Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
SLC35A3	0	genome.wustl.edu	37	1	100483314	100483314	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	100483314	100483314	C	T	SNP	SLC35A3	ENST00000370153	human	ensembl	74_37	+1	known	missense	c.956	p.S319L	1.000	pfam_Nuc_sug_transpt,pfam_UAA,pirsf_UDP/CMP-sugar_transptr,tigrfam_UDPgal_transpt	pfam_Nuc_sug_transpt,pfam_UAA,pfam_DMT,pfam_Tpt_PEP_trans_dom,pirsf_UDP/CMP-sugar_transptr,tigrfam_UDPgal_transpt	-	no_errors	SLC35A3	HGNC	ENSG00000117620				66	0	0	50	5	9.09091
CELSR2	0	genome.wustl.edu	37	1	109811843	109811843	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	109811843	109811843	G	A	SNP	CELSR2	ENST00000271332	human	ensembl	74_37	+1	known	missense	c.6743	p.S2248N	0.994	pfam_DUF3497	pfam_Cadherin,pfam_DUF3497,pfam_Laminin_G,pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EG-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR2	HGNC	ENSG00000143126				55	0	0	46	3	6.12245
CYB561D1	0	genome.wustl.edu	37	1	110038475	110038475	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	110038475	110038475	C	T	SNP	CYB561D1	ENST00000310611	human	ensembl	74_37	+1	known	nonsense	c.388	p.Q130*	0.009	NULL	NULL	-	no_errors	CYB561D1	HGNC	ENSG00000174151				231	0	0	223	44	16.4794
KCNA3	0	genome.wustl.edu	37	1	111216271	111216271	+	Silent	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	111216271	111216271	G	A	SNP	KCNA3	ENST00000369769	human	ensembl	74_37	-1	known	silent	c.1161	p.L387	1.000	pfam_Ion_trans_dom,prints_K_chnl	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.3,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA3	HGNC	ENSG00000177272				132	1	0.75188	114	19	14.2857
MTOR	0	genome.wustl.edu	37	1	11184566	11184566	+	Silent	SNP	C	C	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	11184566	11184566	C	G	SNP	MTOR	ENST00000361445	human	ensembl	74_37	-1	known	silent	c.6651	p.R2217	0.994	pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_DUF3385_TOR,pfam_Rapamycin-bd_dom,pfam_FATC,superfamily_ARM-type_fold,superfamily_Kinase-like_dom,superfamily_Rapamycin-bd_dom,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	MTOR	HGNC	ENSG00000198793				80	0	0	54	10	15.625
WNT2B	0	genome.wustl.edu	37	1	113059876	113059876	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	113059876	113059876	C	A	SNP	WNT2B	ENST00000369684	human	ensembl	74_37	+1	known	missense	c.815	p.A272D	1.000	pfam_Wnt,smart_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt2	-	no_errors	WNT2B	HGNC	ENSG00000134245				64	0	0	55	10	15.3846
MOV10	0	genome.wustl.edu	37	1	113232051	113232051	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	113232051	113232051	A	G	SNP	MOV10	ENST00000357443	human	ensembl	74_37	+1	known	missense	c.356	p.H119R	0.879	NULL	superfamily_P-loop_NTPase	-	no_errors	MOV10	HGNC	ENSG00000155363				110	0	0	100	6	5.66038
MOV10	0	genome.wustl.edu	37	1	113237131	113237131	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	113237131	113237131	G	A	SNP	MOV10	ENST00000357443	human	ensembl	74_37	+1	known	missense	c.1352	p.R451H	1.000	NULL	superfamily_P-loop_NTPase	-	no_errors	MOV10	HGNC	ENSG00000155363				69	0	0	56	13	18.8406
MFN2	0	genome.wustl.edu	37	1	12052744	12052744	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	12052744	12052744	G	T	SNP	MFN2	ENST00000235329	human	ensembl	74_37	+1	known	missense	c.308	p.G103V	1.000	pfam_Dynamin_GTPase,superfamily_P-loop_NTPase	pfam_Fzo/mitofusin_HR2,pfam_Dynamin_GTPase,superfamily_P-loop_NTPase	-	no_errors	MFN2	HGNC	ENSG00000116688				218	0	0	188	33	14.9321
VPS13D	0	genome.wustl.edu	37	1	12328778	12328778	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	12328778	12328778	G	A	SNP	VPS13D	ENST00000358136	human	ensembl	74_37	+1	known	missense	c.1817	p.G606D	0.979	NULL	pfam_VPSAP_dom,pfam_UBA/Ts_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	VPS13D	HGNC	ENSG00000048707				371	0	0	304	47	13.3903
ATAD3C	0	genome.wustl.edu	37	1	1397981	1397981	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	1397981	1397981	C	T	SNP	ATAD3C	ENST00000378785	human	ensembl	74_37	+1	known	missense	c.982	p.R328C	1.000	superfamily_P-loop_NTPase	pfam_DUF3523,pfam_ATPase_AAA_core,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	ATAD3C	HGNC	ENSG00000215915				23	0	0	20	3	13.0435
ENSG00000255168	0	genome.wustl.edu	37	1	145273302	145273302	+	Silent	SNP	A	A	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	145273302	145273302	A	T	SNP	ENSG00000255168	ENST00000468030	human	ensembl	74_37	+1	known	silent	c.156	p.R52	0.989	pfam_EG-like_dom,pfam_EGF_extracell,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_EG-like_dom,pfam_EGF_extracell,pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	-	no_errors	RP11-458D21.5	Clone_based_vega_gene	ENSG00000255168				376	0	0	348	23	6.19946
