENST00000305988	human	ensembl	74_37	+1	known	silent	c.354	p.T118	0.245	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_ADRB2_rcpt,prints_GPCR_Rhodpsn,prints_ADR_fam	-	no_errors	ADRB2	HGNC	ENSG00000169252				147	0	0	93	37	28.4615
FAT2	0	genome.wustl.edu	37	5	150934154	150934154	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	5	150934154	150934154	A	T	SNP	FAT2	ENST00000261800	human	ensembl	74_37	-1	known	missense	c.3714	p.N1238K	0.733	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Laminin_G,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT2	HGNC	ENSG00000086570				164	0	0	124	25	16.7785
CCNJL	0	genome.wustl.edu	37	5	159680577	159680577	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	5	159680577	159680577	C	T	SNP	CCNJL	ENST00000393977	human	ensembl	74_37	-1	known	silent	c.1116	p.G372	0.064	NULL	pfam_Cyclin_C-dom,pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	CCNJL	HGNC	ENSG00000135083				67	0	0	76	5	6.17284
TENM2	0	genome.wustl.edu	37	5	167489118	167489118	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	5	167489118	167489118	C	T	SNP	TENM2	ENST00000518659	human	ensembl	74_37	+1	known	missense	c.1363	p.R455W	0.940	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,superfamily_Quino_amine_DH_bsu,superfamily_ConA-like_lec_gl_sf,superfamily_Cytokine_IL1-like,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	TENM2	HGNC	ENSG00000145934				46	0	0	48	6	11.1111
CREBRF	0	genome.wustl.edu	37	5	172513527	172513527	+	Silent	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	5	172513527	172513527	G	A	SNP	CREBRF	ENST00000540014	human	ensembl	74_37	+1	known	silent	c.33	p.P11	1.000	NULL	NULL	-	no_errors	CREBRF	HGNC	ENSG00000164463				140	1	0.70922	80	22	21.5686
CDHR2	0	genome.wustl.edu	37	5	176018287	176018287	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	5	176018287	176018287	C	A	SNP	CDHR2	ENST00000261944	human	ensembl	74_37	+1	known	missense	c.3616	p.P1206T	0.005	NULL	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDHR2	HGNC	ENSG00000074276				69	0	0	54	16	22.8571
DBN1	0	genome.wustl.edu	37	5	176885640	176885640	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	5	176885640	176885640	C	T	SNP	DBN1	ENST00000292385	human	ensembl	74_37	-1	known	missense	c.1201	p.G401S	0.000	NULL	pfam_Actin-bd_cofilin/tropomyosin,smart_Actin-bd_cofilin/tropomyosin	-	no_errors	DBN1	HGNC	ENSG00000113758				25	0	0	27	3	10
ZNF354A	0	genome.wustl.edu	37	5	178139186	178139186	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	5	178139186	178139186	G	A	SNP	ZNF354A	ENST00000335815	human	ensembl	74_37	-1	known	missense	c.1693	p.R565C	0.342	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF354A	HGNC	ENSG00000169131				128	0	0	75	21	21.875
ADAMTS2	0	genome.wustl.edu	37	5	178540988	178540988	+	Silent	SNP	A	A	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	5	178540988	178540988	A	G	SNP	ADAMTS2	ENST00000251582	human	ensembl	74_37	-1	known	silent	c.3516	p.D1172	0.003	NULL	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Pept_M12B_ADAM-TS2,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS2	HGNC	ENSG00000087116				170	0	0	149	42	21.9895
FLT4	0	genome.wustl.edu	37	5	180055888	180055888	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	5	180055888	180055888	A	G	SNP	FLT4	ENST00000261937	human	ensembl	74_37	-1	known	missense	c.1097	p.F366S	0.998	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_VEGFR3_rcpt	-	no_errors	FLT4	HGNC	ENSG00000037280				48	0	0	42	12	22.2222
PTGER4	0	genome.wustl.edu	37	5	40692308	40692308	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	5	40692308	40692308	G	A	SNP	PTGER4	ENST00000302472	human	ensembl	74_37	+1	known	missense	c.1295	p.R432K	1.000	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Prost_EP4_rcpt,prints_Prostanoid_rcpt,prints_GPCR_Rhodpsn,prints_Prostglndn_DP_rcpt	-	no_errors	PTGER4	HGNC	ENSG00000171522				51	0	0	53	3	5.35714
MIER3	0	genome.wustl.edu	37	5	56219756	56219756	+	Silent	SNP	A	A	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	5	56219756	56219756	A	G	SNP	MIER3	ENST00000381199	human	ensembl	74_37	-1	known	silent	c.1038	p.H346	1.000	NULL	pfam_ELM2_dom,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_ELM2_dom	-	no_errors	MIER3	HGNC	ENSG00000155545				110	0	0	76	18	19.1489
CD180	0	genome.wustl.edu	37	5	66478959	66478959	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	5	66478959	66478959	G	A	SNP	CD180	ENST00000256447	human	ensembl	74_37	-1	known	missense	c.1712	p.T571I	0.884	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	CD180	HGNC	ENSG00000134061				57	0	0	53	7	11.6667
FASTKD3	0	genome.wustl.edu	37	5	7861317	7861317	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	5	7861317	7861317	C	T	SNP	FASTKD3	ENST00000264669	human	ensembl	74_37	-1	known	missense	c.1829	p.G610E	1.000	pfam_RAP,smart_RAP	pfam_FAST_2,pfam_FAST_Leu-rich,pfam_RAP,smart_RAP	-	no_errors	FASTKD3	HGNC	ENSG00000124279				127	0	0	70	6	7.89474
FASTKD3	0	genome.wustl.edu	37	5	7868079	7868079	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	5	7868079	7868079	G	A	SNP	FASTKD3	ENST00000264669	human	ensembl	74_37	-1	known	missense	c.118	p.R40C	0.000	NULL	pfam_FAST_2,pfam_FAST_Leu-rich,pfam_RAP,smart_RAP	-	no_errors	FASTKD3	HGNC	ENSG00000124279				130	0	0	98	25	20.3252
RASA1	0	genome.wustl.edu	37	5	86672770	86672770	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	5	86672770	86672770	G	A	SNP	RASA1	ENST00000274376	human	ensembl	74_37	+1	known	missense	c.2257	p.A753T	1.000	superfamily_Rho_GTPase_activation_prot,smart_RasGAP,pfscan_RasGAP	pfam_SH2,pfam_RasGAP,pfam_Pleckstrin_homology,pfam_SH3_domain,pfam_C2_dom,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_SH2,smart_SH3_domain,smart_Pleckstrin_homology,smart_C2_dom,smart_RasGAP,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_RasGAP,prints_SH2	-	no_errors	RASA1	HGNC	ENSG00000145715				124	0	0	73	5	6.41026
SEMA5A	0	genome.wustl.edu	37	5	9054362	9054362	+	Silent	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	5	9054362	9054362	G	A	SNP	SEMA5A	ENST00000382496	human	ensembl	74_37	-1	known	silent	c.2526	p.G842	0.034	superfamily_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Semap_dom,pfam_Thrombospondin_1_rpt,superfamily_Semap_dom,superfamily_Thrombospondin_1_rpt,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_Thrombospondin_1_rpt,pfscan_Semap_dom,pfscan_Thrombospondin_1_rpt	-	no_errors	SEMA5A	HGNC	ENSG00000112902				48	0	0	36	6	14.2857
ASCC3	0	genome.wustl.edu	37	6	101037585	101037585	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	6	101037585	101037585	C	T	SNP	ASCC3	ENST00000369162	human	ensembl	74_37	-1	known	silent	c.5475	p.K1825	1.000	pfam_Sec63-dom,smart_Sec63-dom	pfam_Sec63-dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_AAA+_ATPase,smart_Helicase_C,smart_Sec63-dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ASCC3	HGNC	ENSG00000112249				189	0	0	87	10	10.3093
ASCC3	0	genome.wustl.edu	37	6	101100601	101100601	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	6	101100601	101100601	C	A	SNP	ASCC3	ENST00000369162	human	ensembl	74_37	-1	known	missense	c.2988	p.E996D	1.000	pfam_Sec63-dom,smart_Sec63-dom	pfam_Sec63-dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_AAA+_ATPase,smart_Helicase_C,smart_Sec63-dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ASCC3	HGNC	ENSG00000112249				44	0	0	20	10	33.3333
FIG4	0	genome.wustl.edu	37	6	110037748	110037748	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	6	110037748	110037748	C	T	SNP	FIG4	ENST00000230124	human	ensembl	74_37	+1	known	missense	c.266	p.A89V	1.000	NULL	pfam_Syja_N,pfscan_Syja_N	-	no_errors	FIG4	HGNC	ENSG00000112367				225	1	0.442478	144	30	17.2414
NEDD9	0	genome.wustl.edu	37	6	11185718	11185718	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	6	11185718	11185718	C	T	SNP	NEDD9	ENST00000379446	human	ensembl	74_37	-1	known	missense	c.2182	p.A728T	1.000	pfam_CAS_DUF3513	pfam_CAS_DUF3513,pfam_Serine_rich,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	NEDD9	HGNC	ENSG00000111859				128	1	0.775194	99	22	18.1818
CEP85L	0	genome.wustl.edu	37	6	118953732	118953732	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	6	118953732	118953732	A	C	SNP	CEP85L	ENST00000368488	human	ensembl	74_37	-1	known	missense	c.125	p.L42W	0.986	NULL	NULL	-	no_errors	CEP85L	HGNC	ENSG00000111860				81	0	0	42	12	22.2222
MAN1A1	0	genome.wustl.edu	37	6	119569513	119569513	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	6	119569513	119569513	G	A	SNP	MAN1A1	ENST00000368468	human	ensembl	74_37	-1	known	nonsense	c.904	p.R302*	1.000	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47,prints_Glyco_hydro_47	-	no_errors	MAN1A1	HGNC	ENSG00000111885				58	0	0	20	8	28.5714
HBS1L	0	genome.wustl.edu	37	6	135318743	135318743	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	6	135318743	135318743	C	T	SNP	HBS1L	ENST00000367837	human	ensembl	74_37	-1	known	silent	c.591	p.P197	0.000	NULL	pfam_HBS1-like_N,pfam_EF_GTP-bd_dom,pfam_Transl_elong_EFTu/EF1A_C,pfam_Transl_elong_EFTu/EF1A_2,superfamily_P-loop_NTPase,superfamily_Transl_elong_EF1A/Init_IF2_C,superfamily_Transl_B-barrel,prints_EF_GTP-bd_dom	-	no_errors	HBS1L	HGNC	ENSG00000112339				163	0	0	110	37	25.1701
MYB	0	genome.wustl.edu	37	6	135507123	135507123	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	6	135507123	135507123	C	T	SNP	MYB	ENST00000341911	human	ensembl	74_37	+1	known	missense	c.106	p.R36C	1.000	pfscan_Myb-like_dom	pfam_C-myb_C,pfam_SANT/Myb,pfam_Tscrpt_reg_Wos2-domain,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	MYB	HGNC	ENSG00000118513				76	0	0	51	17	25
SLC35D3	0	genome.wustl.edu	37	6	137245806	137245806	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	6	137245806	137245806	T	C	SNP	SLC35D3	ENST00000331858	human	ensembl	74_37	+1	known	missense	c.1223	p.I408T	1.000	NULL	pfam_Tpt_PEP_trans_dom	-	no_errors	SLC35D3	HGNC	ENSG00000182747				78	0	0	41	19	31.6667
SYNE1	0	genome.wustl.edu	37	6	152680514	152680514	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	6	152680514	152680514	T	C	SNP	SYNE1	ENST00000265368	human	ensembl	74_37	-1	known	missense	c.10379	p.Y3460C	1.000	superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018				150	0	0	112	6	5.08475
C6orf118	0	genome.wustl.edu	37	6	165715776	165715776	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	6	165715776	165715776	T	G	SNP	C6orf118	ENST00000230301	human	ensembl	74_37	-1	known	missense	c.35	p.K12T	0.000	NULL	superfamily_Ribonuclease/ribotoxin	-	no_errors	C6orf118	HGNC	ENSG00000112539				99	0	0	72	24	25
T	0	genome.wustl.edu	37	6	166580221	166580221	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	6	166580221	166580221	C	T	SNP	T	ENST00000296946	human	ensembl	74_37	-1	known	silent	c.330	p.V110	1.000	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,prints_TF_Brachyury,pfscan_TF_T-box	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,prints_TF_Brachyury,prints_TF_T-box,pfscan_TF_T-box	-	no_errors	T	HGNC	ENSG00000164458				73	0	0	85	6	6.59341
DLL1	0	genome.wustl.edu	37	6	170597536	170597536	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	6	170597536	170597536	G	A	SNP	DLL1	ENST00000366756	human	ensembl	74_37	-1	known	missense	c.461	p.T154M	0.981	NULL	pfam_EG-like_dom,pfam_Notch_ligand_N,pfam_DSL,pfam_EGF_extracell,pfam_EGF-like_Ca-bd_dom,smart_DSL,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_DSL,pfscan_EG-like_dom	-	no_errors	DLL1	HGNC	ENSG00000198719				51	0	0	34	13	27.6596
LRRC16A	0	genome.wustl.edu	37	6	25492198	25492198	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	6	25492198	25492198	G	A	SNP	LRRC16A	ENST00000329474	human	ensembl	74_37	+1	novel	missense	c.1166	p.G389E	1.000	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC16A	HGNC	ENSG00000079691				73	0	0	52	4	7.14286
SLC17A2	0	genome.wustl.edu	37	6	25924033	25924033	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	6	25924033	25924033	C	T	SNP	SLC17A2	ENST00000377850	human	ensembl	74_37	-1	known	missense	c.130	p.A44T	0.999	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC17A2	HGNC	ENSG00000112337				150	0	0	129	7	5.14706
HIST1H3E	0	genome.wustl.edu	37	6	26225388	26225388	+	Silent	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	6	26225388	26225388	G	A	SNP	HIST1H3E	ENST00000360408	human	ensembl	74_37	+1	known	silent	c.6	p.A2	0.094	superfamily_Histone-fold	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	-	no_errors	HIST1H3E	HGNC	ENSG00000196966				128	0	0	120	15	11.1111
BTN3A1	0	genome.wustl.edu	37	6	26413715	26413715	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	6	26413715	26413715	A	C	SNP	BTN3A1	ENST00000289361	human	ensembl	74_37	+1	known	missense	c.1337	p.E446A	0.000	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Ig_V-set,pfam_CD80_C2-set,superfamily_ConA-like_lec_gl_sf,smart_Ig_sub,smart_Ig_V-set_subgr,smart_PRY,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Ig-like_dom	-	no_errors	BTN3A1	HGNC	ENSG00000026950				162	0	0	116	31	21.0884
HIST1H2AL	0	genome.wustl.edu	37	6	27833264	27833264	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	6	27833264	27833264	C	T	SNP	HIST1H2AL	ENST00000357320	human	ensembl	74_37	+1	known	silent	c.132	p.V44	0.608	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	-	no_errors	HIST1H2AL	HGNC	ENSG00000198374				119	0	0	130	25	16.129
NKAPL	0	genome.wustl.edu	37	6	28227239	28227239	+	Silent	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	6	28227239	28227239	G	A	SNP	NKAPL	ENST00000343684	human	ensembl	74_37	+1	known	silent	c.90	p.P30	0.000	NULL	pfam_DUF926	-	no_errors	NKAPL	HGNC	ENSG00000189134				58	0	0	54	16	22.8571
TRIM10	0	genome.wustl.edu	37	6	30121851	30121851	+	Silent	SNP	A	A	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	6	30121851	30121851	A	C	SNP	TRIM10	ENST00000449742	human	ensembl	74_37	-1	known	silent	c.1341	p.A447	0.231	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM10	HGNC	ENSG00000204613				51	0	0	54	10	15.625
PPP1R10	0	genome.wustl.edu	37	6	30572415	30572415	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	6	30572415	30572415	C	T	SNP	PPP1R10	ENST00000376511	human	ensembl	74_37	-1	known	missense	c.1052	p.R351H	0.997	NULL	pfam_TFIIS_N,pfam_Znf_CCCH,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub,smart_Znf_CCCH	-	no_errors	PPP1R10	HGNC	ENSG00000204569				387	0	0	362	20	5.2356
TUBB	0	genome.wustl.edu	37	6	30692147	30692147	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	6	30692147	30692147	C	T	SNP	TUBB	ENST00000327892	human	ensembl	74_37	+1	known	silent	c.1308	p.F436	0.998	NULL	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,pfam_Misato_II_tubulin-like,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Gamma_tubulin,prints_Delta_tubulin,prints_Alpha_tubulin	-	no_errors	TUBB	HGNC	ENSG00000196230				59	0	0	55	8	12.6984
DDR1	0	genome.wustl.edu	37	6	30865936	30865936	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	6	30865936	30865936	C	T	SNP	DDR1	ENST00000376575	human	ensembl	74_37	+1	known	missense	c.2321	p.A774V	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Kinase-like_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	DDR1	HGNC	ENSG00000204580				64	0	0	68	5	6.84932
C6orf25	0	genome.wustl.edu	37	6	31691611	31691611	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	6	31691611	31691611	C	G	SNP	C6orf25	ENST00000375806	human	ensembl	74_37	+1	known	missense	c.257	p.S86C	0.022	NULL	NULL	-	no_errors	C6orf25	HGNC	ENSG00000204420				130	0	0	118	40	25.3165
VARS	0	genome.wustl.edu	37	6	31752401	31752401	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	6	31752401	31752401	T	C	SNP	VARS	ENST00000375663	human	ensembl	74_37	-1	known	missense	c.1438	p.T480A	0.999	pfam_aa-tRNA-synth_Ia,tigrfam_Valyl-tRNA_ligase	pfam_aa-tRNA-synth_Ia,pfam_V/L/I-tRNA-synth_anticodon-bd,pfam_Glutathione_S-Trfase_N,pfam_Methionyl/Leucyl_tRNA_Synth,pfam_GST_C,superfamily_Val/Leu/Ile-tRNA-synth_edit,superfamily_tRNAsynth_1a_anticodon-bd,superfamily_Glutathione-S-Trfase_C-like,superfamily_tRNA-bd_arm,prints_Valyl-tRNA_ligase,tigrfam_Valyl-tRNA_ligase	-	no_errors	VARS	HGNC	ENSG00000204394				74	0	0	71	4	5.33333
TNXB	0	genome.wustl.edu	37	6	32037632	32037632	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	6	32037632	32037632	C	T	SNP	TNXB	ENST00000375247	human	ensembl	74_37	-1	known	missense	c.5285	p.R1762Q	0.000	NULL	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNXB	HGNC	ENSG00000168477				27	0	0	25	13	34.2105
NOTCH4	0	genome.wustl.edu	37	6	32190542	32190542	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	6	32190542	32190542	T	C	SNP	NOTCH4	ENST00000375023	human	ensembl	74_37	-1	known	missense	c.197	p.D66G	1.000	pirsf_Notch,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	pirsf_Notch,pfam_EG-like_dom,pfam_Ankyrin_rpt,pfam_EGF-like_Ca-bd_dom,pfam_Notch_dom,pfam_Notch_NODP_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_4,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom	-	no_errors	NOTCH4	HGNC	ENSG00000204301				46	0	0	38	15	28.3019
ITPR3	0	genome.wustl.edu	37	6	33654203	33654203	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	6	33654203	33654203	C	T	SNP	ITPR3	ENST00000374316	human	ensembl	74_37	+1	known	silent	c.5886	p.H1962	0.327	pfam_RIH_assoc-dom,superfamily_ARM-type_fold	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ARM-type_fold,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR3	HGNC	ENSG00000096433				72	0	0	74	17	18.6813
UHRF1BP1	0	genome.wustl.edu	37	6	34825955	34825955	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	6	34825955	34825955	C	A	SNP	UHRF1BP1	ENST00000192788	human	ensembl	74_37	+1	known	missense	c.1822	p.L608I	1.000	NULL	NULL	-	no_errors	UHRF1BP1	HGNC	ENSG00000065060				112	0	0	100	14	12.2807
ETV7	0	genome.wustl.edu	37	6	36334731	36334731	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	6	36334731	36334731	C	T	SNP	ETV7	ENST00000340181	human	ensembl	74_37	-1	known	missense	c.829	p.E277K	1.000	pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	pfam_Ets_dom,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	ETV7	HGNC	ENSG00000010030				212	1	0.469484	202	13	6.04651
CUL7	0	genome.wustl.edu	37	6	43020511	43020511	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	6	43020511	43020511	G	A	SNP	CUL7	ENST00000535468	human	ensembl	74_37	-1	known	missense	c.172	p.R58C	0.961	NULL	pfam_Cullin_N,pfam_CPH_domain,pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,superfamily_Cullin_homology,superfamily_ARM-type_fold,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL7	HGNC	ENSG00000044090				33	0	0	45	3	6.25
ENPP5	0	genome.wustl.edu	37	6	46135200	46135200	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	6	46135200	46135200	G	T	SNP	ENPP5	ENST00000230565	human	ensembl	74_37	-1	known	missense	c.800	p.S267Y	0.831	pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	-	no_errors	ENPP5	HGNC	ENSG00000112796				172	0	0	132	27	16.9811
PKHD1	0	genome.wustl.edu	37	6	51890533	51890533	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	6	51890533	51890533	G	T	SNP	PKHD1	ENST00000371117	human	ensembl	74_37	-1	known	missense	c.4075	p.L1359M	0.000	NULL	pfam_IPT,pfam_G8_domain,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,smart_IPT,smart_PbH1	-	no_errors	PKHD1	HGNC	ENSG00000170927				73	0	0	64	4	5.88235
KHDRBS2	0	genome.wustl.edu	37	6	62887150	62887150	+	Silent	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	6	62887150	62887150	G	A	SNP	KHDRBS2	ENST00000281156	human	ensembl	74_37	-1	known	silent	c.159	p.I53	1.000	NULL	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	KHDRBS2	HGNC	ENSG00000112232				62	0	0	19	10	34.4828
RIMS1	0	genome.wustl.edu	37	6	72596740	72596740	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	6	72596740	72596740	T	C	SNP	RIMS1	ENST00000521978	human	ensembl	74_37	+1	known	missense	c.14	p.V5A	1.000	NULL	pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_Znf_FYVE_PHD,superfamily_PDZ,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ,pfscan_Znf_FYVE-typ,pfscan_Znf_FYVE-rel	-	no_errors	RIMS1	HGNC	ENSG00000079841				34	0	0	23	7	23.3333
ZNF292	0	genome.wustl.edu	37	6	87965771	87965771	+	Silent	SNP	T	T	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	6	87965771	87965771	T	G	SNP	ZNF292	ENST00000369577	human	ensembl	74_37	+1	known	silent	c.2424	p.T808	0.998	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF292	HGNC	ENSG00000188994				28	0	0	21	6	22.2222
ZNF292	0	genome.wustl.edu	37	6	87967537	87967537	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	6	87967537	87967537	G	A	SNP	ZNF292	ENST00000369577	human	ensembl	74_37	+1	known	missense	c.4190	p.R1397Q	1.000	pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF292	HGNC	ENSG00000188994				95	0	0	91	21	18.75
ZNF292	0	genome.wustl.edu	37	6	87968758	87968758	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	6	87968758	87968758	A	G	SNP	ZNF292	ENST00000369577	human	ensembl	74_37	+1	known	missense	c.5411	p.N1804S	0.854	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF292	HGNC	ENSG00000188994				51	0	0	35	6	14.6341
MDN1	0	genome.wustl.edu	37	6	90382364	90382364	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	6	90382364	90382364	G	A	SNP	MDN1	ENST00000369393	human	ensembl	74_37	-1	known	missense	c.13532	p.A4511V	0.979	superfamily_ARM-type_fold,pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159				70	0	0	32	10	23.8095
MDN1	0	genome.wustl.edu	37	6	90433306	90433306	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	6	90433306	90433306	C	A	SNP	MDN1	ENST00000369393	human	ensembl	74_37	-1	known	missense	c.5703	p.M1901I	1.000	superfamily_P-loop_NTPase,smart_AAA+_ATPase,pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159				40	0	0	13	6	31.5789
EPHB4	0	genome.wustl.edu	37	7	100410518	100410518	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	7	100410518	100410518	G	C	SNP	EPHB4	ENST00000358173	human	ensembl	74_37	-1	known	missense	c.1969	p.Q657E	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Kinase-like_dom,superfamily_Galactose-bd-like,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHB4	HGNC	ENSG00000196411				182	0	0	191	39	16.9565
EPHB4	0	genome.wustl.edu	37	7	100416267	100416267	+	Splice_Site	SNP	C	C	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	7	100416267	100416267	C	G	SNP	EPHB4	ENST00000358173	human	ensembl	74_37	-1	known	splice_site	c.1298-1	e7-1	1.000	-	-	-	no_errors	EPHB4	HGNC	ENSG00000196411				28	0	0	28	7	20
FBXL13	0	genome.wustl.edu	37	7	102604067	102604067	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	7	102604067	102604067	C	T	SNP	FBXL13	ENST00000313221	human	ensembl	74_37	-1	known	missense	c.637	p.V213M	0.010	NULL	smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_F-box_dom	-	no_errors	FBXL13	HGNC	ENSG00000161040				110	0	0	79	7	8.13953
