Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
CHIA	0	genome.wustl.edu	37	1	111862929	111862929	+	Silent	SNP	G	G	T			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	1	111862929	111862929	G	T	SNP	CHIA	ENST00000343320	human	ensembl	74_37	+1	known	silent	c.1272	p.S424	0.154	NULL	pfam_Glyco_hydro18cat,pfam_Chitin-bd_dom,superfamily_Glycoside_hydrolase_SF,superfamily_Chitin-bd_dom,smart_Chitinase_II,smart_Chitin-bd_dom,pfscan_Chitin-bd_dom	-	no_errors	CHIA	HGNC	ENSG00000134216				70	0	0	38	3	7.31707
PLOD1	0	genome.wustl.edu	37	1	12008083	12008083	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	1	12008083	12008083	C	T	SNP	PLOD1	ENST00000376369	human	ensembl	74_37	+1	known	missense	c.268	p.R90C	0.999	NULL	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	PLOD1	HGNC	ENSG00000083444				130	0	0	113	6	5.04202
CD1D	0	genome.wustl.edu	37	1	158151974	158151974	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	1	158151974	158151974	T	G	SNP	CD1D	ENST00000368171	human	ensembl	74_37	+1	known	missense	c.481	p.L161V	0.000	superfamily_MHC_I/II-like_Ag-recog	pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	CD1D	HGNC	ENSG00000158473				301	1	0.331126	256	53	17.1521
OR10R2	0	genome.wustl.edu	37	1	158449804	158449804	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	1	158449804	158449804	C	A	SNP	OR10R2	ENST00000368152	human	ensembl	74_37	+1	known	missense	c.137	p.A46D	0.000	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10R2	HGNC	ENSG00000198965				149	0	0	157	12	7.10059
SPTA1	0	genome.wustl.edu	37	1	158646087	158646087	+	Splice_Site	SNP	T	T	G			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	1	158646087	158646087	T	G	SNP	SPTA1	ENST00000368147	human	ensembl	74_37	-1	known	splice_site	c.958-2	e8-2	1.000	-	-	-	no_errors	SPTA1	HGNC	ENSG00000163554				183	0	0	161	17	9.55056
USH2A	0	genome.wustl.edu	37	1	215901420	215901420	+	Silent	SNP	G	G	A			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	1	215901420	215901420	G	A	SNP	USH2A	ENST00000366943	human	ensembl	74_37	-1	known	silent	c.12018	p.P4006	0.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781				184	0	0	147	24	14.0351
OR2AK2	0	genome.wustl.edu	37	1	248129101	248129101	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	1	248129101	248129101	C	A	SNP	OR2AK2	ENST00000366480	human	ensembl	74_37	+1	known	nonsense	c.468	p.C156*	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2AK2	HGNC	ENSG00000187080				211	0	0	180	41	18.552
EPB41	0	genome.wustl.edu	37	1	29391555	29391555	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	1	29391555	29391555	A	T	SNP	EPB41	ENST00000343067	human	ensembl	74_37	+1	known	missense	c.2069	p.K690M	1.000	pirsf_Band_41_protein,pfam_SAB_dom	pirsf_Band_41_protein,pfam_Band_4.1_C,pfam_SAB_dom,pfam_FERM_PH-like_C,pfam_FERM_N,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like,pfscan_FERM_domain	-	no_errors	EPB41	HGNC	ENSG00000159023				77	0	0	73	7	8.75
POU3F1	0	genome.wustl.edu	37	1	38511541	38511541	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	1	38511541	38511541	G	T	SNP	POU3F1	ENST00000373012	human	ensembl	74_37	-1	known	missense	c.875	p.T292N	1.000	pfam_POU_specific,superfamily_Lambda_DNA-bd_dom,smart_POU_specific,pirsf_Transcription_factor_POU,pfscan_POU_specific,prints_POU	pfam_POU_specific,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeobox_dom,pirsf_Transcription_factor_POU,pfscan_Homeobox_dom,pfscan_POU_specific,prints_POU	-	no_errors	POU3F1	HGNC	ENSG00000185668				115	0	0	99	10	9.17431
FBXW4	0	genome.wustl.edu	37	10	103371080	103371080	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	10	103371080	103371080	T	A	SNP	FBXW4	ENST00000331272	human	ensembl	74_37	-1	known	missense	c.1207	p.N403Y	0.985	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_F-box_dom,smart_WD40_repeat,pfscan_F-box_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	FBXW4	HGNC	ENSG00000107829				93	0	0	68	11	13.9241
SORCS1	0	genome.wustl.edu	37	10	108389026	108389026	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	10	108389026	108389026	G	A	SNP	SORCS1	ENST00000344440	human	ensembl	74_37	-1	known	missense	c.2596	p.R866C	1.000	pfam_PKD_dom,superfamily_PKD_dom,pfscan_PKD_dom	pfam_PKD_dom,superfamily_PKD_dom,smart_VPS10,pfscan_PKD_dom	-	no_errors	SORCS1	HGNC	ENSG00000108018				37	0	0	31	5	13.8889
CDH23	0	genome.wustl.edu	37	10	73544820	73544820	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	10	73544820	73544820	C	T	SNP	CDH23	ENST00000224721	human	ensembl	74_37	+1	putative	missense	c.5690	p.A1897V	0.999	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH23	HGNC	ENSG00000107736				113	0	0	72	5	6.49351
MMRN2	0	genome.wustl.edu	37	10	88696877	88696877	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	10	88696877	88696877	G	T	SNP	MMRN2	ENST00000372027	human	ensembl	74_37	-1	known	missense	c.2473	p.P825T	0.813	superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q	pfam_C1q,pfam_EMI_domain,superfamily_Tumour_necrosis_fac-like_dom,superfamily_tRNA-bd_arm,smart_C1q,prints_C1q,pfscan_C1q,pfscan_EMI_domain	-	no_errors	MMRN2	HGNC	ENSG00000173269				37	0	0	35	2	5.40541
NUTM2A	0	genome.wustl.edu	37	10	88988555	88988555	+	Silent	SNP	C	C	T			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	10	88988555	88988555	C	T	SNP	NUTM2A	ENST00000381707	human	ensembl	74_37	+1	known	silent	c.918	p.H306	0.000	NULL	NULL	-	no_errors	NUTM2A	HGNC	ENSG00000184923				12	0	0	6	3	33.3333
TRPC6	0	genome.wustl.edu	37	11	101347160	101347160	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	11	101347160	101347160	G	T	SNP	TRPC6	ENST00000344327	human	ensembl	74_37	-1	known	missense	c.1616	p.A539E	1.000	pfam_Ion_trans_dom,pfam_PKD1_2_channel,tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,pfam_PKD1_2_channel,superfamily_Ankyrin_rpt-contain_dom,superfamily_ARM-type_fold,smart_Ankyrin_rpt,prints_TRPC6_channel,prints_TRPC_channel,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,tigrfam_TRP_channel	-	no_errors	TRPC6	HGNC	ENSG00000137672				79	0	0	48	4	7.69231
