Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
EDEM3	0	genome.wustl.edu	37	1	184677466	184677466	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6709-01A-11D-1882-08	TCGA-BR-6709-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2971a8ef-a8bf-4f6b-9f8d-c3c15037a46e	9adfad1c-29d2-4781-9e71-8b756b46538e	1	184677466	184677466	T	C	SNP	EDEM3	ENST00000318130	human	ensembl	74_37	-1	known	missense	c.1858	p.I620V	0.948	NULL	pfam_Glyco_hydro_47,pfam_Protease-assoc_domain,superfamily_Glyco_hydro_47,prints_Glyco_hydro_47	-	no_errors	EDEM3	HGNC	ENSG00000116406				50	0	0	54	6	10
HMCN1	0	genome.wustl.edu	37	1	186024533	186024533	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6709-01A-11D-1882-08	TCGA-BR-6709-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2971a8ef-a8bf-4f6b-9f8d-c3c15037a46e	9adfad1c-29d2-4781-9e71-8b756b46538e	1	186024533	186024533	A	C	SNP	HMCN1	ENST00000271588	human	ensembl	74_37	+1	known	missense	c.6871	p.T2291P	0.057	pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd_dom,pfam_Thrombospondin_1_rpt,superfamily_GFP,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom	-	no_errors	HMCN1	HGNC	ENSG00000143341				67	0	0	60	15	20
HSPG2	0	genome.wustl.edu	37	1	22166044	22166044	+	Splice_Site	SNP	C	C	T			TCGA-BR-6709-01A-11D-1882-08	TCGA-BR-6709-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2971a8ef-a8bf-4f6b-9f8d-c3c15037a46e	9adfad1c-29d2-4781-9e71-8b756b46538e	1	22166044	22166044	C	T	SNP	HSPG2	ENST00000374695	human	ensembl	74_37	-1	known	splice_site	c.9710-1	e73-1	1.000	-	-	-	no_errors	HSPG2	HGNC	ENSG00000142798				36	0	0	27	3	10
PTCH2	0	genome.wustl.edu	37	1	45293195	45293195	+	Silent	SNP	G	G	A			TCGA-BR-6709-01A-11D-1882-08	TCGA-BR-6709-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2971a8ef-a8bf-4f6b-9f8d-c3c15037a46e	9adfad1c-29d2-4781-9e71-8b756b46538e	1	45293195	45293195	G	A	SNP	PTCH2	ENST00000372192	human	ensembl	74_37	-1	known	silent	c.2250	p.A750	1.000	pfam_Patched,tigrfam_TM_rcpt_patched	pfam_Patched,pfscan_SSD,tigrfam_TM_rcpt_patched	-	no_errors	PTCH2	HGNC	ENSG00000117425				70	0	0	41	11	21.1538
C1orf173	0	genome.wustl.edu	37	1	75038941	75038941	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6709-01A-11D-1882-08	TCGA-BR-6709-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2971a8ef-a8bf-4f6b-9f8d-c3c15037a46e	9adfad1c-29d2-4781-9e71-8b756b46538e	1	75038941	75038941	T	C	SNP	C1orf173	ENST00000326665	human	ensembl	74_37	-1	known	missense	c.2453	p.Q818R	0.000	NULL	NULL	-	no_errors	C1orf173	HGNC	ENSG00000178965				145	0	0	126	19	13.1034
OR4X1	0	genome.wustl.edu	37	11	48285907	48285907	+	Silent	SNP	G	G	T			TCGA-BR-6709-01A-11D-1882-08	TCGA-BR-6709-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2971a8ef-a8bf-4f6b-9f8d-c3c15037a46e	9adfad1c-29d2-4781-9e71-8b756b46538e	11	48285907	48285907	G	T	SNP	OR4X1	ENST00000320048	human	ensembl	74_37	+1	known	silent	c.495	p.P165	0.011	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4X1	HGNC	ENSG00000176567				78	0	0	57	11	16.1765
CTSW	0	genome.wustl.edu	37	11	65648922	65648922	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6709-01A-11D-1882-08	TCGA-BR-6709-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2971a8ef-a8bf-4f6b-9f8d-c3c15037a46e	9adfad1c-29d2-4781-9e71-8b756b46538e	11	65648922	65648922	G	A	SNP	CTSW	ENST00000307886	human	ensembl	74_37	+1	known	missense	c.217	p.A73T	0.993	pfam_Prot_inhib_I29,smart_Prot_inhib_I29	pfam_Peptidase_C1A_C,pfam_Prot_inhib_I29,smart_Prot_inhib_I29,smart_Peptidase_C1A_C,prints_Peptidase_C1A_C	-	no_errors	CTSW	HGNC	ENSG00000172543				617	0	0	505	598	54.2158