PSMC2	0	genome.wustl.edu	37	7	102996164	102996164	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	7	102996164	102996164	C	A	SNP	PSMC2	ENST00000292644	human	ensembl	74_37	+1	known	missense	c.214	p.L72M	1.000	NULL	pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase,tigrfam_26S_Psome_P45	-	no_errors	PSMC2	HGNC	ENSG00000161057				86	0	0	67	9	11.8421
PNPLA8	0	genome.wustl.edu	37	7	108119718	108119718	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	7	108119718	108119718	G	A	SNP	PNPLA8	ENST00000257694	human	ensembl	74_37	-1	known	missense	c.1984	p.R662C	1.000	superfamily_Acyl_Trfase/lysoPLipase	pfam_Patatin/PLipase_A2-rel,superfamily_Acyl_Trfase/lysoPLipase,superfamily_ARM-type_fold	-	no_errors	PNPLA8	HGNC	ENSG00000135241				136	0	0	83	42	33.6
MET	0	genome.wustl.edu	37	7	116423356	116423356	+	Splice_Site	SNP	A	A	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	7	116423356	116423356	A	G	SNP	MET	ENST00000318493	human	ensembl	74_37	+1	known	splice_site	c.3687-2	e18-2	0.990	-	-	-	no_errors	MET	HGNC	ENSG00000105976				71	0	0	33	11	25
SPAM1	0	genome.wustl.edu	37	7	123593877	123593877	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	7	123593877	123593877	G	A	SNP	SPAM1	ENST00000340011	human	ensembl	74_37	+1	known	missense	c.253	p.G85R	0.000	pfam_Hyaluronidase,superfamily_Glycoside_hydrolase_SF,pirsf_Hyaluronidase	pfam_Hyaluronidase,superfamily_Glycoside_hydrolase_SF,pirsf_Hyaluronidase,prints_Hyaluronidase	-	no_errors	SPAM1	HGNC	ENSG00000106304				70	0	0	49	22	30.9859
SPAM1	0	genome.wustl.edu	37	7	123594152	123594152	+	Silent	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	7	123594152	123594152	T	C	SNP	SPAM1	ENST00000340011	human	ensembl	74_37	+1	known	silent	c.528	p.N176	0.137	pfam_Hyaluronidase,superfamily_Glycoside_hydrolase_SF,pirsf_Hyaluronidase	pfam_Hyaluronidase,superfamily_Glycoside_hydrolase_SF,pirsf_Hyaluronidase,prints_Hyaluronidase	-	no_errors	SPAM1	HGNC	ENSG00000106304				54	0	0	33	20	37.7358
OPN1SW	0	genome.wustl.edu	37	7	128415177	128415177	+	Silent	SNP	C	C	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	7	128415177	128415177	C	A	SNP	OPN1SW	ENST00000249389	human	ensembl	74_37	-1	known	silent	c.384	p.L128	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_Opsin_blue,prints_GPCR_Rhodpsn,prints_Opsin	-	no_errors	OPN1SW	HGNC	ENSG00000128617				50	0	0	56	3	5.08475
SSMEM1	0	genome.wustl.edu	37	7	129847757	129847757	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	7	129847757	129847757	G	T	SNP	SSMEM1	ENST00000297819	human	ensembl	74_37	+1	known	missense	c.7	p.D3Y	1.000	NULL	NULL	-	no_errors	SSMEM1	HGNC	ENSG00000165120				143	0	0	84	36	30
WDR91	0	genome.wustl.edu	37	7	134873256	134873256	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	7	134873256	134873256	A	G	SNP	WDR91	ENST00000354475	human	ensembl	74_37	-1	known	missense	c.1810	p.Y604H	0.974	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR91	HGNC	ENSG00000105875				206	0	0	276	21	7.07071
SLC13A4	0	genome.wustl.edu	37	7	135370367	135370367	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	7	135370367	135370367	G	T	SNP	SLC13A4	ENST00000354042	human	ensembl	74_37	-1	known	missense	c.1508	p.A503D	1.000	pfam_Na/sul_symport,pfam_Cit_transptr-like_dom,pfam_DctM	pfam_Na/sul_symport,pfam_Cit_transptr-like_dom,pfam_DctM	-	no_errors	SLC13A4	HGNC	ENSG00000164707				244	0	0	167	67	28.6325
DGKI	0	genome.wustl.edu	37	7	137075845	137075845	+	RNA	SNP	G	G	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	7	137075845	137075845	G	T	SNP	DGKI	ENST00000477835	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.997	-	-	-	no_errors	DGKI	HGNC	ENSG00000157680				16	0	0	29	4	12.1212
CREB3L2	0	genome.wustl.edu	37	7	137612997	137612997	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	7	137612997	137612997	G	A	SNP	CREB3L2	ENST00000330387	human	ensembl	74_37	-1	known	missense	c.218	p.P73L	1.000	NULL	pfam_bZIP,superfamily_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	CREB3L2	HGNC	ENSG00000182158				26	0	0	24	6	20
OR2F2	0	genome.wustl.edu	37	7	143632486	143632486	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	7	143632486	143632486	G	A	SNP	OR2F2	ENST00000408955	human	ensembl	74_37	+1	known	missense	c.161	p.R54Q	0.018	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2F2	HGNC	ENSG00000221910				292	0	0	338	45	11.7493
ZNF786	0	genome.wustl.edu	37	7	148767858	148767858	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	7	148767858	148767858	G	A	SNP	ZNF786	ENST00000491431	human	ensembl	74_37	-1	known	missense	c.2006	p.T669M	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF786	HGNC	ENSG00000197362				124	0	0	120	30	20
ZNF398	0	genome.wustl.edu	37	7	148876830	148876830	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	7	148876830	148876830	C	T	SNP	ZNF398	ENST00000540950	human	ensembl	74_37	+1	known	silent	c.1881	p.V627	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,pfam_DUF3669_Znf,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	ZNF398	HGNC	ENSG00000197024				52	0	0	72	13	15.2941
ZNF467	0	genome.wustl.edu	37	7	149463148	149463148	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	7	149463148	149463148	G	A	SNP	ZNF467	ENST00000302017	human	ensembl	74_37	-1	known	missense	c.443	p.A148V	0.604	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF467	HGNC	ENSG00000181444				20	0	0	13	7	35
ZNF467	0	genome.wustl.edu	37	7	149463207	149463207	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	7	149463207	149463207	C	T	SNP	ZNF467	ENST00000302017	human	ensembl	74_37	-1	known	silent	c.384	p.G128	0.006	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF467	HGNC	ENSG00000181444				50	0	0	48	12	20
GIMAP7	0	genome.wustl.edu	37	7	150217549	150217549	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	7	150217549	150217549	C	T	SNP	GIMAP7	ENST00000313543	human	ensembl	74_37	+1	known	missense	c.487	p.R163C	0.000	pfam_AIG1,superfamily_P-loop_NTPase	pfam_AIG1,superfamily_P-loop_NTPase	-	no_errors	GIMAP7	HGNC	ENSG00000179144				62	0	0	73	6	7.59494
SLC4A2	0	genome.wustl.edu	37	7	150772823	150772823	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	7	150772823	150772823	G	A	SNP	SLC4A2	ENST00000413384	human	ensembl	74_37	+1	known	missense	c.3432	p.M1144I	1.000	pfam_HCO3_transpt_C,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Anion_exchange,prints_Anion_exchange_2,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A2	HGNC	ENSG00000164889				69	0	0	52	37	41.573
FASTK	0	genome.wustl.edu	37	7	150774416	150774416	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	7	150774416	150774416	C	T	SNP	FASTK	ENST00000297532	human	ensembl	74_37	-1	known	silent	c.1272	p.V424	0.991	pfam_FAST_2	pfam_FAST_2,pfam_FAST_Leu-rich,pfam_RAP,smart_RAP	-	no_errors	FASTK	HGNC	ENSG00000164896				65	0	0	64	22	25.5814
ASB10	0	genome.wustl.edu	37	7	150883648	150883648	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	7	150883648	150883648	G	A	SNP	ASB10	ENST00000422024	human	ensembl	74_37	-1	known	nonsense	c.550	p.R184*	0.158	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C,prints_Ankyrin_rpt	-	no_errors	ASB10	HGNC	ENSG00000146926				16	0	0	15	6	28.5714
DPP6	0	genome.wustl.edu	37	7	154681010	154681010	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	7	154681010	154681010	C	T	SNP	DPP6	ENST00000377770	human	ensembl	74_37	+1	known	missense	c.2333	p.A778V	0.006	pfam_Peptidase_S9	pfam_Peptidase_S9B,pfam_Peptidase_S9,pfam_PD40	-	no_errors	DPP6	HGNC	ENSG00000130226				42	0	0	25	9	26.4706
NOM1	0	genome.wustl.edu	37	7	156755705	156755705	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	7	156755705	156755705	C	T	SNP	NOM1	ENST00000275820	human	ensembl	74_37	+1	known	missense	c.1747	p.R583C	0.107	NULL	pfam_Initiation_fac_eIF4g_MI,pfam_MIF4G-like_typ-3,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3,smart_Initiation_fac_eIF4g_MI	-	no_errors	NOM1	HGNC	ENSG00000146909				31	0	0	37	6	13.9535
PTPRN2	0	genome.wustl.edu	37	7	157414084	157414084	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	7	157414084	157414084	G	A	SNP	PTPRN2	ENST00000404321	human	ensembl	74_37	-1	known	missense	c.2383	p.P795S	0.975	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Receptor_IA-2,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRN2	HGNC	ENSG00000155093				277	0	0	308	78	20.2073
FERD3L	0	genome.wustl.edu	37	7	19184940	19184940	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	7	19184940	19184940	A	C	SNP	FERD3L	ENST00000275461	human	ensembl	74_37	-1	known	missense	c.46	p.F16V	1.000	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	FERD3L	HGNC	ENSG00000146618				51	0	0	59	8	11.9403
OSBPL3	0	genome.wustl.edu	37	7	24839808	24839808	+	Silent	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	7	24839808	24839808	T	C	SNP	OSBPL3	ENST00000313367	human	ensembl	74_37	-1	known	silent	c.2658	p.L886	1.000	NULL	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL3	HGNC	ENSG00000070882				45	0	0	27	4	12.9032
BRAT1	0	genome.wustl.edu	37	7	2578167	2578167	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	7	2578167	2578167	G	A	SNP	BRAT1	ENST00000340611	human	ensembl	74_37	-1	known	missense	c.2002	p.P668S	0.002	NULL	pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	BRAT1	HGNC	ENSG00000106009				21	0	0	15	8	34.7826
TRIL	0	genome.wustl.edu	37	7	28997405	28997405	+	RNA	SNP	T	T	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	7	28997405	28997405	T	G	SNP	TRIL	ENST00000322982	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.984	-	-	-	no_errors	TRIL	HGNC	ENSG00000176734				50	0	0	61	16	20.7792
CPVL	0	genome.wustl.edu	37	7	29105640	29105640	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	7	29105640	29105640	G	A	SNP	CPVL	ENST00000265394	human	ensembl	74_37	-1	known	missense	c.962	p.T321M	0.982	pfam_Peptidase_S10	pfam_Peptidase_S10,prints_Peptidase_S10	-	no_errors	CPVL	HGNC	ENSG00000106066				89	0	0	66	13	16.4557
CARD11	0	genome.wustl.edu	37	7	2962848	2962848	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	7	2962848	2962848	G	A	SNP	CARD11	ENST00000396946	human	ensembl	74_37	-1	known	missense	c.2060	p.A687V	0.853	superfamily_PDZ	pfam_CARD,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,superfamily_PDZ,pfscan_CARD	-	no_errors	CARD11	HGNC	ENSG00000198286				65	0	0	80	6	6.97674
DPY19L2P1	0	genome.wustl.edu	37	7	35131480	35131480	+	RNA	SNP	A	A	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	7	35131480	35131480	A	T	SNP	DPY19L2P1	ENST00000436258	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.997	-	-	-	no_errors	DPY19L2P1	HGNC	ENSG00000189212				113	0	0	102	9	8.10811
ELMO1	0	genome.wustl.edu	37	7	36895150	36895150	+	RNA	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	7	36895150	36895150	G	A	SNP	ELMO1	ENST00000487843	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.012	-	-	-	no_errors	ELMO1	HGNC	ENSG00000155849				138	0	0	111	17	13.2812
ZMIZ2	0	genome.wustl.edu	37	7	44802877	44802877	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	7	44802877	44802877	C	T	SNP	ZMIZ2	ENST00000309315	human	ensembl	74_37	+1	known	silent	c.1725	p.G575	0.998	NULL	pfam_Znf_MIZ,pfscan_Znf_MIZ	-	no_errors	ZMIZ2	HGNC	ENSG00000122515				178	0	0	183	33	15.2778
TNS3	0	genome.wustl.edu	37	7	47344511	47344511	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	7	47344511	47344511	G	A	SNP	TNS3	ENST00000311160	human	ensembl	74_37	-1	known	missense	c.2741	p.A914V	0.001	NULL	pfam_PTB,pfam_Tensin_phosphatase_C2-dom,pfam_SH2,superfamily_C2_dom,smart_Tyr_Pase_cat,smart_SH2,smart_PTB/PI_dom,pfscan_SH2,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TNS3	HGNC	ENSG00000136205				40	0	0	46	13	22.0339
AP5Z1	0	genome.wustl.edu	37	7	4830444	4830444	+	Silent	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	7	4830444	4830444	T	C	SNP	AP5Z1	ENST00000348624	human	ensembl	74_37	+1	known	silent	c.2079	p.C693	0.002	NULL	NULL	-	no_errors	AP5Z1	HGNC	ENSG00000242802				24	0	0	24	3	11.1111
FBXL18	0	genome.wustl.edu	37	7	5540477	5540477	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	7	5540477	5540477	A	G	SNP	FBXL18	ENST00000453700	human	ensembl	74_37	-1	known	missense	c.1423	p.F475L	1.000	NULL	pfam_F-box_dom,superfamily_F-box_dom,pfscan_F-box_dom	-	no_errors	FBXL18	HGNC	ENSG00000155034				34	0	0	31	10	24.3902
ZNF733P	0	genome.wustl.edu	37	7	62752443	62752443	+	RNA	SNP	G	G	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	7	62752443	62752443	G	C	SNP	ZNF733P	ENST00000331425	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ZNF733P	HGNC	ENSG00000185037				18	0	0	40	5	11.1111
KCTD7	0	genome.wustl.edu	37	7	66103382	66103382	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	7	66103382	66103382	C	T	SNP	KCTD7	ENST00000275532	human	ensembl	74_37	+1	known	missense	c.457	p.R153C	1.000	NULL	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	-	no_errors	KCTD7	HGNC	ENSG00000243335				76	0	0	89	13	12.7451
FZD9	0	genome.wustl.edu	37	7	72849399	72849399	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	7	72849399	72849399	C	T	SNP	FZD9	ENST00000344575	human	ensembl	74_37	+1	known	silent	c.1062	p.H354	1.000	pfam_Frizzled,pfscan_GPCR_2-like	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	FZD9	HGNC	ENSG00000188763				62	0	0	97	6	5.82524
WBSCR28	0	genome.wustl.edu	37	7	73275584	73275584	+	Silent	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	7	73275584	73275584	G	A	SNP	WBSCR28	ENST00000320531	human	ensembl	74_37	+1	known	silent	c.60	p.R20	0.042	NULL	NULL	-	no_errors	WBSCR28	HGNC	ENSG00000175877				42	0	0	49	4	7.54717
CCDC146	0	genome.wustl.edu	37	7	76889459	76889459	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	7	76889459	76889459	C	T	SNP	CCDC146	ENST00000285871	human	ensembl	74_37	+1	known	nonsense	c.892	p.R298*	0.998	NULL	NULL	-	no_errors	CCDC146	HGNC	ENSG00000135205				92	0	0	76	6	7.31707
SEMA3D	0	genome.wustl.edu	37	7	84702392	84702392	+	Silent	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	7	84702392	84702392	T	C	SNP	SEMA3D	ENST00000284136	human	ensembl	74_37	-1	known	silent	c.381	p.E127	1.000	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Semap_dom,pfam_Ig_V-set,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_Ig_sub,pfscan_Semap_dom,pfscan_Ig-like_dom	-	no_errors	SEMA3D	HGNC	ENSG00000153993				75	0	0	54	6	10
AKAP9	0	genome.wustl.edu	37	7	91631714	91631714	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	7	91631714	91631714	A	G	SNP	AKAP9	ENST00000359028	human	ensembl	74_37	+1	known	missense	c.2519	p.E840G	1.000	NULL	pfam_PACT_domain,superfamily_Prefoldin,superfamily_YbaB	-	no_errors	AKAP9	HGNC	ENSG00000127914				141	0	0	90	8	8.16327
COL1A2	0	genome.wustl.edu	37	7	94034179	94034179	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	7	94034179	94034179	G	A	SNP	COL1A2	ENST00000297268	human	ensembl	74_37	+1	known	missense	c.407	p.G136D	1.000	pfam_Collagen	pfam_Collagen,pfam_Fib_collagen_C,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fib_collagen_C	-	no_errors	COL1A2	HGNC	ENSG00000164692				160	0	0	124	23	15.6463
ZNF655	0	genome.wustl.edu	37	7	99170985	99170985	+	Silent	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	7	99170985	99170985	T	C	SNP	ZNF655	ENST00000424881	human	ensembl	74_37	+1	known	silent	c.1359	p.S453	0.268	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF655	HGNC	ENSG00000197343				64	0	0	56	34	37.7778
CYP3A7	0	genome.wustl.edu	37	7	99315250	99315250	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	7	99315250	99315250	C	T	SNP	CYP3A7	ENST00000336374	human	ensembl	74_37	-1	known	missense	c.331	p.V111M	0.001	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_CYP3A,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-II,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_B	-	no_errors	CYP3A7	HGNC	ENSG00000160870				49	0	0	53	3	5.35714
TNFRSF11B	0	genome.wustl.edu	37	8	119941097	119941097	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	8	119941097	119941097	C	T	SNP	TNFRSF11B	ENST00000297350	human	ensembl	74_37	-1	known	missense	c.472	p.A158T	1.000	pirsf_TNFR_11B,smart_TNFR/NGFR_Cys_rich_reg	pirsf_TNFR_11B,pfam_TNFR/NGFR_Cys_rich_reg,pfam_Death_domain,superfamily_DEATH-like_dom,smart_TNFR/NGFR_Cys_rich_reg,smart_Death_domain,prints_TNFR_11B,prints_TNFR_11,pfscan_TNFR/NGFR_Cys_rich_reg	-	no_errors	TNFRSF11B	HGNC	ENSG00000164761				127	0	0	95	21	18.1034
ADCY8	0	genome.wustl.edu	37	8	132051861	132051861	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	8	132051861	132051861	G	A	SNP	ADCY8	ENST00000286355	human	ensembl	74_37	-1	known	missense	c.719	p.T240M	0.989	NULL	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY8	HGNC	ENSG00000155897				36	0	0	33	11	25
EPPK1	0	genome.wustl.edu	37	8	144946676	144946676	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	8	144946676	144946676	T	G	SNP	EPPK1	ENST00000525985	human	ensembl	74_37	-1	known	missense	c.746	p.E249A	0.749	NULL	pfam_Plectin_repeat,smart_Plectin_repeat	-	no_errors	EPPK1	HGNC	ENSG00000227184				15	0	0	19	5	20.8333
PLEC	0	genome.wustl.edu	37	8	144994175	144994175	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	8	144994175	144994175	G	A	SNP	PLEC	ENST00000322810	human	ensembl	74_37	-1	known	missense	c.10225	p.R3409C	0.991	NULL	pfam_Plectin_repeat,pfam_CH-domain,pfam_S10_plectin_N,superfamily_CH-domain,superfamily_Chorismate_mutase_type_II,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,pfscan_CH-domain	-	no_errors	PLEC	HGNC	ENSG00000178209				106	0	0	132	7	5.03597
ZNF251	0	genome.wustl.edu	37	8	145948606	145948606	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	8	145948606	145948606	C	T	SNP	ZNF251	ENST00000292562	human	ensembl	74_37	-1	known	missense	c.439	p.V147M	0.002	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF251	HGNC	ENSG00000198169				91	0	0	87	18	17.1429
COMMD5	0	genome.wustl.edu	37	8	146076615	146076615	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	8	146076615	146076615	C	A	SNP	COMMD5	ENST00000450361	human	ensembl	74_37	-1	known	missense	c.109	p.A37S	0.999	NULL	pfam_HCaRG	-	no_errors	COMMD5	HGNC	ENSG00000170619				111	0	0	124	29	18.9542
ZNF596	0	genome.wustl.edu	37	8	196026	196026	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	8	196026	196026	C	T	SNP	ZNF596	ENST00000308811	human	ensembl	74_37	+1	known	silent	c.1179	p.C393	0.167	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF596	HGNC	ENSG00000172748				75	0	0	70	8	10.2564
MYOM2	0	genome.wustl.edu	37	8	2072088	2072088	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	8	2072088	2072088	G	A	SNP	MYOM2	ENST00000262113	human	ensembl	74_37	+1	known	missense	c.3692	p.C1231Y	1.000	NULL	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	MYOM2	HGNC	ENSG00000036448				38	0	0	24	6	20
TRIM35	0	genome.wustl.edu	37	8	27145611	27145611	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	8	27145611	27145611	C	T	SNP	TRIM35	ENST00000305364	human	ensembl	74_37	-1	known	missense	c.938	p.G313D	1.000	superfamily_ConA-like_lec_gl_sf,smart_PRY,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM35	HGNC	ENSG00000104228				62	0	0	73	9	10.9756
TRIM35	0	genome.wustl.edu	37	8	27151667	27151667	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	8	27151667	27151667	G	A	SNP	TRIM35	ENST00000305364	human	ensembl	74_37	-1	known	missense	c.692	p.T231M	0.557	NULL	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM35	HGNC	ENSG00000104228				112	0	0	73	15	17.0455
SCARA5	0	genome.wustl.edu	37	8	27779531	27779531	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	8	27779531	27779531	G	A	SNP	SCARA5	ENST00000354914	human	ensembl	74_37	-1	known	missense	c.473	p.A158V	0.214	NULL	pfam_SRCR,pfam_Collagen,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,prints_SRCR,pfscan_SRCR	-	no_errors	SCARA5	HGNC	ENSG00000168079				9	0	0	4	5	55.5556
CSMD1	0	genome.wustl.edu	37	8	2836280	2836280	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	8	2836280	2836280	C	T	SNP	CSMD1	ENST00000520002	human	ensembl	74_37	-1	known	missense	c.8423	p.R2808H	0.999	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD1	HGNC	ENSG00000183117				33	0	0	13	6	31.5789
DUSP4	0	genome.wustl.edu	37	8	29195908	29195908	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	8	29195908	29195908	C	T	SNP	DUSP4	ENST00000240100	human	ensembl	74_37	-1	known	silent	c.690	p.S230	0.267	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pirsf_MKP,pfscan_Dual-sp_phosphatase_subgr_cat,prints_MKP	pfam_Dual-sp_phosphatase_cat-dom,pfam_Rhodanese-like_dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,smart_Dual-sp_phosphatase_subgr_cat,smart_Tyr_Pase_cat,pirsf_MKP,pfscan_Rhodanese-like_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_MKP	-	no_errors	DUSP4	HGNC	ENSG00000120875				89	0	0	64	11	14.6667
FGFR1	0	genome.wustl.edu	37	8	38275456	38275456	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	8	38275456	38275456	G	A	SNP	FGFR1	ENST00000425967	human	ensembl	74_37	-1	known	missense	c.1577	p.A526V	0.997	pirsf_FGF_rcpt_fam,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_FGF_rcpt_fam,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	FGFR1	HGNC	ENSG00000077782				95	0	0	102	6	5.55556
POLB	0	genome.wustl.edu	37	8	42207582	42207582	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	8	42207582	42207582	G	T	SNP	POLB	ENST00000265421	human	ensembl	74_37	+1	known	missense	c.319	p.G107C	1.000	pfam_DNA_pol_lambd_fingers_domain,superfamily_DNA_pol_lambd_fingers_domain,smart_DNA-dir_DNA_pol_X,smart_Hlx-hairpin-Hlx_DNA-bd_motif,prints_DNA_pol_X	pfam_DNA_pol_lambd_fingers_domain,superfamily_DNA_pol_b-like_N,superfamily_DNA_pol_lambd_fingers_domain,smart_DNA-dir_DNA_pol_X,smart_Hlx-hairpin-Hlx_DNA-bd_motif,prints_DNA_pol_X_beta-like,prints_DNA_pol_X	-	no_errors	POLB	HGNC	ENSG00000070501				89	0	0	76	4	5
HOOK3	0	genome.wustl.edu	37	8	42812260	42812260	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	8	42812260	42812260	C	T	SNP	HOOK3	ENST00000307602	human	ensembl	74_37	+1	known	silent	c.492	p.V164	0.800	pfam_Hook-related_fam	pfam_Hook-related_fam,superfamily_t-SNARE	-	no_errors	HOOK3	HGNC	ENSG00000168172				76	0	0	16	8	33.3333
HOOK3	0	genome.wustl.edu	37	8	42821647	42821647	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	8	42821647	42821647	C	T	SNP	HOOK3	ENST00000307602	human	ensembl	74_37	+1	known	missense	c.811	p.R271C	1.000	pfam_Hook-related_fam	pfam_Hook-related_fam,superfamily_t-SNARE	-	no_errors	HOOK3	HGNC	ENSG00000168172				154	0	0	114	8	6.55738
MCM4	0	genome.wustl.edu	37	8	48874074	48874074	+	Splice_Site	SNP	A	A	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	8	48874074	48874074	A	C	SNP	MCM4	ENST00000262105	human	ensembl	74_37	+1	known	splice_site	c.71-2	e2-2	0.971	-	-	-	no_errors	MCM4	HGNC	ENSG00000104738				65	0	0	64	4	5.88235
RB1CC1	0	genome.wustl.edu	37	8	53568774	53568774	+	Silent	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	8	53568774	53568774	G	A	SNP	RB1CC1	ENST00000025008	human	ensembl	74_37	-1	known	silent	c.3615	p.Y1205	0.951	NULL	pfam_Autophagy-rel_p11	-	no_errors	RB1CC1	HGNC	ENSG00000023287				201	0	0	126	33	20.7547