MRVI1	0	genome.wustl.edu	37	11	10622545	10622545	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	11	10622545	10622545	G	A	SNP	MRVI1	ENST00000421747	human	ensembl	74_37	-1	known	missense	c.1910	p.T637M	1.000	pfam_MRVI1	pfam_MRVI1	-	no_errors	MRVI1	HGNC	ENSG00000072952				354	0	0	250	28	10.0719
HINFP	0	genome.wustl.edu	37	11	119004822	119004822	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	11	119004822	119004822	C	T	SNP	HINFP	ENST00000350777	human	ensembl	74_37	+1	known	missense	c.1168	p.R390W	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HINFP	HGNC	ENSG00000172273				84	0	0	66	11	14.2857
NLRX1	0	genome.wustl.edu	37	11	119052840	119052840	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	11	119052840	119052840	G	A	SNP	NLRX1	ENST00000292199	human	ensembl	74_37	+1	known	missense	c.2392	p.V798M	0.000	smart_Leu-rich_rpt_RNase_inh_sub-typ	superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase	-	no_errors	NLRX1	HGNC	ENSG00000160703				204	1	0.487805	182	22	10.7843
PACSIN3	0	genome.wustl.edu	37	11	47199566	47199566	+	Silent	SNP	G	G	A			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	11	47199566	47199566	G	A	SNP	PACSIN3	ENST00000298838	human	ensembl	74_37	-1	known	silent	c.1191	p.D397	0.967	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_FCH_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_FCH_dom,smart_SH3_domain,pfscan_FCH_dom,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	PACSIN3	HGNC	ENSG00000165912				50	0	0	33	3	8.33333
OR5T3	0	genome.wustl.edu	37	11	56020552	56020552	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	11	56020552	56020552	A	T	SNP	OR5T3	ENST00000303059	human	ensembl	74_37	+1	known	missense	c.877	p.S293C	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5T3	HGNC	ENSG00000172489				141	0	0	114	8	6.55738
MALAT1	0	genome.wustl.edu	37	11	65270134	65270134	+	RNA	SNP	T	T	A			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	11	65270134	65270134	T	A	SNP	MALAT1	ENST00000508832	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MALAT1	HGNC	ENSG00000251562				59	0	0	51	4	7.27273
MTL5	0	genome.wustl.edu	37	11	68475799	68475799	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	11	68475799	68475799	A	G	SNP	MTL5	ENST00000255087	human	ensembl	74_37	-1	known	missense	c.1504	p.S502P	0.999	NULL	pfam_CRC,superfamily_Thionin	-	no_errors	MTL5	HGNC	ENSG00000132749				94	0	0	84	6	6.66667
IGHMBP2	0	genome.wustl.edu	37	11	68673617	68673617	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	11	68673617	68673617	G	A	SNP	IGHMBP2	ENST00000255078	human	ensembl	74_37	+1	known	missense	c.167	p.R56H	1.000	tigrfam_DNA_helicase_put	pfam_R3H_ss-bd,pfam_Znf_AN1,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_AAA+_ATPase,smart_R3H_ss-bd,smart_Znf_AN1,pfscan_Znf_AN1,pfscan_R3H_ss-bd,tigrfam_DNA_helicase_put	-	no_errors	IGHMBP2	HGNC	ENSG00000132740				111	0	0	118	14	10.6061
DLG2	0	genome.wustl.edu	37	11	84996402	84996402	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	11	84996402	84996402	T	G	SNP	DLG2	ENST00000376104	human	ensembl	74_37	-1	known	missense	c.48	p.Q16H	1.000	pfam_L27_1,pfscan_L27	pfam_PDZ,pfam_GK/Ca_channel_bsu,pfam_MAGUK_PEST_N,pfam_PDZ_assoc,pfam_L27_1,pfam_SH3_2,pfam_SH3_domain,superfamily_P-loop_NTPase,superfamily_SH3_domain,superfamily_PDZ,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pirsf_M-assoc_guanylate_kinase,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like	-	no_errors	DLG2	HGNC	ENSG00000150672				129	0	0	97	9	8.49057
ANO4	0	genome.wustl.edu	37	12	101333096	101333096	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	12	101333096	101333096	C	T	SNP	ANO4	ENST00000392977	human	ensembl	74_37	+1	known	missense	c.164	p.A55V	1.000	NULL	pfam_Anoctamin	-	no_errors	ANO4	HGNC	ENSG00000151572				111	0	0	98	10	9.25926
MYO1H	0	genome.wustl.edu	37	12	109845697	109845697	+	Silent	SNP	C	C	T			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	12	109845697	109845697	C	T	SNP	MYO1H	ENST00000431443	human	ensembl	74_37	+1	known	silent	c.1086	p.I362	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYO1H	HGNC	ENSG00000174527				63	0	0	58	10	14.7059
KRAS	0	genome.wustl.edu	37	12	25378594	25378594	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	12	25378594	25378594	C	G	SNP	KRAS	ENST00000256078	human	ensembl	74_37	-1	known	missense	c.404	p.R135T	1.000	pfam_Small_GTPase,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	KRAS	HGNC	ENSG00000133703				121	0	0	408	24	5.55556
METTL3	0	genome.wustl.edu	37	14	21979360	21979360	+	Silent	SNP	C	C	T			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	14	21979360	21979360	C	T	SNP	METTL3	ENST00000298717	human	ensembl	74_37	-1	known	silent	c.6	p.S2	1.000	NULL	pfam_MT-A70-like,pfscan_MT-A70-like	-	no_errors	METTL3	HGNC	ENSG00000165819				19	0	0	27	2	6.89655
AKAP6	0	genome.wustl.edu	37	14	33293356	33293356	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	14	33293356	33293356	T	G	SNP	AKAP6	ENST00000280979	human	ensembl	74_37	+1	known	missense	c.6337	p.L2113V	1.000	NULL	smart_Spectrin/alpha-actinin	-	no_errors	AKAP6	HGNC	ENSG00000151320				143	0	0	134	13	8.84354
GALNT16	0	genome.wustl.edu	37	14	69787487	69787487	+	Silent	SNP	G	G	A			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	14	69787487	69787487	G	A	SNP	GALNT16	ENST00000337827	human	ensembl	74_37	+1	known	silent	c.237	p.L79	1.000	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT16	HGNC	ENSG00000100626				122	0	0	104	6	5.45455