CTSW	0	genome.wustl.edu	37	11	65649650	65649650	+	Silent	SNP	G	G	A			TCGA-BR-6709-01A-11D-1882-08	TCGA-BR-6709-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2971a8ef-a8bf-4f6b-9f8d-c3c15037a46e	9adfad1c-29d2-4781-9e71-8b756b46538e	11	65649650	65649650	G	A	SNP	CTSW	ENST00000307886	human	ensembl	74_37	+1	known	silent	c.291	p.E97	0.994	pfam_Prot_inhib_I29,smart_Prot_inhib_I29	pfam_Peptidase_C1A_C,pfam_Prot_inhib_I29,smart_Prot_inhib_I29,smart_Peptidase_C1A_C,prints_Peptidase_C1A_C	-	no_errors	CTSW	HGNC	ENSG00000172543				71	0	0	82	60	42.2535
CTSW	0	genome.wustl.edu	37	11	65649723	65649723	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6709-01A-11D-1882-08	TCGA-BR-6709-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2971a8ef-a8bf-4f6b-9f8d-c3c15037a46e	9adfad1c-29d2-4781-9e71-8b756b46538e	11	65649723	65649723	G	A	SNP	CTSW	ENST00000307886	human	ensembl	74_37	+1	known	missense	c.364	p.E122K	0.001	NULL	pfam_Peptidase_C1A_C,pfam_Prot_inhib_I29,smart_Prot_inhib_I29,smart_Peptidase_C1A_C,prints_Peptidase_C1A_C	-	no_errors	CTSW	HGNC	ENSG00000172543				110	0	0	109	79	42.0213
EED	0	genome.wustl.edu	37	11	85988118	85988118	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6709-01A-11D-1882-08	TCGA-BR-6709-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2971a8ef-a8bf-4f6b-9f8d-c3c15037a46e	9adfad1c-29d2-4781-9e71-8b756b46538e	11	85988118	85988118	C	T	SNP	EED	ENST00000263360	human	ensembl	74_37	+1	known	nonsense	c.1063	p.R355*	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EED	HGNC	ENSG00000074266				109	0	0	82	6	6.81818
CACNA1C	0	genome.wustl.edu	37	12	2566826	2566826	+	Silent	SNP	G	G	A			TCGA-BR-6709-01A-11D-1882-08	TCGA-BR-6709-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2971a8ef-a8bf-4f6b-9f8d-c3c15037a46e	9adfad1c-29d2-4781-9e71-8b756b46538e	12	2566826	2566826	G	A	SNP	CACNA1C	ENST00000399634	human	ensembl	74_37	+1	known	silent	c.711	p.R237	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCC_L_a1csu,prints_VDCCAlpha1,prints_VDCC_L_a1su	-	no_errors	CACNA1C	HGNC	ENSG00000151067				381	0	0	1396	102	6.80908
SYT10	0	genome.wustl.edu	37	12	33535294	33535294	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6709-01A-11D-1882-08	TCGA-BR-6709-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2971a8ef-a8bf-4f6b-9f8d-c3c15037a46e	9adfad1c-29d2-4781-9e71-8b756b46538e	12	33535294	33535294	C	T	SNP	SYT10	ENST00000228567	human	ensembl	74_37	-1	known	missense	c.1360	p.D454N	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom,prints_Synaptotagmin,prints_C2_dom	-	no_errors	SYT10	HGNC	ENSG00000110975				79	0	0	302	28	8.48485
CCDC65	0	genome.wustl.edu	37	12	49315051	49315051	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6709-01A-11D-1882-08	TCGA-BR-6709-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2971a8ef-a8bf-4f6b-9f8d-c3c15037a46e	9adfad1c-29d2-4781-9e71-8b756b46538e	12	49315051	49315051	A	G	SNP	CCDC65	ENST00000266984	human	ensembl	74_37	+1	known	missense	c.1280	p.D427G	0.010	NULL	NULL	-	no_errors	CCDC65	HGNC	ENSG00000139537				67	0	0	67	12	15.1899