OPRK1	0	genome.wustl.edu	37	8	54147470	54147470	+	Silent	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	8	54147470	54147470	G	A	SNP	OPRK1	ENST00000265572	human	ensembl	74_37	-1	known	silent	c.459	p.S153	0.637	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srx,prints_GPCR_Rhodpsn,prints_NPY_rcpt,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srx,prints_Kappa_opi_rcpt,prints_GPCR_Rhodpsn,prints_Opioid_rcpt,prints_Neuropept_B/W_rcpt,prints_Somatstn_rcpt,prints_NPY_rcpt,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OPRK1	HGNC	ENSG00000082556				51	0	0	51	8	13.5593
SLCO5A1	0	genome.wustl.edu	37	8	70585114	70585114	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	8	70585114	70585114	G	A	SNP	SLCO5A1	ENST00000260126	human	ensembl	74_37	-1	known	missense	c.2537	p.P846L	0.044	NULL	pfam_OA_transporter,pfam_MFS,pfam_Kazal_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO5A1	HGNC	ENSG00000137571				111	0	0	83	24	22.4299
SLCO5A1	0	genome.wustl.edu	37	8	70744651	70744651	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	8	70744651	70744651	C	T	SNP	SLCO5A1	ENST00000260126	human	ensembl	74_37	-1	known	silent	c.258	p.P86	0.708	NULL	pfam_OA_transporter,pfam_MFS,pfam_Kazal_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO5A1	HGNC	ENSG00000137571				55	0	0	59	15	20.2703
TRPA1	0	genome.wustl.edu	37	8	72946517	72946517	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	8	72946517	72946517	A	G	SNP	TRPA1	ENST00000262209	human	ensembl	74_37	-1	known	missense	c.2651	p.F884S	1.000	pfam_Ion_trans_dom	pfam_Ankyrin_rpt,pfam_Ion_trans_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	TRPA1	HGNC	ENSG00000104321				155	0	0	71	14	16.4706
PAG1	0	genome.wustl.edu	37	8	81897284	81897284	+	Silent	SNP	A	A	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	8	81897284	81897284	A	G	SNP	PAG1	ENST00000220597	human	ensembl	74_37	-1	known	silent	c.603	p.S201	0.000	NULL	NULL	-	no_errors	PAG1	HGNC	ENSG00000076641				78	0	0	96	9	8.57143
ERI1	0	genome.wustl.edu	37	8	8865587	8865587	+	Silent	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	8	8865587	8865587	G	A	SNP	ERI1	ENST00000250263	human	ensembl	74_37	+1	known	silent	c.216	p.T72	0.027	NULL	pfam_Exonuclease_RNaseT/DNA_pol3,pfam_SAP_dom,superfamily_RNaseH-like_dom,smart_SAP_dom,smart_Exonuclease,pfscan_SAP_dom	-	no_errors	ERI1	HGNC	ENSG00000104626				124	0	0	80	22	21.5686
MTERFD1	0	genome.wustl.edu	37	8	97269256	97269256	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	8	97269256	97269256	G	A	SNP	MTERFD1	ENST00000287025	human	ensembl	74_37	-1	known	missense	c.421	p.P141S	0.861	NULL	pfam_Mit_transcrip_term-rel,smart_Mit_transcrip_term-rel	-	no_errors	MTERFD1	HGNC	ENSG00000156469				82	0	0	47	5	9.61538
CYLC2	0	genome.wustl.edu	37	9	105767642	105767642	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	9	105767642	105767642	G	C	SNP	CYLC2	ENST00000374798	human	ensembl	74_37	+1	known	missense	c.729	p.K243N	0.000	NULL	NULL	-	no_errors	CYLC2	HGNC	ENSG00000155833				76	0	0	36	8	18.1818
ACTL7B	0	genome.wustl.edu	37	9	111617863	111617863	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	9	111617863	111617863	C	A	SNP	ACTL7B	ENST00000374667	human	ensembl	74_37	-1	known	missense	c.348	p.K116N	1.000	pfam_Actin-related,smart_Actin-related,prints_Actin-related	pfam_Actin-related,smart_Actin-related,prints_Actin-related	-	no_errors	ACTL7B	HGNC	ENSG00000148156				66	0	0	52	7	11.8644
ACTL7A	0	genome.wustl.edu	37	9	111625161	111625161	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	9	111625161	111625161	C	T	SNP	ACTL7A	ENST00000333999	human	ensembl	74_37	+1	known	silent	c.559	p.L187	1.000	pfam_Actin-related,smart_Actin-related,prints_Actin-related	pfam_Actin-related,smart_Actin-related,prints_Actin-related	-	no_errors	ACTL7A	HGNC	ENSG00000187003				107	0	0	95	10	9.52381
PTPN3	0	genome.wustl.edu	37	9	112144725	112144725	+	Silent	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	9	112144725	112144725	G	A	SNP	PTPN3	ENST00000374541	human	ensembl	74_37	-1	known	silent	c.2385	p.T795	0.996	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pirsf_Tyr_Pase_non-rcpt_typ-3/4,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_PDZ,pfam_Dual-sp_phosphatase_cat-dom,superfamily_FERM_central,superfamily_PDZ,smart_Band_41_domain,smart_PDZ,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-3/4,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam,prints_Ez/rad/moesin_like,pfscan_FERM_domain,pfscan_PDZ,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN3	HGNC	ENSG00000070159				52	0	0	46	16	25.8065
KIAA0368	0	genome.wustl.edu	37	9	114138817	114138817	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	9	114138817	114138817	G	A	SNP	KIAA0368	ENST00000259335	human	ensembl	74_37	-1	known	missense	c.4493	p.A1498V	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	KIAA0368	HGNC	ENSG00000136813				16	0	0	12	5	29.4118
SUSD1	0	genome.wustl.edu	37	9	114874015	114874015	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	9	114874015	114874015	G	T	SNP	SUSD1	ENST00000374264	human	ensembl	74_37	-1	known	missense	c.1090	p.P364T	0.384	NULL	pfam_EGF-like_Ca-bd_dom,pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_Sushi_SCR_CCP	-	no_errors	SUSD1	HGNC	ENSG00000106868				83	0	0	78	15	16.129
DFNB31	0	genome.wustl.edu	37	9	117186703	117186703	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	9	117186703	117186703	C	T	SNP	DFNB31	ENST00000362057	human	ensembl	74_37	-1	known	missense	c.1327	p.A443T	1.000	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	DFNB31	HGNC	ENSG00000095397				66	0	0	73	4	5.19481
TNFSF15	0	genome.wustl.edu	37	9	117552745	117552745	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	9	117552745	117552745	G	A	SNP	TNFSF15	ENST00000374045	human	ensembl	74_37	-1	known	missense	c.743	p.A248V	1.000	pfam_TNF_dom,superfamily_Tumour_necrosis_fac-like_dom,smart_TNF_dom,pfscan_TNF_dom,prints_TNF	pfam_TNF_dom,superfamily_Tumour_necrosis_fac-like_dom,smart_TNF_dom,pfscan_TNF_dom,prints_TNF	-	no_errors	TNFSF15	HGNC	ENSG00000181634				172	0	0	103	16	13.4454
PAPPA	0	genome.wustl.edu	37	9	119109445	119109445	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	9	119109445	119109445	C	T	SNP	PAPPA	ENST00000328252	human	ensembl	74_37	+1	known	silent	c.3921	p.G1307	0.998	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,pfam_Notch_dom,pfam_Peptidase_M43,superfamily_ConA-like_lec_gl_sf,superfamily_Sushi_SCR_CCP,superfamily_Fibronectin_type3,superfamily_Notch_dom,smart_LamG-like,smart_Notch_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,tigrfam_Myxo_disulph_rpt	-	no_errors	PAPPA	HGNC	ENSG00000182752				79	0	0	73	10	12.0482
CNTRL	0	genome.wustl.edu	37	9	123877367	123877367	+	Splice_Site	SNP	A	A	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	9	123877367	123877367	A	G	SNP	CNTRL	ENST00000238341	human	ensembl	74_37	+1	known	splice_site	c.1346-2	e9-2	0.999	-	-	-	no_errors	CNTRL	HGNC	ENSG00000119397				86	0	0	50	16	24.2424
GAPVD1	0	genome.wustl.edu	37	9	128061329	128061329	+	Silent	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	9	128061329	128061329	T	C	SNP	GAPVD1	ENST00000394105	human	ensembl	74_37	+1	known	silent	c.129	p.R43	0.232	NULL	pfam_RasGAP,pfam_VPS9,superfamily_Rho_GTPase_activation_prot,smart_VPS9_subgr,pfscan_VPS9,pfscan_RasGAP	-	no_errors	GAPVD1	HGNC	ENSG00000165219				57	0	0	39	4	9.30233
ZBTB43	0	genome.wustl.edu	37	9	129595476	129595476	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	9	129595476	129595476	C	T	SNP	ZBTB43	ENST00000373457	human	ensembl	74_37	+1	known	missense	c.688	p.P230S	1.000	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB43	HGNC	ENSG00000169155				38	0	0	37	4	9.7561
ANGPTL2	0	genome.wustl.edu	37	9	129856048	129856048	+	Silent	SNP	G	G	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	9	129856048	129856048	G	T	SNP	ANGPTL2	ENST00000373425	human	ensembl	74_37	-1	known	silent	c.975	p.G325	0.986	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	-	no_errors	ANGPTL2	HGNC	ENSG00000136859				147	0	0	145	17	10.4938
GARNL3	0	genome.wustl.edu	37	9	130106617	130106617	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	9	130106617	130106617	A	G	SNP	GARNL3	ENST00000373387	human	ensembl	74_37	+1	known	missense	c.1355	p.Q452R	1.000	NULL	pfam_Citron,pfam_Rap_GAP_dom,smart_Citron,pfscan_Rap_GAP_dom	-	no_errors	GARNL3	HGNC	ENSG00000136895				135	0	0	148	8	5.12821
ST6GALNAC6	0	genome.wustl.edu	37	9	130653119	130653119	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	9	130653119	130653119	C	T	SNP	ST6GALNAC6	ENST00000291839	human	ensembl	74_37	-1	known	silent	c.501	p.R167	1.000	pfam_Glyco_trans_29	pfam_Glyco_trans_29	-	no_errors	ST6GALNAC6	HGNC	ENSG00000160408				46	0	0	37	14	27.451
CERCAM	0	genome.wustl.edu	37	9	131198024	131198024	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	9	131198024	131198024	C	T	SNP	CERCAM	ENST00000372838	human	ensembl	74_37	+1	known	missense	c.1628	p.A543V	0.000	NULL	pfam_Glyco_trans_25	-	no_errors	CERCAM	HGNC	ENSG00000167123				32	0	0	27	4	12.9032
SPTAN1	0	genome.wustl.edu	37	9	131386637	131386637	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	9	131386637	131386637	A	G	SNP	SPTAN1	ENST00000358161	human	ensembl	74_37	+1	known	missense	c.5863	p.K1955E	0.998	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_EF_hand_dom,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,smart_EF_hand_dom,pfscan_EF_hand_dom,pfscan_SH3_domain,prints_Spectrin_alpha_SH3,prints_SH3_domain	-	no_errors	SPTAN1	HGNC	ENSG00000197694				42	0	0	31	4	11.4286
C9orf50	0	genome.wustl.edu	37	9	132375434	132375434	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	9	132375434	132375434	C	T	SNP	C9orf50	ENST00000372478	human	ensembl	74_37	-1	known	silent	c.1140	p.P380	0.001	NULL	NULL	-	no_errors	C9orf50	HGNC	ENSG00000179058				55	0	0	54	17	23.9437
PRRC2B	0	genome.wustl.edu	37	9	134357813	134357813	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	9	134357813	134357813	G	A	SNP	PRRC2B	ENST00000357304	human	ensembl	74_37	+1	known	missense	c.5039	p.R1680Q	1.000	NULL	pfam_BAT2_N	-	no_errors	PRRC2B	HGNC	ENSG00000130723				224	0	0	212	59	21.7712
DDX31	0	genome.wustl.edu	37	9	135493751	135493751	+	Silent	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	9	135493751	135493751	G	A	SNP	DDX31	ENST00000372159	human	ensembl	74_37	-1	known	silent	c.2106	p.H702	1.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX31	HGNC	ENSG00000125485				134	0	0	81	6	6.89655
ABO	0	genome.wustl.edu	37	9	136131645	136131645	+	RNA	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	9	136131645	136131645	G	A	SNP	ABO	ENST00000453660	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	ABO	HGNC	ENSG00000175164				56	0	0	39	14	26.4151
CAMSAP1	0	genome.wustl.edu	37	9	138710908	138710908	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	9	138710908	138710908	C	T	SNP	CAMSAP1	ENST00000409386	human	ensembl	74_37	-1	known	missense	c.3940	p.V1314M	0.001	NULL	pfam_CKK_domain,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_PRC_barrel-like,superfamily_CH-domain	-	no_errors	CAMSAP1	HGNC	ENSG00000130559				20	0	0	19	5	20.8333
LHX3	0	genome.wustl.edu	37	9	139089228	139089228	+	Silent	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	9	139089228	139089228	G	A	SNP	LHX3	ENST00000371746	human	ensembl	74_37	-1	known	silent	c.1152	p.P384	0.430	NULL	pfam_Znf_LIM,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeobox_dom,pfscan_Znf_LIM,pfscan_Homeobox_dom	-	no_errors	LHX3	HGNC	ENSG00000107187				25	0	0	23	4	14.8148
CARD9	0	genome.wustl.edu	37	9	139265581	139265581	+	Silent	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	9	139265581	139265581	T	C	SNP	CARD9	ENST00000371732	human	ensembl	74_37	-1	known	silent	c.339	p.S113	0.433	NULL	pfam_CARD,superfamily_DEATH-like_dom,pfscan_CARD	-	no_errors	CARD9	HGNC	ENSG00000187796				32	0	0	28	7	20
NOTCH1	0	genome.wustl.edu	37	9	139401051	139401051	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	9	139401051	139401051	C	T	SNP	NOTCH1	ENST00000277541	human	ensembl	74_37	-1	known	silent	c.3942	p.K1314	0.758	pfam_EGF_extracell,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pirsf_Notch,pfscan_EG-like_dom	pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,pfam_Ankyrin_rpt,pfam_EGF_extracell,pfam_Notch_NOD_dom,pfam_DUF3454_notch,pfam_Notch_NODP_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Notch_dom,smart_Ankyrin_rpt,pirsf_Notch,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom,prints_Notch_1,prints_Notch_dom	-	no_errors	NOTCH1	HGNC	ENSG00000148400				22	0	0	27	6	18.1818
MAMDC4	0	genome.wustl.edu	37	9	139751877	139751877	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	9	139751877	139751877	C	T	SNP	MAMDC4	ENST00000445819	human	ensembl	74_37	+1	known	missense	c.2402	p.A801V	0.033	pfam_MAM_dom,superfamily_ConA-like_lec_gl_sf,smart_MAM_dom,pfscan_MAM_dom	pfam_MAM_dom,pfam_LDrepeatLR_classA_rpt,superfamily_ConA-like_lec_gl_sf,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_MAM_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_MAM_dom,prints_LDrepeatLR_classA_rpt	-	no_errors	MAMDC4	HGNC	ENSG00000177943				61	0	0	49	14	22.2222
TRAF2	0	genome.wustl.edu	37	9	139820133	139820133	+	Splice_Site	SNP	A	A	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	9	139820133	139820133	A	C	SNP	TRAF2	ENST00000359662	human	ensembl	74_37	+1	known	splice_site	c.1444-2	e10-2	1.000	-	-	-	no_errors	TRAF2	HGNC	ENSG00000127191				56	0	0	56	11	16.4179
NDOR1	0	genome.wustl.edu	37	9	140100312	140100312	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	9	140100312	140100312	C	T	SNP	NDOR1	ENST00000371521	human	ensembl	74_37	+1	known	missense	c.83	p.A28V	1.000	pfam_Flavodoxin/NO_synth,pfscan_Flavodoxin/NO_synth	pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,superfamily_Riboflavin_synthase-like_b-brl,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	NDOR1	HGNC	ENSG00000188566				45	0	0	46	19	29.2308
FAM166A	0	genome.wustl.edu	37	9	140139126	140139126	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	9	140139126	140139126	T	C	SNP	FAM166A	ENST00000344774	human	ensembl	74_37	-1	known	missense	c.715	p.M239V	0.161	NULL	pfam_UPF0573/UPF0605	-	no_errors	FAM166A	HGNC	ENSG00000188163				61	0	0	48	8	14.2857
FREM1	0	genome.wustl.edu	37	9	14737531	14737531	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	9	14737531	14737531	T	A	SNP	FREM1	ENST00000380881	human	ensembl	74_37	-1	known	missense	c.6406	p.T2136S	1.000	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,pfam_Calx_beta,superfamily_C-type_lectin_fold,superfamily_Cadherin-like,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	FREM1	HGNC	ENSG00000164946				24	0	0	21	5	19.2308
CBWD1	0	genome.wustl.edu	37	9	164038	164038	+	Splice_Site	SNP	C	C	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	9	164038	164038	C	G	SNP	CBWD1	ENST00000356521	human	ensembl	74_37	-1	known	splice_site	c.431-1	e5-1	1.000	-	-	-	no_errors	CBWD1	HGNC	ENSG00000172785				271	0	0	152	9	5.59006
HAUS6	0	genome.wustl.edu	37	9	19058474	19058474	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	9	19058474	19058474	C	T	SNP	HAUS6	ENST00000380502	human	ensembl	74_37	-1	known	missense	c.2291	p.S764N	1.000	NULL	NULL	-	no_errors	HAUS6	HGNC	ENSG00000147874				26	0	0	22	3	12
MLLT3	0	genome.wustl.edu	37	9	20414346	20414346	+	Silent	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	9	20414346	20414346	G	A	SNP	MLLT3	ENST00000380338	human	ensembl	74_37	-1	known	silent	c.498	p.S166	0.975	NULL	pfam_YEATS,pfscan_YEATS	-	no_errors	MLLT3	HGNC	ENSG00000171843				49	0	0	60	13	17.8082
SMARCA2	0	genome.wustl.edu	37	9	2060967	2060967	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	9	2060967	2060967	A	G	SNP	SMARCA2	ENST00000349721	human	ensembl	74_37	+1	known	missense	c.1673	p.K558R	1.000	NULL	pfam_SNF2_N,pfam_Bromodomain,pfam_BRK_domain,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,pfam_Gln-Leu-Gln_QLQ,superfamily_P-loop_NTPase,superfamily_Bromodomain,superfamily_RNaseH-like_dom,smart_Gln-Leu-Gln_QLQ,smart_HAS_subgr,smart_BRK_domain,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Bromodomain,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	SMARCA2	HGNC	ENSG00000080503				52	0	0	48	4	7.69231
KCNV2	0	genome.wustl.edu	37	9	2718786	2718786	+	Silent	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	9	2718786	2718786	G	A	SNP	KCNV2	ENST00000382082	human	ensembl	74_37	+1	known	silent	c.1047	p.Q349	1.000	pfam_Ion_trans_dom,prints_K_chnl	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,prints_K_chnl,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCNV2	HGNC	ENSG00000168263				100	0	0	101	22	17.8862
SPINK4	0	genome.wustl.edu	37	9	33240248	33240248	+	Silent	SNP	C	C	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	9	33240248	33240248	C	A	SNP	SPINK4	ENST00000379721	human	ensembl	74_37	+1	known	silent	c.42	p.A14	0.760	NULL	pfam_Kazal_dom,smart_Kazal_dom	-	no_errors	SPINK4	HGNC	ENSG00000122711				18	0	0	8	3	27.2727
NOL6	0	genome.wustl.edu	37	9	33469213	33469213	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	9	33469213	33469213	G	A	SNP	NOL6	ENST00000297990	human	ensembl	74_37	-1	known	missense	c.854	p.A285V	0.995	pfam_Nrap	pfam_Nrap	-	no_errors	NOL6	HGNC	ENSG00000165271				107	0	0	102	18	15
UBAP1	0	genome.wustl.edu	37	9	34234267	34234267	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	9	34234267	34234267	A	G	SNP	UBAP1	ENST00000545103	human	ensembl	74_37	+1	known	missense	c.280	p.T94A	1.000	NULL	superfamily_UBA-like,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	UBAP1	HGNC	ENSG00000165006				122	0	0	62	20	24.3902
KIF24	0	genome.wustl.edu	37	9	34256112	34256112	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	9	34256112	34256112	C	T	SNP	KIF24	ENST00000379166	human	ensembl	74_37	-1	known	missense	c.3493	p.E1165K	0.002	NULL	pfam_Kinesin_motor_dom,pfam_SAM_type1,superfamily_P-loop_NTPase,superfamily_SAM/pointed,smart_Kinesin_motor_dom,pfscan_SAM,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF24	HGNC	ENSG00000186638				61	0	0	77	5	6.09756
ZCCHC7	0	genome.wustl.edu	37	9	37126908	37126908	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	9	37126908	37126908	C	A	SNP	ZCCHC7	ENST00000336755	human	ensembl	74_37	+1	known	missense	c.579	p.N193K	1.000	NULL	pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC7	HGNC	ENSG00000147905				154	0	0	92	37	28.6822
DOCK8	0	genome.wustl.edu	37	9	379854	379854	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	9	379854	379854	C	T	SNP	DOCK8	ENST00000453981	human	ensembl	74_37	+1	known	missense	c.2524	p.H842Y	1.000	NULL	pfam_DOCK_C,pfam_DOCK_C/D_N,superfamily_ARM-type_fold	-	no_errors	DOCK8	HGNC	ENSG00000107099				49	0	0	59	13	18.0556
CNTNAP3	0	genome.wustl.edu	37	9	39140608	39140608	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	9	39140608	39140608	T	C	SNP	CNTNAP3	ENST00000297668	human	ensembl	74_37	-1	known	missense	c.1784	p.H595R	1.000	superfamily_Fibrinogen_a/b/g_C_dom	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP3	HGNC	ENSG00000106714				92	0	0	84	7	7.69231
TMEM2	0	genome.wustl.edu	37	9	74347431	74347431	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	9	74347431	74347431	G	T	SNP	TMEM2	ENST00000377044	human	ensembl	74_37	-1	known	missense	c.1399	p.P467T	1.000	superfamily_Pectin_lyase_fold/virulence	pfam_G8_domain,superfamily_Pectin_lyase_fold/virulence	-	no_errors	TMEM2	HGNC	ENSG00000135048				46	0	0	30	3	9.09091
TRPM6	0	genome.wustl.edu	37	9	77448921	77448921	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	9	77448921	77448921	C	T	SNP	TRPM6	ENST00000451710	human	ensembl	74_37	-1	known	missense	c.662	p.G221E	1.000	NULL	pfam_MHCK_EF2_kinase,pfam_Ion_trans_dom,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	TRPM6	HGNC	ENSG00000119121				72	0	0	47	10	17.5439
VPS13A	0	genome.wustl.edu	37	9	79981681	79981681	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	9	79981681	79981681	A	C	SNP	VPS13A	ENST00000360280	human	ensembl	74_37	+1	known	missense	c.8364	p.E2788D	0.924	NULL	pfam_VPSAP_dom,pfam_Autophagy-rel_C	-	no_errors	VPS13A	HGNC	ENSG00000197969				77	0	0	26	7	21.2121
HNRNPK	0	genome.wustl.edu	37	9	86586858	86586858	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	9	86586858	86586858	C	T	SNP	HNRNPK	ENST00000376263	human	ensembl	74_37	-1	known	missense	c.892	p.G298S	1.000	NULL	pfam_KH_dom_type_1,pfam_ROK_N,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	HNRNPK	HGNC	ENSG00000165119				142	0	0	117	17	12.6866
ZCCHC6	0	genome.wustl.edu	37	9	88938202	88938202	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	9	88938202	88938202	C	A	SNP	ZCCHC6	ENST00000375963	human	ensembl	74_37	-1	known	missense	c.2463	p.E821D	0.136	NULL	pfam_PAP_assoc,pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_U1,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC6	HGNC	ENSG00000083223				94	0	0	78	11	12.3596
ENSG00000226668	0	genome.wustl.edu	37	9	95646204	95646204	+	RNA	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	9	95646204	95646204	C	T	SNP	ENSG00000226668	ENST00000411450	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	RP11-526D8.7	Clone_based_vega_gene	ENSG00000226668				101	0	0	82	20	19.6078
WNK2	0	genome.wustl.edu	37	9	95992150	95992150	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	9	95992150	95992150	C	T	SNP	WNK2	ENST00000297954	human	ensembl	74_37	+1	known	missense	c.854	p.T285I	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	WNK2	HGNC	ENSG00000165238				30	0	0	25	9	26.4706
DMRT3	0	genome.wustl.edu	37	9	990868	990868	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	9	990868	990868	C	A	SNP	DMRT3	ENST00000190165	human	ensembl	74_37	+1	known	missense	c.1282	p.R428S	0.970	NULL	pfam_DM_DNA-bd,pfam_DMA,superfamily_DM_DNA-bd,superfamily_UBA-like,smart_DM_DNA-bd,pfscan_DM_DNA-bd	-	no_errors	DMRT3	HGNC	ENSG00000064218				74	0	0	67	20	22.9885
DRP2	0	genome.wustl.edu	37	X	100505521	100505521	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	X	100505521	100505521	C	T	SNP	DRP2	ENST00000395209	human	ensembl	74_37	+1	known	silent	c.1650	p.A550	0.996	pfam_EF-hand_dom_typ2,pirsf_Dystrophin-related_2	pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_Znf_ZZ,pfam_Spectrin_repeat,pfam_WW_dom,superfamily_WW_dom,smart_Spectrin/alpha-actinin,smart_WW_dom,smart_Znf_ZZ,pirsf_Dystrophin-related_2,pfscan_WW_dom,pfscan_Znf_ZZ	-	no_errors	DRP2	HGNC	ENSG00000102385				95	0	0	104	6	5.45455
NXT2	0	genome.wustl.edu	37	X	108780202	108780202	+	Silent	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	X	108780202	108780202	G	A	SNP	NXT2	ENST00000218004	human	ensembl	74_37	+1	known	silent	c.132	p.P44	0.000	NULL	pfam_NTF2,pfscan_Nuclear_transport_factor_2_euk	-	no_errors	NXT2	HGNC	ENSG00000101888				37	0	0	30	12	28.5714
