Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
CPSF3L	0	genome.wustl.edu	37	1	1247219	1247219	+	RNA	SNP	G	G	A			TCGA-BR-6801-01A-11D-1882-08	TCGA-BR-6801-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cee38c82-b415-4da9-adfe-664814ddbfd3	35f087a6-294f-42a2-a031-dc3109fe692d	1	1247219	1247219	G	A	SNP	CPSF3L	ENST00000462432	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CPSF3L	HGNC	ENSG00000127054				30	0	0	11	17	60.7143
SMG5	0	genome.wustl.edu	37	1	156235937	156235937	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6801-01A-11D-1882-08	TCGA-BR-6801-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cee38c82-b415-4da9-adfe-664814ddbfd3	35f087a6-294f-42a2-a031-dc3109fe692d	1	156235937	156235937	G	A	SNP	SMG5	ENST00000361813	human	ensembl	74_37	-1	known	missense	c.1490	p.S497F	0.994	NULL	pfam_EST1,smart_PIN_dom	-	no_errors	SMG5	HGNC	ENSG00000198952				146	0	0	53	72	57.6
SPTA1	0	genome.wustl.edu	37	1	158651377	158651377	+	Silent	SNP	G	G	A			TCGA-BR-6801-01A-11D-1882-08	TCGA-BR-6801-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cee38c82-b415-4da9-adfe-664814ddbfd3	35f087a6-294f-42a2-a031-dc3109fe692d	1	158651377	158651377	G	A	SNP	SPTA1	ENST00000368147	human	ensembl	74_37	-1	known	silent	c.471	p.A157	1.000	NULL	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_hand_dom,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554				212	0	0	74	129	63.5468
ASAP3	0	genome.wustl.edu	37	1	23763702	23763702	+	Silent	SNP	C	C	T			TCGA-BR-6801-01A-11D-1882-08	TCGA-BR-6801-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cee38c82-b415-4da9-adfe-664814ddbfd3	35f087a6-294f-42a2-a031-dc3109fe692d	1	23763702	23763702	C	T	SNP	ASAP3	ENST00000336689	human	ensembl	74_37	-1	known	silent	c.1263	p.P421	0.956	NULL	pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	ASAP3	HGNC	ENSG00000088280				21	0	0	4	8	66.6667
COL9A2	0	genome.wustl.edu	37	1	40775783	40775783	+	Silent	SNP	C	C	T			TCGA-BR-6801-01A-11D-1882-08	TCGA-BR-6801-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cee38c82-b415-4da9-adfe-664814ddbfd3	35f087a6-294f-42a2-a031-dc3109fe692d	1	40775783	40775783	C	T	SNP	COL9A2	ENST00000372748	human	ensembl	74_37	-1	known	silent	c.792	p.P264	0.271	NULL	pfam_Collagen	-	no_errors	COL9A2	HGNC	ENSG00000049089				159	0	0	69	69	50
PGR	0	genome.wustl.edu	37	11	100999115	100999115	+	Silent	SNP	G	G	A			TCGA-BR-6801-01A-11D-1882-08	TCGA-BR-6801-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cee38c82-b415-4da9-adfe-664814ddbfd3	35f087a6-294f-42a2-a031-dc3109fe692d	11	100999115	100999115	G	A	SNP	PGR	ENST00000325455	human	ensembl	74_37	-1	known	silent	c.687	p.S229	0.760	pfam_Progest_rcpt	pfam_Progest_rcpt,pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Progest_rcpt,prints_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt	-	no_errors	PGR	HGNC	ENSG00000082175				32	0	0	7	29	80.5556
DDX54	0	genome.wustl.edu	37	12	113603453	113603453	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6801-01A-11D-1882-08	TCGA-BR-6801-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cee38c82-b415-4da9-adfe-664814ddbfd3	35f087a6-294f-42a2-a031-dc3109fe692d	12	113603453	113603453	C	T	SNP	DDX54	ENST00000314045	human	ensembl	74_37	-1	known	missense	c.1715	p.R572Q	0.987	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_DBP10CT,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX54	HGNC	ENSG00000123064				31	0	0	20	3	13.0435
HOXC11	0	genome.wustl.edu	37	12	54367430	54367430	+	Silent	SNP	C	C	T			TCGA-BR-6801-01A-11D-1882-08	TCGA-BR-6801-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cee38c82-b415-4da9-adfe-664814ddbfd3	35f087a6-294f-42a2-a031-dc3109fe692d	12	54367430	54367430	C	T	SNP	HOXC11	ENST00000546378	human	ensembl	74_37	+1	known	silent	c.405	p.A135	0.997	pfam_DUF3528	pfam_DUF3528,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	HOXC11	HGNC	ENSG00000123388				323	1	0.308642	115	138	54.5455