SETDB1	0	genome.wustl.edu	37	1	150917632	150917632	+	Silent	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	150917632	150917632	A	G	SNP	SETDB1	ENST00000368962	human	ensembl	74_37	+1	known	silent	c.1188	p.G396	0.000	NULL	smart_Tudor	-	no_errors	SETDB1	HGNC	ENSG00000143379				32	0	0	30	4	11.7647
RORC	0	genome.wustl.edu	37	1	151785852	151785852	+	RNA	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	151785852	151785852	C	T	SNP	RORC	ENST00000480719	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	RORC	HGNC	ENSG00000143365				152	1	0.653595	117	26	18.1818
NBPF18P	0	genome.wustl.edu	37	1	151991166	151991166	+	RNA	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	151991166	151991166	G	A	SNP	NBPF18P	ENST00000432386	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	NBPF18P	HGNC	ENSG00000229021				80	0	0	63	10	13.6986
FLG	0	genome.wustl.edu	37	1	152283879	152283879	+	Silent	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	152283879	152283879	A	G	SNP	FLG	ENST00000368799	human	ensembl	74_37	-1	known	silent	c.3483	p.G1161	0.000	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631				743	1	0.134409	605	90	12.9496
FLG2	0	genome.wustl.edu	37	1	152329960	152329960	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	152329960	152329960	T	C	SNP	FLG2	ENST00000388718	human	ensembl	74_37	-1	known	missense	c.302	p.K101R	0.993	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG2	HGNC	ENSG00000143520				88	0	0	74	19	20.4301
KAZN	0	genome.wustl.edu	37	1	15370596	15370596	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	15370596	15370596	C	T	SNP	KAZN	ENST00000376030	human	ensembl	74_37	+1	known	missense	c.667	p.R223C	1.000	NULL	pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	KAZN	HGNC	ENSG00000189337				82	0	0	57	24	29.6296
EFNA1	0	genome.wustl.edu	37	1	155103820	155103820	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	155103820	155103820	G	A	SNP	EFNA1	ENST00000368407	human	ensembl	74_37	+1	known	missense	c.98	p.R33Q	0.857	pfam_Ephrin,superfamily_Cupredoxin,prints_Ephrin	pfam_Ephrin,superfamily_Cupredoxin,prints_Ephrin	-	no_errors	EFNA1	HGNC	ENSG00000169242				84	0	0	71	6	7.79221
PKLR	0	genome.wustl.edu	37	1	155263247	155263247	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	155263247	155263247	C	T	SNP	PKLR	ENST00000342741	human	ensembl	74_37	-1	known	silent	c.1251	p.A417	0.802	pfam_Pyrv_Knase_brl,superfamily_Pyrv/PenolPyrv_Kinase-like_dom,prints_Pyr_Knase,tigrfam_Pyr_Knase	pfam_Pyrv_Knase_brl,pfam_Pyrv_Knase_C,superfamily_Pyrv/PenolPyrv_Kinase-like_dom,superfamily_Pyrv_Knase_C,superfamily_Pyrv_Knase-like_insert_dom,prints_Pyr_Knase,tigrfam_Pyr_Knase	-	no_errors	PKLR	HGNC	ENSG00000143627				57	0	0	44	10	18.5185
PKLR	0	genome.wustl.edu	37	1	155264098	155264098	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	155264098	155264098	C	A	SNP	PKLR	ENST00000342741	human	ensembl	74_37	-1	known	missense	c.1044	p.K348N	1.000	pfam_Pyrv_Knase_brl,superfamily_Pyrv/PenolPyrv_Kinase-like_dom,prints_Pyr_Knase,tigrfam_Pyr_Knase	pfam_Pyrv_Knase_brl,pfam_Pyrv_Knase_C,superfamily_Pyrv/PenolPyrv_Kinase-like_dom,superfamily_Pyrv_Knase_C,superfamily_Pyrv_Knase-like_insert_dom,prints_Pyr_Knase,tigrfam_Pyr_Knase	-	no_errors	PKLR	HGNC	ENSG00000143627				68	0	0	39	14	26.4151
FCRL3	0	genome.wustl.edu	37	1	157667456	157667456	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	157667456	157667456	T	G	SNP	FCRL3	ENST00000492769	human	ensembl	74_37	-1	known	missense	c.552	p.Q184H	0.044	smart_Ig_sub	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	FCRL3	HGNC	ENSG00000160856				81	0	0	79	17	17.7083
CD1D	0	genome.wustl.edu	37	1	158151478	158151478	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	158151478	158151478	G	A	SNP	CD1D	ENST00000368171	human	ensembl	74_37	+1	known	missense	c.295	p.V99M	0.000	superfamily_MHC_I/II-like_Ag-recog	pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	CD1D	HGNC	ENSG00000158473				81	0	0	68	16	19.0476
CCDC19	0	genome.wustl.edu	37	1	159857704	159857704	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	159857704	159857704	C	T	SNP	CCDC19	ENST00000368099	human	ensembl	74_37	-1	known	missense	c.515	p.R172Q	1.000	NULL	NULL	-	no_errors	CCDC19	HGNC	ENSG00000213085				238	1	0.41841	174	47	21.267