VASH1	0	genome.wustl.edu	37	14	77242566	77242566	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	14	77242566	77242566	G	A	SNP	VASH1	ENST00000167106	human	ensembl	74_37	+1	known	missense	c.862	p.D288N	1.000	NULL	NULL	-	no_errors	VASH1	HGNC	ENSG00000071246				32	0	0	35	4	10.2564
SNORD116-29	0	genome.wustl.edu	37	15	25351694	25351694	+	RNA	SNP	A	A	C			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	15	25351694	25351694	A	C	SNP	SNORD116-29	ENST00000384516	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SNORD116-29	HGNC	ENSG00000207245				81	0	0	63	6	8.69565
MMP25	0	genome.wustl.edu	37	16	3100096	3100096	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	16	3100096	3100096	C	T	SNP	MMP25	ENST00000336577	human	ensembl	74_37	+1	known	missense	c.319	p.R107W	0.336	pirsf_Pept_M10A_Metazoans	pirsf_Pept_M10A_Metazoans,pfam_Pept_M10_metallopeptidase,pfam_Hemopexin-like_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin-like_repeat,prints_Pept_M10A	-	no_errors	MMP25	HGNC	ENSG00000008516				107	0	0	101	19	15.8333
ITGAX	0	genome.wustl.edu	37	16	31371109	31371109	+	Silent	SNP	C	C	T			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	16	31371109	31371109	C	T	SNP	ITGAX	ENST00000268296	human	ensembl	74_37	+1	known	silent	c.519	p.F173	0.688	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGAX	HGNC	ENSG00000140678				91	0	0	76	7	8.43373
ZNF200	0	genome.wustl.edu	37	16	3274181	3274181	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	16	3274181	3274181	C	T	SNP	ZNF200	ENST00000414144	human	ensembl	74_37	-1	known	missense	c.899	p.R300Q	0.998	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF200	HGNC	ENSG00000010539				122	0	0	123	9	6.81818
SLC6A10P	0	genome.wustl.edu	37	16	32894109	32894109	+	RNA	SNP	C	C	T			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	16	32894109	32894109	C	T	SNP	SLC6A10P	ENST00000330048	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.006	-	-	-	no_errors	SLC6A10P	HGNC	ENSG00000214617				12	0	0	6	4	40
AXIN1	0	genome.wustl.edu	37	16	354351	354351	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	16	354351	354351	G	A	SNP	AXIN1	ENST00000262320	human	ensembl	74_37	-1	known	missense	c.1207	p.R403W	0.910	NULL	pfam_DIX,pfam_RGS_dom,pfam_Axin_b-cat-bd,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,smart_DIX,pfscan_DIX,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	AXIN1	HGNC	ENSG00000103126				65	0	0	54	5	8.47458
RILP	0	genome.wustl.edu	37	17	1551670	1551670	+	Silent	SNP	G	G	T			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	17	1551670	1551670	G	T	SNP	RILP	ENST00000301336	human	ensembl	74_37	-1	known	silent	c.795	p.L265	1.000	pfam_RILP	pfam_RILP,pfam_JNK/Rab-associated_protein-1_N	-	no_errors	RILP	HGNC	ENSG00000167705				43	0	0	31	2	6.06061
ITGA2B	0	genome.wustl.edu	37	17	42455111	42455111	+	Silent	SNP	C	C	T			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	17	42455111	42455111	C	T	SNP	ITGA2B	ENST00000262407	human	ensembl	74_37	-1	known	silent	c.2142	p.R714	0.994	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA2B	HGNC	ENSG00000005961				74	0	0	70	4	5.40541
B4GALNT2	0	genome.wustl.edu	37	17	47241497	47241497	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	17	47241497	47241497	C	T	SNP	B4GALNT2	ENST00000300404	human	ensembl	74_37	+1	known	missense	c.994	p.R332C	1.000	pfam_Glyco_trans_2,pirsf_GM2_synthase	pfam_Glyco_trans_2,pirsf_GM2_synthase	-	no_errors	B4GALNT2	HGNC	ENSG00000167080				245	1	0.406504	199	19	8.7156
MPO	0	genome.wustl.edu	37	17	56356886	56356886	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	17	56356886	56356886	G	C	SNP	MPO	ENST00000340482	human	ensembl	74_37	-1	known	missense	c.546	p.N182K	1.000	superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	-	no_errors	MPO	HGNC	ENSG00000005381				31	0	0	31	3	8.82353
MGAT5B	0	genome.wustl.edu	37	17	74928759	74928759	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	17	74928759	74928759	G	A	SNP	MGAT5B	ENST00000428789	human	ensembl	74_37	+1	known	missense	c.1357	p.V453M	1.000	NULL	superfamily_PyrdxlP-dep_Trfase	-	no_errors	MGAT5B	HGNC	ENSG00000167889				143	0	0	105	7	6.25
MFSD6L	0	genome.wustl.edu	37	17	8701293	8701293	+	Silent	SNP	G	G	A			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	17	8701293	8701293	G	A	SNP	MFSD6L	ENST00000329805	human	ensembl	74_37	-1	known	silent	c.1146	p.V382	0.953	superfamily_MFS_dom_general_subst_transpt	superfamily_MFS_dom_general_subst_transpt	-	no_errors	MFSD6L	HGNC	ENSG00000185156				94	0	0	74	10	11.9048
MC5R	0	genome.wustl.edu	37	18	13826438	13826438	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	18	13826438	13826438	C	T	SNP	MC5R	ENST00000324750	human	ensembl	74_37	+1	known	missense	c.674	p.A225V	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Melancort_rcpt_5	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Melancort_rcpt_5,prints_Melcrt_ACTH_rcpt,prints_GPCR_Rhodpsn,prints_Melancort_rcpt	-	no_errors	MC5R	HGNC	ENSG00000176136				310	0	0	247	19	7.14286
ANKRD30B	0	genome.wustl.edu	37	18	14848896	14848896	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	18	14848896	14848896	A	C	SNP	ANKRD30B	ENST00000358984	human	ensembl	74_37	+1	known	missense	c.3006	p.K1002N	0.995	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD30B	HGNC	ENSG00000180777				42	0	0	25	2	7.40741
ZNF521	0	genome.wustl.edu	37	18	22805350	22805350	+	Silent	SNP	T	T	G			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	18	22805350	22805350	T	G	SNP	ZNF521	ENST00000361524	human	ensembl	74_37	-1	known	silent	c.2532	p.T844	0.265	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF521	HGNC	ENSG00000198795				206	0	0	163	10	5.78035