CEBPE	0	genome.wustl.edu	37	14	23587828	23587828	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6801-01A-11D-1882-08	TCGA-BR-6801-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cee38c82-b415-4da9-adfe-664814ddbfd3	35f087a6-294f-42a2-a031-dc3109fe692d	14	23587828	23587828	G	A	SNP	CEBPE	ENST00000206513	human	ensembl	74_37	-1	known	missense	c.473	p.T158I	0.174	pirsf_CCAAT/enhancer-binding	pfam_bZIP,smart_bZIP,pirsf_CCAAT/enhancer-binding,pfscan_bZIP	-	no_errors	CEBPE	HGNC	ENSG00000092067				46	0	0	10	26	72.2222
FOXG1	0	genome.wustl.edu	37	14	29237757	29237757	+	Silent	SNP	G	G	A			TCGA-BR-6801-01A-11D-1882-08	TCGA-BR-6801-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cee38c82-b415-4da9-adfe-664814ddbfd3	35f087a6-294f-42a2-a031-dc3109fe692d	14	29237757	29237757	G	A	SNP	FOXG1	ENST00000313071	human	ensembl	74_37	+1	known	silent	c.1272	p.P424	1.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXG1	HGNC	ENSG00000176165				58	0	0	24	27	52.9412
SIPA1L1	0	genome.wustl.edu	37	14	72055091	72055091	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6801-01A-11D-1882-08	TCGA-BR-6801-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cee38c82-b415-4da9-adfe-664814ddbfd3	35f087a6-294f-42a2-a031-dc3109fe692d	14	72055091	72055091	C	T	SNP	SIPA1L1	ENST00000555818	human	ensembl	74_37	+1	known	missense	c.502	p.R168C	1.000	NULL	pfam_DUF3401,pfam_Rap_GAP_dom,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP_dom	-	no_errors	SIPA1L1	HGNC	ENSG00000197555				61	0	0	25	34	57.6271
DUOX1	0	genome.wustl.edu	37	15	45433241	45433241	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6801-01A-11D-1882-08	TCGA-BR-6801-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cee38c82-b415-4da9-adfe-664814ddbfd3	35f087a6-294f-42a2-a031-dc3109fe692d	15	45433241	45433241	G	A	SNP	DUOX1	ENST00000321429	human	ensembl	74_37	+1	known	missense	c.1538	p.R513H	1.000	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_EF_hand_dom,superfamily_Haem_peroxidase,superfamily_Riboflavin_synthase-like_b-brl,smart_EF_hand_dom,prints_Haem_peroxidase_animal_subgr,prints_Recoverin,pfscan_EF_hand_dom,pfscan_Haem_peroxidase_animal	-	no_errors	DUOX1	HGNC	ENSG00000137857				174	1	0.571429	70	76	52.0548
ATP8B4	0	genome.wustl.edu	37	15	50189583	50189583	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6801-01A-11D-1882-08	TCGA-BR-6801-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cee38c82-b415-4da9-adfe-664814ddbfd3	35f087a6-294f-42a2-a031-dc3109fe692d	15	50189583	50189583	C	T	SNP	ATP8B4	ENST00000284509	human	ensembl	74_37	-1	known	missense	c.2603	p.R868Q	1.000	superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP8B4	HGNC	ENSG00000104043				338	0	0	117	161	57.9137
VPS13C	0	genome.wustl.edu	37	15	62237921	62237921	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6801-01A-11D-1882-08	TCGA-BR-6801-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cee38c82-b415-4da9-adfe-664814ddbfd3	35f087a6-294f-42a2-a031-dc3109fe692d	15	62237921	62237921	G	A	SNP	VPS13C	ENST00000261517	human	ensembl	74_37	-1	known	missense	c.5141	p.S1714F	1.000	NULL	pfam_VPSAP_dom,pfam_Autophagy-rel_C	-	no_errors	VPS13C	HGNC	ENSG00000129003				153	0	0	50	50	50
IGDCC3	0	genome.wustl.edu	37	15	65621886	65621886	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6801-01A-11D-1882-08	TCGA-BR-6801-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cee38c82-b415-4da9-adfe-664814ddbfd3	35f087a6-294f-42a2-a031-dc3109fe692d	15	65621886	65621886	G	A	SNP	IGDCC3	ENST00000327987	human	ensembl	74_37	-1	known	missense	c.2047	p.P683S	1.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Fibronectin_type3,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	IGDCC3	HGNC	ENSG00000174498				98	0	0	99	8	7.47664
