Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
NTNG1	0	genome.wustl.edu	37	1	107867388	107867388	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	1	107867388	107867388	A	G	SNP	NTNG1	ENST00000370068	human	ensembl	74_37	+1	known	missense	c.731	p.Y244C	1.000	pfam_Laminin_N,smart_Laminin_N,pfscan_Laminin_N	pfam_Laminin_N,pfam_EGF_laminin,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	NTNG1	HGNC	ENSG00000162631				76	0	0	73	16	17.9775
VAV3	0	genome.wustl.edu	37	1	108417623	108417623	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	1	108417623	108417623	T	C	SNP	VAV3	ENST00000370056	human	ensembl	74_37	-1	known	missense	c.221	p.N74S	1.000	pfam_CAMSAP_CH,pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_DH-domain,pfam_SH3_2,pfam_CAMSAP_CH,pfam_SH3_domain,pfam_SH2,pfam_CH-domain,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_CH-domain,superfamily_SH3_domain,smart_CH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_SH3_domain,smart_SH2,pfscan_CH-domain,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain,prints_SH2,prints_SH3_domain,prints_SM22_calponin	-	no_errors	VAV3	HGNC	ENSG00000134215				72	0	0	71	9	11.25
AMPD2	0	genome.wustl.edu	37	1	110168017	110168017	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	1	110168017	110168017	C	T	SNP	AMPD2	ENST00000256578	human	ensembl	74_37	+1	known	missense	c.346	p.R116C	1.000	pirsf_AMP_deaminase	pfam_A/AMP_deaminase_dom,pirsf_AMP_deaminase,tigrfam_AMP_deaminase	-	no_errors	AMPD2	HGNC	ENSG00000116337				164	0	0	127	29	18.5897
KCND3	0	genome.wustl.edu	37	1	112318756	112318756	+	Silent	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	1	112318756	112318756	G	A	SNP	KCND3	ENST00000315987	human	ensembl	74_37	-1	known	silent	c.1911	p.G637	1.000	NULL	pfam_K_chnl_volt-dep_Kv4_C,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Shal-type,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv4,prints_K_chnl_volt-dep_Kv4.3,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCND3	HGNC	ENSG00000171385				140	0	0	99	23	18.8525
PTCHD2	0	genome.wustl.edu	37	1	11561740	11561740	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	1	11561740	11561740	C	T	SNP	PTCHD2	ENST00000294484	human	ensembl	74_37	+1	known	missense	c.691	p.R231W	0.000	NULL	pfam_Patched,pfam_MMPL_dom,pfscan_SSD	-	no_errors	PTCHD2	HGNC	ENSG00000204624				32	0	0	29	3	9.375
PTGFRN	0	genome.wustl.edu	37	1	117509774	117509774	+	Silent	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	1	117509774	117509774	C	T	SNP	PTGFRN	ENST00000393203	human	ensembl	74_37	+1	known	silent	c.1881	p.G627	0.319	smart_Ig_sub	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	PTGFRN	HGNC	ENSG00000134247				230	0	0	193	17	8.09524
MAN1A2	0	genome.wustl.edu	37	1	117944904	117944904	+	Silent	SNP	T	T	C			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	1	117944904	117944904	T	C	SNP	MAN1A2	ENST00000356554	human	ensembl	74_37	+1	known	silent	c.399	p.I133	0.886	NULL	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47,prints_Glyco_hydro_47	-	no_errors	MAN1A2	HGNC	ENSG00000198162				69	0	0	71	9	11.25
THEM4	0	genome.wustl.edu	37	1	151849482	151849482	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	1	151849482	151849482	G	A	SNP	THEM4	ENST00000368814	human	ensembl	74_37	-1	known	missense	c.677	p.A226V	0.692	NULL	pfam_Thioestr_supf	-	no_errors	THEM4	HGNC	ENSG00000159445				200	0	0	194	33	14.5374
FLG	0	genome.wustl.edu	37	1	152283959	152283959	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	1	152283959	152283959	T	C	SNP	FLG	ENST00000368799	human	ensembl	74_37	-1	known	missense	c.3403	p.R1135G	0.000	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631				525	2	0.379507	395	72	15.4176
FLG	0	genome.wustl.edu	37	1	152284170	152284170	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	1	152284170	152284170	C	T	SNP	FLG	ENST00000368799	human	ensembl	74_37	-1	known	nonsense	c.3192	p.W1064*	0.000	pfam_Filaggrin,prints_Filaggrin	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631				888	0	0	746	151	16.8339
FLG	0	genome.wustl.edu	37	1	152284172	152284172	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	1	152284172	152284172	A	G	SNP	FLG	ENST00000368799	human	ensembl	74_37	-1	known	missense	c.3190	p.W1064R	0.000	pfam_Filaggrin,prints_Filaggrin	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631				898	1	0.111235	735	150	16.9492
FCRL5	0	genome.wustl.edu	37	1	157497672	157497672	+	Silent	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	1	157497672	157497672	G	A	SNP	FCRL5	ENST00000356953	human	ensembl	74_37	-1	known	silent	c.1695	p.R565	0.933	NULL	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	FCRL5	HGNC	ENSG00000143297				111	0	0	101	15	12.931
ADAMTS4	0	genome.wustl.edu	37	1	161163166	161163166	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	1	161163166	161163166	C	T	SNP	ADAMTS4	ENST00000367996	human	ensembl	74_37	-1	known	missense	c.1748	p.R583H	1.000	NULL	pfam_ADAM_spacer1,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS4	HGNC	ENSG00000158859				88	0	0	59	15	20.2703
FCGR2A	0	genome.wustl.edu	37	1	161479827	161479827	+	Silent	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	1	161479827	161479827	G	A	SNP	FCGR2A	ENST00000271450	human	ensembl	74_37	+1	known	silent	c.582	p.T194	0.000	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	FCGR2A	HGNC	ENSG00000143226				108	0	0	93	17	15.4545
ZBTB17	0	genome.wustl.edu	37	1	16268919	16268919	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	1	16268919	16268919	C	T	SNP	ZBTB17	ENST00000375733	human	ensembl	74_37	-1	known	missense	c.2056	p.A686T	0.793	NULL	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB17	HGNC	ENSG00000116809				39	0	0	35	5	12.5
RASAL2	0	genome.wustl.edu	37	1	178411966	178411966	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	1	178411966	178411966	G	A	SNP	RASAL2	ENST00000367649	human	ensembl	74_37	+1	known	missense	c.1084	p.E362K	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom	pfam_DUF3498,pfam_RasGAP,pfam_Pleckstrin_homology,pfam_C2_dom,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,superfamily_PP1_inhibitor,smart_Pleckstrin_homology,smart_C2_dom,smart_RasGAP,pfscan_Pleckstrin_homology,pfscan_RasGAP	-	no_errors	RASAL2	HGNC	ENSG00000075391				131	0	0	94	11	10.4762
ARHGEF10L	0	genome.wustl.edu	37	1	17952451	17952451	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	1	17952451	17952451	C	T	SNP	ARHGEF10L	ENST00000361221	human	ensembl	74_37	+1	known	nonsense	c.1318	p.R440*	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,superfamily_DH-domain,superfamily_WD40_repeat_dom,smart_DH-domain,pfscan_DH-domain	-	no_errors	ARHGEF10L	HGNC	ENSG00000074964				134	0	0	115	26	18.4397
QSOX1	0	genome.wustl.edu	37	1	180135652	180135652	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	1	180135652	180135652	G	A	SNP	QSOX1	ENST00000367602	human	ensembl	74_37	+1	known	missense	c.292	p.A98T	0.966	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	pfam_ERV/ALR_sulphydryl_oxidase,pfam_Thioredoxin_domain,superfamily_ERV/ALR_sulphydryl_oxidase,superfamily_Thioredoxin-like_fold	-	no_errors	QSOX1	HGNC	ENSG00000116260				108	0	0	104	22	17.4603
PRG4	0	genome.wustl.edu	37	1	186280649	186280649	+	Silent	SNP	A	A	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	1	186280649	186280649	A	T	SNP	PRG4	ENST00000445192	human	ensembl	74_37	+1	known	silent	c.3714	p.G1238	0.999	superfamily_Hemopexin-like_dom,smart_Hemopexin-like_repeat	pfam_Somatomedin_B_dom,pfam_Hemopexin-like_repeat,superfamily_Hemopexin-like_dom,smart_Somatomedin_B_dom,smart_Hemopexin-like_repeat,prints_Somatomedin_B_chordata,pfscan_Somatomedin_B_dom	-	no_errors	PRG4	HGNC	ENSG00000116690				127	0	0	135	13	8.78378
F13B	0	genome.wustl.edu	37	1	197009701	197009701	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	1	197009701	197009701	G	A	SNP	F13B	ENST00000367412	human	ensembl	74_37	-1	known	nonsense	c.1903	p.Q635*	0.034	superfamily_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	F13B	HGNC	ENSG00000143278				85	0	0	77	11	12.5
ZC3H11A	0	genome.wustl.edu	37	1	203798733	203798733	+	Silent	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	1	203798733	203798733	G	A	SNP	ZC3H11A	ENST00000332127	human	ensembl	74_37	+1	known	silent	c.453	p.T151	0.998	NULL	smart_Znf_CCCH	-	no_errors	ZC3H11A	HGNC	ENSG00000058673				231	1	0.431034	191	18	8.61244
CR1	0	genome.wustl.edu	37	1	207737304	207737304	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	1	207737304	207737304	C	T	SNP	CR1	ENST00000367049	human	ensembl	74_37	+1	known	missense	c.3682	p.P1228S	0.924	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CR1	HGNC	ENSG00000203710				214	0	0	222	27	10.8434
SERTAD4	0	genome.wustl.edu	37	1	210415495	210415495	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	1	210415495	210415495	G	A	SNP	SERTAD4	ENST00000367012	human	ensembl	74_37	+1	known	missense	c.884	p.G295D	0.001	NULL	pfam_SERTA,pfscan_SERTA	-	no_errors	SERTAD4	HGNC	ENSG00000082497				58	0	0	48	11	18.6441
VASH2	0	genome.wustl.edu	37	1	213146075	213146075	+	Silent	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	1	213146075	213146075	C	T	SNP	VASH2	ENST00000517399	human	ensembl	74_37	+1	known	silent	c.651	p.D217	1.000	NULL	NULL	-	no_errors	VASH2	HGNC	ENSG00000143494				80	0	0	75	11	12.7907
HSPG2	0	genome.wustl.edu	37	1	22160079	22160079	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	1	22160079	22160079	C	T	SNP	HSPG2	ENST00000374695	human	ensembl	74_37	-1	known	missense	c.10859	p.R3620H	0.922	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Laminin_G,pfam_Laminin_B_type_IV,pfam_EGF_laminin,pfam_LDrepeatLR_classA_rpt,pfam_EG-like_dom,superfamily_ConA-like_lec_gl_sf,superfamily_LDrepeatLR_classA_rpt,smart_SEA_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Laminin_B_subgr,smart_EGF_laminin,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_LDrepeatLR_classA_rpt,pfscan_SEA_dom,pfscan_Ig-like_dom,prints_LDrepeatLR_classA_rpt	-	no_errors	HSPG2	HGNC	ENSG00000142798				71	0	0	55	4	6.77966
ZBTB40	0	genome.wustl.edu	37	1	22848916	22848916	+	Silent	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	1	22848916	22848916	G	A	SNP	ZBTB40	ENST00000375647	human	ensembl	74_37	+1	known	silent	c.3258	p.T1086	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB40	HGNC	ENSG00000184677				305	1	0.326797	229	53	18.7943
RYR2	0	genome.wustl.edu	37	1	237804199	237804199	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	1	237804199	237804199	A	G	SNP	RYR2	ENST00000360064	human	ensembl	74_37	+1	known	missense	c.7112	p.D2371G	0.998	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626				35	0	0	31	3	8.82353
OR2T12	0	genome.wustl.edu	37	1	248458331	248458331	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	1	248458331	248458331	G	A	SNP	OR2T12	ENST00000317996	human	ensembl	74_37	-1	known	missense	c.550	p.R184C	0.001	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2T12	HGNC	ENSG00000177201				152	0	0	139	17	10.8974
OR2T34	0	genome.wustl.edu	37	1	248737709	248737709	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	1	248737709	248737709	A	C	SNP	OR2T34	ENST00000328782	human	ensembl	74_37	-1	known	missense	c.350	p.V117G	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2T34	HGNC	ENSG00000183310				54	0	0	25	8	24.2424
EXTL1	0	genome.wustl.edu	37	1	26360246	26360246	+	Silent	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	1	26360246	26360246	G	A	SNP	EXTL1	ENST00000374280	human	ensembl	74_37	+1	known	silent	c.1578	p.T526	0.010	pfam_HexNAc_Trfase_a	pfam_HexNAc_Trfase_a,pfam_Exostosin	-	no_errors	EXTL1	HGNC	ENSG00000158008				154	0	0	104	25	19.3798
CATSPER4	0	genome.wustl.edu	37	1	26524487	26524487	+	Silent	SNP	C	C	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	1	26524487	26524487	C	A	SNP	CATSPER4	ENST00000456354	human	ensembl	74_37	+1	known	silent	c.597	p.P199	1.000	pfam_Ion_trans_dom,pfam_PKD1_2_channel	pfam_Ion_trans_dom,pfam_PKD1_2_channel	-	no_errors	CATSPER4	HGNC	ENSG00000188782				174	0	0	147	34	18.7845
ARID1A	0	genome.wustl.edu	37	1	27099008	27099008	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	1	27099008	27099008	C	T	SNP	ARID1A	ENST00000324856	human	ensembl	74_37	+1	known	nonsense	c.3424	p.Q1142*	1.000	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1A	HGNC	ENSG00000117713				97	0	0	68	9	11.6883
ARID1A	0	genome.wustl.edu	37	1	27106861	27106861	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	1	27106861	27106861	C	T	SNP	ARID1A	ENST00000324856	human	ensembl	74_37	+1	known	nonsense	c.6472	p.R2158*	1.000	pfam_DUF3518,superfamily_ARM-type_fold	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1A	HGNC	ENSG00000117713				135	0	0	112	15	11.811
FAM46B	0	genome.wustl.edu	37	1	27332693	27332693	+	Silent	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	1	27332693	27332693	G	A	SNP	FAM46B	ENST00000289166	human	ensembl	74_37	-1	known	silent	c.1020	p.Y340	0.830	pfam_DUF1693	pfam_DUF1693	-	no_errors	FAM46B	HGNC	ENSG00000158246				22	0	0	22	11	33.3333
TAF12	0	genome.wustl.edu	37	1	28948573	28948573	+	Silent	SNP	T	T	C			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	1	28948573	28948573	T	C	SNP	TAF12	ENST00000263974	human	ensembl	74_37	-1	known	silent	c.21	p.S7	0.998	NULL	pfam_TFIID_sub,pfam_CBFA_NFYB_domain,pfam_Histone_core_D,superfamily_Histone-fold	-	no_errors	TAF12	HGNC	ENSG00000120656				153	0	0	126	18	12.5
NKAIN1	0	genome.wustl.edu	37	1	31655387	31655387	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	1	31655387	31655387	C	A	SNP	NKAIN1	ENST00000373736	human	ensembl	74_37	-1	known	missense	c.522	p.E174D	1.000	pfam_Na/K-Atpase_Interacting	pfam_Na/K-Atpase_Interacting	-	no_errors	NKAIN1	HGNC	ENSG00000084628				106	0	0	85	13	13.2653
BAI2	0	genome.wustl.edu	37	1	32201998	32201998	+	RNA	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	1	32201998	32201998	G	A	SNP	BAI2	ENST00000465256	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.030	-	-	-	no_errors	BAI2	HGNC	ENSG00000121753				195	0	0	166	25	13.089
RNF19B	0	genome.wustl.edu	37	1	33411121	33411121	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	1	33411121	33411121	T	C	SNP	RNF19B	ENST00000373456	human	ensembl	74_37	-1	known	missense	c.1258	p.S420G	1.000	NULL	pfam_Znf_C6HC,smart_Znf_RING,smart_Znf_C6HC,pfscan_Znf_RING	-	no_errors	RNF19B	HGNC	ENSG00000116514				107	0	0	82	18	18
CSMD2	0	genome.wustl.edu	37	1	34554619	34554619	+	Silent	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	1	34554619	34554619	C	T	SNP	CSMD2	ENST00000373381	human	ensembl	74_37	-1	known	silent	c.363	p.S121	0.023	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD2	HGNC	ENSG00000121904				83	0	0	44	9	16.9811
CCDC30	0	genome.wustl.edu	37	1	43119565	43119565	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	1	43119565	43119565	G	A	SNP	CCDC30	ENST00000340612	human	ensembl	74_37	+1	known	missense	c.2218	p.A740T	0.001	NULL	NULL	-	no_errors	CCDC30	HGNC	ENSG00000186409				56	0	0	55	10	15.3846
IPO13	0	genome.wustl.edu	37	1	44426892	44426892	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	1	44426892	44426892	T	A	SNP	IPO13	ENST00000372343	human	ensembl	74_37	+1	known	missense	c.2302	p.F768I	1.000	superfamily_ARM-type_fold	pfam_Exportin-1/Importin-b-like,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	IPO13	HGNC	ENSG00000117408				503	0	0	407	68	14.3158
CYP4Z1	0	genome.wustl.edu	37	1	47560306	47560306	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	1	47560306	47560306	C	T	SNP	CYP4Z1	ENST00000334194	human	ensembl	74_37	+1	known	missense	c.841	p.R281C	0.003	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II	-	no_errors	CYP4Z1	HGNC	ENSG00000186160				81	0	0	81	13	13.8298
MYSM1	0	genome.wustl.edu	37	1	59132821	59132821	+	Silent	SNP	G	G	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	1	59132821	59132821	G	T	SNP	MYSM1	ENST00000472487	human	ensembl	74_37	-1	known	silent	c.1920	p.A640	1.000	pfam_JAB_MPN_dom,smart_JAB_MPN_dom	pfam_SWIRM,pfam_JAB_MPN_dom,pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,smart_JAB_MPN_dom,pfscan_SWIRM,pfscan_Myb-like_dom	-	no_errors	MYSM1	HGNC	ENSG00000162601				67	0	0	51	11	17.7419
DNAJC6	0	genome.wustl.edu	37	1	65851439	65851439	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	1	65851439	65851439	G	A	SNP	DNAJC6	ENST00000371069	human	ensembl	74_37	+1	known	missense	c.845	p.R282H	0.017	NULL	pfam_Tensin_phosphatase_C2-dom,pfam_DnaJ_domain,superfamily_DnaJ_domain,superfamily_C2_dom,smart_DnaJ_domain,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom,pfscan_DnaJ_domain	-	no_errors	DNAJC6	HGNC	ENSG00000116675				111	0	0	84	12	12.5
WDR78	0	genome.wustl.edu	37	1	67313177	67313177	+	Silent	SNP	A	A	G			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	1	67313177	67313177	A	G	SNP	WDR78	ENST00000371026	human	ensembl	74_37	-1	known	silent	c.1281	p.P427	0.955	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR78	HGNC	ENSG00000152763				49	0	0	48	9	15.7895
PER3	0	genome.wustl.edu	37	1	7887631	7887631	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	1	7887631	7887631	C	T	SNP	PER3	ENST00000361923	human	ensembl	74_37	+1	known	missense	c.2618	p.A873V	0.003	NULL	pfam_Period_circadian-like_C,pfam_PAS_fold_3,pfam_PAS_fold,superfamily_PAS,smart_PAS,pfscan_PAS	-	no_errors	PER3	HGNC	ENSG00000049246				279	0	0	275	25	8.33333
TNFRSF9	0	genome.wustl.edu	37	1	7995117	7995117	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	1	7995117	7995117	G	A	SNP	TNFRSF9	ENST00000377507	human	ensembl	74_37	-1	known	missense	c.500	p.P167L	0.103	NULL	pfam_TNFR/NGFR_Cys_rich_reg,smart_TNFR/NGFR_Cys_rich_reg,pfscan_TNFR/NGFR_Cys_rich_reg,prints_TNFR_9	-	no_errors	TNFRSF9	HGNC	ENSG00000049249				76	0	0	70	10	12.5
BRDT	0	genome.wustl.edu	37	1	92457862	92457862	+	Silent	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	1	92457862	92457862	C	T	SNP	BRDT	ENST00000362005	human	ensembl	74_37	+1	known	silent	c.2106	p.G702	0.000	NULL	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRDT	HGNC	ENSG00000137948				29	0	0	30	4	11.7647
ABCA4	0	genome.wustl.edu	37	1	94480241	94480241	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	1	94480241	94480241	G	A	SNP	ABCA4	ENST00000370225	human	ensembl	74_37	-1	known	missense	c.5318	p.A1773V	1.000	tigrfam_Rim_ABC_transpt	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,tigrfam_Rim_ABC_transpt	-	no_errors	ABCA4	HGNC	ENSG00000198691				187	0	0	142	25	14.9701
AGRN	0	genome.wustl.edu	37	1	979010	979010	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	1	979010	979010	G	A	SNP	AGRN	ENST00000379370	human	ensembl	74_37	+1	known	missense	c.1696	p.V566M	1.000	pfam_Kazal_dom,smart_FacI_MAC,smart_Kazal_dom	pfam_Laminin_G,pfam_Agrin_NtA,pfam_Kazal_dom,pfam_EGF_laminin,pfam_SEA_dom,pfam_EG-like_dom,superfamily_TIMP-like_OB-fold,superfamily_ConA-like_lec_gl_sf,smart_FacI_MAC,smart_Fol_N,smart_Kazal_dom,smart_EG-like_dom,smart_EGF_laminin,smart_SEA_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Agrin_NtA,pfscan_SEA_dom	-	no_errors	AGRN	HGNC	ENSG00000188157				110	0	0	74	16	17.7778
ENTPD7	0	genome.wustl.edu	37	10	101458568	101458568	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	10	101458568	101458568	C	T	SNP	ENTPD7	ENST00000370489	human	ensembl	74_37	+1	known	missense	c.1288	p.R430C	1.000	pfam_GDA1_CD39_NTPase	pfam_GDA1_CD39_NTPase	-	no_errors	ENTPD7	HGNC	ENSG00000198018				77	0	0	68	12	15
SUFU	0	genome.wustl.edu	37	10	104264032	104264032	+	Silent	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	10	104264032	104264032	C	T	SNP	SUFU	ENST00000369902	human	ensembl	74_37	+1	known	silent	c.123	p.C41	1.000	pirsf_Suppressor_of_fused_euk	pfam_SUFU_C,pfam_SUFU-like_domain,pirsf_Suppressor_of_fused_euk	-	no_errors	SUFU	HGNC	ENSG00000107882				63	0	0	32	5	13.5135
WDR37	0	genome.wustl.edu	37	10	1170951	1170951	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	10	1170951	1170951	G	A	SNP	WDR37	ENST00000263150	human	ensembl	74_37	+1	known	missense	c.1340	p.R447Q	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR37	HGNC	ENSG00000047056				50	0	0	41	10	19.6078
WDR11	0	genome.wustl.edu	37	10	122625206	122625206	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	10	122625206	122625206	G	A	SNP	WDR11	ENST00000263461	human	ensembl	74_37	+1	known	missense	c.944	p.R315H	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	WDR11	HGNC	ENSG00000120008				55	0	0	55	8	12.6984
HMX2	0	genome.wustl.edu	37	10	124908090	124908090	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	10	124908090	124908090	T	G	SNP	HMX2	ENST00000339992	human	ensembl	74_37	+1	known	missense	c.196	p.F66V	0.999	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	HMX2	HGNC	ENSG00000188816				58	0	0	34	8	19.0476
BUB3	0	genome.wustl.edu	37	10	124921806	124921806	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	10	124921806	124921806	A	C	SNP	BUB3	ENST00000368865	human	ensembl	74_37	+1	known	missense	c.631	p.S211R	1.000	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	BUB3	HGNC	ENSG00000154473				326	0	0	338	27	7.39726
ITGA8	0	genome.wustl.edu	37	10	15726071	15726071	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	10	15726071	15726071	G	T	SNP	ITGA8	ENST00000378076	human	ensembl	74_37	-1	known	missense	c.500	p.P167Q	1.000	NULL	pfam_Integrin_alpha-2,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA8	HGNC	ENSG00000077943				78	0	0	66	14	17.5
CUBN	0	genome.wustl.edu	37	10	16867001	16867001	+	Silent	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	10	16867001	16867001	G	A	SNP	CUBN	ENST00000377833	human	ensembl	74_37	-1	known	silent	c.10845	p.S3615	0.991	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_CUB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_CUB_dom,pfscan_CUB_dom,pfscan_EG-like_dom	-	no_errors	CUBN	HGNC	ENSG00000107611				70	0	0	51	7	12.069
CUBN	0	genome.wustl.edu	37	10	16911739	16911739	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	10	16911739	16911739	C	T	SNP	CUBN	ENST00000377833	human	ensembl	74_37	-1	known	missense	c.9350	p.R3117H	0.000	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_CUB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_CUB_dom,pfscan_CUB_dom,pfscan_EG-like_dom	-	no_errors	CUBN	HGNC	ENSG00000107611				237	0	0	220	22	9.09091
ARMC3	0	genome.wustl.edu	37	10	23244766	23244766	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	10	23244766	23244766	T	G	SNP	ARMC3	ENST00000298032	human	ensembl	74_37	+1	known	missense	c.197	p.L66R	1.000	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo	pfam_Armadillo,pfam_HEAT,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	ARMC3	HGNC	ENSG00000165309				68	0	0	56	9	13.8462
MPP7	0	genome.wustl.edu	37	10	28378673	28378673	+	Silent	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	10	28378673	28378673	G	A	SNP	MPP7	ENST00000337532	human	ensembl	74_37	-1	known	silent	c.1050	p.D350	0.996	superfamily_SH3_domain	pfam_GK/Ca_channel_bsu,pfam_L27_C,pfam_PDZ,pfam_SH3_2,pfam_SH3_domain,superfamily_P-loop_NTPase,superfamily_SH3_domain,superfamily_PDZ,smart_L27,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like,prints_SH3_domain	-	no_errors	MPP7	HGNC	ENSG00000150054				183	0	0	181	42	18.8341
NRP1	0	genome.wustl.edu	37	10	33475246	33475246	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	10	33475246	33475246	G	A	SNP	NRP1	ENST00000265371	human	ensembl	74_37	-1	known	missense	c.2233	p.P745S	0.997	pirsf_Neuropilin,pfam_MAM_dom,superfamily_ConA-like_lec_gl_sf,smart_MAM_dom,pfscan_MAM_dom	pirsf_Neuropilin,pfam_CUB_dom,pfam_Coagulation_fac_5/8-C_type_dom,pfam_MAM_dom,pfam_Neuropilin1_C,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl_sf,superfamily_CUB_dom,smart_CUB_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_MAM_dom,prints_MAM_dom,pfscan_CUB_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_MAM_dom	-	no_errors	NRP1	HGNC	ENSG00000099250				83	0	0	75	4	5.06329
DIP2C	0	genome.wustl.edu	37	10	435950	435950	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	10	435950	435950	C	A	SNP	DIP2C	ENST00000280886	human	ensembl	74_37	-1	known	missense	c.1578	p.Q526H	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig,pfam_DMAP1-bd	-	no_errors	DIP2C	HGNC	ENSG00000151240				109	0	0	68	18	20.9302
ZNF32	0	genome.wustl.edu	37	10	44139887	44139887	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	10	44139887	44139887	G	A	SNP	ZNF32	ENST00000374433	human	ensembl	74_37	-1	known	nonsense	c.433	p.R145*	0.147	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF32	HGNC	ENSG00000169740				103	0	0	91	17	15.7407
AGAP10	0	genome.wustl.edu	37	10	47207813	47207813	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	10	47207813	47207813	T	C	SNP	AGAP10	ENST00000413193	human	ensembl	74_37	-1	known	missense	c.683	p.H228R	1.000	NULL	pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_Pleckstrin_homology,smart_ArfGAP,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	AGAP10	HGNC	ENSG00000204172				41	0	0	32	3	8.57143
GDF2	0	genome.wustl.edu	37	10	48416403	48416403	+	Silent	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	10	48416403	48416403	C	T	SNP	GDF2	ENST00000249598	human	ensembl	74_37	-1	known	silent	c.291	p.T97	0.086	pfam_TGF-b_N	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C,prints_Inhibin_asu	-	no_errors	GDF2	HGNC	ENSG00000128802				98	0	0	75	20	21.0526
TBATA	0	genome.wustl.edu	37	10	72538305	72538305	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	10	72538305	72538305	G	A	SNP	TBATA	ENST00000545575	human	ensembl	74_37	-1	known	missense	c.482	p.A161V	0.000	NULL	NULL	-	no_errors	TBATA	HGNC	ENSG00000166220				260	0	0	264	18	6.38298
TAF3	0	genome.wustl.edu	37	10	8055710	8055710	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	10	8055710	8055710	G	A	SNP	TAF3	ENST00000344293	human	ensembl	74_37	+1	known	missense	c.2585	p.G862D	1.000	superfamily_Znf_FYVE_PHD	pfam_BTP,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,superfamily_Histone-fold,smart_BTP,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	TAF3	HGNC	ENSG00000165632				173	0	0	134	13	8.84354
LRIT2	0	genome.wustl.edu	37	10	85981787	85981787	+	Silent	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	10	85981787	85981787	C	T	SNP	LRIT2	ENST00000538192	human	ensembl	74_37	-1	known	silent	c.1572	p.P524	0.000	NULL	pfam_Ig_I-set,pfam_Leu-rich_rpt,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LRIT2	HGNC	ENSG00000204033				176	1	0.564972	149	26	14.8571
WAPAL	0	genome.wustl.edu	37	10	88230820	88230820	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	10	88230820	88230820	G	A	SNP	WAPAL	ENST00000298767	human	ensembl	74_37	-1	known	nonsense	c.2071	p.R691*	1.000	pfam_WAPL_prot,superfamily_ARM-type_fold	pfam_WAPL_prot,superfamily_ARM-type_fold	-	no_errors	WAPAL	HGNC	ENSG00000062650				94	0	0	93	14	13.0841
IFIT5	0	genome.wustl.edu	37	10	91178194	91178194	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	10	91178194	91178194	G	A	SNP	IFIT5	ENST00000371795	human	ensembl	74_37	+1	known	missense	c.1238	p.R413H	0.006	NULL	pfam_TPR_2,pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	IFIT5	HGNC	ENSG00000152778				56	0	0	48	3	5.88235
CYP2C18	0	genome.wustl.edu	37	10	96484237	96484237	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	10	96484237	96484237	C	A	SNP	CYP2C18	ENST00000285979	human	ensembl	74_37	+1	known	missense	c.1096	p.L366M	0.013	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP2C18	HGNC	ENSG00000108242				203	0	0	217	31	12.5
C10orf12	0	genome.wustl.edu	37	10	98742860	98742860	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	10	98742860	98742860	G	T	SNP	C10orf12	ENST00000286067	human	ensembl	74_37	+1	known	missense	c.1713	p.E571D	0.000	NULL	NULL	-	no_errors	C10orf12	HGNC	ENSG00000155640				109	0	0	81	11	11.9565
MSANTD4	0	genome.wustl.edu	37	11	105880396	105880396	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	11	105880396	105880396	G	A	SNP	MSANTD4	ENST00000301919	human	ensembl	74_37	-1	known	nonsense	c.904	p.R302*	0.997	NULL	NULL	-	no_errors	MSANTD4	HGNC	ENSG00000170903				180	0	0	171	12	6.55738
ATM	0	genome.wustl.edu	37	11	108164110	108164110	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	11	108164110	108164110	T	C	SNP	ATM	ENST00000278616	human	ensembl	74_37	+1	known	missense	c.4682	p.L1561P	0.135	superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_TAN,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATM	HGNC	ENSG00000149311				122	0	0	104	23	18.1102
PHLDB1	0	genome.wustl.edu	37	11	118516454	118516454	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	11	118516454	118516454	G	A	SNP	PHLDB1	ENST00000361417	human	ensembl	74_37	+1	known	missense	c.3418	p.A1140T	0.004	NULL	pfam_Pleckstrin_homology,superfamily_SMAD_FHA_domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PHLDB1	HGNC	ENSG00000019144				156	0	0	130	18	12.1622
POU2F3	0	genome.wustl.edu	37	11	120176450	120176450	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	11	120176450	120176450	T	C	SNP	POU2F3	ENST00000260264	human	ensembl	74_37	+1	known	missense	c.731	p.M244T	1.000	pfam_POU_specific,superfamily_Lambda_DNA-bd_dom,smart_POU_specific,pfscan_POU_specific,prints_POU	pfam_POU_specific,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_POU_specific,prints_POU,prints_TF_octamer	-	no_errors	POU2F3	HGNC	ENSG00000137709				132	0	0	90	22	19.6429
GRIK4	0	genome.wustl.edu	37	11	120833350	120833350	+	Silent	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	11	120833350	120833350	C	T	SNP	GRIK4	ENST00000527524	human	ensembl	74_37	+1	known	silent	c.2226	p.G742	1.000	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK4	HGNC	ENSG00000149403				128	0	0	89	9	9.18367