ATP1A4	0	genome.wustl.edu	37	1	160137172	160137172	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	160137172	160137172	G	T	SNP	ATP1A4	ENST00000368081	human	ensembl	74_37	+1	known	missense	c.1461	p.E487D	1.000	pfam_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Na/K_IIC	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP1A4	HGNC	ENSG00000132681				173	0	0	174	10	5.43478
SLAMF1	0	genome.wustl.edu	37	1	160607007	160607007	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	160607007	160607007	C	T	SNP	SLAMF1	ENST00000302035	human	ensembl	74_37	-1	known	missense	c.389	p.R130H	0.000	NULL	pfam_Sig_lymph_act_molc_N,pfscan_Ig-like_dom	-	no_errors	SLAMF1	HGNC	ENSG00000117090				118	0	0	102	19	15.7025
USP21	0	genome.wustl.edu	37	1	161133376	161133376	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	161133376	161133376	C	T	SNP	USP21	ENST00000289865	human	ensembl	74_37	+1	known	missense	c.1081	p.R361C	0.994	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP21	HGNC	ENSG00000143258				85	0	0	67	5	6.94444
TOMM40L	0	genome.wustl.edu	37	1	161198233	161198233	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	161198233	161198233	C	A	SNP	TOMM40L	ENST00000367987	human	ensembl	74_37	+1	known	missense	c.623	p.A208D	1.000	pfam_Porin_Euk/Tom40	pfam_Porin_Euk/Tom40	-	no_errors	TOMM40L	HGNC	ENSG00000158882				85	0	0	67	7	9.45946
HSPA6	0	genome.wustl.edu	37	1	161495324	161495324	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	161495324	161495324	C	T	SNP	HSPA6	ENST00000309758	human	ensembl	74_37	+1	known	silent	c.876	p.G292	0.987	pfam_Hsp_70_fam,pfam_MreB_Mrl	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPA6	HGNC	ENSG00000173110				37	0	0	27	9	25
SPEN	0	genome.wustl.edu	37	1	16265849	16265849	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	16265849	16265849	G	A	SNP	SPEN	ENST00000375759	human	ensembl	74_37	+1	known	missense	c.10922	p.R3641H	0.974	superfamily_SPOC_like_C_dom,pfscan_SPOC_met	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC_like_C_dom,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526				270	0	0	214	58	21.3235
F5	0	genome.wustl.edu	37	1	169541498	169541498	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	169541498	169541498	T	C	SNP	F5	ENST00000367797	human	ensembl	74_37	-1	known	missense	c.334	p.I112V	1.000	pfam_Cu-oxidase_3,superfamily_Cupredoxin	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	F5	HGNC	ENSG00000198734				48	0	0	38	11	22.449
DNM3	0	genome.wustl.edu	37	1	172002361	172002361	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	172002361	172002361	G	A	SNP	DNM3	ENST00000358155	human	ensembl	74_37	+1	known	missense	c.805	p.A269T	1.000	pfam_Dynamin_central,superfamily_P-loop_NTPase	pfam_Dynamin_central,pfam_Dynamin_GTPase,pfam_GED,pfam_Pleckstrin_homology,superfamily_P-loop_NTPase,smart_Dynamin_GTPase,smart_Pleckstrin_homology,smart_GED,pfscan_Pleckstrin_homology,prints_Dynamin_SF	-	no_errors	DNM3	HGNC	ENSG00000197959				22	0	0	19	4	17.3913
C1orf105	0	genome.wustl.edu	37	1	172431363	172431363	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	172431363	172431363	T	G	SNP	C1orf105	ENST00000367727	human	ensembl	74_37	+1	known	missense	c.319	p.F107V	0.755	NULL	NULL	-	no_errors	C1orf105	HGNC	ENSG00000180999				44	0	0	19	6	24
NPHS2	0	genome.wustl.edu	37	1	179526176	179526176	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	179526176	179526176	C	T	SNP	NPHS2	ENST00000367615	human	ensembl	74_37	-1	known	missense	c.724	p.A242T	1.000	pfam_Band_7,smart_Band_7,prints_Stomatin	pfam_Band_7,smart_Band_7,prints_Stomatin	-	no_errors	NPHS2	HGNC	ENSG00000116218				33	0	0	31	7	18.4211
ARHGEF10L	0	genome.wustl.edu	37	1	18014124	18014124	+	Silent	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	18014124	18014124	G	A	SNP	ARHGEF10L	ENST00000361221	human	ensembl	74_37	+1	known	silent	c.3066	p.A1022	0.008	superfamily_WD40_repeat_dom	pfam_DH-domain,superfamily_DH-domain,superfamily_WD40_repeat_dom,smart_DH-domain,pfscan_DH-domain	-	no_errors	ARHGEF10L	HGNC	ENSG00000074964				74	0	0	62	19	23.4568
CACNA1E	0	genome.wustl.edu	37	1	181701981	181701981	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	181701981	181701981	G	A	SNP	CACNA1E	ENST00000367573	human	ensembl	74_37	+1	known	missense	c.2759	p.R920H	1.000	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_hand_dom,prints_VDCCAlpha1,prints_VDCC_R_a1su	-	no_errors	CACNA1E	HGNC	ENSG00000198216				152	0	0	110	11	9.09091
TPR	0	genome.wustl.edu	37	1	186302450	186302450	+	Silent	SNP	A	A	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	186302450	186302450	A	C	SNP	TPR	ENST00000367478	human	ensembl	74_37	-1	known	silent	c.5259	p.P1753	1.000	NULL	pfam_TPR_MLP1_2,superfamily_Prefoldin,superfamily_tRNA-bd_arm	-	no_errors	TPR	HGNC	ENSG00000047410				83	0	0	79	16	16.8421