DCLK1	0	genome.wustl.edu	37	13	36445384	36445384	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6709-01A-11D-1882-08	TCGA-BR-6709-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2971a8ef-a8bf-4f6b-9f8d-c3c15037a46e	9adfad1c-29d2-4781-9e71-8b756b46538e	13	36445384	36445384	T	C	SNP	DCLK1	ENST00000360631	human	ensembl	74_37	-1	known	missense	c.917	p.K306R	1.000	NULL	pfam_Prot_kinase_dom,pfam_Doublecortin_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Doublecortin_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Doublecortin_dom,pfscan_Prot_kinase_dom	-	no_errors	DCLK1	HGNC	ENSG00000133083				170	0	0	103	30	22.5564
CTAGE5	0	genome.wustl.edu	37	14	39818102	39818102	+	Silent	SNP	T	T	C			TCGA-BR-6709-01A-11D-1882-08	TCGA-BR-6709-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2971a8ef-a8bf-4f6b-9f8d-c3c15037a46e	9adfad1c-29d2-4781-9e71-8b756b46538e	14	39818102	39818102	T	C	SNP	CTAGE5	ENST00000396158	human	ensembl	74_37	+1	known	silent	c.2184	p.P728	1.000	NULL	NULL	-	no_errors	CTAGE5	HGNC	ENSG00000150527				232	2	0.854701	133	36	21.3018
PPP1R36	0	genome.wustl.edu	37	14	65054868	65054868	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6709-01A-11D-1882-08	TCGA-BR-6709-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2971a8ef-a8bf-4f6b-9f8d-c3c15037a46e	9adfad1c-29d2-4781-9e71-8b756b46538e	14	65054868	65054868	C	T	SNP	PPP1R36	ENST00000298705	human	ensembl	74_37	+1	known	missense	c.937	p.R313C	1.000	NULL	NULL	-	no_errors	PPP1R36	HGNC	ENSG00000165807				167	1	0.595238	133	45	25.2809
PPP4R4	0	genome.wustl.edu	37	14	94718194	94718194	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6709-01A-11D-1882-08	TCGA-BR-6709-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2971a8ef-a8bf-4f6b-9f8d-c3c15037a46e	9adfad1c-29d2-4781-9e71-8b756b46538e	14	94718194	94718194	C	T	SNP	PPP4R4	ENST00000304338	human	ensembl	74_37	+1	known	missense	c.1826	p.P609L	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	PPP4R4	HGNC	ENSG00000119698				59	0	0	51	3	5.55556
ADAMTS17	0	genome.wustl.edu	37	15	100514743	100514743	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6709-01A-11D-1882-08	TCGA-BR-6709-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2971a8ef-a8bf-4f6b-9f8d-c3c15037a46e	9adfad1c-29d2-4781-9e71-8b756b46538e	15	100514743	100514743	C	T	SNP	ADAMTS17	ENST00000268070	human	ensembl	74_37	-1	known	missense	c.3152	p.R1051Q	1.000	pfam_PLAC,pfscan_PLAC	pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS17	HGNC	ENSG00000140470				117	0	0	94	13	12.1495
UNC13C	0	genome.wustl.edu	37	15	54586215	54586215	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6709-01A-11D-1882-08	TCGA-BR-6709-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2971a8ef-a8bf-4f6b-9f8d-c3c15037a46e	9adfad1c-29d2-4781-9e71-8b756b46538e	15	54586215	54586215	T	A	SNP	UNC13C	ENST00000260323	human	ensembl	74_37	+1	known	missense	c.3941	p.V1314E	1.000	superfamily_C2_dom,smart_C2_dom	pfam_Munc13_subgr_dom-2,pfam_Ca-dep_secretion_activator,pfam_C2_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_dom,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13C	HGNC	ENSG00000137766				250	0	0	238	14	5.55556
PAFAH1B1	0	genome.wustl.edu	37	17	2576045	2576045	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6709-01A-11D-1882-08	TCGA-BR-6709-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2971a8ef-a8bf-4f6b-9f8d-c3c15037a46e	9adfad1c-29d2-4781-9e71-8b756b46538e	17	2576045	2576045	A	G	SNP	PAFAH1B1	ENST00000397195	human	ensembl	74_37	+1	known	missense	c.665	p.Q222R	1.000	superfamily_WD40_repeat_dom,pirsf_Dynein_regulator_LIS1,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_LisH_dimerisation_subgr,superfamily_WD40_repeat_dom,smart_LisH_dimerisation,smart_WD40_repeat,pirsf_Dynein_regulator_LIS1,pfscan_LisH_dimerisation,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	PAFAH1B1	HGNC	ENSG00000007168				33	0	0	16	6	27.2727
