Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
NGF	0	genome.wustl.edu	37	1	115828920	115828920	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	1	115828920	115828920	T	G	SNP	NGF	ENST00000369512	human	ensembl	74_37	-1	known	missense	c.497	p.N166T	1.000	pirsf_Nerve_growth_factor-like,pfam_Nerve_growth_factor-rel,smart_Nerve_growth_factor-rel,prints_Nerve_growth_factor_bsu,pfscan_Nerve_growth_factor-rel	pirsf_Nerve_growth_factor-like,pfam_Nerve_growth_factor-rel,smart_Nerve_growth_factor-rel,prints_Nerve_growth_factor-rel,prints_Nerve_growth_factor_bsu_mml,prints_Nerve_growth_factor_bsu,pfscan_Nerve_growth_factor-rel	-	no_errors	NGF	HGNC	ENSG00000134259				190	0	0	147	19	11.4458
PRAMEF1	0	genome.wustl.edu	37	1	12855688	12855688	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	1	12855688	12855688	A	C	SNP	PRAMEF1	ENST00000332296	human	ensembl	74_37	+1	known	missense	c.968	p.K323T	0.000	NULL	NULL	-	no_errors	PRAMEF1	HGNC	ENSG00000116721				231	0	0	267	33	11
POGZ	0	genome.wustl.edu	37	1	151384863	151384863	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	1	151384863	151384863	T	G	SNP	POGZ	ENST00000271715	human	ensembl	74_37	-1	known	missense	c.1688	p.K563T	1.000	smart_Znf_C2H2-like	pfam_DDE_SF_endonuclease_CENPB-like,pfam_HTH_CenpB_DNA-bd_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_HTH_CenpB_DNA-bd_dom,pfscan_Znf_C2H2	-	no_errors	POGZ	HGNC	ENSG00000143442				99	0	0	103	15	12.7119
TCHH	0	genome.wustl.edu	37	1	152080591	152080591	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	1	152080591	152080591	C	T	SNP	TCHH	ENST00000368804	human	ensembl	74_37	-1	known	missense	c.5102	p.R1701H	0.005	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom	-	no_errors	TCHH	HGNC	ENSG00000159450				209	0	0	202	22	9.82143
SH2D2A	0	genome.wustl.edu	37	1	156779580	156779580	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	1	156779580	156779580	A	G	SNP	SH2D2A	ENST00000392306	human	ensembl	74_37	-1	known	missense	c.617	p.L206P	0.707	NULL	pfam_SH2,smart_SH2,pfscan_SH2	-	no_errors	SH2D2A	HGNC	ENSG00000027869				238	0	0	187	25	11.7925
FCRL3	0	genome.wustl.edu	37	1	157668201	157668201	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	1	157668201	157668201	C	T	SNP	FCRL3	ENST00000492769	human	ensembl	74_37	-1	known	missense	c.271	p.D91N	0.999	smart_Ig_sub,pfscan_Ig-like_dom	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	FCRL3	HGNC	ENSG00000160856				149	0	0	120	13	9.77444
GPATCH2	0	genome.wustl.edu	37	1	217793304	217793304	+	Silent	SNP	G	G	A			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	1	217793304	217793304	G	A	SNP	GPATCH2	ENST00000366935	human	ensembl	74_37	-1	known	silent	c.594	p.A198	0.001	NULL	pfam_G_patch_dom,smart_G_patch_dom,pfscan_G_patch_dom	-	no_errors	GPATCH2	HGNC	ENSG00000092978				211	0	0	187	17	8.33333
ZP4	0	genome.wustl.edu	37	1	238049070	238049070	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	1	238049070	238049070	A	C	SNP	ZP4	ENST00000366570	human	ensembl	74_37	-1	known	missense	c.956	p.L319R	0.970	pfam_ZP_dom,smart_ZP_dom,pfscan_ZP_dom	pfam_ZP_dom,pfam_P_trefoil,superfamily_P_trefoil,smart_P_trefoil,smart_ZP_dom,pfscan_ZP_dom,prints_ZP_dom	-	no_errors	ZP4	HGNC	ENSG00000116996				92	0	0	65	6	8.4507
OR2L8	0	genome.wustl.edu	37	1	248113081	248113081	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	1	248113081	248113081	T	C	SNP	OR2L8	ENST00000357191	human	ensembl	74_37	+1	known	missense	c.922	p.C308R	0.330	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2L8	HGNC	ENSG00000196936				79	0	0	66	9	12
MEGF6	0	genome.wustl.edu	37	1	3427384	3427384	+	Silent	SNP	G	G	A			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	1	3427384	3427384	G	A	SNP	MEGF6	ENST00000356575	human	ensembl	74_37	-1	known	silent	c.1197	p.A399	0.404	smart_EGF-like_Ca-bd_dom,smart_EG-like_dom	pfam_EGF_laminin,pfam_EGF-like_Ca-bd_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_EGF_laminin,pfscan_EG-like_dom,pfscan_EMI_domain	-	no_errors	MEGF6	HGNC	ENSG00000162591				73	0	0	58	5	7.93651
DLGAP3	0	genome.wustl.edu	37	1	35369893	35369893	+	Silent	SNP	A	A	G			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	1	35369893	35369893	A	G	SNP	DLGAP3	ENST00000235180	human	ensembl	74_37	-1	known	silent	c.1092	p.T364	1.000	NULL	pfam_GKAP	-	no_errors	DLGAP3	HGNC	ENSG00000116544				115	0	0	104	17	14.0496
MRPS15	0	genome.wustl.edu	37	1	36926911	36926911	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	1	36926911	36926911	A	G	SNP	MRPS15	ENST00000373116	human	ensembl	74_37	-1	known	missense	c.254	p.V85A	1.000	NULL	pfam_Ribosomal_S15,superfamily_S15_NS1_RNA-bd	-	no_errors	MRPS15	HGNC	ENSG00000116898				61	0	0	56	6	9.67742
ZFP69B	0	genome.wustl.edu	37	1	40929053	40929053	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	1	40929053	40929053	A	G	SNP	ZFP69B	ENST00000411995	human	ensembl	74_37	+1	known	missense	c.1397	p.Q466R	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,pfam_Tscrpt_reg_SCAN,superfamily_Krueppel-associated_box,superfamily_Retrov_capsid_C,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZFP69B	HGNC	ENSG00000187801				73	0	0	48	5	9.43396
PGM1	0	genome.wustl.edu	37	1	64100648	64100648	+	Silent	SNP	G	G	A			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	1	64100648	64100648	G	A	SNP	PGM1	ENST00000371083	human	ensembl	74_37	+1	known	silent	c.885	p.K295	1.000	pfam_A-D-PHexomutase_a/b/a-II	pfam_A-D-PHexomutase_a/b/a-I,pfam_A-D-PHexomutase_a/b/a-III,pfam_A-D-PHexomutase_a/b/a-II,pfam_A-D-PHexomutase_C,superfamily_A-D-PHexomutase_a/b/a-I/II/III,prints_Alpha-D-phosphohexomutase_SF	-	no_errors	PGM1	HGNC	ENSG00000079739				264	0	0	213	19	8.18966
PER3	0	genome.wustl.edu	37	1	7886602	7886602	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	1	7886602	7886602	T	C	SNP	PER3	ENST00000361923	human	ensembl	74_37	+1	known	missense	c.1996	p.S666P	0.000	NULL	pfam_Period_circadian-like_C,pfam_PAS_fold_3,pfam_PAS_fold,superfamily_PAS,smart_PAS,pfscan_PAS	-	no_errors	PER3	HGNC	ENSG00000049246				50	0	0	37	4	9.7561
WDR63	0	genome.wustl.edu	37	1	85551632	85551632	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	1	85551632	85551632	A	C	SNP	WDR63	ENST00000294664	human	ensembl	74_37	+1	known	missense	c.659	p.N220T	0.989	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	WDR63	HGNC	ENSG00000162643				56	0	0	71	9	11.25
CPN1	0	genome.wustl.edu	37	10	101802248	101802248	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	10	101802248	101802248	T	G	SNP	CPN1	ENST00000370418	human	ensembl	74_37	-1	known	missense	c.1313	p.K438T	0.887	superfamily_CarboxyPept-like_regulatory	pfam_Peptidase_M14,pfam_DUF2817,superfamily_CarboxyPept-like_regulatory,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPN1	HGNC	ENSG00000120054				91	0	0	93	8	7.92079
NOLC1	0	genome.wustl.edu	37	10	103919991	103919991	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	10	103919991	103919991	T	G	SNP	NOLC1	ENST00000405356	human	ensembl	74_37	+1	known	missense	c.1020	p.D340E	1.000	NULL	pfam_SRP40_C,pfscan_LisH_dimerisation	-	no_errors	NOLC1	HGNC	ENSG00000166197				172	0	0	130	18	12.1622
TRIM8	0	genome.wustl.edu	37	10	104416988	104416988	+	Silent	SNP	C	C	T			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	10	104416988	104416988	C	T	SNP	TRIM8	ENST00000302424	human	ensembl	74_37	+1	known	silent	c.1533	p.S511	0.856	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	TRIM8	HGNC	ENSG00000171206				44	0	0	29	4	12.1212
PNLIPRP3	0	genome.wustl.edu	37	10	118236234	118236234	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	10	118236234	118236234	A	C	SNP	PNLIPRP3	ENST00000369230	human	ensembl	74_37	+1	known	missense	c.1243	p.S415R	0.869	pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,pirsf_Lipoprotein_lipase_LIPH,prints_Lipase	pfam_Lipase_N,pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,pirsf_Lipoprotein_lipase_LIPH,prints_Lipase,prints_Lipase_panc	-	no_errors	PNLIPRP3	HGNC	ENSG00000203837				103	0	0	88	8	8.33333
SLC18A2	0	genome.wustl.edu	37	10	119003515	119003515	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	10	119003515	119003515	A	C	SNP	SLC18A2	ENST00000298472	human	ensembl	74_37	+1	known	missense	c.155	p.K52T	0.590	superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC18A2	HGNC	ENSG00000165646				58	0	0	40	6	13.0435
TACC2	0	genome.wustl.edu	37	10	123843481	123843481	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	10	123843481	123843481	T	C	SNP	TACC2	ENST00000334433	human	ensembl	74_37	+1	known	missense	c.1466	p.V489A	0.000	NULL	pfam_TACC	-	no_errors	TACC2	HGNC	ENSG00000138162				178	0	0	163	21	11.413
NEBL	0	genome.wustl.edu	37	10	21139351	21139351	+	Silent	SNP	T	T	G			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	10	21139351	21139351	T	G	SNP	NEBL	ENST00000377122	human	ensembl	74_37	-1	known	silent	c.1089	p.S363	0.554	pfam_Nebulin_35r-motif,smart_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Nebulin_35r-motif,smart_SH3_domain,pfscan_Nebulin_35r-motif,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	NEBL	HGNC	ENSG00000078114				147	0	0	158	13	7.60234
PGBD3	0	genome.wustl.edu	37	10	50724274	50724274	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	10	50724274	50724274	T	G	SNP	PGBD3	ENST00000603152	human	ensembl	74_37	-1	known	missense	c.2291	p.K764T	0.272	NULL	NULL	-	no_errors	PGBD3	HGNC	ENSG00000243251				57	0	0	46	10	17.8571
PCDH15	0	genome.wustl.edu	37	10	55700715	55700715	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	10	55700715	55700715	A	G	SNP	PCDH15	ENST00000320301	human	ensembl	74_37	-1	known	missense	c.3143	p.L1048P	1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH15	HGNC	ENSG00000150275				94	0	0	70	5	6.66667
ARHGAP19-SLIT1	0	genome.wustl.edu	37	10	99019212	99019212	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	10	99019212	99019212	A	C	SNP	ARHGAP19-SLIT1	ENST00000453547	human	ensembl	74_37	-1	known	missense	c.787	p.S263A	1.000	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP19-SLIT1	HGNC	ENSG00000269891				170	0	0	154	19	10.9827
USP28	0	genome.wustl.edu	37	11	113674571	113674571	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	11	113674571	113674571	C	T	SNP	USP28	ENST00000003302	human	ensembl	74_37	-1	known	missense	c.2687	p.R896Q	1.000	NULL	pfam_Peptidase_C19/C67,superfamily_UBA-like,pfscan_Peptidase_C19/C67	-	no_errors	USP28	HGNC	ENSG00000048028				70	0	0	63	10	13.6986
LRP4	0	genome.wustl.edu	37	11	46896598	46896598	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	11	46896598	46896598	G	A	SNP	LRP4	ENST00000378623	human	ensembl	74_37	-1	known	missense	c.3982	p.P1328S	1.000	smart_EGF-like_Ca-bd_dom,smart_EG-like_dom	pfam_LDLR_classB_rpt,pfam_LDrepeatLR_classA_rpt,pfam_EGF-like_Ca-bd_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP4	HGNC	ENSG00000134569				86	0	0	57	8	12.3077
OR51G1	0	genome.wustl.edu	37	11	4945175	4945175	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	11	4945175	4945175	A	C	SNP	OR51G1	ENST00000321961	human	ensembl	74_37	-1	known	missense	c.395	p.L132R	0.992	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR51G1	HGNC	ENSG00000176879				82	0	0	78	5	6.0241