UBR4	0	genome.wustl.edu	37	1	19404515	19404515	+	Silent	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	19404515	19404515	G	A	SNP	UBR4	ENST00000375267	human	ensembl	74_37	-1	known	silent	c.15279	p.S5093	0.994	NULL	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR4	HGNC	ENSG00000127481				50	0	0	38	9	19.1489
F13B	0	genome.wustl.edu	37	1	197032103	197032103	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	197032103	197032103	C	T	SNP	F13B	ENST00000367412	human	ensembl	74_37	-1	known	missense	c.149	p.S50N	0.044	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	F13B	HGNC	ENSG00000143278				227	0	0	169	28	14.2132
DENND1B	0	genome.wustl.edu	37	1	197621390	197621390	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	197621390	197621390	G	A	SNP	DENND1B	ENST00000367396	human	ensembl	74_37	-1	known	missense	c.422	p.A141V	1.000	pfam_DENN_dom,smart_DENN_dom,pfscan_DENN_dom	pfam_DENN_dom,pfam_dDENN_dom,pfam_uDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND1B	HGNC	ENSG00000213047				47	0	0	41	5	10.8696
PTPRC	0	genome.wustl.edu	37	1	198711490	198711490	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	198711490	198711490	A	C	SNP	PTPRC	ENST00000442510	human	ensembl	74_37	+1	known	missense	c.2691	p.Q897H	1.000	pirsf_Leukocyte_common_ag,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	pirsf_Leukocyte_common_ag,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Leukocyte_common_ag,pfam_PTP_recept_N,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRC	HGNC	ENSG00000081237				111	0	0	101	21	17.2131
ELF3	0	genome.wustl.edu	37	1	201983058	201983058	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	201983058	201983058	T	A	SNP	ELF3	ENST00000359651	human	ensembl	74_37	+1	known	missense	c.907	p.F303I	1.000	pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	pfam_Ets_dom,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	ELF3	HGNC	ENSG00000163435				31	0	0	31	8	20.5128
KDM5B	0	genome.wustl.edu	37	1	202702738	202702738	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	202702738	202702738	G	A	SNP	KDM5B	ENST00000367264	human	ensembl	74_37	-1	known	missense	c.3808	p.P1270S	1.000	NULL	pfam_Lys_sp_deMease_like_dom,pfam_JmjC_dom,pfam_Znf_PHD-finger,pfam_ARID/BRIGHT_DNA-bd,pfam_Znf_C5HC2,pfam_TF_JmjN,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_Znf_PHD,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	KDM5B	HGNC	ENSG00000117139				110	0	0	68	16	19.0476
ATP2B4	0	genome.wustl.edu	37	1	203669950	203669950	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	203669950	203669950	G	A	SNP	ATP2B4	ENST00000357681	human	ensembl	74_37	+1	known	missense	c.800	p.G267D	1.000	pfam_ATPase_P-typ_transduc_dom_A,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_plasma,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP2B4	HGNC	ENSG00000058668				111	0	0	94	16	14.5455
MDM4	0	genome.wustl.edu	37	1	204506617	204506617	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	204506617	204506617	C	A	SNP	MDM4	ENST00000367182	human	ensembl	74_37	+1	known	missense	c.403	p.Q135K	1.000	pirsf_p53_neg-reg_MDM_2/4	pfam_SWIB_MDM2_domain,superfamily_SWIB_MDM2_domain,pirsf_p53_neg-reg_MDM_2/4,pfscan_Znf_RanBP2,pfscan_Znf_RING	-	no_errors	MDM4	HGNC	ENSG00000198625				132	0	0	111	32	22.3776
LRRN2	0	genome.wustl.edu	37	1	204588433	204588433	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	204588433	204588433	C	T	SNP	LRRN2	ENST00000367175	human	ensembl	74_37	-1	known	missense	c.688	p.D230N	0.994	smart_Leu-rich_rpt_typical-subtyp	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LRRN2	HGNC	ENSG00000170382				81	0	0	64	12	15.7895
SLC41A1	0	genome.wustl.edu	37	1	205764510	205764510	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	205764510	205764510	C	T	SNP	SLC41A1	ENST00000367137	human	ensembl	74_37	-1	known	missense	c.1169	p.R390H	1.000	pfam_SLC41_membr_dom	pfam_SLC41_membr_dom	-	no_errors	SLC41A1	HGNC	ENSG00000133065				48	0	0	42	11	20.7547
AVPR1B	0	genome.wustl.edu	37	1	206225358	206225358	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	206225358	206225358	G	A	SNP	AVPR1B	ENST00000367126	human	ensembl	74_37	+1	known	nonsense	c.918	p.W306*	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_Vasoprsn_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_Vprs_rcpt_V1B,prints_Vasoprsn_rcpt,prints_GPCR_Rhodpsn,prints_Vprs_V1A_rcpt	-	no_errors	AVPR1B	HGNC	ENSG00000198049				95	0	0	88	22	20