DCC	0	genome.wustl.edu	37	18	50731695	50731695	+	Nonsense_Mutation	SNP	C	C	G			TCGA-BR-6709-01A-11D-1882-08	TCGA-BR-6709-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2971a8ef-a8bf-4f6b-9f8d-c3c15037a46e	9adfad1c-29d2-4781-9e71-8b756b46538e	18	50731695	50731695	C	G	SNP	DCC	ENST00000442544	human	ensembl	74_37	+1	known	nonsense	c.1683	p.Y561*	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Neogenin_C,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	DCC	HGNC	ENSG00000187323				219	0	0	177	39	18.0556
DSEL	0	genome.wustl.edu	37	18	65179389	65179389	+	Silent	SNP	C	C	T			TCGA-BR-6709-01A-11D-1882-08	TCGA-BR-6709-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2971a8ef-a8bf-4f6b-9f8d-c3c15037a46e	9adfad1c-29d2-4781-9e71-8b756b46538e	18	65179389	65179389	C	T	SNP	DSEL	ENST00000310045	human	ensembl	74_37	-1	known	silent	c.2487	p.V829	0.984	NULL	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,superfamily_Chondroitin_lyas	-	no_errors	DSEL	HGNC	ENSG00000171451				190	0	0	149	8	5.09554
LDLR	0	genome.wustl.edu	37	19	11218068	11218068	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6709-01A-11D-1882-08	TCGA-BR-6709-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2971a8ef-a8bf-4f6b-9f8d-c3c15037a46e	9adfad1c-29d2-4781-9e71-8b756b46538e	19	11218068	11218068	T	G	SNP	LDLR	ENST00000558518	human	ensembl	74_37	+1	known	missense	c.818	p.V273G	1.000	superfamily_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EGF-like_Ca-bd_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LDLR	HGNC	ENSG00000130164				67	0	0	51	4	7.27273
ZNF559	0	genome.wustl.edu	37	19	9453327	9453327	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6709-01A-11D-1882-08	TCGA-BR-6709-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2971a8ef-a8bf-4f6b-9f8d-c3c15037a46e	9adfad1c-29d2-4781-9e71-8b756b46538e	19	9453327	9453327	G	T	SNP	ZNF559	ENST00000393883	human	ensembl	74_37	+1	known	missense	c.1200	p.M400I	0.002	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF559	HGNC	ENSG00000188321				73	0	0	67	7	9.45946
ZNF559	0	genome.wustl.edu	37	19	9453328	9453328	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6709-01A-11D-1882-08	TCGA-BR-6709-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2971a8ef-a8bf-4f6b-9f8d-c3c15037a46e	9adfad1c-29d2-4781-9e71-8b756b46538e	19	9453328	9453328	C	T	SNP	ZNF559	ENST00000393883	human	ensembl	74_37	+1	known	nonsense	c.1201	p.Q401*	0.001	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF559	HGNC	ENSG00000188321				72	0	0	67	7	9.45946
TTN	0	genome.wustl.edu	37	2	179463648	179463648	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6709-01A-11D-1882-08	TCGA-BR-6709-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2971a8ef-a8bf-4f6b-9f8d-c3c15037a46e	9adfad1c-29d2-4781-9e71-8b756b46538e	2	179463648	179463648	C	G	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.49085	p.R16362T	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				105	0	0	91	19	17.2727