OR4C6	0	genome.wustl.edu	37	11	55433389	55433389	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	11	55433389	55433389	T	A	SNP	OR4C6	ENST00000314259	human	ensembl	74_37	+1	known	missense	c.747	p.F249L	0.039	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4C6	HGNC	ENSG00000181903				167	0	0	169	9	5.05618
OR5D14	0	genome.wustl.edu	37	11	55563569	55563569	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	11	55563569	55563569	T	C	SNP	OR5D14	ENST00000335605	human	ensembl	74_37	+1	known	missense	c.538	p.F180L	0.531	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5D14	HGNC	ENSG00000186113				292	0	0	292	45	13.3531
OR56A3	0	genome.wustl.edu	37	11	5969389	5969389	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	11	5969389	5969389	A	C	SNP	OR56A3	ENST00000329564	human	ensembl	74_37	+1	known	missense	c.813	p.K271N	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR56A3	HGNC	ENSG00000184478				254	0	0	265	26	8.93471
MS4A6A	0	genome.wustl.edu	37	11	59949151	59949151	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	11	59949151	59949151	T	G	SNP	MS4A6A	ENST00000323961	human	ensembl	74_37	-1	known	missense	c.50	p.N17T	0.032	superfamily_MFS_dom_general_subst_transpt	pfam_CD20-like,superfamily_MFS_dom_general_subst_transpt	-	no_errors	MS4A6A	HGNC	ENSG00000110077				188	0	0	172	22	11.3402
MS4A10	0	genome.wustl.edu	37	11	60561521	60561521	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	11	60561521	60561521	T	C	SNP	MS4A10	ENST00000308287	human	ensembl	74_37	+1	known	missense	c.437	p.L146P	0.894	pfam_CD20-like	pfam_CD20-like	-	no_errors	MS4A10	HGNC	ENSG00000172689				144	0	0	119	19	13.7681
NUMA1	0	genome.wustl.edu	37	11	71724063	71724063	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	11	71724063	71724063	G	A	SNP	NUMA1	ENST00000393695	human	ensembl	74_37	-1	known	nonsense	c.4486	p.R1496*	0.783	NULL	superfamily_Prefoldin	-	no_errors	NUMA1	HGNC	ENSG00000137497				137	0	0	108	12	10
GPR83	0	genome.wustl.edu	37	11	94113847	94113847	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	11	94113847	94113847	A	T	SNP	GPR83	ENST00000243673	human	ensembl	74_37	-1	known	missense	c.740	p.L247H	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	GPR83	HGNC	ENSG00000123901				57	0	0	50	10	16.6667
NR1H4	0	genome.wustl.edu	37	12	100904824	100904824	+	Silent	SNP	G	G	A			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	12	100904824	100904824	G	A	SNP	NR1H4	ENST00000551379	human	ensembl	74_37	+1	known	silent	c.378	p.A126	0.000	prints_ThyrH_rcpt	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_ThyrH_rcpt	-	no_errors	NR1H4	HGNC	ENSG00000012504				122	1	0.813008	139	14	9.15033
STAB2	0	genome.wustl.edu	37	12	104144357	104144357	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	12	104144357	104144357	G	A	SNP	STAB2	ENST00000388887	human	ensembl	74_37	+1	known	missense	c.6439	p.G2147S	1.000	smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_FAS1_domain,pfam_Link,superfamily_C-type_lectin_fold,superfamily_FAS1_domain,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_EGF_laminin,smart_EGF-like_Ca-bd_dom,smart_FAS1_domain,smart_Link,pfscan_EG-like_dom,pfscan_FAS1_domain,pfscan_Link	-	no_errors	STAB2	HGNC	ENSG00000136011				145	0	0	118	21	15.1079
DAO	0	genome.wustl.edu	37	12	109294207	109294207	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	12	109294207	109294207	T	C	SNP	DAO	ENST00000228476	human	ensembl	74_37	+1	known	missense	c.940	p.Y314H	0.867	pfam_FAD-dep_OxRdtase	pfam_FAD-dep_OxRdtase	-	no_errors	DAO	HGNC	ENSG00000110887				129	0	0	107	10	8.54701
UBE3B	0	genome.wustl.edu	37	12	109959319	109959319	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	12	109959319	109959319	A	G	SNP	UBE3B	ENST00000342494	human	ensembl	74_37	+1	known	missense	c.2327	p.E776G	1.000	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,pfam_IQ_motif_EF-hand-BS,superfamily_HECT,superfamily_P-loop_NTPase,smart_IQ_motif_EF-hand-BS,smart_HECT,pfscan_HECT,pfscan_IQ_motif_EF-hand-BS	-	no_errors	UBE3B	HGNC	ENSG00000151148				87	0	0	79	12	13.1868
TMEM132D	0	genome.wustl.edu	37	12	129566470	129566470	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	12	129566470	129566470	T	G	SNP	TMEM132D	ENST00000422113	human	ensembl	74_37	-1	known	missense	c.1757	p.E586A	0.974	NULL	NULL	-	no_errors	TMEM132D	HGNC	ENSG00000151952				109	0	0	75	7	8.53659
LRRK2	0	genome.wustl.edu	37	12	40716140	40716140	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	12	40716140	40716140	A	C	SNP	LRRK2	ENST00000298910	human	ensembl	74_37	+1	known	missense	c.5337	p.Q1779H	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_MIRO-like,pfam_Small_GTPase,pfam_Leu-rich_rpt,pfam_Small_GTPase_ARF/SAR,superfamily_Kinase-like_dom,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,superfamily_WD40_repeat_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Small_GTPase_Rab_type,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,prints_Small_GTPase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	LRRK2	HGNC	ENSG00000188906				210	0	0	208	12	5.45455
TMEM117	0	genome.wustl.edu	37	12	44782372	44782372	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	12	44782372	44782372	T	G	SNP	TMEM117	ENST00000266534	human	ensembl	74_37	+1	known	missense	c.1462	p.L488V	0.990	NULL	NULL	-	no_errors	TMEM117	HGNC	ENSG00000139173				189	0	0	194	24	11.0092
ERBB3	0	genome.wustl.edu	37	12	56478854	56478854	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	12	56478854	56478854	G	T	SNP	ERBB3	ENST00000267101	human	ensembl	74_37	+1	known	missense	c.310	p.V104L	0.994	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_EGF_rcpt_L	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Furin-like_Cys-rich_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	ERBB3	HGNC	ENSG00000065361				194	0	0	160	20	11.1111
ESYT1	0	genome.wustl.edu	37	12	56525562	56525562	+	Silent	SNP	C	C	T			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	12	56525562	56525562	C	T	SNP	ESYT1	ENST00000267113	human	ensembl	74_37	+1	known	silent	c.834	p.T278	1.000	NULL	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,prints_C2_dom,pfscan_C2_dom	-	no_errors	ESYT1	HGNC	ENSG00000139641				119	0	0	93	11	10.5769
TPI1	0	genome.wustl.edu	37	12	6976707	6976707	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	12	6976707	6976707	C	T	SNP	TPI1	ENST00000229270	human	ensembl	74_37	+1	known	missense	c.88	p.L30F	0.996	NULL	pfam_Triosephosphate_isomerase,superfamily_Triosephosphate_isomerase,tigrfam_Triosephosphate_isomerase	-	no_errors	TPI1	HGNC	ENSG00000111669				33	0	0	21	5	19.2308
MYF6	0	genome.wustl.edu	37	12	81101582	81101582	+	Silent	SNP	A	A	G			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	12	81101582	81101582	A	G	SNP	MYF6	ENST00000228641	human	ensembl	74_37	+1	known	silent	c.84	p.A28	0.911	pfam_Basic,smart_Basic	pfam_Basic,pfam_bHLH_dom,superfamily_bHLH_dom,smart_Basic,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	MYF6	HGNC	ENSG00000111046				155	0	0	139	16	10.3226
A2ML1	0	genome.wustl.edu	37	12	8998053	8998053	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	12	8998053	8998053	A	C	SNP	A2ML1	ENST00000299698	human	ensembl	74_37	+1	known	missense	c.1492	p.S498R	0.001	pfam_A2M_N_2	pfam_A2M_comp,pfam_Macroglobln_a2,pfam_A2M_N_2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_SV_autoAg,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd	-	no_errors	A2ML1	HGNC	ENSG00000166535				75	0	0	61	7	10.2941
NALCN	0	genome.wustl.edu	37	13	101944618	101944618	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	13	101944618	101944618	A	G	SNP	NALCN	ENST00000251127	human	ensembl	74_37	-1	known	missense	c.899	p.F300S	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom	-	no_errors	NALCN	HGNC	ENSG00000102452				43	0	0	44	7	13.7255
PARP4	0	genome.wustl.edu	37	13	25049733	25049733	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	13	25049733	25049733	A	C	SNP	PARP4	ENST00000381989	human	ensembl	74_37	-1	known	missense	c.1791	p.D597E	0.995	NULL	pfam_Poly(ADP-ribose)pol_cat_dom,pfam_VIT,pfam_VWF_A,pfam_BRCT_dom,superfamily_Poly(ADP-ribose)pol_reg_dom,superfamily_BRCT_dom,smart_BRCT_dom,smart_VIT,smart_VWF_A,pfscan_BRCT_dom,pfscan_VWF_A,pfscan_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_reg_dom	-	no_errors	PARP4	HGNC	ENSG00000102699				106	0	0	87	15	14.7059
RTL1	0	genome.wustl.edu	37	14	101348153	101348153	+	Silent	SNP	T	T	A			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	14	101348153	101348153	T	A	SNP	RTL1	ENST00000534062	human	ensembl	74_37	-1	known	silent	c.2973	p.R991	0.000	NULL	pfam_Retrotrans_gag_dom,superfamily_Peptidase_aspartic_dom	-	no_errors	RTL1	HGNC	ENSG00000254656				79	0	0	82	6	6.81818
ENSG00000258364	0	genome.wustl.edu	37	14	19413621	19413621	+	RNA	SNP	C	C	T			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	14	19413621	19413621	C	T	SNP	ENSG00000258364	ENST00000550928	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-536C10.16	Clone_based_vega_gene	ENSG00000258364				10	0	0	2	4	66.6667
LTB4R	0	genome.wustl.edu	37	14	24785153	24785153	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	14	24785153	24785153	T	A	SNP	LTB4R	ENST00000345363	human	ensembl	74_37	+1	known	missense	c.296	p.V99D	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Leukotriene_B4_rcpt,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Leukotriene_B4_typ-1_rcpt,prints_Leukotriene_B4_rcpt,prints_GPCR_Rhodpsn	-	no_errors	LTB4R	HGNC	ENSG00000213903				118	0	0	97	10	9.34579
RALGAPA1	0	genome.wustl.edu	37	14	36096777	36096777	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	14	36096777	36096777	T	C	SNP	RALGAPA1	ENST00000258840	human	ensembl	74_37	-1	known	missense	c.4999	p.S1667G	0.983	NULL	pfam_Rap_GAP_dom,superfamily_ARM-type_fold,pfscan_Rap_GAP_dom	-	no_errors	RALGAPA1	HGNC	ENSG00000174373				64	0	0	63	9	12.5
FSCB	0	genome.wustl.edu	37	14	44975246	44975246	+	Silent	SNP	T	T	C			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	14	44975246	44975246	T	C	SNP	FSCB	ENST00000340446	human	ensembl	74_37	-1	known	silent	c.945	p.K315	0.001	NULL	NULL	-	no_errors	FSCB	HGNC	ENSG00000189139				98	0	0	106	6	5.35714
MAX	0	genome.wustl.edu	37	14	65544747	65544747	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	14	65544747	65544747	C	T	SNP	MAX	ENST00000358664	human	ensembl	74_37	-1	known	missense	c.179	p.R60Q	1.000	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	MAX	HGNC	ENSG00000125952				116	0	0	77	11	12.5
UNC79	0	genome.wustl.edu	37	14	94007143	94007143	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	14	94007143	94007143	A	G	SNP	UNC79	ENST00000553484	human	ensembl	74_37	+1	known	missense	c.1490	p.Q497R	1.000	NULL	superfamily_P-loop_NTPase,superfamily_ARM-type_fold	-	no_errors	UNC79	HGNC	ENSG00000133958				134	0	0	125	8	6.01504