PFKFB2	0	genome.wustl.edu	37	1	207240864	207240864	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	207240864	207240864	T	C	SNP	PFKFB2	ENST00000367080	human	ensembl	74_37	+1	known	missense	c.653	p.V218A	1.000	pfam_6Phosfructo_kin,superfamily_P-loop_NTPase,pirsf_Bifunct_6PFK/fruc_bisP_Ptase	pfam_6Phosfructo_kin,pfam_His_Pase_superF_clade-1,pfam_Chromatin_KTI12,superfamily_P-loop_NTPase,smart_His_Pase_superF_clade-1,pirsf_Bifunct_6PFK/fruc_bisP_Ptase,prints_6Pfruct_kin	-	no_errors	PFKFB2	HGNC	ENSG00000123836				106	0	0	95	6	5.94059
KIF17	0	genome.wustl.edu	37	1	20998683	20998683	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	20998683	20998683	C	T	SNP	KIF17	ENST00000247986	human	ensembl	74_37	-1	known	missense	c.2470	p.A824T	1.000	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF17	HGNC	ENSG00000117245				47	0	0	46	6	11.5385
C1orf86	0	genome.wustl.edu	37	1	2116304	2116304	+	RNA	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	2116304	2116304	C	T	SNP	C1orf86	ENST00000469733	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	C1orf86	HGNC	ENSG00000162585				12	0	0	8	5	38.4615
GPATCH2	0	genome.wustl.edu	37	1	217671763	217671763	+	RNA	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	217671763	217671763	A	G	SNP	GPATCH2	ENST00000489246	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.731	-	-	-	no_errors	GPATCH2	HGNC	ENSG00000092978				163	0	0	128	32	20
RAP1GAP	0	genome.wustl.edu	37	1	21929337	21929337	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	21929337	21929337	C	T	SNP	RAP1GAP	ENST00000290101	human	ensembl	74_37	-1	known	missense	c.1690	p.A564T	1.000	NULL	pfam_Rap_GAP_dom,pfam_GoLoco_motif,smart_GoLoco_motif,pfscan_GoLoco_motif,pfscan_Rap_GAP_dom	-	no_errors	RAP1GAP	HGNC	ENSG00000076864				82	0	0	75	6	7.40741
BROX	0	genome.wustl.edu	37	1	222889118	222889118	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	222889118	222889118	G	A	SNP	BROX	ENST00000539697	human	ensembl	74_37	+1	known	missense	c.77	p.G26D	0.044	NULL	pfam_BRO1_dom,pfscan_BRO1_dom	-	no_errors	BROX	HGNC	ENSG00000162819				69	0	0	60	16	21.0526
BROX	0	genome.wustl.edu	37	1	222898880	222898880	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	222898880	222898880	A	G	SNP	BROX	ENST00000539697	human	ensembl	74_37	+1	known	missense	c.467	p.Q156R	1.000	pfam_BRO1_dom,pfscan_BRO1_dom	pfam_BRO1_dom,pfscan_BRO1_dom	-	no_errors	BROX	HGNC	ENSG00000162819				33	0	0	22	3	12
DISP1	0	genome.wustl.edu	37	1	223177973	223177973	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	223177973	223177973	C	T	SNP	DISP1	ENST00000284476	human	ensembl	74_37	+1	novel	silent	c.3234	p.R1078	1.000	pfam_Patched,pfam_MMPL_dom	pfam_Patched,pfam_MMPL_dom,pfscan_SSD	-	no_errors	DISP1	HGNC	ENSG00000154309				82	0	0	74	7	8.64198
CNIH3	0	genome.wustl.edu	37	1	224922304	224922304	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	224922304	224922304	C	T	SNP	CNIH3	ENST00000272133	human	ensembl	74_37	+1	known	silent	c.351	p.Y117	1.000	pfam_Cornichon	pfam_Cornichon	-	no_errors	CNIH3	HGNC	ENSG00000143786				102	0	0	89	14	13.5922
GJC2	0	genome.wustl.edu	37	1	228345675	228345675	+	Silent	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	228345675	228345675	G	A	SNP	GJC2	ENST00000366714	human	ensembl	74_37	+1	known	silent	c.216	p.A72	0.955	pfam_Connexin_N,smart_Connexin_N,prints_Connexin	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin	-	no_errors	GJC2	HGNC	ENSG00000198835				46	0	0	29	12	29.2683
PCNXL2	0	genome.wustl.edu	37	1	233397834	233397834	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	233397834	233397834	G	A	SNP	PCNXL2	ENST00000258229	human	ensembl	74_37	-1	known	missense	c.437	p.S146F	0.930	NULL	pfam_Pecanex,superfamily_Trypsin-like_Pept_dom	-	no_errors	PCNXL2	HGNC	ENSG00000135749				171	0	0	145	28	16.185
TARBP1	0	genome.wustl.edu	37	1	234569180	234569180	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	234569180	234569180	A	T	SNP	TARBP1	ENST00000040877	human	ensembl	74_37	-1	novel	missense	c.2370	p.H790Q	0.982	NULL	pfam_SpoU_MeTrfase,superfamily_ARM-type_fold	-	no_errors	TARBP1	HGNC	ENSG00000059588				71	0	0	48	18	27.2727
HTR1D	0	genome.wustl.edu	37	1	23520100	23520100	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	23520100	23520100	C	A	SNP	HTR1D	ENST00000314113	human	ensembl	74_37	-1	known	missense	c.613	p.A205S	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_5HT_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_5HT1D_rcpt,prints_5HT_rcpt	-	no_errors	HTR1D	HGNC	ENSG00000179546				65	0	0	54	6	10