TECTA	0	genome.wustl.edu	37	11	120976660	120976660	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	11	120976660	120976660	A	G	SNP	TECTA	ENST00000264037	human	ensembl	74_37	+1	known	missense	c.185	p.Y62C	1.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_ZP_dom,pfam_Nidogen_extracell_dom,pfam_TIL_dom,superfamily_TIL_dom,smart_Nidogen_extracell_dom,smart_VWC_out,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EG-like_dom,smart_ZP_dom,pfscan_ZP_dom	-	no_errors	TECTA	HGNC	ENSG00000109927				306	0	0	266	30	10.1351
SORL1	0	genome.wustl.edu	37	11	121448108	121448108	+	Silent	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	11	121448108	121448108	C	T	SNP	SORL1	ENST00000260197	human	ensembl	74_37	+1	known	silent	c.3579	p.T1193	0.030	superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_Fibronectin_type3,pfam_LDLR_classB_rpt,superfamily_Fibronectin_type3,superfamily_LDrepeatLR_classA_rpt,smart_VPS10,smart_LDLR_classB_rpt,smart_LDrepeatLR_classA_rpt,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	SORL1	HGNC	ENSG00000137642				180	0	0	120	16	11.7647
OR8G1	0	genome.wustl.edu	37	11	124120777	124120777	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	11	124120777	124120777	G	A	SNP	OR8G1	ENST00000341493	human	ensembl	74_37	+1	known	missense	c.355	p.A119T	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8G1	HGNC	ENSG00000197849				209	0	0	196	37	15.8798
KIRREL3	0	genome.wustl.edu	37	11	126294613	126294613	+	Silent	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	11	126294613	126294613	G	A	SNP	KIRREL3	ENST00000525144	human	ensembl	74_37	-1	known	silent	c.2199	p.S733	1.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	KIRREL3	HGNC	ENSG00000149571				147	0	0	91	14	13.3333
MUC5B	0	genome.wustl.edu	37	11	1267503	1267503	+	Silent	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	11	1267503	1267503	G	A	SNP	MUC5B	ENST00000447027	human	ensembl	74_37	+1	known	silent	c.9402	p.T3134	0.002	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983				243	0	0	173	26	13.0653
MUC5B	0	genome.wustl.edu	37	11	1281874	1281874	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	11	1281874	1281874	T	A	SNP	MUC5B	ENST00000447027	human	ensembl	74_37	+1	known	missense	c.16994	p.I5665N	0.000	smart_Cys_knot_C,pfscan_Cys_knot_C	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983				33	0	0	34	2	5.55556
ARNTL	0	genome.wustl.edu	37	11	13393740	13393740	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	11	13393740	13393740	G	T	SNP	ARNTL	ENST00000403290	human	ensembl	74_37	+1	known	missense	c.851	p.S284I	1.000	prints_Nuc_translocat	pfam_PAS_fold,pfam_PAS_fold_3,pfam_bHLH_dom,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,smart_PAC,prints_Nuc_translocat,pfscan_PAS,pfscan_bHLH_dom,tigrfam_PAS	-	no_errors	ARNTL	HGNC	ENSG00000133794				147	0	0	146	28	16.092
ACAD8	0	genome.wustl.edu	37	11	134131749	134131749	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	11	134131749	134131749	A	G	SNP	ACAD8	ENST00000281182	human	ensembl	74_37	+1	known	missense	c.1057	p.M353V	1.000	pfam_AcylCo_DH/oxidase_C,pfam_Acyl-CoA_DH_2_C,superfamily_AcylCo_DH/oxidase_C	pfam_AcylCo_DH/oxidase_C,pfam_AcylCoA_DH/ox_N,pfam_Acyl-CoA_DH_2_C,pfam_Acyl-CoA_Oxase/DH_cen-dom,superfamily_AcylCoA_DH/oxidase_NM_dom,superfamily_AcylCo_DH/oxidase_C	-	no_errors	ACAD8	HGNC	ENSG00000151498				50	0	0	49	4	7.54717
PIK3C2A	0	genome.wustl.edu	37	11	17190440	17190440	+	Silent	SNP	A	A	G			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	11	17190440	17190440	A	G	SNP	PIK3C2A	ENST00000265970	human	ensembl	74_37	-1	known	silent	c.849	p.N283	0.988	NULL	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_PI3K_Ras-bd_dom,pfam_Phox,pfam_C2_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,superfamily_Phox,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,smart_Phox,pfscan_C2_dom,pfscan_Phox,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3C2A	HGNC	ENSG00000011405				105	0	0	107	12	10.084
ENSG00000189332	0	genome.wustl.edu	37	11	18231374	18231374	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	11	18231374	18231374	G	A	SNP	ENSG00000189332	ENST00000340135	human	ensembl	74_37	+1	novel	missense	c.160	p.A54T	0.828	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	RP11-113D6.10	Clone_based_vega_gene	ENSG00000189332				117	0	0	91	11	10.7843
E2F8	0	genome.wustl.edu	37	11	19251862	19251862	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	11	19251862	19251862	C	A	SNP	E2F8	ENST00000250024	human	ensembl	74_37	-1	known	missense	c.1284	p.Q428H	0.989	NULL	pfam_E2F_TDP	-	no_errors	E2F8	HGNC	ENSG00000129173				93	0	0	91	12	11.6505
NELL1	0	genome.wustl.edu	37	11	20907060	20907060	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	11	20907060	20907060	C	T	SNP	NELL1	ENST00000357134	human	ensembl	74_37	+1	known	missense	c.577	p.R193C	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	pfam_EGF-like_Ca-bd_dom,pfam_VWF_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_VWC_out,smart_VWF_C,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_VWF_C	-	no_errors	NELL1	HGNC	ENSG00000165973				64	0	0	58	14	19.4444
SLC17A6	0	genome.wustl.edu	37	11	22387116	22387116	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	11	22387116	22387116	A	G	SNP	SLC17A6	ENST00000263160	human	ensembl	74_37	+1	known	missense	c.772	p.M258V	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC17A6	HGNC	ENSG00000091664				135	0	0	108	14	11.4754
TRPM5	0	genome.wustl.edu	37	11	2428999	2428999	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	11	2428999	2428999	C	T	SNP	TRPM5	ENST00000452833	human	ensembl	74_37	-1	known	missense	c.2932	p.A978T	1.000	NULL	superfamily_Ankyrin_rpt-contain_dom	-	no_errors	TRPM5	HGNC	ENSG00000070985				119	0	0	88	11	11.1111
NAT10	0	genome.wustl.edu	37	11	34133754	34133754	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	11	34133754	34133754	G	C	SNP	NAT10	ENST00000257829	human	ensembl	74_37	+1	known	missense	c.356	p.G119A	1.000	pfam_DUF1726	pfam_Helicase_dom,pfam_DUF1726,superfamily_Acyl_CoA_acyltransferase,superfamily_P-loop_NTPase,pfscan_GNAT_dom	-	no_errors	NAT10	HGNC	ENSG00000135372				98	0	0	70	14	16.6667
TRAF6	0	genome.wustl.edu	37	11	36520142	36520142	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	11	36520142	36520142	A	T	SNP	TRAF6	ENST00000348124	human	ensembl	74_37	-1	known	missense	c.345	p.N115K	0.945	pirsf_TNF_rcpt--assoc_TRAF	pfam_MATH,pfam_Znf_C3HC4_RING-type,superfamily_TRAF-like,smart_Znf_RING,smart_MATH,pirsf_TNF_rcpt--assoc_TRAF,pfscan_MATH,pfscan_Znf_RING,pfscan_Znf_TRAF	-	no_errors	TRAF6	HGNC	ENSG00000175104				66	0	0	75	4	5.06329
B4GALNT4	0	genome.wustl.edu	37	11	373264	373264	+	Silent	SNP	T	T	C			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	11	373264	373264	T	C	SNP	B4GALNT4	ENST00000329962	human	ensembl	74_37	+1	known	silent	c.609	p.A203	0.075	pfam_PA14,smart_PA14	pfam_Chond_GalNAc,pfam_PA14,smart_PA14	-	no_errors	B4GALNT4	HGNC	ENSG00000182272				42	0	0	48	7	12.7273
OR52I2	0	genome.wustl.edu	37	11	4608096	4608096	+	Silent	SNP	T	T	C			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	11	4608096	4608096	T	C	SNP	OR52I2	ENST00000312614	human	ensembl	74_37	+1	known	silent	c.54	p.I18	0.161	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR52I2	HGNC	ENSG00000226288				129	0	0	113	16	12.4031
OR51F2	0	genome.wustl.edu	37	11	4843262	4843262	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	11	4843262	4843262	C	T	SNP	OR51F2	ENST00000322110	human	ensembl	74_37	+1	known	missense	c.647	p.A216V	0.989	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR51F2	HGNC	ENSG00000176925				164	0	0	142	26	15.4762
UBQLN3	0	genome.wustl.edu	37	11	5529610	5529610	+	Silent	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	11	5529610	5529610	G	A	SNP	UBQLN3	ENST00000311659	human	ensembl	74_37	-1	known	silent	c.1179	p.G393	0.325	NULL	pfam_Ubiquitin_dom,pfam_Rad60/SUMO_like,pfam_UBA/Ts_N,superfamily_UBA-like,superfamily_ARM-type_fold,smart_Ubiquitin_dom,smart_STI1_HS-bd,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Ubiquitin_supergroup	-	no_errors	UBQLN3	HGNC	ENSG00000175520				242	0	0	205	12	5.52995
MED19	0	genome.wustl.edu	37	11	57472562	57472562	+	Silent	SNP	A	A	G			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	11	57472562	57472562	A	G	SNP	MED19	ENST00000431606	human	ensembl	74_37	-1	known	silent	c.357	p.P119	0.994	pfam_Mediator_Med19_met	pfam_Mediator_Med19_met,pfam_DNA-dir_RNA_pol1_su_RPA34	-	no_errors	MED19	HGNC	ENSG00000156603				107	0	0	88	12	12
TMEM132A	0	genome.wustl.edu	37	11	60697990	60697990	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	11	60697990	60697990	T	C	SNP	TMEM132A	ENST00000005286	human	ensembl	74_37	+1	known	missense	c.875	p.V292A	1.000	NULL	NULL	-	no_errors	TMEM132A	HGNC	ENSG00000006118				298	1	0.334448	239	38	13.7184
DDB1	0	genome.wustl.edu	37	11	61071397	61071397	+	Silent	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	11	61071397	61071397	G	A	SNP	DDB1	ENST00000301764	human	ensembl	74_37	-1	known	silent	c.2772	p.G924	1.000	pfam_Cleavage/polyA-sp_fac_asu_C	pfam_Cleavage/polyA-sp_fac_asu_C	-	no_errors	DDB1	HGNC	ENSG00000167986				150	0	0	128	8	5.88235
FLRT1	0	genome.wustl.edu	37	11	63884259	63884259	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	11	63884259	63884259	G	A	SNP	FLRT1	ENST00000246841	human	ensembl	74_37	+1	known	missense	c.520	p.A174T	0.913	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_LRR-contain_N,superfamily_Fibronectin_type3,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_Fibronectin_type3	-	no_errors	FLRT1	HGNC	ENSG00000126500				47	0	0	40	10	20
NRXN2	0	genome.wustl.edu	37	11	64428414	64428414	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	11	64428414	64428414	G	A	SNP	NRXN2	ENST00000265459	human	ensembl	74_37	-1	known	missense	c.1996	p.R666C	0.497	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN2	HGNC	ENSG00000110076				62	0	0	56	10	15.1515
TIGD3	0	genome.wustl.edu	37	11	65124144	65124144	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	11	65124144	65124144	G	A	SNP	TIGD3	ENST00000309880	human	ensembl	74_37	+1	known	missense	c.865	p.A289T	0.000	pfam_DDE_SF_endonuclease_CENPB-like	pfam_HTH_CenpB_DNA-bd_dom,pfam_DDE_SF_endonuclease_CENPB-like,pfam_HTH_Psq,superfamily_Homeodomain-like,smart_HTH_CenpB_DNA-bd_dom,pfscan_HTH_Psq	-	no_errors	TIGD3	HGNC	ENSG00000173825				85	0	0	59	10	14.4928
EFEMP2	0	genome.wustl.edu	37	11	65637592	65637592	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	11	65637592	65637592	C	T	SNP	EFEMP2	ENST00000307998	human	ensembl	74_37	-1	known	missense	c.607	p.D203N	1.000	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,prints_Thrombomodulin	pfam_EGF-like_Ca-bd_dom,superfamily_TIL_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,prints_Thrombomodulin	-	no_errors	EFEMP2	HGNC	ENSG00000172638				75	0	0	47	6	11.3208
CATSPER1	0	genome.wustl.edu	37	11	65788644	65788644	+	Silent	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	11	65788644	65788644	G	A	SNP	CATSPER1	ENST00000312106	human	ensembl	74_37	-1	known	silent	c.1704	p.S568	0.999	pfam_Ion_trans_dom,pfam_PKD1_2_channel	pfam_Ion_trans_dom,pfam_PKD1_2_channel	-	no_errors	CATSPER1	HGNC	ENSG00000175294				37	0	0	29	2	6.45161
RCE1	0	genome.wustl.edu	37	11	66613485	66613485	+	Silent	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	11	66613485	66613485	G	A	SNP	RCE1	ENST00000309657	human	ensembl	74_37	+1	known	silent	c.909	p.T303	0.970	NULL	pfam_CAAX_protease	-	no_errors	RCE1	HGNC	ENSG00000173653				178	0	0	133	24	15.2866
RHOD	0	genome.wustl.edu	37	11	66838974	66838974	+	Silent	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	11	66838974	66838974	C	T	SNP	RHOD	ENST00000308831	human	ensembl	74_37	+1	known	silent	c.534	p.N178	0.340	pfam_Small_GTPase,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RHOD	HGNC	ENSG00000173156				51	0	0	31	7	18.4211
CARNS1	0	genome.wustl.edu	37	11	67187277	67187277	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	11	67187277	67187277	C	T	SNP	CARNS1	ENST00000445895	human	ensembl	74_37	+1	known	missense	c.1081	p.R361W	0.998	NULL	superfamily_PreATP-grasp_dom,superfamily_TIL_dom,pfscan_ATP-grasp	-	no_errors	CARNS1	HGNC	ENSG00000172508				13	0	0	3	4	57.1429
OR2AG1	0	genome.wustl.edu	37	11	6806831	6806831	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	11	6806831	6806831	C	T	SNP	OR2AG1	ENST00000307401	human	ensembl	74_37	+1	known	missense	c.563	p.A188V	0.693	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR2AG1	HGNC	ENSG00000170803				106	0	0	111	6	5.12821
ZNF214	0	genome.wustl.edu	37	11	7021534	7021534	+	Silent	SNP	A	A	G			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	11	7021534	7021534	A	G	SNP	ZNF214	ENST00000278314	human	ensembl	74_37	-1	known	silent	c.1380	p.H460	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF214	HGNC	ENSG00000149050				137	0	0	129	21	14
FOLH1B	0	genome.wustl.edu	37	11	89424639	89424639	+	RNA	SNP	A	A	C			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	11	89424639	89424639	A	C	SNP	FOLH1B	ENST00000525540	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	FOLH1B	HGNC	ENSG00000134612				65	0	0	69	12	14.8148
ANKS1B	0	genome.wustl.edu	37	12	100200253	100200253	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	12	100200253	100200253	G	A	SNP	ANKS1B	ENST00000329257	human	ensembl	74_37	-1	known	missense	c.598	p.L200F	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_PTB/PI_dom,pfam_SAM_2,pfam_PTB,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,smart_PTB/PI_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PTB/PI_dom,pfscan_SAM,prints_Ankyrin_rpt	-	no_errors	ANKS1B	HGNC	ENSG00000185046				77	0	0	57	4	6.55738
WNK1	0	genome.wustl.edu	37	12	1005427	1005427	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	12	1005427	1005427	C	T	SNP	WNK1	ENST00000530271	human	ensembl	74_37	+1	known	missense	c.7268	p.A2423V	0.177	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	WNK1	HGNC	ENSG00000060237				99	0	0	68	18	20.9302
FICD	0	genome.wustl.edu	37	12	108912784	108912784	+	Silent	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	12	108912784	108912784	C	T	SNP	FICD	ENST00000552695	human	ensembl	74_37	+1	known	silent	c.909	p.P303	0.008	pfam_Fido,superfamily_Fido	pfam_Fido,superfamily_Fido,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	FICD	HGNC	ENSG00000198855				58	0	0	49	7	12.5
TPCN1	0	genome.wustl.edu	37	12	113733856	113733856	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	12	113733856	113733856	G	A	SNP	TPCN1	ENST00000541517	human	ensembl	74_37	+1	known	missense	c.2642	p.R881H	1.000	NULL	pfam_Ion_trans_dom	-	no_errors	TPCN1	HGNC	ENSG00000186815				83	0	0	84	8	8.69565
RPLP0	0	genome.wustl.edu	37	12	120636391	120636391	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	12	120636391	120636391	A	G	SNP	RPLP0	ENST00000228306	human	ensembl	74_37	-1	known	missense	c.617	p.I206T	1.000	NULL	pfam_Ribosomal_L10/acidic_P0,pfam_Ribosomal_L10/L12	-	no_errors	RPLP0	HGNC	ENSG00000089157				88	0	0	70	11	13.5802
GPRC5A	0	genome.wustl.edu	37	12	13065520	13065520	+	RNA	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	12	13065520	13065520	C	T	SNP	GPRC5A	ENST00000542056	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GPRC5A	HGNC	ENSG00000013588				70	0	0	44	11	20
GPR133	0	genome.wustl.edu	37	12	131476867	131476867	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	12	131476867	131476867	A	G	SNP	GPR133	ENST00000261654	human	ensembl	74_37	+1	known	missense	c.896	p.Y299C	0.968	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl_sf,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR133	HGNC	ENSG00000111452				208	0	0	188	12	6
POLE	0	genome.wustl.edu	37	12	133254218	133254218	+	Silent	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	12	133254218	133254218	G	A	SNP	POLE	ENST00000320574	human	ensembl	74_37	-1	known	silent	c.666	p.R222	0.950	pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom	pfam_DNA_pol_e_suA_C,pfam_DNA-dir_DNA_pol_B_exonuc,pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_3'-5'_exonuclease_PolB-like,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B	-	no_errors	POLE	HGNC	ENSG00000177084				60	0	0	45	5	10
GOLT1B	0	genome.wustl.edu	37	12	21665273	21665273	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	12	21665273	21665273	T	C	SNP	GOLT1B	ENST00000229314	human	ensembl	74_37	+1	known	missense	c.341	p.V114A	1.000	pfam_Vesicle_transpt_Got1/SFT2	pfam_Vesicle_transpt_Got1/SFT2	-	no_errors	GOLT1B	HGNC	ENSG00000111711				226	1	0.440529	219	28	11.336
ABCC9	0	genome.wustl.edu	37	12	22035726	22035726	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	12	22035726	22035726	C	T	SNP	ABCC9	ENST00000261200	human	ensembl	74_37	-1	known	missense	c.1993	p.A665T	0.000	superfamily_P-loop_NTPase	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,prints_Sulphorea_rcpt,prints_Sulphonylurea_rcpt-2	-	no_errors	ABCC9	HGNC	ENSG00000069431				150	0	0	132	23	14.8387
KRAS	0	genome.wustl.edu	37	12	25398285	25398285	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	12	25398285	25398285	C	A	SNP	KRAS	ENST00000256078	human	ensembl	74_37	-1	known	missense	c.34	p.G12C	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	KRAS	HGNC	ENSG00000133703				27	0	0	17	4	19.0476
ITPR2	0	genome.wustl.edu	37	12	26784907	26784907	+	Silent	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	12	26784907	26784907	G	A	SNP	ITPR2	ENST00000381340	human	ensembl	74_37	-1	known	silent	c.2826	p.S942	0.206	superfamily_ARM-type_fold	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ARM-type_fold,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR2	HGNC	ENSG00000123104				196	0	0	178	29	14.0097
ITPR2	0	genome.wustl.edu	37	12	26839488	26839488	+	Silent	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	12	26839488	26839488	C	T	SNP	ITPR2	ENST00000381340	human	ensembl	74_37	-1	known	silent	c.1074	p.P358	0.280	pfam_MIR_motif,superfamily_MIR_motif,smart_MIR_motif	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ARM-type_fold,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR2	HGNC	ENSG00000123104				141	0	0	138	22	13.75
MED21	0	genome.wustl.edu	37	12	27181274	27181274	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	12	27181274	27181274	G	T	SNP	MED21	ENST00000282892	human	ensembl	74_37	+1	known	missense	c.315	p.E105D	1.000	pfam_Mediator_Med21	pfam_Mediator_Med21	-	no_errors	MED21	HGNC	ENSG00000152944				206	0	0	188	28	12.963
SYT10	0	genome.wustl.edu	37	12	33579288	33579288	+	Silent	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	12	33579288	33579288	C	T	SNP	SYT10	ENST00000228567	human	ensembl	74_37	-1	known	silent	c.294	p.Q98	0.875	NULL	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom,prints_Synaptotagmin,prints_C2_dom	-	no_errors	SYT10	HGNC	ENSG00000110975				87	0	0	68	9	11.6883
LRRK2	0	genome.wustl.edu	37	12	40672043	40672043	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	12	40672043	40672043	G	T	SNP	LRRK2	ENST00000298910	human	ensembl	74_37	+1	known	nonsense	c.2221	p.G741*	0.000	superfamily_ARM-type_fold	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_MIRO-like,pfam_Small_GTPase,pfam_Leu-rich_rpt,pfam_Small_GTPase_ARF/SAR,superfamily_Kinase-like_dom,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,superfamily_WD40_repeat_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Small_GTPase_Rab_type,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,prints_Small_GTPase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	LRRK2	HGNC	ENSG00000188906				137	0	0	120	22	15.493
PDZRN4	0	genome.wustl.edu	37	12	41967251	41967251	+	Silent	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	12	41967251	41967251	G	A	SNP	PDZRN4	ENST00000402685	human	ensembl	74_37	+1	known	silent	c.2670	p.K890	1.000	NULL	pfam_PDZ,superfamily_PDZ,superfamily_TRAF-like,smart_Znf_RING,smart_PDZ,pfscan_PDZ,pfscan_Znf_RING	-	no_errors	PDZRN4	HGNC	ENSG00000165966				152	1	0.653595	135	13	8.78378
GXYLT1	0	genome.wustl.edu	37	12	42491296	42491296	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	12	42491296	42491296	T	C	SNP	GXYLT1	ENST00000398675	human	ensembl	74_37	-1	known	missense	c.1109	p.Y370C	1.000	NULL	pfam_Glyco_trans_8	-	no_errors	GXYLT1	HGNC	ENSG00000151233				185	0	0	168	21	11.1111
ARID2	0	genome.wustl.edu	37	12	46246350	46246350	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	12	46246350	46246350	C	T	SNP	ARID2	ENST00000334344	human	ensembl	74_37	+1	known	nonsense	c.4444	p.Q1482*	1.000	NULL	pfam_ARID/BRIGHT_DNA-bd,pfam_DNA-bd_RFX,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID2	HGNC	ENSG00000189079				169	0	0	143	17	10.625
CCNT1	0	genome.wustl.edu	37	12	49087792	49087792	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	12	49087792	49087792	G	A	SNP	CCNT1	ENST00000261900	human	ensembl	74_37	-1	known	missense	c.1205	p.A402V	0.998	NULL	pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	CCNT1	HGNC	ENSG00000129315				376	0	0	323	62	16.1039
PRPF40B	0	genome.wustl.edu	37	12	50029022	50029022	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	12	50029022	50029022	G	A	SNP	PRPF40B	ENST00000548825	human	ensembl	74_37	+1	known	missense	c.1142	p.R381H	1.000	superfamily_FF_domain	pfam_FF_domain,pfam_WW_dom,superfamily_FF_domain,superfamily_WW_dom,smart_WW_dom,smart_FF_domain,pfscan_WW_dom	-	no_errors	PRPF40B	HGNC	ENSG00000110844				104	0	0	72	13	15.2941
KRT1	0	genome.wustl.edu	37	12	53069130	53069130	+	Silent	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	12	53069130	53069130	G	A	SNP	KRT1	ENST00000252244	human	ensembl	74_37	-1	known	silent	c.1782	p.G594	0.027	NULL	pfam_IF,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT1	HGNC	ENSG00000167768				45	0	0	38	8	17.3913
NTF3	0	genome.wustl.edu	37	12	5603459	5603459	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	12	5603459	5603459	C	T	SNP	NTF3	ENST00000423158	human	ensembl	74_37	+1	known	missense	c.118	p.P40S	1.000	pirsf_Nerve_growth_factor-like	pfam_Nerve_growth_factor-rel,smart_Nerve_growth_factor-rel,pirsf_Nerve_growth_factor-like,pfscan_Nerve_growth_factor-rel,prints_Nerve_growth_factor-rel,prints_Neurotrophin-3	-	no_errors	NTF3	HGNC	ENSG00000185652				111	0	0	95	15	13.6364
NTF3	0	genome.wustl.edu	37	12	5603725	5603725	+	Silent	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	12	5603725	5603725	G	A	SNP	NTF3	ENST00000423158	human	ensembl	74_37	+1	known	silent	c.384	p.P128	0.119	pirsf_Nerve_growth_factor-like	pfam_Nerve_growth_factor-rel,smart_Nerve_growth_factor-rel,pirsf_Nerve_growth_factor-like,pfscan_Nerve_growth_factor-rel,prints_Nerve_growth_factor-rel,prints_Neurotrophin-3	-	no_errors	NTF3	HGNC	ENSG00000185652				122	0	0	102	9	8.10811
AVPR1A	0	genome.wustl.edu	37	12	63544484	63544484	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	12	63544484	63544484	C	T	SNP	AVPR1A	ENST00000299178	human	ensembl	74_37	-1	known	missense	c.133	p.V45M	0.174	prints_Vprs_V1A_rcpt	pfam_GPCR_Rhodpsn,pfam_DUF1856,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_Vprs_V1A_rcpt,prints_Vasoprsn_rcpt,prints_GPCR_Rhodpsn	-	no_errors	AVPR1A	HGNC	ENSG00000166148				84	0	0	54	10	15.625
XPOT	0	genome.wustl.edu	37	12	64812728	64812728	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	12	64812728	64812728	A	G	SNP	XPOT	ENST00000332707	human	ensembl	74_37	+1	known	missense	c.343	p.T115A	1.000	pfam_Exportin-1/Importin-b-like,superfamily_ARM-type_fold	pfam_Exportin-1/Importin-b-like,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N	-	no_errors	XPOT	HGNC	ENSG00000184575				128	1	0.775194	109	6	5.21739
XPOT	0	genome.wustl.edu	37	12	64812733	64812733	+	Silent	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	12	64812733	64812733	G	A	SNP	XPOT	ENST00000332707	human	ensembl	74_37	+1	known	silent	c.348	p.E116	0.939	pfam_Exportin-1/Importin-b-like,superfamily_ARM-type_fold	pfam_Exportin-1/Importin-b-like,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N	-	no_errors	XPOT	HGNC	ENSG00000184575				129	1	0.769231	114	6	5
LEMD3	0	genome.wustl.edu	37	12	65609822	65609822	+	Silent	SNP	A	A	G			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	12	65609822	65609822	A	G	SNP	LEMD3	ENST00000308330	human	ensembl	74_37	+1	known	silent	c.1626	p.A542	1.000	pfam_Inner-Nucl-membr_MAN1	pfam_Inner-Nucl-membr_MAN1,pfam_LEM_dom,superfamily_LEM/LEM-like_dom,smart_LEM_dom,pfscan_LEM_dom	-	no_errors	LEMD3	HGNC	ENSG00000174106				80	0	0	67	7	9.45946
CD4	0	genome.wustl.edu	37	12	6925311	6925311	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	12	6925311	6925311	A	T	SNP	CD4	ENST00000011653	human	ensembl	74_37	+1	known	missense	c.697	p.T233S	0.070	pfam_CD4-extracel,smart_Ig_sub	pfam_CD4-extracel,pfam_Ig_C2-set,pfam_Tcell_CD4_Cterm,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Ig_I-set,pfam_NK_rcpt_2B4_Ig_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom,prints_Ag_CD4	-	no_errors	CD4	HGNC	ENSG00000010610				176	0	0	156	34	17.8947
CD163L1	0	genome.wustl.edu	37	12	7531592	7531592	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	12	7531592	7531592	C	T	SNP	CD163L1	ENST00000313599	human	ensembl	74_37	-1	known	missense	c.2353	p.A785T	0.993	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR,prints_SRCR	-	no_errors	CD163L1	HGNC	ENSG00000177675				124	0	0	143	9	5.92105
SLC2A14	0	genome.wustl.edu	37	12	7981304	7981304	+	Silent	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	12	7981304	7981304	C	T	SNP	SLC2A14	ENST00000396589	human	ensembl	74_37	-1	known	silent	c.741	p.T247	0.000	pfam_Sub_transporter,pfam_MFS,pfam_Folate_carrier,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	pfam_Sub_transporter,pfam_MFS,pfam_Folate_carrier,superfamily_MFS_dom_general_subst_transpt,prints_Sugar/inositol_transpt,prints_Glc_transpt_3,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	-	no_errors	SLC2A14	HGNC	ENSG00000173262				123	0	0	93	22	19.1304
ELK3	0	genome.wustl.edu	37	12	96641453	96641453	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	12	96641453	96641453	G	A	SNP	ELK3	ENST00000228741	human	ensembl	74_37	+1	known	missense	c.943	p.A315T	1.000	NULL	pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	ELK3	HGNC	ENSG00000111145				26	0	0	16	6	27.2727
KDELC1	0	genome.wustl.edu	37	13	103443452	103443452	+	Silent	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	13	103443452	103443452	C	T	SNP	KDELC1	ENST00000376004	human	ensembl	74_37	-1	known	silent	c.882	p.T294	0.192	pfam_LipoPS_modifying,smart_LipoPS_modifying	pfam_LipoPS_modifying,pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,smart_LipoPS_modifying,pfscan_Filamin/ABP280_repeat-like	-	no_errors	KDELC1	HGNC	ENSG00000134901				135	0	0	120	14	10.4478
F7	0	genome.wustl.edu	37	13	113771902	113771902	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	13	113771902	113771902	C	T	SNP	F7	ENST00000375581	human	ensembl	74_37	+1	known	missense	c.797	p.A266V	0.007	pirsf_Pept_S1A_FX,pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pirsf_Pept_S1A_FX,pfam_Peptidase_S1,pfam_GLA_domain,pfam_Peptidase_S1A_nudel,pfam_EG-like_dom,superfamily_Trypsin-like_Pept_dom,superfamily_GLA_domain,smart_GLA_domain,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Peptidase_S1,prints_Peptidase_S1A,prints_GLA_domain,pfscan_EG-like_dom,pfscan_GLA_domain,pfscan_Peptidase_S1	-	no_errors	F7	HGNC	ENSG00000057593				194	0	0	165	27	14.0625
KL	0	genome.wustl.edu	37	13	33591184	33591184	+	Silent	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	13	33591184	33591184	C	T	SNP	KL	ENST00000380099	human	ensembl	74_37	+1	known	silent	c.606	p.D202	0.863	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_1	-	no_errors	KL	HGNC	ENSG00000133116				21	0	0	22	4	15.3846
ENOX1	0	genome.wustl.edu	37	13	43918697	43918697	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	13	43918697	43918697	G	A	SNP	ENOX1	ENST00000261488	human	ensembl	74_37	-1	known	missense	c.1013	p.A338V	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	ENOX1	HGNC	ENSG00000120658				120	0	0	94	6	6
RNF219	0	genome.wustl.edu	37	13	79191059	79191059	+	Silent	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	13	79191059	79191059	G	A	SNP	RNF219	ENST00000282003	human	ensembl	74_37	-1	known	silent	c.837	p.G279	0.865	NULL	pfscan_Znf_RING	-	no_errors	RNF219	HGNC	ENSG00000152193				139	0	0	109	17	13.4921
DOCK9	0	genome.wustl.edu	37	13	99449686	99449686	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	13	99449686	99449686	G	A	SNP	DOCK9	ENST00000339416	human	ensembl	74_37	-1	known	nonsense	c.5977	p.R1993*	1.000	pfam_DOCK_C	pfam_DOCK_C,pfam_DOCK_C/D_N,pfam_Pleckstrin_homology,superfamily_ARM-type_fold,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK9	HGNC	ENSG00000088387				42	0	0	36	9	20
CEP170B	0	genome.wustl.edu	37	14	105349144	105349144	+	Silent	SNP	C	C	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	14	105349144	105349144	C	A	SNP	CEP170B	ENST00000453495	human	ensembl	74_37	+1	known	silent	c.552	p.A184	0.978	NULL	pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	CEP170B	HGNC	ENSG00000099814				49	0	0	25	5	16.6667
AHNAK2	0	genome.wustl.edu	37	14	105411774	105411774	+	Silent	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	14	105411774	105411774	C	T	SNP	AHNAK2	ENST00000333244	human	ensembl	74_37	-1	known	silent	c.10014	p.A3338	0.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567				406	0	0	331	42	11.2601
LRRC16B	0	genome.wustl.edu	37	14	24532580	24532580	+	Silent	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	14	24532580	24532580	C	T	SNP	LRRC16B	ENST00000342740	human	ensembl	74_37	+1	known	silent	c.2817	p.I939	0.980	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC16B	HGNC	ENSG00000186648				96	0	0	84	18	17.6471
RALGAPA1	0	genome.wustl.edu	37	14	36159176	36159176	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	14	36159176	36159176	G	A	SNP	RALGAPA1	ENST00000258840	human	ensembl	74_37	-1	known	missense	c.2441	p.T814I	1.000	NULL	pfam_Rap_GAP_dom,superfamily_ARM-type_fold,pfscan_Rap_GAP_dom	-	no_errors	RALGAPA1	HGNC	ENSG00000174373				107	0	0	109	15	12.0968