DICER1	0	genome.wustl.edu	37	14	95570115	95570115	+	Silent	SNP	C	C	T			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	14	95570115	95570115	C	T	SNP	DICER1	ENST00000343455	human	ensembl	74_37	-1	known	silent	c.3618	p.K1206	1.000	NULL	pfam_RNase_III_dom,pfam_PAZ_dom,pfam_Dicer_dimerisation_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,superfamily_RNase_III_dom,superfamily_P-loop_NTPase,superfamily_PAZ_dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_PAZ_dom,smart_RNase_III_dom,smart_dsRNA-bd_dom,pfscan_PAZ_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_dsRNA-bd_dom,pfscan_RNase_III_dom	-	no_errors	DICER1	HGNC	ENSG00000100697				137	0	0	123	10	7.5188
SYNE3	0	genome.wustl.edu	37	14	95912417	95912417	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	14	95912417	95912417	C	G	SNP	SYNE3	ENST00000334258	human	ensembl	74_37	-1	known	missense	c.1461	p.M487I	0.020	NULL	pfam_KASH,pfam_Spectrin_repeat,superfamily_Retrov_capsid_C,smart_Spectrin/alpha-actinin,pfscan_KASH	-	no_errors	SYNE3	HGNC	ENSG00000176438				151	0	0	133	15	10.1351
DNM1P47	0	genome.wustl.edu	37	15	102305092	102305092	+	RNA	SNP	A	A	G			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	15	102305092	102305092	A	G	SNP	DNM1P47	ENST00000561463	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.904	-	-	-	no_errors	DNM1P47	HGNC	ENSG00000259660				40	0	0	33	3	8.33333
OR4F6	0	genome.wustl.edu	37	15	102346405	102346405	+	Silent	SNP	T	T	C			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	15	102346405	102346405	T	C	SNP	OR4F6	ENST00000328882	human	ensembl	74_37	+1	known	silent	c.483	p.A161	0.580	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4F6	HGNC	ENSG00000184140				265	0	0	233	39	14.3382
POTEB2	0	genome.wustl.edu	37	15	21071460	21071460	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	15	21071460	21071460	C	T	SNP	POTEB2	ENST00000454856	human	ensembl	74_37	-1	known	missense	c.151	p.D51N	0.034	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	POTEB2	HGNC	ENSG00000230031				9	0	0	1	4	80
OR4N4	0	genome.wustl.edu	37	15	22382731	22382731	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	15	22382731	22382731	T	G	SNP	OR4N4	ENST00000328795	human	ensembl	74_37	+1	known	missense	c.259	p.S87A	0.957	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4N4	HGNC	ENSG00000183706				206	0	0	205	13	5.9633
SLC12A6	0	genome.wustl.edu	37	15	34533513	34533513	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	15	34533513	34533513	T	C	SNP	SLC12A6	ENST00000558589	human	ensembl	74_37	-1	known	missense	c.2161	p.I721V	0.999	pfam_AA-permease/SLC12A_dom,tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease/SLC12A_dom,pfam_K/Cl_cotranspt_1/3,prints_KCL_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A6	HGNC	ENSG00000140199				68	0	0	56	4	6.66667
GPR176	0	genome.wustl.edu	37	15	40094058	40094058	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	15	40094058	40094058	A	G	SNP	GPR176	ENST00000561100	human	ensembl	74_37	-1	known	missense	c.823	p.F275L	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR176	HGNC	ENSG00000166073				73	0	0	69	14	16.8675
NDUFAF1	0	genome.wustl.edu	37	15	41679693	41679693	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	15	41679693	41679693	T	G	SNP	NDUFAF1	ENST00000260361	human	ensembl	74_37	-1	known	missense	c.933	p.E311D	1.000	NULL	pfam_NADH-UbQ_OxRdtase-assoc_prot30,superfamily_Galactose-bd-like	-	no_errors	NDUFAF1	HGNC	ENSG00000137806				130	0	0	139	10	6.71141
DNAJA4	0	genome.wustl.edu	37	15	78566640	78566640	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	15	78566640	78566640	A	G	SNP	DNAJA4	ENST00000394855	human	ensembl	74_37	+1	known	missense	c.607	p.I203V	1.000	pfam_HSP_DnaJ_Cys-rich_dom,superfamily_HSP40/DnaJ_pept-bd,superfamily_HSP_DnaJ_Cys-rich_dom,pfscan_HSP_DnaJ_Cys-rich_dom	pfam_DnaJ_domain,pfam_DnaJ_C,pfam_HSP_DnaJ_Cys-rich_dom,superfamily_DnaJ_domain,superfamily_HSP40/DnaJ_pept-bd,superfamily_HSP_DnaJ_Cys-rich_dom,smart_DnaJ_domain,pfscan_DnaJ_domain,pfscan_HSP_DnaJ_Cys-rich_dom,prints_DnaJ_domain	-	no_errors	DNAJA4	HGNC	ENSG00000140403				77	0	0	61	7	10.2941
NETO2	0	genome.wustl.edu	37	16	47117496	47117496	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	16	47117496	47117496	T	C	SNP	NETO2	ENST00000562435	human	ensembl	74_37	-1	known	missense	c.1214	p.D405G	1.000	NULL	pfam_CUB_dom,pfam_LDrepeatLR_classA_rpt,superfamily_CUB_dom,superfamily_LDrepeatLR_classA_rpt,smart_CUB_dom,smart_LDrepeatLR_classA_rpt,pfscan_CUB_dom,pfscan_LDrepeatLR_classA_rpt	-	no_errors	NETO2	HGNC	ENSG00000171208				129	0	0	124	13	9.48905
LPCAT2	0	genome.wustl.edu	37	16	55613109	55613109	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	16	55613109	55613109	T	G	SNP	LPCAT2	ENST00000262134	human	ensembl	74_37	+1	known	missense	c.1403	p.V468G	1.000	NULL	pfam_EF_hand_dom,pfam_Plipid/glycerol_acylTrfase,smart_Plipid/glycerol_acylTrfase,smart_EF_hand_dom,pfscan_EF_hand_dom,prints_Recoverin	-	no_errors	LPCAT2	HGNC	ENSG00000087253				98	0	0	110	8	6.77966
GPR114	0	genome.wustl.edu	37	16	57597818	57597818	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	16	57597818	57597818	G	A	SNP	GPR114	ENST00000340339	human	ensembl	74_37	+1	known	missense	c.356	p.R119Q	0.000	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like,prints_GPCR_2_orphan_rcpt_GPR56	-	no_errors	GPR114	HGNC	ENSG00000159618				94	0	0	69	7	9.21053
MTSS1L	0	genome.wustl.edu	37	16	70710872	70710872	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	16	70710872	70710872	C	T	SNP	MTSS1L	ENST00000338779	human	ensembl	74_37	-1	known	missense	c.742	p.D248N	1.000	NULL	pfam_IRSp53/MIM_homology_IMD	-	no_errors	MTSS1L	HGNC	ENSG00000132613				48	0	0	35	4	10.2564
CTU2	0	genome.wustl.edu	37	16	88779164	88779164	+	Silent	SNP	G	G	A			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	16	88779164	88779164	G	A	SNP	CTU2	ENST00000567949	human	ensembl	74_37	+1	known	silent	c.801	p.P267	0.000	NULL	pfam_Thiouridylase_cyt_su2	-	no_errors	CTU2	HGNC	ENSG00000174177				50	0	0	30	5	14.2857
NXPH3	0	genome.wustl.edu	37	17	47656222	47656222	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	17	47656222	47656222	T	G	SNP	NXPH3	ENST00000328741	human	ensembl	74_37	+1	known	missense	c.319	p.S107A	1.000	pfam_NXPH/NXPE,pirsf_Neurexophilin	pfam_NXPH/NXPE,pirsf_Neurexophilin	-	no_errors	NXPH3	HGNC	ENSG00000182575				59	0	0	60	4	6.25
ABCA6	0	genome.wustl.edu	37	17	67087355	67087355	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	17	67087355	67087355	T	C	SNP	ABCA6	ENST00000284425	human	ensembl	74_37	-1	known	missense	c.3457	p.S1153G	0.000	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA6	HGNC	ENSG00000154262				53	0	0	52	5	8.77193
AZI1	0	genome.wustl.edu	37	17	79167799	79167799	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	17	79167799	79167799	C	T	SNP	AZI1	ENST00000269392	human	ensembl	74_37	-1	known	missense	c.2257	p.E753K	0.985	NULL	superfamily_t-SNARE	-	no_errors	AZI1	HGNC	ENSG00000141577				17	0	0	13	3	18.75
ZNF521	0	genome.wustl.edu	37	18	22807019	22807019	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	18	22807019	22807019	T	C	SNP	ZNF521	ENST00000361524	human	ensembl	74_37	-1	known	missense	c.863	p.E288G	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF521	HGNC	ENSG00000198795				113	0	0	84	8	8.69565
PIK3C3	0	genome.wustl.edu	37	18	39647433	39647433	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	18	39647433	39647433	G	C	SNP	PIK3C3	ENST00000262039	human	ensembl	74_37	+1	known	missense	c.2605	p.A869P	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pirsf_PI3K_Vps34,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_C2_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pirsf_PI3K_Vps34,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3C3	HGNC	ENSG00000078142				82	0	0	73	8	9.87654
RAX	0	genome.wustl.edu	37	18	56936342	56936342	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	18	56936342	56936342	T	G	SNP	RAX	ENST00000334889	human	ensembl	74_37	-1	known	missense	c.935	p.K312T	1.000	NULL	pfam_Homeobox_dom,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_OAR_dom,pfscan_Homeobox_dom	-	no_errors	RAX	HGNC	ENSG00000134438				38	0	0	20	3	13.0435
RTTN	0	genome.wustl.edu	37	18	67684867	67684867	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	18	67684867	67684867	C	T	SNP	RTTN	ENST00000255674	human	ensembl	74_37	-1	known	missense	c.6197	p.G2066E	0.999	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	RTTN	HGNC	ENSG00000176225				92	0	0	92	10	9.80392
APC2	0	genome.wustl.edu	37	19	1465645	1465645	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	19	1465645	1465645	A	G	SNP	APC2	ENST00000233607	human	ensembl	74_37	+1	known	missense	c.2345	p.D782G	0.972	NULL	pfam_APC_basic_dom,pfam_APC_dom,pfam_APC_Cys-rich_rpt,pfam_Armadillo,pfam_SAMP,superfamily_ARM-type_fold,superfamily_Prefoldin,smart_Armadillo	-	no_errors	APC2	HGNC	ENSG00000115266				12	0	0	21	4	16
SLC1A6	0	genome.wustl.edu	37	19	15079169	15079169	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	19	15079169	15079169	C	T	SNP	SLC1A6	ENST00000221742	human	ensembl	74_37	-1	known	missense	c.494	p.R165Q	0.630	pfam_Na-dicarboxylate_symporter	pfam_Na-dicarboxylate_symporter,prints_Na-dicarboxylate_symporter	-	no_errors	SLC1A6	HGNC	ENSG00000105143				32	0	0	28	7	20
CYP4F2	0	genome.wustl.edu	37	19	15989663	15989663	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	19	15989663	15989663	T	G	SNP	CYP4F2	ENST00000221700	human	ensembl	74_37	-1	known	missense	c.1481	p.D494A	0.021	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II	-	no_errors	CYP4F2	HGNC	ENSG00000186115				66	0	0	46	8	14.8148
JAK3	0	genome.wustl.edu	37	19	17951088	17951088	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	19	17951088	17951088	C	T	SNP	JAK3	ENST00000458235	human	ensembl	74_37	-1	known	missense	c.1205	p.R402H	0.998	smart_SH2,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_FERM_central,smart_Band_41_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_FERM_domain,pfscan_Prot_kinase_dom,prints_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Tyr_kinase_non-rcpt_Jak3,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	JAK3	HGNC	ENSG00000105639				46	0	0	44	5	10.2041
ISYNA1	0	genome.wustl.edu	37	19	18547246	18547246	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	19	18547246	18547246	G	A	SNP	ISYNA1	ENST00000338128	human	ensembl	74_37	-1	known	missense	c.653	p.A218V	0.717	pfam_Myo-inos-1-P_Synthase,pirsf_Myo-inos-1-P_Synthase	pfam_Myo-inos-1-P_Synthase,pfam_Myo-inos-1-P_Synthase_GAPDH,pirsf_Myo-inos-1-P_Synthase	-	no_errors	ISYNA1	HGNC	ENSG00000105655				164	0	0	128	19	12.9252
ZNF536	0	genome.wustl.edu	37	19	31040061	31040061	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	19	31040061	31040061	G	T	SNP	ZNF536	ENST00000355537	human	ensembl	74_37	+1	known	missense	c.3535	p.D1179Y	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF536	HGNC	ENSG00000198597				100	0	0	105	9	7.89474
SPINT2	0	genome.wustl.edu	37	19	38779813	38779813	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	19	38779813	38779813	G	A	SNP	SPINT2	ENST00000301244	human	ensembl	74_37	+1	known	missense	c.373	p.D125N	0.032	NULL	pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,smart_Prot_inh_Kunz-m,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	SPINT2	HGNC	ENSG00000167642				146	0	0	134	15	10.0671