ISLR2	0	genome.wustl.edu	37	15	74425927	74425927	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6801-01A-11D-1882-08	TCGA-BR-6801-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cee38c82-b415-4da9-adfe-664814ddbfd3	35f087a6-294f-42a2-a031-dc3109fe692d	15	74425927	74425927	G	A	SNP	ISLR2	ENST00000361742	human	ensembl	74_37	+1	known	missense	c.832	p.G278S	0.475	pfscan_Ig-like_dom	pfam_Leu-rich_rpt,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_Ig-like_dom	-	no_errors	ISLR2	HGNC	ENSG00000167178				47	0	0	22	30	57.6923
DNAJA2	0	genome.wustl.edu	37	16	47005450	47005450	+	Nonsense_Mutation	SNP	G	G	C			TCGA-BR-6801-01A-11D-1882-08	TCGA-BR-6801-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cee38c82-b415-4da9-adfe-664814ddbfd3	35f087a6-294f-42a2-a031-dc3109fe692d	16	47005450	47005450	G	C	SNP	DNAJA2	ENST00000317089	human	ensembl	74_37	-1	known	nonsense	c.173	p.S58*	0.999	pfam_DnaJ_domain,superfamily_DnaJ_domain,smart_DnaJ_domain,pfscan_DnaJ_domain	pfam_DnaJ_C,pfam_DnaJ_domain,pfam_HSP_DnaJ_Cys-rich_dom,superfamily_DnaJ_domain,superfamily_HSP40/DnaJ_pept-bd,superfamily_HSP_DnaJ_Cys-rich_dom,smart_DnaJ_domain,pfscan_DnaJ_domain,pfscan_HSP_DnaJ_Cys-rich_dom,prints_DnaJ_domain	-	no_errors	DNAJA2	HGNC	ENSG00000069345				206	0	0	160	12	6.97674
SPG7	0	genome.wustl.edu	37	16	89611154	89611154	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6801-01A-11D-1882-08	TCGA-BR-6801-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cee38c82-b415-4da9-adfe-664814ddbfd3	35f087a6-294f-42a2-a031-dc3109fe692d	16	89611154	89611154	G	A	SNP	SPG7	ENST00000268704	human	ensembl	74_37	+1	known	missense	c.1423	p.V475I	1.000	pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase,tigrfam_FtsH	pfam_Peptidase_M41,pfam_ATPase_AAA_core,pfam_Pept_M41_FtsH_extracell,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase,tigrfam_FtsH	-	no_errors	SPG7	HGNC	ENSG00000197912				111	0	0	38	63	62.3762
TRIM16	0	genome.wustl.edu	37	17	15539380	15539380	+	Silent	SNP	C	C	T			TCGA-BR-6801-01A-11D-1882-08	TCGA-BR-6801-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cee38c82-b415-4da9-adfe-664814ddbfd3	35f087a6-294f-42a2-a031-dc3109fe692d	17	15539380	15539380	C	T	SNP	TRIM16	ENST00000336708	human	ensembl	74_37	-1	known	silent	c.819	p.A273	0.008	NULL	pfam_SPRY_rcpt,pfam_Znf_B-box,superfamily_ConA-like_lec_gl_sf,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,prints_Butyrophylin	-	no_errors	TRIM16	HGNC	ENSG00000221926				66	0	0	19	23	54.7619
TRIM16L	0	genome.wustl.edu	37	17	18631041	18631041	+	Silent	SNP	G	G	A			TCGA-BR-6801-01A-11D-1882-08	TCGA-BR-6801-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cee38c82-b415-4da9-adfe-664814ddbfd3	35f087a6-294f-42a2-a031-dc3109fe692d	17	18631041	18631041	G	A	SNP	TRIM16L	ENST00000395902	human	ensembl	74_37	+1	known	silent	c.333	p.A111	0.636	NULL	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_PRY,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY	-	no_errors	TRIM16L	HGNC	ENSG00000108448				155	0	0	124	8	6.06061
NPEPPS	0	genome.wustl.edu	37	17	45668182	45668182	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6801-01A-11D-1882-08	TCGA-BR-6801-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cee38c82-b415-4da9-adfe-664814ddbfd3	35f087a6-294f-42a2-a031-dc3109fe692d	17	45668182	45668182	T	C	SNP	NPEPPS	ENST00000322157	human	ensembl	74_37	+1	known	missense	c.1195	p.F399L	1.000	pfam_Peptidase_M1_N	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	NPEPPS	HGNC	ENSG00000141279				158	0	0	131	23	14.9351
PELP1	0	genome.wustl.edu	37	17	4576196	4576196	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6801-01A-11D-1882-08	TCGA-BR-6801-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cee38c82-b415-4da9-adfe-664814ddbfd3	35f087a6-294f-42a2-a031-dc3109fe692d	17	4576196	4576196	G	A	SNP	PELP1	ENST00000301396	human	ensembl	74_37	-1	known	missense	c.2522	p.S841L	0.276	NULL	pfam_Uncharacterised_NUC202,superfamily_ARM-type_fold	-	no_errors	PELP1	HGNC	ENSG00000141456				74	0	0	33	33	50