DOCK11	0	genome.wustl.edu	37	X	117788585	117788585	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	X	117788585	117788585	A	C	SNP	DOCK11	ENST00000276202	human	ensembl	74_37	+1	known	missense	c.4716	p.E1572D	1.000	NULL	pfam_DOCK_C,pfam_DOCK_C/D_N,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK11	HGNC	ENSG00000147251				102	1	0.970874	77	21	21.4286
PGRMC1	0	genome.wustl.edu	37	X	118370568	118370568	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	X	118370568	118370568	T	C	SNP	PGRMC1	ENST00000217971	human	ensembl	74_37	+1	known	missense	c.242	p.F81S	1.000	pfam_Cyt_B5-like_heme/steroid-bd,superfamily_Cyt_B5-like_heme/steroid-bd	pfam_Cyt_B5-like_heme/steroid-bd,superfamily_Cyt_B5-like_heme/steroid-bd	-	no_errors	PGRMC1	HGNC	ENSG00000101856				26	0	0	32	7	17.9487
SOWAHD	0	genome.wustl.edu	37	X	118893082	118893082	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	X	118893082	118893082	T	A	SNP	SOWAHD	ENST00000343905	human	ensembl	74_37	+1	known	missense	c.452	p.V151D	0.791	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	SOWAHD	HGNC	ENSG00000187808				24	0	0	22	5	18.5185
ENOX2	0	genome.wustl.edu	37	X	129801658	129801658	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	X	129801658	129801658	C	A	SNP	ENOX2	ENST00000338144	human	ensembl	74_37	-1	known	missense	c.840	p.E280D	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	ENOX2	HGNC	ENSG00000165675				151	0	0	163	25	13.2979
USP26	0	genome.wustl.edu	37	X	132160701	132160701	+	Silent	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	X	132160701	132160701	G	A	SNP	USP26	ENST00000370832	human	ensembl	74_37	-1	known	silent	c.1548	p.I516	0.798	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP26	HGNC	ENSG00000134588				333	0	0	219	69	23.9583
ZNF449	0	genome.wustl.edu	37	X	134494827	134494827	+	Silent	SNP	A	A	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	X	134494827	134494827	A	G	SNP	ZNF449	ENST00000339249	human	ensembl	74_37	+1	known	silent	c.1383	p.R461	1.000	pfscan_Znf_C2H2	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF449	HGNC	ENSG00000173275				194	0	0	159	27	14.5161
DDX26B	0	genome.wustl.edu	37	X	134715625	134715625	+	RNA	SNP	T	T	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	X	134715625	134715625	T	G	SNP	DDX26B	ENST00000481908	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	DDX26B	HGNC	ENSG00000165359				35	0	0	28	9	24.3243
MAP7D3	0	genome.wustl.edu	37	X	135310894	135310894	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	X	135310894	135310894	C	A	SNP	MAP7D3	ENST00000370663	human	ensembl	74_37	-1	known	missense	c.1720	p.G574C	0.000	pfam_MAP7	pfam_MAP7	-	no_errors	MAP7D3	HGNC	ENSG00000129680				94	0	0	66	15	18.5185
MAGEC3	0	genome.wustl.edu	37	X	140985386	140985386	+	Silent	SNP	A	A	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	X	140985386	140985386	A	G	SNP	MAGEC3	ENST00000536088	human	ensembl	74_37	+1	known	silent	c.948	p.P316	0.000	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEC3	HGNC	ENSG00000165509				135	0	0	157	10	5.98802
MAGEC1	0	genome.wustl.edu	37	X	140995299	140995299	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	X	140995299	140995299	C	A	SNP	MAGEC1	ENST00000285879	human	ensembl	74_37	+1	known	missense	c.2109	p.D703E	0.040	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEC1	HGNC	ENSG00000155495				159	0	0	111	41	26.9737
SPANXN2	0	genome.wustl.edu	37	X	142795423	142795423	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	X	142795423	142795423	C	A	SNP	SPANXN2	ENST00000370498	human	ensembl	74_37	-1	known	missense	c.255	p.E85D	0.006	pfam_SPANX_prot	pfam_SPANX_prot	-	no_errors	SPANXN2	HGNC	ENSG00000203924				576	0	0	423	145	25.5282
SLITRK2	0	genome.wustl.edu	37	X	144904104	144904104	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	X	144904104	144904104	T	G	SNP	SLITRK2	ENST00000370490	human	ensembl	74_37	+1	known	missense	c.161	p.V54G	1.000	smart_LRR-contain_N	pfam_Leu-rich_rpt,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK2	HGNC	ENSG00000185985				85	0	0	67	11	14.1026
AFF2	0	genome.wustl.edu	37	X	148038101	148038101	+	Silent	SNP	A	A	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	X	148038101	148038101	A	G	SNP	AFF2	ENST00000370460	human	ensembl	74_37	+1	known	silent	c.2526	p.T842	0.000	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF2	HGNC	ENSG00000155966				99	0	0	109	9	7.62712
SLC25A6	0	genome.wustl.edu	37	X	1505589	1505589	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	X	1505589	1505589	T	C	SNP	SLC25A6	ENST00000381401	human	ensembl	74_37	-1	known	missense	c.803	p.K268R	0.965	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier,prints_Aden_trnslctor,prints_Mit_uncoupling	-	no_errors	SLC25A6	HGNC	ENSG00000169100				235	0	0	334	18	5.11364
MAGEA10	0	genome.wustl.edu	37	X	151303514	151303514	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	X	151303514	151303514	T	A	SNP	MAGEA10	ENST00000244096	human	ensembl	74_37	-1	known	missense	c.579	p.E193D	0.001	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEA10	HGNC	ENSG00000124260				110	0	0	95	26	21.4876
PNMA5	0	genome.wustl.edu	37	X	152159455	152159455	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	X	152159455	152159455	C	T	SNP	PNMA5	ENST00000361887	human	ensembl	74_37	-1	known	missense	c.688	p.A230T	0.127	NULL	NULL	-	no_errors	PNMA5	HGNC	ENSG00000198883				111	0	0	132	16	10.8108
TREX2	0	genome.wustl.edu	37	X	152721108	152721108	+	Splice_Site	SNP	T	T	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	X	152721108	152721108	T	G	SNP	TREX2	ENST00000370232	human	ensembl	74_37	-1	known	splice_site	c.1-2	e1-2	0.966	-	-	-	no_errors	TREX2	HGNC	ENSG00000183479				102	1	0.970874	96	29	23.2
FAM58A	0	genome.wustl.edu	37	X	152853714	152853714	+	RNA	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	X	152853714	152853714	G	A	SNP	FAM58A	ENST00000276345	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.006	-	-	-	no_errors	FAM58A	HGNC	ENSG00000147382				36	0	0	34	10	22.7273
ABCD1	0	genome.wustl.edu	37	X	152991361	152991361	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	X	152991361	152991361	A	G	SNP	ABCD1	ENST00000218104	human	ensembl	74_37	+1	known	missense	c.640	p.N214D	1.000	pfam_ABC_Peroxi_TM,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom,tigrfam_FA_transporter	pfam_ABC_Peroxi_TM,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,tigrfam_FA_transporter	-	no_errors	ABCD1	HGNC	ENSG00000101986				82	0	0	91	21	18.75
PLXNA3	0	genome.wustl.edu	37	X	153696164	153696164	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	X	153696164	153696164	C	T	SNP	PLXNA3	ENST00000369682	human	ensembl	74_37	+1	known	missense	c.3640	p.R1214W	1.000	smart_IPT	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA3	HGNC	ENSG00000130827				60	0	0	46	4	8
CDKL5	0	genome.wustl.edu	37	X	18622574	18622574	+	Silent	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	X	18622574	18622574	G	A	SNP	CDKL5	ENST00000379989	human	ensembl	74_37	+1	known	silent	c.1530	p.E510	0.039	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDKL5	HGNC	ENSG00000008086				206	0	0	230	14	5.7377
GPR64	0	genome.wustl.edu	37	X	19031992	19031992	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	X	19031992	19031992	G	A	SNP	GPR64	ENST00000379869	human	ensembl	74_37	-1	known	missense	c.911	p.P304L	0.003	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR64	HGNC	ENSG00000173698				161	0	0	157	24	13.2597
DCAF8L1	0	genome.wustl.edu	37	X	27998016	27998016	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	X	27998016	27998016	T	C	SNP	DCAF8L1	ENST00000441525	human	ensembl	74_37	-1	known	missense	c.1436	p.D479G	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF8L1	HGNC	ENSG00000226372				41	0	0	36	8	18.1818
DMD	0	genome.wustl.edu	37	X	32360319	32360319	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	X	32360319	32360319	C	T	SNP	DMD	ENST00000357033	human	ensembl	74_37	-1	known	silent	c.5820	p.G1940	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_dom,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_dom,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947				67	0	0	65	16	19.7531
DMD	0	genome.wustl.edu	37	X	32466739	32466739	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	X	32466739	32466739	G	A	SNP	DMD	ENST00000357033	human	ensembl	74_37	-1	known	missense	c.3620	p.A1207V	0.984	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_dom,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_dom,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947				75	0	0	47	4	7.84314
DYNLT3	0	genome.wustl.edu	37	X	37701055	37701055	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	X	37701055	37701055	C	G	SNP	DYNLT3	ENST00000378581	human	ensembl	74_37	-1	known	missense	c.176	p.G59A	1.000	pfam_Tctex	pfam_Tctex	-	no_errors	DYNLT3	HGNC	ENSG00000165169				57	0	0	24	11	31.4286
BCOR	0	genome.wustl.edu	37	X	39922031	39922031	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	X	39922031	39922031	C	A	SNP	BCOR	ENST00000378444	human	ensembl	74_37	-1	known	missense	c.4141	p.G1381W	0.992	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	BCOR	HGNC	ENSG00000183337				46	0	0	38	3	7.31707
USP11	0	genome.wustl.edu	37	X	47101540	47101540	+	Silent	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	X	47101540	47101540	C	T	SNP	USP11	ENST00000218348	human	ensembl	74_37	+1	known	silent	c.1368	p.D456	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfam_Pept_C19_DUSP,smart_Pept_C19_DUSP,pfscan_Peptidase_C19/C67	-	no_errors	USP11	HGNC	ENSG00000102226				37	0	0	28	9	24.3243
KCND1	0	genome.wustl.edu	37	X	48826046	48826046	+	Silent	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	X	48826046	48826046	G	A	SNP	KCND1	ENST00000218176	human	ensembl	74_37	-1	known	silent	c.633	p.R211	0.000	NULL	pfam_K_chnl_volt-dep_Kv4_C,pfam_T1-type_BTB,pfam_Ion_trans_dom,pfam_Shal-type,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv4,prints_K_chnl_volt-dep_Kv4.1,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCND1	HGNC	ENSG00000102057				23	0	0	23	11	32.3529
GRIPAP1	0	genome.wustl.edu	37	X	48839705	48839705	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	X	48839705	48839705	G	A	SNP	GRIPAP1	ENST00000376441	human	ensembl	74_37	-1	known	nonsense	c.1420	p.R474*	0.998	superfamily_Prefoldin	superfamily_Prefoldin	-	no_errors	GRIPAP1	HGNC	ENSG00000068400				79	0	0	84	44	34.375
TFE3	0	genome.wustl.edu	37	X	48891239	48891239	+	Splice_Site	SNP	A	A	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	X	48891239	48891239	A	G	SNP	TFE3	ENST00000315869	human	ensembl	74_37	-1	known	splice_site	c.1060+2	e7+2	1.000	-	-	-	no_errors	TFE3	HGNC	ENSG00000068323				57	0	0	47	16	25.3968
PRAF2	0	genome.wustl.edu	37	X	48931588	48931588	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	X	48931588	48931588	G	A	SNP	PRAF2	ENST00000376390	human	ensembl	74_37	-1	known	missense	c.59	p.A20V	0.898	pfam_Prenylated_rab_accept_PRA1	pfam_Prenylated_rab_accept_PRA1	-	no_errors	PRAF2	HGNC	ENSG00000243279				27	0	0	30	5	14.2857
RIBC1	0	genome.wustl.edu	37	X	53455530	53455530	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	X	53455530	53455530	C	T	SNP	RIBC1	ENST00000375327	human	ensembl	74_37	+1	known	nonsense	c.499	p.Q167*	0.468	pfam_RIB43A	pfam_RIB43A	-	no_errors	RIBC1	HGNC	ENSG00000158423				26	0	0	33	6	15.3846
PHF8	0	genome.wustl.edu	37	X	54069132	54069132	+	Silent	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	X	54069132	54069132	G	A	SNP	PHF8	ENST00000357988	human	ensembl	74_37	-1	known	silent	c.138	p.C46	1.000	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	pfam_JmjC_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_JmjC_dom,pfscan_JmjC_dom,pfscan_Znf_PHD-finger	-	no_errors	PHF8	HGNC	ENSG00000172943				33	0	0	27	9	25
WNK3	0	genome.wustl.edu	37	X	54275628	54275628	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	X	54275628	54275628	C	T	SNP	WNK3	ENST00000354646	human	ensembl	74_37	-1	known	missense	c.3153	p.M1051I	0.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	WNK3	HGNC	ENSG00000196632				62	0	0	52	6	10.3448
MAGED2	0	genome.wustl.edu	37	X	54837342	54837342	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	X	54837342	54837342	T	C	SNP	MAGED2	ENST00000218439	human	ensembl	74_37	+1	known	missense	c.626	p.L209P	1.000	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGED2	HGNC	ENSG00000102316				41	0	0	30	14	31.8182
MAGEH1	0	genome.wustl.edu	37	X	55479097	55479097	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	X	55479097	55479097	C	T	SNP	MAGEH1	ENST00000342972	human	ensembl	74_37	+1	known	missense	c.290	p.A97V	0.010	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEH1	HGNC	ENSG00000187601				78	0	0	70	15	17.6471
USP51	0	genome.wustl.edu	37	X	55514661	55514661	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	X	55514661	55514661	C	T	SNP	USP51	ENST00000500968	human	ensembl	74_37	-1	known	missense	c.712	p.V238I	0.993	pfam_Znf_UBP,pfscan_Znf_UBP	pfam_Peptidase_C19/C67,pfam_Znf_UBP,pfscan_Znf_UBP,pfscan_Peptidase_C19/C67	-	no_errors	USP51	HGNC	ENSG00000247746				86	0	0	58	8	12.1212
RRAGB	0	genome.wustl.edu	37	X	55748712	55748712	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	X	55748712	55748712	G	A	SNP	RRAGB	ENST00000262850	human	ensembl	74_37	+1	known	missense	c.220	p.A74T	1.000	pfam_Gtr1_RagA,superfamily_P-loop_NTPase	pfam_Gtr1_RagA,pfam_Small_GTPase,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase	-	no_errors	RRAGB	HGNC	ENSG00000083750				115	0	0	83	6	6.74157
AMER1	0	genome.wustl.edu	37	X	63411068	63411068	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	X	63411068	63411068	G	T	SNP	AMER1	ENST00000330258	human	ensembl	74_37	-1	known	missense	c.2099	p.P700H	1.000	NULL	pfam_Uncharacterised_FAM123	-	no_errors	AMER1	HGNC	ENSG00000184675				74	0	0	63	14	18.1818
KIF4A	0	genome.wustl.edu	37	X	69626771	69626771	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	X	69626771	69626771	T	C	SNP	KIF4A	ENST00000374403	human	ensembl	74_37	+1	known	missense	c.3101	p.F1034S	0.998	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF4A	HGNC	ENSG00000090889				97	0	0	51	16	23.8806
DLG3	0	genome.wustl.edu	37	X	69669640	69669640	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	X	69669640	69669640	T	A	SNP	DLG3	ENST00000194900	human	ensembl	74_37	+1	known	missense	c.688	p.L230M	0.998	pfam_PDZ,superfamily_PDZ,smart_PDZ,pirsf_M-assoc_guanylate_kinase,pfscan_PDZ	pfam_GK/Ca_channel_bsu,pfam_PDZ,pfam_PDZ_assoc,pfam_MAGUK_PEST_N,pfam_SH3_domain,pfam_SH3_2,superfamily_P-loop_NTPase,superfamily_SH3_domain,superfamily_PDZ,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pirsf_M-assoc_guanylate_kinase,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like	-	no_errors	DLG3	HGNC	ENSG00000082458				45	0	0	38	7	15.5556
MED12	0	genome.wustl.edu	37	X	70349689	70349689	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	X	70349689	70349689	G	A	SNP	MED12	ENST00000333646	human	ensembl	74_37	+1	known	missense	c.3851	p.R1284H	1.000	NULL	pfam_Mediator_Med12_LCEWAV,pfam_Mediator_Med12_catenin-bd,pfam_Mediator_Med12	-	no_errors	MED12	HGNC	ENSG00000184634				32	0	0	31	9	22.5
GPR143	0	genome.wustl.edu	37	X	9693832	9693832	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	X	9693832	9693832	T	C	SNP	GPR143	ENST00000380929	human	ensembl	74_37	-1	known	missense	c.1229	p.N410S	0.000	pfam_Ocular_alb1	pfam_Ocular_alb1,pfam_GPCR_2_secretin-like,prints_Ocular_alb1	-	no_errors	GPR143	HGNC	ENSG00000101850				65	0	0	42	9	17.6471
PCDH19	0	genome.wustl.edu	37	X	99663536	99663536	+	Silent	SNP	G	G	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	X	99663536	99663536	G	A	SNP	PCDH19	ENST00000373034	human	ensembl	74_37	-1	known	silent	c.60	p.A20	0.378	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH19	HGNC	ENSG00000165194				16	0	0	16	7	30.4348
HIAT1	0	genome.wustl.edu	37	1	100534121	100534122	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	100534121	100534122	-	T	INS	HIAT1	ENST00000370152	human	ensembl	74_37	+1	known	frame_shift_ins	c.798_799	p.L268fs	1.000:1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Tet-R_TetA/multi-R_MdtG	-	no_errors	HIAT1	HGNC	ENSG00000156875				107	0	0	60	14	18.9189
SLC16A4	0	genome.wustl.edu	37	1	110906426	110906427	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	110906426	110906427	-	A	INS	SLC16A4	ENST00000369779	human	ensembl	74_37	-1	known	frame_shift_ins	c.1426_1425	p.V475fs	0.998:0.998	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A4	HGNC	ENSG00000168679				123	1	0.806452	73	5	6.41026
RSBN1	0	genome.wustl.edu	37	1	114354926	114354926	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	114354926	114354926	C	-	DEL	RSBN1	ENST00000261441	human	ensembl	74_37	-1	known	frame_shift_del	c.109	p.A37fs	1.000	NULL	NULL	-	no_errors	RSBN1	HGNC	ENSG00000081019				104	0	0	115	21	15.4412
VPS13D	0	genome.wustl.edu	37	1	12335954	12335954	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	12335954	12335954	C	-	DEL	VPS13D	ENST00000358136	human	ensembl	74_37	+1	known	frame_shift_del	c.2309	p.L772fs	1.000	NULL	pfam_VPSAP_dom,pfam_UBA/Ts_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	VPS13D	HGNC	ENSG00000048707				122	0	0	122	22	15.2778
LOC101927345	0	genome.wustl.edu	37	1	143378148	143378148	+	RNA	DEL	A	A	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	143378148	143378148	A	-	DEL	LOC101927345	ENST00000428624	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.006	-	-	-	no_errors	RP11-435B5.5	Clone_based_vega_gene	ENSG00000238261				131	0	0	129	12	8.51064
ADAMTSL4	0	genome.wustl.edu	37	1	150530506	150530506	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	150530506	150530506	G	-	DEL	ADAMTSL4	ENST00000369039	human	ensembl	74_37	+1	known	frame_shift_del	c.2332	p.G780fs	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt	-	no_errors	ADAMTSL4	HGNC	ENSG00000143382				152	0	0	180	18	9.09091
TCHH	0	genome.wustl.edu	37	1	152086556	152086556	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	152086556	152086556	T	-	DEL	TCHH	ENST00000368804	human	ensembl	74_37	-1	known	frame_shift_del	c.1	p.M1fs	1.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom	-	no_errors	TCHH	HGNC	ENSG00000159450				64	0	0	32	6	15.7895
INTS3	0	genome.wustl.edu	37	1	153730152	153730153	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	153730152	153730153	-	G	INS	INTS3	ENST00000318967	human	ensembl	74_37	+1	known	frame_shift_ins	c.1062_1063	p.V355fs	1.000:1.000	pfam_Int_cplx_su3	pfam_Int_cplx_su3	-	no_errors	INTS3	HGNC	ENSG00000143624				108	0	0	95	22	18.8034
PYGO2	0	genome.wustl.edu	37	1	154932071	154932071	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	154932071	154932071	G	-	DEL	PYGO2	ENST00000368457	human	ensembl	74_37	-1	known	frame_shift_del	c.405	p.F136fs	0.991	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	PYGO2	HGNC	ENSG00000163348				80	0	0	57	17	22.973
NES	0	genome.wustl.edu	37	1	156642803	156642804	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	156642803	156642804	-	G	INS	NES	ENST00000368223	human	ensembl	74_37	-1	known	frame_shift_ins	c.1177_1176	p.T392fs	0.034:0.087	NULL	pfam_IF	-	no_errors	NES	HGNC	ENSG00000132688				211	0	0	225	49	17.8832
SEC16B	0	genome.wustl.edu	37	1	177927333	177927333	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	177927333	177927333	G	-	DEL	SEC16B	ENST00000308284	human	ensembl	74_37	-1	known	frame_shift_del	c.1299	p.S434fs	0.033	NULL	NULL	-	no_errors	SEC16B	HGNC	ENSG00000120341				49	0	0	38	8	17.3913
ABL2	0	genome.wustl.edu	37	1	179077893	179077894	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	179077893	179077894	-	T	INS	ABL2	ENST00000502732	human	ensembl	74_37	-1	known	frame_shift_ins	c.2509_2508	p.S836fs	1.000:1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_F-actin_binding,pfam_Prot_kinase_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,pfam_SH3-like_bac-type,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_F-actin_binding,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	ABL2	HGNC	ENSG00000143322				138	0	0	108	13	10.7438
TDRD5	0	genome.wustl.edu	37	1	179620102	179620102	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	179620102	179620102	T	-	DEL	TDRD5	ENST00000444136	human	ensembl	74_37	+1	known	frame_shift_del	c.1901	p.L636fs	1.000	NULL	pfam_Tudor,smart_Tudor,pfscan_Tudor	-	no_errors	TDRD5	HGNC	ENSG00000162782				153	0	0	94	14	12.963
EDEM3	0	genome.wustl.edu	37	1	184686655	184686676	+	Frame_Shift_Del	DEL	ATGGGGTATATTTTCTTACTTT	ATGGGGTATATTTTCTTACTTT	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	ATGGGGTATATTTTCTTACTTT	ATGGGGTATATTTTCTTACTTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	184686655	184686676	ATGGGGTATATTTTCTTACTTT	-	DEL	EDEM3	ENST00000318130	human	ensembl	74_37	-1	known	frame_shift_del	c.1264_1243	p.K415fs	0.000:0.000:0.000:0.000:0.003:0.004:0.005:0.009:0.002:0.000:0.000:0.000:0.023:0.984:0.999:1.000:1.000:1.000:1.000:1.000:1.000:1.000	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47,prints_Glyco_hydro_47	pfam_Glyco_hydro_47,pfam_Protease-assoc_domain,superfamily_Glyco_hydro_47,prints_Glyco_hydro_47	-	no_errors	EDEM3	HGNC	ENSG00000116406				112	0	0	64	10	13.5135
CFHR3	0	genome.wustl.edu	37	1	196762526	196762526	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	196762526	196762526	A	-	DEL	CFHR3	ENST00000367425	human	ensembl	74_37	+1	known	frame_shift_del	c.876	p.T294fs	0.000	superfamily_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CFHR3	HGNC	ENSG00000116785				66	0	0	34	8	19.0476
PLEKHA6	0	genome.wustl.edu	37	1	204228411	204228411	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	204228411	204228411	C	-	DEL	PLEKHA6	ENST00000272203	human	ensembl	74_37	-1	known	frame_shift_del	c.982	p.V328fs	0.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHA6	HGNC	ENSG00000143850				63	0	0	53	11	17.1875
OR14C36	0	genome.wustl.edu	37	1	248512384	248512384	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	248512384	248512384	T	-	DEL	OR14C36	ENST00000317861	human	ensembl	74_37	+1	known	frame_shift_del	c.308	p.F105fs	0.004	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR14C36	HGNC	ENSG00000177174				64	0	0	63	12	16
MARCKSL1	0	genome.wustl.edu	37	1	32800539	32800540	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	32800539	32800540	-	G	INS	MARCKSL1	ENST00000329421	human	ensembl	74_37	-1	known	frame_shift_ins	c.247_246	p.K82fs	1.000:1.000	pfam_MARCKS	pfam_MARCKS,prints_MARCKS	-	no_errors	MARCKSL1	HGNC	ENSG00000175130				87	0	0	107	32	23.0216
KIAA1522	0	genome.wustl.edu	37	1	33233495	33233495	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	33233495	33233495	C	-	DEL	KIAA1522	ENST00000401073	human	ensembl	74_37	+1	known	frame_shift_del	c.343	p.H117fs	0.980	NULL	NULL	-	no_errors	KIAA1522	HGNC	ENSG00000162522				103	0	0	116	17	12.782
DLGAP3	0	genome.wustl.edu	37	1	35365852	35365852	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	35365852	35365852	C	-	DEL	DLGAP3	ENST00000235180	human	ensembl	74_37	-1	known	frame_shift_del	c.1130	p.G377fs	1.000	NULL	pfam_GKAP	-	no_errors	DLGAP3	HGNC	ENSG00000116544				111	0	0	142	13	8.3871