KCNK3	0	genome.wustl.edu	37	2	26950984	26950984	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6709-01A-11D-1882-08	TCGA-BR-6709-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2971a8ef-a8bf-4f6b-9f8d-c3c15037a46e	9adfad1c-29d2-4781-9e71-8b756b46538e	2	26950984	26950984	C	T	SNP	KCNK3	ENST00000302909	human	ensembl	74_37	+1	known	missense	c.733	p.R245C	1.000	pfam_2pore_dom_K_chnl_dom,pirsf_2pore_dom_K_chnl_TASK	pfam_2pore_dom_K_chnl_dom,pirsf_2pore_dom_K_chnl_TASK,prints_2pore_dom_K_chnl_TASK,prints_KCNK3,prints_2pore_dom_K_chnl	-	no_errors	KCNK3	HGNC	ENSG00000171303				17	0	0	16	4	20
POGLUT1	0	genome.wustl.edu	37	3	119207810	119207810	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6709-01A-11D-1882-08	TCGA-BR-6709-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2971a8ef-a8bf-4f6b-9f8d-c3c15037a46e	9adfad1c-29d2-4781-9e71-8b756b46538e	3	119207810	119207810	A	G	SNP	POGLUT1	ENST00000295588	human	ensembl	74_37	+1	known	missense	c.773	p.H258R	1.000	pfam_LipoPS_modifying,smart_LipoPS_modifying	pfam_LipoPS_modifying,smart_LipoPS_modifying	-	no_errors	POGLUT1	HGNC	ENSG00000163389				53	0	0	56	14	20
ZBBX	0	genome.wustl.edu	37	3	167016191	167016191	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6709-01A-11D-1882-08	TCGA-BR-6709-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2971a8ef-a8bf-4f6b-9f8d-c3c15037a46e	9adfad1c-29d2-4781-9e71-8b756b46538e	3	167016191	167016191	A	C	SNP	ZBBX	ENST00000307529	human	ensembl	74_37	-1	known	missense	c.1781	p.L594R	1.000	NULL	pfam_Znf_B-box	-	no_errors	ZBBX	HGNC	ENSG00000169064				147	0	0	112	19	14.5038
LIMD1	0	genome.wustl.edu	37	3	45637696	45637696	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6709-01A-11D-1882-08	TCGA-BR-6709-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2971a8ef-a8bf-4f6b-9f8d-c3c15037a46e	9adfad1c-29d2-4781-9e71-8b756b46538e	3	45637696	45637696	C	T	SNP	LIMD1	ENST00000273317	human	ensembl	74_37	+1	known	missense	c.1325	p.P442L	0.439	NULL	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	LIMD1	HGNC	ENSG00000144791				46	0	0	36	4	10
GNAI2	0	genome.wustl.edu	37	3	50294236	50294236	+	Silent	SNP	C	C	T			TCGA-BR-6709-01A-11D-1882-08	TCGA-BR-6709-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2971a8ef-a8bf-4f6b-9f8d-c3c15037a46e	9adfad1c-29d2-4781-9e71-8b756b46538e	3	50294236	50294236	C	T	SNP	GNAI2	ENST00000313601	human	ensembl	74_37	+1	known	silent	c.675	p.C225	0.033	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su,prints_Gprotein_alpha_I,prints_Fungi_Gprotein_alpha	-	no_errors	GNAI2	HGNC	ENSG00000114353				152	0	0	120	8	6.25
DCHS2	0	genome.wustl.edu	37	4	155158023	155158023	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6709-01A-11D-1882-08	TCGA-BR-6709-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2971a8ef-a8bf-4f6b-9f8d-c3c15037a46e	9adfad1c-29d2-4781-9e71-8b756b46538e	4	155158023	155158023	G	A	SNP	DCHS2	ENST00000357232	human	ensembl	74_37	-1	known	missense	c.6416	p.S2139L	0.013	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_HTH_CenpB_DNA-bd_dom,superfamily_Cadherin-like,superfamily_Homeodomain-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	DCHS2	HGNC	ENSG00000197410				122	0	0	103	10	8.84956
SKP1	0	genome.wustl.edu	37	5	133502891	133502891	+	Silent	SNP	T	T	C			TCGA-BR-6709-01A-11D-1882-08	TCGA-BR-6709-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2971a8ef-a8bf-4f6b-9f8d-c3c15037a46e	9adfad1c-29d2-4781-9e71-8b756b46538e	5	133502891	133502891	T	C	SNP	SKP1	ENST00000353411	human	ensembl	74_37	-1	known	silent	c.141	p.L47	0.995	pfam_Skp1_comp_POZ,superfamily_BTB/POZ_fold,smart_Skp1_comp,pirsf_E3_ubiquit_lig_SCF_Skp	pfam_Skp1_comp_dimer,pfam_Skp1_comp_POZ,superfamily_Skp1_comp_dimer,superfamily_BTB/POZ_fold,smart_Skp1_comp,pirsf_E3_ubiquit_lig_SCF_Skp	-	no_errors	SKP1	HGNC	ENSG00000113558				75	0	0	77	19	19.7917