NID1	0	genome.wustl.edu	37	1	236189263	236189263	+	Silent	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	236189263	236189263	G	A	SNP	NID1	ENST00000264187	human	ensembl	74_37	-1	known	silent	c.1917	p.F639	0.958	superfamily_GFP,smart_G2_nidogen/fibulin_G2F,pfscan_G2_nidogen/fibulin_G2F	pfam_G2_nidogen/fibulin_G2F,pfam_LDLR_classB_rpt,pfam_Nidogen_extracell_dom,pfam_Thyroglobulin_1,pfam_EGF-like_Ca-bd_dom,superfamily_GFP,superfamily_Thyroglobulin_1,smart_Nidogen_extracell_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_G2_nidogen/fibulin_G2F,smart_Thyroglobulin_1,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDLR_classB_rpt,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thyroglobulin_1	-	no_errors	NID1	HGNC	ENSG00000116962				242	1	0.411523	180	37	17.0507
HEATR1	0	genome.wustl.edu	37	1	236766615	236766615	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	236766615	236766615	C	T	SNP	HEATR1	ENST00000366582	human	ensembl	74_37	-1	known	silent	c.204	p.P68	0.000	NULL	pfam_BP28_C_dom,pfam_U3snoRNP10,superfamily_ARM-type_fold	-	no_errors	HEATR1	HGNC	ENSG00000119285				96	0	0	91	10	9.90099
EXO1	0	genome.wustl.edu	37	1	242035442	242035442	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	242035442	242035442	T	C	SNP	EXO1	ENST00000348581	human	ensembl	74_37	+1	known	missense	c.1376	p.F459S	0.000	NULL	pfam_XPG-I_dom,pfam_XPG_DNA_repair_N,superfamily_5-3_exonuclease_C,smart_XPG_DNA_repair_N,smart_XPG-I_dom,smart_HhH2,prints_XPG/Rad2	-	no_errors	EXO1	HGNC	ENSG00000174371				52	0	0	32	12	27.2727
KIF26B	0	genome.wustl.edu	37	1	245850169	245850169	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	245850169	245850169	G	A	SNP	KIF26B	ENST00000407071	human	ensembl	74_37	+1	known	missense	c.3884	p.C1295Y	1.000	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF26B	HGNC	ENSG00000162849				41	0	0	29	4	12.1212
GRHL3	0	genome.wustl.edu	37	1	24663276	24663276	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	24663276	24663276	C	T	SNP	GRHL3	ENST00000350501	human	ensembl	74_37	+1	known	missense	c.571	p.R191C	1.000	NULL	pfam_CP2,superfamily_C2_dom	-	no_errors	GRHL3	HGNC	ENSG00000158055				154	0	0	119	23	16.1972
OR2W5	0	genome.wustl.edu	37	1	247654805	247654805	+	RNA	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	247654805	247654805	G	A	SNP	OR2W5	ENST00000522351	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.412	-	-	-	no_errors	OR2W5	HGNC	ENSG00000203664				102	0	0	64	19	22.8916
OR2L8	0	genome.wustl.edu	37	1	248112658	248112658	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	248112658	248112658	T	C	SNP	OR2L8	ENST00000357191	human	ensembl	74_37	+1	known	missense	c.499	p.Y167H	0.734	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2L8	HGNC	ENSG00000196936				166	0	0	117	17	12.6866
OR2L5	0	genome.wustl.edu	37	1	248186033	248186033	+	Silent	SNP	A	A	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	248186033	248186033	A	C	SNP	OR2L5	ENST00000355281	human	ensembl	74_37	+1	known	silent	c.784	p.R262	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2L5	HGNC	ENSG00000197454				139	0	0	117	21	15.2174
OR2M5	0	genome.wustl.edu	37	1	248309379	248309379	+	Silent	SNP	T	T	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	248309379	248309379	T	C	SNP	OR2M5	ENST00000366476	human	ensembl	74_37	+1	known	silent	c.930	p.C310	0.000	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2M5	HGNC	ENSG00000162727				84	0	0	47	18	27.6923
OR2T33	0	genome.wustl.edu	37	1	248436684	248436684	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	248436684	248436684	A	G	SNP	OR2T33	ENST00000318021	human	ensembl	74_37	-1	known	missense	c.433	p.S145P	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2T33	HGNC	ENSG00000177212				270	1	0.369004	236	21	8.17121
SRRM1	0	genome.wustl.edu	37	1	24995891	24995891	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	24995891	24995891	G	A	SNP	SRRM1	ENST00000447431	human	ensembl	74_37	+1	known	missense	c.2053	p.A685T	0.958	NULL	pfam_PWI_dom,superfamily_PWI_dom,smart_PWI_dom	-	no_errors	SRRM1	HGNC	ENSG00000133226				59	0	0	48	7	12.7273
SLC9A1	0	genome.wustl.edu	37	1	27436018	27436018	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	27436018	27436018	G	A	SNP	SLC9A1	ENST00000263980	human	ensembl	74_37	-1	known	missense	c.1064	p.A355V	1.000	pfam_Cation/H_exchanger,tigrfam_NaH_exchanger	pfam_Cation/H_exchanger,prints_Na/H_exchanger_1,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A1	HGNC	ENSG00000090020				125	0	0	98	26	20.9677