ZMYM4	0	genome.wustl.edu	37	1	35846960	35846960	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	35846960	35846960	A	-	DEL	ZMYM4	ENST00000314607	human	ensembl	74_37	+1	known	frame_shift_del	c.1282	p.K430fs	1.000	NULL	pfam_DUF3504,pfam_Znf_MYM,smart_TRASH_dom	-	no_errors	ZMYM4	HGNC	ENSG00000146463				81	0	0	55	10	15.3846
CCDC23	0	genome.wustl.edu	37	1	43282114	43282115	+	Frame_Shift_Del	DEL	TC	TC	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	TC	TC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	43282114	43282115	TC	-	DEL	CCDC23	ENST00000372521	human	ensembl	74_37	-1	known	frame_shift_del	c.102_101	p.R34fs	1.000:1.000	NULL	NULL	-	no_errors	CCDC23	HGNC	ENSG00000177868				221	0	0	203	18	8.1448
MED8	0	genome.wustl.edu	37	1	43850143	43850143	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	43850143	43850143	T	-	DEL	MED8	ENST00000290663	human	ensembl	74_37	-1	known	frame_shift_del	c.884	p.N295fs	0.000	NULL	pfam_Mediatior_Med8_fun/met	-	no_errors	MED8	HGNC	ENSG00000159479				25	0	0	11	5	31.25
PTCH2	0	genome.wustl.edu	37	1	45288194	45288194	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	45288194	45288194	G	-	DEL	PTCH2	ENST00000372192	human	ensembl	74_37	-1	known	frame_shift_del	c.3505	p.L1169fs	0.616	NULL	pfam_Patched,pfscan_SSD,tigrfam_TM_rcpt_patched	-	no_errors	PTCH2	HGNC	ENSG00000117425				88	0	0	76	21	21.6495
RPL22	0	genome.wustl.edu	37	1	6257785	6257785	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	6257785	6257785	T	-	DEL	RPL22	ENST00000234875	human	ensembl	74_37	-1	known	frame_shift_del	c.44	p.K15fs	1.000	pfam_Ribosomal_L22e	pfam_Ribosomal_L22e	-	no_errors	RPL22	HGNC	ENSG00000116251				59	0	0	50	6	10.7143
GBP7	0	genome.wustl.edu	37	1	89613321	89613322	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	1	89613321	89613322	-	C	INS	GBP7	ENST00000294671	human	ensembl	74_37	-1	known	frame_shift_ins	c.1294_1293	p.H431fs	0.980:0.994	pfam_Guanylate-bd_C,superfamily_Guanylate-bd_C	pfam_Guanylate-bd_N,pfam_Guanylate-bd_C,superfamily_Guanylate-bd_C,superfamily_P-loop_NTPase	-	no_errors	GBP7	HGNC	ENSG00000213512				214	0	0	187	31	14.2202
SORCS1	0	genome.wustl.edu	37	10	108431121	108431122	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	10	108431121	108431122	-	C	INS	SORCS1	ENST00000344440	human	ensembl	74_37	-1	known	frame_shift_ins	c.2063_2062	p.E688fs	1.000:1.000	smart_VPS10	pfam_PKD_dom,superfamily_PKD_dom,smart_VPS10,pfscan_PKD_dom	-	no_errors	SORCS1	HGNC	ENSG00000108018				199	0	0	128	19	12.9252
ACSL5	0	genome.wustl.edu	37	10	114169370	114169371	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	10	114169370	114169371	-	C	INS	ACSL5	ENST00000356116	human	ensembl	74_37	+1	known	frame_shift_ins	c.806_807	p.F271fs	1.000:0.978	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSL5	HGNC	ENSG00000197142				213	0	0	163	26	13.7566
PDZD8	0	genome.wustl.edu	37	10	119042897	119042898	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	10	119042897	119042898	-	T	INS	PDZD8	ENST00000334464	human	ensembl	74_37	-1	known	frame_shift_ins	c.3347_3346	p.I1116fs	0.215:0.572	NULL	pfam_PDZ,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_PDZ,smart_PDZ,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_PDZ,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	PDZD8	HGNC	ENSG00000165650				113	0	0	71	11	13.4146
INPP5F	0	genome.wustl.edu	37	10	121556339	121556339	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	10	121556339	121556339	C	-	DEL	INPP5F	ENST00000361976	human	ensembl	74_37	+1	known	frame_shift_del	c.782	p.P263fs	1.000	pfam_Syja_N,pfscan_Syja_N	pfam_Syja_N,pfam_Inositol_phosphatase,pfscan_Syja_N	-	no_errors	INPP5F	HGNC	ENSG00000198825				90	0	0	63	16	20.2532
WDR11	0	genome.wustl.edu	37	10	122622314	122622315	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	10	122622314	122622315	-	A	INS	WDR11	ENST00000263461	human	ensembl	74_37	+1	known	frame_shift_ins	c.594_595	p.V200fs	1.000:1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	WDR11	HGNC	ENSG00000120008				286	0	0	253	52	17.0492
CUBN	0	genome.wustl.edu	37	10	17113554	17113554	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	10	17113554	17113554	A	-	DEL	CUBN	ENST00000377833	human	ensembl	74_37	-1	known	frame_shift_del	c.2496	p.P833fs	0.996	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_CUB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_CUB_dom,pfscan_CUB_dom,pfscan_EG-like_dom	-	no_errors	CUBN	HGNC	ENSG00000107611				109	1	0.909091	81	15	15.625
KIAA1217	0	genome.wustl.edu	37	10	24669902	24669902	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	10	24669902	24669902	G	-	DEL	KIAA1217	ENST00000376454	human	ensembl	74_37	+1	known	frame_shift_del	c.459	p.D155fs	1.000	NULL	pfam_AIP3_C	-	no_errors	KIAA1217	HGNC	ENSG00000120549				80	0	0	80	5	5.88235
PFKP	0	genome.wustl.edu	37	10	3174635	3174636	+	Splice_Site	INS	-	-	GA			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	10	3174635	3174636	-	GA	INS	PFKP	ENST00000381125	human	ensembl	74_37	+1	known	splice_site_ins	c.1910+2_1910+1	e18+2	0.998:0.331	-	-	-	no_errors	PFKP	HGNC	ENSG00000067057				117	0	0	104	14	11.8644
ASAH2	0	genome.wustl.edu	37	10	52003089	52003089	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	10	52003089	52003089	T	-	DEL	ASAH2	ENST00000395526	human	ensembl	74_37	-1	known	frame_shift_del	c.383	p.Q128fs	1.000	pfam_Ceramidase_alk	pfam_Ceramidase_alk	-	no_errors	ASAH2	HGNC	ENSG00000188611				151	0	0	113	25	18.1159
CHST3	0	genome.wustl.edu	37	10	73767317	73767317	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	10	73767317	73767317	G	-	DEL	CHST3	ENST00000373115	human	ensembl	74_37	+1	known	frame_shift_del	c.528	p.G178fs	0.047	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,pirsf_Carbohydrate_sulfotransferase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,pirsf_Carbohydrate_sulfotransferase	-	no_errors	CHST3	HGNC	ENSG00000122863				26	0	0	39	4	9.30233
LARP4B	0	genome.wustl.edu	37	10	890939	890939	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	10	890939	890939	T	-	DEL	LARP4B	ENST00000316157	human	ensembl	74_37	-1	known	frame_shift_del	c.487	p.T163fs	1.000	pfam_Lupus_La_RNA-bd,smart_Lupus_La_RNA-bd,pfscan_Lupus_La_RNA-bd	pfam_Lupus_La_RNA-bd,smart_Lupus_La_RNA-bd,pfscan_Lupus_La_RNA-bd	-	no_errors	LARP4B	HGNC	ENSG00000107929				118	0	0	70	19	21.3483
BTAF1	0	genome.wustl.edu	37	10	93767970	93767970	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	10	93767970	93767970	A	-	DEL	BTAF1	ENST00000265990	human	ensembl	74_37	+1	known	frame_shift_del	c.3751	p.K1252fs	1.000	superfamily_ARM-type_fold,superfamily_P-loop_NTPase	pfam_DUF3535,pfam_SNF2_N,pfam_HEAT,pfam_Helicase_C,superfamily_ARM-type_fold,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	BTAF1	HGNC	ENSG00000095564				160	0	0	79	29	26.8519
TM9SF3	0	genome.wustl.edu	37	10	98336475	98336475	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	10	98336475	98336475	T	-	DEL	TM9SF3	ENST00000371142	human	ensembl	74_37	-1	known	frame_shift_del	c.214	p.S72fs	1.000	pfam_EMP70	pfam_EMP70	-	no_errors	TM9SF3	HGNC	ENSG00000077147				172	0	0	126	15	10.6383
HEPACAM	0	genome.wustl.edu	37	11	124794951	124794951	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	11	124794951	124794951	C	-	DEL	HEPACAM	ENST00000298251	human	ensembl	74_37	-1	known	frame_shift_del	c.100	p.V34fs	1.000	NULL	pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	HEPACAM	HGNC	ENSG00000165478				41	0	0	43	10	18.8679
HPS5	0	genome.wustl.edu	37	11	18303690	18303690	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	11	18303690	18303690	G	-	DEL	HPS5	ENST00000349215	human	ensembl	74_37	-1	known	frame_shift_del	c.3136	p.Q1046fs	0.339	pirsf_BLOC-2_complex_Hps5_subunit	superfamily_WD40_repeat_dom,pirsf_BLOC-2_complex_Hps5_subunit	-	no_errors	HPS5	HGNC	ENSG00000110756				131	0	0	124	7	5.34351
NAV2	0	genome.wustl.edu	37	11	20127169	20127169	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	11	20127169	20127169	G	-	DEL	NAV2	ENST00000396087	human	ensembl	74_37	+1	known	frame_shift_del	c.6914	p.V2306fs	1.000	superfamily_P-loop_NTPase	pfam_CH-domain,superfamily_CH-domain,superfamily_P-loop_NTPase,smart_CH-domain,smart_AAA+_ATPase,pfscan_CH-domain	-	no_errors	NAV2	HGNC	ENSG00000166833				80	0	0	85	10	10.5263
MUC15	0	genome.wustl.edu	37	11	26587427	26587427	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	11	26587427	26587427	T	-	DEL	MUC15	ENST00000436318	human	ensembl	74_37	-1	known	frame_shift_del	c.60	p.K20fs	0.000	NULL	NULL	-	no_errors	MUC15	HGNC	ENSG00000169550				66	0	0	42	11	20.7547
NAP1L4	0	genome.wustl.edu	37	11	2991166	2991167	+	Splice_Site	INS	-	-	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	11	2991166	2991167	-	A	INS	NAP1L4	ENST00000380542	human	ensembl	74_37	-1	known	splice_site_ins	c.403-3_403-2	e6-2	1.000:0.009	-	-	-	no_errors	NAP1L4	HGNC	ENSG00000205531				74	0	0	46	8	14.8148
PAX6	0	genome.wustl.edu	37	11	31812317	31812317	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	11	31812317	31812317	G	-	DEL	PAX6	ENST00000379107	human	ensembl	74_37	-1	known	frame_shift_del	c.1166	p.P389fs	1.000	NULL	pfam_Paired_dom,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Paired_dom,smart_Homeobox_dom,prints_Paired_dom,pfscan_Homeobox_dom,pfscan_Paired_dom	-	no_errors	PAX6	HGNC	ENSG00000007372				84	0	0	66	6	8.33333
ALX4	0	genome.wustl.edu	37	11	44286624	44286624	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	11	44286624	44286624	G	-	DEL	ALX4	ENST00000329255	human	ensembl	74_37	-1	known	frame_shift_del	c.1016	p.P339fs	0.977	NULL	pfam_Homeobox_dom,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_OAR_dom,pfscan_Homeobox_dom	-	no_errors	ALX4	HGNC	ENSG00000052850				52	0	0	52	11	17.4603
TRIM51	0	genome.wustl.edu	37	11	55653610	55653610	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	11	55653610	55653610	A	-	DEL	TRIM51	ENST00000449290	human	ensembl	74_37	+1	known	frame_shift_del	c.423	p.M144fs	0.001	NULL	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM51	HGNC	ENSG00000124900				60	0	0	30	6	16.6667
SLC43A1	0	genome.wustl.edu	37	11	57281506	57281508	+	In_Frame_Del	DEL	AGA	AGA	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	11	57281506	57281508	AGA	-	DEL	SLC43A1	ENST00000278426	human	ensembl	74_37	-1	known	in_frame_del	c.79_77	p.F26in_frame_del	1.000:1.000:1.000	superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC43A1	HGNC	ENSG00000149150				22	0	0	7	3	30
DTX4	0	genome.wustl.edu	37	11	58962826	58962827	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	11	58962826	58962827	-	C	INS	DTX4	ENST00000227451	human	ensembl	74_37	+1	known	frame_shift_ins	c.1520_1521	p.G510fs	1.000:1.000	NULL	pfam_WWE-dom,pfam_Znf_C3HC4_RING-type,smart_WWE-dom_subgr,smart_Znf_RING,pfscan_WWE-dom,pfscan_Znf_RING	-	no_errors	DTX4	HGNC	ENSG00000110042				54	0	0	51	7	12.069
MYRF	0	genome.wustl.edu	37	11	61533569	61533569	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	11	61533569	61533569	C	-	DEL	MYRF	ENST00000278836	human	ensembl	74_37	+1	known	frame_shift_del	c.274	p.P93fs	0.999	NULL	pfam_NDT80_DNA-bd_dom,superfamily_p53-like_TF_DNA-bd	-	no_errors	MYRF	HGNC	ENSG00000124920				40	0	0	36	8	18.1818
PLCB3	0	genome.wustl.edu	37	11	64032517	64032517	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	11	64032517	64032517	C	-	DEL	PLCB3	ENST00000279230	human	ensembl	74_37	+1	known	frame_shift_del	c.2747	p.R918fs	0.006	pirsf_PLC-beta	pirsf_PLC-beta,pfam_PLC-beta_C,pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,pfam_PLC-beta_CS,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,prints_Pinositol_PLipase_C,pfscan_C2_dom,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCB3	HGNC	ENSG00000149782				16	0	0	13	5	27.7778
KCNK4	0	genome.wustl.edu	37	11	64064615	64064615	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	11	64064615	64064615	C	-	DEL	KCNK4	ENST00000394525	human	ensembl	74_37	+1	known	frame_shift_del	c.338	p.T113fs	1.000	pfam_2pore_dom_K_chnl_dom,prints_2pore_dom_K_chnl	pfam_2pore_dom_K_chnl_dom,prints_2pore_dom_K_chnl_TRAAK,prints_2pore_dom_K_chnl_TREK,prints_2pore_dom_K_chnl,prints_2pore_dom_K_chnl_TASK	-	no_errors	KCNK4	HGNC	ENSG00000182450				79	0	0	89	20	18.3486
RPS6KA4	0	genome.wustl.edu	37	11	64138941	64138941	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	11	64138941	64138941	C	-	DEL	RPS6KA4	ENST00000334205	human	ensembl	74_37	+1	known	frame_shift_del	c.2308	p.S772fs	0.292	pirsf_Ribosomal_S6_kinase_II	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_dom	-	no_errors	RPS6KA4	HGNC	ENSG00000162302				9	0	0	12	3	20
MALAT1	0	genome.wustl.edu	37	11	65269498	65269498	+	RNA	DEL	T	T	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	11	65269498	65269498	T	-	DEL	MALAT1	ENST00000534336	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	MALAT1	HGNC	ENSG00000251562				42	0	0	28	16	36.3636
DCHS1	0	genome.wustl.edu	37	11	6662141	6662142	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	11	6662141	6662142	-	G	INS	DCHS1	ENST00000299441	human	ensembl	74_37	-1	known	frame_shift_ins	c.704_703	p.R235fs	0.999:0.606	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	DCHS1	HGNC	ENSG00000166341				189	0	0	160	24	13.0435
CEP57	0	genome.wustl.edu	37	11	95555113	95555113	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	11	95555113	95555113	A	-	DEL	CEP57	ENST00000325542	human	ensembl	74_37	+1	known	frame_shift_del	c.778	p.K262fs	1.000	pfam_Cep57_MT-bd_dom	pfam_Cep57_MT-bd_dom	-	no_errors	CEP57	HGNC	ENSG00000166037				73	0	0	51	14	21.5385
C12orf45	0	genome.wustl.edu	37	12	105388460	105388460	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	12	105388460	105388460	A	-	DEL	C12orf45	ENST00000552951	human	ensembl	74_37	+1	known	frame_shift_del	c.544	p.K184fs	0.950	NULL	NULL	-	no_errors	C12orf45	HGNC	ENSG00000151131				58	0	0	47	11	18.9655
NUAK1	0	genome.wustl.edu	37	12	106466564	106466564	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	12	106466564	106466564	A	-	DEL	NUAK1	ENST00000261402	human	ensembl	74_37	-1	known	frame_shift_del	c.637	p.C213fs	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	NUAK1	HGNC	ENSG00000074590				87	0	0	59	7	10.6061
IFT81	0	genome.wustl.edu	37	12	110630501	110630501	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	12	110630501	110630501	A	-	DEL	IFT81	ENST00000242591	human	ensembl	74_37	+1	known	frame_shift_del	c.1547	p.K517fs	1.000	NULL	NULL	-	no_errors	IFT81	HGNC	ENSG00000122970				174	0	0	83	5	5.68182
MLXIP	0	genome.wustl.edu	37	12	122619803	122619804	+	Frame_Shift_Del	DEL	AT	AT	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	AT	AT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	12	122619803	122619804	AT	-	DEL	MLXIP	ENST00000319080	human	ensembl	74_37	+1	known	frame_shift_del	c.1765_1766	p.M589fs	0.996:1.000	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	MLXIP	HGNC	ENSG00000175727				39	0	0	61	6	8.95522
RAD51AP1	0	genome.wustl.edu	37	12	4653063	4653063	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	12	4653063	4653063	A	-	DEL	RAD51AP1	ENST00000228843	human	ensembl	74_37	+1	known	frame_shift_del	c.202	p.R70fs	0.997	NULL	NULL	-	no_errors	RAD51AP1	HGNC	ENSG00000111247				58	0	0	44	10	18.5185
AKAP3	0	genome.wustl.edu	37	12	4736154	4736154	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	12	4736154	4736154	G	-	DEL	AKAP3	ENST00000228850	human	ensembl	74_37	-1	known	frame_shift_del	c.1914	p.R639fs	0.000	pfam_AKAP_110_C,smart_AKAP_110	pfam_AKAP_110_C,pfam_RII_binding_1,smart_AKAP_110	-	no_errors	AKAP3	HGNC	ENSG00000111254				63	0	0	48	9	15.7895
TARBP2	0	genome.wustl.edu	37	12	53898184	53898184	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	12	53898184	53898184	C	-	DEL	TARBP2	ENST00000266987	human	ensembl	74_37	+1	known	frame_shift_del	c.426	p.M145fs	0.994	NULL	pfam_dsRNA-bd_dom,smart_dsRNA-bd_dom,pfscan_dsRNA-bd_dom	-	no_errors	TARBP2	HGNC	ENSG00000139546				67	0	0	75	15	16.6667
DGKA	0	genome.wustl.edu	37	12	56347514	56347514	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	12	56347514	56347514	C	-	DEL	DGKA	ENST00000331886	human	ensembl	74_37	+1	known	frame_shift_del	c.2170	p.R726fs	0.749	NULL	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_EF_hand_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,pfscan_EF_hand_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	DGKA	HGNC	ENSG00000065357				113	0	0	89	23	20.5357
USP5	0	genome.wustl.edu	37	12	6973278	6973278	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	12	6973278	6973278	C	-	DEL	USP5	ENST00000229268	human	ensembl	74_37	+1	known	frame_shift_del	c.2163	p.P723fs	0.547	pfam_Peptidase_C19/C67,superfamily_UBA-like,pirsf_Ubiquitinyl_hydrolase,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfam_UBA/Ts_N,pfam_Znf_UBP,superfamily_UBA-like,smart_Znf_UBP,smart_UBA/transl_elong_EF1B_N_euk,pirsf_Ubiquitinyl_hydrolase,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_UBP,pfscan_Peptidase_C19/C67	-	no_errors	USP5	HGNC	ENSG00000111667				132	0	0	156	23	12.8492
C1RL	0	genome.wustl.edu	37	12	7249400	7249400	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	12	7249400	7249400	G	-	DEL	C1RL	ENST00000266542	human	ensembl	74_37	-1	known	frame_shift_del	c.1051	p.L351fs	0.908	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,pfam_CUB_dom,superfamily_Trypsin-like_Pept_dom,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Peptidase_S1,pfscan_CUB_dom,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	C1RL	HGNC	ENSG00000139178				66	0	0	85	10	10.5263
CCDC41	0	genome.wustl.edu	37	12	94729387	94729387	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	12	94729387	94729387	T	-	DEL	CCDC41	ENST00000339839	human	ensembl	74_37	-1	known	frame_shift_del	c.1397	p.N466fs	0.407	NULL	NULL	-	no_errors	CCDC41	HGNC	ENSG00000173588				31	0	0	22	9	29.0323
VEZT	0	genome.wustl.edu	37	12	95650969	95650969	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	12	95650969	95650969	T	-	DEL	VEZT	ENST00000436874	human	ensembl	74_37	+1	known	frame_shift_del	c.212	p.S74fs	0.065	NULL	NULL	-	no_errors	VEZT	HGNC	ENSG00000028203				44	0	0	32	11	25.5814
UPF3A	0	genome.wustl.edu	37	13	115057211	115057211	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	13	115057211	115057211	A	-	DEL	UPF3A	ENST00000375299	human	ensembl	74_37	+1	known	frame_shift_del	c.790	p.E267fs	0.943	NULL	pfam_Nonsense_mediated_decay_UPF3	-	no_errors	UPF3A	HGNC	ENSG00000169062				48	0	0	42	8	16
XPO4	0	genome.wustl.edu	37	13	21371027	21371027	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	13	21371027	21371027	A	-	DEL	XPO4	ENST00000255305	human	ensembl	74_37	-1	known	frame_shift_del	c.2492	p.L831fs	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	XPO4	HGNC	ENSG00000132953				74	0	0	45	5	10
ELF1	0	genome.wustl.edu	37	13	41525494	41525494	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	13	41525494	41525494	G	-	DEL	ELF1	ENST00000239882	human	ensembl	74_37	-1	known	frame_shift_del	c.332	p.P111fs	1.000	pfam_TF_Elf_N	pfam_TF_Elf_N,pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	ELF1	HGNC	ENSG00000120690				161	0	0	123	12	8.88889
ABCC4	0	genome.wustl.edu	37	13	95696016	95696016	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	13	95696016	95696016	T	-	DEL	ABCC4	ENST00000376887	human	ensembl	74_37	-1	known	frame_shift_del	c.3655	p.I1219fs	1.000	superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC1_TM_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,prints_CysFib_conduc_TM	-	no_errors	ABCC4	HGNC	ENSG00000125257				104	0	0	75	8	9.63855
CDCA4	0	genome.wustl.edu	37	14	105477665	105477665	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	14	105477665	105477665	C	-	DEL	CDCA4	ENST00000336219	human	ensembl	74_37	-1	known	frame_shift_del	c.602	p.G201fs	0.005	NULL	pfam_SERTA,pfscan_SERTA	-	no_errors	CDCA4	HGNC	ENSG00000170779				81	0	0	66	16	19.5122
BRF1	0	genome.wustl.edu	37	14	105693010	105693010	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	14	105693010	105693010	G	-	DEL	BRF1	ENST00000546474	human	ensembl	74_37	-1	known	frame_shift_del	c.876	p.S293fs	0.896	NULL	pfam_TFIIB_cyclin,pfam_BRF1_TBP-bd,pfam_Znf_TFIIB,superfamily_Cyclin-like,smart_Cyclin-like,pfscan_Znf_TFIIB,prints_TFIIB	-	no_errors	BRF1	HGNC	ENSG00000185024				101	0	0	142	9	5.96026
IRF9	0	genome.wustl.edu	37	14	24633131	24633132	+	In_Frame_Ins	INS	-	-	AGC			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	14	24633131	24633132	-	AGC	INS	IRF9	ENST00000396864	human	ensembl	74_37	+1	known	in_frame_ins	c.540_541	p.184in_frame_insS	0.016:0.064	NULL	pfam_Interferon_reg_fact_DNA-bd_dom,pfam_Interferon_reg_factor-3,superfamily_SMAD_FHA_domain,smart_Interferon_reg_fact_DNA-bd_dom,prints_Interferon_reg_fact_DNA-bd_dom	-	no_errors	IRF9	HGNC	ENSG00000213928				74	0	0	97	13	11.8182
BAZ1A	0	genome.wustl.edu	37	14	35331423	35331423	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	14	35331423	35331423	T	-	DEL	BAZ1A	ENST00000360310	human	ensembl	74_37	-1	known	frame_shift_del	c.219	p.A74fs	1.000	pfam_WSTF_Acf1_Cbp146,pfscan_WSTF_Acf1_Cbp146	pfam_WSTF_Acf1_Cbp146,pfam_Bromodomain,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_WSTF_Acf1_Cbp146,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ1A	HGNC	ENSG00000198604				202	0	0	158	33	17.2775
MIA2	0	genome.wustl.edu	37	14	39716860	39716860	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	14	39716860	39716860	A	-	DEL	MIA2	ENST00000556784	human	ensembl	74_37	+1	putative	frame_shift_del	c.1079	p.D363fs	0.883	NULL	pfam_SH3_2,superfamily_SH3_domain	-	no_errors	MIA2	HGNC	ENSG00000150526				55	0	0	50	8	13.7931
NRXN3	0	genome.wustl.edu	37	14	79270136	79270136	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	14	79270136	79270136	G	-	DEL	NRXN3	ENST00000554738	human	ensembl	74_37	+1	known	frame_shift_del	c.2212	p.R740fs	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN3	HGNC	ENSG00000021645				72	0	0	53	7	11.6667
PTPN21	0	genome.wustl.edu	37	14	88940113	88940113	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	14	88940113	88940113	T	-	DEL	PTPN21	ENST00000328736	human	ensembl	74_37	-1	known	frame_shift_del	c.2545	p.I849fs	0.995	pirsf_Tyr_Pase_non-rcpt_typ-14/21	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_FERM_central,pfam_FERM_N,pfam_FERM_PH-like_C,superfamily_FERM_central,smart_Band_41_domain,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-14/21,pfscan_FERM_domain,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam	-	no_errors	PTPN21	HGNC	ENSG00000070778				127	0	0	110	8	6.77966
SERPINA9	0	genome.wustl.edu	37	14	94929494	94929496	+	In_Frame_Del	DEL	ATC	ATC	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	ATC	ATC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	14	94929494	94929496	ATC	-	DEL	SERPINA9	ENST00000337425	human	ensembl	74_37	-1	known	in_frame_del	c.1244_1242	p.M414in_frame_del	0.017:0.001:0.000	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINA9	HGNC	ENSG00000170054				150	0	0	103	21	16.9355