RALGAPA1	0	genome.wustl.edu	37	14	36194349	36194349	+	Silent	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	14	36194349	36194349	G	A	SNP	RALGAPA1	ENST00000258840	human	ensembl	74_37	-1	known	silent	c.1747	p.L583	1.000	NULL	pfam_Rap_GAP_dom,superfamily_ARM-type_fold,pfscan_Rap_GAP_dom	-	no_errors	RALGAPA1	HGNC	ENSG00000174373				104	0	0	90	9	9.09091
TTC6	0	genome.wustl.edu	37	14	38296552	38296552	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	14	38296552	38296552	A	G	SNP	TTC6	ENST00000478811	human	ensembl	74_37	+1	known	missense	c.1472	p.H491R	1.000	pfscan_TPR-contain_dom	pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC6	HGNC	ENSG00000139865				246	0	0	225	16	6.639
SSTR1	0	genome.wustl.edu	37	14	38679601	38679601	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	14	38679601	38679601	G	A	SNP	SSTR1	ENST00000267377	human	ensembl	74_37	+1	known	missense	c.1007	p.R336H	1.000	pfam_7TM_GPCR_olfarory/Srsx,prints_Somatstn_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Somatstn_rcpt_1,prints_GPCR_Rhodpsn,prints_Somatstn_rcpt,prints_Opioid_rcpt,prints_NPY_rcpt,prints_Neuropept_B/W_rcpt	-	no_errors	SSTR1	HGNC	ENSG00000139874				113	0	0	149	12	7.45342
SYNE2	0	genome.wustl.edu	37	14	64630227	64630227	+	Silent	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	14	64630227	64630227	G	A	SNP	SYNE2	ENST00000358025	human	ensembl	74_37	+1	known	silent	c.16407	p.P5469	0.000	NULL	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654				112	0	0	90	21	18.9189
SIPA1L1	0	genome.wustl.edu	37	14	72054698	72054698	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	14	72054698	72054698	C	T	SNP	SIPA1L1	ENST00000555818	human	ensembl	74_37	+1	known	missense	c.109	p.R37W	1.000	NULL	pfam_DUF3401,pfam_Rap_GAP_dom,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP_dom	-	no_errors	SIPA1L1	HGNC	ENSG00000197555				172	0	0	157	34	17.801
RGS6	0	genome.wustl.edu	37	14	73029132	73029132	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	14	73029132	73029132	C	T	SNP	RGS6	ENST00000553525	human	ensembl	74_37	+1	known	missense	c.1430	p.S477L	1.000	NULL	pfam_RGS_dom,pfam_G-protein_gamma-like_dom,pfam_DEP_dom,superfamily_Regulat_G_prot_signal_superfam,superfamily_G-protein_gamma-like_dom,smart_DEP_dom,smart_G-protein_gamma-like_dom,smart_Regulat_G_prot_signal_superfam,pfscan_DEP_dom,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS6	HGNC	ENSG00000182732				77	0	0	55	7	11.2903
PAPLN	0	genome.wustl.edu	37	14	73718470	73718470	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	14	73718470	73718470	C	T	SNP	PAPLN	ENST00000427855	human	ensembl	74_37	+1	known	missense	c.769	p.R257W	0.997	pfam_ADAM_spacer1	pfam_Ig_I-set,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_Prot_inh_Kunz-m,pfam_PLAC,superfamily_Prot_inh_Kunz-m,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_Prot_inh_Kunz-m,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Prot_inh_Kunz-m,pfscan_Ig-like_dom,prints_Peptidase_M12B_ADAM-TS,prints_Prot_inh_Kunz-m	-	no_errors	PAPLN	HGNC	ENSG00000100767				73	0	0	82	19	18.8119
ELMSAN1	0	genome.wustl.edu	37	14	74205491	74205491	+	Silent	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	14	74205491	74205491	C	T	SNP	ELMSAN1	ENST00000286523	human	ensembl	74_37	-1	known	silent	c.1221	p.S407	0.001	NULL	pfam_ELM2_dom,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_ELM2_dom	-	no_errors	ELMSAN1	HGNC	ENSG00000156030				34	0	0	28	8	22.2222
TMED8	0	genome.wustl.edu	37	14	77808279	77808279	+	Silent	SNP	A	A	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	14	77808279	77808279	A	T	SNP	TMED8	ENST00000216468	human	ensembl	74_37	-1	known	silent	c.813	p.G271	0.642	superfamily_GOLD,pfscan_GOLD	superfamily_GOLD,pfscan_GOLD	-	no_errors	TMED8	HGNC	ENSG00000100580				64	0	0	54	12	18.1818
FAM181A	0	genome.wustl.edu	37	14	94395003	94395003	+	Silent	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	14	94395003	94395003	G	A	SNP	FAM181A	ENST00000267594	human	ensembl	74_37	+1	known	silent	c.558	p.Q186	0.956	NULL	NULL	-	no_errors	FAM181A	HGNC	ENSG00000140067				60	0	0	52	9	14.7541
RYR3	0	genome.wustl.edu	37	15	33873841	33873841	+	Silent	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	15	33873841	33873841	C	T	SNP	RYR3	ENST00000389232	human	ensembl	74_37	+1	known	silent	c.1570	p.L524	0.989	pfam_Ca-rel_channel	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838				134	0	0	124	10	7.46269
MGA	0	genome.wustl.edu	37	15	42005615	42005615	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	15	42005615	42005615	G	T	SNP	MGA	ENST00000219905	human	ensembl	74_37	+1	known	missense	c.3351	p.E1117D	0.258	NULL	pfam_TF_T-box,pfam_bHLH_dom,superfamily_p53-like_TF_DNA-bd,superfamily_bHLH_dom,smart_TF_T-box,smart_bHLH_dom,pfscan_bHLH_dom,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	MGA	HGNC	ENSG00000174197				13	0	0	10	5	33.3333
TP53BP1	0	genome.wustl.edu	37	15	43714236	43714236	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	15	43714236	43714236	T	G	SNP	TP53BP1	ENST00000382044	human	ensembl	74_37	-1	known	missense	c.3917	p.D1306A	1.000	NULL	pfam_53-BP1_Tudor,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	TP53BP1	HGNC	ENSG00000067369				136	0	0	96	27	21.9512
FGF7	0	genome.wustl.edu	37	15	49776672	49776672	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	15	49776672	49776672	G	A	SNP	FGF7	ENST00000267843	human	ensembl	74_37	+1	known	missense	c.556	p.A186T	0.981	pfam_Fibroblast_GF_fam,superfamily_Cytokine_IL1-like,smart_Fibroblast_GF_fam,prints_IL-1_fam/FGF_fam	pfam_Fibroblast_GF_fam,superfamily_Cytokine_IL1-like,smart_Fibroblast_GF_fam,prints_Fibroblast_GF_fam,prints_IL-1_fam/FGF_fam	-	no_errors	FGF7	HGNC	ENSG00000140285				25	0	0	20	6	23.0769
CYP19A1	0	genome.wustl.edu	37	15	51514616	51514616	+	Silent	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	15	51514616	51514616	G	A	SNP	CYP19A1	ENST00000260433	human	ensembl	74_37	-1	known	silent	c.558	p.D186	0.992	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP19A1	HGNC	ENSG00000137869				83	0	0	84	9	9.67742
TLN2	0	genome.wustl.edu	37	15	63040619	63040619	+	Silent	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	15	63040619	63040619	C	T	SNP	TLN2	ENST00000306829	human	ensembl	74_37	+1	known	silent	c.4095	p.C1365	1.000	NULL	pfam_Talin_cent,pfam_ILWEQ_dom,pfam_Vinculin-bd_dom,pfam_FERM_N,pfam_FERM_central,pfam_Insln_rcpt_S1,superfamily_Talin_cent,superfamily_Vinculin/catenin,superfamily_FERM_central,smart_Band_41_domain,smart_ILWEQ_dom,pfscan_FERM_domain,pfscan_ILWEQ_dom	-	no_errors	TLN2	HGNC	ENSG00000171914				129	0	0	124	10	7.46269
TLN2	0	genome.wustl.edu	37	15	63069014	63069014	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	15	63069014	63069014	G	A	SNP	TLN2	ENST00000306829	human	ensembl	74_37	+1	known	missense	c.5419	p.A1807T	1.000	superfamily_Vinculin/catenin	pfam_Talin_cent,pfam_ILWEQ_dom,pfam_Vinculin-bd_dom,pfam_FERM_N,pfam_FERM_central,pfam_Insln_rcpt_S1,superfamily_Talin_cent,superfamily_Vinculin/catenin,superfamily_FERM_central,smart_Band_41_domain,smart_ILWEQ_dom,pfscan_FERM_domain,pfscan_ILWEQ_dom	-	no_errors	TLN2	HGNC	ENSG00000171914				79	0	0	70	6	7.89474
CILP	0	genome.wustl.edu	37	15	65489719	65489719	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	15	65489719	65489719	G	A	SNP	CILP	ENST00000261883	human	ensembl	74_37	-1	known	nonsense	c.2905	p.R969*	0.995	NULL	pfam_Ig_I-set,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,superfamily_CarboxyPept-like_regulatory,smart_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom	-	no_errors	CILP	HGNC	ENSG00000138615				121	0	0	89	23	20.5357
VWA9	0	genome.wustl.edu	37	15	65871779	65871779	+	Silent	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	15	65871779	65871779	C	T	SNP	VWA9	ENST00000567744	human	ensembl	74_37	-1	known	silent	c.1632	p.T544	0.969	NULL	NULL	-	no_errors	VWA9	HGNC	ENSG00000138614				142	0	0	150	25	14.2857
VWA9	0	genome.wustl.edu	37	15	65891302	65891302	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	15	65891302	65891302	G	A	SNP	VWA9	ENST00000569004	human	ensembl	74_37	-1	known	missense	c.449	p.A150V	1.000	NULL	NULL	-	no_errors	VWA9	HGNC	ENSG00000138614				66	0	0	65	15	18.75
FEM1B	0	genome.wustl.edu	37	15	68582994	68582994	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	15	68582994	68582994	T	C	SNP	FEM1B	ENST00000306917	human	ensembl	74_37	+1	known	missense	c.1298	p.V433A	0.042	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	FEM1B	HGNC	ENSG00000169018				83	0	0	91	22	19.469
THSD4	0	genome.wustl.edu	37	15	72020961	72020961	+	Silent	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	15	72020961	72020961	C	T	SNP	THSD4	ENST00000261862	human	ensembl	74_37	+1	known	silent	c.1431	p.G477	0.003	pfam_ADAM_spacer1	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD4	HGNC	ENSG00000187720				192	0	0	176	22	11.1111
GOLGA6B	0	genome.wustl.edu	37	15	72956779	72956779	+	Silent	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	15	72956779	72956779	G	A	SNP	GOLGA6B	ENST00000421285	human	ensembl	74_37	+1	known	silent	c.1428	p.E476	0.999	NULL	NULL	-	no_errors	GOLGA6B	HGNC	ENSG00000215186				61	0	0	63	5	7.35294
PML	0	genome.wustl.edu	37	15	74315644	74315644	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	15	74315644	74315644	C	T	SNP	PML	ENST00000268058	human	ensembl	74_37	+1	known	missense	c.1078	p.R360C	0.233	pfam_DUF3583	pfam_DUF3583,pfam_Znf_B-box,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	PML	HGNC	ENSG00000140464				58	0	0	41	11	21.1538
AKAP13	0	genome.wustl.edu	37	15	86261259	86261259	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	15	86261259	86261259	A	G	SNP	AKAP13	ENST00000361243	human	ensembl	74_37	+1	known	missense	c.5882	p.E1961G	1.000	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_Ankyrin_rpt-contain_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain	-	no_errors	AKAP13	HGNC	ENSG00000170776				72	0	0	58	7	10.7692
HAPLN3	0	genome.wustl.edu	37	15	89424594	89424594	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	15	89424594	89424594	G	T	SNP	HAPLN3	ENST00000359595	human	ensembl	74_37	-1	known	missense	c.487	p.L163M	1.000	smart_Ig_sub,pfscan_Ig-like_dom	pfam_Link,pfam_Ig_V-set,superfamily_C-type_lectin_fold,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Link,pfscan_Link,pfscan_Ig-like_dom,prints_Link	-	no_errors	HAPLN3	HGNC	ENSG00000140511				113	0	0	105	9	7.89474
TICRR	0	genome.wustl.edu	37	15	90125982	90125982	+	Silent	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	15	90125982	90125982	C	T	SNP	TICRR	ENST00000268138	human	ensembl	74_37	+1	known	silent	c.720	p.G240	0.035	NULL	NULL	-	no_errors	TICRR	HGNC	ENSG00000140534				142	0	0	118	19	13.8686
MAN2A2	0	genome.wustl.edu	37	15	91454123	91454123	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	15	91454123	91454123	G	T	SNP	MAN2A2	ENST00000360468	human	ensembl	74_37	+1	known	missense	c.1807	p.A603S	0.999	NULL	pfam_Glyco_hydro_38_N,pfam_Glyco_hydro_38_C,pfam_Glyco_hydro_38_cen_dom,superfamily_Gal_mutarotase_SF_dom,superfamily_Glyco_hydro/deAcase_b/a-brl,smart_Glyco_hydro_38_cen_dom	-	no_errors	MAN2A2	HGNC	ENSG00000196547				98	0	0	72	14	16.2791
CPPED1	0	genome.wustl.edu	37	16	12875064	12875064	+	Silent	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	16	12875064	12875064	G	A	SNP	CPPED1	ENST00000381774	human	ensembl	74_37	-1	known	silent	c.267	p.G89	0.980	pfam_PEstase_dom	pfam_PEstase_dom	-	no_errors	CPPED1	HGNC	ENSG00000103381				31	0	0	22	8	26.6667
VWA3A	0	genome.wustl.edu	37	16	22144335	22144335	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	16	22144335	22144335	G	A	SNP	VWA3A	ENST00000389398	human	ensembl	74_37	+1	known	missense	c.1987	p.A663T	0.999	NULL	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	VWA3A	HGNC	ENSG00000175267				52	0	0	27	8	22.8571
TNRC6A	0	genome.wustl.edu	37	16	24802619	24802619	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	16	24802619	24802619	G	A	SNP	TNRC6A	ENST00000395799	human	ensembl	74_37	+1	known	missense	c.2656	p.G886S	1.000	NULL	pfam_Argonaute_hook_dom,superfamily_UBA-like	-	no_errors	TNRC6A	HGNC	ENSG00000090905				70	0	0	60	13	17.8082
ARHGAP17	0	genome.wustl.edu	37	16	24946807	24946807	+	Silent	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	16	24946807	24946807	C	T	SNP	ARHGAP17	ENST00000289968	human	ensembl	74_37	-1	known	silent	c.1878	p.P626	0.971	NULL	pfam_BAR_dom,pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_BAR_dom,smart_RhoGAP_dom,pfscan_BAR_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP17	HGNC	ENSG00000140750				27	0	0	19	4	17.3913
CCNF	0	genome.wustl.edu	37	16	2499405	2499405	+	Silent	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	16	2499405	2499405	C	T	SNP	CCNF	ENST00000397066	human	ensembl	74_37	+1	known	silent	c.1341	p.Y447	0.000	pfam_Cyclin_C-dom,superfamily_Cyclin-like,smart_Cyclin-like	pfam_Cyclin_N,pfam_Cyclin_C-dom,pfam_F-box_dom,superfamily_Cyclin-like,superfamily_F-box_dom,smart_F-box_dom,smart_Cyclin-like,pfscan_F-box_dom	-	no_errors	CCNF	HGNC	ENSG00000162063				76	0	0	73	12	14.1176
ZNF629	0	genome.wustl.edu	37	16	30794465	30794465	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	16	30794465	30794465	G	A	SNP	ZNF629	ENST00000262525	human	ensembl	74_37	-1	known	missense	c.1184	p.T395M	0.998	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF629	HGNC	ENSG00000102870				49	0	0	49	9	15.5172
C16orf98	0	genome.wustl.edu	37	16	31214142	31214142	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	16	31214142	31214142	T	C	SNP	C16orf98	ENST00000561916	human	ensembl	74_37	+1	putative	missense	c.368	p.V123A	0.000	NULL	NULL	-	no_errors	C16orf98	HGNC	ENSG00000261359				8	0	0	13	4	23.5294
N4BP1	0	genome.wustl.edu	37	16	48594880	48594880	+	Silent	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	16	48594880	48594880	G	A	SNP	N4BP1	ENST00000262384	human	ensembl	74_37	-1	known	silent	c.1674	p.C558	0.029	NULL	pfam_RNase_Zc3h12	-	no_errors	N4BP1	HGNC	ENSG00000102921				190	0	0	171	25	12.7551
CBLN1	0	genome.wustl.edu	37	16	49315161	49315161	+	Silent	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	16	49315161	49315161	G	A	SNP	CBLN1	ENST00000219197	human	ensembl	74_37	-1	known	silent	c.216	p.H72	1.000	pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q	pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	CBLN1	HGNC	ENSG00000102924				101	0	0	69	7	9.21053
CHD9	0	genome.wustl.edu	37	16	53191220	53191220	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	16	53191220	53191220	G	A	SNP	CHD9	ENST00000398510	human	ensembl	74_37	+1	known	missense	c.1219	p.E407K	1.000	NULL	pfam_SNF2_N,pfam_BRK_domain,pfam_Chromo_domain,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD9	HGNC	ENSG00000177200				26	0	0	26	10	27.7778
C16orf80	0	genome.wustl.edu	37	16	58149340	58149340	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	16	58149340	58149340	G	A	SNP	C16orf80	ENST00000262498	human	ensembl	74_37	-1	known	missense	c.298	p.R100C	1.000	pfam_DUF667	pfam_DUF667	-	no_errors	C16orf80	HGNC	ENSG00000070761				76	0	0	63	5	7.35294
DPEP3	0	genome.wustl.edu	37	16	68013621	68013621	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	16	68013621	68013621	A	G	SNP	DPEP3	ENST00000268793	human	ensembl	74_37	-1	known	missense	c.410	p.L137P	0.990	pfam_Peptidase_M19	pfam_Peptidase_M19	-	no_errors	DPEP3	HGNC	ENSG00000141096				54	0	0	37	6	13.9535
DUS2	0	genome.wustl.edu	37	16	68110548	68110548	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	16	68110548	68110548	G	A	SNP	DUS2	ENST00000358896	human	ensembl	74_37	+1	known	missense	c.1096	p.A366T	0.996	NULL	pfam_tRNA_hU_synthase,pfam_dsRNA-bd_dom,smart_dsRNA-bd_dom	-	no_errors	DUS2	HGNC	ENSG00000167264				105	0	0	100	21	17.3554
PLA2G15	0	genome.wustl.edu	37	16	68283238	68283238	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	16	68283238	68283238	C	A	SNP	PLA2G15	ENST00000219345	human	ensembl	74_37	+1	known	missense	c.173	p.P58Q	1.000	NULL	pfam_LACT/PDAT_acylTrfase	-	no_errors	PLA2G15	HGNC	ENSG00000103066				63	0	0	73	5	6.41026
WWP2	0	genome.wustl.edu	37	16	69964094	69964094	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	16	69964094	69964094	C	T	SNP	WWP2	ENST00000356003	human	ensembl	74_37	+1	known	nonsense	c.1378	p.R460*	1.000	pfam_WW_dom,superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom	pfam_HECT,pfam_WW_dom,superfamily_HECT,superfamily_C2_dom,superfamily_WW_dom,smart_C2_dom,smart_WW_dom,smart_HECT,pfscan_HECT,pfscan_WW_dom	-	no_errors	WWP2	HGNC	ENSG00000198373				71	0	0	49	19	27.9412
MTSS1L	0	genome.wustl.edu	37	16	70708342	70708342	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	16	70708342	70708342	T	C	SNP	MTSS1L	ENST00000338779	human	ensembl	74_37	-1	known	missense	c.920	p.Y307C	1.000	NULL	pfam_IRSp53/MIM_homology_IMD	-	no_errors	MTSS1L	HGNC	ENSG00000132613				56	0	0	44	6	12
PMFBP1	0	genome.wustl.edu	37	16	72158677	72158677	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	16	72158677	72158677	C	T	SNP	PMFBP1	ENST00000537465	human	ensembl	74_37	-1	known	missense	c.2593	p.D865N	0.166	NULL	NULL	-	no_errors	PMFBP1	HGNC	ENSG00000118557				129	0	0	109	21	16.1538
RPUSD1	0	genome.wustl.edu	37	16	836929	836929	+	Splice_Site	SNP	C	C	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	16	836929	836929	C	A	SNP	RPUSD1	ENST00000007264	human	ensembl	74_37	-1	known	splice_site	c.410-1	e4-1	1.000	-	-	-	no_errors	RPUSD1	HGNC	ENSG00000007376				98	0	0	73	10	12.0482
MLYCD	0	genome.wustl.edu	37	16	83933108	83933108	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	16	83933108	83933108	C	T	SNP	MLYCD	ENST00000262430	human	ensembl	74_37	+1	known	missense	c.359	p.A120V	1.000	NULL	pfam_Malonyl_CoA_deC	-	no_errors	MLYCD	HGNC	ENSG00000103150				27	0	0	14	4	22.2222
SLC38A8	0	genome.wustl.edu	37	16	84050219	84050219	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	16	84050219	84050219	G	A	SNP	SLC38A8	ENST00000299709	human	ensembl	74_37	-1	known	missense	c.1067	p.T356I	0.002	pfam_AA_transpt_TM	pfam_AA_transpt_TM,pfam_Tryptophan/tyrosine_permease	-	no_errors	SLC38A8	HGNC	ENSG00000166558				83	0	0	59	10	14.4928
ATP2C2	0	genome.wustl.edu	37	16	84485577	84485577	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	16	84485577	84485577	C	A	SNP	ATP2C2	ENST00000262429	human	ensembl	74_37	+1	known	missense	c.1711	p.L571I	0.997	pfam_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_PMR1	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_PMR1,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP2C2	HGNC	ENSG00000064270				178	0	0	166	25	13.089
CDRT15	0	genome.wustl.edu	37	17	14139301	14139301	+	Silent	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	17	14139301	14139301	G	A	SNP	CDRT15	ENST00000420162	human	ensembl	74_37	-1	known	silent	c.439	p.L147	0.048	NULL	NULL	-	no_errors	CDRT15	HGNC	ENSG00000223510				34	0	0	29	4	12.1212
RPA1	0	genome.wustl.edu	37	17	1783866	1783866	+	Silent	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	17	1783866	1783866	C	T	SNP	RPA1	ENST00000254719	human	ensembl	74_37	+1	known	silent	c.1122	p.P374	0.252	superfamily_NA-bd_OB-fold,tigrfam_Rep_factor_Rpa1	pfam_Rep_factor-A_C,pfam_Rep_factor-A_N,pfam_NA-bd_OB_tRNA,superfamily_NA-bd_OB-fold,tigrfam_Rep_factor_Rpa1	-	no_errors	RPA1	HGNC	ENSG00000132383				91	0	0	71	17	19.3182
SSH2	0	genome.wustl.edu	37	17	27958581	27958581	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	17	27958581	27958581	C	T	SNP	SSH2	ENST00000269033	human	ensembl	74_37	-1	known	missense	c.3550	p.A1184T	0.369	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_DEK_C,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	SSH2	HGNC	ENSG00000141298				180	1	0.552486	144	22	13.253
ASIC2	0	genome.wustl.edu	37	17	31618768	31618768	+	Silent	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	17	31618768	31618768	G	A	SNP	ASIC2	ENST00000225823	human	ensembl	74_37	-1	known	silent	c.366	p.R122	1.000	pfam_Na+channel_ASC	pfam_Na+channel_ASC,prints_Na+channel_ASC,tigrfam_EnaC	-	no_errors	ASIC2	HGNC	ENSG00000108684				62	0	0	40	10	20
CCL23	0	genome.wustl.edu	37	17	34340329	34340329	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	17	34340329	34340329	G	A	SNP	CCL23	ENST00000293280	human	ensembl	74_37	-1	known	nonsense	c.322	p.R108*	0.000	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom	-	no_errors	CCL23	HGNC	ENSG00000167236				54	0	0	31	5	13.8889
ERBB2	0	genome.wustl.edu	37	17	37879658	37879658	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	17	37879658	37879658	G	A	SNP	ERBB2	ENST00000269571	human	ensembl	74_37	+1	known	missense	c.2033	p.R678Q	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	ERBB2	HGNC	ENSG00000141736				126	0	0	88	13	12.8713
SOST	0	genome.wustl.edu	37	17	41832889	41832889	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	17	41832889	41832889	G	A	SNP	SOST	ENST00000301691	human	ensembl	74_37	-1	known	missense	c.463	p.R155C	0.907	pfam_Sclerostin/SOSTDC1,pfam_DAN,smart_Cys_knot_C	pfam_Sclerostin/SOSTDC1,pfam_DAN,smart_Cys_knot_C	-	no_errors	SOST	HGNC	ENSG00000167941				49	0	0	33	4	10.8108
HOXB9	0	genome.wustl.edu	37	17	46703515	46703515	+	Silent	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	17	46703515	46703515	C	T	SNP	HOXB9	ENST00000311177	human	ensembl	74_37	-1	known	silent	c.117	p.P39	0.998	pfam_Hox9_activation_N,pirsf_Homeobox_Hox9	pfam_Hox9_activation_N,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pirsf_Homeobox_Hox9,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	HOXB9	HGNC	ENSG00000170689				44	0	0	29	5	14.7059
MYCBPAP	0	genome.wustl.edu	37	17	48603504	48603504	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	17	48603504	48603504	G	A	SNP	MYCBPAP	ENST00000323776	human	ensembl	74_37	+1	known	missense	c.2174	p.R725Q	0.001	NULL	NULL	-	no_errors	MYCBPAP	HGNC	ENSG00000136449				143	0	0	117	17	12.6866
PITPNM3	0	genome.wustl.edu	37	17	6376029	6376029	+	Silent	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	17	6376029	6376029	G	A	SNP	PITPNM3	ENST00000262483	human	ensembl	74_37	-1	known	silent	c.1377	p.S459	0.999	pfam_DDHD,pfscan_DDHD	pfam_DDHD,pfam_LNS2,superfamily_HAD-like_dom,smart_LNS2,pfscan_DDHD	-	no_errors	PITPNM3	HGNC	ENSG00000091622				40	0	0	31	6	16.2162
DNAH2	0	genome.wustl.edu	37	17	7707688	7707688	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	17	7707688	7707688	G	T	SNP	DNAH2	ENST00000389173	human	ensembl	74_37	+1	known	missense	c.9087	p.E3029D	0.992	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH2	HGNC	ENSG00000183914				85	0	0	80	13	13.9785
KDM6B	0	genome.wustl.edu	37	17	7753402	7753402	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	17	7753402	7753402	C	T	SNP	KDM6B	ENST00000254846	human	ensembl	74_37	+1	known	missense	c.3580	p.R1194W	1.000	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	KDM6B	HGNC	ENSG00000132510				61	0	0	56	6	9.67742
ARHGEF15	0	genome.wustl.edu	37	17	8216372	8216372	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	17	8216372	8216372	G	A	SNP	ARHGEF15	ENST00000361926	human	ensembl	74_37	+1	known	missense	c.734	p.R245Q	0.123	NULL	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	-	no_errors	ARHGEF15	HGNC	ENSG00000198844				165	0	0	135	34	20.1183
ARHGEF15	0	genome.wustl.edu	37	17	8218457	8218457	+	Silent	SNP	T	T	G			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	17	8218457	8218457	T	G	SNP	ARHGEF15	ENST00000361926	human	ensembl	74_37	+1	known	silent	c.1122	p.P374	0.086	NULL	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	-	no_errors	ARHGEF15	HGNC	ENSG00000198844				58	0	0	54	8	12.9032
MFSD6L	0	genome.wustl.edu	37	17	8701217	8701217	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	17	8701217	8701217	C	T	SNP	MFSD6L	ENST00000329805	human	ensembl	74_37	-1	known	missense	c.1222	p.A408T	0.068	superfamily_MFS_dom_general_subst_transpt	superfamily_MFS_dom_general_subst_transpt	-	no_errors	MFSD6L	HGNC	ENSG00000185156				209	0	0	137	13	8.66667
FAM210A	0	genome.wustl.edu	37	18	13671878	13671878	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	18	13671878	13671878	C	T	SNP	FAM210A	ENST00000322247	human	ensembl	74_37	-1	known	missense	c.568	p.A190T	1.000	pfam_DUF1279	pfam_DUF1279	-	no_errors	FAM210A	HGNC	ENSG00000177150				99	0	0	108	12	10
KCTD1	0	genome.wustl.edu	37	18	24035755	24035755	+	Silent	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	18	24035755	24035755	C	T	SNP	KCTD1	ENST00000417602	human	ensembl	74_37	-1	known	silent	c.2550	p.T850	0.497	NULL	pfam_DUF3504,pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	-	no_errors	KCTD1	HGNC	ENSG00000134504				145	0	0	122	10	7.57576
CDH2	0	genome.wustl.edu	37	18	25572682	25572682	+	Silent	SNP	A	A	G			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	18	25572682	25572682	A	G	SNP	CDH2	ENST00000269141	human	ensembl	74_37	-1	known	silent	c.1281	p.P427	0.040	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Cadherin/Desmocollin	-	no_errors	CDH2	HGNC	ENSG00000170558				120	0	0	110	14	11.2903
CCDC178	0	genome.wustl.edu	37	18	30554568	30554568	+	Silent	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	18	30554568	30554568	C	T	SNP	CCDC178	ENST00000406524	human	ensembl	74_37	-1	known	silent	c.2538	p.R846	0.987	NULL	NULL	-	no_errors	CCDC178	HGNC	ENSG00000166960				79	0	0	77	20	20.6186
SLC14A2	0	genome.wustl.edu	37	18	43262295	43262295	+	Silent	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	18	43262295	43262295	G	A	SNP	SLC14A2	ENST00000255226	human	ensembl	74_37	+1	known	silent	c.2574	p.P858	0.003	pfam_Urea_transporter	pfam_Urea_transporter	-	no_errors	SLC14A2	HGNC	ENSG00000132874				462	0	0	408	28	6.42202
DOK6	0	genome.wustl.edu	37	18	67425047	67425047	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	18	67425047	67425047	G	A	SNP	DOK6	ENST00000382713	human	ensembl	74_37	+1	known	missense	c.794	p.R265H	0.997	NULL	pfam_Insln_rcpt_S1,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,pfscan_Insln_rcpt_S1	-	no_errors	DOK6	HGNC	ENSG00000206052				106	0	0	105	11	9.48276
GALR1	0	genome.wustl.edu	37	18	74963015	74963015	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	18	74963015	74963015	G	A	SNP	GALR1	ENST00000299727	human	ensembl	74_37	+1	known	missense	c.511	p.A171T	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_GAL1_rcpt,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_GAL1_rcpt,prints_GPCR_Rhodpsn,prints_Galanin_rcpt,prints_NPY_rcpt	-	no_errors	GALR1	HGNC	ENSG00000166573				82	0	0	60	12	16.6667
SALL3	0	genome.wustl.edu	37	18	76757125	76757125	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	18	76757125	76757125	G	A	SNP	SALL3	ENST00000537592	human	ensembl	74_37	+1	known	missense	c.3706	p.G1236S	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SALL3	HGNC	ENSG00000256463				186	0	0	172	23	11.7949
LPPR2	0	genome.wustl.edu	37	19	11468409	11468409	+	Silent	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	19	11468409	11468409	C	T	SNP	LPPR2	ENST00000591608	human	ensembl	74_37	+1	known	silent	c.60	p.F20	0.989	NULL	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	-	no_errors	DKFZP761J1410	Uniprot_gn	ENSG00000105520				56	0	0	37	11	22.9167
CIB3	0	genome.wustl.edu	37	19	16284237	16284237	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	19	16284237	16284237	T	C	SNP	CIB3	ENST00000269878	human	ensembl	74_37	-1	known	missense	c.50	p.Q17R	1.000	NULL	pfscan_EF_hand_dom	-	no_errors	CIB3	HGNC	ENSG00000141977				116	0	0	137	14	9.27152
PIK3R2	0	genome.wustl.edu	37	19	18273240	18273240	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	19	18273240	18273240	C	T	SNP	PIK3R2	ENST00000222254	human	ensembl	74_37	+1	known	missense	c.1033	p.R345W	1.000	pfam_SH2,smart_SH2,pfscan_SH2	pfam_SH2,pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,smart_SH3_domain,smart_RhoGAP_dom,smart_SH2,pfscan_SH2,pfscan_SH3_domain,pfscan_RhoGAP_dom,prints_PI3kinase_P85,prints_SH2	-	no_errors	PIK3R2	HGNC	ENSG00000105647				52	0	0	45	5	10
NCAN	0	genome.wustl.edu	37	19	19337381	19337381	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	19	19337381	19337381	G	A	SNP	NCAN	ENST00000252575	human	ensembl	74_37	+1	known	missense	c.1159	p.V387I	0.000	NULL	pfam_Link,pfam_C-type_lectin,pfam_Sushi_SCR_CCP,pfam_Ig_V-set,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_Ig_sub,smart_Link,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like_dom,prints_Link,prints_AntifreezeII	-	no_errors	NCAN	HGNC	ENSG00000130287				83	0	0	61	9	12.8571
CILP2	0	genome.wustl.edu	37	19	19656302	19656302	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	19	19656302	19656302	G	A	SNP	CILP2	ENST00000291495	human	ensembl	74_37	+1	known	missense	c.2948	p.R983H	0.000	NULL	pfam_Thrombospondin_1_rpt,pfam_Ig_I-set,superfamily_Thrombospondin_1_rpt,superfamily_CarboxyPept-like_regulatory,superfamily_Carb-bd-like_fold,smart_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom	-	no_errors	CILP2	HGNC	ENSG00000160161				35	0	0	29	3	9.375
ZNF85	0	genome.wustl.edu	37	19	21117776	21117776	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	19	21117776	21117776	A	C	SNP	ZNF85	ENST00000328178	human	ensembl	74_37	+1	known	missense	c.152	p.D51A	0.467	superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF85	HGNC	ENSG00000105750				53	0	0	38	7	15.5556
MFSD12	0	genome.wustl.edu	37	19	3546376	3546376	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	19	3546376	3546376	C	A	SNP	MFSD12	ENST00000398558	human	ensembl	74_37	-1	known	missense	c.1071	p.W357C	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	MFSD12	HGNC	ENSG00000161091				21	0	0	16	8	33.3333