WDTC1	0	genome.wustl.edu	37	1	27614178	27614178	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	27614178	27614178	C	G	SNP	WDTC1	ENST00000319394	human	ensembl	74_37	+1	known	missense	c.305	p.A102G	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,smart_TPR_repeat,pfscan_TPR-contain_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDTC1	HGNC	ENSG00000142784				43	0	0	32	5	13.5135
PRDM16	0	genome.wustl.edu	37	1	3322154	3322154	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	3322154	3322154	C	T	SNP	PRDM16	ENST00000270722	human	ensembl	74_37	+1	known	silent	c.1128	p.A376	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Znf_BED_prd,smart_SET_dom,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM16	HGNC	ENSG00000142611				105	0	0	63	15	19.2308
RNF19B	0	genome.wustl.edu	37	1	33402626	33402626	+	Silent	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	33402626	33402626	A	G	SNP	RNF19B	ENST00000373456	human	ensembl	74_37	-1	known	silent	c.1980	p.P660	0.698	NULL	pfam_Znf_C6HC,smart_Znf_RING,smart_Znf_C6HC,pfscan_Znf_RING	-	no_errors	RNF19B	HGNC	ENSG00000116514				153	0	0	127	10	7.29927
CSMD2	0	genome.wustl.edu	37	1	34076667	34076667	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	34076667	34076667	C	T	SNP	CSMD2	ENST00000373381	human	ensembl	74_37	-1	known	missense	c.6317	p.R2106Q	1.000	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD2	HGNC	ENSG00000121904				79	0	0	54	7	11.4754
GJA4	0	genome.wustl.edu	37	1	35259929	35259929	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	35259929	35259929	C	A	SNP	GJA4	ENST00000342280	human	ensembl	74_37	+1	known	missense	c.115	p.L39M	0.266	pfam_Connexin_N,prints_Connexin	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin,prints_Connexin37	-	no_errors	GJA4	HGNC	ENSG00000187513				168	0	0	132	16	10.8108
TFAP2E	0	genome.wustl.edu	37	1	36040586	36040586	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	36040586	36040586	T	A	SNP	TFAP2E	ENST00000373235	human	ensembl	74_37	+1	known	missense	c.547	p.S183T	1.000	NULL	pfam_TF_AP2_C,prints_TF_AP2_C	-	no_errors	TFAP2E	HGNC	ENSG00000116819				120	0	0	100	26	20.6349
OSCP1	0	genome.wustl.edu	37	1	36915870	36915870	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	36915870	36915870	T	G	SNP	OSCP1	ENST00000235532	human	ensembl	74_37	-1	known	missense	c.101	p.K34T	1.000	pfam_OSCP1	pfam_OSCP1	-	no_errors	OSCP1	HGNC	ENSG00000116885				81	0	0	67	8	10.6667
SF3A3	0	genome.wustl.edu	37	1	38455654	38455654	+	RNA	SNP	C	C	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	38455654	38455654	C	A	SNP	SF3A3	ENST00000461869	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SF3A3	HGNC	ENSG00000183431				90	0	0	73	29	28.4314
RHBDL2	0	genome.wustl.edu	37	1	39358878	39358878	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	39358878	39358878	G	T	SNP	RHBDL2	ENST00000372985	human	ensembl	74_37	-1	known	missense	c.868	p.P290T	1.000	pfam_Peptidase_S54_rhomboid_dom,pirsf_Peptidase_S54_rhomboid_met	pfam_Peptidase_S54_rhomboid_dom,pirsf_Peptidase_S54_rhomboid_met	-	no_errors	RHBDL2	HGNC	ENSG00000158315				27	0	0	34	5	12.8205
MACF1	0	genome.wustl.edu	37	1	39823348	39823348	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	39823348	39823348	G	A	SNP	MACF1	ENST00000317713	human	ensembl	74_37	+1	known	missense	c.5540	p.S1847N	0.257	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_dom,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	MACF1	HGNC	ENSG00000127603				69	0	0	65	15	18.75
MACF1	0	genome.wustl.edu	37	1	39919406	39919406	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	39919406	39919406	C	T	SNP	MACF1	ENST00000317713	human	ensembl	74_37	+1	known	nonsense	c.14593	p.R4865*	0.993	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_dom,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	MACF1	HGNC	ENSG00000127603				199	0	0	161	49	23.3333
EXO5	0	genome.wustl.edu	37	1	40980785	40980785	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	40980785	40980785	G	A	SNP	EXO5	ENST00000296380	human	ensembl	74_37	+1	known	missense	c.569	p.G190E	1.000	pfam_EXOV	pfam_EXOV	-	no_errors	EXO5	HGNC	ENSG00000164002				121	0	0	106	21	16.5354
HIVEP3	0	genome.wustl.edu	37	1	41979370	41979370	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	41979370	41979370	G	T	SNP	HIVEP3	ENST00000247584	human	ensembl	74_37	-1	known	missense	c.5522	p.A1841D	0.938	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP3	HGNC	ENSG00000127124				56	0	0	32	11	25.5814
POMGNT1	0	genome.wustl.edu	37	1	46661685	46661685	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	46661685	46661685	G	A	SNP	POMGNT1	ENST00000371986	human	ensembl	74_37	-1	known	missense	c.419	p.T140M	1.000	NULL	pfam_Glyco_trans_13	-	no_errors	POMGNT1	HGNC	ENSG00000085998				98	0	0	67	15	18.2927