CYP2A13	0	genome.wustl.edu	37	19	41595958	41595958	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	19	41595958	41595958	C	T	SNP	CYP2A13	ENST00000330436	human	ensembl	74_37	+1	known	missense	c.350	p.A117V	0.109	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-I_CYP2A-like,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV	-	no_errors	CYP2A13	HGNC	ENSG00000197838				36	0	0	40	9	18.3673
ATP1A3	0	genome.wustl.edu	37	19	42479939	42479939	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	19	42479939	42479939	A	G	SNP	ATP1A3	ENST00000302102	human	ensembl	74_37	-1	known	missense	c.2105	p.V702A	1.000	pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP1A3	HGNC	ENSG00000105409				163	0	0	157	18	10.2857
ARRDC5	0	genome.wustl.edu	37	19	4891231	4891231	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	19	4891231	4891231	C	T	SNP	ARRDC5	ENST00000381781	human	ensembl	74_37	-1	known	missense	c.856	p.G286S	0.000	pfam_Arrestin_C-like,superfamily_Ig_E-set	pfam_Arrestin-like_N,pfam_Arrestin_C-like,superfamily_Ig_E-set	-	no_errors	ARRDC5	HGNC	ENSG00000205784				204	1	0.487805	197	27	12.0536
TRPM4	0	genome.wustl.edu	37	19	49705384	49705384	+	Silent	SNP	C	C	T			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	19	49705384	49705384	C	T	SNP	TRPM4	ENST00000252826	human	ensembl	74_37	+1	known	silent	c.3117	p.L1039	1.000	NULL	pfam_Ion_trans_dom	-	no_errors	TRPM4	HGNC	ENSG00000130529				145	0	0	110	10	8.33333
POLD1	0	genome.wustl.edu	37	19	50910659	50910659	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	19	50910659	50910659	G	A	SNP	POLD1	ENST00000440232	human	ensembl	74_37	+1	known	missense	c.1762	p.E588K	1.000	pfam_DNA-dir_DNA_pol_B_multi_dom,smart_DNA-dir_DNA_pol_B,tigrfam_DNA-dir_DNA_pol_B_pol2	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B,tigrfam_DNA-dir_DNA_pol_B_pol2	-	no_errors	POLD1	HGNC	ENSG00000062822				21	0	0	24	8	25
ZNF610	0	genome.wustl.edu	37	19	52857592	52857592	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	19	52857592	52857592	A	C	SNP	ZNF610	ENST00000321287	human	ensembl	74_37	+1	known	missense	c.279	p.K93N	0.006	pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF610	HGNC	ENSG00000167554				66	0	0	48	15	23.8095
ZNF347	0	genome.wustl.edu	37	19	53645784	53645784	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	19	53645784	53645784	T	A	SNP	ZNF347	ENST00000452676	human	ensembl	74_37	-1	known	missense	c.300	p.K100N	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF347	HGNC	ENSG00000197937				39	0	0	28	5	15.1515
LILRA1	0	genome.wustl.edu	37	19	55112422	55112422	+	RNA	SNP	T	T	G			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	19	55112422	55112422	T	G	SNP	LILRA1	ENST00000473156	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	LILRA1	HGNC	ENSG00000104974				21	0	0	11	5	31.25
KIR2DL1	0	genome.wustl.edu	37	19	55284967	55284967	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	19	55284967	55284967	T	G	SNP	KIR2DL1	ENST00000336077	human	ensembl	74_37	+1	known	missense	c.253	p.F85V	0.003	pfam_Immunoglobulin,smart_Ig_sub	pfam_Immunoglobulin,smart_Ig_sub	-	no_errors	KIR2DL1	HGNC	ENSG00000125498				189	0	0	129	39	23.2143
NLRP9	0	genome.wustl.edu	37	19	56243496	56243496	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	19	56243496	56243496	T	G	SNP	NLRP9	ENST00000332836	human	ensembl	74_37	-1	known	missense	c.1701	p.E567D	0.000	NULL	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP9	HGNC	ENSG00000185792				61	0	0	65	13	16.6667
MUC16	0	genome.wustl.edu	37	19	9018538	9018538	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	19	9018538	9018538	A	C	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.37636	p.F12546V	0.184	pfam_SEA_dom	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				259	0	0	233	24	9.33852
OR7G1	0	genome.wustl.edu	37	19	9226256	9226256	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	19	9226256	9226256	G	T	SNP	OR7G1	ENST00000293614	human	ensembl	74_37	-1	known	missense	c.184	p.L62I	0.999	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR7G1	HGNC	ENSG00000161807				196	0	0	180	17	8.62944
ZNF559	0	genome.wustl.edu	37	19	9453044	9453044	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	19	9453044	9453044	T	G	SNP	ZNF559	ENST00000393883	human	ensembl	74_37	+1	known	missense	c.917	p.F306C	0.552	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF559	HGNC	ENSG00000188321				103	0	0	98	20	16.9492
IL1R2	0	genome.wustl.edu	37	2	102625053	102625053	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	2	102625053	102625053	G	A	SNP	IL1R2	ENST00000332549	human	ensembl	74_37	+1	known	missense	c.16	p.V6M	0.000	NULL	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom,prints_IL-1_rcpt_II-typ,prints_IL-1_rcpt_I/II-typ	-	no_errors	IL1R2	HGNC	ENSG00000115590				309	0	0	326	27	7.64873
RGPD4	0	genome.wustl.edu	37	2	108477254	108477254	+	Silent	SNP	A	A	G			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	2	108477254	108477254	A	G	SNP	RGPD4	ENST00000354986	human	ensembl	74_37	+1	known	silent	c.1791	p.R597	0.998	NULL	pfam_Ran_bind_dom,pfam_GRIP,pfam_TPR_1,pfam_TPR_2,superfamily_GRIP,smart_TPR_repeat,smart_Ran_bind_dom,smart_GRIP,pfscan_GRIP,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Ran_bind_dom	-	no_errors	RGPD4	HGNC	ENSG00000196862				268	0	0	241	29	10.7407
EDAR	0	genome.wustl.edu	37	2	109513596	109513596	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	2	109513596	109513596	T	G	SNP	EDAR	ENST00000376651	human	ensembl	74_37	-1	known	missense	c.1210	p.K404Q	1.000	pfam_Death_domain,superfamily_DEATH-like_dom	pfam_Death_domain,superfamily_DEATH-like_dom	-	no_errors	EDAR	HGNC	ENSG00000135960				85	0	0	86	8	8.51064
DPP10	0	genome.wustl.edu	37	2	115200414	115200414	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	2	115200414	115200414	A	G	SNP	DPP10	ENST00000410059	human	ensembl	74_37	+1	known	missense	c.59	p.K20R	1.000	NULL	pfam_Peptidase_S9B,pfam_Peptidase_S9	-	no_errors	DPP10	HGNC	ENSG00000175497				38	0	0	57	7	10.9375
CCDC93	0	genome.wustl.edu	37	2	118698836	118698836	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	2	118698836	118698836	T	C	SNP	CCDC93	ENST00000376300	human	ensembl	74_37	-1	known	missense	c.1451	p.K484R	1.000	NULL	pfam_DUF2037	-	no_errors	CCDC93	HGNC	ENSG00000125633				95	0	0	103	11	9.64912
MGAT5	0	genome.wustl.edu	37	2	135206285	135206285	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	2	135206285	135206285	A	C	SNP	MGAT5	ENST00000281923	human	ensembl	74_37	+1	known	missense	c.2093	p.K698T	1.000	NULL	NULL	-	no_errors	MGAT5	HGNC	ENSG00000152127				228	0	0	210	16	7.07965
THSD7B	0	genome.wustl.edu	37	2	138208477	138208477	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	2	138208477	138208477	A	G	SNP	THSD7B	ENST00000272643	human	ensembl	74_37	+1	known	missense	c.3022	p.S1008G	0.966	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD7B	HGNC	ENSG00000144229				71	0	0	56	5	8.19672
LRP1B	0	genome.wustl.edu	37	2	141625218	141625218	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	2	141625218	141625218	T	G	SNP	LRP1B	ENST00000389484	human	ensembl	74_37	-1	known	missense	c.4520	p.Q1507P	1.000	NULL	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702				160	0	0	166	15	8.28729
GCG	0	genome.wustl.edu	37	2	163000597	163000597	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	2	163000597	163000597	A	G	SNP	GCG	ENST00000375497	human	ensembl	74_37	-1	known	missense	c.476	p.L159P	0.999	pfam_Glucagon_GIP_secretin_VIP,smart_Glucagon_GIP_secretin_VIP	pfam_Glucagon_GIP_secretin_VIP,smart_Glucagon_GIP_secretin_VIP,prints_Glucagon_GIP_secretin_VIP	-	no_errors	GCG	HGNC	ENSG00000115263				96	0	0	95	17	15.1786
CSRNP3	0	genome.wustl.edu	37	2	166535430	166535430	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	2	166535430	166535430	G	A	SNP	CSRNP3	ENST00000314499	human	ensembl	74_37	+1	known	missense	c.925	p.V309I	0.965	NULL	prints_Cys/Ser-rich_nuc_prot	-	no_errors	CSRNP3	HGNC	ENSG00000178662				118	0	0	91	13	12.5
XIRP2	0	genome.wustl.edu	37	2	168100111	168100111	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	2	168100111	168100111	G	A	SNP	XIRP2	ENST00000295237	human	ensembl	74_37	+1	known	missense	c.2209	p.E737K	1.000	NULL	pfam_Actin-binding_Xin_repeat	-	no_errors	XIRP2	HGNC	ENSG00000163092				57	0	0	46	4	8
TTN	0	genome.wustl.edu	37	2	179425966	179425966	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	2	179425966	179425966	C	T	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.77189	p.R25730Q	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				90	0	0	87	14	13.8614
TTN	0	genome.wustl.edu	37	2	179445318	179445318	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	2	179445318	179445318	A	C	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.59084	p.L19695R	1.000	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				48	0	0	34	6	15
TTN	0	genome.wustl.edu	37	2	179452255	179452255	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	2	179452255	179452255	C	T	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.56077	p.V18693I	1.000	pfam_Ig_I-set,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				39	0	0	47	5	9.61538
TTN	0	genome.wustl.edu	37	2	179458569	179458569	+	Silent	SNP	T	T	C			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	2	179458569	179458569	T	C	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	silent	c.50754	p.P16918	0.908	pfam_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				52	0	0	49	5	9.25926
TTN-AS1	0	genome.wustl.edu	37	2	179469665	179469665	+	RNA	SNP	T	T	G			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	2	179469665	179469665	T	G	SNP	TTN-AS1	ENST00000419746	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TTN-AS1	HGNC	ENSG00000237298				141	0	0	132	18	12
PLCL1	0	genome.wustl.edu	37	2	198950584	198950584	+	Silent	SNP	T	T	C			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	2	198950584	198950584	T	C	SNP	PLCL1	ENST00000428675	human	ensembl	74_37	+1	known	silent	c.2343	p.T781	0.803	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_Pleckstrin_homology,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCL1	HGNC	ENSG00000115896				149	0	0	132	23	14.8387
IKZF2	0	genome.wustl.edu	37	2	213878645	213878645	+	Silent	SNP	T	T	C			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	2	213878645	213878645	T	C	SNP	IKZF2	ENST00000434687	human	ensembl	74_37	-1	known	silent	c.726	p.E242	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	IKZF2	HGNC	ENSG00000030419				89	0	0	92	14	13.2075
PAX1	0	genome.wustl.edu	37	20	21695269	21695269	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	20	21695269	21695269	C	T	SNP	PAX1	ENST00000398485	human	ensembl	74_37	+1	known	missense	c.1433	p.A478V	0.000	NULL	pfam_Paired_dom,superfamily_Homeodomain-like,smart_Paired_dom,pfscan_Paired_dom,prints_Paired_dom	-	no_errors	PAX1	HGNC	ENSG00000125813				15	0	0	13	3	18.75