B2M	0	genome.wustl.edu	37	15	45003781	45003782	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	15	45003781	45003782	CT	-	DEL	B2M	ENST00000544417	human	ensembl	74_37	+1	known	frame_shift_del	c.37_38	p.L15fs	0.000:0.000	NULL	pfam_Ig_C1-set,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	B2M	HGNC	ENSG00000166710				100	0	0	92	20	17.8571
SECISBP2L	0	genome.wustl.edu	37	15	49309051	49309051	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	15	49309051	49309051	T	-	DEL	SECISBP2L	ENST00000559471	human	ensembl	74_37	-1	known	frame_shift_del	c.1413	p.K471fs	0.983	NULL	pfam_Ribosomal_L7Ae/L30e/S12e/Gad45	-	no_errors	SECISBP2L	HGNC	ENSG00000138593				104	1	0.952381	53	9	14.5161
UNC13C	0	genome.wustl.edu	37	15	54306720	54306720	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	15	54306720	54306720	T	-	DEL	UNC13C	ENST00000260323	human	ensembl	74_37	+1	known	frame_shift_del	c.1620	p.F542fs	1.000	NULL	pfam_Munc13_subgr_dom-2,pfam_Ca-dep_secretion_activator,pfam_C2_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_dom,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13C	HGNC	ENSG00000137766				80	0	0	46	16	25.8065
TCF12	0	genome.wustl.edu	37	15	57489984	57489984	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	15	57489984	57489984	A	-	DEL	TCF12	ENST00000438423	human	ensembl	74_37	+1	known	frame_shift_del	c.540	p.V183fs	1.000	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	TCF12	HGNC	ENSG00000140262				117	0	0	71	21	22.8261
USP3	0	genome.wustl.edu	37	15	63829242	63829242	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	15	63829242	63829242	A	-	DEL	USP3	ENST00000380324	human	ensembl	74_37	+1	known	frame_shift_del	c.171	p.K59fs	1.000	pfam_Znf_UBP,smart_Znf_UBP,pfscan_Znf_UBP	pfam_Peptidase_C19/C67,pfam_Znf_UBP,smart_Znf_UBP,pfscan_Znf_UBP,pfscan_Peptidase_C19/C67	-	no_errors	USP3	HGNC	ENSG00000140455				82	0	0	35	4	10.2564
KIAA1024	0	genome.wustl.edu	37	15	79750586	79750586	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	15	79750586	79750586	A	-	DEL	KIAA1024	ENST00000305428	human	ensembl	74_37	+1	known	frame_shift_del	c.2097	p.S702fs	0.527	NULL	pfam_UPF0258	-	no_errors	KIAA1024	HGNC	ENSG00000169330				146	0	0	152	14	8.43373
KIAA0430	0	genome.wustl.edu	37	16	15714308	15714308	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	16	15714308	15714308	T	-	DEL	KIAA0430	ENST00000396368	human	ensembl	74_37	-1	known	frame_shift_del	c.2720	p.K907fs	1.000	NULL	pfam_Limkain_b1_cons_dom,pfam_NYN_limkain-b1,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	KIAA0430	HGNC	ENSG00000166783				55	0	0	39	11	22
MYH11	0	genome.wustl.edu	37	16	15820795	15820797	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	16	15820795	15820797	CTT	-	DEL	MYH11	ENST00000396324	human	ensembl	74_37	-1	known	in_frame_del	c.3789_3787	p.K1263in_frame_del	1.000:1.000:1.000	pfam_Myosin_tail,superfamily_Prefoldin	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_t-SNARE,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYH11	HGNC	ENSG00000133392				264	0	0	288	66	18.6441
PALB2	0	genome.wustl.edu	37	16	23646981	23646981	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	16	23646981	23646981	T	-	DEL	PALB2	ENST00000261584	human	ensembl	74_37	-1	known	frame_shift_del	c.886	p.M296fs	0.000	NULL	superfamily_WD40_repeat_dom	-	no_errors	PALB2	HGNC	ENSG00000083093				144	0	0	104	28	21.2121
ATXN2L	0	genome.wustl.edu	37	16	28847350	28847350	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	16	28847350	28847350	G	-	DEL	ATXN2L	ENST00000395547	human	ensembl	74_37	+1	known	frame_shift_del	c.2992	p.1002fs	1.000	NULL	pfam_LsmAD_domain,pfam_Ataxin-2_C,superfamily_LSM_dom	-	no_errors	ATXN2L	HGNC	ENSG00000168488				93	0	0	135	17	11.1842
TAOK2	0	genome.wustl.edu	37	16	30002499	30002499	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	16	30002499	30002499	G	-	DEL	TAOK2	ENST00000279394	human	ensembl	74_37	+1	known	frame_shift_del	c.2760	p.G922fs	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Homeodomain-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TAOK2	HGNC	ENSG00000149930				130	0	0	96	17	15.0442
PHKG2	0	genome.wustl.edu	37	16	30768017	30768017	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	16	30768017	30768017	C	-	DEL	PHKG2	ENST00000563588	human	ensembl	74_37	+1	known	frame_shift_del	c.908	p.R305fs	0.756	superfamily_Kinase-like_dom,prints_Phosph_kin_gamma	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Phosph_kin_gamma,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PHKG2	HGNC	ENSG00000156873				131	1	0.757576	131	21	13.8158
ZNF646	0	genome.wustl.edu	37	16	31092603	31092604	+	Frame_Shift_Del	DEL	GA	GA	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	GA	GA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	16	31092603	31092604	GA	-	DEL	ZNF646	ENST00000300850	human	ensembl	74_37	+1	known	frame_shift_del	c.4958_4959	p.S1655fs	0.004:0.028	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF646	HGNC	ENSG00000167395				47	0	0	60	12	16.6667
PRSS36	0	genome.wustl.edu	37	16	31154777	31154777	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	16	31154777	31154777	G	-	DEL	PRSS36	ENST00000268281	human	ensembl	74_37	-1	known	frame_shift_del	c.986	p.P329fs	0.000	pirsf_Pept_S1A_polyserase-2,pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pirsf_Pept_S1A_polyserase-2,pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_Peptidase_S1	-	no_errors	PRSS36	HGNC	ENSG00000178226				54	0	0	73	14	16.092
TOX3	0	genome.wustl.edu	37	16	52473795	52473797	+	In_Frame_Del	DEL	AGA	AGA	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	16	52473795	52473797	AGA	-	DEL	TOX3	ENST00000219746	human	ensembl	74_37	-1	known	in_frame_del	c.1073_1071	p.L358in_frame_del	1.000:1.000:0.915	NULL	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	TOX3	HGNC	ENSG00000103460				167	0	0	151	15	9.03614
WDR90	0	genome.wustl.edu	37	16	709106	709106	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	16	709106	709106	C	-	DEL	WDR90	ENST00000549091	human	ensembl	74_37	+1	novel	frame_shift_del	c.3032	p.P1013fs	0.000	NULL	pfam_WD40_repeat,pfam_DUF667,pfam_Nucleoporin_Nup160,superfamily_Quinonprotein_ADH-like_supfam,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR90	HGNC	ENSG00000161996				79	0	0	89	14	13.5922
HYDIN	0	genome.wustl.edu	37	16	71218785	71218785	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	16	71218785	71218785	C	-	DEL	HYDIN	ENST00000448089	human	ensembl	74_37	-1	known	frame_shift_del	c.244	p.E82fs	1.000	NULL	superfamily_PapD-like	-	no_errors	HYDIN	HGNC	ENSG00000157423				253	0	0	175	31	15.0485
ZNF624	0	genome.wustl.edu	37	17	16526706	16526706	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	17	16526706	16526706	T	-	DEL	ZNF624	ENST00000311331	human	ensembl	74_37	-1	known	frame_shift_del	c.1494	p.K498fs	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF624	HGNC	ENSG00000197566				138	0	0	117	12	9.30233
MYO15A	0	genome.wustl.edu	37	17	18025032	18025032	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	17	18025032	18025032	C	-	DEL	MYO15A	ENST00000205890	human	ensembl	74_37	+1	known	frame_shift_del	c.2918	p.T975fs	0.001	NULL	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_SH3_2,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_SH3_domain,smart_Band_41_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO15A	HGNC	ENSG00000091536				42	0	0	24	6	20
UBBP4	0	genome.wustl.edu	37	17	21731034	21731034	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	17	21731034	21731034	C	-	DEL	UBBP4	ENST00000578713	human	ensembl	74_37	+1	putative	frame_shift_del	c.336	p.D115fs	1.000	pfam_Ubiquitin_dom,pfam_Rad60/SUMO_like,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup,prints_Ubiquitin	pfam_Ubiquitin_dom,pfam_Rad60/SUMO_like,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup,prints_Ubiquitin	-	no_errors	UBBP4	HGNC	ENSG00000263563				114	0	0	93	8	7.92079
LGALS9	0	genome.wustl.edu	37	17	25975972	25975972	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	17	25975972	25975972	G	-	DEL	LGALS9	ENST00000395473	human	ensembl	74_37	+1	known	frame_shift_del	c.1032	p.G346fs	0.002	pfam_Galectin_CRD,superfamily_ConA-like_lec_gl_sf,smart_Galectin_CRD	pfam_Galectin_CRD,superfamily_ConA-like_lec_gl_sf,smart_Galectin_CRD	-	no_errors	LGALS9	HGNC	ENSG00000168961				246	0	0	230	22	8.73016
ENSG00000266865	0	genome.wustl.edu	37	17	29349140	29349141	+	RNA	INS	-	-	AT			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	17	29349140	29349141	-	AT	INS	ENSG00000266865	ENST00000579692	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.020:0.032	-	-	-	no_errors	RP11-848P1.9	Clone_based_vega_gene	ENSG00000266865				8	0	0	4	2	33.3333
KRT28	0	genome.wustl.edu	37	17	38950122	38950122	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	17	38950122	38950122	T	-	DEL	KRT28	ENST00000306658	human	ensembl	74_37	-1	known	frame_shift_del	c.1155	p.E386fs	1.000	pfam_IF	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT28	HGNC	ENSG00000173908				195	0	0	153	43	21.9388
KRT28	0	genome.wustl.edu	37	17	38955991	38955991	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	17	38955991	38955991	C	-	DEL	KRT28	ENST00000306658	human	ensembl	74_37	-1	known	frame_shift_del	c.155	p.G52fs	0.634	NULL	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT28	HGNC	ENSG00000173908				116	0	0	106	14	11.6667
KRT33B	0	genome.wustl.edu	37	17	39525931	39525931	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	17	39525931	39525931	G	-	DEL	KRT33B	ENST00000251646	human	ensembl	74_37	-1	known	frame_shift_del	c.72	p.S25fs	1.000	NULL	pfam_IF,prints_Keratin_I	-	no_errors	KRT33B	HGNC	ENSG00000131738				66	0	0	50	11	18.0328
KCNH4	0	genome.wustl.edu	37	17	40328259	40328259	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	17	40328259	40328259	C	-	DEL	KCNH4	ENST00000264661	human	ensembl	74_37	-1	known	frame_shift_del	c.642	p.S215fs	0.999	NULL	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,pfam_PAS_fold_3,pfam_PAS_fold,pfam_PAS_4,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,superfamily_PAS,smart_PAC,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ELK,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,pfscan_PAS,pfscan_PAS-assoc_C,tigrfam_PAS	-	no_errors	KCNH4	HGNC	ENSG00000089558				188	0	0	143	43	23.1183
NAGLU	0	genome.wustl.edu	37	17	40690467	40690468	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	17	40690467	40690468	-	C	INS	NAGLU	ENST00000225927	human	ensembl	74_37	+1	known	frame_shift_ins	c.642_643	p.S216fs	1.000:1.000	pfam_NAGLU_tim-barrel,superfamily_Glycoside_hydrolase_SF	pfam_NAGLU_tim-barrel,superfamily_Glycoside_hydrolase_SF	-	no_errors	NAGLU	HGNC	ENSG00000108784				160	0	0	164	24	12.766
PTGES3L-AARSD1	0	genome.wustl.edu	37	17	41108535	41108535	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	17	41108535	41108535	G	-	DEL	PTGES3L-AARSD1	ENST00000409399	human	ensembl	74_37	-1	known	frame_shift_del	c.954	p.S319fs	0.012	superfamily_Thr/Ala-tRNA-synth_IIc_edit,pfscan_Ala-tRNA-synth_IIc_core	pfam_tRNA_SAD,pfam_CS_dom,pfam_Ala-tRNA-synth_IIc_N,superfamily_Thr/Ala-tRNA-synth_IIc_edit,superfamily_HSP20-like_chaperone,smart_tRNA_SAD,pfscan_CS_dom,pfscan_Ala-tRNA-synth_IIc_core	-	no_errors	PTGES3L-AARSD1	HGNC	ENSG00000108825				74	0	0	49	13	20.9677
GP1BA	0	genome.wustl.edu	37	17	4837373	4837373	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	17	4837373	4837373	A	-	DEL	GP1BA	ENST00000329125	human	ensembl	74_37	+1	known	frame_shift_del	c.1474	p.T494fs	0.000	NULL	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	GP1BA	HGNC	ENSG00000185245				112	0	0	97	11	10.1852
INTS2	0	genome.wustl.edu	37	17	59945339	59945339	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	17	59945339	59945339	A	-	DEL	INTS2	ENST00000444766	human	ensembl	74_37	-1	known	frame_shift_del	c.3300	p.F1100fs	1.000	NULL	NULL	-	no_errors	INTS2	HGNC	ENSG00000108506				46	0	0	24	9	27.2727
POLG2	0	genome.wustl.edu	37	17	62481966	62481966	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	17	62481966	62481966	T	-	DEL	POLG2	ENST00000539111	human	ensembl	74_37	-1	known	frame_shift_del	c.989	p.N330fs	1.000	NULL	pfam_Anticodon-bd,superfamily_Anticodon-bd	-	no_errors	POLG2	HGNC	ENSG00000256525				114	0	0	99	11	10
SOX9	0	genome.wustl.edu	37	17	70117594	70117594	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	17	70117594	70117594	C	-	DEL	SOX9	ENST00000245479	human	ensembl	74_37	+1	known	frame_shift_del	c.62	p.S23fs	1.000	pfam_Sox_N	pfam_Sox_N,pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	SOX9	HGNC	ENSG00000125398				51	0	0	42	13	23.6364
ACAP1	0	genome.wustl.edu	37	17	7252316	7252316	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	17	7252316	7252316	C	-	DEL	ACAP1	ENST00000158762	human	ensembl	74_37	+1	known	frame_shift_del	c.1681	p.S563fs	0.476	NULL	pfam_ArfGAP,pfam_Pleckstrin_homology,superfamily_Ankyrin_rpt-contain_dom,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	ACAP1	HGNC	ENSG00000072818				99	0	0	126	8	5.97015
ITGB4	0	genome.wustl.edu	37	17	73746239	73746239	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	17	73746239	73746239	C	-	DEL	ITGB4	ENST00000200181	human	ensembl	74_37	+1	known	frame_shift_del	c.3364	p.P1123fs	0.000	pirsf_Integrin_bsu-4,superfamily_Fibronectin_type3	pirsf_Integrin_bsu-4,pfam_Integrin_bsu_N,pfam_Fibronectin_type3,pfam_Calx_beta,pfam_Integrin_bsu_tail,pfam_EGF_extracell,superfamily_Fibronectin_type3,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like_fold,smart_Integrin_bsu_N,smart_Calx_beta,smart_Fibronectin_type3,prints_Integrin_bsu,pfscan_Fibronectin_type3	-	no_errors	ITGB4	HGNC	ENSG00000132470				104	0	0	99	15	13.1579
CDK3	0	genome.wustl.edu	37	17	73997602	73997604	+	In_Frame_Del	DEL	GAA	GAA	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	GAA	GAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	17	73997602	73997604	GAA	-	DEL	CDK3	ENST00000425876	human	ensembl	74_37	+1	known	in_frame_del	c.96_98	p.K34in_frame_del	0.994:1.000:1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDK3	HGNC	ENSG00000250506				110	0	0	84	19	18.4466
EFNB3	0	genome.wustl.edu	37	17	7612702	7612702	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	17	7612702	7612702	G	-	DEL	EFNB3	ENST00000226091	human	ensembl	74_37	+1	known	frame_shift_del	c.831	p.G279fs	0.981	NULL	pfam_Ephrin,superfamily_Cupredoxin,prints_Ephrin	-	no_errors	EFNB3	HGNC	ENSG00000108947				31	0	0	31	7	18.4211
SLC38A10	0	genome.wustl.edu	37	17	79219742	79219742	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	17	79219742	79219742	C	-	DEL	SLC38A10	ENST00000374759	human	ensembl	74_37	-1	known	frame_shift_del	c.2974	p.D992fs	0.000	NULL	pfam_AA_transpt_TM	-	no_errors	SLC38A10	HGNC	ENSG00000157637				86	0	0	81	9	10
TRAPPC8	0	genome.wustl.edu	37	18	29453418	29453418	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	18	29453418	29453418	A	-	DEL	TRAPPC8	ENST00000283351	human	ensembl	74_37	-1	known	frame_shift_del	c.2037	p.F679fs	1.000	NULL	NULL	-	no_errors	TRAPPC8	HGNC	ENSG00000153339				44	0	0	31	8	20.5128
WBP11P1	0	genome.wustl.edu	37	18	30093381	30093381	+	RNA	DEL	C	C	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	18	30093381	30093381	C	-	DEL	WBP11P1	ENST00000567636	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.976	-	-	-	no_errors	WBP11P1	HGNC	ENSG00000260389				70	0	0	72	15	17.2414
ENSG00000252258	0	genome.wustl.edu	37	18	3025533	3025533	+	RNA	DEL	A	A	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	18	3025533	3025533	A	-	DEL	ENSG00000252258	ENST00000516449	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.000	-	-	-	no_errors	SNORA70	RFAM	ENSG00000252258				28	0	0	29	8	21.6216
SERPINB12	0	genome.wustl.edu	37	18	61225690	61225690	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	18	61225690	61225690	A	-	DEL	SERPINB12	ENST00000382768	human	ensembl	74_37	+1	novel	frame_shift_del	c.274	p.T94fs	0.008	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINB12	HGNC	ENSG00000166634				76	0	0	59	9	13.2353
ICAM4	0	genome.wustl.edu	37	19	10397718	10397719	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	19	10397718	10397719	-	T	INS	ICAM4	ENST00000340992	human	ensembl	74_37	+1	known	frame_shift_ins	c.30_31	p.L12fs	0.002:0.004	NULL	pfam_ICAM_N	-	no_errors	ICAM4	HGNC	ENSG00000105371				27	0	0	26	8	23.5294
ZNF43	0	genome.wustl.edu	37	19	21992087	21992087	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	19	21992087	21992087	T	-	DEL	ZNF43	ENST00000354959	human	ensembl	74_37	-1	known	frame_shift_del	c.752	p.N251fs	0.932	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF43	HGNC	ENSG00000198521				77	0	0	50	9	15.2542
KMT2B	0	genome.wustl.edu	37	19	36218451	36218451	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	19	36218451	36218451	G	-	DEL	KMT2B	ENST00000222270	human	ensembl	74_37	+1	known	frame_shift_del	c.4230	p.G1412fs	1.000	pirsf_MeTrfase_trithorax,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain	pirsf_MeTrfase_trithorax,pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	KMT2B	Uniprot_gn	ENSG00000272333				82	0	0	92	17	15.5963
KIRREL2	0	genome.wustl.edu	37	19	36349618	36349618	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	19	36349618	36349618	C	-	DEL	KIRREL2	ENST00000360202	human	ensembl	74_37	+1	known	frame_shift_del	c.374	p.Q127fs	0.812	pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	KIRREL2	HGNC	ENSG00000126259				126	0	0	136	14	9.33333
HNRNPL	0	genome.wustl.edu	37	19	39329628	39329628	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	19	39329628	39329628	C	-	DEL	HNRNPL	ENST00000221419	human	ensembl	74_37	-1	known	frame_shift_del	c.1261	p.A421fs	1.000	smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP-L_PTB	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP-L_PTB	-	no_errors	HNRNPL	HGNC	ENSG00000104824				137	0	0	129	8	5.83942
BCKDHA	0	genome.wustl.edu	37	19	41916544	41916544	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	19	41916544	41916544	C	-	DEL	BCKDHA	ENST00000595085	human	ensembl	74_37	+1	known	frame_shift_del	c.213	p.R74fs	0.000	NULL	pfam_DH_E1,pfam_Transketolase_N	-	no_errors	BCKDHA	HGNC	ENSG00000248098				82	0	0	68	14	17.0732
BCKDHA	0	genome.wustl.edu	37	19	41929040	41929042	+	In_Frame_Del	DEL	AGG	AGG	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	AGG	AGG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	19	41929040	41929042	AGG	-	DEL	BCKDHA	ENST00000595085	human	ensembl	74_37	+1	known	in_frame_del	c.1235_1237	p.E413in_frame_del	1.000:1.000:1.000	pfam_DH_E1	pfam_DH_E1,pfam_Transketolase_N	-	no_errors	BCKDHA	HGNC	ENSG00000248098				11	0	0	4	2	33.3333
MEGF8	0	genome.wustl.edu	37	19	42838298	42838298	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	19	42838298	42838298	G	-	DEL	MEGF8	ENST00000251268	human	ensembl	74_37	+1	known	frame_shift_del	c.491	p.G166fs	1.000	smart_EG-like_dom	pfam_CUB_dom,pfam_EGF_laminin,pfam_Plexin_repeat,superfamily_Gal_Oxase/kelch_b-propeller,superfamily_CUB_dom,superfamily_Plexin-like_fold,smart_CUB_dom,smart_EG-like_dom,smart_Plexin-like_fold,smart_EGF-like_Ca-bd_dom,smart_EGF_laminin,pfscan_CUB_dom,pfscan_EG-like_dom,pfscan_EGF_laminin	-	no_errors	MEGF8	HGNC	ENSG00000105429				54	0	0	39	9	18.75
BCL3	0	genome.wustl.edu	37	19	45262726	45262726	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	19	45262726	45262726	C	-	DEL	BCL3	ENST00000164227	human	ensembl	74_37	+1	known	frame_shift_del	c.1219	p.R409fs	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	BCL3	HGNC	ENSG00000069399				355	0	0	531	72	11.9403
APOC1P1	0	genome.wustl.edu	37	19	45434322	45434322	+	RNA	DEL	A	A	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	19	45434322	45434322	A	-	DEL	APOC1P1	ENST00000507983	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	APOC1P1	HGNC	ENSG00000214855				117	0	0	106	23	17.8295
SCAF1	0	genome.wustl.edu	37	19	50158042	50158042	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	19	50158042	50158042	C	-	DEL	SCAF1	ENST00000360565	human	ensembl	74_37	+1	known	frame_shift_del	c.3533	p.T1181fs	0.934	NULL	NULL	-	no_errors	SCAF1	HGNC	ENSG00000126461				54	0	0	80	6	6.97674
MIR125A	0	genome.wustl.edu	37	19	52196036	52196036	+	RNA	DEL	C	C	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	19	52196036	52196036	C	-	DEL	MIR125A	ENST00000602324	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	hsa-mir-125a	miRBase	ENSG00000269959				66	0	0	44	9	16.9811
ZNF468	0	genome.wustl.edu	37	19	53344851	53344851	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	19	53344851	53344851	T	-	DEL	ZNF468	ENST00000595646	human	ensembl	74_37	-1	known	frame_shift_del	c.696	p.K232fs	0.001	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF468	HGNC	ENSG00000204604				99	0	0	84	15	15.1515
NLRP13	0	genome.wustl.edu	37	19	56423266	56423266	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	19	56423266	56423266	A	-	DEL	NLRP13	ENST00000342929	human	ensembl	74_37	-1	known	frame_shift_del	c.1917	p.H640fs	0.003	NULL	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP13	HGNC	ENSG00000173572				127	0	0	98	20	16.9492
FBN3	0	genome.wustl.edu	37	19	8193949	8193949	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	19	8193949	8193949	G	-	DEL	FBN3	ENST00000270509	human	ensembl	74_37	-1	known	frame_shift_del	c.2259	p.G754fs	0.646	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pirsf_FBN,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd_dom,pfam_TB_dom,pfam_EG-like_dom,superfamily_TB_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pirsf_FBN,pfscan_EG-like_dom	-	no_errors	FBN3	HGNC	ENSG00000142449				102	0	0	89	9	9.18367
MUC16	0	genome.wustl.edu	37	19	9049102	9049103	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	19	9049102	9049103	-	A	INS	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	frame_shift_ins	c.32529_32528	p.H10844fs	0.001:0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				170	0	0	138	29	17.3653
AFF3	0	genome.wustl.edu	37	2	100199306	100199306	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	100199306	100199306	T	-	DEL	AFF3	ENST00000356421	human	ensembl	74_37	-1	known	frame_shift_del	c.2822	p.K941fs	1.000	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF3	HGNC	ENSG00000144218				112	0	0	118	10	7.8125
IL1R2	0	genome.wustl.edu	37	2	102638649	102638649	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	102638649	102638649	A	-	DEL	IL1R2	ENST00000332549	human	ensembl	74_37	+1	known	frame_shift_del	c.689	p.E233fs	0.987	prints_IL-1_rcpt_II-typ	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom,prints_IL-1_rcpt_II-typ,prints_IL-1_rcpt_I/II-typ	-	no_errors	IL1R2	HGNC	ENSG00000115590				257	0	0	268	42	13.5484
MFSD9	0	genome.wustl.edu	37	2	103334978	103334978	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	103334978	103334978	G	-	DEL	MFSD9	ENST00000258436	human	ensembl	74_37	-1	known	frame_shift_del	c.1326	p.S443fs	0.000	superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Tet-R_TetA/multi-R_MdtG	-	no_errors	MFSD9	HGNC	ENSG00000135953				81	0	0	79	31	28.1818