GAPDHS	0	genome.wustl.edu	37	19	36033284	36033284	+	Silent	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	19	36033284	36033284	C	T	SNP	GAPDHS	ENST00000222286	human	ensembl	74_37	+1	known	silent	c.513	p.G171	0.169	pirsf_GlycerAld/Erythrose_P_DH,pfam_GlycerAld_3-P_DH_NAD(P)-bd,smart_GlycerAld_3-P_DH_NAD(P)-bd,tigrfam_Glyceraldehyde-3-P_DH_1	pirsf_GlycerAld/Erythrose_P_DH,pfam_GlycerAld_3-P_DH_cat,pfam_GlycerAld_3-P_DH_NAD(P)-bd,smart_GlycerAld_3-P_DH_NAD(P)-bd,prints_GlycerAld/Erythrose_P_DH,tigrfam_Glyceraldehyde-3-P_DH_1	-	no_errors	GAPDHS	HGNC	ENSG00000105679				56	0	0	41	4	8.88889
ZNF567	0	genome.wustl.edu	37	19	37211245	37211245	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	19	37211245	37211245	A	G	SNP	ZNF567	ENST00000536254	human	ensembl	74_37	+1	known	missense	c.1619	p.K540R	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF567	HGNC	ENSG00000189042				75	0	0	64	4	5.88235
FCGBP	0	genome.wustl.edu	37	19	40434210	40434210	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	19	40434210	40434210	A	G	SNP	FCGBP	ENST00000221347	human	ensembl	74_37	-1	known	missense	c.59	p.L20S	0.581	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EG-like_dom,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920				77	0	0	61	13	17.5676
CIC	0	genome.wustl.edu	37	19	42791717	42791717	+	Silent	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	19	42791717	42791717	G	A	SNP	CIC	ENST00000575354	human	ensembl	74_37	+1	known	silent	c.603	p.R201	0.994	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	CIC	HGNC	ENSG00000079432				115	0	0	86	16	15.6863
PLIN4	0	genome.wustl.edu	37	19	4504766	4504766	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	19	4504766	4504766	C	T	SNP	PLIN4	ENST00000301286	human	ensembl	74_37	-1	novel	missense	c.3779	p.C1260Y	0.006	pfam_Perilipin	pfam_Perilipin,superfamily_Ankyrin_rpt-contain_dom	-	no_errors	PLIN4	HGNC	ENSG00000167676				25	0	0	18	4	18.1818
BCAM	0	genome.wustl.edu	37	19	45317997	45317997	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	19	45317997	45317997	C	T	SNP	BCAM	ENST00000270233	human	ensembl	74_37	+1	known	missense	c.1058	p.T353M	0.003	smart_Ig_sub,pfscan_Ig-like_dom	pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	BCAM	HGNC	ENSG00000187244				83	0	0	69	11	13.75
GEMIN7	0	genome.wustl.edu	37	19	45593386	45593386	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	19	45593386	45593386	T	C	SNP	GEMIN7	ENST00000270257	human	ensembl	74_37	+1	known	missense	c.14	p.V5A	0.000	NULL	pfam_SMN_gemin7	-	no_errors	GEMIN7	HGNC	ENSG00000142252				251	0	0	188	38	16.8142
TRPM4	0	genome.wustl.edu	37	19	49713591	49713591	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	19	49713591	49713591	G	A	SNP	TRPM4	ENST00000252826	human	ensembl	74_37	+1	known	missense	c.3257	p.R1086H	1.000	NULL	pfam_Ion_trans_dom	-	no_errors	TRPM4	HGNC	ENSG00000130529				92	0	0	94	12	11.3208
PRMT1	0	genome.wustl.edu	37	19	50185189	50185189	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	19	50185189	50185189	G	A	SNP	PRMT1	ENST00000454376	human	ensembl	74_37	+1	known	missense	c.215	p.R72H	0.990	NULL	pfam_Ribosomal-L11_MeTrfase_PrmA,pfam_Arg_MeTrfase,pfam_Methyltransf_11,pfam_Small_mtfrase_dom,pfam_tRNA_Trfase_Trm5/Tyw2	-	no_errors	PRMT1	HGNC	ENSG00000126457				50	0	0	48	5	9.43396
TSKS	0	genome.wustl.edu	37	19	50266392	50266392	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	19	50266392	50266392	C	A	SNP	TSKS	ENST00000246801	human	ensembl	74_37	-1	known	missense	c.113	p.R38M	0.688	NULL	NULL	-	no_errors	TSKS	HGNC	ENSG00000126467				158	0	0	121	21	14.7887
PTOV1	0	genome.wustl.edu	37	19	50360277	50360277	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	19	50360277	50360277	G	A	SNP	PTOV1	ENST00000391842	human	ensembl	74_37	+1	known	missense	c.604	p.V202M	1.000	pfam_Mediator_Med25	pfam_Mediator_Med25	-	no_errors	PTOV1	HGNC	ENSG00000104960				266	0	0	182	38	17.2727
NR1H2	0	genome.wustl.edu	37	19	50882274	50882274	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	19	50882274	50882274	G	A	SNP	NR1H2	ENST00000253727	human	ensembl	74_37	+1	known	missense	c.763	p.A255T	0.474	superfamily_Nucl_hormone_rcpt_ligand-bd	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Liver_X_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Ecdystd_rcpt,prints_ThyrH_rcpt	-	no_errors	NR1H2	HGNC	ENSG00000131408				143	1	0.694444	127	21	14.1892
POLD1	0	genome.wustl.edu	37	19	50905604	50905604	+	Silent	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	19	50905604	50905604	C	T	SNP	POLD1	ENST00000440232	human	ensembl	74_37	+1	known	silent	c.732	p.Y244	0.752	pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B,tigrfam_DNA-dir_DNA_pol_B_pol2	-	no_errors	POLD1	HGNC	ENSG00000062822				80	0	0	49	4	7.54717
IGLON5	0	genome.wustl.edu	37	19	51826934	51826934	+	Silent	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	19	51826934	51826934	C	T	SNP	IGLON5	ENST00000270642	human	ensembl	74_37	+1	known	silent	c.177	p.H59	0.863	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	IGLON5	HGNC	ENSG00000142549				48	0	0	37	6	13.9535
PTPRS	0	genome.wustl.edu	37	19	5240270	5240270	+	Silent	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	19	5240270	5240270	C	T	SNP	PTPRS	ENST00000372412	human	ensembl	74_37	-1	known	silent	c.1647	p.P549	0.777	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom	-	no_errors	PTPRS	HGNC	ENSG00000105426				21	0	0	19	4	17.3913
ZNF480	0	genome.wustl.edu	37	19	52825647	52825647	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	19	52825647	52825647	C	T	SNP	ZNF480	ENST00000468240	human	ensembl	74_37	+1	known	nonsense	c.1144	p.Q382*	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF480	HGNC	ENSG00000198464				107	0	0	84	17	16.8317
MIR518A2	0	genome.wustl.edu	37	19	54242600	54242600	+	RNA	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	19	54242600	54242600	G	A	SNP	MIR518A2	ENST00000384966	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	MIR518A2	HGNC	ENSG00000207699				212	0	0	194	42	17.7966
EPN1	0	genome.wustl.edu	37	19	56203248	56203248	+	Silent	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	19	56203248	56203248	C	T	SNP	EPN1	ENST00000411543	human	ensembl	74_37	+1	known	silent	c.1149	p.G383	0.044	NULL	pfam_Epsin_dom_N,pfam_ANTH_dom,superfamily_ENTH_VHS,smart_Epsin-like_N,smart_Ubiquitin-int_motif,pfscan_Epsin-like_N,pfscan_Ubiquitin-int_motif	-	no_errors	EPN1	HGNC	ENSG00000063245				44	0	0	33	5	13.1579
ZNF583	0	genome.wustl.edu	37	19	56935314	56935314	+	Silent	SNP	T	T	G			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	19	56935314	56935314	T	G	SNP	ZNF583	ENST00000291598	human	ensembl	74_37	+1	known	silent	c.1287	p.V429	0.005	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF583	HGNC	ENSG00000198440				76	0	0	58	9	13.4328
ZNF8	0	genome.wustl.edu	37	19	58806559	58806559	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	19	58806559	58806559	G	A	SNP	ZNF8	ENST00000196548	human	ensembl	74_37	+1	known	missense	c.1385	p.R462Q	0.001	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF8	Uniprot_gn	ENSG00000083842				252	0	0	244	15	5.79151
EMR1	0	genome.wustl.edu	37	19	6924840	6924840	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	19	6924840	6924840	C	T	SNP	EMR1	ENST00000312053	human	ensembl	74_37	+1	known	missense	c.1943	p.A648V	0.994	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_secretin-like,pfam_EGF-like_Ca-bd_dom,pfam_GPS_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_EMR1_rcpt,prints_GPCR_2_secretin-like	-	no_errors	EMR1	HGNC	ENSG00000174837				110	0	0	86	19	18.0952
PNPLA6	0	genome.wustl.edu	37	19	7607530	7607530	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	19	7607530	7607530	G	A	SNP	PNPLA6	ENST00000414982	human	ensembl	74_37	+1	known	missense	c.1363	p.G455R	0.006	NULL	pfam_cNMP-bd_dom,pfam_Patatin/PLipase_A2-rel,superfamily_Acyl_Trfase/lysoPLipase,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	PNPLA6	HGNC	ENSG00000032444				61	0	0	41	7	14.5833
MUC16	0	genome.wustl.edu	37	19	9085173	9085173	+	Silent	SNP	A	A	G			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	19	9085173	9085173	A	G	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	silent	c.6642	p.N2214	0.001	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				88	0	0	60	15	20
MUC16	0	genome.wustl.edu	37	19	9090794	9090794	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	19	9090794	9090794	C	T	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.1021	p.E341K	0.009	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				80	0	0	70	18	20.4545
GPR45	0	genome.wustl.edu	37	2	105858611	105858611	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	2	105858611	105858611	G	A	SNP	GPR45	ENST00000258456	human	ensembl	74_37	+1	known	missense	c.296	p.R99H	0.233	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR45	HGNC	ENSG00000135973				146	0	0	160	9	5.32544
TGFBRAP1	0	genome.wustl.edu	37	2	105886050	105886050	+	Silent	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	2	105886050	105886050	C	T	SNP	TGFBRAP1	ENST00000258449	human	ensembl	74_37	-1	known	silent	c.2085	p.A695	0.573	pfam_Clathrin_H-chain/VPS_repeat	pfam_VPS39/TGF_beta_rcpt-assoc_2,pfam_VPS39/TGF_beta_rcpt-assoc_1,pfam_Clathrin_H-chain/VPS_repeat,pfam_Citron	-	no_errors	TGFBRAP1	HGNC	ENSG00000135966				36	0	0	18	5	21.7391
C2orf40	0	genome.wustl.edu	37	2	106694342	106694342	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	2	106694342	106694342	G	A	SNP	C2orf40	ENST00000238044	human	ensembl	74_37	+1	known	missense	c.407	p.G136D	0.618	NULL	NULL	-	no_errors	C2orf40	HGNC	ENSG00000119147				65	0	0	49	5	9.25926
PQLC3	0	genome.wustl.edu	37	2	11315100	11315100	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	2	11315100	11315100	T	C	SNP	PQLC3	ENST00000295083	human	ensembl	74_37	+1	known	missense	c.482	p.I161T	0.998	pirsf_MannP-dilichol_defect-1	pirsf_MannP-dilichol_defect-1	-	no_errors	PQLC3	HGNC	ENSG00000162976				110	0	0	90	15	14.2857
TTL	0	genome.wustl.edu	37	2	113277874	113277874	+	Silent	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	2	113277874	113277874	C	T	SNP	TTL	ENST00000233336	human	ensembl	74_37	+1	known	silent	c.891	p.S297	0.926	pfam_TTL/TTLL_fam	pfam_TTL/TTLL_fam	-	no_errors	TTL	HGNC	ENSG00000114999				144	0	0	130	23	15.0327
GREB1	0	genome.wustl.edu	37	2	11742628	11742628	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	2	11742628	11742628	G	A	SNP	GREB1	ENST00000234142	human	ensembl	74_37	+1	known	missense	c.2626	p.D876N	1.000	NULL	superfamily_P-loop_NTPase	-	no_errors	GREB1	HGNC	ENSG00000196208				405	0	0	389	49	11.1872
MAP3K19	0	genome.wustl.edu	37	2	135738842	135738842	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	2	135738842	135738842	G	A	SNP	MAP3K19	ENST00000375845	human	ensembl	74_37	-1	known	missense	c.3469	p.P1157S	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP3K19	HGNC	ENSG00000176601				131	0	0	109	13	10.6557
R3HDM1	0	genome.wustl.edu	37	2	136473119	136473119	+	Splice_Site	SNP	G	G	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	2	136473119	136473119	G	T	SNP	R3HDM1	ENST00000264160	human	ensembl	74_37	+1	known	splice_site	c.2632-1	e21-1	1.000	-	-	-	no_errors	R3HDM1	HGNC	ENSG00000048991				173	0	0	146	16	9.87654
HNMT	0	genome.wustl.edu	37	2	138771371	138771371	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	2	138771371	138771371	A	G	SNP	HNMT	ENST00000280097	human	ensembl	74_37	+1	known	missense	c.550	p.K184E	1.000	pirsf_Histamine_N-methyltransferase	pfam_Methyltransf_12,pirsf_Histamine_N-methyltransferase	-	no_errors	HNMT	HGNC	ENSG00000150540				36	0	0	40	6	13.0435
TTC21B	0	genome.wustl.edu	37	2	166758247	166758247	+	Silent	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	2	166758247	166758247	G	A	SNP	TTC21B	ENST00000243344	human	ensembl	74_37	-1	known	silent	c.2742	p.C914	1.000	smart_TPR_repeat,pfscan_TPR-contain_dom	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC21B	HGNC	ENSG00000123607				82	0	0	55	7	11.2903
LRP2	0	genome.wustl.edu	37	2	170101424	170101424	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	2	170101424	170101424	G	A	SNP	LRP2	ENST00000263816	human	ensembl	74_37	-1	known	missense	c.3209	p.S1070L	0.005	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479				101	0	0	86	9	9.47368
TTC30A	0	genome.wustl.edu	37	2	178482139	178482139	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	2	178482139	178482139	C	T	SNP	TTC30A	ENST00000355689	human	ensembl	74_37	-1	known	missense	c.1291	p.A431T	1.000	smart_TPR_repeat	smart_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC30A	HGNC	ENSG00000197557				194	0	0	184	19	9.35961
TTC30A	0	genome.wustl.edu	37	2	178483032	178483032	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	2	178483032	178483032	C	T	SNP	TTC30A	ENST00000355689	human	ensembl	74_37	-1	known	missense	c.398	p.R133K	1.000	pfscan_TPR-contain_dom	smart_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC30A	HGNC	ENSG00000197557				192	0	0	160	23	12.5683
TTN	0	genome.wustl.edu	37	2	179423360	179423360	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	2	179423360	179423360	T	G	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.79122	p.K26374N	1.000	superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				45	0	0	47	9	16.0714
TTN	0	genome.wustl.edu	37	2	179439680	179439680	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	2	179439680	179439680	G	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.63475	p.P21159S	1.000	superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				41	0	0	36	7	16.2791
TTN	0	genome.wustl.edu	37	2	179447097	179447097	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	2	179447097	179447097	C	T	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.58382	p.R19461H	1.000	pfam_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				57	0	0	52	5	8.77193
TTN	0	genome.wustl.edu	37	2	179499969	179499969	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	2	179499969	179499969	T	C	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.34243	p.S11415G	0.999	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				120	0	0	97	20	17.094
TTN	0	genome.wustl.edu	37	2	179501128	179501128	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	2	179501128	179501128	C	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	nonsense	c.33622	p.E11208*	1.000	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				57	0	0	51	8	13.5593
TTN	0	genome.wustl.edu	37	2	179571595	179571595	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	2	179571595	179571595	C	T	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.25396	p.V8466I	0.000	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				29	0	0	30	4	11.7647
PLCL1	0	genome.wustl.edu	37	2	198950517	198950517	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	2	198950517	198950517	C	T	SNP	PLCL1	ENST00000428675	human	ensembl	74_37	+1	known	missense	c.2276	p.A759V	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_Pleckstrin_homology,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCL1	HGNC	ENSG00000115896				115	0	0	100	19	15.9664
ABI2	0	genome.wustl.edu	37	2	204267383	204267383	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	2	204267383	204267383	G	A	SNP	ABI2	ENST00000295851	human	ensembl	74_37	+1	known	missense	c.1118	p.R373H	1.000	NULL	pfam_Abl-interactor_HHR_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,pfscan_T_SNARE_dom,prints_SH3_domain,prints_p67phox	-	no_errors	ABI2	HGNC	ENSG00000138443				102	0	0	83	6	6.74157
FASTKD2	0	genome.wustl.edu	37	2	207651571	207651571	+	Silent	SNP	T	T	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	2	207651571	207651571	T	A	SNP	FASTKD2	ENST00000236980	human	ensembl	74_37	+1	known	silent	c.1542	p.A514	0.000	pfam_FAST_Leu-rich	pfam_FAST_Leu-rich,pfam_FAST_2,pfam_RAP,smart_RAP	-	no_errors	FASTKD2	HGNC	ENSG00000118246				113	0	0	102	12	10.5263
MREG	0	genome.wustl.edu	37	2	216809668	216809668	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	2	216809668	216809668	C	T	SNP	MREG	ENST00000263268	human	ensembl	74_37	-1	known	missense	c.563	p.R188Q	0.093	NULL	NULL	-	no_errors	MREG	HGNC	ENSG00000118242				55	0	0	30	5	14.2857
TMEM169	0	genome.wustl.edu	37	2	216964784	216964784	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	2	216964784	216964784	C	A	SNP	TMEM169	ENST00000295658	human	ensembl	74_37	+1	known	nonsense	c.413	p.S138*	0.082	NULL	NULL	-	no_errors	TMEM169	HGNC	ENSG00000163449				89	0	0	81	17	17.3469
TNS1	0	genome.wustl.edu	37	2	218683363	218683363	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	2	218683363	218683363	G	A	SNP	TNS1	ENST00000171887	human	ensembl	74_37	-1	known	missense	c.3380	p.A1127V	0.324	NULL	pfam_PTB,pfam_Tensin_phosphatase_C2-dom,pfam_SH2,superfamily_C2_dom,smart_Tyr_Pase_cat,smart_SH2,smart_PTB/PI_dom,pfscan_SH2,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TNS1	HGNC	ENSG00000079308				63	0	0	70	7	9.09091
TTLL4	0	genome.wustl.edu	37	2	219603187	219603187	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	2	219603187	219603187	C	T	SNP	TTLL4	ENST00000258398	human	ensembl	74_37	+1	known	missense	c.788	p.P263L	0.000	NULL	pfam_TTL/TTLL_fam	-	no_errors	TTLL4	HGNC	ENSG00000135912				140	0	0	140	16	10.2564
TRIP12	0	genome.wustl.edu	37	2	230672480	230672480	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	2	230672480	230672480	G	A	SNP	TRIP12	ENST00000283943	human	ensembl	74_37	-1	known	missense	c.2296	p.R766C	1.000	superfamily_ARM-type_fold,pfscan_WWE-dom	pfam_HECT,superfamily_HECT,superfamily_ARM-type_fold,smart_HECT,pfscan_HECT,pfscan_WWE-dom	-	no_errors	TRIP12	HGNC	ENSG00000153827				69	0	0	55	11	16.6667
ECEL1	0	genome.wustl.edu	37	2	233350780	233350780	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	2	233350780	233350780	C	T	SNP	ECEL1	ENST00000304546	human	ensembl	74_37	-1	known	missense	c.584	p.R195Q	0.999	pfam_Peptidase_M13_N	pfam_Peptidase_M13_N,pfam_Peptidase_M13_C,prints_Peptidase_M13_C	-	no_errors	ECEL1	HGNC	ENSG00000171551				21	0	0	14	4	22.2222
CHRNG	0	genome.wustl.edu	37	2	233407735	233407735	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	2	233407735	233407735	G	A	SNP	CHRNG	ENST00000389494	human	ensembl	74_37	+1	known	missense	c.748	p.A250T	0.322	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel	-	no_errors	CHRNG	HGNC	ENSG00000196811				227	0	0	210	34	13.9344
GIGYF2	0	genome.wustl.edu	37	2	233652024	233652024	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	2	233652024	233652024	C	T	SNP	GIGYF2	ENST00000373566	human	ensembl	74_37	+1	known	nonsense	c.763	p.R255*	1.000	NULL	pfam_GYF,superfamily_GYF,smart_GYF,pfscan_GYF	-	no_errors	GIGYF2	HGNC	ENSG00000204120				59	0	0	52	4	7.14286
DNMT3A	0	genome.wustl.edu	37	2	25467502	25467502	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	2	25467502	25467502	G	A	SNP	DNMT3A	ENST00000264709	human	ensembl	74_37	-1	known	missense	c.1574	p.A525V	1.000	NULL	pfam_PWWP_dom,pfam_C5_MeTfrase,superfamily_Znf_FYVE_PHD,smart_PWWP_dom,pfscan_PWWP_dom	-	no_errors	DNMT3A	HGNC	ENSG00000119772				64	0	0	58	4	6.45161
FBXO11	0	genome.wustl.edu	37	2	48046138	48046138	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	2	48046138	48046138	C	T	SNP	FBXO11	ENST00000403359	human	ensembl	74_37	-1	known	missense	c.1877	p.S626N	1.000	superfamily_F-box_dom,superfamily_Pectin_lyase_fold/virulence,smart_Carb-bd_sugar_hydrolysis-dom,smart_PbH1,tigrfam_Para_beta_helix_rpt-2	pfam_Znf_N-recognin,pfam_F-box_dom,superfamily_Pectin_lyase_fold/virulence,superfamily_F-box_dom,smart_F-box_dom,smart_PbH1,smart_Carb-bd_sugar_hydrolysis-dom,smart_Znf_N-recognin_met,pfscan_F-box_dom,pfscan_Znf_N-recognin,tigrfam_Para_beta_helix_rpt-2	-	no_errors	FBXO11	HGNC	ENSG00000138081				147	0	0	140	17	10.828
USP34	0	genome.wustl.edu	37	2	61430387	61430387	+	Silent	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	2	61430387	61430387	G	A	SNP	USP34	ENST00000398571	human	ensembl	74_37	-1	known	silent	c.9396	p.D3132	1.000	NULL	pfam_Peptidase_C19/C67,superfamily_ARM-type_fold,pfscan_Peptidase_C19/C67	-	no_errors	USP34	HGNC	ENSG00000115464				56	0	0	65	6	8.4507
LGALSL	0	genome.wustl.edu	37	2	64683599	64683599	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	2	64683599	64683599	G	T	SNP	LGALSL	ENST00000238875	human	ensembl	74_37	+1	known	missense	c.375	p.R125S	1.000	pfam_Galectin_CRD,superfamily_ConA-like_lec_gl_sf,smart_Galectin_CRD	pfam_Galectin_CRD,superfamily_ConA-like_lec_gl_sf,smart_Galectin_CRD	-	no_errors	LGALSL	HGNC	ENSG00000119862				258	0	0	212	29	12.0332
FBXO41	0	genome.wustl.edu	37	2	73491512	73491512	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	2	73491512	73491512	C	A	SNP	FBXO41	ENST00000295133	human	ensembl	74_37	-1	known	missense	c.1883	p.R628L	1.000	superfamily_F-box_dom	superfamily_F-box_dom	-	no_errors	FBXO41	HGNC	ENSG00000163013				179	0	0	151	11	6.79012
MOGS	0	genome.wustl.edu	37	2	74689823	74689823	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	2	74689823	74689823	C	T	SNP	MOGS	ENST00000233616	human	ensembl	74_37	-1	known	missense	c.1093	p.A365T	0.943	pfam_Glycoside_hydrolase_63	pfam_Glycoside_hydrolase_63,superfamily_6-hairpin_glycosidase-like	-	no_errors	MOGS	HGNC	ENSG00000115275				178	0	0	164	11	6.28571
HTRA2	0	genome.wustl.edu	37	2	74760069	74760069	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	2	74760069	74760069	G	A	SNP	HTRA2	ENST00000258080	human	ensembl	74_37	+1	known	missense	c.1334	p.R445Q	0.001	superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_Peptidase_S1,pfam_PDZ,superfamily_Trypsin-like_Pept_dom,superfamily_PDZ,smart_PDZ,pfscan_PDZ,prints_Peptidase_S1C	-	no_errors	HTRA2	HGNC	ENSG00000115317				223	0	0	152	23	13.1429
ANKRD36BP2	0	genome.wustl.edu	37	2	89103957	89103957	+	RNA	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	2	89103957	89103957	G	A	SNP	ANKRD36BP2	ENST00000393515	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	ANKRD36BP2	HGNC	ENSG00000230006				27	0	0	34	5	12.8205
PROM2	0	genome.wustl.edu	37	2	95954315	95954315	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	2	95954315	95954315	C	T	SNP	PROM2	ENST00000317620	human	ensembl	74_37	+1	known	missense	c.2419	p.R807C	0.996	pfam_Prominin	pfam_Prominin	-	no_errors	PROM2	HGNC	ENSG00000155066				102	0	0	94	12	11.3208
ANKRD36	0	genome.wustl.edu	37	2	97784159	97784159	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	2	97784159	97784159	G	A	SNP	ANKRD36	ENST00000420699	human	ensembl	74_37	+1	known	missense	c.391	p.G131R	0.507	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD36	HGNC	ENSG00000135976				115	0	0	91	10	9.90099
DLGAP4	0	genome.wustl.edu	37	20	35060650	35060650	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	20	35060650	35060650	G	A	SNP	DLGAP4	ENST00000339266	human	ensembl	74_37	+1	known	missense	c.530	p.G177D	1.000	NULL	pfam_GKAP	-	no_errors	DLGAP4	HGNC	ENSG00000080845				68	0	0	43	10	18.8679
TTPAL	0	genome.wustl.edu	37	20	43108886	43108886	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	20	43108886	43108886	C	T	SNP	TTPAL	ENST00000262605	human	ensembl	74_37	+1	known	missense	c.247	p.R83C	1.000	pfam_CRAL/TRIO_N_dom,superfamily_CRAL/TRIO_N_dom,prints_CRAL-bd_toc_tran	pfam_CRAL-TRIO_dom,pfam_CRAL/TRIO_N_dom,superfamily_CRAL-TRIO_dom,superfamily_CRAL/TRIO_N_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,prints_CRAL-bd_toc_tran	-	no_errors	TTPAL	HGNC	ENSG00000124120				35	0	0	44	4	8.33333
ELMO2	0	genome.wustl.edu	37	20	45004410	45004410	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	20	45004410	45004410	C	T	SNP	ELMO2	ENST00000439931	human	ensembl	74_37	-1	known	missense	c.863	p.R288H	1.000	NULL	pfam_DUF3361,pfam_Engulfment_cell_motility_ELMO,superfamily_ARM-type_fold	-	no_errors	ELMO2	HGNC	ENSG00000062598				85	0	0	64	13	16.8831
SLC9A8	0	genome.wustl.edu	37	20	48503379	48503379	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	20	48503379	48503379	G	A	SNP	SLC9A8	ENST00000417961	human	ensembl	74_37	+1	known	missense	c.1630	p.V544M	0.924	NULL	pfam_Cation/H_exchanger,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A8	HGNC	ENSG00000197818				112	0	0	69	7	9.21053
GPCPD1	0	genome.wustl.edu	37	20	5574004	5574004	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	20	5574004	5574004	C	T	SNP	GPCPD1	ENST00000379019	human	ensembl	74_37	-1	known	missense	c.200	p.R67H	1.000	pfam_CBM_fam20,superfamily_Carb-bd-like_fold,pfscan_CBM_fam20	pfam_GlyceroP-diester-Pdiesterase,pfam_CBM_fam20,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_Carb-bd-like_fold,pfscan_CBM_fam20	-	no_errors	GPCPD1	HGNC	ENSG00000125772				253	0	0	188	31	14.1553
SLC17A9	0	genome.wustl.edu	37	20	61598711	61598711	+	Silent	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	20	61598711	61598711	C	T	SNP	SLC17A9	ENST00000370351	human	ensembl	74_37	+1	known	silent	c.1170	p.G390	0.325	superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC17A9	HGNC	ENSG00000101194				270	0	0	221	25	10.1626
OPRL1	0	genome.wustl.edu	37	20	62729272	62729272	+	Silent	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	20	62729272	62729272	G	A	SNP	OPRL1	ENST00000336866	human	ensembl	74_37	+1	known	silent	c.351	p.P117	0.016	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_NPY_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_X_opioid_rcpt,prints_GPCR_Rhodpsn,prints_Opioid_rcpt,prints_Somatstn_rcpt,prints_Neuropept_B/W_rcpt,prints_NPY_rcpt	-	no_errors	OPRL1	HGNC	ENSG00000125510				200	1	0.497512	134	25	15.7233
KRTAP21-1	0	genome.wustl.edu	37	21	32127620	32127620	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	21	32127620	32127620	C	G	SNP	KRTAP21-1	ENST00000335093	human	ensembl	74_37	-1	known	missense	c.77	p.C26S	0.010	NULL	NULL	-	no_errors	KRTAP21-1	HGNC	ENSG00000187005				167	0	0	166	21	11.2299
MIS18A	0	genome.wustl.edu	37	21	33651281	33651281	+	Silent	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	21	33651281	33651281	G	A	SNP	MIS18A	ENST00000290130	human	ensembl	74_37	-1	known	silent	c.45	p.G15	0.000	NULL	NULL	-	no_errors	MIS18A	HGNC	ENSG00000159055				116	0	0	67	12	15.1899
MRAP	0	genome.wustl.edu	37	21	33679016	33679016	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	21	33679016	33679016	C	T	SNP	MRAP	ENST00000303645	human	ensembl	74_37	+1	known	missense	c.172	p.L58F	0.998	NULL	NULL	-	no_errors	MRAP	HGNC	ENSG00000170262				97	0	0	67	14	17.284
DOPEY2	0	genome.wustl.edu	37	21	37665815	37665815	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	21	37665815	37665815	A	T	SNP	DOPEY2	ENST00000399151	human	ensembl	74_37	+1	known	missense	c.6843	p.L2281F	0.000	NULL	pfam_Dopey_N	-	no_errors	DOPEY2	HGNC	ENSG00000142197				107	0	0	111	12	9.7561
DYRK1A	0	genome.wustl.edu	37	21	38862544	38862544	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	21	38862544	38862544	C	G	SNP	DYRK1A	ENST00000398960	human	ensembl	74_37	+1	known	missense	c.732	p.N244K	0.995	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	DYRK1A	HGNC	ENSG00000157540				104	0	0	77	15	16.3043
UBASH3A	0	genome.wustl.edu	37	21	43833294	43833294	+	Silent	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	21	43833294	43833294	C	T	SNP	UBASH3A	ENST00000319294	human	ensembl	74_37	+1	known	silent	c.516	p.F172	0.810	NULL	pfam_His_Pase_superF_clade-1,pfam_SH3_domain,superfamily_SH3_domain,superfamily_UBA-like,smart_SH3_domain,pfscan_SH3_domain,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	UBASH3A	HGNC	ENSG00000160185				115	0	0	75	17	18.4783
RSPH1	0	genome.wustl.edu	37	21	43906511	43906511	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	21	43906511	43906511	G	A	SNP	RSPH1	ENST00000291536	human	ensembl	74_37	-1	known	missense	c.335	p.T112I	1.000	pfam_MORN,smart_MORN	pfam_MORN,smart_MORN	-	no_errors	RSPH1	HGNC	ENSG00000160188				216	0	0	152	24	13.6364
ITGB2	0	genome.wustl.edu	37	21	46308725	46308725	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	21	46308725	46308725	T	G	SNP	ITGB2	ENST00000302347	human	ensembl	74_37	-1	known	missense	c.1963	p.N655H	0.000	pirsf_Integrin_bsu,pfam_Integrin_bsu_tail,superfamily_Integrin_bsu_tail	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_Integrin_bsu_tail,pfam_Integrin_bsu_cyt_dom,pfam_EGF_extracell,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like_fold,smart_Integrin_bsu_N,prints_Integrin_bsu	-	no_errors	ITGB2	HGNC	ENSG00000160255				76	0	0	60	11	15.493
COL6A1	0	genome.wustl.edu	37	21	47423388	47423388	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	21	47423388	47423388	C	T	SNP	COL6A1	ENST00000361866	human	ensembl	74_37	+1	known	missense	c.2548	p.R850C	0.998	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A1	HGNC	ENSG00000142156				40	0	0	23	5	17.8571
COL6A2	0	genome.wustl.edu	37	21	47549166	47549166	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	21	47549166	47549166	C	T	SNP	COL6A2	ENST00000357838	human	ensembl	74_37	+1	known	missense	c.2518	p.P840S	0.999	NULL	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A2	HGNC	ENSG00000142173				212	0	0	167	24	12.5654
BMS1P20	0	genome.wustl.edu	37	22	22664141	22664141	+	RNA	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	22	22664141	22664141	G	A	SNP	BMS1P20	ENST00000426066	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	BMS1P20	HGNC	ENSG00000236850				109	0	0	97	6	5.82524
CHEK2	0	genome.wustl.edu	37	22	29121017	29121017	+	Silent	SNP	G	G	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	22	29121017	29121017	G	T	SNP	CHEK2	ENST00000382580	human	ensembl	74_37	-1	known	silent	c.669	p.R223	0.995	pfam_FHA_dom,superfamily_SMAD_FHA_domain	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_FHA_dom,superfamily_Kinase-like_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_FHA_dom,pfscan_Prot_kinase_dom	-	no_errors	CHEK2	HGNC	ENSG00000183765				104	0	0	95	15	13.6364
ZNRF3	0	genome.wustl.edu	37	22	29444405	29444405	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	22	29444405	29444405	G	A	SNP	ZNRF3	ENST00000544604	human	ensembl	74_37	+1	known	missense	c.941	p.R314Q	1.000	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	ZNRF3	HGNC	ENSG00000183579				103	0	0	68	12	15