PIK3C3	0	genome.wustl.edu	37	18	39618752	39618752	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	18	39618752	39618752	G	A	SNP	PIK3C3	ENST00000262039	human	ensembl	74_37	+1	known	missense	c.1976	p.R659Q	1.000	pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pirsf_PI3K_Vps34,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_C2_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pirsf_PI3K_Vps34,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3C3	HGNC	ENSG00000078142				78	0	0	58	6	9.375
COMP	0	genome.wustl.edu	37	19	18898331	18898331	+	Silent	SNP	G	G	A			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	19	18898331	18898331	G	A	SNP	COMP	ENST00000222271	human	ensembl	74_37	-1	known	silent	c.1104	p.G368	0.845	pfam_Thrombospondin_3-like_rpt	pfam_Thrombospondin_C,pfam_EGF-like_Ca-bd_dom,pfam_Thbs/COMP_coiled-coil,pfam_Thrombospondin_3-like_rpt,superfamily_ConA-like_lec_gl_sf,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	COMP	HGNC	ENSG00000105664				209	0	0	153	10	6.13497
TSHZ3	0	genome.wustl.edu	37	19	31767522	31767522	+	Silent	SNP	G	G	A			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	19	31767522	31767522	G	A	SNP	TSHZ3	ENST00000240587	human	ensembl	74_37	-1	known	silent	c.3177	p.H1059	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	TSHZ3	HGNC	ENSG00000121297				110	0	0	91	8	8.08081
ZNF540	0	genome.wustl.edu	37	19	38103644	38103644	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	19	38103644	38103644	T	G	SNP	ZNF540	ENST00000316433	human	ensembl	74_37	+1	known	missense	c.1463	p.I488S	0.994	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF540	HGNC	ENSG00000171817				106	0	0	91	10	9.90099
ANKRD24	0	genome.wustl.edu	37	19	4219595	4219595	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	19	4219595	4219595	G	A	SNP	ANKRD24	ENST00000318934	human	ensembl	74_37	+1	known	missense	c.3011	p.R1004H	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD24	HGNC	ENSG00000089847				118	0	0	98	7	6.66667
ZNF543	0	genome.wustl.edu	37	19	57839487	57839487	+	Silent	SNP	G	G	C			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	19	57839487	57839487	G	C	SNP	ZNF543	ENST00000321545	human	ensembl	74_37	+1	known	silent	c.657	p.R219	0.694	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF543	HGNC	ENSG00000178229				90	0	0	77	5	6.09756
ZNF256	0	genome.wustl.edu	37	19	58452476	58452476	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	19	58452476	58452476	C	G	SNP	ZNF256	ENST00000282308	human	ensembl	74_37	-1	known	missense	c.1700	p.R567T	0.084	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF256	HGNC	ENSG00000152454				98	0	0	73	7	8.75
SLC27A5	0	genome.wustl.edu	37	19	59010878	59010878	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	19	59010878	59010878	G	A	SNP	SLC27A5	ENST00000263093	human	ensembl	74_37	-1	known	missense	c.1648	p.R550C	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	SLC27A5	HGNC	ENSG00000083807				93	0	0	85	5	5.55556
MUC16	0	genome.wustl.edu	37	19	9056390	9056390	+	Silent	SNP	A	A	T			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	19	9056390	9056390	A	T	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	silent	c.31056	p.T10352	0.093	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				110	0	0	98	7	6.66667
GPD2	0	genome.wustl.edu	37	2	157407168	157407168	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	2	157407168	157407168	C	T	SNP	GPD2	ENST00000310454	human	ensembl	74_37	+1	known	missense	c.881	p.T294M	1.000	pfam_FAD-dep_OxRdtase	pfam_FAD-dep_OxRdtase,pfam_FAD_bind_dom,smart_EF_hand_dom,pfscan_EF_hand_dom,prints_G3P_DH_FAD-dep	-	no_errors	GPD2	HGNC	ENSG00000115159				71	0	0	74	11	12.9412
TTN	0	genome.wustl.edu	37	2	179610671	179610671	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	2	179610671	179610671	T	C	SNP	TTN	ENST00000360870	human	ensembl	74_37	-1	known	missense	c.16456	p.T5486A	1.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Titin_Z,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				119	0	0	91	8	8.08081
APOB	0	genome.wustl.edu	37	2	21265256	21265256	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	2	21265256	21265256	T	G	SNP	APOB	ENST00000233242	human	ensembl	74_37	-1	known	missense	c.214	p.S72R	0.961	pfam_Lipid_transpt_N,superfamily_Lipid_transp_b-sht_shell,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674				168	0	0	134	19	12.4183
ERBB4	0	genome.wustl.edu	37	2	213403244	213403244	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	2	213403244	213403244	G	T	SNP	ERBB4	ENST00000342788	human	ensembl	74_37	-1	known	missense	c.11	p.A4E	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	ERBB4	HGNC	ENSG00000178568				122	1	0.813008	121	9	6.92308
PREPL	0	genome.wustl.edu	37	2	44566387	44566387	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	2	44566387	44566387	C	T	SNP	PREPL	ENST00000260648	human	ensembl	74_37	-1	known	missense	c.868	p.V290I	0.815	pfam_Pept_S9A_N	pfam_Peptidase_S9,pfam_Pept_S9A_N,prints_Peptidase_S9A	-	no_errors	PREPL	HGNC	ENSG00000138078				67	0	0	47	5	9.61538
TSPYL6	0	genome.wustl.edu	37	2	54482198	54482198	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	2	54482198	54482198	C	G	SNP	TSPYL6	ENST00000317802	human	ensembl	74_37	-1	known	missense	c.1091	p.R364T	0.925	pfam_NAP_family	pfam_NAP_family	-	no_errors	TSPYL6	HGNC	ENSG00000178021				97	0	0	71	6	7.79221
RAB11FIP5	0	genome.wustl.edu	37	2	73316188	73316188	+	Silent	SNP	G	G	C			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	2	73316188	73316188	G	C	SNP	RAB11FIP5	ENST00000258098	human	ensembl	74_37	-1	known	silent	c.687	p.G229	1.000	NULL	pfam_Rab-bd_FIP-RBD,pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	RAB11FIP5	HGNC	ENSG00000135631				148	1	0.671141	129	9	6.52174