SSTR4	0	genome.wustl.edu	37	20	23016968	23016968	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	20	23016968	23016968	T	G	SNP	SSTR4	ENST00000255008	human	ensembl	74_37	+1	known	missense	c.848	p.L283R	0.965	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfscan_GPCR_Rhodpsn_7TM,prints_Somatstn_rcpt_4,prints_Somatstn_rcpt,prints_Neuropept_B/W_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Somatstn_rcpt_4,prints_GPCR_Rhodpsn,prints_Somatstn_rcpt,prints_Opioid_rcpt,prints_Neuropept_B/W_rcpt,prints_NPY_rcpt,prints_Somatstn_rcpt_1	-	no_errors	SSTR4	HGNC	ENSG00000132671				136	0	0	140	22	13.5802
NAPB	0	genome.wustl.edu	37	20	23383641	23383641	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	20	23383641	23383641	T	C	SNP	NAPB	ENST00000377026	human	ensembl	74_37	-1	known	missense	c.167	p.K56R	1.000	prints_NSF_attach	prints_NSF_attach	-	no_errors	NAPB	HGNC	ENSG00000125814				57	0	0	52	7	11.8644
DEFB132	0	genome.wustl.edu	37	20	238424	238424	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	20	238424	238424	A	G	SNP	DEFB132	ENST00000382376	human	ensembl	74_37	+1	known	missense	c.5	p.K2R	0.991	NULL	NULL	-	no_errors	DEFB132	HGNC	ENSG00000186458				65	0	0	71	8	10.1266
DLGAP4	0	genome.wustl.edu	37	20	35064645	35064645	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	20	35064645	35064645	G	C	SNP	DLGAP4	ENST00000339266	human	ensembl	74_37	+1	known	missense	c.1133	p.S378T	1.000	NULL	pfam_GKAP	-	no_errors	DLGAP4	HGNC	ENSG00000080845				42	0	0	56	3	5.08475
VSTM2L	0	genome.wustl.edu	37	20	36572448	36572448	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	20	36572448	36572448	C	T	SNP	VSTM2L	ENST00000373459	human	ensembl	74_37	+1	putative	nonsense	c.187	p.R63*	1.000	NULL	NULL	-	no_errors	VSTM2L	HGNC	ENSG00000132821				40	0	0	44	4	8.33333
RBCK1	0	genome.wustl.edu	37	20	402813	402813	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	20	402813	402813	G	A	SNP	RBCK1	ENST00000382214	human	ensembl	74_37	+1	known	missense	c.935	p.R312K	1.000	NULL	pfam_Znf_RanBP2,smart_Znf_RanBP2,pfscan_Znf_RanBP2,pfscan_Ubiquitin_supergroup	-	no_errors	RBCK1	HGNC	ENSG00000125826				172	0	0	177	34	16.1137
PREX1	0	genome.wustl.edu	37	20	47267989	47267989	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	20	47267989	47267989	C	A	SNP	PREX1	ENST00000371941	human	ensembl	74_37	-1	known	missense	c.2600	p.C867F	1.000	NULL	pfam_DH-domain,pfam_DEP_dom,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX1	HGNC	ENSG00000124126				93	0	0	81	11	11.9565
SALL4	0	genome.wustl.edu	37	20	50406626	50406626	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	20	50406626	50406626	T	C	SNP	SALL4	ENST00000217086	human	ensembl	74_37	-1	known	missense	c.2396	p.K799R	0.987	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SALL4	HGNC	ENSG00000101115				147	0	0	141	11	7.23684
CASS4	0	genome.wustl.edu	37	20	55027707	55027707	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	20	55027707	55027707	A	T	SNP	CASS4	ENST00000360314	human	ensembl	74_37	+1	known	missense	c.1475	p.E492V	0.078	pfam_Serine_rich	pfam_Serine_rich,pfam_CAS_DUF3513,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	CASS4	HGNC	ENSG00000087589				63	0	0	49	11	18.3333
CDH26	0	genome.wustl.edu	37	20	58564160	58564160	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	20	58564160	58564160	G	T	SNP	CDH26	ENST00000244047	human	ensembl	74_37	+1	known	missense	c.1225	p.A409S	0.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH26	HGNC	ENSG00000124215				485	0	0	463	52	10.0971
LIPI	0	genome.wustl.edu	37	21	15561478	15561478	+	Silent	SNP	T	T	C			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	21	15561478	15561478	T	C	SNP	LIPI	ENST00000344577	human	ensembl	74_37	-1	known	silent	c.372	p.E124	0.011	pfam_Lipase_N,pirsf_Lipoprotein_lipase_LIPH	pfam_Lipase_N,pirsf_Lipoprotein_lipase_LIPH,prints_Lipase	-	no_errors	LIPI	HGNC	ENSG00000188992				90	0	0	76	6	7.31707
ADAMTS5	0	genome.wustl.edu	37	21	28296442	28296442	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	21	28296442	28296442	T	G	SNP	ADAMTS5	ENST00000284987	human	ensembl	74_37	-1	known	missense	c.2723	p.K908T	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_ADAM_spacer1,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Pept_M12B_ADAM-TS5,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS5	HGNC	ENSG00000154736				89	0	0	84	7	7.69231
TIAM1	0	genome.wustl.edu	37	21	32638350	32638350	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	21	32638350	32638350	T	G	SNP	TIAM1	ENST00000286827	human	ensembl	74_37	-1	known	missense	c.939	p.Q313H	0.995	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Raf-like_ras-bd,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_Pleckstrin_homology,smart_Raf-like_ras-bd,smart_PDZ,smart_DH-domain,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Raf-like_ras-bd,pfscan_DH-domain	-	no_errors	TIAM1	HGNC	ENSG00000156299				116	0	0	80	9	10.1124
CECR1	0	genome.wustl.edu	37	22	17688091	17688091	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	22	17688091	17688091	A	C	SNP	CECR1	ENST00000262607	human	ensembl	74_37	-1	known	missense	c.412	p.F138V	0.968	tigrfam_Ad_deam-like	pfam_A/AMP_deaminase_dom,pfam_A_deaminase_N,tigrfam_Ad_deam-like	-	no_errors	CECR1	HGNC	ENSG00000093072				150	0	0	148	16	9.7561
GNAZ	0	genome.wustl.edu	37	22	23437912	23437912	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	22	23437912	23437912	A	C	SNP	GNAZ	ENST00000248996	human	ensembl	74_37	+1	known	missense	c.30	p.K10N	1.000	pfam_Gprotein_alpha_su	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su,prints_Gprotein_alpha_I	-	no_errors	GNAZ	HGNC	ENSG00000128266				53	0	0	41	4	8.88889
ZNRF3	0	genome.wustl.edu	37	22	29445296	29445296	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	22	29445296	29445296	A	T	SNP	ZNRF3	ENST00000544604	human	ensembl	74_37	+1	known	missense	c.1127	p.N376I	0.983	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	ZNRF3	HGNC	ENSG00000183579				101	0	0	90	11	10.8911
EFCAB6	0	genome.wustl.edu	37	22	44063009	44063009	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	22	44063009	44063009	T	A	SNP	EFCAB6	ENST00000262726	human	ensembl	74_37	-1	known	missense	c.1958	p.K653I	0.030	smart_EF_hand_dom,pfscan_EF_hand_dom	pfam_EF_hand_Ca-bd_contain_6,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	EFCAB6	HGNC	ENSG00000186976				142	0	0	113	18	13.7405
PKDREJ	0	genome.wustl.edu	37	22	46655349	46655349	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	22	46655349	46655349	C	T	SNP	PKDREJ	ENST00000253255	human	ensembl	74_37	-1	known	missense	c.3871	p.G1291R	1.000	pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,smart_PLAT/LH2_dom,pfscan_PLAT/LH2_dom	pfam_PKD1_2_channel,pfam_PKD/REJ-like,pfam_PLAT/LH2_dom,pfam_Ion_trans_dom,superfamily_Lipase_LipOase,smart_GPS_dom,smart_PLAT/LH2_dom,pfscan_PLAT/LH2_dom,pfscan_REJ-like,prints_PKD_2	-	no_errors	PKDREJ	HGNC	ENSG00000130943				159	0	0	132	15	10.2041
ABI3BP	0	genome.wustl.edu	37	3	100595361	100595361	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	3	100595361	100595361	T	C	SNP	ABI3BP	ENST00000284322	human	ensembl	74_37	-1	known	missense	c.761	p.K254R	1.000	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	ABI3BP	HGNC	ENSG00000154175				81	0	0	106	9	7.82609
XRN1	0	genome.wustl.edu	37	3	142048335	142048335	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	3	142048335	142048335	G	A	SNP	XRN1	ENST00000264951	human	ensembl	74_37	-1	known	nonsense	c.4342	p.R1448*	1.000	pirsf_5_3_exoribonuclease_1	pfam_Put_53exo,pirsf_5_3_exoribonuclease_1	-	no_errors	XRN1	HGNC	ENSG00000114127				46	0	0	25	4	13.7931
PLOD2	0	genome.wustl.edu	37	3	145803056	145803056	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	3	145803056	145803056	A	G	SNP	PLOD2	ENST00000282903	human	ensembl	74_37	-1	known	missense	c.1132	p.F378L	0.965	NULL	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	PLOD2	HGNC	ENSG00000152952				39	0	0	43	3	6.52174
C3orf20	0	genome.wustl.edu	37	3	14770025	14770025	+	Silent	SNP	C	C	T			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	3	14770025	14770025	C	T	SNP	C3orf20	ENST00000253697	human	ensembl	74_37	+1	known	silent	c.1770	p.P590	0.000	NULL	NULL	-	no_errors	C3orf20	HGNC	ENSG00000131379				114	0	0	82	6	6.81818
GPR87	0	genome.wustl.edu	37	3	151012123	151012123	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	3	151012123	151012123	G	A	SNP	GPR87	ENST00000260843	human	ensembl	74_37	-1	known	missense	c.911	p.A304V	0.999	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_P2Y13_rcpt,prints_P2Y14_rcpt	-	no_errors	GPR87	HGNC	ENSG00000138271				103	0	0	119	21	15
PIK3CA	0	genome.wustl.edu	37	3	178928079	178928079	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	3	178928079	178928079	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	74_37	+1	known	missense	c.1357	p.E453K	1.000	pfam_PI3K_C2_dom,superfamily_C2_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879				131	0	0	114	15	11.6279
PIK3CA	0	genome.wustl.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	3	178936091	178936091	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	74_37	+1	known	missense	c.1633	p.E545K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879				81	0	0	89	6	6.31579
CCDC39	0	genome.wustl.edu	37	3	180372680	180372680	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	3	180372680	180372680	T	C	SNP	CCDC39	ENST00000442201	human	ensembl	74_37	-1	known	missense	c.800	p.K267R	0.994	NULL	superfamily_Prefoldin,superfamily_tRNA-bd_arm	-	no_errors	CCDC39	HGNC	ENSG00000145075				38	0	0	37	5	11.9048
CCDC39	0	genome.wustl.edu	37	3	180377341	180377341	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	3	180377341	180377341	A	C	SNP	CCDC39	ENST00000442201	human	ensembl	74_37	-1	known	missense	c.637	p.F213V	1.000	NULL	superfamily_Prefoldin,superfamily_tRNA-bd_arm	-	no_errors	CCDC39	HGNC	ENSG00000145075				132	0	0	133	17	11.3333
ETV5	0	genome.wustl.edu	37	3	185798929	185798929	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	3	185798929	185798929	G	A	SNP	ETV5	ENST00000537818	human	ensembl	74_37	-1	known	missense	c.394	p.R132W	1.000	pfam_ETS_PEA3_N	pfam_ETS_PEA3_N,pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	ETV5	HGNC	ENSG00000244405				178	0	0	166	37	18.2266
MUC4	0	genome.wustl.edu	37	3	195512103	195512103	+	Silent	SNP	G	G	A			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	3	195512103	195512103	G	A	SNP	MUC4	ENST00000463781	human	ensembl	74_37	-1	known	silent	c.6348	p.T2116	0.138	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EG-like_dom,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113				14	0	0	10	3	23.0769
ZDHHC19	0	genome.wustl.edu	37	3	195938172	195938172	+	Silent	SNP	C	C	T			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	3	195938172	195938172	C	T	SNP	ZDHHC19	ENST00000296326	human	ensembl	74_37	-1	known	silent	c.15	p.T5	0.029	NULL	pfam_Znf_DHHC_palmitoyltrfase,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC19	HGNC	ENSG00000163958				132	0	0	112	8	6.66667