LAMA1	0	genome.wustl.edu	37	18	6974963	6974963	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6801-01A-11D-1882-08	TCGA-BR-6801-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cee38c82-b415-4da9-adfe-664814ddbfd3	35f087a6-294f-42a2-a031-dc3109fe692d	18	6974963	6974963	G	A	SNP	LAMA1	ENST00000389658	human	ensembl	74_37	-1	known	missense	c.6562	p.R2188C	0.542	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_B_type_IV,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_II,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA1	HGNC	ENSG00000101680				54	0	0	18	32	64
ZNF490	0	genome.wustl.edu	37	19	12691634	12691634	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6801-01A-11D-1882-08	TCGA-BR-6801-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cee38c82-b415-4da9-adfe-664814ddbfd3	35f087a6-294f-42a2-a031-dc3109fe692d	19	12691634	12691634	C	G	SNP	ZNF490	ENST00000311437	human	ensembl	74_37	-1	known	missense	c.1255	p.E419Q	0.015	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF490	HGNC	ENSG00000188033				142	0	0	42	66	61.1111
PTPRH	0	genome.wustl.edu	37	19	55697282	55697282	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6801-01A-11D-1882-08	TCGA-BR-6801-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cee38c82-b415-4da9-adfe-664814ddbfd3	35f087a6-294f-42a2-a031-dc3109fe692d	19	55697282	55697282	A	G	SNP	PTPRH	ENST00000376350	human	ensembl	74_37	-1	known	missense	c.2849	p.V950A	0.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRH	HGNC	ENSG00000080031				152	0	0	64	49	43.3628
FIZ1	0	genome.wustl.edu	37	19	56108964	56108964	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6801-01A-11D-1882-08	TCGA-BR-6801-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cee38c82-b415-4da9-adfe-664814ddbfd3	35f087a6-294f-42a2-a031-dc3109fe692d	19	56108964	56108964	C	T	SNP	FIZ1	ENST00000221665	human	ensembl	74_37	-1	known	missense	c.268	p.D90N	0.192	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	FIZ1	HGNC	ENSG00000179943				49	0	0	30	6	16.6667
ZNF470	0	genome.wustl.edu	37	19	57088681	57088681	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6801-01A-11D-1882-08	TCGA-BR-6801-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cee38c82-b415-4da9-adfe-664814ddbfd3	35f087a6-294f-42a2-a031-dc3109fe692d	19	57088681	57088681	A	G	SNP	ZNF470	ENST00000330619	human	ensembl	74_37	+1	known	missense	c.884	p.Q295R	0.968	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF470	HGNC	ENSG00000197016				91	0	0	40	41	50.6173
LRP1B	0	genome.wustl.edu	37	2	141299517	141299517	+	Silent	SNP	C	C	T			TCGA-BR-6801-01A-11D-1882-08	TCGA-BR-6801-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cee38c82-b415-4da9-adfe-664814ddbfd3	35f087a6-294f-42a2-a031-dc3109fe692d	2	141299517	141299517	C	T	SNP	LRP1B	ENST00000389484	human	ensembl	74_37	-1	known	silent	c.7218	p.G2406	0.013	smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702				39	0	0	29	3	9.375
NEB	0	genome.wustl.edu	37	2	152486101	152486101	+	Silent	SNP	G	G	A			TCGA-BR-6801-01A-11D-1882-08	TCGA-BR-6801-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cee38c82-b415-4da9-adfe-664814ddbfd3	35f087a6-294f-42a2-a031-dc3109fe692d	2	152486101	152486101	G	A	SNP	NEB	ENST00000397345	human	ensembl	74_37	-1	known	silent	c.9783	p.D3261	0.973	pfam_Nebulin_35r-motif,smart_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,pfscan_Nebulin_35r-motif,pfscan_SH3_domain,prints_Nebulin	-	no_errors	NEB	HGNC	ENSG00000183091				165	0	0	59	68	53.5433