GCC2	0	genome.wustl.edu	37	2	109086477	109086477	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	109086477	109086477	A	-	DEL	GCC2	ENST00000309863	human	ensembl	74_37	+1	known	frame_shift_del	c.692	p.N233fs	1.000	NULL	pfam_GRIP,superfamily_GRIP,superfamily_tRNA-bd_arm,smart_GRIP,pfscan_GRIP	-	no_errors	GCC2	HGNC	ENSG00000135968				160	0	0	134	39	22.5434
NCKAP5	0	genome.wustl.edu	37	2	133887625	133887625	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	133887625	133887625	T	-	DEL	NCKAP5	ENST00000317721	human	ensembl	74_37	-1	known	frame_shift_del	c.266	p.K89fs	1.000	NULL	NULL	-	no_errors	NCKAP5	HGNC	ENSG00000176771				45	0	0	16	6	27.2727
ACVR2A	0	genome.wustl.edu	37	2	148683686	148683686	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	148683686	148683686	A	-	DEL	ACVR2A	ENST00000241416	human	ensembl	74_37	+1	known	frame_shift_del	c.1303	p.K437fs	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_TGFB_receptor	-	no_errors	ACVR2A	HGNC	ENSG00000121989				148	0	0	88	48	35.2941
SCN7A	0	genome.wustl.edu	37	2	167313548	167313548	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	167313548	167313548	A	-	DEL	SCN7A	ENST00000409855	human	ensembl	74_37	-1	known	frame_shift_del	c.1122	p.F374fs	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,prints_Na_channel_asu	-	no_errors	SCN7A	HGNC	ENSG00000136546				45	0	0	27	8	22.8571
SMC6	0	genome.wustl.edu	37	2	17888597	17888597	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	17888597	17888597	T	-	DEL	SMC6	ENST00000381272	human	ensembl	74_37	-1	known	frame_shift_del	c.1973	p.N658fs	1.000	superfamily_P-loop_NTPase	superfamily_P-loop_NTPase	-	no_errors	SMC6	HGNC	ENSG00000163029				108	0	0	50	17	25.3731
TTN	0	genome.wustl.edu	37	2	179659863	179659863	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	179659863	179659863	G	-	DEL	TTN	ENST00000342992	human	ensembl	74_37	-1	known	frame_shift_del	c.1031	p.P344fs	1.000	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				91	0	0	89	18	16.8224
APOB	0	genome.wustl.edu	37	2	21228306	21228307	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	21228306	21228307	-	A	INS	APOB	ENST00000233242	human	ensembl	74_37	-1	known	frame_shift_ins	c.11434_11433	p.E3811fs	1.000:1.000	NULL	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674				188	0	0	126	8	5.97015
BARD1	0	genome.wustl.edu	37	2	215646085	215646085	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	215646085	215646085	T	-	DEL	BARD1	ENST00000260947	human	ensembl	74_37	-1	known	frame_shift_del	c.513	p.D172fs	0.000	NULL	pfam_Ankyrin_rpt,pfam_BRCT_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_BRCT_dom,smart_Ankyrin_rpt,smart_BRCT_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_BRCT_dom,pfscan_Znf_RING,prints_Ankyrin_rpt	-	no_errors	BARD1	HGNC	ENSG00000138376				196	0	0	129	11	7.85714
SP140L	0	genome.wustl.edu	37	2	231266129	231266129	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	231266129	231266129	T	-	DEL	SP140L	ENST00000415673	human	ensembl	74_37	+1	known	frame_shift_del	c.1471	p.F492fs	0.473	superfamily_Bromodomain,smart_Bromodomain	pfam_Sp100,pfam_SAND_dom,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_SAND_dom-like,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_SAND_dom,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_PHD-finger,pfscan_SAND_dom,pfscan_Bromodomain	-	no_errors	SP140L	HGNC	ENSG00000185404				223	0	0	181	11	5.72917
AGAP1	0	genome.wustl.edu	37	2	236649677	236649677	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	236649677	236649677	C	-	DEL	AGAP1	ENST00000304032	human	ensembl	74_37	+1	known	frame_shift_del	c.381	p.P129fs	0.952	pfam_MIRO-like,pfam_Small_GTPase,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,prints_Small_GTPase	pfam_ArfGAP,pfam_MIRO-like,pfam_Small_GTPase,pfam_Ankyrin_rpt,pfam_Pleckstrin_homology,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP,prints_Small_GTPase	-	no_errors	AGAP1	HGNC	ENSG00000157985				65	0	0	49	13	20.9677
AHSA2	0	genome.wustl.edu	37	2	61413904	61413905	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	61413904	61413905	-	C	INS	AHSA2	ENST00000357022	human	ensembl	74_37	+1	known	frame_shift_ins	c.397_398	p.L135fs	0.002:0.001	NULL	NULL	-	no_errors	AHSA2	HGNC	ENSG00000173209				57	0	0	30	8	21.0526
ZNF638	0	genome.wustl.edu	37	2	71650549	71650549	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	71650549	71650549	A	-	DEL	ZNF638	ENST00000264447	human	ensembl	74_37	+1	known	frame_shift_del	c.3905	p.G1305fs	0.992	NULL	pfam_RRM_dom,smart_Znf_U1,smart_Znf_C2H2-like,smart_RRM_dom,pfscan_Znf_C2H2_matrin,pfscan_RRM_dom	-	no_errors	ZNF638	HGNC	ENSG00000075292				56	0	0	53	8	13.1148
RTKN	0	genome.wustl.edu	37	2	74653450	74653450	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	2	74653450	74653450	G	-	DEL	RTKN	ENST00000272430	human	ensembl	74_37	-1	known	frame_shift_del	c.1612	p.L538fs	0.946	NULL	pfam_Pleckstrin_homology,pfam_HR1_rho-bd,superfamily_HR1_rho-bd,smart_HR1_rho-bd,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	RTKN	HGNC	ENSG00000114993				172	0	0	178	67	27.3469
PLAGL2	0	genome.wustl.edu	37	20	30789952	30789952	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	20	30789952	30789952	G	-	DEL	PLAGL2	ENST00000246229	human	ensembl	74_37	-1	known	frame_shift_del	c.30	p.W11fs	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	PLAGL2	HGNC	ENSG00000126003				76	0	0	50	7	12.2807
FAM83D	0	genome.wustl.edu	37	20	37555035	37555035	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	20	37555035	37555035	C	-	DEL	FAM83D	ENST00000217429	human	ensembl	74_37	+1	known	frame_shift_del	c.40	p.R14fs	0.000	NULL	pfam_DUF1669	-	no_errors	FAM83D	HGNC	ENSG00000101447				60	0	0	29	17	36.9565
ZFP64	0	genome.wustl.edu	37	20	50769075	50769076	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	20	50769075	50769076	-	G	INS	ZFP64	ENST00000216923	human	ensembl	74_37	-1	known	frame_shift_ins	c.1656_1655	p.Q553fs	0.000:0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFP64	HGNC	ENSG00000020256				53	0	0	59	7	10.6061
FAM209A	0	genome.wustl.edu	37	20	55100911	55100911	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	20	55100911	55100911	A	-	DEL	FAM209A	ENST00000371328	human	ensembl	74_37	+1	known	frame_shift_del	c.301	p.R103fs	0.004	NULL	NULL	-	no_errors	FAM209A	HGNC	ENSG00000124103				146	0	0	107	46	30.0654
FAM217B	0	genome.wustl.edu	37	20	58519619	58519620	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	20	58519619	58519620	-	C	INS	FAM217B	ENST00000358293	human	ensembl	74_37	+1	known	frame_shift_ins	c.621_622	p.T209fs	0.254:0.257	NULL	NULL	-	no_errors	FAM217B	HGNC	ENSG00000196227				93	0	0	98	6	5.76923
BRWD1	0	genome.wustl.edu	37	21	40582837	40582837	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	21	40582837	40582837	T	-	DEL	BRWD1	ENST00000333229	human	ensembl	74_37	-1	known	frame_shift_del	c.3919	p.S1307fs	1.000	superfamily_Bromodomain	pfam_WD40_repeat,pfam_Bromodomain,superfamily_WD40_repeat_dom,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Bromodomain	-	no_errors	BRWD1	HGNC	ENSG00000185658				72	0	0	47	8	14.5455
CBS	0	genome.wustl.edu	37	21	44476174	44476175	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	21	44476174	44476175	-	C	INS	CBS	ENST00000398168	human	ensembl	74_37	-1	known	frame_shift_ins	c.1588_1587	p.P529fs	0.937:0.945	tigrfam_Cysta_beta_synth	pfam_Trp_syn_b_sub_like_PLP_eny_SF,pfam_CBS_dom,superfamily_Trp_syn_b_sub_like_PLP_eny_SF,smart_CBS_dom,tigrfam_Cysta_beta_synth	-	no_errors	CBS	HGNC	ENSG00000160200				88	0	0	67	12	15.1899
SIK1	0	genome.wustl.edu	37	21	44836942	44836942	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	21	44836942	44836942	G	-	DEL	SIK1	ENST00000270162	human	ensembl	74_37	-1	known	frame_shift_del	c.2032	p.Q678fs	0.361	pirsf_Ser/Thr_kinase_SIK1/2	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ser/Thr_kinase_SIK1/2,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	SIK1	HGNC	ENSG00000142178				8	0	0	7	5	41.6667
KRTAP10-6	0	genome.wustl.edu	37	21	46012219	46012220	+	In_Frame_Ins	INS	-	-	GGGGCGCAGCAGCTG			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	21	46012219	46012220	-	GGGGCGCAGCAGCTG	INS	KRTAP10-6	ENST00000400368	human	ensembl	74_37	-1	known	in_frame_ins	c.147_146	p.50in_frame_insSCCAP	0.178:0.528	NULL	NULL	-	no_errors	KRTAP10-6	HGNC	ENSG00000188155				71	0	0	103	11	9.64912
LSS	0	genome.wustl.edu	37	21	47626622	47626623	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	21	47626622	47626623	-	C	INS	LSS	ENST00000356396	human	ensembl	74_37	-1	known	frame_shift_ins	c.1528_1527	p.H509fs	0.000:0.000	superfamily_Terpenoid_cyclase/PrenylTrfase,tigrfam_Squalene_cyclase	pfam_Prenyltrans,superfamily_Terpenoid_cyclase/PrenylTrfase,tigrfam_Squalene_cyclase	-	no_errors	LSS	HGNC	ENSG00000160285				74	0	0	71	11	13.4146
TRMT2A	0	genome.wustl.edu	37	22	20100322	20100322	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	22	20100322	20100322	G	-	DEL	TRMT2A	ENST00000404751	human	ensembl	74_37	-1	known	frame_shift_del	c.1664	p.P555fs	0.009	NULL	pfam_U5_MeTrfase,pfam_PCMT,pfam_Small_mtfrase_dom,pfam_RNA_methylase_dom,pfam_RNA_MeTrfase_RsmD,pfam_Methyltransf_11,pfam_tRNA_(Gua-N-7)_MeTrfase,pfam_UbiE/COQ5_MeTrFase,pfscan_RRM_dom	-	no_errors	TRMT2A	HGNC	ENSG00000099899				64	0	0	48	9	15.7895
SEC14L6	0	genome.wustl.edu	37	22	30921855	30921855	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	22	30921855	30921855	C	-	DEL	SEC14L6	ENST00000402034	human	ensembl	74_37	-1	novel	frame_shift_del	c.729	p.T244fs	0.361	pfam_CRAL-TRIO_dom,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,prints_CRAL-bd_toc_tran	pfam_CRAL-TRIO_dom,pfam_CRAL/TRIO_N_dom,superfamily_CRAL-TRIO_dom,superfamily_GOLD,superfamily_CRAL/TRIO_N_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_GOLD,prints_CRAL-bd_toc_tran	-	no_errors	SEC14L6	HGNC	ENSG00000214491				40	0	0	37	5	11.9048
OSBP2	0	genome.wustl.edu	37	22	31289119	31289120	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	22	31289119	31289120	-	C	INS	OSBP2	ENST00000332585	human	ensembl	74_37	+1	known	frame_shift_ins	c.1880_1881	p.S630fs	1.000:1.000	pfam_Oxysterol-bd	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,superfamily_DNA-bd_dom_put,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBP2	HGNC	ENSG00000184792				47	0	0	37	8	17.7778
TRIOBP	0	genome.wustl.edu	37	22	38130773	38130773	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	22	38130773	38130773	G	-	DEL	TRIOBP	ENST00000406386	human	ensembl	74_37	+1	known	frame_shift_del	c.4430	p.G1479fs	0.003	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	TRIOBP	HGNC	ENSG00000100106				26	0	0	28	9	24.3243
ENSG00000206567	0	genome.wustl.edu	37	3	10049217	10049217	+	RNA	DEL	C	C	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	3	10049217	10049217	C	-	DEL	ENSG00000206567	ENST00000383808	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	AC022007.5	Clone_based_vega_gene	ENSG00000206567				194	0	0	197	15	7.07547
MORC1	0	genome.wustl.edu	37	3	108818240	108818240	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	3	108818240	108818240	A	-	DEL	MORC1	ENST00000232603	human	ensembl	74_37	-1	known	frame_shift_del	c.388	p.S130fs	1.000	superfamily_HATPase_ATP-bd	pfam_Znf_CW,superfamily_HATPase_ATP-bd,pfscan_Znf_CW	-	no_errors	MORC1	HGNC	ENSG00000114487				89	0	0	55	8	12.6984
TMEM39A	0	genome.wustl.edu	37	3	119176962	119176962	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	3	119176962	119176962	A	-	DEL	TMEM39A	ENST00000319172	human	ensembl	74_37	-1	known	frame_shift_del	c.239	p.F80fs	1.000	pfam_Uncharacterised_TMEM39	pfam_Uncharacterised_TMEM39	-	no_errors	TMEM39A	HGNC	ENSG00000176142				131	0	0	61	13	17.5676
EPHB1	0	genome.wustl.edu	37	3	134851848	134851848	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	3	134851848	134851848	C	-	DEL	EPHB1	ENST00000398015	human	ensembl	74_37	+1	known	frame_shift_del	c.1254	p.P420fs	0.998	pirsf_Tyr_kinase_ephrin_rcpt,superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHB1	HGNC	ENSG00000154928				74	0	0	52	11	17.4603
GPR87	0	genome.wustl.edu	37	3	151012163	151012163	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	3	151012163	151012163	T	-	DEL	GPR87	ENST00000260843	human	ensembl	74_37	-1	known	frame_shift_del	c.871	p.I291fs	0.996	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_P2Y13_rcpt,prints_P2Y14_rcpt	-	no_errors	GPR87	HGNC	ENSG00000138271				93	0	0	64	16	20
C3orf33	0	genome.wustl.edu	37	3	155481558	155481558	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	3	155481558	155481558	T	-	DEL	C3orf33	ENST00000340171	human	ensembl	74_37	-1	known	frame_shift_del	c.633	p.G212fs	1.000	superfamily_Staphylococal_nuclease_OB-fold	superfamily_Staphylococal_nuclease_OB-fold	-	no_errors	C3orf33	HGNC	ENSG00000174928				64	0	0	35	8	18.6047
DYNC1LI1	0	genome.wustl.edu	37	3	32569943	32569943	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	3	32569943	32569943	T	-	DEL	DYNC1LI1	ENST00000273130	human	ensembl	74_37	-1	known	frame_shift_del	c.1457	p.K486fs	1.000	pfam_Dynein_light_int_chain	pfam_Dynein_light_int_chain,superfamily_P-loop_NTPase	-	no_errors	DYNC1LI1	HGNC	ENSG00000144635				62	0	0	50	12	19.3548
UBA3	0	genome.wustl.edu	37	3	69112219	69112220	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	3	69112219	69112220	-	C	INS	UBA3	ENST00000361055	human	ensembl	74_37	-1	known	frame_shift_ins	c.607_606	p.T202fs	1.000:0.824	pfam_ThiF_NAD_FAD-bd,superfamily_Molybdenum_cofac_synth_MoeB	pfam_ThiF_NAD_FAD-bd,pfam_E2_binding,pfam_UBact_repeat,pfam_Ubiquitin-activating_enzyme,superfamily_Molybdenum_cofac_synth_MoeB	-	no_errors	UBA3	HGNC	ENSG00000144744				134	0	0	99	8	7.47664
ANK2	0	genome.wustl.edu	37	4	114214679	114214681	+	In_Frame_Del	DEL	CAC	CAC	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	CAC	CAC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	4	114214679	114214681	CAC	-	DEL	ANK2	ENST00000357077	human	ensembl	74_37	+1	known	in_frame_del	c.2460_2462	p.T824in_frame_del	0.942:0.981:1.000	superfamily_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,smart_Ankyrin_rpt,smart_ZU5,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK2	HGNC	ENSG00000145362				39	0	0	55	10	15.3846
ANK2	0	genome.wustl.edu	37	4	114290957	114290957	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	4	114290957	114290957	A	-	DEL	ANK2	ENST00000357077	human	ensembl	74_37	+1	known	frame_shift_del	c.11606	p.K3870fs	1.000	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,smart_Ankyrin_rpt,smart_ZU5,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK2	HGNC	ENSG00000145362				86	0	0	59	12	16.9014
TNIP3	0	genome.wustl.edu	37	4	122075764	122075764	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	4	122075764	122075764	T	-	DEL	TNIP3	ENST00000057513	human	ensembl	74_37	-1	known	frame_shift_del	c.434	p.N145fs	0.574	NULL	NULL	-	no_errors	TNIP3	HGNC	ENSG00000050730				85	0	0	54	13	19.403
FAT4	0	genome.wustl.edu	37	4	126411565	126411566	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	4	126411565	126411566	-	G	INS	FAT4	ENST00000394329	human	ensembl	74_37	+1	known	frame_shift_ins	c.13588_13589	p.K4532fs	0.984:0.998	NULL	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159				80	0	0	71	11	13.4146
ABCE1	0	genome.wustl.edu	37	4	146041224	146041224	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	4	146041224	146041224	A	-	DEL	ABCE1	ENST00000296577	human	ensembl	74_37	+1	known	frame_shift_del	c.1063	p.M357fs	1.000	pfscan_ABC_transporter-like	pfam_ABC_transporter-like,pfam_RNaseL-inhib_metal-bd_dom,pfam_4Fe4S-bd_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,prints_ABC_E	-	no_errors	ABCE1	HGNC	ENSG00000164163				79	0	0	44	16	26.6667
NEIL3	0	genome.wustl.edu	37	4	178283558	178283558	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	4	178283558	178283558	A	-	DEL	NEIL3	ENST00000264596	human	ensembl	74_37	+1	known	frame_shift_del	c.1751	p.K585fs	1.000	pfam_Znf_GRF	pfam_Znf_GRF,pfam_DNA_glyclase/AP_lyase_DNA-bd,pfam_Znf_RanBP2,superfamily_Ribosomal_S13-like_H2TH,superfamily_DNA_glycosylase/AP_lyase_cat,smart_Znf_RanBP2,pfscan_Znf_RanBP2,pfscan_Znf_DNA_glyclase/AP_lyase,pfscan_DNA_glycosylase/AP_lyase_cat	-	no_errors	NEIL3	HGNC	ENSG00000109674				125	0	0	79	20	20.202
PI4K2B	0	genome.wustl.edu	37	4	25278792	25278792	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	4	25278792	25278792	T	-	DEL	PI4K2B	ENST00000264864	human	ensembl	74_37	+1	known	frame_shift_del	c.1429	p.S479fs	0.997	NULL	pfam_PI3/4_kinase_cat_dom	-	no_errors	PI4K2B	HGNC	ENSG00000038210				161	0	0	118	14	10.6061
NSUN7	0	genome.wustl.edu	37	4	40752837	40752837	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	4	40752837	40752837	C	-	DEL	NSUN7	ENST00000381782	human	ensembl	74_37	+1	known	frame_shift_del	c.127	p.P43fs	0.999	NULL	pfam_Fmu/NOL1/Nop2p	-	no_errors	NSUN7	HGNC	ENSG00000179299				155	0	0	114	18	13.6364
ZNF608	0	genome.wustl.edu	37	5	123983182	123983183	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	5	123983182	123983183	-	G	INS	ZNF608	ENST00000306315	human	ensembl	74_37	-1	known	frame_shift_ins	c.2895_2894	p.S966fs	0.127:1.000	NULL	NULL	-	no_errors	ZNF608	HGNC	ENSG00000168916				126	0	0	121	8	6.20155
FAM13B	0	genome.wustl.edu	37	5	137278834	137278834	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	5	137278834	137278834	A	-	DEL	FAM13B	ENST00000033079	human	ensembl	74_37	-1	known	frame_shift_del	c.2346	p.F782fs	1.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	FAM13B	HGNC	ENSG00000031003				100	0	0	40	7	14.8936
ARHGAP26	0	genome.wustl.edu	37	5	142437268	142437269	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	5	142437268	142437269	-	A	INS	ARHGAP26	ENST00000274498	human	ensembl	74_37	+1	known	frame_shift_ins	c.1494_1495	p.N499fs	1.000:1.000	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_SH3_domain,pfam_SH3_2,pfam_IRSp53/MIM_homology_IMD,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_RhoGAP_dom,smart_SH3_domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	ARHGAP26	HGNC	ENSG00000145819				189	0	0	127	15	10.5634
TCERG1	0	genome.wustl.edu	37	5	145886723	145886724	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	5	145886723	145886724	AA	-	DEL	TCERG1	ENST00000296702	human	ensembl	74_37	+1	known	frame_shift_del	c.2863_2864	p.K957fs	1.000:1.000	pfam_FF_domain,superfamily_FF_domain,smart_FF_domain	pfam_FF_domain,pfam_WW_dom,superfamily_FF_domain,superfamily_WW_dom,smart_WW_dom,smart_FF_domain,pfscan_WW_dom	-	no_errors	TCERG1	HGNC	ENSG00000113649				125	0	0	77	14	15.3846
SLC26A2	0	genome.wustl.edu	37	5	149357647	149357647	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	5	149357647	149357647	T	-	DEL	SLC26A2	ENST00000286298	human	ensembl	74_37	+1	known	frame_shift_del	c.432	p.F146fs	0.583	tigrfam_SulP_transpt	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	-	no_errors	SLC26A2	HGNC	ENSG00000155850				117	0	0	130	23	15.0327
ADAM19	0	genome.wustl.edu	37	5	156920069	156920069	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	5	156920069	156920069	C	-	DEL	ADAM19	ENST00000394020	human	ensembl	74_37	-1	known	frame_shift_del	c.1826	p.G609fs	1.000	pfam_ADAM_Cys-rich,smart_ADAM_Cys-rich	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM19	HGNC	ENSG00000135074				102	0	0	89	17	16.0377
HMMR	0	genome.wustl.edu	37	5	162917426	162917426	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	5	162917426	162917426	A	-	DEL	HMMR	ENST00000393915	human	ensembl	74_37	+1	known	frame_shift_del	c.1993	p.K667fs	1.000	NULL	NULL	-	no_errors	HMMR	HGNC	ENSG00000072571				124	0	0	72	9	11.1111
GRM6	0	genome.wustl.edu	37	5	178418555	178418555	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	5	178418555	178418555	C	-	DEL	GRM6	ENST00000231188	human	ensembl	74_37	-1	known	frame_shift_del	c.727	p.V243fs	0.986	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,prints_GPCR_3_mtglu_rcpt	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_6,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_4	-	no_errors	GRM6	HGNC	ENSG00000113262				182	0	0	158	18	10.2273
MSH3	0	genome.wustl.edu	37	5	79970915	79970915	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	5	79970915	79970915	A	-	DEL	MSH3	ENST00000265081	human	ensembl	74_37	+1	known	frame_shift_del	c.1141	p.K383fs	0.982	pfam_DNA_mmatch_repair_MutS_con_dom,superfamily_DNA_mmatch_repair_MutS_con_dom	pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS_core,pfam_DNA_mmatch_repair_MutS_con_dom,pfam_DNA_mismatch_repair_MutS-lik_N,pfam_DNA_mismatch_repair_MutS_clamp,superfamily_DNA_mismatch_repair_MutS_core,superfamily_P-loop_NTPase,superfamily_DNA_mismatch_repair_MutS_N,superfamily_DNA_mmatch_repair_MutS_con_dom,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C	-	no_errors	MSH3	HGNC	ENSG00000113318				206	2	0.961538	130	23	15.0327
HAPLN1	0	genome.wustl.edu	37	5	82948434	82948434	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	5	82948434	82948434	T	-	DEL	HAPLN1	ENST00000274341	human	ensembl	74_37	-1	known	frame_shift_del	c.310	p.T104fs	1.000	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Link,pfam_Ig_V-set,superfamily_C-type_lectin_fold,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Link,pfscan_Link,pfscan_Ig-like_dom,prints_Link	-	no_errors	HAPLN1	HGNC	ENSG00000145681				168	0	0	140	10	6.66667
CHD1	0	genome.wustl.edu	37	5	98206409	98206409	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	5	98206409	98206409	T	-	DEL	CHD1	ENST00000284049	human	ensembl	74_37	-1	known	frame_shift_del	c.3960	p.E1321fs	1.000	superfamily_Homeodomain-like	pfam_SNF2_N,pfam_Chromo_domain,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,superfamily_Homeodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD1	HGNC	ENSG00000153922				143	0	0	87	7	7.44681
GRIK2	0	genome.wustl.edu	37	6	102503432	102503432	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	6	102503432	102503432	A	-	DEL	GRIK2	ENST00000421544	human	ensembl	74_37	+1	known	frame_shift_del	c.2539	p.N849fs	1.000	NULL	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK2	HGNC	ENSG00000164418				199	0	0	132	20	13.1579
SOBP	0	genome.wustl.edu	37	6	107956280	107956282	+	In_Frame_Del	DEL	GCC	GCC	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	GCC	GCC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	6	107956280	107956282	GCC	-	DEL	SOBP	ENST00000317357	human	ensembl	74_37	+1	known	in_frame_del	c.2232_2234	p.P748in_frame_del	0.125:0.067:0.048	NULL	NULL	-	no_errors	SOBP	HGNC	ENSG00000112320				8	0	0	7	5	41.6667
KIAA1919	0	genome.wustl.edu	37	6	111587361	111587361	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	6	111587361	111587361	T	-	DEL	KIAA1919	ENST00000368847	human	ensembl	74_37	+1	known	frame_shift_del	c.596	p.C202fs	0.469	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	KIAA1919	HGNC	ENSG00000173214				67	0	0	58	13	18.3099