UBA7	0	genome.wustl.edu	37	3	49850964	49850964	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	3	49850964	49850964	C	T	SNP	UBA7	ENST00000333486	human	ensembl	74_37	-1	known	missense	c.173	p.S58N	0.300	pfam_ThiF_NAD_FAD-bd,superfamily_Molybdenum_cofac_synth_MoeB,prints_UBQ/SUMO-activ_enz_E1-like,tigrfam_UBQ-activ_enz_E1	pfam_ThiF_NAD_FAD-bd,pfam_UBact_repeat,pfam_Ub-activating_enz_e1_C,pfam_Ubiquitin-activating_enzyme,superfamily_Molybdenum_cofac_synth_MoeB,prints_UBQ/SUMO-activ_enz_E1-like,tigrfam_UBQ-activ_enz_E1	-	no_errors	UBA7	HGNC	ENSG00000182179				120	0	0	83	5	5.68182
HYAL2	0	genome.wustl.edu	37	3	50355620	50355620	+	Silent	SNP	A	A	G			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	3	50355620	50355620	A	G	SNP	HYAL2	ENST00000357750	human	ensembl	74_37	-1	known	silent	c.1362	p.A454	0.195	pirsf_Hyaluronidase	pfam_Hyaluronidase,superfamily_Glycoside_hydrolase_SF,pirsf_Hyaluronidase,prints_Hyaluronidase	-	no_errors	HYAL2	HGNC	ENSG00000068001				75	0	0	66	4	5.71429
CACNA2D2	0	genome.wustl.edu	37	3	50416351	50416351	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	3	50416351	50416351	T	A	SNP	CACNA2D2	ENST00000435965	human	ensembl	74_37	-1	known	missense	c.1334	p.N445I	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWA_N,pfam_VDCC_a2/dsu,pfam_Cache_domain,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	CACNA2D2	HGNC	ENSG00000007402				64	0	0	60	11	15.493
LRTM1	0	genome.wustl.edu	37	3	54958865	54958865	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	3	54958865	54958865	A	C	SNP	LRTM1	ENST00000273286	human	ensembl	74_37	-1	known	missense	c.385	p.L129V	0.999	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	LRTM1	HGNC	ENSG00000144771				93	0	0	89	6	6.31579
HTR1F	0	genome.wustl.edu	37	3	88040704	88040704	+	Silent	SNP	A	A	C			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	3	88040704	88040704	A	C	SNP	HTR1F	ENST00000319595	human	ensembl	74_37	+1	known	silent	c.805	p.R269	0.962	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_5HT1F_rcpt,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,prints_5HT1F_rcpt,prints_GPCR_Rhodpsn,prints_5HT_rcpt,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	HTR1F	HGNC	ENSG00000179097				55	0	0	66	8	10.8108
DDIT4L	0	genome.wustl.edu	37	4	101109157	101109157	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	4	101109157	101109157	T	C	SNP	DDIT4L	ENST00000273990	human	ensembl	74_37	-1	known	missense	c.259	p.R87G	1.000	pfam_RTP801-like	pfam_RTP801-like	-	no_errors	DDIT4L	HGNC	ENSG00000145358				163	0	0	128	13	9.21986
ANK2	0	genome.wustl.edu	37	4	114278657	114278657	+	Silent	SNP	T	T	C			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	4	114278657	114278657	T	C	SNP	ANK2	ENST00000357077	human	ensembl	74_37	+1	known	silent	c.8883	p.S2961	0.989	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,smart_Ankyrin_rpt,smart_ZU5,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK2	HGNC	ENSG00000145362				192	0	0	190	25	11.6279
NDST4	0	genome.wustl.edu	37	4	115997948	115997948	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	4	115997948	115997948	A	T	SNP	NDST4	ENST00000264363	human	ensembl	74_37	-1	known	missense	c.245	p.L82H	0.936	pfam_Heparan_SO4_deacetylase	pfam_Heparan_SO4_deacetylase,pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	NDST4	HGNC	ENSG00000138653				134	0	0	118	13	9.92366
FAT4	0	genome.wustl.edu	37	4	126371322	126371322	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	4	126371322	126371322	T	G	SNP	FAT4	ENST00000394329	human	ensembl	74_37	+1	known	missense	c.9151	p.L3051V	0.418	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159				76	0	0	63	8	11.2676
INTU	0	genome.wustl.edu	37	4	128629739	128629739	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	4	128629739	128629739	A	C	SNP	INTU	ENST00000335251	human	ensembl	74_37	+1	known	missense	c.2285	p.K762T	0.995	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	INTU	HGNC	ENSG00000164066				34	0	0	31	4	11.4286
DCLK2	0	genome.wustl.edu	37	4	151023936	151023936	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	4	151023936	151023936	A	G	SNP	DCLK2	ENST00000302176	human	ensembl	74_37	+1	known	missense	c.728	p.K243R	1.000	pfam_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	pfam_Prot_kinase_dom,pfam_Doublecortin_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Doublecortin_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Doublecortin_dom,pfscan_Prot_kinase_dom	-	no_errors	DCLK2	HGNC	ENSG00000170390				57	0	0	37	3	7.5
RBM46	0	genome.wustl.edu	37	4	155720526	155720526	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	4	155720526	155720526	A	C	SNP	RBM46	ENST00000281722	human	ensembl	74_37	+1	known	missense	c.1212	p.K404N	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	-	no_errors	RBM46	HGNC	ENSG00000151962				48	0	0	66	4	5.71429
GUCY1A3	0	genome.wustl.edu	37	4	156634503	156634503	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	4	156634503	156634503	A	C	SNP	GUCY1A3	ENST00000296518	human	ensembl	74_37	+1	known	missense	c.1340	p.K447T	1.000	pfam_Haem_no_assoc-bd,smart_A/G_cyclase	pfam_A/G_cyclase,pfam_Haem_no_assoc-bd,pfam_Heme_NO-bd,superfamily_A/G_cyclase,superfamily_NO_sig/Golgi_transp_ligand-bd,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	GUCY1A3	HGNC	ENSG00000164116				80	0	0	80	12	13.0435
TDO2	0	genome.wustl.edu	37	4	156831278	156831278	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	4	156831278	156831278	G	T	SNP	TDO2	ENST00000536354	human	ensembl	74_37	+1	known	missense	c.533	p.R178I	1.000	pfam_Trp_2_3_dOase	pfam_Trp_2_3_dOase	-	no_errors	TDO2	HGNC	ENSG00000151790				121	0	0	121	15	11.0294
FNIP2	0	genome.wustl.edu	37	4	159790449	159790449	+	Silent	SNP	T	T	C			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	4	159790449	159790449	T	C	SNP	FNIP2	ENST00000379346	human	ensembl	74_37	+1	known	silent	c.2730	p.I910	0.995	NULL	NULL	-	no_errors	FNIP2	HGNC	ENSG00000052795				53	0	0	27	4	12.9032
PRIMPOL	0	genome.wustl.edu	37	4	185593358	185593358	+	Silent	SNP	T	T	G			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	4	185593358	185593358	T	G	SNP	PRIMPOL	ENST00000314970	human	ensembl	74_37	+1	known	silent	c.588	p.A196	0.245	pfam_DNA_primase_S	pfam_DNA_primase_UL52/UL70_Herpvir,pfam_DNA_primase_S	-	no_errors	PRIMPOL	HGNC	ENSG00000164306				165	0	0	141	15	9.61538
CCDC110	0	genome.wustl.edu	37	4	186379713	186379713	+	Silent	SNP	A	A	G			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	4	186379713	186379713	A	G	SNP	CCDC110	ENST00000307588	human	ensembl	74_37	-1	known	silent	c.2028	p.F676	0.314	superfamily_4_helix_cytokine-like_core	superfamily_4_helix_cytokine-like_core	-	no_errors	CCDC110	HGNC	ENSG00000168491				104	0	0	101	9	8.18182
PPARGC1A	0	genome.wustl.edu	37	4	23814390	23814390	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	4	23814390	23814390	T	C	SNP	PPARGC1A	ENST00000264867	human	ensembl	74_37	-1	known	missense	c.1999	p.R667G	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	PPARGC1A	HGNC	ENSG00000109819				177	0	0	174	10	5.43478
EVC2	0	genome.wustl.edu	37	4	5620291	5620291	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	4	5620291	5620291	G	A	SNP	EVC2	ENST00000344408	human	ensembl	74_37	-1	known	nonsense	c.2620	p.R874*	0.988	NULL	pfam_Limbin	-	no_errors	EVC2	HGNC	ENSG00000173040				53	0	0	54	6	10
PTPN13	0	genome.wustl.edu	37	4	87724935	87724935	+	Silent	SNP	G	G	A			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	4	87724935	87724935	G	A	SNP	PTPN13	ENST00000436978	human	ensembl	74_37	+1	known	silent	c.6594	p.T2198	0.010	pirsf_Tyr_Pase_non-rcpt_typ-13	pirsf_Tyr_Pase_non-rcpt_typ-13,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_PDZ,pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_FERM_central,superfamily_PDZ,superfamily_PAZ_dom,smart_KIND,smart_Band_41_domain,smart_PDZ,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam,pfscan_FERM_domain,pfscan_PDZ,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN13	HGNC	ENSG00000163629				169	0	0	175	25	12.5
DRD5	0	genome.wustl.edu	37	4	9784832	9784832	+	Silent	SNP	C	C	T			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	4	9784832	9784832	C	T	SNP	DRD5	ENST00000304374	human	ensembl	74_37	+1	known	silent	c.1179	p.L393	0.988	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Dopamine_D5_rcpt,prints_Dopamine_rcpt	-	no_errors	DRD5	HGNC	ENSG00000169676				74	0	0	56	6	9.67742
PAM	0	genome.wustl.edu	37	5	102295728	102295728	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	5	102295728	102295728	A	G	SNP	PAM	ENST00000304400	human	ensembl	74_37	+1	known	missense	c.1055	p.K352R	0.983	NULL	pfam_NHL_repeat,pfam_Cu2_ascorb_mOase_N,superfamily_PHM/PNGase_F_dom,pfscan_NHL_repeat_subgr,prints_Pep_amidat_mOase	-	no_errors	PAM	HGNC	ENSG00000145730				71	0	0	79	7	8.13953
FBN2	0	genome.wustl.edu	37	5	127855063	127855063	+	Splice_Site	SNP	T	T	G			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	5	127855063	127855063	T	G	SNP	FBN2	ENST00000262464	human	ensembl	74_37	-1	known	splice_site	c.533-2	e5-2	1.000	-	-	-	no_errors	FBN2	HGNC	ENSG00000138829				48	0	0	56	4	6.66667
MYOT	0	genome.wustl.edu	37	5	137222974	137222974	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	5	137222974	137222974	T	A	SNP	MYOT	ENST00000239926	human	ensembl	74_37	+1	known	missense	c.1397	p.L466H	0.992	NULL	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	MYOT	HGNC	ENSG00000120729				113	0	0	100	15	13.0435
PCDHAC2	0	genome.wustl.edu	37	5	140347619	140347619	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	5	140347619	140347619	T	G	SNP	PCDHAC2	ENST00000289269	human	ensembl	74_37	+1	known	missense	c.1268	p.V423G	0.857	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHAC2	HGNC	ENSG00000243232				152	1	0.653595	148	16	9.7561
SH3TC2	0	genome.wustl.edu	37	5	148389903	148389903	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	5	148389903	148389903	A	G	SNP	SH3TC2	ENST00000515425	human	ensembl	74_37	-1	known	missense	c.3257	p.L1086P	0.982	NULL	pfam_SH3_domain,pfam_TPR_1,superfamily_SH3_domain,smart_SH3_domain,smart_TPR_repeat,pfscan_SH3_domain	-	no_errors	SH3TC2	HGNC	ENSG00000169247				95	0	0	78	7	8.23529
ANXA6	0	genome.wustl.edu	37	5	150515865	150515865	+	Silent	SNP	G	G	A			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	5	150515865	150515865	G	A	SNP	ANXA6	ENST00000354546	human	ensembl	74_37	-1	known	silent	c.441	p.I147	0.867	pfam_Annexin_repeat,smart_Annexin_repeat	pfam_Annexin_repeat,smart_Annexin_repeat,prints_Annexin,prints_AnnexinVI,prints_AnnexinIV	-	no_errors	ANXA6	HGNC	ENSG00000197043				89	0	0	66	4	5.71429
IL12B	0	genome.wustl.edu	37	5	158743698	158743698	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	5	158743698	158743698	T	A	SNP	IL12B	ENST00000231228	human	ensembl	74_37	-1	known	missense	c.982	p.S328C	0.822	pirsf_IL-12_beta	pirsf_IL-12_beta,pfam_IL-12_beta_cen-dom,superfamily_Fibronectin_type3,smart_Ig_sub2,prints_IL-12_beta,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	IL12B	HGNC	ENSG00000113302				45	0	0	32	6	15.7895