NR4A2	0	genome.wustl.edu	37	2	157186116	157186116	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6801-01A-11D-1882-08	TCGA-BR-6801-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cee38c82-b415-4da9-adfe-664814ddbfd3	35f087a6-294f-42a2-a031-dc3109fe692d	2	157186116	157186116	C	T	SNP	NR4A2	ENST00000539077	human	ensembl	74_37	-1	known	missense	c.616	p.D206N	1.000	prints_NURR_rcpt	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_NURR_rcpt,prints_Nuc_orph_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Retinoic_acid_rcpt	-	no_errors	NR4A2	HGNC	ENSG00000153234				155	1	0.641026	49	69	58.4746
ASNSD1	0	genome.wustl.edu	37	2	190532562	190532562	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6801-01A-11D-1882-08	TCGA-BR-6801-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cee38c82-b415-4da9-adfe-664814ddbfd3	35f087a6-294f-42a2-a031-dc3109fe692d	2	190532562	190532562	C	T	SNP	ASNSD1	ENST00000260952	human	ensembl	74_37	+1	known	missense	c.1537	p.H513Y	0.004	pfam_Asn_synthase	pfam_Asn_synthase	-	no_errors	ASNSD1	HGNC	ENSG00000138381				114	0	0	75	12	13.7931
TEKT4	0	genome.wustl.edu	37	2	95539774	95539774	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6801-01A-11D-1882-08	TCGA-BR-6801-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cee38c82-b415-4da9-adfe-664814ddbfd3	35f087a6-294f-42a2-a031-dc3109fe692d	2	95539774	95539774	A	C	SNP	TEKT4	ENST00000295201	human	ensembl	74_37	+1	known	missense	c.634	p.I212L	0.966	pfam_Tektin	pfam_Tektin,prints_Tektin	-	no_errors	TEKT4	HGNC	ENSG00000163060				132	0	0	121	8	6.20155
NCOA6	0	genome.wustl.edu	37	20	33345744	33345744	+	Silent	SNP	C	C	T			TCGA-BR-6801-01A-11D-1882-08	TCGA-BR-6801-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cee38c82-b415-4da9-adfe-664814ddbfd3	35f087a6-294f-42a2-a031-dc3109fe692d	20	33345744	33345744	C	T	SNP	NCOA6	ENST00000359003	human	ensembl	74_37	-1	known	silent	c.807	p.Q269	0.002	NULL	NULL	-	no_errors	NCOA6	HGNC	ENSG00000198646				67	0	0	99	7	6.60377
JPH2	0	genome.wustl.edu	37	20	42789015	42789015	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6801-01A-11D-1882-08	TCGA-BR-6801-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cee38c82-b415-4da9-adfe-664814ddbfd3	35f087a6-294f-42a2-a031-dc3109fe692d	20	42789015	42789015	G	A	SNP	JPH2	ENST00000372980	human	ensembl	74_37	-1	known	missense	c.412	p.R138C	1.000	pfam_MORN,smart_MORN,pirsf_Junctophilin	pfam_MORN,smart_MORN,pirsf_Junctophilin	-	no_errors	JPH2	HGNC	ENSG00000149596				22	0	0	30	2	6.25
SERINC3	0	genome.wustl.edu	37	20	43135528	43135528	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6801-01A-11D-1882-08	TCGA-BR-6801-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cee38c82-b415-4da9-adfe-664814ddbfd3	35f087a6-294f-42a2-a031-dc3109fe692d	20	43135528	43135528	G	C	SNP	SERINC3	ENST00000255175	human	ensembl	74_37	-1	known	missense	c.723	p.I241M	1.000	pfam_TMS_TDE	pfam_TMS_TDE	-	no_errors	SERINC3	HGNC	ENSG00000132824				73	0	0	56	24	30
BCAS1	0	genome.wustl.edu	37	20	52645436	52645436	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6801-01A-11D-1882-08	TCGA-BR-6801-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cee38c82-b415-4da9-adfe-664814ddbfd3	35f087a6-294f-42a2-a031-dc3109fe692d	20	52645436	52645436	G	T	SNP	BCAS1	ENST00000371440	human	ensembl	74_37	-1	known	missense	c.218	p.A73E	0.005	NULL	NULL	-	no_errors	BCAS1	HGNC	ENSG00000064787				83	0	0	46	29	38.6667
ZNF831	0	genome.wustl.edu	37	20	57767259	57767259	+	Silent	SNP	C	C	T			TCGA-BR-6801-01A-11D-1882-08	TCGA-BR-6801-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cee38c82-b415-4da9-adfe-664814ddbfd3	35f087a6-294f-42a2-a031-dc3109fe692d	20	57767259	57767259	C	T	SNP	ZNF831	ENST00000371030	human	ensembl	74_37	+1	novel	silent	c.1185	p.A395	0.005	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF831	HGNC	ENSG00000124203				15	0	0	15	4	21.0526