HIVEP2	0	genome.wustl.edu	37	6	143091386	143091386	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6709-01A-11D-1882-08	TCGA-BR-6709-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2971a8ef-a8bf-4f6b-9f8d-c3c15037a46e	9adfad1c-29d2-4781-9e71-8b756b46538e	6	143091386	143091386	C	A	SNP	HIVEP2	ENST00000012134	human	ensembl	74_37	-1	known	missense	c.4490	p.R1497L	0.984	NULL	pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP2	HGNC	ENSG00000010818				114	0	0	114	19	14.2857
DEF6	0	genome.wustl.edu	37	6	35280239	35280239	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6709-01A-11D-1882-08	TCGA-BR-6709-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2971a8ef-a8bf-4f6b-9f8d-c3c15037a46e	9adfad1c-29d2-4781-9e71-8b756b46538e	6	35280239	35280239	G	A	SNP	DEF6	ENST00000316637	human	ensembl	74_37	+1	known	missense	c.584	p.R195Q	1.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DEF6	HGNC	ENSG00000023892				90	0	0	77	16	17.2043
RINT1	0	genome.wustl.edu	37	7	105177188	105177188	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6709-01A-11D-1882-08	TCGA-BR-6709-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2971a8ef-a8bf-4f6b-9f8d-c3c15037a46e	9adfad1c-29d2-4781-9e71-8b756b46538e	7	105177188	105177188	G	C	SNP	RINT1	ENST00000257700	human	ensembl	74_37	+1	known	missense	c.265	p.E89Q	1.000	NULL	pfam_RINT1_TIP1	-	no_errors	RINT1	HGNC	ENSG00000135249				39	0	0	36	3	7.69231
SSPO	0	genome.wustl.edu	37	7	149489038	149489038	+	RNA	SNP	G	G	A			TCGA-BR-6709-01A-11D-1882-08	TCGA-BR-6709-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2971a8ef-a8bf-4f6b-9f8d-c3c15037a46e	9adfad1c-29d2-4781-9e71-8b756b46538e	7	149489038	149489038	G	A	SNP	SSPO	ENST00000262089	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.022	-	-	-	no_errors	SSPO	HGNC	ENSG00000197558				51	0	0	32	6	15.7895
VPS41	0	genome.wustl.edu	37	7	38791832	38791832	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6709-01A-11D-1882-08	TCGA-BR-6709-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2971a8ef-a8bf-4f6b-9f8d-c3c15037a46e	9adfad1c-29d2-4781-9e71-8b756b46538e	7	38791832	38791832	C	T	SNP	VPS41	ENST00000310301	human	ensembl	74_37	-1	known	missense	c.1870	p.D624N	1.000	pfam_Clathrin_H-chain/VPS_repeat,superfamily_ARM-type_fold,smart_Clathrin_H-chain/VPS_repeat,pirsf_VPS41	pfam_Clathrin_H-chain/VPS_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Clathrin_H-chain/VPS_repeat,pirsf_VPS41,pfscan_Znf_RING	-	no_errors	VPS41	HGNC	ENSG00000006715				163	0	0	135	22	14.0127
POR	0	genome.wustl.edu	37	7	75609838	75609838	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6709-01A-11D-1882-08	TCGA-BR-6709-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2971a8ef-a8bf-4f6b-9f8d-c3c15037a46e	9adfad1c-29d2-4781-9e71-8b756b46538e	7	75609838	75609838	G	T	SNP	POR	ENST00000450476	human	ensembl	74_37	+1	known	missense	c.11	p.R4L	0.002	pfscan_Flavodoxin/NO_synth	pfam_FAD-binding_1,pfam_OxRdtase_FAD/NAD-bd,pfam_Flavodoxin/NO_synth,superfamily_Riboflavin_synthase-like_b-brl,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	POR	HGNC	ENSG00000127948				107	0	0	82	13	13.6842