WWC1	0	genome.wustl.edu	37	5	167824784	167824784	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	5	167824784	167824784	A	C	SNP	WWC1	ENST00000265293	human	ensembl	74_37	+1	known	missense	c.489	p.E163D	1.000	NULL	pfam_WW_dom,superfamily_C2_dom,superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom	-	no_errors	WWC1	HGNC	ENSG00000113645				153	0	0	151	12	7.36196
ZFR	0	genome.wustl.edu	37	5	32400164	32400164	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	5	32400164	32400164	A	G	SNP	ZFR	ENST00000265069	human	ensembl	74_37	-1	known	missense	c.1661	p.L554P	1.000	NULL	pfam_DZF,pfam_Znf_C2H2_jaz,smart_Znf_U1,smart_Znf_C2H2-like,smart_DZF	-	no_errors	ZFR	HGNC	ENSG00000056097				114	0	0	90	12	11.7647
SLC45A2	0	genome.wustl.edu	37	5	33982444	33982444	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	5	33982444	33982444	A	C	SNP	SLC45A2	ENST00000296589	human	ensembl	74_37	-1	known	missense	c.459	p.D153E	0.999	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC45A2	HGNC	ENSG00000164175				57	0	0	53	9	14.5161
UGT3A1	0	genome.wustl.edu	37	5	35991320	35991320	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	5	35991320	35991320	A	C	SNP	UGT3A1	ENST00000274278	human	ensembl	74_37	-1	known	missense	c.23	p.L8R	0.000	NULL	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT3A1	HGNC	ENSG00000145626				137	0	0	117	10	7.87402
GHR	0	genome.wustl.edu	37	5	42718874	42718874	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	5	42718874	42718874	A	G	SNP	GHR	ENST00000230882	human	ensembl	74_37	+1	known	missense	c.1265	p.D422G	1.000	NULL	pfam_Growth/epo_recpt_lig-bind,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	GHR	HGNC	ENSG00000112964				84	0	0	69	13	15.8537
MEF2C	0	genome.wustl.edu	37	5	88119701	88119701	+	RNA	SNP	T	T	G			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	5	88119701	88119701	T	G	SNP	MEF2C	ENST00000509349	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MEF2C	HGNC	ENSG00000081189				108	0	0	104	15	12.605
GPR98	0	genome.wustl.edu	37	5	89990213	89990213	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	5	89990213	89990213	T	G	SNP	GPR98	ENST00000405460	human	ensembl	74_37	+1	known	missense	c.7640	p.L2547R	0.998	NULL	pfam_Calx_beta,pfam_EPTP,pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Gal_Oxase/kelch_b-propeller,smart_Calx_beta,pfscan_EAR,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR98	HGNC	ENSG00000164199				165	1	0.60241	151	13	7.92683
TBC1D32	0	genome.wustl.edu	37	6	121576500	121576500	+	Silent	SNP	A	A	G			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	6	121576500	121576500	A	G	SNP	TBC1D32	ENST00000275159	human	ensembl	74_37	-1	putative	silent	c.1992	p.S664	0.965	NULL	superfamily_Rab-GTPase-TBC_dom	-	no_errors	TBC1D32	HGNC	ENSG00000146350				82	0	0	77	9	10.4651
SERINC1	0	genome.wustl.edu	37	6	122779730	122779730	+	Silent	SNP	A	A	G			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	6	122779730	122779730	A	G	SNP	SERINC1	ENST00000339697	human	ensembl	74_37	-1	known	silent	c.136	p.L46	1.000	pfam_TMS_TDE	pfam_TMS_TDE	-	no_errors	SERINC1	HGNC	ENSG00000111897				179	1	0.555556	146	13	8.1761
FOXQ1	0	genome.wustl.edu	37	6	1313596	1313596	+	Silent	SNP	C	C	T			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	6	1313596	1313596	C	T	SNP	FOXQ1	ENST00000296839	human	ensembl	74_37	+1	known	silent	c.657	p.R219	0.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXQ1	HGNC	ENSG00000164379				39	0	0	17	8	32
SHPRH	0	genome.wustl.edu	37	6	146254276	146254276	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	6	146254276	146254276	T	G	SNP	SHPRH	ENST00000367503	human	ensembl	74_37	-1	known	missense	c.3056	p.K1019T	1.000	superfamily_P-loop_NTPase	pfam_SNF2_N,pfam_Histone_H1/H5_H15,superfamily_P-loop_NTPase,superfamily_Znf_FYVE_PHD,superfamily_WW_dom,smart_Helicase_ATP-bd,smart_Histone_H1/H5_H15,smart_Znf_PHD,smart_Znf_RING,smart_Helicase_C,pfscan_Znf_RING,pfscan_Helicase_C	-	no_errors	SHPRH	HGNC	ENSG00000146414				53	0	0	46	5	9.80392
IP6K3	0	genome.wustl.edu	37	6	33703132	33703132	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	6	33703132	33703132	T	C	SNP	IP6K3	ENST00000293756	human	ensembl	74_37	-1	known	missense	c.122	p.K41R	1.000	NULL	pfam_IPK	-	no_errors	IP6K3	HGNC	ENSG00000161896				52	0	0	50	7	12.2807
UBR2	0	genome.wustl.edu	37	6	42612227	42612227	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	6	42612227	42612227	A	C	SNP	UBR2	ENST00000372899	human	ensembl	74_37	+1	known	missense	c.2237	p.N746T	1.000	NULL	pfam_ClpS_core,pfam_Znf_N-recognin,superfamily_Ribosomal_L7/12_C/ClpS-like,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR2	HGNC	ENSG00000024048				102	0	0	89	10	10.101
DOPEY1	0	genome.wustl.edu	37	6	83845580	83845580	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	6	83845580	83845580	A	C	SNP	DOPEY1	ENST00000349129	human	ensembl	74_37	+1	known	missense	c.3113	p.N1038T	0.998	superfamily_ARM-type_fold	pfam_Dopey_N,superfamily_ARM-type_fold	-	no_errors	DOPEY1	HGNC	ENSG00000083097				58	0	0	44	6	12
MUC17	0	genome.wustl.edu	37	7	100686766	100686766	+	Silent	SNP	T	T	G			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	7	100686766	100686766	T	G	SNP	MUC17	ENST00000306151	human	ensembl	74_37	+1	known	silent	c.12069	p.T4023	0.016	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_EG-like_dom,pfscan_SEA_dom	-	no_errors	MUC17	HGNC	ENSG00000169876				200	0	0	217	16	6.86695
CTTNBP2	0	genome.wustl.edu	37	7	117432071	117432071	+	Silent	SNP	A	A	G			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	7	117432071	117432071	A	G	SNP	CTTNBP2	ENST00000160373	human	ensembl	74_37	-1	known	silent	c.1179	p.D393	0.005	NULL	pfam_Cortactin-binding_p2_N,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	CTTNBP2	HGNC	ENSG00000077063				236	0	0	207	47	18.5039
TSPAN12	0	genome.wustl.edu	37	7	120446622	120446622	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	7	120446622	120446622	A	G	SNP	TSPAN12	ENST00000222747	human	ensembl	74_37	-1	known	missense	c.593	p.L198P	1.000	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	TSPAN12	HGNC	ENSG00000106025				83	0	0	71	6	7.79221
IQUB	0	genome.wustl.edu	37	7	123119949	123119949	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	7	123119949	123119949	A	G	SNP	IQUB	ENST00000324698	human	ensembl	74_37	-1	known	missense	c.1310	p.L437P	1.000	NULL	pfam_Ubiquitin_dom,pfscan_Ubiquitin_supergroup	-	no_errors	IQUB	HGNC	ENSG00000164675				67	0	0	75	13	14.7727
AGR3	0	genome.wustl.edu	37	7	16900136	16900136	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	7	16900136	16900136	C	T	SNP	AGR3	ENST00000310398	human	ensembl	74_37	-1	known	missense	c.439	p.D147N	1.000	superfamily_Thioredoxin-like_fold	superfamily_Thioredoxin-like_fold	-	no_errors	AGR3	HGNC	ENSG00000173467				113	0	0	137	15	9.86842
KBTBD2	0	genome.wustl.edu	37	7	32909212	32909212	+	Silent	SNP	T	T	C			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	7	32909212	32909212	T	C	SNP	KBTBD2	ENST00000304056	human	ensembl	74_37	-1	known	silent	c.1617	p.R539	1.000	pirsf_Kelch-like_gigaxonin	pfam_BTB_POZ,pfam_BACK,pfam_Kelch_1,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KBTBD2	HGNC	ENSG00000170852				156	0	0	118	34	22.3684
FKBP9	0	genome.wustl.edu	37	7	33014900	33014900	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	7	33014900	33014900	T	G	SNP	FKBP9	ENST00000538336	human	ensembl	74_37	+1	known	missense	c.633	p.S211R	0.010	NULL	pfam_PPIase_FKBP_dom,smart_EF_hand_dom,pfscan_EF_hand_dom,pfscan_PPIase_FKBP_dom	-	no_errors	FKBP9	HGNC	ENSG00000122642				122	0	0	91	21	18.75
COL1A2	0	genome.wustl.edu	37	7	94041406	94041406	+	Silent	SNP	C	C	T			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	7	94041406	94041406	C	T	SNP	COL1A2	ENST00000297268	human	ensembl	74_37	+1	known	silent	c.1377	p.I459	1.000	NULL	pfam_Collagen,pfam_Fib_collagen_C,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fib_collagen_C	-	no_errors	COL1A2	HGNC	ENSG00000164692				30	0	0	27	4	12.9032
DLX6	0	genome.wustl.edu	37	7	96639182	96639182	+	Silent	SNP	C	C	T			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	7	96639182	96639182	C	T	SNP	DLX6	ENST00000518156	human	ensembl	74_37	+1	known	silent	c.705	p.S235	0.724	superfamily_Homeodomain-like	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_HTH_motif,prints_Homeobox_metazoa	-	no_errors	DLX6	HGNC	ENSG00000006377				105	0	0	94	10	9.61538
ZNF789	0	genome.wustl.edu	37	7	99077375	99077375	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	7	99077375	99077375	T	C	SNP	ZNF789	ENST00000331410	human	ensembl	74_37	+1	known	missense	c.116	p.V39A	0.945	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF789	HGNC	ENSG00000198556				131	0	0	102	19	15.7025
ZFPM2	0	genome.wustl.edu	37	8	106813442	106813442	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	8	106813442	106813442	T	G	SNP	ZFPM2	ENST00000407775	human	ensembl	74_37	+1	known	missense	c.1132	p.L378V	0.985	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFPM2	HGNC	ENSG00000169946				224	1	0.444444	189	20	9.56938
BLK	0	genome.wustl.edu	37	8	11421550	11421550	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	8	11421550	11421550	A	G	SNP	BLK	ENST00000259089	human	ensembl	74_37	+1	known	missense	c.1451	p.E484G	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,prints_SH3_domain	-	no_errors	BLK	HGNC	ENSG00000136573				22	0	0	16	4	20
AARD	0	genome.wustl.edu	37	8	117954916	117954916	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	8	117954916	117954916	A	C	SNP	AARD	ENST00000378279	human	ensembl	74_37	+1	known	missense	c.444	p.K148N	0.033	NULL	NULL	-	no_errors	AARD	HGNC	ENSG00000205002				77	0	0	92	5	5.15464
DEFB134	0	genome.wustl.edu	37	8	11851601	11851601	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	8	11851601	11851601	T	C	SNP	DEFB134	ENST00000526438	human	ensembl	74_37	-1	known	missense	c.89	p.K30R	0.000	NULL	NULL	-	no_errors	DEFB134	HGNC	ENSG00000205882				99	0	0	99	7	6.60377
FER1L6	0	genome.wustl.edu	37	8	125082784	125082784	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	8	125082784	125082784	A	G	SNP	FER1L6	ENST00000399018	human	ensembl	74_37	+1	known	missense	c.3911	p.K1304R	1.000	NULL	pfam_C2_dom,pfam_Ferlin_B-domain,pfam_FerIin-domain,superfamily_C2_dom,superfamily_ABC1_TM_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	FER1L6	HGNC	ENSG00000214814				146	0	0	120	16	11.7647
GSDMC	0	genome.wustl.edu	37	8	130761760	130761760	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	8	130761760	130761760	A	C	SNP	GSDMC	ENST00000276708	human	ensembl	74_37	-1	known	missense	c.1225	p.F409V	0.061	pfam_Gasdermin	pfam_Gasdermin	-	no_errors	GSDMC	HGNC	ENSG00000147697				95	0	0	94	15	13.7615
TG	0	genome.wustl.edu	37	8	133899716	133899716	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	8	133899716	133899716	A	G	SNP	TG	ENST00000220616	human	ensembl	74_37	+1	known	missense	c.2099	p.N700S	0.002	pfam_Thyroglobulin_1,superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,pirsf_Thyroglobulin,pfscan_Thyroglobulin_1	pfam_Thyroglobulin_1,pfam_CarbesteraseB,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,pirsf_Thyroglobulin,pfscan_Thyroglobulin_1	-	no_errors	TG	HGNC	ENSG00000042832				104	0	0	93	13	12.2642