DSCR10	0	genome.wustl.edu	37	21	39580375	39580375	+	RNA	SNP	T	T	A			TCGA-BR-6801-01A-11D-1882-08	TCGA-BR-6801-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cee38c82-b415-4da9-adfe-664814ddbfd3	35f087a6-294f-42a2-a031-dc3109fe692d	21	39580375	39580375	T	A	SNP	DSCR10	ENST00000432141	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	DSCR10	HGNC	ENSG00000233316				212	0	0	96	118	55.1402
TRIOBP	0	genome.wustl.edu	37	22	38130723	38130723	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6801-01A-11D-1882-08	TCGA-BR-6801-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cee38c82-b415-4da9-adfe-664814ddbfd3	35f087a6-294f-42a2-a031-dc3109fe692d	22	38130723	38130723	G	A	SNP	TRIOBP	ENST00000406386	human	ensembl	74_37	+1	known	nonsense	c.4380	p.W1460*	0.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	TRIOBP	HGNC	ENSG00000100106				19	0	0	6	8	57.1429
XRCC6	0	genome.wustl.edu	37	22	42033616	42033616	+	Silent	SNP	C	C	T			TCGA-BR-6801-01A-11D-1882-08	TCGA-BR-6801-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cee38c82-b415-4da9-adfe-664814ddbfd3	35f087a6-294f-42a2-a031-dc3109fe692d	22	42033616	42033616	C	T	SNP	XRCC6	ENST00000359308	human	ensembl	74_37	+1	known	silent	c.594	p.I198	1.000	pirsf_Ku70,pfam_Ku_N,tigrfam_Ku70	pirsf_Ku70,pfam_Ku_N,pfam_Ku70/Ku80_beta-barrel_dom,pfam_Ku_C,pfam_SAP_dom,superfamily_SPOC_like_C_dom,smart_Ku70/Ku80_beta-barrel_dom,smart_SAP_dom,pfscan_SAP_dom,tigrfam_Ku70	-	no_errors	XRCC6	HGNC	ENSG00000196419				25	0	0	7	9	56.25
KIAA1524	0	genome.wustl.edu	37	3	108273290	108273290	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6801-01A-11D-1882-08	TCGA-BR-6801-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cee38c82-b415-4da9-adfe-664814ddbfd3	35f087a6-294f-42a2-a031-dc3109fe692d	3	108273290	108273290	C	T	SNP	KIAA1524	ENST00000295746	human	ensembl	74_37	-1	known	missense	c.2257	p.D753N	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	KIAA1524	HGNC	ENSG00000163507				24	0	0	13	3	18.75
TRANK1	0	genome.wustl.edu	37	3	36869827	36869827	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6801-01A-11D-1882-08	TCGA-BR-6801-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cee38c82-b415-4da9-adfe-664814ddbfd3	35f087a6-294f-42a2-a031-dc3109fe692d	3	36869827	36869827	T	A	SNP	TRANK1	ENST00000429976	human	ensembl	74_37	-1	known	missense	c.8717	p.D2906V	1.000	NULL	pfam_UvrD-like_ATP-bd,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_TPR_repeat,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR-contain_dom	-	no_errors	TRANK1	HGNC	ENSG00000168016				34	0	0	15	21	58.3333
SCN10A	0	genome.wustl.edu	37	3	38739967	38739967	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6801-01A-11D-1882-08	TCGA-BR-6801-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cee38c82-b415-4da9-adfe-664814ddbfd3	35f087a6-294f-42a2-a031-dc3109fe692d	3	38739967	38739967	G	A	SNP	SCN10A	ENST00000449082	human	ensembl	74_37	-1	known	missense	c.4744	p.R1582C	1.000	pfam_Ion_trans_dom,pfam_PKD1_2_channel	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN10A	HGNC	ENSG00000185313				96	0	0	44	52	54.1667
MSANTD1	0	genome.wustl.edu	37	4	3251150	3251150	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6801-01A-11D-1882-08	TCGA-BR-6801-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cee38c82-b415-4da9-adfe-664814ddbfd3	35f087a6-294f-42a2-a031-dc3109fe692d	4	3251150	3251150	G	C	SNP	MSANTD1	ENST00000438480	human	ensembl	74_37	+1	known	missense	c.201	p.Q67H	1.000	NULL	NULL	-	no_errors	MSANTD1	HGNC	ENSG00000188981				31	0	0	10	11	52.381
GRID2	0	genome.wustl.edu	37	4	94344119	94344119	+	Silent	SNP	G	G	A			TCGA-BR-6801-01A-11D-1882-08	TCGA-BR-6801-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cee38c82-b415-4da9-adfe-664814ddbfd3	35f087a6-294f-42a2-a031-dc3109fe692d	4	94344119	94344119	G	A	SNP	GRID2	ENST00000282020	human	ensembl	74_37	+1	known	silent	c.1545	p.K515	1.000	pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_Iontro_glu_rcpt,pfam_ANF_lig-bd_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRID2	HGNC	ENSG00000152208				39	0	0	13	23	63.8889