ASCC2	0	genome.wustl.edu	37	22	30218382	30218382	+	Silent	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	22	30218382	30218382	G	A	SNP	ASCC2	ENST00000307790	human	ensembl	74_37	-1	known	silent	c.483	p.I161	1.000	NULL	pfam_CUE,superfamily_UBA-like,smart_CUE,pfscan_CUE	-	no_errors	ASCC2	HGNC	ENSG00000100325				163	0	0	178	11	5.82011
MPST	0	genome.wustl.edu	37	22	37420785	37420785	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	22	37420785	37420785	C	T	SNP	MPST	ENST00000397129	human	ensembl	74_37	+1	known	missense	c.589	p.R197C	0.101	pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,pfscan_Rhodanese-like_dom	pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,pfscan_Rhodanese-like_dom	-	no_errors	MPST	HGNC	ENSG00000128309				35	0	0	36	6	14.2857
SH3BP1	0	genome.wustl.edu	37	22	38046564	38046564	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	22	38046564	38046564	T	C	SNP	SH3BP1	ENST00000357436	human	ensembl	74_37	+1	known	missense	c.1430	p.V477A	1.000	NULL	pfam_RhoGAP_dom,pfam_BAR_dom,superfamily_Rho_GTPase_activation_prot,smart_BAR_dom,smart_RhoGAP_dom,pfscan_BAR_dom,pfscan_RhoGAP_dom	-	no_errors	SH3BP1	HGNC	ENSG00000100092				131	0	0	83	13	13.5417
RANGAP1	0	genome.wustl.edu	37	22	41676938	41676938	+	Silent	SNP	A	A	G			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	22	41676938	41676938	A	G	SNP	RANGAP1	ENST00000356244	human	ensembl	74_37	-1	known	silent	c.111	p.D37	1.000	NULL	pfam_Ran_GTPase_activating_1_C,superfamily_Ran_GTPase_activating_1_C,smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	RANGAP1	HGNC	ENSG00000100401				92	0	0	109	7	6.03448
PARVB	0	genome.wustl.edu	37	22	44514998	44514998	+	Silent	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	22	44514998	44514998	C	T	SNP	PARVB	ENST00000406477	human	ensembl	74_37	+1	known	silent	c.453	p.G151	0.929	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	PARVB	HGNC	ENSG00000188677				164	0	0	130	16	10.9589
PLXNB2	0	genome.wustl.edu	37	22	50726198	50726198	+	Silent	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	22	50726198	50726198	C	T	SNP	PLXNB2	ENST00000359337	human	ensembl	74_37	-1	known	silent	c.1506	p.P502	0.000	pfam_Plexin_repeat,superfamily_Plexin-like_fold,smart_Plexin-like_fold	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT,pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNB2	HGNC	ENSG00000196576				17	0	0	18	6	25
SBF1	0	genome.wustl.edu	37	22	50897714	50897714	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	22	50897714	50897714	C	A	SNP	SBF1	ENST00000380817	human	ensembl	74_37	-1	known	missense	c.3796	p.G1266C	0.998	NULL	pfam_SBF2,pfam_DENN_dom,pfam_uDENN_dom,pfam_Myotubularin-like_Pase_dom,pfam_dDENN_dom,pfam_GRAM,pfam_Pleckstrin_homology,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,smart_GRAM,smart_Pleckstrin_homology,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_Pleckstrin_homology	-	no_errors	SBF1	HGNC	ENSG00000100241				45	0	0	34	2	5.55556
LMF2	0	genome.wustl.edu	37	22	50944598	50944598	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	22	50944598	50944598	C	T	SNP	LMF2	ENST00000474879	human	ensembl	74_37	-1	known	missense	c.640	p.A214T	0.998	pfam_LMF	pfam_LMF	-	no_errors	LMF2	HGNC	ENSG00000100258				10	0	0	10	6	37.5
HHLA2	0	genome.wustl.edu	37	3	108072517	108072517	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	3	108072517	108072517	A	G	SNP	HHLA2	ENST00000357759	human	ensembl	74_37	+1	known	missense	c.308	p.N103S	1.000	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr	pfam_Ig_V-set,pfam_Ig_C1-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	HHLA2	HGNC	ENSG00000114455				80	0	0	103	6	5.50459
KIAA1524	0	genome.wustl.edu	37	3	108298166	108298166	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	3	108298166	108298166	A	T	SNP	KIAA1524	ENST00000295746	human	ensembl	74_37	-1	known	missense	c.780	p.D260E	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	KIAA1524	HGNC	ENSG00000163507				191	0	0	208	27	11.4894
CCDC80	0	genome.wustl.edu	37	3	112324517	112324517	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	3	112324517	112324517	A	C	SNP	CCDC80	ENST00000206423	human	ensembl	74_37	-1	known	missense	c.2600	p.L867R	1.000	NULL	NULL	-	no_errors	CCDC80	HGNC	ENSG00000091986				91	0	0	98	17	14.7826
SIDT1	0	genome.wustl.edu	37	3	113320434	113320434	+	Splice_Site	SNP	G	G	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	3	113320434	113320434	G	T	SNP	SIDT1	ENST00000393830	human	ensembl	74_37	+1	known	splice_site	c.1046-1	e11-1	1.000	-	-	-	no_errors	SIDT1	HGNC	ENSG00000072858				59	0	0	60	7	10.4478
GSK3B	0	genome.wustl.edu	37	3	119642241	119642241	+	Silent	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	3	119642241	119642241	C	T	SNP	GSK3B	ENST00000316626	human	ensembl	74_37	-1	known	silent	c.456	p.T152	0.984	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	GSK3B	HGNC	ENSG00000082701				41	0	0	41	5	10.8696
CAND2	0	genome.wustl.edu	37	3	12858445	12858445	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	3	12858445	12858445	A	G	SNP	CAND2	ENST00000456430	human	ensembl	74_37	+1	known	missense	c.2014	p.T672A	1.000	superfamily_ARM-type_fold	pfam_TATA-bd_TIP120,pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	CAND2	HGNC	ENSG00000144712				63	0	0	62	9	12.6761
CHST2	0	genome.wustl.edu	37	3	142840554	142840554	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	3	142840554	142840554	G	A	SNP	CHST2	ENST00000309575	human	ensembl	74_37	+1	known	missense	c.896	p.R299H	1.000	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,pirsf_Carbohydrate_sulfotransferase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,pirsf_Carbohydrate_sulfotransferase	-	no_errors	CHST2	HGNC	ENSG00000175040				21	0	0	11	5	31.25
C3orf20	0	genome.wustl.edu	37	3	14744719	14744719	+	Silent	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	3	14744719	14744719	C	T	SNP	C3orf20	ENST00000253697	human	ensembl	74_37	+1	known	silent	c.828	p.S276	0.002	NULL	NULL	-	no_errors	C3orf20	HGNC	ENSG00000131379				235	0	0	248	29	10.4693
WWTR1	0	genome.wustl.edu	37	3	149290705	149290705	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	3	149290705	149290705	C	T	SNP	WWTR1	ENST00000360632	human	ensembl	74_37	-1	known	missense	c.514	p.V172I	0.052	NULL	pfam_WW_dom,superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom	-	no_errors	WWTR1	HGNC	ENSG00000018408				92	0	0	83	8	8.79121
PLCH1	0	genome.wustl.edu	37	3	155203278	155203278	+	Silent	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	3	155203278	155203278	G	A	SNP	PLCH1	ENST00000340059	human	ensembl	74_37	-1	known	silent	c.2865	p.G955	0.000	NULL	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_Pleckstrin_homology,smart_EF_hand_dom,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,pfscan_EF_hand_dom,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCH1	HGNC	ENSG00000114805				142	1	0.699301	148	18	10.8434
GALNT15	0	genome.wustl.edu	37	3	16237382	16237382	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	3	16237382	16237382	C	T	SNP	GALNT15	ENST00000339732	human	ensembl	74_37	+1	known	missense	c.655	p.P219S	1.000	pfam_Glyco_trans_2	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT15	HGNC	ENSG00000131386				69	0	0	70	8	10.2564
TNFSF10	0	genome.wustl.edu	37	3	172241098	172241098	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	3	172241098	172241098	A	C	SNP	TNFSF10	ENST00000241261	human	ensembl	74_37	-1	known	missense	c.77	p.L26R	1.000	pirsf_TNF_ligand_10/11	pfam_TNF_dom,superfamily_Tumour_necrosis_fac-like_dom,smart_TNF_dom,pirsf_TNF_ligand_10/11,pfscan_TNF_dom	-	no_errors	TNFSF10	HGNC	ENSG00000121858				130	0	0	140	19	11.9497
PIK3CA	0	genome.wustl.edu	37	3	178936092	178936092	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	3	178936092	178936092	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	74_37	+1	known	missense	c.1634	p.E545G	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879				79	0	0	84	12	12.5
USP13	0	genome.wustl.edu	37	3	179478997	179478997	+	Silent	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	3	179478997	179478997	C	T	SNP	USP13	ENST00000263966	human	ensembl	74_37	+1	known	silent	c.2046	p.G682	0.064	pfam_Peptidase_C19/C67,pfam_UBA/Ts_N,smart_UBA/transl_elong_EF1B_N_euk,pirsf_Ubiquitinyl_hydrolase,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfam_UBA/Ts_N,pfam_Znf_UBP,superfamily_UBA-like,smart_Znf_UBP,smart_UBA/transl_elong_EF1B_N_euk,pirsf_Ubiquitinyl_hydrolase,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_UBP,pfscan_Peptidase_C19/C67	-	no_errors	USP13	HGNC	ENSG00000058056				113	0	0	124	14	10.1449
EIF4G1	0	genome.wustl.edu	37	3	184038434	184038434	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	3	184038434	184038434	C	T	SNP	EIF4G1	ENST00000352767	human	ensembl	74_37	+1	known	missense	c.575	p.P192L	1.000	NULL	pfam_MIF4G-like_typ-3,pfam_Initiation_fac_eIF4g_MI,pfam_W2_domain,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3,smart_Initiation_fac_eIF4g_MI,smart_W2_domain	-	no_errors	EIF4G1	HGNC	ENSG00000114867				105	0	0	114	16	12.3077
EIF4G1	0	genome.wustl.edu	37	3	184044360	184044360	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	3	184044360	184044360	C	T	SNP	EIF4G1	ENST00000352767	human	ensembl	74_37	+1	known	nonsense	c.3289	p.R1097*	1.000	NULL	pfam_MIF4G-like_typ-3,pfam_Initiation_fac_eIF4g_MI,pfam_W2_domain,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3,smart_Initiation_fac_eIF4g_MI,smart_W2_domain	-	no_errors	EIF4G1	HGNC	ENSG00000114867				109	1	0.909091	123	21	14.5833
EPHB3	0	genome.wustl.edu	37	3	184297328	184297328	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	3	184297328	184297328	G	A	SNP	EPHB3	ENST00000330394	human	ensembl	74_37	+1	known	missense	c.1865	p.R622Q	1.000	pirsf_Tyr_kinase_ephrin_rcpt,superfamily_Kinase-like_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHB3	HGNC	ENSG00000182580				120	0	0	123	11	8.20896
TP63	0	genome.wustl.edu	37	3	189604248	189604248	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	3	189604248	189604248	T	C	SNP	TP63	ENST00000264731	human	ensembl	74_37	+1	known	missense	c.1415	p.M472T	1.000	NULL	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_SAM_2,superfamily_p53-like_TF_DNA-bd,superfamily_SAM/pointed,superfamily_p53_tetrameristn,smart_SAM,prints_p53_tumour_suppressor	-	no_errors	TP63	HGNC	ENSG00000073282				113	0	0	91	23	20.1754
LRRC15	0	genome.wustl.edu	37	3	194081221	194081221	+	Silent	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	3	194081221	194081221	G	A	SNP	LRRC15	ENST00000439944	human	ensembl	74_37	-1	known	silent	c.570	p.S190	1.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	LRRC15	HGNC	ENSG00000172061				311	0	0	297	38	11.3433
MUC4	0	genome.wustl.edu	37	3	195480005	195480005	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	3	195480005	195480005	T	C	SNP	MUC4	ENST00000463781	human	ensembl	74_37	-1	known	missense	c.15425	p.Q5142R	0.396	smart_EG-like_dom,pfscan_EG-like_dom	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EG-like_dom,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113				171	0	0	193	11	5.39216
KAT2B	0	genome.wustl.edu	37	3	20113953	20113953	+	Splice_Site	SNP	T	T	C			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	3	20113953	20113953	T	C	SNP	KAT2B	ENST00000263754	human	ensembl	74_37	+1	known	splice_site	c.430+2	e2+2	1.000	-	-	-	no_errors	KAT2B	HGNC	ENSG00000114166				170	0	0	176	34	16.1905
GPD1L	0	genome.wustl.edu	37	3	32181857	32181857	+	Silent	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	3	32181857	32181857	C	T	SNP	GPD1L	ENST00000282541	human	ensembl	74_37	+1	known	silent	c.504	p.I168	0.096	pfam_G3P_DH_NAD-dep_N,pirsf_G3P_DH_NAD-dep,prints_G3P_DH_NAD-dep,tigrfam_G3P_DH_NAD-dep_euk	pfam_G3P_DH_NAD-dep_C,pfam_G3P_DH_NAD-dep_N,superfamily_6-PGluconate_DH_C-like,pirsf_G3P_DH_NAD-dep,prints_G3P_DH_NAD-dep,tigrfam_G3P_DH_NAD-dep_euk	-	no_errors	GPD1L	HGNC	ENSG00000152642				124	0	0	140	16	10.2564
SCN5A	0	genome.wustl.edu	37	3	38592731	38592731	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	3	38592731	38592731	G	A	SNP	SCN5A	ENST00000333535	human	ensembl	74_37	-1	known	missense	c.5132	p.A1711V	1.000	pfam_Ion_trans_dom,pfam_PKD1_2_channel	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,prints_Na_channel_a5su,prints_Na_channel_asu	-	no_errors	SCN5A	HGNC	ENSG00000183873				173	0	0	171	13	7.06522
XIRP1	0	genome.wustl.edu	37	3	39227701	39227701	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	3	39227701	39227701	C	T	SNP	XIRP1	ENST00000340369	human	ensembl	74_37	-1	known	missense	c.3236	p.G1079D	0.008	NULL	pfam_Actin-binding_Xin_repeat	-	no_errors	XIRP1	HGNC	ENSG00000168334				92	0	0	95	6	5.94059
RPL14	0	genome.wustl.edu	37	3	40499484	40499484	+	Splice_Site	SNP	T	T	C			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	3	40499484	40499484	T	C	SNP	RPL14	ENST00000338970	human	ensembl	74_37	+1	known	splice_site	c.105+2	e2+2	1.000	-	-	-	no_errors	RPL14	HGNC	ENSG00000188846				100	0	0	87	17	16.3462
EXOSC7	0	genome.wustl.edu	37	3	45038710	45038710	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	3	45038710	45038710	G	A	SNP	EXOSC7	ENST00000265564	human	ensembl	74_37	+1	known	missense	c.386	p.R129Q	1.000	pfam_ExoRNase_PH_dom1,superfamily_Ribosomal_S5_D2-typ_fold	pfam_ExoRNase_PH_dom1,pfam_ExoRNase_PH_dom2,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_ExoRNase_PH_dom2	-	no_errors	EXOSC7	HGNC	ENSG00000075914				102	0	0	105	13	11.0169
COL7A1	0	genome.wustl.edu	37	3	48602300	48602300	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	3	48602300	48602300	A	G	SNP	COL7A1	ENST00000328333	human	ensembl	74_37	-1	known	missense	c.8734	p.C2912R	1.000	pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	pfam_Collagen,pfam_Fibronectin_type3,pfam_VWF_A,pfam_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,superfamily_Prot_inh_Kunz-m,smart_VWF_A,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL7A1	HGNC	ENSG00000114270				107	0	0	97	13	11.8182
RHOA	0	genome.wustl.edu	37	3	49412922	49412922	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	3	49412922	49412922	T	C	SNP	RHOA	ENST00000418115	human	ensembl	74_37	-1	known	missense	c.101	p.Y34C	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RHOA	HGNC	ENSG00000067560				223	0	0	176	85	32.567
CDHR4	0	genome.wustl.edu	37	3	49836453	49836453	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	3	49836453	49836453	T	C	SNP	CDHR4	ENST00000412678	human	ensembl	74_37	-1	known	missense	c.377	p.Q126R	0.000	NULL	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDHR4	HGNC	ENSG00000187492				17	0	0	17	4	19.0476
DOCK3	0	genome.wustl.edu	37	3	51196730	51196730	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	3	51196730	51196730	G	A	SNP	DOCK3	ENST00000266037	human	ensembl	74_37	+1	known	missense	c.884	p.R295Q	1.000	NULL	pfam_DOCK_C,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK3	HGNC	ENSG00000088538				127	0	0	132	19	12.5828
TMEM110	0	genome.wustl.edu	37	3	52883877	52883877	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	3	52883877	52883877	C	T	SNP	TMEM110	ENST00000355083	human	ensembl	74_37	-1	known	missense	c.358	p.V120M	0.404	pfam_DUF3661_TM	pfam_DUF3661_TM	-	no_errors	TMEM110	HGNC	ENSG00000213533				56	0	0	56	10	15.1515
CACNA1D	0	genome.wustl.edu	37	3	53700399	53700399	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	3	53700399	53700399	C	T	SNP	CACNA1D	ENST00000288139	human	ensembl	74_37	+1	known	missense	c.953	p.A318V	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su,prints_LVDCC_a1dsu	-	no_errors	CACNA1D	HGNC	ENSG00000157388				232	0	0	242	41	14.4876
ERC2	0	genome.wustl.edu	37	3	56044541	56044541	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	3	56044541	56044541	C	T	SNP	ERC2	ENST00000288221	human	ensembl	74_37	-1	known	missense	c.1856	p.R619Q	1.000	pfam_CAZ_cplx_RIM-bd_prot,superfamily_Prefoldin	pfam_CAZ_cplx_RIM-bd_prot,superfamily_Prefoldin	-	no_errors	ERC2	HGNC	ENSG00000187672				232	0	0	196	30	13.2743
ATXN7	0	genome.wustl.edu	37	3	63965643	63965643	+	Silent	SNP	A	A	G			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	3	63965643	63965643	A	G	SNP	ATXN7	ENST00000398590	human	ensembl	74_37	+1	known	silent	c.552	p.S184	0.998	NULL	pfam_SCA7_dom	-	no_errors	ATXN7	HGNC	ENSG00000163635				101	0	0	100	18	15.2542
PDZRN3	0	genome.wustl.edu	37	3	73433966	73433966	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	3	73433966	73433966	G	T	SNP	PDZRN3	ENST00000263666	human	ensembl	74_37	-1	known	nonsense	c.1751	p.S584*	1.000	NULL	pfam_PDZ,pfam_Znf_C3HC4_RING-type,superfamily_PDZ,superfamily_TRAF-like,smart_Znf_RING,smart_PDZ,pfscan_PDZ,pfscan_Znf_RING,pfscan_Znf_TRAF	-	no_errors	PDZRN3	HGNC	ENSG00000121440				68	0	0	51	6	10.5263
CNTN3	0	genome.wustl.edu	37	3	74474047	74474047	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	3	74474047	74474047	G	A	SNP	CNTN3	ENST00000263665	human	ensembl	74_37	-1	known	missense	c.403	p.R135C	1.000	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CNTN3	HGNC	ENSG00000113805				53	0	0	48	7	12.7273
EPHA6	0	genome.wustl.edu	37	3	96962894	96962894	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	3	96962894	96962894	C	G	SNP	EPHA6	ENST00000389672	human	ensembl	74_37	+1	known	missense	c.1369	p.L457V	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Growth_fac_rcpt_N_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	EPHA6	HGNC	ENSG00000080224				48	0	0	60	5	7.69231
OR5AC2	0	genome.wustl.edu	37	3	97806749	97806749	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	3	97806749	97806749	G	A	SNP	OR5AC2	ENST00000358642	human	ensembl	74_37	+1	known	missense	c.733	p.A245T	0.535	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5AC2	HGNC	ENSG00000196578				71	0	0	86	11	11.3402
CAMK1	0	genome.wustl.edu	37	3	9802450	9802450	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	3	9802450	9802450	A	G	SNP	CAMK1	ENST00000256460	human	ensembl	74_37	-1	known	missense	c.635	p.L212P	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CAMK1	HGNC	ENSG00000134072				65	0	0	50	9	15.2542
UGT8	0	genome.wustl.edu	37	4	115544174	115544174	+	Silent	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	4	115544174	115544174	C	T	SNP	UGT8	ENST00000310836	human	ensembl	74_37	+1	known	silent	c.138	p.H46	0.547	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT8	HGNC	ENSG00000174607				70	0	0	56	10	15.1515
NDST3	0	genome.wustl.edu	37	4	119176867	119176867	+	Nonstop_Mutation	SNP	G	G	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	4	119176867	119176867	G	T	SNP	NDST3	ENST00000296499	human	ensembl	74_37	+1	known	nonstop	c.2622	p.*874Y	1.000	NULL	pfam_Heparan_SO4_deacetylase,pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	NDST3	HGNC	ENSG00000164100				40	0	0	41	4	8.88889
FAT4	0	genome.wustl.edu	37	4	126389938	126389938	+	Silent	SNP	A	A	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	4	126389938	126389938	A	T	SNP	FAT4	ENST00000394329	human	ensembl	74_37	+1	known	silent	c.12171	p.G4057	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159				124	0	0	120	16	11.7647
UVSSA	0	genome.wustl.edu	37	4	1343557	1343557	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	4	1343557	1343557	G	A	SNP	UVSSA	ENST00000389851	human	ensembl	74_37	+1	known	missense	c.344	p.R115Q	0.003	superfamily_ENTH_VHS	pfam_DUF2043,superfamily_ENTH_VHS	-	no_errors	UVSSA	HGNC	ENSG00000163945				48	0	0	47	4	7.84314
POU4F2	0	genome.wustl.edu	37	4	147561536	147561536	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	4	147561536	147561536	G	A	SNP	POU4F2	ENST00000281321	human	ensembl	74_37	+1	known	missense	c.806	p.R269H	1.000	pfam_POU_specific,superfamily_Lambda_DNA-bd_dom,smart_POU_specific,pfscan_POU_specific,prints_POU	pfam_POU_specific,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_POU_specific,prints_POU	-	no_errors	POU4F2	HGNC	ENSG00000151615				49	0	0	45	5	10
SFRP2	0	genome.wustl.edu	37	4	154709838	154709838	+	Silent	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	4	154709838	154709838	G	A	SNP	SFRP2	ENST00000274063	human	ensembl	74_37	-1	known	silent	c.150	p.C50	1.000	pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom	pfam_Frizzled_dom,pfam_Netrin_module_non-TIMP,superfamily_Frizzled_dom,superfamily_TIMP-like_OB-fold,smart_Frizzled_dom,smart_Netrin_module_non-TIMP,pfscan_Frizzled_dom,pfscan_Netrin_domain	-	no_errors	SFRP2	HGNC	ENSG00000145423				176	0	0	119	11	8.46154
DDX60	0	genome.wustl.edu	37	4	169227857	169227857	+	Silent	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	4	169227857	169227857	C	T	SNP	DDX60	ENST00000393743	human	ensembl	74_37	-1	known	silent	c.279	p.A93	0.001	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX60	HGNC	ENSG00000137628				47	0	0	57	9	13.6364
TRAPPC11	0	genome.wustl.edu	37	4	184622881	184622881	+	Silent	SNP	A	A	G			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	4	184622881	184622881	A	G	SNP	TRAPPC11	ENST00000334690	human	ensembl	74_37	+1	known	silent	c.2883	p.E961	0.939	NULL	pfam_Foie-gras_1,pfam_DUF1683_C	-	no_errors	TRAPPC11	HGNC	ENSG00000168538				67	0	0	46	19	29.2308
SEL1L3	0	genome.wustl.edu	37	4	25849011	25849011	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	4	25849011	25849011	C	T	SNP	SEL1L3	ENST00000399878	human	ensembl	74_37	-1	known	missense	c.638	p.R213H	1.000	NULL	pfam_Sel1-like,superfamily_ConA-like_lec_gl_sf,smart_Sel1-like	-	no_errors	SEL1L3	HGNC	ENSG00000091490				89	0	0	98	20	16.9492
GRXCR1	0	genome.wustl.edu	37	4	42965093	42965093	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	4	42965093	42965093	G	A	SNP	GRXCR1	ENST00000399770	human	ensembl	74_37	+1	known	missense	c.569	p.R190Q	0.954	pfam_Glutaredoxin,superfamily_Thioredoxin-like_fold	pfam_Glutaredoxin,superfamily_Thioredoxin-like_fold,superfamily_HSP_DnaJ_Cys-rich_dom	-	no_errors	GRXCR1	HGNC	ENSG00000215203				505	0	0	512	34	6.22711
ATP10D	0	genome.wustl.edu	37	4	47593216	47593216	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	4	47593216	47593216	T	A	SNP	ATP10D	ENST00000273859	human	ensembl	74_37	+1	known	missense	c.4099	p.S1367T	0.000	NULL	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP10D	HGNC	ENSG00000145246				155	1	0.641026	142	22	13.4146
FRYL	0	genome.wustl.edu	37	4	48545898	48545898	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	4	48545898	48545898	G	C	SNP	FRYL	ENST00000358350	human	ensembl	74_37	-1	known	missense	c.5518	p.L1840V	0.999	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	FRYL	HGNC	ENSG00000075539				102	0	0	65	8	10.9589
SRD5A3	0	genome.wustl.edu	37	4	56233814	56233814	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	4	56233814	56233814	A	G	SNP	SRD5A3	ENST00000264228	human	ensembl	74_37	+1	known	missense	c.622	p.M208V	0.254	pfam_3-oxo-5_a-steroid_4-DH_C,pfscan_3-oxo-5_a-steroid_4-DH_C	pfam_3-oxo-5_a-steroid_4-DH_C,pfscan_3-oxo-5_a-steroid_4-DH_C	-	no_errors	SRD5A3	HGNC	ENSG00000128039				72	0	0	75	19	20.2128
JAKMIP1	0	genome.wustl.edu	37	4	6080672	6080672	+	Silent	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	4	6080672	6080672	C	T	SNP	JAKMIP1	ENST00000409021	human	ensembl	74_37	-1	known	silent	c.1296	p.P432	0.043	NULL	NULL	-	no_errors	JAKMIP1	HGNC	ENSG00000152969				81	0	0	69	9	11.5385
LPHN3	0	genome.wustl.edu	37	4	62845287	62845287	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	4	62845287	62845287	G	T	SNP	LPHN3	ENST00000507625	human	ensembl	74_37	+1	known	missense	c.2812	p.D938Y	1.000	NULL	pfam_GPCR_2_latrophilin_rcpt_C,pfam_Olfac-like,pfam_DUF3497,pfam_GPCR_2_secretin-like,pfam_Lectin_gal-bd_dom,pfam_GPS_dom,pfam_GPCR_2_extracellular_dom,smart_Olfac-like,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_Lectin_gal-bd_dom,pfscan_Olfac-like,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_latrophilin,prints_GPCR_2_secretin-like	-	no_errors	LPHN3	HGNC	ENSG00000150471				311	1	0.320513	292	44	13.0952
BMP2K	0	genome.wustl.edu	37	4	79832739	79832739	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	4	79832739	79832739	G	A	SNP	BMP2K	ENST00000335016	human	ensembl	74_37	+1	known	missense	c.3038	p.R1013H	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	BMP2K	HGNC	ENSG00000138756				109	1	0.909091	70	11	13.5802
CPZ	0	genome.wustl.edu	37	4	8613861	8613861	+	Silent	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	4	8613861	8613861	C	T	SNP	CPZ	ENST00000360986	human	ensembl	74_37	+1	known	silent	c.1335	p.N445	0.993	pfam_Peptidase_M14,smart_Peptidase_M14	pfam_Peptidase_M14,pfam_Frizzled_dom,superfamily_Frizzled_dom,superfamily_CarboxyPept-like_regulatory,smart_Frizzled_dom,smart_Peptidase_M14,prints_Peptidase_M14,pfscan_Frizzled_dom	-	no_errors	CPZ	HGNC	ENSG00000109625				45	0	0	29	4	12.1212
AFF1	0	genome.wustl.edu	37	4	88035905	88035905	+	Silent	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	4	88035905	88035905	C	T	SNP	AFF1	ENST00000395146	human	ensembl	74_37	+1	known	silent	c.1920	p.G640	0.017	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF1	HGNC	ENSG00000172493				95	0	0	90	17	15.8879
DSPP	0	genome.wustl.edu	37	4	88535421	88535421	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	4	88535421	88535421	A	G	SNP	DSPP	ENST00000282478	human	ensembl	74_37	+1	known	missense	c.1607	p.D536G	0.005	NULL	NULL	-	no_errors	DSPP	HGNC	ENSG00000152591				42	0	0	31	10	24.3902
AQPEP	0	genome.wustl.edu	37	5	115339034	115339034	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	5	115339034	115339034	T	C	SNP	AQPEP	ENST00000357872	human	ensembl	74_37	+1	known	missense	c.1994	p.L665S	0.034	NULL	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	AQPEP	Uniprot_gn	ENSG00000172901				100	0	0	95	13	12.037
ANKHD1	0	genome.wustl.edu	37	5	139905707	139905707	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	5	139905707	139905707	G	A	SNP	ANKHD1	ENST00000297183	human	ensembl	74_37	+1	known	missense	c.4619	p.S1540N	1.000	NULL	pfam_Ankyrin_rpt,pfam_KH_dom_type_1,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_KH_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_KH_dom_type_1,prints_Ankyrin_rpt	-	no_errors	ANKHD1	HGNC	ENSG00000131503				225	0	0	213	23	9.74576
ANKHD1	0	genome.wustl.edu	37	5	139909045	139909045	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	5	139909045	139909045	G	T	SNP	ANKHD1	ENST00000297183	human	ensembl	74_37	+1	known	missense	c.6514	p.G2172C	1.000	NULL	pfam_Ankyrin_rpt,pfam_KH_dom_type_1,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_KH_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_KH_dom_type_1,prints_Ankyrin_rpt	-	no_errors	ANKHD1	HGNC	ENSG00000131503				200	0	0	214	29	11.9342
IK	0	genome.wustl.edu	37	5	140039372	140039372	+	Silent	SNP	C	C	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	5	140039372	140039372	C	A	SNP	IK	ENST00000417647	human	ensembl	74_37	+1	known	silent	c.1227	p.S409	0.810	NULL	pfam_RED_N,pfam_RED_C	-	no_errors	IK	HGNC	ENSG00000113141				16	0	0	15	3	16.6667
PCDHB6	0	genome.wustl.edu	37	5	140531705	140531705	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	5	140531705	140531705	C	T	SNP	PCDHB6	ENST00000231136	human	ensembl	74_37	+1	known	missense	c.1867	p.R623C	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB6	HGNC	ENSG00000113211				91	0	0	80	16	16.6667
FBXO38	0	genome.wustl.edu	37	5	147803681	147803681	+	Splice_Site	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	5	147803681	147803681	G	A	SNP	FBXO38	ENST00000340253	human	ensembl	74_37	+1	known	splice_site	c.1738+1	e12+1	1.000	-	-	-	no_errors	FBXO38	HGNC	ENSG00000145868				98	0	0	64	13	16.8831
LPCAT1	0	genome.wustl.edu	37	5	1489881	1489881	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	5	1489881	1489881	A	G	SNP	LPCAT1	ENST00000283415	human	ensembl	74_37	-1	known	missense	c.586	p.S196P	1.000	pfam_Plipid/glycerol_acylTrfase,smart_Plipid/glycerol_acylTrfase	pfam_Plipid/glycerol_acylTrfase,smart_Plipid/glycerol_acylTrfase,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	LPCAT1	HGNC	ENSG00000153395				306	0	0	266	41	13.355
FABP6	0	genome.wustl.edu	37	5	159659135	159659135	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	5	159659135	159659135	G	A	SNP	FABP6	ENST00000393980	human	ensembl	74_37	+1	known	missense	c.245	p.R82H	0.956	superfamily_Calycin-like	superfamily_Calycin-like,prints_Fatty_acid-bd	-	no_errors	FABP6	HGNC	ENSG00000170231				57	0	0	51	4	7.27273
DOCK2	0	genome.wustl.edu	37	5	169174437	169174437	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	5	169174437	169174437	T	A	SNP	DOCK2	ENST00000256935	human	ensembl	74_37	+1	known	missense	c.2305	p.S769T	1.000	superfamily_ARM-type_fold	pfam_DOCK_C,pfam_SH3_2,superfamily_SH3_domain,superfamily_Cyt_c-like_dom,superfamily_ARM-type_fold,superfamily_Ferritin-like_SF,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK2	HGNC	ENSG00000134516				63	0	0	43	9	17.3077
UIMC1	0	genome.wustl.edu	37	5	176333041	176333041	+	Silent	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	5	176333041	176333041	G	A	SNP	UIMC1	ENST00000377219	human	ensembl	74_37	-1	known	silent	c.1923	p.D641	0.325	NULL	smart_Ubiquitin-int_motif,pfscan_Ubiquitin-int_motif	-	no_errors	UIMC1	HGNC	ENSG00000087206				55	0	0	53	4	7.01754
CDH18	0	genome.wustl.edu	37	5	19571802	19571802	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	5	19571802	19571802	G	C	SNP	CDH18	ENST00000274170	human	ensembl	74_37	-1	known	missense	c.1139	p.P380R	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH18	HGNC	ENSG00000145526				67	0	0	66	6	8.33333
RXFP3	0	genome.wustl.edu	37	5	33938026	33938026	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	5	33938026	33938026	G	A	SNP	RXFP3	ENST00000330120	human	ensembl	74_37	+1	known	missense	c.1181	p.R394H	1.000	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Formyl_pep_rcpt	-	no_errors	RXFP3	HGNC	ENSG00000182631				122	1	0.813008	111	11	9.01639