PUF60	0	genome.wustl.edu	37	8	144899113	144899113	+	Silent	SNP	G	G	A			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	8	144899113	144899113	G	A	SNP	PUF60	ENST00000526683	human	ensembl	74_37	-1	known	silent	c.1347	p.H449	1.000	NULL	pfam_RRM_dom,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom,tigrfam_PolyU-bd	-	no_errors	PUF60	HGNC	ENSG00000179950				14	0	0	16	3	15.7895
MTUS1	0	genome.wustl.edu	37	8	17504590	17504590	+	Splice_Site	SNP	T	T	G			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	8	17504590	17504590	T	G	SNP	MTUS1	ENST00000262102	human	ensembl	74_37	-1	known	splice_site	c.3502-2	e13-2	0.987	-	-	-	no_errors	MTUS1	HGNC	ENSG00000129422				74	0	0	82	7	7.86517
MCM4	0	genome.wustl.edu	37	8	48883436	48883436	+	Silent	SNP	G	G	A			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	8	48883436	48883436	G	A	SNP	MCM4	ENST00000262105	human	ensembl	74_37	+1	known	silent	c.1800	p.K600	1.000	pfam_MCM_DNA-dep_ATPase,pfam_Mg_chelatse_chII,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_P-loop_NTPase,smart_MCM_DNA-dep_ATPase,pfscan_MCM_DNA-dep_ATPase,prints_MCM_DNA-dep_ATPase	pfam_MCM_DNA-dep_ATPase,pfam_Mg_chelatse_chII,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_NA-bd_OB-fold,superfamily_P-loop_NTPase,smart_MCM_DNA-dep_ATPase,pfscan_MCM_DNA-dep_ATPase,prints_MCM_4,prints_MCM_DNA-dep_ATPase	-	no_errors	MCM4	HGNC	ENSG00000104738				89	0	0	83	13	13.5417
PREX2	0	genome.wustl.edu	37	8	68942747	68942747	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	8	68942747	68942747	A	G	SNP	PREX2	ENST00000288368	human	ensembl	74_37	+1	known	missense	c.559	p.T187A	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_DEP_dom,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX2	HGNC	ENSG00000046889				52	0	0	47	4	7.84314
ZFHX4	0	genome.wustl.edu	37	8	77764117	77764117	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	8	77764117	77764117	A	G	SNP	ZFHX4	ENST00000521891	human	ensembl	74_37	+1	known	missense	c.4960	p.S1654G	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656				87	0	0	72	5	6.49351
FOXE1	0	genome.wustl.edu	37	9	100616468	100616468	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	9	100616468	100616468	G	A	SNP	FOXE1	ENST00000375123	human	ensembl	74_37	+1	known	missense	c.272	p.R91H	1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXE1	HGNC	ENSG00000178919				85	0	0	76	7	8.43373
LPPR1	0	genome.wustl.edu	37	9	104075105	104075105	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	9	104075105	104075105	C	T	SNP	LPPR1	ENST00000374874	human	ensembl	74_37	+1	known	missense	c.662	p.T221M	1.000	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	-	no_errors	LPPR1	Uniprot_gn	ENSG00000148123				102	0	0	97	11	10.1852
ZNF462	0	genome.wustl.edu	37	9	109736459	109736459	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	9	109736459	109736459	T	C	SNP	ZNF462	ENST00000457913	human	ensembl	74_37	+1	known	missense	c.6917	p.V2306A	0.999	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF462	HGNC	ENSG00000148143				392	0	0	362	44	10.8374
OR2K2	0	genome.wustl.edu	37	9	114090461	114090461	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	9	114090461	114090461	A	C	SNP	OR2K2	ENST00000374428	human	ensembl	74_37	-1	known	missense	c.340	p.L114V	0.982	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2K2	HGNC	ENSG00000171133				56	0	0	51	4	7.27273
TLR4	0	genome.wustl.edu	37	9	120475898	120475898	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	9	120475898	120475898	T	G	SNP	TLR4	ENST00000355622	human	ensembl	74_37	+1	known	missense	c.1492	p.L498V	0.773	pirsf_Toll-like_receptor,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pirsf_Toll-like_receptor,pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR4	HGNC	ENSG00000136869				116	0	0	90	9	9.09091
SMARCA2	0	genome.wustl.edu	37	9	2123719	2123719	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	9	2123719	2123719	C	T	SNP	SMARCA2	ENST00000349721	human	ensembl	74_37	+1	known	missense	c.3763	p.R1255W	1.000	superfamily_P-loop_NTPase	pfam_SNF2_N,pfam_Bromodomain,pfam_BRK_domain,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,pfam_Gln-Leu-Gln_QLQ,superfamily_P-loop_NTPase,superfamily_Bromodomain,superfamily_RNaseH-like_dom,smart_Gln-Leu-Gln_QLQ,smart_HAS_subgr,smart_BRK_domain,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Bromodomain,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	SMARCA2	HGNC	ENSG00000080503				64	0	0	69	7	9.21053
RNF38	0	genome.wustl.edu	37	9	36357894	36357894	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	9	36357894	36357894	C	T	SNP	RNF38	ENST00000259605	human	ensembl	74_37	-1	known	missense	c.616	p.A206T	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF38	HGNC	ENSG00000137075				113	1	0.877193	104	8	7.14286
TRPM3	0	genome.wustl.edu	37	9	73240173	73240173	+	Silent	SNP	A	A	C			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	9	73240173	73240173	A	C	SNP	TRPM3	ENST00000423814	human	ensembl	74_37	-1	known	silent	c.1788	p.A596	0.178	NULL	pfam_Ion_trans_dom	-	no_errors	TRPM3	HGNC	ENSG00000083067				53	0	0	41	5	10.8696
TRPC5	0	genome.wustl.edu	37	X	111022219	111022219	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	X	111022219	111022219	A	C	SNP	TRPC5	ENST00000262839	human	ensembl	74_37	-1	known	missense	c.2226	p.N742K	1.000	tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_TRPC5_channel,prints_TRPC_channel,tigrfam_TRP_channel	-	no_errors	TRPC5	HGNC	ENSG00000072315				35	0	0	27	13	32.5
USP26	0	genome.wustl.edu	37	X	132160633	132160633	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	X	132160633	132160633	A	C	SNP	USP26	ENST00000370832	human	ensembl	74_37	-1	known	missense	c.1616	p.V539G	0.034	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP26	HGNC	ENSG00000134588				99	0	0	127	7	5.22388
ARHGEF6	0	genome.wustl.edu	37	X	135825841	135825841	+	Silent	SNP	G	G	A			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	X	135825841	135825841	G	A	SNP	ARHGEF6	ENST00000250617	human	ensembl	74_37	-1	known	silent	c.564	p.Y188	0.045	pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain	pfam_DH-domain,pfam_SH3_2,pfam_SH3_domain,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_DH-domain,superfamily_CH-domain,superfamily_SH3_domain,smart_CH-domain,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_CH-domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain,prints_SH3_domain,prints_SM22_calponin	-	no_errors	ARHGEF6	HGNC	ENSG00000129675				109	1	0.909091	88	16	15.3846
L1CAM	0	genome.wustl.edu	37	X	153134383	153134383	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	X	153134383	153134383	G	A	SNP	L1CAM	ENST00000543994	human	ensembl	74_37	-1	known	missense	c.1298	p.A433V	0.000	pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	L1CAM	HGNC	ENSG00000198910				79	0	0	64	4	5.88235
ARHGAP4	0	genome.wustl.edu	37	X	153176006	153176006	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	X	153176006	153176006	C	T	SNP	ARHGAP4	ENST00000350060	human	ensembl	74_37	-1	known	missense	c.1876	p.A626T	0.000	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_FCH_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,smart_FCH_dom,smart_RhoGAP_dom,smart_SH3_domain,pfscan_FCH_dom,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	ARHGAP4	HGNC	ENSG00000089820				22	0	0	25	7	21.875
REPS2	0	genome.wustl.edu	37	X	17080602	17080602	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	X	17080602	17080602	T	C	SNP	REPS2	ENST00000357277	human	ensembl	74_37	+1	known	missense	c.1156	p.Y386H	1.000	NULL	smart_EPS15_homology,pfscan_EF_hand_dom,pfscan_EPS15_homology	-	no_errors	REPS2	HGNC	ENSG00000169891				52	0	0	39	21	35
MAOB	0	genome.wustl.edu	37	X	43662581	43662581	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	X	43662581	43662581	T	G	SNP	MAOB	ENST00000378069	human	ensembl	74_37	-1	known	missense	c.350	p.N117T	1.000	pfam_Amino_oxidase	pfam_Amino_oxidase,pfam_FAD-dep_OxRdtase,pfam_FAD_bind_dom,pfam_Pyr_OxRdtase_NAD-bd_dom,pfam_mOase_FAD-bd,prints_Flavin_amine_oxidase	-	no_errors	MAOB	HGNC	ENSG00000069535				48	0	0	45	20	30.7692
ZNF630	0	genome.wustl.edu	37	X	47918755	47918755	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	X	47918755	47918755	T	G	SNP	ZNF630	ENST00000409324	human	ensembl	74_37	-1	known	missense	c.1076	p.K359T	0.001	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF630	HGNC	ENSG00000221994				45	0	0	37	18	32.7273
KIAA2022	0	genome.wustl.edu	37	X	73961294	73961294	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	X	73961294	73961294	T	G	SNP	KIAA2022	ENST00000055682	human	ensembl	74_37	-1	known	missense	c.3098	p.K1033T	1.000	NULL	NULL	-	no_errors	KIAA2022	HGNC	ENSG00000050030				62	0	0	80	5	5.88235
RNA5-8SP6	0	genome.wustl.edu	37	Y	10037843	10037843	+	RNA	SNP	C	C	T			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	Y	10037843	10037843	C	T	SNP	RNA5-8SP6	ENST00000515896	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RNA5-8SP6	HGNC	ENSG00000251705				16	0	0	13	4	23.5294
CDK12	0	genome.wustl.edu	37	17	37619151	37619152	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	17	37619151	37619152	-	T	INS	CDK12	ENST00000447079	human	ensembl	74_37	+1	known	frame_shift_ins	c.827_828	p.P277fs	0.998:0.998	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDK12	HGNC	ENSG00000167258				139	0	0	128	20	13.5135
OR10H1	0	genome.wustl.edu	37	19	15918794	15918795	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	19	15918794	15918795	AG	-	DEL	OR10H1	ENST00000334920	human	ensembl	74_37	-1	known	frame_shift_del	c.54_53	p.S18fs	0.003:0.738	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10H1	HGNC	ENSG00000186723				295	0	0	219	20	8.3682
PTPRT	0	genome.wustl.edu	37	20	40739009	40739009	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	20	40739009	40739009	T	-	DEL	PTPRT	ENST00000373198	human	ensembl	74_37	-1	known	frame_shift_del	c.3275	p.N1092fs	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRT	HGNC	ENSG00000196090				75	0	0	70	14	16.6667
TPD52L2	0	genome.wustl.edu	37	20	62505127	62505128	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	20	62505127	62505128	AG	-	DEL	TPD52L2	ENST00000217121	human	ensembl	74_37	+1	known	frame_shift_del	c.272_273	p.N92fs	1.000:1.000	pfam_TPD52	pfam_TPD52	-	no_errors	TPD52L2	HGNC	ENSG00000101150				35	0	0	45	7	13.4615
TAF9B	0	genome.wustl.edu	37	X	77387203	77387205	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-BR-6706-01A-11D-1882-08	TCGA-BR-6706-10A-01D-1882-08	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41ef4abd-e2b5-477c-9853-ac828578ba3f	85807506-a71e-46b6-b09d-26e8ec73ac1d	X	77387203	77387205	AAG	-	DEL	TAF9B	ENST00000341864	human	ensembl	74_37	-1	known	in_frame_del	c.660_658	p.L220in_frame_del	1.000:1.000:1.000	NULL	pfam_TFIID-31,superfamily_Histone-fold	-	no_errors	TAF9B	HGNC	ENSG00000187325				154	0	0	147	20	11.976