ADCY2	0	genome.wustl.edu	37	5	7695884	7695884	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6801-01A-11D-1882-08	TCGA-BR-6801-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cee38c82-b415-4da9-adfe-664814ddbfd3	35f087a6-294f-42a2-a031-dc3109fe692d	5	7695884	7695884	G	A	SNP	ADCY2	ENST00000338316	human	ensembl	74_37	+1	known	missense	c.889	p.V297I	1.000	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY2	HGNC	ENSG00000078295				50	0	0	23	18	43.9024
CDC5L	0	genome.wustl.edu	37	6	44392169	44392169	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6801-01A-11D-1882-08	TCGA-BR-6801-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cee38c82-b415-4da9-adfe-664814ddbfd3	35f087a6-294f-42a2-a031-dc3109fe692d	6	44392169	44392169	G	A	SNP	CDC5L	ENST00000371477	human	ensembl	74_37	+1	known	missense	c.1418	p.R473Q	1.000	pfam_DUF3351	pfam_DUF3351,pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	CDC5L	HGNC	ENSG00000096401				89	0	0	31	40	56.338
ORC5	0	genome.wustl.edu	37	7	103848384	103848384	+	RNA	SNP	G	G	A			TCGA-BR-6801-01A-11D-1882-08	TCGA-BR-6801-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cee38c82-b415-4da9-adfe-664814ddbfd3	35f087a6-294f-42a2-a031-dc3109fe692d	7	103848384	103848384	G	A	SNP	ORC5	ENST00000485726	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.007	-	-	-	no_errors	ORC5	HGNC	ENSG00000164815				59	0	0	47	38	44.7059
C7orf33	0	genome.wustl.edu	37	7	148311189	148311189	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6801-01A-11D-1882-08	TCGA-BR-6801-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cee38c82-b415-4da9-adfe-664814ddbfd3	35f087a6-294f-42a2-a031-dc3109fe692d	7	148311189	148311189	C	T	SNP	C7orf33	ENST00000307003	human	ensembl	74_37	+1	known	missense	c.260	p.S87L	0.089	NULL	NULL	-	no_errors	C7orf33	HGNC	ENSG00000170279				96	0	0	128	16	11.1111
LANCL2	0	genome.wustl.edu	37	7	55492979	55492979	+	Silent	SNP	C	C	G			TCGA-BR-6801-01A-11D-1882-08	TCGA-BR-6801-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cee38c82-b415-4da9-adfe-664814ddbfd3	35f087a6-294f-42a2-a031-dc3109fe692d	7	55492979	55492979	C	G	SNP	LANCL2	ENST00000254770	human	ensembl	74_37	+1	known	silent	c.1041	p.A347	0.597	pfam_LANC-like,superfamily_6-hairpin_glycosidase-like,prints_LanC-like_prot_euk	pfam_LANC-like,superfamily_6-hairpin_glycosidase-like,prints_LanC-like_prot_euk,prints_LANC-like	-	no_errors	LANCL2	HGNC	ENSG00000132434				120	0	0	95	36	27.4809
AKAP9	0	genome.wustl.edu	37	7	91682266	91682266	+	Silent	SNP	C	C	T			TCGA-BR-6801-01A-11D-1882-08	TCGA-BR-6801-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cee38c82-b415-4da9-adfe-664814ddbfd3	35f087a6-294f-42a2-a031-dc3109fe692d	7	91682266	91682266	C	T	SNP	AKAP9	ENST00000359028	human	ensembl	74_37	+1	known	silent	c.5631	p.S1877	0.728	NULL	pfam_PACT_domain,superfamily_Prefoldin,superfamily_YbaB	-	no_errors	AKAP9	HGNC	ENSG00000127914				34	0	0	21	13	38.2353
GPR124	0	genome.wustl.edu	37	8	37691340	37691340	+	Silent	SNP	C	C	T			TCGA-BR-6801-01A-11D-1882-08	TCGA-BR-6801-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cee38c82-b415-4da9-adfe-664814ddbfd3	35f087a6-294f-42a2-a031-dc3109fe692d	8	37691340	37691340	C	T	SNP	GPR124	ENST00000412232	human	ensembl	74_37	+1	known	silent	c.1431	p.V477	0.227	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_GPCR_2_extracellular_dom,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,pfscan_GPS_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,pfscan_Ig-like_dom	-	no_errors	GPR124	HGNC	ENSG00000020181				100	0	0	40	59	59.596