UGT3A2	0	genome.wustl.edu	37	5	36049272	36049272	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	5	36049272	36049272	G	A	SNP	UGT3A2	ENST00000282507	human	ensembl	74_37	-1	known	missense	c.562	p.R188C	0.000	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT3A2	HGNC	ENSG00000168671				91	0	0	96	7	6.79612
NIPBL	0	genome.wustl.edu	37	5	37006531	37006531	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	5	37006531	37006531	G	A	SNP	NIPBL	ENST00000282516	human	ensembl	74_37	+1	known	missense	c.3928	p.A1310T	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	NIPBL	HGNC	ENSG00000164190				54	0	0	58	15	20.5479
NUP155	0	genome.wustl.edu	37	5	37314427	37314427	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	5	37314427	37314427	G	T	SNP	NUP155	ENST00000231498	human	ensembl	74_37	-1	known	missense	c.2309	p.A770D	1.000	pfam_Nucleoporin_Nup133/Nup155_C	pfam_Nucleoporin_Nup133/Nup155_C,pfam_Nucleoporin_Nup133/Nup155_N,superfamily_WD40_repeat_dom	-	no_errors	NUP155	HGNC	ENSG00000113569				46	0	0	32	6	15.7895
ARHGEF28	0	genome.wustl.edu	37	5	73205302	73205302	+	Silent	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	5	73205302	73205302	C	T	SNP	ARHGEF28	ENST00000545377	human	ensembl	74_37	+1	known	silent	c.4227	p.G1409	0.070	NULL	pfam_DH-domain,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_DH-domain,superfamily_Ankyrin_rpt-contain_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain	-	no_errors	ARHGEF28	HGNC	ENSG00000214944				33	0	0	34	8	19.0476
F2RL2	0	genome.wustl.edu	37	5	75914009	75914009	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	5	75914009	75914009	C	T	SNP	F2RL2	ENST00000296641	human	ensembl	74_37	-1	known	missense	c.523	p.G175S	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Prot_act_rcpt_3,prints_GPCR_Rhodpsn,prints_Protea_act_rcpt	-	no_errors	F2RL2	HGNC	ENSG00000164220				94	0	0	63	19	23.1707
GPR98	0	genome.wustl.edu	37	5	90074728	90074728	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	5	90074728	90074728	G	A	SNP	GPR98	ENST00000405460	human	ensembl	74_37	+1	known	missense	c.12896	p.R4299Q	0.496	pfam_Calx_beta,smart_Calx_beta	pfam_Calx_beta,pfam_EPTP,pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Gal_Oxase/kelch_b-propeller,smart_Calx_beta,pfscan_EAR,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR98	HGNC	ENSG00000164199				222	1	0.44843	176	24	12
NR2F1	0	genome.wustl.edu	37	5	92921019	92921019	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	5	92921019	92921019	A	G	SNP	NR2F1	ENST00000327111	human	ensembl	74_37	+1	known	missense	c.290	p.H97R	1.000	pfam_Znf_hrmn_rcpt,smart_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt,prints_Znf_hrmn_rcpt	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_COUP_TF,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Retinoid-X_rcpt/HNF4	-	no_errors	NR2F1	HGNC	ENSG00000175745				26	0	0	20	4	16.6667
LNPEP	0	genome.wustl.edu	37	5	96341852	96341852	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	5	96341852	96341852	G	A	SNP	LNPEP	ENST00000231368	human	ensembl	74_37	+1	known	missense	c.1861	p.V621I	1.000	NULL	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	LNPEP	HGNC	ENSG00000113441				82	0	0	80	8	9.09091
PRDM13	0	genome.wustl.edu	37	6	100062155	100062155	+	Silent	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	6	100062155	100062155	G	A	SNP	PRDM13	ENST00000369215	human	ensembl	74_37	+1	known	silent	c.1644	p.P548	0.009	NULL	smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM13	HGNC	ENSG00000112238				32	0	0	24	4	14.2857
HIVEP1	0	genome.wustl.edu	37	6	12122709	12122709	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	6	12122709	12122709	G	A	SNP	HIVEP1	ENST00000379388	human	ensembl	74_37	+1	known	missense	c.2681	p.R894H	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP1	HGNC	ENSG00000095951				117	0	0	121	19	13.5714
RNF217	0	genome.wustl.edu	37	6	125366443	125366443	+	Silent	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	6	125366443	125366443	G	A	SNP	RNF217	ENST00000560949	human	ensembl	74_37	+1	known	silent	c.264	p.T88	0.305	NULL	pfam_Znf_C6HC,smart_Znf_C6HC	-	no_errors	RNF217	HGNC	ENSG00000146373				75	0	0	75	7	8.53659
GFOD1	0	genome.wustl.edu	37	6	13486905	13486905	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	6	13486905	13486905	G	A	SNP	GFOD1	ENST00000379287	human	ensembl	74_37	-1	known	missense	c.218	p.P73L	1.000	pfam_Oxidoreductase_N	pfam_Oxidoreductase_N,pfam_OxRdtase_C	-	no_errors	GFOD1	HGNC	ENSG00000145990				94	0	0	76	6	7.31707
HECA	0	genome.wustl.edu	37	6	139487805	139487805	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	6	139487805	139487805	C	A	SNP	HECA	ENST00000367658	human	ensembl	74_37	+1	known	missense	c.656	p.A219E	0.000	NULL	superfamily_Glycoside_hydrolase_SF	-	no_errors	HECA	HGNC	ENSG00000112406				44	0	0	46	3	6.12245
UTRN	0	genome.wustl.edu	37	6	144812155	144812155	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	6	144812155	144812155	G	A	SNP	UTRN	ENST00000367545	human	ensembl	74_37	+1	known	missense	c.4354	p.D1452N	1.000	smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_dom,superfamily_CH-domain,superfamily_WW_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_dom,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_dom,pfscan_Znf_ZZ	-	no_errors	UTRN	HGNC	ENSG00000152818				149	0	0	120	14	10.4478
SNX9	0	genome.wustl.edu	37	6	158349643	158349643	+	Silent	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	6	158349643	158349643	C	T	SNP	SNX9	ENST00000392185	human	ensembl	74_37	+1	known	silent	c.1197	p.C399	0.983	pfam_Sorting_nexin_WASP-bd-dom,pirsf_Snx9	pfam_Sorting_nexin_WASP-bd-dom,pfam_Phox,pfam_SH3_domain,pfam_SH3_2,superfamily_Phox,superfamily_SH3_domain,smart_SH3_domain,smart_Phox,pirsf_Snx9,pfscan_Phox,pfscan_SH3_domain	-	no_errors	SNX9	HGNC	ENSG00000130340				17	0	0	13	3	18.75
SNX9	0	genome.wustl.edu	37	6	158349700	158349700	+	Silent	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	6	158349700	158349700	G	A	SNP	SNX9	ENST00000392185	human	ensembl	74_37	+1	known	silent	c.1254	p.T418	1.000	pfam_Sorting_nexin_WASP-bd-dom,pirsf_Snx9	pfam_Sorting_nexin_WASP-bd-dom,pfam_Phox,pfam_SH3_domain,pfam_SH3_2,superfamily_Phox,superfamily_SH3_domain,smart_SH3_domain,smart_Phox,pirsf_Snx9,pfscan_Phox,pfscan_SH3_domain	-	no_errors	SNX9	HGNC	ENSG00000130340				25	0	0	18	2	10
SLC22A1	0	genome.wustl.edu	37	6	160543054	160543054	+	Silent	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	6	160543054	160543054	G	A	SNP	SLC22A1	ENST00000366963	human	ensembl	74_37	+1	known	silent	c.87	p.S29	0.000	tigrfam_Orgcat_transp	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	-	no_errors	SLC22A1	HGNC	ENSG00000175003				197	0	0	158	29	15.508
RPS6KA2	0	genome.wustl.edu	37	6	166844007	166844007	+	Silent	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	6	166844007	166844007	C	T	SNP	RPS6KA2	ENST00000510118	human	ensembl	74_37	-1	known	silent	c.1590	p.S530	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase_II,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	RPS6KA2	HGNC	ENSG00000071242				98	0	0	70	14	16.6667
TRIM26	0	genome.wustl.edu	37	6	30166571	30166571	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	6	30166571	30166571	G	A	SNP	TRIM26	ENST00000437089	human	ensembl	74_37	-1	known	nonsense	c.310	p.R104*	0.327	pfam_Znf_B-box,smart_Znf_B-box,pfscan_Znf_B-box	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM26	HGNC	ENSG00000234127				111	0	0	81	21	20.5882
MDC1	0	genome.wustl.edu	37	6	30670948	30670948	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	6	30670948	30670948	C	T	SNP	MDC1	ENST00000376406	human	ensembl	74_37	-1	known	missense	c.5798	p.R1933Q	0.998	superfamily_BRCT_dom,pfscan_BRCT_dom	pfam_FHA_dom,superfamily_BRCT_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_BRCT_dom,pfscan_FHA_dom	-	no_errors	MDC1	HGNC	ENSG00000137337				68	0	0	46	11	19.2982
HLA-DPB1	0	genome.wustl.edu	37	6	33052994	33052994	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	6	33052994	33052994	T	C	SNP	HLA-DPB1	ENST00000418931	human	ensembl	74_37	+1	known	missense	c.632	p.V211A	0.193	pfam_Ig_C1-set,pfscan_Ig-like_dom	pfam_MHC_II_b_N,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_b_N,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	HLA-DPB1	HGNC	ENSG00000223865				93	0	0	66	9	12
ZBTB22	0	genome.wustl.edu	37	6	33283621	33283621	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	6	33283621	33283621	A	G	SNP	ZBTB22	ENST00000418724	human	ensembl	74_37	-1	known	missense	c.1073	p.I358T	0.672	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB22	HGNC	ENSG00000236104				133	0	0	89	21	19.0909
SYNGAP1	0	genome.wustl.edu	37	6	33411173	33411173	+	Silent	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	6	33411173	33411173	C	T	SNP	SYNGAP1	ENST00000418600	human	ensembl	74_37	+1	known	silent	c.2844	p.G948	0.001	pfam_DUF3498	pfam_DUF3498,pfam_RasGAP,pfam_C2_dom,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_Pleckstrin_homology,smart_C2_dom,smart_RasGAP,pfscan_Pleckstrin_homology,pfscan_RasGAP	-	no_errors	SYNGAP1	HGNC	ENSG00000197283				248	0	0	193	34	14.978
ITPR3	0	genome.wustl.edu	37	6	33631536	33631536	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	6	33631536	33631536	C	T	SNP	ITPR3	ENST00000374316	human	ensembl	74_37	+1	known	missense	c.1027	p.R343C	1.000	pfam_MIR_motif,superfamily_MIR_motif,smart_MIR_motif	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ARM-type_fold,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR3	HGNC	ENSG00000096433				67	0	0	52	7	11.8644
FGD2	0	genome.wustl.edu	37	6	36982747	36982747	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	6	36982747	36982747	T	A	SNP	FGD2	ENST00000274963	human	ensembl	74_37	+1	known	missense	c.962	p.L321H	1.000	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,pfam_Znf_FYVE,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_Znf_FYVE_PHD,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD2	HGNC	ENSG00000146192				76	0	0	49	11	18.3333
TRERF1	0	genome.wustl.edu	37	6	42204045	42204045	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	6	42204045	42204045	C	A	SNP	TRERF1	ENST00000541110	human	ensembl	74_37	-1	known	missense	c.3024	p.E1008D	1.000	NULL	pfam_ELM2_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_SANT/Myb,pfscan_ELM2_dom,pfscan_Znf_C2H2	-	no_errors	TRERF1	HGNC	ENSG00000124496				38	0	0	27	4	12.9032
KLHDC3	0	genome.wustl.edu	37	6	42985306	42985306	+	Silent	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	6	42985306	42985306	G	A	SNP	KLHDC3	ENST00000326974	human	ensembl	74_37	+1	known	silent	c.204	p.G68	0.993	NULL	pfam_Kelch_2,pfam_Kelch_1	-	no_errors	KLHDC3	HGNC	ENSG00000124702				101	1	0.980392	58	17	22.6667
CLIC5	0	genome.wustl.edu	37	6	45917038	45917038	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	6	45917038	45917038	A	G	SNP	CLIC5	ENST00000185206	human	ensembl	74_37	-1	known	missense	c.731	p.V244A	1.000	superfamily_Thioredoxin-like_fold,prints_Int_Cl_channel,tigrfam_Int_Cl_channel	superfamily_Glutathione-S-Trfase_C-like,superfamily_Thioredoxin-like_fold,prints_Int_Cl_channel,tigrfam_Int_Cl_channel	-	no_errors	CLIC5	HGNC	ENSG00000112782				224	0	0	182	29	13.7441
GPR116	0	genome.wustl.edu	37	6	46828548	46828548	+	Silent	SNP	A	A	G			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	6	46828548	46828548	A	G	SNP	GPR116	ENST00000265417	human	ensembl	74_37	-1	known	silent	c.2283	p.H761	0.005	NULL	pfam_GPCR_2_secretin-like,pfam_SEA_dom,pfam_GPS_dom,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,pfscan_Ig-like_dom,prints_GPCR_2_Ig-hepta_rcpt,prints_GPCR_2_secretin-like	-	no_errors	GPR116	HGNC	ENSG00000069122				93	0	0	72	7	8.86076
GPR110	0	genome.wustl.edu	37	6	46977701	46977701	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	6	46977701	46977701	A	C	SNP	GPR110	ENST00000371253	human	ensembl	74_37	-1	known	missense	c.1470	p.I490M	0.080	NULL	pfam_GPCR_2_secretin-like,pfam_SEA_dom,pfam_GPS_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like,prints_GPCR_2_Ig-hepta_rcpt	-	no_errors	GPR110	HGNC	ENSG00000153292				106	0	0	97	15	13.3929
TINAG	0	genome.wustl.edu	37	6	54212228	54212228	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	6	54212228	54212228	A	G	SNP	TINAG	ENST00000259782	human	ensembl	74_37	+1	known	missense	c.812	p.Q271R	1.000	pfam_Peptidase_C1A_C,smart_Peptidase_C1A_C	pfam_Peptidase_C1A_C,pfam_Somatomedin_B_dom,smart_Somatomedin_B_dom,smart_Peptidase_C1A_C,pfscan_Somatomedin_B_dom	-	no_errors	TINAG	HGNC	ENSG00000137251				68	0	0	62	5	7.46269
F13A1	0	genome.wustl.edu	37	6	6266932	6266932	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	6	6266932	6266932	G	A	SNP	F13A1	ENST00000264870	human	ensembl	74_37	-1	known	missense	c.430	p.R144W	0.999	pfam_Transglutaminase_N,superfamily_Ig_E-set	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	F13A1	HGNC	ENSG00000124491				83	0	0	73	14	16.092
IBTK	0	genome.wustl.edu	37	6	82936995	82936995	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	6	82936995	82936995	C	T	SNP	IBTK	ENST00000306270	human	ensembl	74_37	-1	known	missense	c.568	p.V190M	1.000	pfam_Reg_chr_condens,superfamily_RCC1/BLIP-II,pfscan_Reg_chr_condens	pfam_Reg_chr_condens,pfam_BTB_POZ,pfam_Ankyrin_rpt,superfamily_RCC1/BLIP-II,superfamily_BTB/POZ_fold,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_BTB/POZ-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_BTB/POZ-like,pfscan_Reg_chr_condens	-	no_errors	IBTK	HGNC	ENSG00000005700				114	0	0	114	16	12.3077
ZNF292	0	genome.wustl.edu	37	6	87953265	87953265	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	6	87953265	87953265	G	A	SNP	ZNF292	ENST00000369577	human	ensembl	74_37	+1	known	missense	c.814	p.A272T	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF292	HGNC	ENSG00000188994				11	0	0	7	3	30
FUT9	0	genome.wustl.edu	37	6	96651800	96651800	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	6	96651800	96651800	C	A	SNP	FUT9	ENST00000302103	human	ensembl	74_37	+1	known	missense	c.769	p.L257I	1.000	pfam_Glyco_trans_10	pfam_Glyco_trans_10	-	no_errors	FUT9	HGNC	ENSG00000172461				50	0	0	43	12	21.8182
MUC17	0	genome.wustl.edu	37	7	100682329	100682329	+	Silent	SNP	T	T	C			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	7	100682329	100682329	T	C	SNP	MUC17	ENST00000306151	human	ensembl	74_37	+1	known	silent	c.7632	p.S2544	0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_EG-like_dom,pfscan_SEA_dom	-	no_errors	MUC17	HGNC	ENSG00000169876				603	1	0.165563	464	76	14.0741
DNAJC2	0	genome.wustl.edu	37	7	102953432	102953432	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	7	102953432	102953432	G	A	SNP	DNAJC2	ENST00000379263	human	ensembl	74_37	-1	known	missense	c.1753	p.P585S	1.000	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	pfam_SANT/Myb,pfam_DnaJ_domain,superfamily_DnaJ_domain,superfamily_Homeodomain-like,smart_DnaJ_domain,smart_SANT/Myb,pfscan_Myb-like_dom,pfscan_DnaJ_domain	-	no_errors	DNAJC2	HGNC	ENSG00000105821				267	0	0	226	39	14.717
LAMB1	0	genome.wustl.edu	37	7	107577640	107577640	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	7	107577640	107577640	C	T	SNP	LAMB1	ENST00000222399	human	ensembl	74_37	-1	known	missense	c.3844	p.A1282T	0.413	superfamily_t-SNARE	pfam_EGF_laminin,pfam_Laminin_N,superfamily_Prefoldin,superfamily_t-SNARE,superfamily_P-loop_NTPase,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,pfscan_Laminin_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB1	HGNC	ENSG00000091136				182	0	0	161	32	16.5803
TMEM168	0	genome.wustl.edu	37	7	112423832	112423832	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	7	112423832	112423832	C	T	SNP	TMEM168	ENST00000312814	human	ensembl	74_37	-1	known	missense	c.1049	p.R350H	1.000	superfamily_ConA-like_lec_gl_sf	superfamily_ConA-like_lec_gl_sf	-	no_errors	TMEM168	HGNC	ENSG00000146802				248	0	0	261	22	7.77385
BPGM	0	genome.wustl.edu	37	7	134346677	134346677	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	7	134346677	134346677	C	T	SNP	BPGM	ENST00000344924	human	ensembl	74_37	+1	known	missense	c.418	p.R140W	1.000	pfam_His_Pase_superF_clade-1,smart_His_Pase_superF_clade-1,tigrfam_Phosphogly_mut1	pfam_His_Pase_superF_clade-1,smart_His_Pase_superF_clade-1,tigrfam_Phosphogly_mut1	-	no_errors	BPGM	HGNC	ENSG00000172331				97	0	0	75	17	18.4783
CNOT4	0	genome.wustl.edu	37	7	135079001	135079001	+	Silent	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	7	135079001	135079001	C	T	SNP	CNOT4	ENST00000541284	human	ensembl	74_37	-1	known	silent	c.1296	p.S432	0.458	NULL	pfam_RRM_dom,smart_RRM_dom_euk,pfscan_Znf_RING,pfscan_RRM_dom	-	no_errors	CNOT4	HGNC	ENSG00000080802				145	0	0	139	13	8.55263
SVOPL	0	genome.wustl.edu	37	7	138312915	138312915	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	7	138312915	138312915	C	T	SNP	SVOPL	ENST00000288513	human	ensembl	74_37	-1	known	missense	c.601	p.G201S	0.854	pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SVOPL	HGNC	ENSG00000157703				154	0	0	128	21	14.094
ATP6V0A4	0	genome.wustl.edu	37	7	138437555	138437555	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	7	138437555	138437555	G	A	SNP	ATP6V0A4	ENST00000310018	human	ensembl	74_37	-1	known	nonsense	c.844	p.Q282*	1.000	pfam_V-ATPase_116kDa_su	pfam_V-ATPase_116kDa_su	-	no_errors	ATP6V0A4	HGNC	ENSG00000105929				92	0	0	76	13	14.6067
EPHB6	0	genome.wustl.edu	37	7	142566336	142566336	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	7	142566336	142566336	G	A	SNP	EPHB6	ENST00000392957	human	ensembl	74_37	+1	known	missense	c.2125	p.A709T	0.095	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_2,pfam_SAM_type1,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHB6	HGNC	ENSG00000106123				42	0	0	35	5	12.5
ZNF425	0	genome.wustl.edu	37	7	148802270	148802270	+	Silent	SNP	G	G	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	7	148802270	148802270	G	T	SNP	ZNF425	ENST00000378061	human	ensembl	74_37	-1	known	silent	c.693	p.S231	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	ZNF425	HGNC	ENSG00000204947				105	0	0	71	14	16.4706
KRBA1	0	genome.wustl.edu	37	7	149416733	149416733	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	7	149416733	149416733	C	T	SNP	KRBA1	ENST00000255992	human	ensembl	74_37	+1	known	missense	c.4	p.R2W	1.000	NULL	NULL	-	no_errors	KRBA1	HGNC	ENSG00000133619				45	0	0	38	7	15.5556
ZNF862	0	genome.wustl.edu	37	7	149547305	149547305	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	7	149547305	149547305	C	T	SNP	ZNF862	ENST00000223210	human	ensembl	74_37	+1	known	missense	c.995	p.P332L	0.204	superfamily_Krueppel-associated_box	pfam_Krueppel-associated_box,pfam_HATC_dom_C,superfamily_Krueppel-associated_box,superfamily_RNaseH-like_dom,smart_Krueppel-associated_box,smart_Znf_TTF,pfscan_Krueppel-associated_box	-	no_errors	ZNF862	HGNC	ENSG00000106479				24	0	0	14	5	26.3158
ABCB8	0	genome.wustl.edu	37	7	150737926	150737926	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	7	150737926	150737926	G	A	SNP	ABCB8	ENST00000297504	human	ensembl	74_37	+1	known	missense	c.1451	p.R484H	1.000	superfamily_P-loop_NTPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCB8	HGNC	ENSG00000197150				12	0	0	9	2	18.1818
ESYT2	0	genome.wustl.edu	37	7	158560362	158560362	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	7	158560362	158560362	G	A	SNP	ESYT2	ENST00000251527	human	ensembl	74_37	-1	known	missense	c.1051	p.R351W	1.000	superfamily_C2_dom	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	ESYT2	HGNC	ENSG00000117868				110	1	0.900901	95	18	15.9292
MACC1	0	genome.wustl.edu	37	7	20201455	20201455	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	7	20201455	20201455	A	G	SNP	MACC1	ENST00000332878	human	ensembl	74_37	-1	known	missense	c.31	p.S11P	0.000	NULL	pfam_SH3_2,superfamily_DEATH-like_dom	-	no_errors	MACC1	HGNC	ENSG00000183742				136	0	0	139	19	12.0253
PAPOLB	0	genome.wustl.edu	37	7	4900547	4900547	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	7	4900547	4900547	G	A	SNP	PAPOLB	ENST00000404991	human	ensembl	74_37	-1	known	missense	c.892	p.P298S	1.000	pfam_PolA_pol_cen_dom,pirsf_PolyA_polymerase	pfam_PolA_pol_cen_dom,pfam_PolA_pol_RNA-bd_dom,pfam_Nucleotidyltransferase,superfamily_NuclTrfase_I_C,pirsf_PolyA_polymerase	-	no_errors	PAPOLB	HGNC	ENSG00000218823				170	0	0	137	19	12.1795
RNF216	0	genome.wustl.edu	37	7	5752387	5752387	+	Silent	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	7	5752387	5752387	G	A	SNP	RNF216	ENST00000389902	human	ensembl	74_37	-1	known	silent	c.1941	p.A647	0.053	smart_Znf_C6HC	smart_Znf_C6HC	-	no_errors	RNF216	HGNC	ENSG00000011275				60	0	0	36	9	20
AIMP2	0	genome.wustl.edu	37	7	6057478	6057478	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	7	6057478	6057478	G	A	SNP	AIMP2	ENST00000223029	human	ensembl	74_37	+1	known	missense	c.376	p.A126T	1.000	NULL	superfamily_Glutathione-S-Trfase_C-like	-	no_errors	AIMP2	HGNC	ENSG00000106305				40	0	0	22	5	18.5185
COL1A2	0	genome.wustl.edu	37	7	94056959	94056959	+	Silent	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	7	94056959	94056959	C	T	SNP	COL1A2	ENST00000297268	human	ensembl	74_37	+1	known	silent	c.3288	p.G1096	0.460	pfam_Collagen	pfam_Collagen,pfam_Fib_collagen_C,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fib_collagen_C	-	no_errors	COL1A2	HGNC	ENSG00000164692				179	0	0	143	17	10.625
ATP5J2-PTCD1	0	genome.wustl.edu	37	7	99017660	99017660	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	7	99017660	99017660	C	T	SNP	ATP5J2-PTCD1	ENST00000413834	human	ensembl	74_37	-1	known	missense	c.2180	p.R727Q	0.915	NULL	pfam_Pentatricopeptide_repeat,pfam_F1F0-ATPsyn_F_prd,tigrfam_Pentatricopeptide_repeat	-	no_errors	ATP5J2-PTCD1	HGNC	ENSG00000248919				229	0	0	182	34	15.7407
RGS22	0	genome.wustl.edu	37	8	101011627	101011627	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	8	101011627	101011627	A	C	SNP	RGS22	ENST00000360863	human	ensembl	74_37	-1	known	missense	c.2812	p.W938G	1.000	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam	-	no_errors	RGS22	HGNC	ENSG00000132554				52	0	0	69	5	6.75676
MTSS1	0	genome.wustl.edu	37	8	125565501	125565501	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	8	125565501	125565501	C	T	SNP	MTSS1	ENST00000518547	human	ensembl	74_37	-1	known	missense	c.2000	p.G667D	1.000	NULL	pfam_IRSp53/MIM_homology_IMD,pfscan_WH2_dom	-	no_errors	MTSS1	HGNC	ENSG00000170873				174	0	0	154	10	6.09756
FAM135B	0	genome.wustl.edu	37	8	139163507	139163507	+	Silent	SNP	A	A	G			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	8	139163507	139163507	A	G	SNP	FAM135B	ENST00000395297	human	ensembl	74_37	-1	known	silent	c.3211	p.L1071	0.716	NULL	pfam_DUF676_lipase-like,pfam_DUF3657,pfam_PGAP1-like	-	no_errors	FAM135B	HGNC	ENSG00000147724				61	0	0	65	5	7.14286
RHPN1	0	genome.wustl.edu	37	8	144462879	144462879	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	8	144462879	144462879	G	A	SNP	RHPN1	ENST00000289013	human	ensembl	74_37	+1	known	missense	c.1337	p.R446H	0.999	pfam_BRO1_dom,pfscan_BRO1_dom	pfam_BRO1_dom,pfam_HR1_rho-bd,pfam_PDZ,superfamily_PDZ,superfamily_HR1_rho-bd,smart_HR1_rho-bd,smart_PDZ,pfscan_BRO1_dom,pfscan_PDZ	-	no_errors	RHPN1	HGNC	ENSG00000158106				12	0	0	9	3	25
TUSC3	0	genome.wustl.edu	37	8	15519705	15519705	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	8	15519705	15519705	C	A	SNP	TUSC3	ENST00000503731	human	ensembl	74_37	+1	known	missense	c.608	p.A203D	1.000	pfam_OligosaccharylTrfase_OST3/OST6	pfam_OligosaccharylTrfase_OST3/OST6,pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	-	no_errors	TUSC3	HGNC	ENSG00000104723				139	0	0	153	18	10.5263
MYOM2	0	genome.wustl.edu	37	8	2092718	2092718	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	8	2092718	2092718	C	T	SNP	MYOM2	ENST00000262113	human	ensembl	74_37	+1	known	missense	c.4211	p.T1404I	1.000	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	MYOM2	HGNC	ENSG00000036448				132	0	0	123	13	9.55882
DOK2	0	genome.wustl.edu	37	8	21767139	21767139	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	8	21767139	21767139	G	T	SNP	DOK2	ENST00000276420	human	ensembl	74_37	-1	known	missense	c.922	p.R308S	0.289	NULL	pfam_Insln_rcpt_S1,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,pfscan_Pleckstrin_homology,pfscan_Insln_rcpt_S1	-	no_errors	DOK2	HGNC	ENSG00000147443				130	0	0	111	12	9.7561
LOXL2	0	genome.wustl.edu	37	8	23167240	23167240	+	Silent	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	8	23167240	23167240	G	A	SNP	LOXL2	ENST00000389131	human	ensembl	74_37	-1	known	silent	c.1821	p.G607	1.000	pfam_Lysyl_oxidase,prints_Lysyl_oxidase	pfam_Lysyl_oxidase,pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR,prints_Lysyl_oxidase,prints_SRCR	-	no_errors	LOXL2	HGNC	ENSG00000134013				46	0	0	45	4	8.16327
DPYSL2	0	genome.wustl.edu	37	8	26492331	26492331	+	Silent	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	8	26492331	26492331	C	T	SNP	DPYSL2	ENST00000311151	human	ensembl	74_37	+1	known	silent	c.726	p.I242	0.189	pfam_Amidohydro_1,tigrfam_Hydantoinase/dihydroPyrase	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	-	no_errors	DPYSL2	HGNC	ENSG00000092964				132	0	0	148	9	5.73248
RNF122	0	genome.wustl.edu	37	8	33416240	33416240	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	8	33416240	33416240	C	T	SNP	RNF122	ENST00000256257	human	ensembl	74_37	-1	known	missense	c.75	p.M25I	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF122	HGNC	ENSG00000133874				114	0	0	101	6	5.60748
SMIM19	0	genome.wustl.edu	37	8	42407698	42407698	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	8	42407698	42407698	G	A	SNP	SMIM19	ENST00000414154	human	ensembl	74_37	+1	known	missense	c.271	p.D91N	1.000	NULL	NULL	-	no_errors	SMIM19	HGNC	ENSG00000176209				66	0	0	70	7	9.09091
SPIDR	0	genome.wustl.edu	37	8	48625354	48625354	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	8	48625354	48625354	T	C	SNP	SPIDR	ENST00000297423	human	ensembl	74_37	+1	known	missense	c.2108	p.V703A	0.046	NULL	NULL	-	no_errors	SPIDR	HGNC	ENSG00000164808				192	0	0	171	16	8.55615
DNAJC5B	0	genome.wustl.edu	37	8	66988980	66988980	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	8	66988980	66988980	G	A	SNP	DNAJC5B	ENST00000276570	human	ensembl	74_37	+1	known	missense	c.205	p.A69T	0.988	pfam_DnaJ_domain,superfamily_DnaJ_domain,smart_DnaJ_domain,pfscan_DnaJ_domain,prints_DnaJ_domain	pfam_DnaJ_domain,superfamily_DnaJ_domain,smart_DnaJ_domain,pfscan_DnaJ_domain,prints_DnaJ_domain	-	no_errors	DNAJC5B	HGNC	ENSG00000147570				195	0	0	193	27	12.2727
NCOA2	0	genome.wustl.edu	37	8	71071833	71071833	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	8	71071833	71071833	C	T	SNP	NCOA2	ENST00000452400	human	ensembl	74_37	-1	known	missense	c.1031	p.G344D	1.000	superfamily_PAS,pirsf_Nuclear_rcpt_coactivator	pfam_DUF1518,pfam_SRC-1,pfam_Nuc_rcpt_coact_Ncoa-typ,pfam_PAS_fold,superfamily_PAS,superfamily_Nuc_rcpt_coact,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,pirsf_Nuclear_rcpt_coactivator,pfscan_PAS,pfscan_bHLH_dom	-	no_errors	NCOA2	HGNC	ENSG00000140396				149	0	0	154	15	8.87574
LRRCC1	0	genome.wustl.edu	37	8	86042248	86042248	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	8	86042248	86042248	C	T	SNP	LRRCC1	ENST00000360375	human	ensembl	74_37	+1	known	missense	c.1721	p.A574V	0.401	NULL	pfam_Leu-rich_rpt,superfamily_Prefoldin	-	no_errors	LRRCC1	HGNC	ENSG00000133739				128	0	0	133	16	10.7383
DCAF4L2	0	genome.wustl.edu	37	8	88885339	88885339	+	Silent	SNP	T	T	C			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	8	88885339	88885339	T	C	SNP	DCAF4L2	ENST00000319675	human	ensembl	74_37	-1	known	silent	c.861	p.S287	0.975	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF4L2	HGNC	ENSG00000176566				103	0	0	73	10	12.0482
KIAA1429	0	genome.wustl.edu	37	8	95500956	95500956	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	8	95500956	95500956	T	C	SNP	KIAA1429	ENST00000297591	human	ensembl	74_37	-1	known	missense	c.5417	p.H1806R	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	KIAA1429	HGNC	ENSG00000164944				182	0	0	212	26	10.9244
ANKS6	0	genome.wustl.edu	37	9	101552786	101552786	+	Silent	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	9	101552786	101552786	G	A	SNP	ANKS6	ENST00000375018	human	ensembl	74_37	-1	known	silent	c.462	p.G154	0.675	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_SAM_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SAM,prints_Ankyrin_rpt	-	no_errors	ANKS6	HGNC	ENSG00000165138				31	0	0	23	8	25.8065
ZNF462	0	genome.wustl.edu	37	9	109687613	109687613	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	9	109687613	109687613	G	A	SNP	ZNF462	ENST00000457913	human	ensembl	74_37	+1	known	missense	c.1420	p.E474K	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF462	HGNC	ENSG00000148143				109	0	0	81	30	27.027
ZNF462	0	genome.wustl.edu	37	9	109687834	109687834	+	Silent	SNP	A	A	G			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	9	109687834	109687834	A	G	SNP	ZNF462	ENST00000457913	human	ensembl	74_37	+1	known	silent	c.1641	p.P547	0.196	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF462	HGNC	ENSG00000148143				38	0	0	35	10	22.2222
MUSK	0	genome.wustl.edu	37	9	113550073	113550073	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	9	113550073	113550073	G	A	SNP	MUSK	ENST00000374448	human	ensembl	74_37	+1	known	missense	c.1882	p.A628T	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Prot_kinase_dom,pfam_Frizzled_dom,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Kinase-like_dom,superfamily_Frizzled_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Frizzled_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MUSK	HGNC	ENSG00000030304				45	0	0	26	7	21.2121