ALMS1	0	genome.wustl.edu	37	2	73717086	73717086	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	2	73717086	73717086	G	A	SNP	ALMS1	ENST00000264448	human	ensembl	74_37	+1	known	missense	c.7997	p.G2666D	0.175	NULL	NULL	-	no_errors	ALMS1	HGNC	ENSG00000116127				153	0	0	109	16	12.8
ACSS1	0	genome.wustl.edu	37	20	25004206	25004206	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	20	25004206	25004206	C	T	SNP	ACSS1	ENST00000323482	human	ensembl	74_37	-1	known	missense	c.703	p.V235M	1.000	pfam_AMP-dep_Synth/Lig,tigrfam_Ac_CoA_lig	pfam_AMP-dep_Synth/Lig,tigrfam_Ac_CoA_lig	-	no_errors	ACSS1	HGNC	ENSG00000154930				59	0	0	37	5	11.9048
BPIFB1	0	genome.wustl.edu	37	20	31878782	31878782	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	20	31878782	31878782	G	A	SNP	BPIFB1	ENST00000253354	human	ensembl	74_37	+1	known	missense	c.385	p.V129M	0.229	pfam_Lipid-bd_serum_glycop_N,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_N,pirsf_PLUNC_long_form	pfam_Lipid-bd_serum_glycop_N,pfam_Lipid-bd_serum_glycop_C,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_N,pirsf_PLUNC_long_form	-	no_errors	BPIFB1	HGNC	ENSG00000125999				49	0	0	30	3	9.09091
RASSF2	0	genome.wustl.edu	37	20	4771182	4771182	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	20	4771182	4771182	C	T	SNP	RASSF2	ENST00000379376	human	ensembl	74_37	-1	known	missense	c.452	p.R151H	1.000	NULL	pfam_Ras-assoc,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_SARAH_dom	-	no_errors	RASSF2	HGNC	ENSG00000101265				48	0	0	41	6	12.766
KRTAP13-3	0	genome.wustl.edu	37	21	31797958	31797958	+	Silent	SNP	A	A	G			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	21	31797958	31797958	A	G	SNP	KRTAP13-3	ENST00000390690	human	ensembl	74_37	-1	known	silent	c.273	p.S91	0.002	pfam_KRTAP_PMG	pfam_KRTAP_PMG	-	no_errors	KRTAP13-3	HGNC	ENSG00000240432				46	0	0	58	8	12.1212
ETS2	0	genome.wustl.edu	37	21	40186841	40186841	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	21	40186841	40186841	T	A	SNP	ETS2	ENST00000360214	human	ensembl	74_37	+1	known	missense	c.441	p.F147L	0.999	pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,pirsf_Transform_prot_C-ets	pfam_Ets_dom,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets_dom,pirsf_Transform_prot_C-ets,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	ETS2	HGNC	ENSG00000157557				271	0	0	207	29	12.2881
POTEH	0	genome.wustl.edu	37	22	16269934	16269934	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	22	16269934	16269934	A	G	SNP	POTEH	ENST00000343518	human	ensembl	74_37	-1	known	missense	c.1247	p.L416S	0.023	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	POTEH	HGNC	ENSG00000198062				21	0	0	13	4	23.5294
GAB4	0	genome.wustl.edu	37	22	17472913	17472913	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	22	17472913	17472913	A	C	SNP	GAB4	ENST00000400588	human	ensembl	74_37	-1	known	missense	c.328	p.F110V	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	GAB4	HGNC	ENSG00000215568				341	0	0	300	35	10.4478
PLA2G3	0	genome.wustl.edu	37	22	31533854	31533854	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	22	31533854	31533854	C	T	SNP	PLA2G3	ENST00000215885	human	ensembl	74_37	-1	known	missense	c.908	p.R303Q	0.000	NULL	pfam_PLipase_A2,superfamily_PLipase_A2_dom	-	no_errors	PLA2G3	HGNC	ENSG00000100078				235	0	0	198	12	5.71429
TRIOBP	0	genome.wustl.edu	37	22	38120424	38120424	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	22	38120424	38120424	C	T	SNP	TRIOBP	ENST00000406386	human	ensembl	74_37	+1	known	nonsense	c.1861	p.R621*	0.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	TRIOBP	HGNC	ENSG00000100106				153	1	0.649351	121	9	6.92308
TMPRSS7	0	genome.wustl.edu	37	3	111799889	111799889	+	Silent	SNP	C	C	T			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	3	111799889	111799889	C	T	SNP	TMPRSS7	ENST00000419127	human	ensembl	74_37	+1	known	silent	c.2112	p.N704	0.998	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,pfam_SEA_dom,pfam_LDrepeatLR_classA_rpt,pfam_CUB_dom,superfamily_Trypsin-like_Pept_dom,superfamily_CUB_dom,superfamily_LDrepeatLR_classA_rpt,smart_CUB_dom,smart_LDrepeatLR_classA_rpt,smart_Peptidase_S1,pfscan_CUB_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_Peptidase_S1,prints_Peptidase_S1A,prints_LDrepeatLR_classA_rpt	-	no_errors	TMPRSS7	HGNC	ENSG00000176040				112	1	0.884956	86	6	6.52174
EPHB1	0	genome.wustl.edu	37	3	134920329	134920329	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	3	134920329	134920329	A	T	SNP	EPHB1	ENST00000398015	human	ensembl	74_37	+1	known	missense	c.2144	p.Q715L	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHB1	HGNC	ENSG00000154928				263	0	0	216	13	5.67686
PLSCR5	0	genome.wustl.edu	37	3	146311762	146311762	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	3	146311762	146311762	G	C	SNP	PLSCR5	ENST00000443512	human	ensembl	74_37	-1	known	missense	c.398	p.T133R	0.012	pfam_Scramblase,superfamily_Tubby_C-like	pfam_Scramblase,superfamily_Tubby_C-like	-	no_errors	PLSCR5	HGNC	ENSG00000231213				142	0	0	97	6	5.82524
NMD3	0	genome.wustl.edu	37	3	160945104	160945104	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	3	160945104	160945104	G	C	SNP	NMD3	ENST00000351193	human	ensembl	74_37	+1	known	missense	c.249	p.L83F	1.000	pfam_NMD3	pfam_NMD3	-	no_errors	NMD3	HGNC	ENSG00000169251				82	0	0	62	8	11.4286
RFTN1	0	genome.wustl.edu	37	3	16419336	16419336	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	3	16419336	16419336	A	G	SNP	RFTN1	ENST00000334133	human	ensembl	74_37	-1	known	missense	c.715	p.S239P	0.002	NULL	NULL	-	no_errors	RFTN1	HGNC	ENSG00000131378				67	0	0	45	7	13.4615
WDR49	0	genome.wustl.edu	37	3	167254760	167254760	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	3	167254760	167254760	A	G	SNP	WDR49	ENST00000308378	human	ensembl	74_37	-1	known	missense	c.796	p.F266L	1.000	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR49	HGNC	ENSG00000174776				66	0	0	57	10	14.9254