CALCR	0	genome.wustl.edu	37	7	93065271	93065271	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6709-01A-11D-1882-08	TCGA-BR-6709-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2971a8ef-a8bf-4f6b-9f8d-c3c15037a46e	9adfad1c-29d2-4781-9e71-8b756b46538e	7	93065271	93065271	T	C	SNP	CALCR	ENST00000359558	human	ensembl	74_37	-1	known	missense	c.1244	p.H415R	1.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like,prints_GCPR_2_calcitonin_rcpt_fam,prints_GPCR_2_secretin-like,prints_GPCR_2_calcitonin_rcpt	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GCPR_2_calcitonin_rcpt_fam,prints_GPCR_2_secretin-like,prints_GPCR_2_calcitonin_rcpt	-	no_errors	CALCR	HGNC	ENSG00000004948				35	0	0	30	7	18.9189
CSMD3	0	genome.wustl.edu	37	8	113420594	113420594	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6709-01A-11D-1882-08	TCGA-BR-6709-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2971a8ef-a8bf-4f6b-9f8d-c3c15037a46e	9adfad1c-29d2-4781-9e71-8b756b46538e	8	113420594	113420594	G	T	SNP	CSMD3	ENST00000297405	human	ensembl	74_37	-1	known	missense	c.5558	p.T1853N	1.000	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796				176	1	0.564972	207	25	10.7759
PPP1R42	0	genome.wustl.edu	37	8	67929951	67929951	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6709-01A-11D-1882-08	TCGA-BR-6709-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2971a8ef-a8bf-4f6b-9f8d-c3c15037a46e	9adfad1c-29d2-4781-9e71-8b756b46538e	8	67929951	67929951	C	A	SNP	PPP1R42	ENST00000522909	human	ensembl	74_37	-1	known	missense	c.32	p.R11I	0.324	NULL	pfam_Leu-rich_rpt	-	no_errors	PPP1R42	HGNC	ENSG00000178125				65	0	0	81	5	5.81395
TMEM8B	0	genome.wustl.edu	37	9	35853171	35853171	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6709-01A-11D-1882-08	TCGA-BR-6709-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2971a8ef-a8bf-4f6b-9f8d-c3c15037a46e	9adfad1c-29d2-4781-9e71-8b756b46538e	9	35853171	35853171	A	G	SNP	TMEM8B	ENST00000377988	human	ensembl	74_37	+1	known	missense	c.1000	p.M334V	1.000	pfam_DUF3522	pfam_DUF3522	-	no_errors	TMEM8B	HGNC	ENSG00000137103				257	0	0	416	34	7.55556
WWC3	0	genome.wustl.edu	37	X	10094279	10094279	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6709-01A-11D-1882-08	TCGA-BR-6709-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2971a8ef-a8bf-4f6b-9f8d-c3c15037a46e	9adfad1c-29d2-4781-9e71-8b756b46538e	X	10094279	10094279	C	T	SNP	WWC3	ENST00000380861	human	ensembl	74_37	+1	known	missense	c.2039	p.A680V	0.000	superfamily_C2_dom	superfamily_C2_dom	-	no_errors	WWC3	HGNC	ENSG00000047644				208	0	0	143	30	17.341
ZMYM3	0	genome.wustl.edu	37	X	70465871	70465871	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6709-01A-11D-1882-08	TCGA-BR-6709-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2971a8ef-a8bf-4f6b-9f8d-c3c15037a46e	9adfad1c-29d2-4781-9e71-8b756b46538e	X	70465871	70465871	G	C	SNP	ZMYM3	ENST00000373988	human	ensembl	74_37	-1	known	missense	c.2656	p.Q886E	1.000	NULL	pfam_Znf_MYM,pfam_DUF3504,smart_TRASH_dom	-	no_errors	ZMYM3	HGNC	ENSG00000147130				147	0	0	109	15	12.0968
MAN1A2	0	genome.wustl.edu	37	1	118039415	118039416	+	Frame_Shift_Ins	INS	-	-	GT			TCGA-BR-6709-01A-11D-1882-08	TCGA-BR-6709-10A-01D-1882-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2971a8ef-a8bf-4f6b-9f8d-c3c15037a46e	9adfad1c-29d2-4781-9e71-8b756b46538e	1	118039415	118039416	-	GT	INS	MAN1A2	ENST00000356554	human	ensembl	74_37	+1	known	frame_shift_ins	c.1315_1316	p.G440fs	1.000:1.000	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47,prints_Glyco_hydro_47	-	no_errors	MAN1A2	HGNC	ENSG00000198162				135	0	0	128	16	11.1111