DAB2IP	0	genome.wustl.edu	37	9	124530798	124530798	+	Silent	SNP	C	C	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	9	124530798	124530798	C	A	SNP	DAB2IP	ENST00000408936	human	ensembl	74_37	+1	known	silent	c.1785	p.I595	1.000	superfamily_Rho_GTPase_activation_prot,smart_RasGAP	pfam_DUF3498,pfam_RasGAP,pfam_C2_dom,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_Pleckstrin_homology,smart_C2_dom,smart_RasGAP,pfscan_Pleckstrin_homology,pfscan_RasGAP	-	no_errors	DAB2IP	HGNC	ENSG00000136848				154	0	0	136	22	13.9241
NEK6	0	genome.wustl.edu	37	9	127089652	127089652	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	9	127089652	127089652	G	A	SNP	NEK6	ENST00000373600	human	ensembl	74_37	+1	known	missense	c.652	p.G218S	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK6	HGNC	ENSG00000119408				307	0	0	229	36	13.5849
GOLGA1	0	genome.wustl.edu	37	9	127644063	127644063	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	9	127644063	127644063	C	A	SNP	GOLGA1	ENST00000373555	human	ensembl	74_37	-1	known	missense	c.2136	p.E712D	1.000	pfam_GRIP,superfamily_GRIP,smart_GRIP,pfscan_GRIP	pfam_GRIP,superfamily_Prefoldin,superfamily_GRIP,smart_GRIP,pfscan_GRIP	-	no_errors	GOLGA1	HGNC	ENSG00000136935				156	0	0	121	15	11.0294
FPGS	0	genome.wustl.edu	37	9	130572387	130572387	+	Splice_Site	SNP	T	T	C			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	9	130572387	130572387	T	C	SNP	FPGS	ENST00000373247	human	ensembl	74_37	+1	known	splice_site	c.1287+2	e13+2	1.000	-	-	-	no_errors	FPGS	HGNC	ENSG00000136877				48	0	0	25	7	21.875
SWI5	0	genome.wustl.edu	37	9	131038469	131038469	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	9	131038469	131038469	C	A	SNP	SWI5	ENST00000320188	human	ensembl	74_37	+1	known	missense	c.45	p.S15R	0.089	NULL	pfam_DNA-repair_Swi5	-	no_errors	SWI5	HGNC	ENSG00000175854				141	0	0	84	19	18.4466
MPDZ	0	genome.wustl.edu	37	9	13143471	13143471	+	Silent	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	9	13143471	13143471	G	A	SNP	MPDZ	ENST00000319217	human	ensembl	74_37	-1	known	silent	c.3834	p.A1278	1.000	NULL	pfam_PDZ,pfam_L27_2,superfamily_PDZ,smart_PDZ,pfscan_L27,pfscan_PDZ	-	no_errors	MPDZ	HGNC	ENSG00000107186				145	0	0	123	17	12.1429
TOR1A	0	genome.wustl.edu	37	9	132585059	132585059	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	9	132585059	132585059	G	A	SNP	TOR1A	ENST00000351698	human	ensembl	74_37	-1	known	missense	c.245	p.A82V	0.995	pfam_Torsin,superfamily_P-loop_NTPase,pirsf_Torsin_subgr	pfam_Torsin,superfamily_P-loop_NTPase,pirsf_Torsin_subgr	-	no_errors	TOR1A	HGNC	ENSG00000136827				168	0	0	143	20	12.2699
RAPGEF1	0	genome.wustl.edu	37	9	134459791	134459791	+	Silent	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	9	134459791	134459791	C	T	SNP	RAPGEF1	ENST00000372190	human	ensembl	74_37	-1	known	silent	c.2817	p.R939	0.993	pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RAPGEF1	HGNC	ENSG00000107263				36	0	0	40	6	13.0435
RALGDS	0	genome.wustl.edu	37	9	135977061	135977061	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	9	135977061	135977061	G	A	SNP	RALGDS	ENST00000542690	human	ensembl	74_37	-1	known	missense	c.2513	p.T838M	0.988	NULL	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_Ras-assoc,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RALGDS	HGNC	ENSG00000160271				63	0	0	46	9	16.3636
KCNT1	0	genome.wustl.edu	37	9	138650317	138650317	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	9	138650317	138650317	A	G	SNP	KCNT1	ENST00000298480	human	ensembl	74_37	+1	known	missense	c.817	p.I273V	1.000	NULL	pfam_K_chnl_Ca-activ_BK_asu,pfam_2pore_dom_K_chnl_dom	-	no_errors	KCNT1	HGNC	ENSG00000107147				99	0	0	70	10	12.5
FREM1	0	genome.wustl.edu	37	9	14805124	14805124	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	9	14805124	14805124	C	T	SNP	FREM1	ENST00000380881	human	ensembl	74_37	-1	known	missense	c.3304	p.A1102T	0.998	NULL	pfam_C-type_lectin,pfam_Calx_beta,superfamily_C-type_lectin_fold,superfamily_Cadherin-like,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	FREM1	HGNC	ENSG00000164946				175	0	0	146	32	17.9775
ADAMTSL1	0	genome.wustl.edu	37	9	18574213	18574213	+	Silent	SNP	T	T	C			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	9	18574213	18574213	T	C	SNP	ADAMTSL1	ENST00000327883	human	ensembl	74_37	+1	known	silent	c.423	p.G141	0.794	NULL	pfam_Thrombospondin_1_rpt,pfam_ADAM_spacer1,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_Thrombospondin_1_rpt	-	no_errors	ADAMTSL1	HGNC	ENSG00000178031				232	0	0	216	35	13.9442
FOCAD	0	genome.wustl.edu	37	9	20874757	20874757	+	Silent	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	9	20874757	20874757	C	T	SNP	FOCAD	ENST00000338382	human	ensembl	74_37	+1	known	silent	c.2268	p.G756	0.414	superfamily_ARM-type_fold	pfam_DUF3028,pfam_DUF3730,superfamily_ARM-type_fold	-	no_errors	FOCAD	HGNC	ENSG00000188352				220	0	0	148	32	17.7778
IFNA7	0	genome.wustl.edu	37	9	21202157	21202157	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	9	21202157	21202157	C	T	SNP	IFNA7	ENST00000239347	human	ensembl	74_37	-1	known	missense	c.8	p.R3Q	0.000	pfam_Interferon_alpha/beta/delta	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta	-	no_errors	IFNA7	HGNC	ENSG00000214042				85	0	0	88	10	10.2041
UNC13B	0	genome.wustl.edu	37	9	35382432	35382432	+	Silent	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	9	35382432	35382432	C	T	SNP	UNC13B	ENST00000378496	human	ensembl	74_37	+1	known	silent	c.2487	p.N829	1.000	NULL	pfam_Munc13_subgr_dom-2,pfam_Ca-dep_secretion_activator,pfam_C2_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_dom,smart_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13B	HGNC	ENSG00000198722				171	0	0	138	26	15.8537
AK3	0	genome.wustl.edu	37	9	4719182	4719182	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	9	4719182	4719182	C	T	SNP	AK3	ENST00000381809	human	ensembl	74_37	-1	known	missense	c.397	p.A133T	0.008	pfam_Adenylate_kin,pfam_Adenylate_kinase_lid-dom,superfamily_P-loop_NTPase,superfamily_Adenylate_kinase_lid-dom,tigrfam_Adenyl_kin_sub	pfam_Adenylate_kin,pfam_Adenylate_kinase_lid-dom,superfamily_P-loop_NTPase,superfamily_Adenylate_kinase_lid-dom,prints_Adenylate_kin,tigrfam_Adenyl_kin_sub	-	no_errors	AK3	HGNC	ENSG00000147853				113	0	0	120	12	9.09091
KDM4C	0	genome.wustl.edu	37	9	6888045	6888045	+	Silent	SNP	T	T	C			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	9	6888045	6888045	T	C	SNP	KDM4C	ENST00000381309	human	ensembl	74_37	+1	known	silent	c.765	p.Y255	0.970	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	pfam_JmjC_dom,pfam_TF_JmjN,superfamily_Znf_FYVE_PHD,superfamily_Chorismate_mutase_type_II,smart_TF_JmjN,smart_JmjC_dom,smart_Znf_PHD,smart_Tudor,pfscan_TF_JmjN,pfscan_JmjC_dom	-	no_errors	KDM4C	HGNC	ENSG00000107077				79	0	0	75	26	25.7426
FAM122A	0	genome.wustl.edu	37	9	71395740	71395740	+	Silent	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	9	71395740	71395740	C	T	SNP	FAM122A	ENST00000394264	human	ensembl	74_37	+1	known	silent	c.660	p.G220	1.000	NULL	NULL	-	no_errors	FAM122A	HGNC	ENSG00000187866				118	0	0	99	15	13.1579
CTSL3P	0	genome.wustl.edu	37	9	90387899	90387899	+	RNA	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	9	90387899	90387899	G	A	SNP	CTSL3P	ENST00000354530	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.996	-	-	-	no_errors	CTSL3P	HGNC	ENSG00000188029				108	0	0	75	10	11.7647
PTPDC1	0	genome.wustl.edu	37	9	96859844	96859844	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	9	96859844	96859844	G	T	SNP	PTPDC1	ENST00000375360	human	ensembl	74_37	+1	known	missense	c.834	p.E278D	1.000	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Dual-sp_phosphatase_subgr_cat,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase	-	no_errors	PTPDC1	HGNC	ENSG00000158079				126	0	0	125	8	6.01504
TRMT2B	0	genome.wustl.edu	37	X	100274338	100274338	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	X	100274338	100274338	A	G	SNP	TRMT2B	ENST00000372935	human	ensembl	74_37	-1	known	missense	c.1223	p.L408P	0.422	pfam_U5_MeTrfase	pfam_U5_MeTrfase,pfam_Small_mtfrase_dom	-	no_errors	TRMT2B	HGNC	ENSG00000188917				55	0	0	41	40	49.3827
TCEAL6	0	genome.wustl.edu	37	X	101396155	101396155	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	X	101396155	101396155	G	T	SNP	TCEAL6	ENST00000372773	human	ensembl	74_37	-1	known	missense	c.149	p.A50D	0.000	pfam_TF_A-like/BEX-like	pfam_TF_A-like/BEX-like	-	no_errors	TCEAL6	HGNC	ENSG00000204071				64	0	0	71	16	18.3908
PIGA	0	genome.wustl.edu	37	X	15349629	15349629	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	X	15349629	15349629	C	T	SNP	PIGA	ENST00000333590	human	ensembl	74_37	-1	known	missense	c.424	p.A142T	1.000	pfam_PIGA_GPI_anchor_biosynthesis	pfam_PIGA_GPI_anchor_biosynthesis,pfam_Glyco_trans_1	-	no_errors	PIGA	HGNC	ENSG00000165195				56	0	0	56	7	11.1111
PPP2R3B	0	genome.wustl.edu	37	X	295141	295141	+	Silent	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	X	295141	295141	G	A	SNP	PPP2R3B	ENST00000390665	human	ensembl	74_37	-1	known	silent	c.1689	p.Y563	0.951	NULL	pfscan_EF_hand_dom	-	no_errors	PPP2R3B	HGNC	ENSG00000167393				60	0	0	35	4	10.2564
MAGEB16	0	genome.wustl.edu	37	X	35821242	35821242	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	X	35821242	35821242	C	T	SNP	MAGEB16	ENST00000399992	human	ensembl	74_37	+1	known	missense	c.1025	p.A342V	0.028	pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEB16	HGNC	ENSG00000189023				14	0	0	14	3	17.6471
CASK	0	genome.wustl.edu	37	X	41379720	41379720	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	X	41379720	41379720	G	A	SNP	CASK	ENST00000378163	human	ensembl	74_37	-1	known	missense	c.2734	p.L912F	1.000	superfamily_P-loop_NTPase,smart_GK/Ca_channel_bsu	pfam_Prot_kinase_dom,pfam_GK/Ca_channel_bsu,pfam_L27_C,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,pfam_SH3_2,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_P-loop_NTPase,superfamily_SH3_domain,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_L27,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Prot_kinase_dom,pfscan_Guanylate_kin-like	-	no_errors	CASK	HGNC	ENSG00000147044				33	0	0	17	16	48.4848
SUV39H1	0	genome.wustl.edu	37	X	48564698	48564698	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	X	48564698	48564698	G	T	SNP	SUV39H1	ENST00000337852	human	ensembl	74_37	+1	known	missense	c.904	p.D302Y	1.000	pfam_SET_dom,smart_SET_dom,pirsf_Histone_H3-K9_MeTrfase,pfscan_SET_dom	pfam_SET_dom,pfam_Pre-SET_dom,pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,smart_Post-SET_dom,pirsf_Histone_H3-K9_MeTrfase,pfscan_SET_dom,pfscan_Pre-SET_dom,pfscan_Post-SET_dom,pfscan_Chromo_domain/shadow	-	no_errors	SUV39H1	HGNC	ENSG00000101945				57	0	0	40	27	40.2985
CXorf67	0	genome.wustl.edu	37	X	51150887	51150887	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	X	51150887	51150887	C	T	SNP	CXorf67	ENST00000342995	human	ensembl	74_37	+1	known	missense	c.1019	p.T340M	0.000	NULL	NULL	-	no_errors	CXorf67	HGNC	ENSG00000187690				33	0	0	13	5	27.7778
WNK3	0	genome.wustl.edu	37	X	54276024	54276024	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	X	54276024	54276024	C	A	SNP	WNK3	ENST00000354646	human	ensembl	74_37	-1	known	missense	c.2757	p.L919F	0.046	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	WNK3	HGNC	ENSG00000196632				104	0	0	114	11	8.8
UBQLN2	0	genome.wustl.edu	37	X	56591820	56591820	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	X	56591820	56591820	T	C	SNP	UBQLN2	ENST00000338222	human	ensembl	74_37	+1	known	missense	c.1514	p.V505A	0.988	NULL	pfam_Ubiquitin_dom,pfam_Rad60/SUMO_like,pfam_UBA/Ts_N,superfamily_UBA-like,superfamily_ARM-type_fold,superfamily_XPC-bd,smart_Ubiquitin_dom,smart_STI1_HS-bd,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Ubiquitin_supergroup	-	no_errors	UBQLN2	HGNC	ENSG00000188021				8	0	0	3	3	50
RGAG4	0	genome.wustl.edu	37	X	71351350	71351350	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	X	71351350	71351350	G	A	SNP	RGAG4	ENST00000479991	human	ensembl	74_37	-1	known	missense	c.41	p.A14V	0.990	NULL	pfam_Retrotrans_gag_dom	-	no_errors	RGAG4	HGNC	ENSG00000242732				26	0	0	24	4	14.2857
ERCC6L	0	genome.wustl.edu	37	X	71427426	71427426	+	Silent	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	X	71427426	71427426	C	T	SNP	ERCC6L	ENST00000334463	human	ensembl	74_37	-1	known	silent	c.1191	p.T397	0.967	superfamily_P-loop_NTPase	pfam_SNF2_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_TPR-contain_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ERCC6L	HGNC	ENSG00000186871				67	0	0	81	23	22.1154
CDX4	0	genome.wustl.edu	37	X	72674374	72674374	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	X	72674374	72674374	C	T	SNP	CDX4	ENST00000373514	human	ensembl	74_37	+1	known	missense	c.808	p.R270C	0.024	NULL	pfam_Caudal_activation_dom,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_HTH_motif,prints_Homeobox_metazoa	-	no_errors	CDX4	HGNC	ENSG00000131264				26	0	0	7	15	68.1818
SATL1	0	genome.wustl.edu	37	X	84363384	84363384	+	Silent	SNP	G	G	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	X	84363384	84363384	G	A	SNP	SATL1	ENST00000509231	human	ensembl	74_37	-1	known	silent	c.591	p.G197	0.000	NULL	superfamily_Acyl_CoA_acyltransferase	-	no_errors	SATL1	HGNC	ENSG00000184788				115	0	0	65	18	21.6867
BCL9	0	genome.wustl.edu	37	1	147091500	147091501	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	1	147091500	147091501	-	C	INS	BCL9	ENST00000234739	human	ensembl	74_37	+1	known	frame_shift_ins	c.1539_1540	p.P516fs	1.000:1.000	NULL	pfam_BCL9_beta-catenin-bd_dom	-	no_errors	BCL9	HGNC	ENSG00000116128				193	0	0	176	22	11.1111
ABL2	0	genome.wustl.edu	37	1	179077893	179077894	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	1	179077893	179077894	-	T	INS	ABL2	ENST00000502732	human	ensembl	74_37	-1	known	frame_shift_ins	c.2509_2508	p.S836fs	1.000:1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_F-actin_binding,pfam_Prot_kinase_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,pfam_SH3-like_bac-type,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_F-actin_binding,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	ABL2	HGNC	ENSG00000143322				123	0	0	148	16	9.7561
GGPS1	0	genome.wustl.edu	37	1	235505913	235505913	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	1	235505913	235505913	A	-	DEL	GGPS1	ENST00000282841	human	ensembl	74_37	+1	known	frame_shift_del	c.729	p.K245fs	1.000	pfam_Polyprenyl_synt,superfamily_Terpenoid_synth	pfam_Polyprenyl_synt,superfamily_Terpenoid_synth	-	no_errors	GGPS1	HGNC	ENSG00000152904				68	0	0	58	13	18.3099
SMAP2	0	genome.wustl.edu	37	1	40878734	40878734	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	1	40878734	40878734	A	-	DEL	SMAP2	ENST00000372718	human	ensembl	74_37	+1	known	frame_shift_del	c.449	p.K152fs	1.000	NULL	pfam_ArfGAP,smart_ArfGAP,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	SMAP2	HGNC	ENSG00000084070				84	0	0	77	13	14.4444
CCDC18	0	genome.wustl.edu	37	1	93667516	93667516	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	1	93667516	93667516	A	-	DEL	CCDC18	ENST00000557479	human	ensembl	74_37	+1	known	frame_shift_del	c.1120	p.V377fs	1.000	NULL	superfamily_Prefoldin,superfamily_tRNA-bd_arm	-	no_errors	CCDC18	HGNC	ENSG00000122483				90	0	0	56	14	20
LZTS2	0	genome.wustl.edu	37	10	102762312	102762313	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	10	102762312	102762313	CT	-	DEL	LZTS2	ENST00000370220	human	ensembl	74_37	+1	known	frame_shift_del	c.17_18	p.L7fs	1.000:0.975	NULL	NULL	-	no_errors	LZTS2	HGNC	ENSG00000107816				110	0	0	71	11	13.4146
DCLRE1A	0	genome.wustl.edu	37	10	115609826	115609826	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	10	115609826	115609826	T	-	DEL	DCLRE1A	ENST00000361384	human	ensembl	74_37	-1	known	frame_shift_del	c.1038	p.K346fs	0.000	NULL	pfam_DRMBL	-	no_errors	DCLRE1A	HGNC	ENSG00000198924				131	0	0	132	20	13.1579
TRUB1	0	genome.wustl.edu	37	10	116730192	116730192	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	10	116730192	116730192	C	-	DEL	TRUB1	ENST00000298746	human	ensembl	74_37	+1	known	frame_shift_del	c.589	p.L199fs	1.000	pfam_PsdUridine_synth,superfamily_PsdUridine_synth_cat_dom,tigrfam_tRNA_psdUridine_synth_TruB	pfam_PsdUridine_synth,superfamily_PsdUridine_synth_cat_dom,tigrfam_tRNA_psdUridine_synth_TruB	-	no_errors	TRUB1	HGNC	ENSG00000165832				249	0	0	267	33	11
C10orf90	0	genome.wustl.edu	37	10	128193320	128193320	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	10	128193320	128193320	G	-	DEL	C10orf90	ENST00000544758	human	ensembl	74_37	-1	known	frame_shift_del	c.740	p.P247fs	0.057	NULL	NULL	-	no_errors	C10orf90	HGNC	ENSG00000154493				81	0	0	82	15	15.4639
CXCL12	0	genome.wustl.edu	37	10	44871450	44871450	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	10	44871450	44871450	T	-	DEL	CXCL12	ENST00000374426	human	ensembl	74_37	-1	known	frame_shift_del	c.297	p.E100fs	1.000	NULL	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom	-	no_errors	CXCL12	HGNC	ENSG00000107562				179	0	0	161	30	15.7068
ANK3	0	genome.wustl.edu	37	10	61823946	61823946	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	10	61823946	61823946	T	-	DEL	ANK3	ENST00000280772	human	ensembl	74_37	-1	known	frame_shift_del	c.12420	p.K4140fs	1.000	pfam_Death_domain,superfamily_DEATH-like_dom,smart_Death_domain,pfscan_Death_domain	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,smart_Ankyrin_rpt,smart_ZU5,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK3	HGNC	ENSG00000151150				124	0	0	127	18	12.4138
TRIM29	0	genome.wustl.edu	37	11	120008403	120008403	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	11	120008403	120008403	C	-	DEL	TRIM29	ENST00000341846	human	ensembl	74_37	-1	known	frame_shift_del	c.337	p.A113fs	0.008	NULL	pfam_Znf_B-box,smart_Znf_B-box,pfscan_Znf_B-box	-	no_errors	TRIM29	HGNC	ENSG00000137699				460	0	0	376	46	10.9005
VSIG2	0	genome.wustl.edu	37	11	124620739	124620740	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	11	124620739	124620740	-	G	INS	VSIG2	ENST00000326621	human	ensembl	74_37	-1	known	frame_shift_ins	c.298_297	p.T99fs	0.998:1.000	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	VSIG2	HGNC	ENSG00000019102				74	0	0	82	9	9.89011
SPON1	0	genome.wustl.edu	37	11	14276276	14276277	+	Splice_Site	DEL	GT	GT	-			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	GT	GT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	11	14276276	14276277	GT	-	DEL	SPON1	ENST00000310358	human	ensembl	74_37	+1	known	splice_site_del	c.NULL	NULL	1.000:1.000	-	-	-	no_errors	SPON1	HGNC	ENSG00000152268				89	0	0	79	6	7.05882
MUC15	0	genome.wustl.edu	37	11	26587427	26587427	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	11	26587427	26587427	T	-	DEL	MUC15	ENST00000436318	human	ensembl	74_37	-1	known	frame_shift_del	c.60	p.K20fs	0.000	NULL	NULL	-	no_errors	MUC15	HGNC	ENSG00000169550				43	0	0	56	7	11.1111
KCNA4	0	genome.wustl.edu	37	11	30033563	30033563	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	11	30033563	30033563	A	-	DEL	KCNA4	ENST00000328224	human	ensembl	74_37	-1	known	frame_shift_del	c.663	p.F221fs	0.902	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	pfam_K_chnl_volt-dep_Kv1.4_TID,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.4,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA4	HGNC	ENSG00000182255				126	0	0	109	14	11.3821
ART1	0	genome.wustl.edu	37	11	3681478	3681478	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	11	3681478	3681478	C	-	DEL	ART1	ENST00000250693	human	ensembl	74_37	+1	known	frame_shift_del	c.729	p.F246fs	0.999	pfam_ART,prints_ART	pfam_ART,prints_ART	-	no_errors	ART1	HGNC	ENSG00000129744				101	0	0	96	8	7.69231
PKP3	0	genome.wustl.edu	37	11	399184	399184	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	11	399184	399184	A	-	DEL	PKP3	ENST00000331563	human	ensembl	74_37	+1	known	frame_shift_del	c.1261	p.N422fs	1.000	superfamily_ARM-type_fold,smart_Armadillo	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	PKP3	HGNC	ENSG00000184363				22	0	0	9	5	35.7143
ARHGAP1	0	genome.wustl.edu	37	11	46702224	46702224	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	11	46702224	46702224	G	-	DEL	ARHGAP1	ENST00000311956	human	ensembl	74_37	-1	known	frame_shift_del	c.709	p.L237fs	0.993	superfamily_Rho_GTPase_activation_prot	pfam_RhoGAP_dom,pfam_CRAL-TRIO_dom,superfamily_Rho_GTPase_activation_prot,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,smart_RhoGAP_dom,pfscan_CRAL-TRIO_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP1	HGNC	ENSG00000175220				90	0	0	73	15	17.0455
PTPRJ	0	genome.wustl.edu	37	11	48157816	48157816	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	11	48157816	48157816	G	-	DEL	PTPRJ	ENST00000418331	human	ensembl	74_37	+1	known	frame_shift_del	c.1841	p.D616fs	0.000	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRJ	HGNC	ENSG00000149177				161	0	0	127	20	13.6054
TRIM51	0	genome.wustl.edu	37	11	55653610	55653610	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	11	55653610	55653610	A	-	DEL	TRIM51	ENST00000449290	human	ensembl	74_37	+1	known	frame_shift_del	c.423	p.M144fs	0.001	NULL	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM51	HGNC	ENSG00000124900				53	0	0	53	7	11.6667
NUMA1	0	genome.wustl.edu	37	11	71724190	71724190	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	11	71724190	71724190	C	-	DEL	NUMA1	ENST00000393695	human	ensembl	74_37	-1	known	frame_shift_del	c.4359	p.L1454fs	1.000	NULL	superfamily_Prefoldin	-	no_errors	NUMA1	HGNC	ENSG00000137497				180	0	0	176	22	11.1111
UHRF1BP1L	0	genome.wustl.edu	37	12	100451350	100451350	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	12	100451350	100451350	T	-	DEL	UHRF1BP1L	ENST00000279907	human	ensembl	74_37	-1	known	frame_shift_del	c.3423	p.G1142fs	1.000	NULL	NULL	-	no_errors	UHRF1BP1L	HGNC	ENSG00000111647				75	0	0	75	11	12.7907
UTP20	0	genome.wustl.edu	37	12	101682762	101682763	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	12	101682762	101682763	-	A	INS	UTP20	ENST00000261637	human	ensembl	74_37	+1	known	frame_shift_ins	c.540_541	p.L182fs	1.000:1.000	superfamily_ARM-type_fold	pfam_DRIM,superfamily_ARM-type_fold	-	no_errors	UTP20	HGNC	ENSG00000120800				57	0	0	53	9	14.5161
CCDC63	0	genome.wustl.edu	37	12	111311659	111311659	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	12	111311659	111311659	A	-	DEL	CCDC63	ENST00000308208	human	ensembl	74_37	+1	known	frame_shift_del	c.383	p.I131fs	0.872	NULL	NULL	-	no_errors	CCDC63	HGNC	ENSG00000173093				109	0	0	103	20	16.2602
HECTD4	0	genome.wustl.edu	37	12	112690348	112690349	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	12	112690348	112690349	-	G	INS	HECTD4	ENST00000377560	human	ensembl	74_37	-1	known	frame_shift_ins	c.2916_2915	p.S973fs	0.999:1.000	NULL	pfam_HECT,superfamily_HECT,superfamily_ConA-like_lec_gl_sf,smart_HECT,pfscan_HECT	-	no_errors	HECTD4	HGNC	ENSG00000173064				113	0	0	126	11	8.0292
SLC38A1	0	genome.wustl.edu	37	12	46594965	46594965	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	12	46594965	46594965	T	-	DEL	SLC38A1	ENST00000398637	human	ensembl	74_37	-1	known	frame_shift_del	c.919	p.M307fs	1.000	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC38A1	HGNC	ENSG00000111371				35	0	0	39	6	13.3333
KMT2D	0	genome.wustl.edu	37	12	49447032	49447032	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	12	49447032	49447032	T	-	DEL	KMT2D	ENST00000301067	human	ensembl	74_37	-1	known	frame_shift_del	c.912	p.K304fs	0.842	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Znf_RING,pfscan_Znf_PHD-finger	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2D	HGNC	ENSG00000167548				251	0	0	191	32	14.3498
KRT79	0	genome.wustl.edu	37	12	53225246	53225246	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	12	53225246	53225246	C	-	DEL	KRT79	ENST00000330553	human	ensembl	74_37	-1	known	frame_shift_del	c.642	p.R215fs	0.064	pfam_IF	pfam_IF,superfamily_STAT_TF_coiled-coil,prints_Keratin_II	-	no_errors	KRT79	HGNC	ENSG00000185640				224	0	0	191	22	10.3286
XPOT	0	genome.wustl.edu	37	12	64812755	64812755	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	12	64812755	64812755	T	-	DEL	XPOT	ENST00000332707	human	ensembl	74_37	+1	known	frame_shift_del	c.370	p.F126fs	1.000	pfam_Exportin-1/Importin-b-like,superfamily_ARM-type_fold	pfam_Exportin-1/Importin-b-like,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N	-	no_errors	XPOT	HGNC	ENSG00000184575				172	1	0.578035	154	25	13.9665
TMBIM4	0	genome.wustl.edu	37	12	66547156	66547156	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	12	66547156	66547156	A	-	DEL	TMBIM4	ENST00000358230	human	ensembl	74_37	-1	known	frame_shift_del	c.170	p.L57fs	0.995	pfam_Bax_inhibitor_1-related	pfam_Bax_inhibitor_1-related	-	no_errors	TMBIM4	HGNC	ENSG00000155957				122	1	0.813008	137	11	7.43243
LGR5	0	genome.wustl.edu	37	12	71977713	71977713	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	12	71977713	71977713	T	-	DEL	LGR5	ENST00000266674	human	ensembl	74_37	+1	known	frame_shift_del	c.1923	p.L643fs	0.000	pfam_GPCR_Rhodpsn,prints_Gphrmn_rcpt_fam,pfscan_GPCR_Rhodpsn_7TM	pfam_Leu-rich_rpt,pfam_GPCR_Rhodpsn,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,prints_Gphrmn_rcpt_fam,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	LGR5	HGNC	ENSG00000139292				133	0	0	84	16	16
CARS2	0	genome.wustl.edu	37	13	111315833	111315833	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	13	111315833	111315833	T	-	DEL	CARS2	ENST00000257347	human	ensembl	74_37	-1	known	frame_shift_del	c.952	p.M318fs	1.000	pfam_Cys-tRNA/MSH_ligase,pfam_Methionyl/Leucyl_tRNA_Synth,pfam_aa-tRNA-synth_Ia,tigrfam_Cys-tRNA-ligase	pfam_Cys-tRNA/MSH_ligase,pfam_Methionyl/Leucyl_tRNA_Synth,pfam_aa-tRNA-synth_Ia,superfamily_tRNAsynth_1a_anticodon-bd,prints_Cys-tRNA/MSH_ligase,tigrfam_Cys-tRNA-ligase	-	no_errors	CARS2	HGNC	ENSG00000134905				44	0	0	59	8	11.9403
UPF3A	0	genome.wustl.edu	37	13	115067419	115067419	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	13	115067419	115067419	G	-	DEL	UPF3A	ENST00000375299	human	ensembl	74_37	+1	known	frame_shift_del	c.1221	p.E409fs	0.000	NULL	pfam_Nonsense_mediated_decay_UPF3	-	no_errors	UPF3A	HGNC	ENSG00000169062				60	0	0	44	7	13.7255
SACS	0	genome.wustl.edu	37	13	23912652	23912654	+	In_Frame_Del	DEL	TCA	TCA	-			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	TCA	TCA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	13	23912652	23912654	TCA	-	DEL	SACS	ENST00000382292	human	ensembl	74_37	-1	known	in_frame_del	c.5363_5361	p.D1788in_frame_del	1.000:1.000:1.000	NULL	pfam_HEPN,pfam_Ubiquitin_dom,superfamily_HATPase_ATP-bd,superfamily_DnaJ_domain,smart_HEPN,pfscan_HEPN,pfscan_DnaJ_domain,pfscan_Ubiquitin_supergroup	-	no_errors	SACS	HGNC	ENSG00000151835				214	0	0	173	10	5.46448
ZC3H13	0	genome.wustl.edu	37	13	46585554	46585554	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	13	46585554	46585554	T	-	DEL	ZC3H13	ENST00000242848	human	ensembl	74_37	-1	known	frame_shift_del	c.584	p.K195fs	1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H13	HGNC	ENSG00000123200				128	0	0	88	12	12
USP8	0	genome.wustl.edu	37	15	50773879	50773880	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	15	50773879	50773880	-	A	INS	USP8	ENST00000307179	human	ensembl	74_37	+1	known	frame_shift_ins	c.1420_1421	p.N476fs	1.000:1.000	NULL	pfam_Peptidase_C19/C67,pfam_USP8_dimer,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,superfamily_WW_dom,pfscan_Rhodanese-like_dom,pfscan_Peptidase_C19/C67	-	no_errors	USP8	HGNC	ENSG00000138592				54	0	0	72	11	13.253
CTSH	0	genome.wustl.edu	37	15	79215392	79215392	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	15	79215392	79215392	T	-	DEL	CTSH	ENST00000220166	human	ensembl	74_37	-1	known	frame_shift_del	c.875	p.N292fs	0.197	pfam_Peptidase_C1A_C,smart_Peptidase_C1A_C	pfam_Peptidase_C1A_C,pfam_Prot_inhib_I29,smart_Prot_inhib_I29,smart_Peptidase_C1A_C,prints_Peptidase_C1A_C	-	no_errors	CTSH	HGNC	ENSG00000103811				76	0	0	63	7	10
SCAND2P	0	genome.wustl.edu	37	15	85177820	85177820	+	RNA	DEL	A	A	-			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	15	85177820	85177820	A	-	DEL	SCAND2P	ENST00000427525	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SCAND2P	HGNC	ENSG00000176700				80	0	0	80	15	15.7895
ABCC1	0	genome.wustl.edu	37	16	16142119	16142120	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	16	16142119	16142120	-	C	INS	ABCC1	ENST00000399408	human	ensembl	74_37	+1	known	frame_shift_ins	c.1339_1340	p.L449fs	1.000:1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom,tigrfam_Multidrug-R_assoc	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC1_TM_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,tigrfam_Multidrug-R_assoc	-	no_errors	ABCC1	HGNC	ENSG00000103222				202	0	0	142	23	13.9394
MAZ	0	genome.wustl.edu	37	16	29821439	29821444	+	In_Frame_Del	DEL	GCGGCA	GCGGCA	-			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	GCGGCA	GCGGCA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	16	29821439	29821444	GCGGCA	-	DEL	MAZ	ENST00000322945	human	ensembl	74_37	+1	known	in_frame_del	c.1321_1326	p.AA444in_frame_del	0.366:0.356:0.234:0.236:0.231:0.032	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	MAZ	HGNC	ENSG00000103495				55	0	0	55	6	9.83607
PLA2G15	0	genome.wustl.edu	37	16	68289855	68289855	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	16	68289855	68289855	G	-	DEL	PLA2G15	ENST00000219345	human	ensembl	74_37	+1	known	frame_shift_del	c.689	p.G232fs	1.000	pfam_LACT/PDAT_acylTrfase	pfam_LACT/PDAT_acylTrfase	-	no_errors	PLA2G15	HGNC	ENSG00000103066				59	0	0	50	9	15.2542
MYOCD	0	genome.wustl.edu	37	17	12656495	12656495	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	17	12656495	12656495	C	-	DEL	MYOCD	ENST00000425538	human	ensembl	74_37	+1	known	frame_shift_del	c.1890	p.Q632fs	1.000	NULL	pfam_RPEL_repeat,pfam_SAP_dom,smart_RPEL_repeat,smart_SAP_dom,pfscan_RPEL_repeat,pfscan_SAP_dom	-	no_errors	MYOCD	HGNC	ENSG00000141052				278	0	0	256	19	6.90909