LPP	0	genome.wustl.edu	37	3	188327328	188327328	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	3	188327328	188327328	G	C	SNP	LPP	ENST00000312675	human	ensembl	74_37	+1	known	missense	c.809	p.G270A	0.993	NULL	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	LPP	HGNC	ENSG00000145012				84	0	0	91	6	6.18557
ATP13A5	0	genome.wustl.edu	37	3	193007764	193007764	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	3	193007764	193007764	A	T	SNP	ATP13A5	ENST00000342358	human	ensembl	74_37	-1	known	missense	c.2933	p.F978Y	0.017	tigrfam_ATPase_P-typ_Cation_typ_V	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_Cation_typ_V,pfam_ATPase_P-typ_cation-transptr_N,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Cation_typ_V,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP13A5	HGNC	ENSG00000187527				47	0	0	43	6	12.2449
MUC4	0	genome.wustl.edu	37	3	195505836	195505836	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	3	195505836	195505836	G	C	SNP	MUC4	ENST00000463781	human	ensembl	74_37	-1	known	missense	c.12615	p.H4205Q	0.981	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EG-like_dom,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113				9	0	0	13	3	18.75
SCN5A	0	genome.wustl.edu	37	3	38591857	38591857	+	Silent	SNP	G	G	A			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	3	38591857	38591857	G	A	SNP	SCN5A	ENST00000333535	human	ensembl	74_37	-1	known	silent	c.6006	p.A2002	0.000	NULL	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,prints_Na_channel_a5su,prints_Na_channel_asu	-	no_errors	SCN5A	HGNC	ENSG00000183873				144	0	0	126	8	5.97015
LRIG1	0	genome.wustl.edu	37	3	66430710	66430710	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	3	66430710	66430710	G	C	SNP	LRIG1	ENST00000273261	human	ensembl	74_37	-1	known	missense	c.3259	p.L1087V	0.000	NULL	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Cys-rich_flank_reg_C,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LRIG1	HGNC	ENSG00000144749				96	0	0	75	8	9.63855
IL17RE	0	genome.wustl.edu	37	3	9952952	9952952	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	3	9952952	9952952	A	G	SNP	IL17RE	ENST00000421412	human	ensembl	74_37	+1	known	missense	c.1139	p.N380S	0.998	NULL	pfam_SEFIR	-	no_errors	IL17RE	HGNC	ENSG00000163701				187	0	0	186	10	5.10204
ZNF518B	0	genome.wustl.edu	37	4	10445492	10445492	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	4	10445492	10445492	A	C	SNP	ZNF518B	ENST00000326756	human	ensembl	74_37	-1	known	missense	c.2461	p.S821A	0.001	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF518B	HGNC	ENSG00000178163				175	0	0	109	7	6.03448
SEC24B-AS1	0	genome.wustl.edu	37	4	110268661	110268661	+	RNA	SNP	C	C	A			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	4	110268661	110268661	C	A	SNP	SEC24B-AS1	ENST00000499713	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.036	-	-	-	no_errors	SEC24B-AS1	HGNC	ENSG00000247950				26	0	0	29	4	12.1212
CWH43	0	genome.wustl.edu	37	4	49005981	49005981	+	Silent	SNP	C	C	T			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	4	49005981	49005981	C	T	SNP	CWH43	ENST00000226432	human	ensembl	74_37	+1	known	silent	c.1032	p.Y344	0.904	NULL	superfamily_Endo/exonuclease/phosphatase	-	no_errors	CWH43	HGNC	ENSG00000109182				38	0	0	30	5	14.2857
LPHN3	0	genome.wustl.edu	37	4	62903555	62903555	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	4	62903555	62903555	G	A	SNP	LPHN3	ENST00000507625	human	ensembl	74_37	+1	known	missense	c.3671	p.R1224H	1.000	pfam_GPCR_2_latrophilin_rcpt_C	pfam_GPCR_2_latrophilin_rcpt_C,pfam_Olfac-like,pfam_DUF3497,pfam_GPCR_2_secretin-like,pfam_Lectin_gal-bd_dom,pfam_GPS_dom,pfam_GPCR_2_extracellular_dom,smart_Olfac-like,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_Lectin_gal-bd_dom,pfscan_Olfac-like,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_latrophilin,prints_GPCR_2_secretin-like	-	no_errors	LPHN3	HGNC	ENSG00000150471				99	0	0	69	7	9.21053
CYFIP2	0	genome.wustl.edu	37	5	156810315	156810315	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	5	156810315	156810315	A	C	SNP	CYFIP2	ENST00000318218	human	ensembl	74_37	+1	known	missense	c.3230	p.K1077T	1.000	pfam_Cytoplasmic_FMR1-int,pirsf_Cytoplasmic_FMR1-int_sub	pfam_Cytoplasmic_FMR1-int,pirsf_Cytoplasmic_FMR1-int_sub,prints_Cytoplasmic_FMR1-int	-	no_errors	CYFIP2	HGNC	ENSG00000055163				40	0	0	54	3	5.26316
FBXL7	0	genome.wustl.edu	37	5	15928114	15928114	+	Silent	SNP	C	C	T			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	5	15928114	15928114	C	T	SNP	FBXL7	ENST00000504595	human	ensembl	74_37	+1	known	silent	c.243	p.T81	0.044	NULL	pfam_Leu-rich_rpt,pfam_F-box_dom,superfamily_F-box_dom,smart_F-box_dom,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_F-box_dom	-	no_errors	FBXL7	HGNC	ENSG00000183580				64	0	0	45	4	8.16327
MGAT4B	0	genome.wustl.edu	37	5	179225392	179225392	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	5	179225392	179225392	C	T	SNP	MGAT4B	ENST00000337755	human	ensembl	74_37	-1	known	missense	c.1510	p.A504T	0.007	NULL	pfam_Glyco_transf_54	-	no_errors	MGAT4B	HGNC	ENSG00000161013				33	0	0	42	4	8.69565
SLC45A2	0	genome.wustl.edu	37	5	33951726	33951726	+	Silent	SNP	G	G	A			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	5	33951726	33951726	G	A	SNP	SLC45A2	ENST00000296589	human	ensembl	74_37	-1	known	silent	c.1089	p.Y363	0.978	superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC45A2	HGNC	ENSG00000164175				174	0	0	143	12	7.74194