NBN	0	genome.wustl.edu	37	8	90965531	90965531	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6801-01A-11D-1882-08	TCGA-BR-6801-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cee38c82-b415-4da9-adfe-664814ddbfd3	35f087a6-294f-42a2-a031-dc3109fe692d	8	90965531	90965531	C	T	SNP	NBN	ENST00000265433	human	ensembl	74_37	-1	known	missense	c.1786	p.D596N	0.001	pirsf_Nibrin_met	pfam_DNA-repair_Nbs1_C,pfam_FHA_dom,superfamily_SMAD_FHA_domain,superfamily_BRCT_dom,smart_FHA_dom,pirsf_Nibrin_met,pfscan_FHA_dom	-	no_errors	NBN	HGNC	ENSG00000104320				220	0	0	58	162	73.6364
ZBTB43	0	genome.wustl.edu	37	9	129594921	129594921	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6801-01A-11D-1882-08	TCGA-BR-6801-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cee38c82-b415-4da9-adfe-664814ddbfd3	35f087a6-294f-42a2-a031-dc3109fe692d	9	129594921	129594921	C	T	SNP	ZBTB43	ENST00000373457	human	ensembl	74_37	+1	known	missense	c.133	p.R45W	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB43	HGNC	ENSG00000169155				85	0	0	29	48	62.3377
TLN1	0	genome.wustl.edu	37	9	35714789	35714789	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6801-01A-11D-1882-08	TCGA-BR-6801-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cee38c82-b415-4da9-adfe-664814ddbfd3	35f087a6-294f-42a2-a031-dc3109fe692d	9	35714789	35714789	C	T	SNP	TLN1	ENST00000314888	human	ensembl	74_37	-1	known	missense	c.2839	p.G947S	1.000	NULL	pfam_Talin_cent,pfam_Vinculin-bd_dom,pfam_ILWEQ_dom,pfam_FERM_N,pfam_FERM_central,pfam_Insln_rcpt_S1,superfamily_Talin_cent,superfamily_Vinculin/catenin,superfamily_FERM_central,smart_Band_41_domain,smart_ILWEQ_dom,pfscan_FERM_domain,pfscan_ILWEQ_dom	-	no_errors	TLN1	HGNC	ENSG00000137076				168	0	0	50	74	59.6774
ZNF658	0	genome.wustl.edu	37	9	40772474	40772474	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6801-01A-11D-1882-08	TCGA-BR-6801-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cee38c82-b415-4da9-adfe-664814ddbfd3	35f087a6-294f-42a2-a031-dc3109fe692d	9	40772474	40772474	C	T	SNP	ZNF658	ENST00000377626	human	ensembl	74_37	-1	known	missense	c.2801	p.G934E	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF658	HGNC	ENSG00000196409				293	0	0	100	130	56.5217
HCFC1	0	genome.wustl.edu	37	X	153225353	153225353	+	Silent	SNP	C	C	T			TCGA-BR-6801-01A-11D-1882-08	TCGA-BR-6801-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cee38c82-b415-4da9-adfe-664814ddbfd3	35f087a6-294f-42a2-a031-dc3109fe692d	X	153225353	153225353	C	T	SNP	HCFC1	ENST00000310441	human	ensembl	74_37	-1	known	silent	c.1344	p.L448	1.000	smart_Fibronectin_type3	pfam_Kelch_2,pfam_Kelch_1,superfamily_Fibronectin_type3,smart_Fibronectin_type3	-	no_errors	HCFC1	HGNC	ENSG00000172534				51	0	0	22	66	75
MUC6	0	genome.wustl.edu	37	11	1016198	1016200	+	In_Frame_Del	DEL	AGA	AGA	-			TCGA-BR-6801-01A-11D-1882-08	TCGA-BR-6801-10A-01D-1882-08	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cee38c82-b415-4da9-adfe-664814ddbfd3	35f087a6-294f-42a2-a031-dc3109fe692d	11	1016198	1016200	AGA	-	DEL	MUC6	ENST00000421673	human	ensembl	74_37	-1	known	in_frame_del	c.6603_6601	p.S2201in_frame_del	0.001:0.010:0.003	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_Cys_knot_C,pfscan_Cys_knot_C	-	no_errors	MUC6	HGNC	ENSG00000184956				36	0	0	11	9	45
GRID2	0	genome.wustl.edu	37	4	94344114	94344114	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6801-01A-11D-1882-08	TCGA-BR-6801-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cee38c82-b415-4da9-adfe-664814ddbfd3	35f087a6-294f-42a2-a031-dc3109fe692d	4	94344114	94344114	T	-	DEL	GRID2	ENST00000282020	human	ensembl	74_37	+1	known	frame_shift_del	c.1540	p.F514fs	0.987	pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd	pfam_Iontro_glu_rcpt,pfam_ANF_lig-bd_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRID2	HGNC	ENSG00000152208				51	0	0	20	20	50