NF1	0	genome.wustl.edu	37	17	29553477	29553478	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	17	29553477	29553478	-	C	INS	NF1	ENST00000358273	human	ensembl	74_37	+1	known	frame_shift_ins	c.2026_2027	p.I679fs	0.997:0.998	superfamily_ARM-type_fold	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,superfamily_ARM-type_fold,superfamily_CRAL-TRIO_dom,smart_RasGAP,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_RasGAP	-	no_errors	NF1	HGNC	ENSG00000196712				86	0	0	84	5	5.61798
SEC14L1	0	genome.wustl.edu	37	17	75189591	75189591	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	17	75189591	75189591	A	-	DEL	SEC14L1	ENST00000392476	human	ensembl	74_37	+1	known	frame_shift_del	c.434	p.I147fs	1.000	pfam_PRELI/MSF1,pfscan_PRELI/MSF1	pfam_PRELI/MSF1,pfam_CRAL-TRIO_dom,pfam_CRAL/TRIO_N_dom,superfamily_CRAL-TRIO_dom,superfamily_CRAL/TRIO_N_dom,superfamily_GOLD,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_GOLD,pfscan_PRELI/MSF1	-	no_errors	SEC14L1	HGNC	ENSG00000129657				85	0	0	76	15	16.4835
EFNB3	0	genome.wustl.edu	37	17	7612525	7612525	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	17	7612525	7612525	C	-	DEL	EFNB3	ENST00000226091	human	ensembl	74_37	+1	known	frame_shift_del	c.654	p.L220fs	1.000	NULL	pfam_Ephrin,superfamily_Cupredoxin,prints_Ephrin	-	no_errors	EFNB3	HGNC	ENSG00000108947				134	0	0	102	11	9.73451
ZNF20	0	genome.wustl.edu	37	19	12243915	12243916	+	Frame_Shift_Ins	INS	-	-	GT			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	19	12243915	12243916	-	GT	INS	ZNF20	ENST00000334213	human	ensembl	74_37	-1	known	frame_shift_ins	c.1086_1085	p.E363fs	0.997:1.000	pfscan_Znf_C2H2	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF20	HGNC	ENSG00000132010				75	0	0	74	12	13.9535
ZNF626	0	genome.wustl.edu	37	19	20808338	20808338	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	19	20808338	20808338	T	-	DEL	ZNF626	ENST00000601440	human	ensembl	74_37	-1	known	frame_shift_del	c.345	p.G116fs	0.003	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF626	HGNC	ENSG00000188171				172	1	0.578035	128	27	17.4194
LMTK3	0	genome.wustl.edu	37	19	49000732	49000732	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	19	49000732	49000732	G	-	DEL	LMTK3	ENST00000270238	human	ensembl	74_37	-1	known	frame_shift_del	c.3681	p.K1228fs	0.998	smart_Ser/Thr_dual-sp_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	LMTK3	HGNC	ENSG00000142235				87	0	0	66	7	9.58904
ZIM3	0	genome.wustl.edu	37	19	57646554	57646555	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	19	57646554	57646555	-	T	INS	ZIM3	ENST00000269834	human	ensembl	74_37	-1	known	frame_shift_ins	c.1151_1150	p.I384fs	0.814:0.890	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZIM3	HGNC	ENSG00000141946				201	0	0	201	24	10.6667
DENND1C	0	genome.wustl.edu	37	19	6467915	6467916	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	19	6467915	6467916	-	C	INS	DENND1C	ENST00000381480	human	ensembl	74_37	-1	known	frame_shift_ins	c.2006_2005	p.D669fs	0.001:0.002	NULL	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND1C	HGNC	ENSG00000205744				43	0	0	33	7	17.5
CERS6	0	genome.wustl.edu	37	2	169487547	169487547	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	2	169487547	169487547	A	-	DEL	CERS6	ENST00000392687	human	ensembl	74_37	+1	known	frame_shift_del	c.460	p.K155fs	1.000	pfam_TLC-dom,smart_TLC-dom,pirsf_Longevity_assurance_LAG1_LAC1,pfscan_TLC-dom	pfam_TLC-dom,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_TLC-dom,pirsf_Longevity_assurance_LAG1_LAC1,pfscan_TLC-dom,pfscan_Homeobox_dom	-	no_errors	CERS6	HGNC	ENSG00000172292				175	0	0	179	14	7.25389
BZW1	0	genome.wustl.edu	37	2	201683505	201683505	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	2	201683505	201683505	A	-	DEL	BZW1	ENST00000409600	human	ensembl	74_37	+1	known	frame_shift_del	c.847	p.N285fs	1.000	superfamily_ARM-type_fold	pfam_W2_domain,superfamily_ARM-type_fold,smart_W2_domain	-	no_errors	BZW1	HGNC	ENSG00000082153				89	0	0	91	8	8.08081
MAP2	0	genome.wustl.edu	37	2	210561666	210561667	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	2	210561666	210561667	-	A	INS	MAP2	ENST00000360351	human	ensembl	74_37	+1	known	frame_shift_ins	c.4413_4414	p.T1473fs	1.000:1.000	pfam_MAP2_projctn	pfam_MAP2_projctn,pfam_MAP_tubulin-bd_rpt	-	no_errors	MAP2	HGNC	ENSG00000078018				79	0	0	51	7	12.069
DIS3L2	0	genome.wustl.edu	37	2	233194613	233194613	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	2	233194613	233194613	C	-	DEL	DIS3L2	ENST00000325385	human	ensembl	74_37	+1	known	frame_shift_del	c.1830	p.P612fs	1.000	NULL	NULL	-	no_errors	DIS3L2	HGNC	ENSG00000144535				79	0	0	57	10	14.9254
BCL11A	0	genome.wustl.edu	37	2	60689253	60689254	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	2	60689253	60689254	-	G	INS	BCL11A	ENST00000335712	human	ensembl	74_37	-1	known	frame_shift_ins	c.794_793	p.L265fs	1.000:1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	BCL11A	HGNC	ENSG00000119866				88	0	0	94	12	11.3208
AFTPH	0	genome.wustl.edu	37	2	64778860	64778861	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	2	64778860	64778861	-	A	INS	AFTPH	ENST00000422803	human	ensembl	74_37	+1	known	frame_shift_ins	c.252_253	p.N85fs	1.000:1.000	NULL	NULL	-	no_errors	AFTPH	HGNC	ENSG00000119844				81	0	0	78	12	13.3333
PTPRT	0	genome.wustl.edu	37	20	40739003	40739003	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	20	40739003	40739003	G	-	DEL	PTPRT	ENST00000373198	human	ensembl	74_37	-1	known	frame_shift_del	c.3281	p.P1094fs	0.991	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRT	HGNC	ENSG00000196090				83	0	0	58	8	12.1212
TP53RK	0	genome.wustl.edu	37	20	45315634	45315634	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	20	45315634	45315634	G	-	DEL	TP53RK	ENST00000372114	human	ensembl	74_37	-1	known	frame_shift_del	c.520	p.L174fs	0.000	pfam_LipoPS_kinase,pfam_Prot_kinase_dom,pfam_RIO-like_kinase,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom,tigrfam_Bud32	pfam_LipoPS_kinase,pfam_Prot_kinase_dom,pfam_RIO-like_kinase,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom,tigrfam_Bud32	-	no_errors	TP53RK	HGNC	ENSG00000172315				205	1	0.485437	160	26	13.9785
PMEPA1	0	genome.wustl.edu	37	20	56227348	56227349	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	20	56227348	56227349	-	G	INS	PMEPA1	ENST00000341744	human	ensembl	74_37	-1	known	frame_shift_ins	c.625_624	p.S208fs	1.000:0.979	NULL	NULL	-	no_errors	PMEPA1	HGNC	ENSG00000124225				102	0	0	73	13	15.1163
SCAF4	0	genome.wustl.edu	37	21	33074655	33074655	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	21	33074655	33074655	T	-	DEL	SCAF4	ENST00000286835	human	ensembl	74_37	-1	known	frame_shift_del	c.359	p.N120fs	1.000	pfam_RNA_pol_II-bd,superfamily_ENTH_VHS,smart_CID_dom	pfam_RNA_pol_II-bd,pfam_RRM_dom,superfamily_ENTH_VHS,smart_CID_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	SCAF4	HGNC	ENSG00000156304				88	0	0	83	9	9.78261
MED15	0	genome.wustl.edu	37	22	20918916	20918918	+	In_Frame_Del	DEL	CAG	CAG	-			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	CAG	CAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	22	20918916	20918918	CAG	-	DEL	MED15	ENST00000263205	human	ensembl	74_37	+1	known	in_frame_del	c.631_633	p.Q214in_frame_del	0.552:0.544:0.569	pfam_Mediator_Med15_met	pfam_Mediator_Med15_met	-	no_errors	MED15	HGNC	ENSG00000099917				43	0	0	28	7	20
RABL2B	0	genome.wustl.edu	37	22	51207224	51207226	+	In_Frame_Del	DEL	CCT	CCT	-			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	CCT	CCT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	22	51207224	51207226	CCT	-	DEL	RABL2B	ENST00000354869	human	ensembl	74_37	-1	known	in_frame_del	c.670_668	p.E223in_frame_del	0.000:0.002:0.002	smart_Ran_GTPase	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RABL2B	HGNC	ENSG00000079974				149	0	0	127	11	7.97101
ATR	0	genome.wustl.edu	37	3	142268410	142268411	+	Frame_Shift_Del	DEL	TC	TC	-			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	TC	TC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	3	142268410	142268411	TC	-	DEL	ATR	ENST00000350721	human	ensembl	74_37	-1	known	frame_shift_del	c.3082_3081	p.E1027fs	1.000:1.000	superfamily_ARM-type_fold	pfam_PI3/4_kinase_cat_dom,pfam_PIK-rel_kinase_FAT,pfam_UME,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_UME,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_HEAT_type_2,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATR	HGNC	ENSG00000175054				40	0	0	49	8	14.0351
PBX2P1	0	genome.wustl.edu	37	3	142895155	142895155	+	RNA	DEL	C	C	-			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	3	142895155	142895155	C	-	DEL	PBX2P1	ENST00000560287	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.064	-	-	-	no_errors	PBX2P1	HGNC	ENSG00000244171				10	0	0	5	5	50
NR2C2	0	genome.wustl.edu	37	3	15084406	15084406	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	3	15084406	15084406	T	-	DEL	NR2C2	ENST00000323373	human	ensembl	74_37	+1	known	frame_shift_del	c.1739	p.F582fs	1.000	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt	-	no_errors	NR2C2	HGNC	ENSG00000177463				67	0	0	75	8	9.63855
MB21D2	0	genome.wustl.edu	37	3	192517004	192517004	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	3	192517004	192517004	T	-	DEL	MB21D2	ENST00000392452	human	ensembl	74_37	-1	known	frame_shift_del	c.647	p.N216fs	1.000	NULL	pfam_Mab-21_dom	-	no_errors	MB21D2	HGNC	ENSG00000180611				183	0	0	183	16	8.0402
ACAP2	0	genome.wustl.edu	37	3	195063306	195063306	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	3	195063306	195063306	T	-	DEL	ACAP2	ENST00000326793	human	ensembl	74_37	-1	known	frame_shift_del	c.422	p.N141fs	1.000	NULL	pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	ACAP2	HGNC	ENSG00000114331				96	0	0	107	9	7.75862
ZNF385D	0	genome.wustl.edu	37	3	21478596	21478597	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	3	21478596	21478597	-	T	INS	ZNF385D	ENST00000281523	human	ensembl	74_37	-1	known	frame_shift_ins	c.539_538	p.S180fs	0.988:0.978	NULL	pfam_Znf_C2H2_jaz,smart_Znf_U1,smart_Znf_C2H2-like	-	no_errors	ZNF385D	HGNC	ENSG00000151789				213	0	0	230	20	8
EPM2AIP1	0	genome.wustl.edu	37	3	37034460	37034460	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	3	37034460	37034460	C	-	DEL	EPM2AIP1	ENST00000322716	human	ensembl	74_37	-1	known	frame_shift_del	c.109	p.A37fs	0.914	NULL	NULL	-	no_errors	EPM2AIP1	HGNC	ENSG00000178567				83	0	0	112	7	5.88235
MLH1	0	genome.wustl.edu	37	3	37053348	37053348	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	3	37053348	37053348	A	-	DEL	MLH1	ENST00000231790	human	ensembl	74_37	+1	known	frame_shift_del	c.583	p.K196fs	1.000	superfamily_HATPase_ATP-bd,tigrfam_DNA_mismatch_repair_N	pfam_DNA_mismatch_repair_C,pfam_HATPase_ATP-bd,superfamily_HATPase_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,tigrfam_DNA_mismatch_repair_N	-	no_errors	MLH1	HGNC	ENSG00000076242				394	0	0	401	47	10.4911
DLEC1	0	genome.wustl.edu	37	3	38104191	38104191	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	3	38104191	38104191	T	-	DEL	DLEC1	ENST00000346219	human	ensembl	74_37	+1	known	frame_shift_del	c.993	p.P334fs	0.288	NULL	superfamily_PapD-like	-	no_errors	DLEC1	HGNC	ENSG00000008226				125	0	0	136	15	9.93377
ZNF197	0	genome.wustl.edu	37	3	44684226	44684226	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	3	44684226	44684226	A	-	DEL	ZNF197	ENST00000344387	human	ensembl	74_37	+1	known	frame_shift_del	c.1604	p.K536fs	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF197	HGNC	ENSG00000186448				171	0	0	187	27	12.6168
ADAMTS9	0	genome.wustl.edu	37	3	64532503	64532503	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	3	64532503	64532503	G	-	DEL	ADAMTS9	ENST00000498707	human	ensembl	74_37	-1	known	frame_shift_del	c.4995	p.S1666fs	1.000	superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS9	HGNC	ENSG00000163638				126	0	0	128	14	9.85915
EPHA3	0	genome.wustl.edu	37	3	89468398	89468398	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	3	89468398	89468398	A	-	DEL	EPHA3	ENST00000336596	human	ensembl	74_37	+1	known	frame_shift_del	c.1932	p.E647fs	0.987	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_2,pfam_SAM_type1,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHA3	HGNC	ENSG00000044524				125	0	0	121	15	11.0294
CFI	0	genome.wustl.edu	37	4	110687927	110687927	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	4	110687927	110687927	T	-	DEL	CFI	ENST00000394634	human	ensembl	74_37	-1	known	frame_shift_del	c.111	p.K37fs	0.482	NULL	pfam_Peptidase_S1,pfam_LDrepeatLR_classA_rpt,pfam_SRCR,superfamily_Trypsin-like_Pept_dom,superfamily_Srcr_rcpt-rel,superfamily_LDrepeatLR_classA_rpt,smart_FacI_MAC,smart_Srcr_rcpt-rel,smart_LDrepeatLR_classA_rpt,smart_Peptidase_S1,pfscan_LDrepeatLR_classA_rpt,pfscan_SRCR,pfscan_Peptidase_S1,prints_Peptidase_S1A,prints_LDrepeatLR_classA_rpt	-	no_errors	CFI	HGNC	ENSG00000205403				128	1	0.775194	128	17	11.7241
TMA16	0	genome.wustl.edu	37	4	164428219	164428219	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	4	164428219	164428219	A	-	DEL	TMA16	ENST00000358572	human	ensembl	74_37	+1	known	frame_shift_del	c.38	p.V16fs	1.000	pfam_Tma16	pfam_Tma16	-	no_errors	TMA16	HGNC	ENSG00000198498				25	0	0	18	7	28
ZBTB49	0	genome.wustl.edu	37	4	4303754	4303754	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	4	4303754	4303754	T	-	DEL	ZBTB49	ENST00000337872	human	ensembl	74_37	+1	known	frame_shift_del	c.191	p.H66fs	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB49	HGNC	ENSG00000168826				92	0	0	59	10	14.4928
PROL1	0	genome.wustl.edu	37	4	71275496	71275498	+	In_Frame_Del	DEL	ACA	ACA	-			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	ACA	ACA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	4	71275496	71275498	ACA	-	DEL	PROL1	ENST00000399575	human	ensembl	74_37	+1	putative	in_frame_del	c.451_453	p.T152in_frame_del	0.000:0.002:0.000	NULL	NULL	-	no_errors	PROL1	HGNC	ENSG00000171199				123	0	0	90	13	12.6214
PTPN13	0	genome.wustl.edu	37	4	87622607	87622607	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	4	87622607	87622607	A	-	DEL	PTPN13	ENST00000436978	human	ensembl	74_37	+1	known	frame_shift_del	c.848	p.K285fs	0.941	pirsf_Tyr_Pase_non-rcpt_typ-13	pirsf_Tyr_Pase_non-rcpt_typ-13,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_PDZ,pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_FERM_central,superfamily_PDZ,superfamily_PAZ_dom,smart_KIND,smart_Band_41_domain,smart_PDZ,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam,pfscan_FERM_domain,pfscan_PDZ,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN13	HGNC	ENSG00000163629				55	0	0	66	17	20.4819
APC	0	genome.wustl.edu	37	5	112176675	112176676	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	5	112176675	112176676	-	A	INS	APC	ENST00000257430	human	ensembl	74_37	+1	known	frame_shift_ins	c.5384_5385	p.N1797fs	0.990:0.921	NULL	pfam_APC_basic_dom,pfam_EB1-bd,pfam_APC_Cys-rich_rpt,pfam_Armadillo,pfam_APC_dom,pfam_SAMP,pfam_APC_15aa_rpt,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	APC	HGNC	ENSG00000134982				50	0	0	42	12	22.2222
TCF7	0	genome.wustl.edu	37	5	133473765	133473765	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	5	133473765	133473765	C	-	DEL	TCF7	ENST00000321584	human	ensembl	74_37	+1	known	frame_shift_del	c.457	p.H155fs	1.000	pfam_CTNNB1-bd_N	pfam_CTNNB1-bd_N,pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	TCF7	HGNC	ENSG00000081059				127	0	0	130	17	11.5646
ZNF131	0	genome.wustl.edu	37	5	43173517	43173517	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	5	43173517	43173517	A	-	DEL	ZNF131	ENST00000399534	human	ensembl	74_37	+1	known	frame_shift_del	c.1152	p.G387fs	1.000	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZNF131	HGNC	ENSG00000172262				86	0	0	66	7	9.58904
BDP1	0	genome.wustl.edu	37	5	70766233	70766233	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	5	70766233	70766233	T	-	DEL	BDP1	ENST00000358731	human	ensembl	74_37	+1	known	frame_shift_del	c.931	p.L313fs	1.000	superfamily_Homeodomain-like,smart_SANT/Myb	superfamily_Homeodomain-like,smart_SANT/Myb	-	no_errors	BDP1	HGNC	ENSG00000145734				56	0	0	59	9	13.2353
MSH3	0	genome.wustl.edu	37	5	79970915	79970915	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	5	79970915	79970915	A	-	DEL	MSH3	ENST00000265081	human	ensembl	74_37	+1	known	frame_shift_del	c.1141	p.K383fs	0.982	pfam_DNA_mmatch_repair_MutS_con_dom,superfamily_DNA_mmatch_repair_MutS_con_dom	pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS_core,pfam_DNA_mmatch_repair_MutS_con_dom,pfam_DNA_mismatch_repair_MutS-lik_N,pfam_DNA_mismatch_repair_MutS_clamp,superfamily_DNA_mismatch_repair_MutS_core,superfamily_P-loop_NTPase,superfamily_DNA_mismatch_repair_MutS_N,superfamily_DNA_mmatch_repair_MutS_con_dom,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C	-	no_errors	MSH3	HGNC	ENSG00000113318				168	0	0	150	23	13.2948
REV3L	0	genome.wustl.edu	37	6	111695299	111695299	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	6	111695299	111695299	A	-	DEL	REV3L	ENST00000358835	human	ensembl	74_37	-1	known	frame_shift_del	c.4259	p.L1420fs	1.000	superfamily_RNaseH-like_dom	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B	-	no_errors	REV3L	HGNC	ENSG00000009413				183	0	0	194	30	13.3929
PRELID1P1	0	genome.wustl.edu	37	6	126964717	126964717	+	RNA	DEL	C	C	-			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	6	126964717	126964717	C	-	DEL	PRELID1P1	ENST00000567272	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.774	-	-	-	no_errors	PRELID1P1	HGNC	ENSG00000217325				13	0	0	6	4	40
SOGA3	0	genome.wustl.edu	37	6	127794434	127794435	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	6	127794434	127794435	-	A	INS	SOGA3	ENST00000368268	human	ensembl	74_37	-1	known	frame_shift_ins	c.2836_2835	p.V945fs	1.000:1.000	NULL	pfam_SOGA	-	no_errors	SOGA3	HGNC	ENSG00000214338				80	0	0	57	7	10.9375
CCDC28A	0	genome.wustl.edu	37	6	139097330	139097330	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	6	139097330	139097330	A	-	DEL	CCDC28A	ENST00000332797	human	ensembl	74_37	+1	known	frame_shift_del	c.343	p.N117fs	1.000	NULL	NULL	-	no_errors	CCDC28A	HGNC	ENSG00000024862				81	0	0	85	20	19.0476
DTNBP1	0	genome.wustl.edu	37	6	15638037	15638038	+	Splice_Site	INS	-	-	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	6	15638037	15638038	-	A	INS	DTNBP1	ENST00000355917	human	ensembl	74_37	-1	known	splice_site_ins	c.162-3_162-2	e4-2	1.000:0.999	-	-	-	no_errors	DTNBP1	HGNC	ENSG00000047579				142	0	0	135	9	6.25
HIST1H2BC	0	genome.wustl.edu	37	6	26123922	26123923	+	Frame_Shift_Del	DEL	AT	AT	-			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	AT	AT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	6	26123922	26123923	AT	-	DEL	HIST1H2BC	ENST00000314332	human	ensembl	74_37	-1	known	frame_shift_del	c.211_210	p.F71fs	1.000:1.000	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	HIST1H2BC	HGNC	ENSG00000180596				262	0	0	228	29	11.284
HIST1H1D	0	genome.wustl.edu	37	6	26234932	26234932	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	6	26234932	26234932	T	-	DEL	HIST1H1D	ENST00000244534	human	ensembl	74_37	-1	known	frame_shift_del	c.230	p.N77fs	1.000	pfam_Histone_H1/H5_H15,smart_Histone_H1/H5_H15,prints_Histone_H5	pfam_Histone_H1/H5_H15,smart_Histone_H1/H5_H15,prints_Histone_H5	-	no_errors	HIST1H1D	HGNC	ENSG00000124575				231	0	0	190	24	11.215
DNAH8	0	genome.wustl.edu	37	6	38831685	38831697	+	Frame_Shift_Del	DEL	AGTTTAACAGAAT	AGTTTAACAGAAT	-			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	AGTTTAACAGAAT	AGTTTAACAGAAT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	6	38831685	38831697	AGTTTAACAGAAT	-	DEL	DNAH8	ENST00000359357	human	ensembl	74_37	+1	known	frame_shift_del	c.5696_5708	p.E1899fs	1.000:1.000:1.000:1.000:0.995:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH8	HGNC	ENSG00000124721				146	0	0	133	8	5.67376
SRF	0	genome.wustl.edu	37	6	43143662	43143663	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	6	43143662	43143663	-	G	INS	SRF	ENST00000265354	human	ensembl	74_37	+1	known	frame_shift_ins	c.999_1000	p.L335fs	0.858:1.000	NULL	pfam_TF_MADSbox,superfamily_TF_MADSbox,smart_TF_MADSbox,pfscan_TF_MADSbox,prints_TF_MADSbox	-	no_errors	SRF	HGNC	ENSG00000112658				75	0	0	60	6	9.09091
ENPP4	0	genome.wustl.edu	37	6	46107942	46107942	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	6	46107942	46107942	A	-	DEL	ENPP4	ENST00000321037	human	ensembl	74_37	+1	known	frame_shift_del	c.622	p.I210fs	0.950	pfam_Phosphodiest/P_Trfase,pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	pfam_Phosphodiest/P_Trfase,pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	-	no_errors	ENPP4	HGNC	ENSG00000001561				109	0	0	99	15	13.1579
F13A1	0	genome.wustl.edu	37	6	6266965	6266965	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	6	6266965	6266965	C	-	DEL	F13A1	ENST00000264870	human	ensembl	74_37	-1	known	frame_shift_del	c.397	p.A133fs	1.000	pfam_Transglutaminase_N,superfamily_Ig_E-set	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	F13A1	HGNC	ENSG00000124491				123	0	0	104	14	11.8644
TTK	0	genome.wustl.edu	37	6	80751897	80751897	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	6	80751897	80751897	A	-	DEL	TTK	ENST00000369798	human	ensembl	74_37	+1	known	frame_shift_del	c.2552	p.R854fs	0.102	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TTK	HGNC	ENSG00000112742				109	0	0	87	13	13
LRRC17	0	genome.wustl.edu	37	7	102584993	102584993	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	7	102584993	102584993	A	-	DEL	LRRC17	ENST00000339431	human	ensembl	74_37	+1	known	frame_shift_del	c.1265	p.K424fs	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	LRRC17	HGNC	ENSG00000128606				67	0	0	51	8	13.5593
HNRNPA2B1	0	genome.wustl.edu	37	7	26236525	26236526	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	7	26236525	26236526	-	T	INS	HNRNPA2B1	ENST00000354667	human	ensembl	74_37	-1	known	frame_shift_ins	c.413_412	p.I138fs	1.000:1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,pfam_HnRNPA1,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HNRNPA2B1	HGNC	ENSG00000122566				209	0	0	178	23	11.4428
FIGNL1	0	genome.wustl.edu	37	7	50514060	50514060	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	7	50514060	50514060	T	-	DEL	FIGNL1	ENST00000356889	human	ensembl	74_37	-1	known	frame_shift_del	c.926	p.K309fs	0.976	NULL	pfam_ATPase_AAA_core,pfam_Vps4_C,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	FIGNL1	HGNC	ENSG00000132436				98	0	0	111	11	9.01639
TRRAP	0	genome.wustl.edu	37	7	98567888	98567889	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	7	98567888	98567889	-	G	INS	TRRAP	ENST00000359863	human	ensembl	74_37	+1	known	frame_shift_ins	c.7645_7646	p.E2550fs	1.000:1.000	superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	TRRAP	HGNC	ENSG00000196367				115	0	0	112	7	5.88235
RGS22	0	genome.wustl.edu	37	8	101092539	101092539	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	8	101092539	101092539	A	-	DEL	RGS22	ENST00000360863	human	ensembl	74_37	-1	known	frame_shift_del	c.162	p.F54fs	1.000	NULL	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam	-	no_errors	RGS22	HGNC	ENSG00000132554				52	0	0	54	6	10
RIMS2	0	genome.wustl.edu	37	8	104927779	104927779	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	8	104927779	104927779	A	-	DEL	RIMS2	ENST00000406091	human	ensembl	74_37	+1	known	frame_shift_del	c.1869	p.G626fs	0.009	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_Znf_FYVE_PHD,superfamily_PDZ,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ,pfscan_Znf_FYVE-typ,pfscan_Znf_FYVE-rel	-	no_errors	RIMS2	HGNC	ENSG00000176406				53	0	0	70	13	15.6627
ZHX2	0	genome.wustl.edu	37	8	123965544	123965545	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	8	123965544	123965545	-	A	INS	ZHX2	ENST00000314393	human	ensembl	74_37	+1	known	frame_shift_ins	c.1794_1795	p.G600fs	1.000:1.000	superfamily_Homeodomain-like	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZHX2	HGNC	ENSG00000178764				101	0	0	87	9	9.375
ZNF623	0	genome.wustl.edu	37	8	144732382	144732383	+	Frame_Shift_Ins	INS	-	-	AG			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	8	144732382	144732383	-	AG	INS	ZNF623	ENST00000501748	human	ensembl	74_37	+1	known	frame_shift_ins	c.340_341	p.L117fs	0.992:0.996	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF623	HGNC	ENSG00000183309				160	0	0	197	25	11.2613
ZNF395	0	genome.wustl.edu	37	8	28210809	28210809	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	8	28210809	28210809	G	-	DEL	ZNF395	ENST00000344423	human	ensembl	74_37	-1	known	frame_shift_del	c.700	p.H234fs	1.000	NULL	pfscan_Znf_C2H2	-	no_errors	ZNF395	HGNC	ENSG00000186918				84	0	0	99	7	6.60377
PRKDC	0	genome.wustl.edu	37	8	48694762	48694762	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	8	48694762	48694762	A	-	DEL	PRKDC	ENST00000314191	human	ensembl	74_37	-1	known	frame_shift_del	c.11447	p.L3816fs	0.000	pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_NUC194,pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PRKDC	HGNC	ENSG00000253729				152	0	0	109	7	6.03448
SULF1	0	genome.wustl.edu	37	8	70488249	70488249	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	8	70488249	70488249	G	-	DEL	SULF1	ENST00000260128	human	ensembl	74_37	+1	known	frame_shift_del	c.217	p.A75fs	0.999	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core,pirsf_Extracellular_sulfatase	pfam_Sulfatase,pfam_Extracellular_sulfatase_C,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core,pirsf_Extracellular_sulfatase	-	no_errors	SULF1	HGNC	ENSG00000137573				53	0	0	47	7	12.963
COL15A1	0	genome.wustl.edu	37	9	101748037	101748038	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	9	101748037	101748038	-	A	INS	COL15A1	ENST00000375001	human	ensembl	74_37	+1	known	frame_shift_ins	c.291_292	p.P98fs	0.949:0.997	superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	pfam_Collagenase_NC10/endostatin,pfam_Collagen,superfamily_C-type_lectin_fold,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	-	no_errors	COL15A1	HGNC	ENSG00000204291				91	0	0	53	5	8.62069
IKBKAP	0	genome.wustl.edu	37	9	111681574	111681575	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	9	111681574	111681575	-	C	INS	IKBKAP	ENST00000374647	human	ensembl	74_37	-1	known	frame_shift_ins	c.608_607	p.D203fs	1.000:1.000	pfam_IKI3,pirsf_IKI3	pfam_IKI3,superfamily_ARM-type_fold,superfamily_UBA-like,pirsf_IKI3	-	no_errors	IKBKAP	HGNC	ENSG00000070061				58	0	0	38	6	13.6364
MPDZ	0	genome.wustl.edu	37	9	13125277	13125277	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	9	13125277	13125277	T	-	DEL	MPDZ	ENST00000319217	human	ensembl	74_37	-1	known	frame_shift_del	c.4745	p.K1582fs	0.029	NULL	pfam_PDZ,pfam_L27_2,superfamily_PDZ,smart_PDZ,pfscan_L27,pfscan_PDZ	-	no_errors	MPDZ	HGNC	ENSG00000107186				150	0	0	159	18	10.1695
DOLK	0	genome.wustl.edu	37	9	131708196	131708196	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	9	131708196	131708196	C	-	DEL	DOLK	ENST00000372586	human	ensembl	74_37	-1	known	frame_shift_del	c.1387	p.E463fs	1.000	NULL	NULL	-	no_errors	DOLK	HGNC	ENSG00000175283				149	0	0	152	18	10.5882
PPP1R26	0	genome.wustl.edu	37	9	138376947	138376947	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	9	138376947	138376947	C	-	DEL	PPP1R26	ENST00000356818	human	ensembl	74_37	+1	known	frame_shift_del	c.591	p.G199fs	0.000	NULL	NULL	-	no_errors	PPP1R26	HGNC	ENSG00000196422				139	0	0	150	14	8.53659
PPP1R26	0	genome.wustl.edu	37	9	138379043	138379043	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	9	138379043	138379043	G	-	DEL	PPP1R26	ENST00000356818	human	ensembl	74_37	+1	known	frame_shift_del	c.2687	p.V898fs	0.002	NULL	NULL	-	no_errors	PPP1R26	HGNC	ENSG00000196422				114	0	0	103	17	14.1667
TAF1L	0	genome.wustl.edu	37	9	32632794	32632794	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	9	32632794	32632794	A	-	DEL	TAF1L	ENST00000242310	human	ensembl	74_37	-1	known	frame_shift_del	c.2784	p.F928fs	1.000	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	TAF1L	HGNC	ENSG00000122728				200	0	0	132	25	15.9236
GPR112	0	genome.wustl.edu	37	X	135488065	135488065	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	X	135488065	135488065	T	-	DEL	GPR112	ENST00000370652	human	ensembl	74_37	+1	known	frame_shift_del	c.8869	p.F2958fs	1.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Pentaxin,superfamily_ConA-like_lec_gl_sf,smart_Pentaxin,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR112	HGNC	ENSG00000156920				165	0	0	165	43	20.6731
HDAC6	0	genome.wustl.edu	37	X	48681900	48681901	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	X	48681900	48681901	-	C	INS	HDAC6	ENST00000444343	human	ensembl	74_37	+1	known	frame_shift_ins	c.3133_3134	p.T1048fs	0.328:0.014	NULL	pfam_His_deacetylse_dom,pfam_Znf_UBP,smart_Znf_UBP,pfscan_Znf_UBP,prints_His_deacetylse	-	no_errors	HDAC6	HGNC	ENSG00000094631				20	0	0	15	4	21.0526
SPIN3	0	genome.wustl.edu	37	X	57020676	57020676	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	X	57020676	57020676	T	-	DEL	SPIN3	ENST00000374919	human	ensembl	74_37	-1	known	frame_shift_del	c.705	p.K235fs	0.995	pfam_Spin_Ssty	pfam_Spin_Ssty	-	no_errors	SPIN3	HGNC	ENSG00000204271				51	0	0	66	10	13.1579
PCDH11Y	0	genome.wustl.edu	37	Y	4967616	4967616	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6802-01A-11D-1882-08	TCGA-BR-6802-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3725a6f-6ed6-4b8d-8d69-091058167abd	1f579d9f-6205-4095-a016-35ac9bd25f07	Y	4967616	4967616	A	-	DEL	PCDH11Y	ENST00000215473	human	ensembl	74_37	+1	known	frame_shift_del	c.1997	p.K667fs	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH11Y	HGNC	ENSG00000099715				83	0	0	87	5	5.43478