IRX1	0	genome.wustl.edu	37	5	3599410	3599410	+	Silent	SNP	T	T	C			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	5	3599410	3599410	T	C	SNP	IRX1	ENST00000302006	human	ensembl	74_37	+1	known	silent	c.348	p.A116	1.000	superfamily_Homeodomain-like	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,smart_Iroquois_homeo,pfscan_Homeobox_dom	-	no_errors	IRX1	HGNC	ENSG00000170549				73	0	0	62	4	6.06061
NADK2	0	genome.wustl.edu	37	5	36226645	36226645	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	5	36226645	36226645	C	T	SNP	NADK2	ENST00000381937	human	ensembl	74_37	-1	putative	missense	c.410	p.R137H	1.000	pfam_PolyP/ATP_NADK_prd,superfamily_ATP-NAD_kinase_PpnK-typ,pirsf_ATP-NAD-like_euk	pfam_PolyP/ATP_NADK_prd,superfamily_ATP-NAD_kinase_PpnK-typ,pirsf_ATP-NAD-like_euk	-	no_errors	NADK2	HGNC	ENSG00000152620				132	0	0	84	5	5.61798
ELOVL7	0	genome.wustl.edu	37	5	60050537	60050537	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	5	60050537	60050537	G	T	SNP	ELOVL7	ENST00000425382	human	ensembl	74_37	-1	known	missense	c.760	p.L254I	1.000	pfam_GNS1_SUR4	pfam_GNS1_SUR4	-	no_errors	ELOVL7	HGNC	ENSG00000164181				70	0	0	42	4	8.69565
MAST4	0	genome.wustl.edu	37	5	66459277	66459277	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	5	66459277	66459277	G	A	SNP	MAST4	ENST00000404260	human	ensembl	74_37	+1	known	missense	c.4279	p.V1427I	1.000	NULL	pfam_MA_Ser/Thr_Kinase_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,superfamily_Kinase-like_dom,superfamily_MAST_pre-PK_dom,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PDZ,pfscan_PDZ,pfscan_Prot_kinase_dom	-	no_errors	MAST4	HGNC	ENSG00000069020				41	0	0	34	5	12.8205
CMYA5	0	genome.wustl.edu	37	5	79034738	79034738	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	5	79034738	79034738	T	A	SNP	CMYA5	ENST00000446378	human	ensembl	74_37	+1	known	missense	c.10150	p.F3384I	0.097	NULL	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	-	no_errors	CMYA5	HGNC	ENSG00000164309				89	0	0	78	11	12.3596
ROS1	0	genome.wustl.edu	37	6	117642553	117642553	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	6	117642553	117642553	C	T	SNP	ROS1	ENST00000368508	human	ensembl	74_37	-1	known	nonsense	c.5646	p.W1882*	0.994	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_LDLR_classB_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	ROS1	HGNC	ENSG00000047936				190	0	0	175	11	5.91398
HIST1H2AE	0	genome.wustl.edu	37	6	26217233	26217233	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	6	26217233	26217233	G	A	SNP	HIST1H2AE	ENST00000303910	human	ensembl	74_37	+1	known	missense	c.31	p.A11T	0.997	superfamily_Histone-fold,smart_Histone_H2A	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	-	no_errors	HIST1H2AE	HGNC	ENSG00000168274				73	0	0	56	8	12.5
GFRAL	0	genome.wustl.edu	37	6	55223692	55223692	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	6	55223692	55223692	C	G	SNP	GFRAL	ENST00000340465	human	ensembl	74_37	+1	known	missense	c.708	p.H236Q	0.007	pfam_GDNF/GAS1,smart_GDNF/GAS1	pfam_GDNF/GAS1,smart_GDNF/GAS1	-	no_errors	GFRAL	HGNC	ENSG00000187871				83	0	0	56	6	9.67742
GRM8	0	genome.wustl.edu	37	7	126173574	126173574	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	7	126173574	126173574	A	G	SNP	GRM8	ENST00000339582	human	ensembl	74_37	-1	known	missense	c.1862	p.L621P	1.000	pfam_GPCR_3_C,prints_GPCR_3,pfscan_GPCR_3_C	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_8,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_4,pfscan_GPCR_3_C	-	no_errors	GRM8	HGNC	ENSG00000179603				93	0	0	55	9	14.0625
CNTNAP2	0	genome.wustl.edu	37	7	146997238	146997238	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	7	146997238	146997238	G	A	SNP	CNTNAP2	ENST00000361727	human	ensembl	74_37	+1	known	missense	c.1354	p.G452R	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,pfam_EG-like_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EG-like_dom,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP2	HGNC	ENSG00000174469				73	0	0	72	12	14.2857
UBE3C	0	genome.wustl.edu	37	7	157046671	157046671	+	Silent	SNP	G	G	A			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	7	157046671	157046671	G	A	SNP	UBE3C	ENST00000348165	human	ensembl	74_37	+1	known	silent	c.2718	p.G906	0.010	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,superfamily_HECT,superfamily_DHFR-like_dom,smart_IQ_motif_EF-hand-BS,smart_HECT,pfscan_HECT,pfscan_IQ_motif_EF-hand-BS	-	no_errors	UBE3C	HGNC	ENSG00000009335				50	0	0	32	7	17.9487
DNAH11	0	genome.wustl.edu	37	7	21847621	21847621	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	7	21847621	21847621	G	T	SNP	DNAH11	ENST00000328843	human	ensembl	74_37	+1	known	missense	c.10307	p.R3436L	1.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH11	HGNC	ENSG00000105877				17	0	0	13	5	27.7778
GTF2IRD1	0	genome.wustl.edu	37	7	74005258	74005258	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	7	74005258	74005258	C	T	SNP	GTF2IRD1	ENST00000265755	human	ensembl	74_37	+1	known	missense	c.2548	p.R850W	1.000	pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I	pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I	-	no_errors	GTF2IRD1	HGNC	ENSG00000006704				107	1	0.925926	59	13	18.0556
CLDN12	0	genome.wustl.edu	37	7	90042682	90042682	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	7	90042682	90042682	C	T	SNP	CLDN12	ENST00000287916	human	ensembl	74_37	+1	known	missense	c.692	p.S231F	1.000	NULL	prints_Claudin12	-	no_errors	CLDN12	HGNC	ENSG00000157224				183	0	0	143	28	16.3743
ADCY8	0	genome.wustl.edu	37	8	131916210	131916210	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	8	131916210	131916210	C	A	SNP	ADCY8	ENST00000286355	human	ensembl	74_37	-1	known	missense	c.1719	p.R573S	0.996	pfam_A/G_cyclase,superfamily_A/G_cyclase	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY8	HGNC	ENSG00000155897				298	0	0	211	15	6.63717