LAMA4	0	genome.wustl.edu	37	6	112438990	112438991	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	6	112438990	112438991	-	G	INS	LAMA4	ENST00000230538	human	ensembl	74_37	-1	known	frame_shift_ins	c.4933_4932	p.M1644fs	0.979:0.611	superfamily_ConA-like_lec_gl_sf	pfam_Laminin_G,pfam_Laminin_I,pfam_Laminin_II,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Focal_adhesion_kin_target_dom,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Laminin_G	-	no_errors	LAMA4	HGNC	ENSG00000112769				154	0	0	90	25	21.7391
FAM26E	0	genome.wustl.edu	37	6	116836954	116836954	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	6	116836954	116836954	T	-	DEL	FAM26E	ENST00000368599	human	ensembl	74_37	+1	known	frame_shift_del	c.732	p.F246fs	1.000	NULL	NULL	-	no_errors	FAM26E	HGNC	ENSG00000178033				132	0	0	96	19	16.5217
SOGA3	0	genome.wustl.edu	37	6	127804080	127804080	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	6	127804080	127804080	T	-	DEL	SOGA3	ENST00000368268	human	ensembl	74_37	-1	known	frame_shift_del	c.1535	p.K512fs	1.000	NULL	pfam_SOGA	-	no_errors	SOGA3	HGNC	ENSG00000214338				201	1	0.49505	100	24	19.3548
HEBP2	0	genome.wustl.edu	37	6	138734183	138734184	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	6	138734183	138734184	-	A	INS	HEBP2	ENST00000607197	human	ensembl	74_37	+1	known	frame_shift_ins	c.586_587	p.N198fs	1.000:1.000	NULL	pfam_SOUL_haem-bd,superfamily_Reg_factor_effector_dom	-	no_errors	HEBP2	HGNC	ENSG00000051620				140	0	0	100	11	9.90991
SHPRH	0	genome.wustl.edu	37	6	146264759	146264759	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	6	146264759	146264759	T	-	DEL	SHPRH	ENST00000367503	human	ensembl	74_37	-1	known	frame_shift_del	c.1758	p.G587fs	0.000	superfamily_P-loop_NTPase,smart_Helicase_ATP-bd	pfam_SNF2_N,pfam_Histone_H1/H5_H15,superfamily_P-loop_NTPase,superfamily_Znf_FYVE_PHD,superfamily_WW_dom,smart_Helicase_ATP-bd,smart_Histone_H1/H5_H15,smart_Znf_PHD,smart_Znf_RING,smart_Helicase_C,pfscan_Znf_RING,pfscan_Helicase_C	-	no_errors	SHPRH	HGNC	ENSG00000146414				173	1	0.574713	110	26	19.1176
SYNJ2	0	genome.wustl.edu	37	6	158497755	158497755	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	6	158497755	158497755	C	-	DEL	SYNJ2	ENST00000355585	human	ensembl	74_37	+1	known	frame_shift_del	c.2390	p.A799fs	0.878	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc	pfam_Syja_N,pfam_DUF1866,pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc,pfscan_RRM_dom,pfscan_Syja_N	-	no_errors	SYNJ2	HGNC	ENSG00000078269				62	0	0	57	14	19.7183
SYNJ2	0	genome.wustl.edu	37	6	158508009	158508009	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	6	158508009	158508009	C	-	DEL	SYNJ2	ENST00000355585	human	ensembl	74_37	+1	known	frame_shift_del	c.3331	p.P1113fs	1.000	NULL	pfam_Syja_N,pfam_DUF1866,pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc,pfscan_RRM_dom,pfscan_Syja_N	-	no_errors	SYNJ2	HGNC	ENSG00000078269				38	0	0	40	5	11.1111
QKI	0	genome.wustl.edu	37	6	163899920	163899920	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	6	163899920	163899920	A	-	DEL	QKI	ENST00000361752	human	ensembl	74_37	+1	known	frame_shift_del	c.394	p.K134fs	1.000	smart_KH_dom	pfam_KH_dom_type_1,smart_KH_dom	-	no_errors	QKI	HGNC	ENSG00000112531				83	0	0	70	14	16.6667
FAM120B	0	genome.wustl.edu	37	6	170627589	170627590	+	In_Frame_Ins	INS	-	-	CTGAACCCAGGCAAGAAGTTCCCACGTGTTCAGACC			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	6	170627589	170627590	-	CTGAACCCAGGCAAGAAGTTCCCACGTGTTCAGACC	INS	FAM120B	ENST00000537664	human	ensembl	74_37	+1	known	in_frame_ins	c.1180_1181	p.398in_frame_insQEVPTCSDPEPR	0.003:0.006	NULL	NULL	-	no_errors	FAM120B	HGNC	ENSG00000112584				316	0	0	279	55	16.4671
TBP	0	genome.wustl.edu	37	6	170871047	170871052	+	In_Frame_Del	DEL	CAGCAG	CAGCAG	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	CAGCAG	CAGCAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	6	170871047	170871052	CAGCAG	-	DEL	TBP	ENST00000230354	human	ensembl	74_37	+1	known	in_frame_del	c.223_228	p.QQ78in_frame_del	0.979:0.985:0.989:0.992:0.994:0.994	NULL	pfam_TBP,prints_TBP	-	no_errors	TBP	HGNC	ENSG00000112592				59	0	0	55	9	14.0625
HIST1H1A	0	genome.wustl.edu	37	6	26017761	26017761	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	6	26017761	26017761	T	-	DEL	HIST1H1A	ENST00000244573	human	ensembl	74_37	-1	known	frame_shift_del	c.200	p.K67fs	1.000	pfam_Histone_H1/H5_H15,smart_Histone_H1/H5_H15,prints_Histone_H5	pfam_Histone_H1/H5_H15,smart_Histone_H1/H5_H15,prints_Histone_H5	-	no_errors	HIST1H1A	HGNC	ENSG00000124610				80	0	0	82	5	5.74713
BTN2A3P	0	genome.wustl.edu	37	6	26428209	26428210	+	RNA	INS	-	-	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	6	26428209	26428210	-	A	INS	BTN2A3P	ENST00000463944	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	BTN2A3P	HGNC	ENSG00000124549				101	0	0	91	6	6.18557
FLOT1	0	genome.wustl.edu	37	6	30708321	30708321	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	6	30708321	30708321	T	-	DEL	FLOT1	ENST00000376389	human	ensembl	74_37	-1	known	frame_shift_del	c.522	p.D175fs	1.000	pfam_Band_7,smart_Band_7	pfam_Band_7,smart_Band_7	-	no_errors	FLOT1	HGNC	ENSG00000137312				132	0	0	124	21	14.4828
TBC1D22B	0	genome.wustl.edu	37	6	37250062	37250063	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	6	37250062	37250063	-	C	INS	TBC1D22B	ENST00000373491	human	ensembl	74_37	+1	known	frame_shift_ins	c.523_524	p.M178fs	1.000:0.996	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D22B	HGNC	ENSG00000065491				63	0	0	55	10	15.3846
DST	0	genome.wustl.edu	37	6	56374465	56374465	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	6	56374465	56374465	C	-	DEL	DST	ENST00000370754	human	ensembl	74_37	-1	known	frame_shift_del	c.18894	p.T6299fs	0.027	superfamily_ABC1_TM_dom,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_dom,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	DST	HGNC	ENSG00000151914				81	0	0	47	11	18.9655
PHF3	0	genome.wustl.edu	37	6	64408416	64408417	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	6	64408416	64408417	-	T	INS	PHF3	ENST00000262043	human	ensembl	74_37	+1	known	frame_shift_ins	c.2903_2904	p.R971fs	0.995:0.990	pfam_TFIIS_cen_dom,superfamily_TFIIS_cen_dom,smart_TFS2M	pfam_TFIIS_cen_dom,pfam_SPOC_C,pfam_Znf_PHD-finger,superfamily_TFIIS_cen_dom,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_TFS2M,pfscan_Znf_PHD-finger	-	no_errors	PHF3	HGNC	ENSG00000118482				104	0	0	44	14	24.1379
TTK	0	genome.wustl.edu	37	6	80751897	80751897	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	6	80751897	80751897	A	-	DEL	TTK	ENST00000369798	human	ensembl	74_37	+1	known	frame_shift_del	c.2552	p.R854fs	0.102	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TTK	HGNC	ENSG00000112742				127	0	0	70	9	11.3924
ZNF292	0	genome.wustl.edu	37	6	87969484	87969484	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	6	87969484	87969484	A	-	DEL	ZNF292	ENST00000369577	human	ensembl	74_37	+1	known	frame_shift_del	c.6137	p.S2049fs	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF292	HGNC	ENSG00000188994				22	0	0	11	7	38.8889
NYAP1	0	genome.wustl.edu	37	7	100087051	100087052	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	7	100087051	100087052	-	G	INS	NYAP1	ENST00000423930	human	ensembl	74_37	+1	known	frame_shift_ins	c.1707_1708	p.V571fs	0.997:1.000	NULL	NULL	-	no_errors	NYAP1	HGNC	ENSG00000166924				54	0	0	63	7	10
SRRT	0	genome.wustl.edu	37	7	100484536	100484539	+	Frame_Shift_Del	DEL	AAGG	AAGG	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	AAGG	AAGG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	7	100484536	100484539	AAGG	-	DEL	SRRT	ENST00000388793	human	ensembl	74_37	+1	known	frame_shift_del	c.1765_1768	p.E590fs	1.000:1.000:1.000:1.000	NULL	pfam_Arsenite-R_2,pfam_DUF3546	-	no_errors	SRRT	HGNC	ENSG00000087087				112	0	0	137	15	9.86842
AP1S1	0	genome.wustl.edu	37	7	100802405	100802405	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	7	100802405	100802405	G	-	DEL	AP1S1	ENST00000337619	human	ensembl	74_37	+1	known	frame_shift_del	c.357	p.D122fs	1.000	pfam_AP_mu_sigma_su,superfamily_Longin-like_dom,pirsf_AP_complex_ssu	pfam_AP_mu_sigma_su,superfamily_Longin-like_dom,pirsf_AP_complex_ssu	-	no_errors	AP1S1	HGNC	ENSG00000106367				50	0	0	51	11	17.7419
DNAJC2	0	genome.wustl.edu	37	7	102964991	102964992	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	7	102964991	102964992	-	T	INS	DNAJC2	ENST00000379263	human	ensembl	74_37	-1	known	frame_shift_ins	c.591_590	p.N197fs	1.000:1.000	NULL	pfam_SANT/Myb,pfam_DnaJ_domain,superfamily_DnaJ_domain,superfamily_Homeodomain-like,smart_DnaJ_domain,smart_SANT/Myb,pfscan_Myb-like_dom,pfscan_DnaJ_domain	-	no_errors	DNAJC2	HGNC	ENSG00000105821				116	0	0	65	5	7.14286
PRKAR2B	0	genome.wustl.edu	37	7	106799946	106799947	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	7	106799946	106799947	-	A	INS	PRKAR2B	ENST00000265717	human	ensembl	74_37	+1	known	frame_shift_ins	c.1176_1177	p.R393fs	1.000:1.000	superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pirsf_cAMP_dep_PK_reg_su,pfscan_cNMP-bd_dom,prints_cAMP/cGMP_kin	pfam_cNMP-bd_dom,pfam_cAMP_dep_PK_reg_su_I/II_a/b,superfamily_cNMP-bd-like,superfamily_cAMP_dep_PK_reg_su_I/II_a/b,smart_cAMP_dep_PK_reg_su_I/II_a/b,smart_cNMP-bd_dom,pirsf_cAMP_dep_PK_reg_su,pfscan_cNMP-bd_dom,prints_cAMP/cGMP_kin	-	no_errors	PRKAR2B	HGNC	ENSG00000005249				101	0	0	69	16	18.8235
LAMB1	0	genome.wustl.edu	37	7	107572748	107572751	+	Frame_Shift_Del	DEL	TCCT	TCCT	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	TCCT	TCCT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	7	107572748	107572751	TCCT	-	DEL	LAMB1	ENST00000222399	human	ensembl	74_37	-1	known	frame_shift_del	c.4263_4260	p.G1421fs	0.085:1.000:1.000:0.455	NULL	pfam_EGF_laminin,pfam_Laminin_N,superfamily_Prefoldin,superfamily_t-SNARE,superfamily_P-loop_NTPase,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,pfscan_Laminin_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB1	HGNC	ENSG00000091136				157	0	0	164	14	7.86517
EPHA1	0	genome.wustl.edu	37	7	143095887	143095887	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	7	143095887	143095887	C	-	DEL	EPHA1	ENST00000275815	human	ensembl	74_37	-1	known	frame_shift_del	c.1143	p.C383fs	0.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Kinase-like_dom,superfamily_Galactose-bd-like,superfamily_SAM/pointed,superfamily_Fibronectin_type3,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHA1	HGNC	ENSG00000146904				45	0	0	61	5	7.57576
CARD11	0	genome.wustl.edu	37	7	2968323	2968323	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	7	2968323	2968323	G	-	DEL	CARD11	ENST00000396946	human	ensembl	74_37	-1	known	frame_shift_del	c.1663	p.R555fs	0.080	NULL	pfam_CARD,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,superfamily_PDZ,pfscan_CARD	-	no_errors	CARD11	HGNC	ENSG00000198286				70	0	0	96	13	11.9266
NEUROD6	0	genome.wustl.edu	37	7	31378635	31378635	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	7	31378635	31378635	T	-	DEL	NEUROD6	ENST00000297142	human	ensembl	74_37	-1	known	frame_shift_del	c.248	p.K83fs	1.000	pirsf_TF_bHLH_NeuroD	pfam_Neurogenic_DUF,pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pirsf_TF_bHLH_NeuroD,pfscan_bHLH_dom	-	no_errors	NEUROD6	HGNC	ENSG00000164600				316	0	0	329	19	5.45977
SFRP4	0	genome.wustl.edu	37	7	37951761	37951761	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	7	37951761	37951761	G	-	DEL	SFRP4	ENST00000436072	human	ensembl	74_37	-1	known	frame_shift_del	c.751	p.H251fs	0.999	pfam_Netrin_module_non-TIMP,superfamily_TIMP-like_OB-fold,smart_Netrin_module_non-TIMP,pfscan_Netrin_domain	pfam_Frizzled_dom,pfam_Netrin_module_non-TIMP,superfamily_Frizzled_dom,superfamily_TIMP-like_OB-fold,smart_Frizzled_dom,smart_Netrin_module_non-TIMP,pfscan_Frizzled_dom,pfscan_Netrin_domain	-	no_errors	SFRP4	HGNC	ENSG00000106483				189	0	0	142	14	8.97436
VPS41	0	genome.wustl.edu	37	7	38810820	38810820	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	7	38810820	38810820	T	-	DEL	VPS41	ENST00000310301	human	ensembl	74_37	-1	known	frame_shift_del	c.1163	p.N388fs	1.000	pirsf_VPS41	pfam_Clathrin_H-chain/VPS_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Clathrin_H-chain/VPS_repeat,pirsf_VPS41,pfscan_Znf_RING	-	no_errors	VPS41	HGNC	ENSG00000006715				86	0	0	50	17	25.3731
CDK13	0	genome.wustl.edu	37	7	40102647	40102647	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	7	40102647	40102647	A	-	DEL	CDK13	ENST00000181839	human	ensembl	74_37	+1	known	frame_shift_del	c.2728	p.K911fs	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDK13	HGNC	ENSG00000065883				116	0	0	107	27	20.1493
PAPOLB	0	genome.wustl.edu	37	7	4900105	4900105	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	7	4900105	4900105	T	-	DEL	PAPOLB	ENST00000404991	human	ensembl	74_37	-1	known	frame_shift_del	c.1334	p.K445fs	0.498	pfam_PolA_pol_RNA-bd_dom,superfamily_NuclTrfase_I_C,pirsf_PolyA_polymerase	pfam_PolA_pol_cen_dom,pfam_PolA_pol_RNA-bd_dom,pfam_Nucleotidyltransferase,superfamily_NuclTrfase_I_C,pirsf_PolyA_polymerase	-	no_errors	PAPOLB	HGNC	ENSG00000218823				190	0	0	174	15	7.93651
ACTB	0	genome.wustl.edu	37	7	5568135	5568137	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	GAG	GAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	7	5568135	5568137	GAG	-	DEL	ACTB	ENST00000331789	human	ensembl	74_37	-1	known	in_frame_del	c.579_577	p.L193in_frame_del	1.000:1.000:1.000	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,smart_Actin-related,prints_Actin-related	-	no_errors	ACTB	HGNC	ENSG00000075624				113	0	0	99	37	27.2059
AKAP9	0	genome.wustl.edu	37	7	91732039	91732039	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	7	91732039	91732039	G	-	DEL	AKAP9	ENST00000359028	human	ensembl	74_37	+1	known	frame_shift_del	c.11241	p.Q3750fs	1.000	pfam_PACT_domain	pfam_PACT_domain,superfamily_Prefoldin,superfamily_YbaB	-	no_errors	AKAP9	HGNC	ENSG00000127914				222	0	0	222	24	9.7561
FAM133B	0	genome.wustl.edu	37	7	92208639	92208639	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	7	92208639	92208639	T	-	DEL	FAM133B	ENST00000445716	human	ensembl	74_37	-1	known	frame_shift_del	c.193	p.M65fs	1.000	NULL	NULL	-	no_errors	FAM133B	HGNC	ENSG00000234545				57	0	0	38	18	32.1429
LRP12	0	genome.wustl.edu	37	8	105509429	105509429	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	8	105509429	105509429	A	-	DEL	LRP12	ENST00000424843	human	ensembl	74_37	-1	known	frame_shift_del	c.1294	p.C432fs	1.000	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_CUB_dom,pfam_LDrepeatLR_classA_rpt,superfamily_CUB_dom,superfamily_LDrepeatLR_classA_rpt,smart_CUB_dom,smart_LDrepeatLR_classA_rpt,pfscan_CUB_dom,pfscan_LDrepeatLR_classA_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP12	HGNC	ENSG00000147650				126	1	0.787402	86	29	25.2174
FAM86B2	0	genome.wustl.edu	37	8	12285156	12285156	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	8	12285156	12285156	G	-	DEL	FAM86B2	ENST00000393715	human	ensembl	74_37	-1	known	frame_shift_del	c.218	p.P73fs	0.012	NULL	NULL	-	no_errors	FAM86B2	HGNC	ENSG00000145002				116	0	0	106	12	10.1695
ADAM28	0	genome.wustl.edu	37	8	24167472	24167473	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	8	24167472	24167473	-	A	INS	ADAM28	ENST00000265769	human	ensembl	74_37	+1	known	frame_shift_ins	c.216_217	p.N74fs	1.000:1.000	pfam_Peptidase_M12B_N	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM28	HGNC	ENSG00000042980				132	0	0	88	15	14.5631
STXBP1	0	genome.wustl.edu	37	9	130453135	130453135	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	9	130453135	130453135	A	-	DEL	STXBP1	ENST00000373299	human	ensembl	74_37	+1	known	frame_shift_del	c.1784	p.*595fs	1.000	NULL	pfam_Sec1-like,superfamily_Sec1-like	-	no_errors	STXBP1	HGNC	ENSG00000136854				138	0	0	112	22	16.4179
PIP5KL1	0	genome.wustl.edu	37	9	130687534	130687534	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	9	130687534	130687534	G	-	DEL	PIP5KL1	ENST00000300432	human	ensembl	74_37	-1	known	frame_shift_del	c.160	p.Q54fs	1.000	pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub	pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub	-	no_errors	PIP5KL1	HGNC	ENSG00000167103				50	0	0	59	9	13.2353
ODF2	0	genome.wustl.edu	37	9	131256894	131256895	+	Frame_Shift_Del	DEL	TA	TA	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	TA	TA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	9	131256894	131256895	TA	-	DEL	ODF2	ENST00000434106	human	ensembl	74_37	+1	known	frame_shift_del	c.1858_1859	p.Y620fs	1.000:0.994	NULL	NULL	-	no_errors	ODF2	HGNC	ENSG00000136811				96	0	0	57	16	21.9178
PKN3	0	genome.wustl.edu	37	9	131476550	131476550	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	9	131476550	131476550	C	-	DEL	PKN3	ENST00000291906	human	ensembl	74_37	+1	known	frame_shift_del	c.1387	p.C465fs	1.000	NULL	pfam_Prot_kinase_dom,pfam_HR1_rho-bd,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_HR1_rho-bd,superfamily_C2_dom,smart_HR1_rho-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_dom	-	no_errors	PKN3	HGNC	ENSG00000160447				132	0	0	163	33	16.8367
TRAF2	0	genome.wustl.edu	37	9	139802655	139802655	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	9	139802655	139802655	G	-	DEL	TRAF2	ENST00000359662	human	ensembl	74_37	+1	known	frame_shift_del	c.656	p.A220fs	0.188	pirsf_TNF_rcpt--assoc_TRAF,pfscan_Znf_TRAF	pfam_MATH,pfam_Znf_C3HC4_RING-type,superfamily_TRAF-like,smart_Znf_RING,smart_MATH,pirsf_TNF_rcpt--assoc_TRAF,pfscan_MATH,pfscan_Znf_RING,pfscan_Znf_TRAF	-	no_errors	TRAF2	HGNC	ENSG00000127191				19	0	0	20	9	31.0345
CNTLN	0	genome.wustl.edu	37	9	17484353	17484353	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	9	17484353	17484353	A	-	DEL	CNTLN	ENST00000380647	human	ensembl	74_37	+1	known	frame_shift_del	c.3916	p.M1308fs	0.999	NULL	superfamily_Prefoldin	-	no_errors	CNTLN	HGNC	ENSG00000044459				192	0	0	117	27	18.75
ERMP1	0	genome.wustl.edu	37	9	5801292	5801292	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	9	5801292	5801292	T	-	DEL	ERMP1	ENST00000339450	human	ensembl	74_37	-1	known	frame_shift_del	c.1951	p.T651fs	0.994	NULL	pfam_Peptidase_M28,pfam_Peptidase_M20	-	no_errors	ERMP1	HGNC	ENSG00000099219				81	0	0	35	10	22.2222
PTCH1	0	genome.wustl.edu	37	9	98209617	98209617	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	9	98209617	98209617	G	-	DEL	PTCH1	ENST00000331920	human	ensembl	74_37	-1	known	frame_shift_del	c.3921	p.R1308fs	0.441	NULL	pfam_Patched,pfscan_SSD,tigrfam_TM_rcpt_patched	-	no_errors	PTCH1	HGNC	ENSG00000185920				139	0	0	112	19	14.5038
TLR8	0	genome.wustl.edu	37	X	12937531	12937531	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	X	12937531	12937531	A	-	DEL	TLR8	ENST00000218032	human	ensembl	74_37	+1	known	frame_shift_del	c.372	p.N126fs	0.003	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_TIR_dom,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR8	HGNC	ENSG00000101916				250	0	0	175	13	6.91489
MST4	0	genome.wustl.edu	37	X	131203604	131203605	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	X	131203604	131203605	-	A	INS	MST4	ENST00000394334	human	ensembl	74_37	+1	known	frame_shift_ins	c.696_697	p.N233fs	1.000:1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MST4	Uniprot_gn	ENSG00000134602				86	0	0	38	8	17.3913
MAP7D3	0	genome.wustl.edu	37	X	135314194	135314194	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	X	135314194	135314194	G	-	DEL	MAP7D3	ENST00000370663	human	ensembl	74_37	-1	known	frame_shift_del	c.868	p.Q290fs	0.000	NULL	pfam_MAP7	-	no_errors	MAP7D3	HGNC	ENSG00000129680				352	0	0	303	56	15.5989
MOSPD2	0	genome.wustl.edu	37	X	14933883	14933883	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	X	14933883	14933883	G	-	DEL	MOSPD2	ENST00000380492	human	ensembl	74_37	+1	known	frame_shift_del	c.1183	p.G396fs	1.000	pfam_MSP_dom,superfamily_PapD-like,pfscan_MSP_dom	pfam_CRAL-TRIO_dom,pfam_MSP_dom,superfamily_CRAL-TRIO_dom,superfamily_PapD-like,superfamily_CRAL/TRIO_N_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_MSP_dom	-	no_errors	MOSPD2	HGNC	ENSG00000130150				123	0	0	135	14	9.39597
CSAG1	0	genome.wustl.edu	37	X	151908802	151908803	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	X	151908802	151908803	-	G	INS	CSAG1	ENST00000370287	human	ensembl	74_37	+1	known	frame_shift_ins	c.41_42	p.E16fs	0.020:0.013	NULL	NULL	-	no_errors	CSAG1	HGNC	ENSG00000198930				291	1	0.342466	220	42	16.0305
BCAP31	0	genome.wustl.edu	37	X	152988709	152988711	+	In_Frame_Del	DEL	AGA	AGA	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	X	152988709	152988711	AGA	-	DEL	BCAP31	ENST00000458587	human	ensembl	74_37	-1	known	in_frame_del	c.192_190	p.S65in_frame_del	0.010:0.015:0.013	NULL	pfam_Bap31	-	no_errors	BCAP31	HGNC	ENSG00000185825				30	0	0	19	6	24
SRPX	0	genome.wustl.edu	37	X	38033445	38033445	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	X	38033445	38033445	T	-	DEL	SRPX	ENST00000378533	human	ensembl	74_37	-1	known	frame_shift_del	c.317	p.N106fs	1.000	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Hyalin,pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Hyalin,pfscan_Sushi_SCR_CCP	-	no_errors	SRPX	HGNC	ENSG00000101955				133	0	0	69	23	25
HUWE1	0	genome.wustl.edu	37	X	53562382	53562384	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	X	53562382	53562384	CTT	-	DEL	HUWE1	ENST00000262854	human	ensembl	74_37	-1	known	in_frame_del	c.12612_12610	p.K4204in_frame_del	1.000:1.000:1.000	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_E3_Ub_ligase_DUF913,pfam_HECT,pfam_E3_Ub_ligase_DUF908,pfam_WWE-dom,pfam_UBA/Ts_N,superfamily_HECT,superfamily_UBA-like,superfamily_ARM-type_fold,smart_UBA/transl_elong_EF1B_N_euk,smart_HECT,pfscan_HECT,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_WWE-dom	-	no_errors	HUWE1	HGNC	ENSG00000086758				105	0	0	82	10	10.8696
XIST	0	genome.wustl.edu	37	X	73070114	73070114	+	RNA	DEL	A	A	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	X	73070114	73070114	A	-	DEL	XIST	ENST00000429829	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	XIST	HGNC	ENSG00000229807				68	0	0	40	7	14.8936
XIST	0	genome.wustl.edu	37	X	73071846	73071846	+	RNA	DEL	A	A	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	X	73071846	73071846	A	-	DEL	XIST	ENST00000429829	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	XIST	HGNC	ENSG00000229807				33	0	0	31	8	20.5128
ATRX	0	genome.wustl.edu	37	X	76907782	76907784	+	In_Frame_Del	DEL	TCC	TCC	-			TCGA-BR-6566-01A-11D-1800-08	TCGA-BR-6566-10A-01D-1800-08	TCC	TCC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1711a24c-b7ae-4201-9f26-cf2403a84f40	fecaae37-316f-4955-9ae6-ba247f6813bf	X	76907782	76907784	TCC	-	DEL	ATRX	ENST00000373344	human	ensembl	74_37	-1	known	in_frame_del	c.4379_4377	p.E1463in_frame_del	0.844:0.838:0.239	NULL	pfam_SNF2_N,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Znf_FYVE_PHD,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ATRX	HGNC	ENSG00000085224				171	0	0	109	32	22.695