POLE3	0	genome.wustl.edu	37	9	116172571	116172571	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	9	116172571	116172571	C	A	SNP	POLE3	ENST00000374169	human	ensembl	74_37	-1	known	missense	c.3	p.M1I	1.000	NULL	pfam_CBFA_NFYB_domain,superfamily_Histone-fold	-	no_errors	POLE3	HGNC	ENSG00000148229				34	0	0	29	2	6.45161
PAPPA	0	genome.wustl.edu	37	9	119114988	119114988	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	9	119114988	119114988	A	G	SNP	PAPPA	ENST00000328252	human	ensembl	74_37	+1	known	missense	c.3968	p.N1323S	1.000	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,pfam_Notch_dom,pfam_Peptidase_M43,superfamily_ConA-like_lec_gl_sf,superfamily_Sushi_SCR_CCP,superfamily_Fibronectin_type3,superfamily_Notch_dom,smart_LamG-like,smart_Notch_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,tigrfam_Myxo_disulph_rpt	-	no_errors	PAPPA	HGNC	ENSG00000182752				92	0	0	66	6	8.33333
PAPPA	0	genome.wustl.edu	37	9	119115107	119115107	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	9	119115107	119115107	C	T	SNP	PAPPA	ENST00000328252	human	ensembl	74_37	+1	known	nonsense	c.4087	p.R1363*	0.988	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,pfam_Notch_dom,pfam_Peptidase_M43,superfamily_ConA-like_lec_gl_sf,superfamily_Sushi_SCR_CCP,superfamily_Fibronectin_type3,superfamily_Notch_dom,smart_LamG-like,smart_Notch_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,tigrfam_Myxo_disulph_rpt	-	no_errors	PAPPA	HGNC	ENSG00000182752				91	0	0	70	5	6.66667
GAPVD1	0	genome.wustl.edu	37	9	128074745	128074745	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	9	128074745	128074745	A	C	SNP	GAPVD1	ENST00000394105	human	ensembl	74_37	+1	known	missense	c.1456	p.S486R	1.000	NULL	pfam_RasGAP,pfam_VPS9,superfamily_Rho_GTPase_activation_prot,smart_VPS9_subgr,pfscan_VPS9,pfscan_RasGAP	-	no_errors	GAPVD1	HGNC	ENSG00000165219				38	0	0	25	4	13.7931
VAV2	0	genome.wustl.edu	37	9	136648670	136648670	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	9	136648670	136648670	C	T	SNP	VAV2	ENST00000371850	human	ensembl	74_37	-1	known	missense	c.1678	p.G560R	1.000	pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_Kinase_C-like_PE/DAG-bd	pfam_DH-domain,pfam_SH3_2,pfam_CAMSAP_CH,pfam_SH3_domain,pfam_SH2,pfam_CH-domain,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_CH-domain,superfamily_SH3_domain,smart_CH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_SH3_domain,smart_SH2,pfscan_CH-domain,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain,prints_SH2,prints_SH3_domain	-	no_errors	VAV2	HGNC	ENSG00000160293				60	0	0	50	3	5.66038
PSIP1	0	genome.wustl.edu	37	9	15468792	15468792	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	9	15468792	15468792	A	C	SNP	PSIP1	ENST00000380733	human	ensembl	74_37	-1	known	missense	c.1256	p.L419W	1.000	pfam_LEDGF	pfam_LEDGF,pfam_PWWP_dom,smart_PWWP_dom,pfscan_PWWP_dom,prints_Treacle-like_TCS	-	no_errors	PSIP1	HGNC	ENSG00000164985				97	0	0	50	8	13.7931
TAF1L	0	genome.wustl.edu	37	9	32632187	32632187	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	9	32632187	32632187	T	C	SNP	TAF1L	ENST00000242310	human	ensembl	74_37	-1	known	missense	c.3391	p.K1131E	1.000	pirsf_TAF1_animal	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	TAF1L	HGNC	ENSG00000122728				121	0	0	100	8	7.40741
SPATA31D1	0	genome.wustl.edu	37	9	84603746	84603746	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	9	84603746	84603746	C	G	SNP	SPATA31D1	ENST00000344803	human	ensembl	74_37	+1	known	missense	c.13	p.L5V	0.000	NULL	NULL	-	no_errors	SPATA31D1	HGNC	ENSG00000214929				96	0	0	81	10	10.989
C9orf3	0	genome.wustl.edu	37	9	97535462	97535462	+	RNA	SNP	G	G	C			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	9	97535462	97535462	G	C	SNP	C9orf3	ENST00000489318	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	C9orf3	HGNC	ENSG00000148120				129	0	0	117	13	10
MID1	0	genome.wustl.edu	37	X	10450560	10450560	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	X	10450560	10450560	G	A	SNP	MID1	ENST00000317552	human	ensembl	74_37	-1	known	missense	c.973	p.H325Y	1.000	smart_Bbox_C	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Fibronectin_type3,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	MID1	HGNC	ENSG00000101871				223	0	0	162	9	5.26316
KLHL13	0	genome.wustl.edu	37	X	117033040	117033040	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	X	117033040	117033040	C	T	SNP	KLHL13	ENST00000539496	human	ensembl	74_37	-1	known	missense	c.1808	p.R603H	1.000	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL13	HGNC	ENSG00000003096				192	0	0	167	18	9.72973
NAP1L3	0	genome.wustl.edu	37	X	92928030	92928030	+	Silent	SNP	A	A	G			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	X	92928030	92928030	A	G	SNP	NAP1L3	ENST00000373079	human	ensembl	74_37	-1	known	silent	c.274	p.L92	0.000	NULL	pfam_NAP_family	-	no_errors	NAP1L3	HGNC	ENSG00000186310				42	0	0	36	6	14.2857
ANKMY2	0	genome.wustl.edu	37	7	16676082	16676083	+	Splice_Site	INS	-	-	A			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	7	16676082	16676083	-	A	INS	ANKMY2	ENST00000306999	human	ensembl	74_37	-1	known	splice_site_ins	c.68-3_68-2	e2-2	0.833:0.000	-	-	-	no_errors	ANKMY2	HGNC	ENSG00000106524				12	0	0	15	4	21.0526
CNTRL	0	genome.wustl.edu	37	9	123875984	123875985	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6705-01A-12D-1882-08	TCGA-BR-6705-10A-01D-1882-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	02c5e07a-0986-4860-b192-0cf8d4fce7ce	ba6c6e1c-d481-4e30-a777-a943c3566d4b	9	123875984	123875985	-	A	INS	CNTRL	ENST00000238341	human	ensembl	74_37	+1	known	frame_shift_ins	c.1327_1328	p.I446fs	0.994:0.553	NULL	pfam_Leu-rich_rpt,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	CNTRL	HGNC	ENSG00000119397				51	0	0	35	2	5.40541