CYP4A11	0	genome.wustl.edu	37	1	47401267	47401267	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	47401267	47401267	T	C	SNP	CYP4A11	ENST00000371904	human	ensembl	74_37	-1	known	missense	c.563	p.H188R	0.012	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-II,prints_Cyt_P450_E_grp-IV	-	no_errors	CYP4A11	HGNC	ENSG00000187048				105	0	0	52	14	21.2121
CYP4X1	0	genome.wustl.edu	37	1	47512186	47512186	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	47512186	47512186	C	T	SNP	CYP4X1	ENST00000371901	human	ensembl	74_37	+1	known	missense	c.1121	p.T374M	0.010	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II	-	no_errors	CYP4X1	HGNC	ENSG00000186377				84	0	0	79	23	22.549
ECHDC2	0	genome.wustl.edu	37	1	53364883	53364883	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	53364883	53364883	A	G	SNP	ECHDC2	ENST00000371522	human	ensembl	74_37	-1	known	missense	c.716	p.V239A	1.000	NULL	pfam_Crotonase_core_superfam	-	no_errors	ECHDC2	HGNC	ENSG00000121310				73	0	0	64	11	14.6667
ECHDC2	0	genome.wustl.edu	37	1	53377251	53377251	+	Silent	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	53377251	53377251	G	A	SNP	ECHDC2	ENST00000371522	human	ensembl	74_37	-1	known	silent	c.264	p.G88	0.061	pfam_Crotonase_core_superfam	pfam_Crotonase_core_superfam	-	no_errors	ECHDC2	HGNC	ENSG00000121310				90	0	0	76	13	14.6067
HSPB11	0	genome.wustl.edu	37	1	54387300	54387300	+	RNA	SNP	T	T	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	54387300	54387300	T	G	SNP	HSPB11	ENST00000489675	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.011	-	-	-	no_errors	HSPB11	HGNC	ENSG00000081870				56	0	0	44	8	15.3846
C1orf177	0	genome.wustl.edu	37	1	55277501	55277501	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	55277501	55277501	A	C	SNP	C1orf177	ENST00000371273	human	ensembl	74_37	+1	known	missense	c.515	p.K172T	0.927	NULL	NULL	-	no_errors	C1orf177	HGNC	ENSG00000162398				72	0	0	50	12	19.3548
PCSK9	0	genome.wustl.edu	37	1	55512210	55512210	+	Silent	SNP	C	C	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	55512210	55512210	C	A	SNP	PCSK9	ENST00000302118	human	ensembl	74_37	+1	known	silent	c.414	p.P138	0.987	pfam_Inhibitor_I9,superfamily_Prot_inh_propept	pfam_Peptidase_S8/S53_dom,pfam_Inhibitor_I9,superfamily_Peptidase_S8/S53_dom,superfamily_Prot_inh_propept,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK9	HGNC	ENSG00000169174				103	1	0.961538	95	8	7.76699
DAB1	0	genome.wustl.edu	37	1	57489218	57489218	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	57489218	57489218	G	A	SNP	DAB1	ENST00000371231	human	ensembl	74_37	-1	known	missense	c.980	p.A327V	1.000	NULL	pfam_PTB/PI_dom,smart_PTB/PI_dom,pfscan_PTB/PI_dom	-	no_errors	DAB1	HGNC	ENSG00000173406				34	0	0	24	3	11.1111
RPL22	0	genome.wustl.edu	37	1	6246782	6246782	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	6246782	6246782	G	A	SNP	RPL22	ENST00000234875	human	ensembl	74_37	-1	known	missense	c.337	p.R113C	1.000	pfam_Ribosomal_L22e	pfam_Ribosomal_L22e	-	no_errors	RPL22	HGNC	ENSG00000116251				24	0	0	17	6	26.087
GPR153	0	genome.wustl.edu	37	1	6314182	6314182	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	6314182	6314182	C	T	SNP	GPR153	ENST00000377893	human	ensembl	74_37	-1	known	missense	c.382	p.V128M	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GCR_153/162	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPR153,prints_GCR_153/162	-	no_errors	GPR153	HGNC	ENSG00000158292				85	0	0	64	14	17.9487
PDE4B	0	genome.wustl.edu	37	1	66833502	66833502	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	66833502	66833502	G	A	SNP	PDE4B	ENST00000329654	human	ensembl	74_37	+1	known	missense	c.1508	p.R503H	1.000	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE4B	HGNC	ENSG00000184588				134	0	0	91	17	15.7407
WDR78	0	genome.wustl.edu	37	1	67306239	67306239	+	Silent	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	67306239	67306239	G	A	SNP	WDR78	ENST00000371026	human	ensembl	74_37	-1	known	silent	c.1407	p.P469	0.981	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR78	HGNC	ENSG00000152763				114	0	0	82	16	16.3265
FPGT	0	genome.wustl.edu	37	1	74670742	74670742	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	74670742	74670742	A	G	SNP	FPGT	ENST00000370898	human	ensembl	74_37	+1	known	missense	c.1050	p.I350M	0.994	pfam_Fucokinase,superfamily_Trimer_LpxA-like,pirsf_Fucose-1-phosphate_GuaTrfase	pfam_Fucokinase,superfamily_Trimer_LpxA-like,pirsf_Fucose-1-phosphate_GuaTrfase	-	no_errors	FPGT	HGNC	ENSG00000254685				95	0	0	63	8	11.2676
FPGT-TNNI3K	0	genome.wustl.edu	37	1	74835236	74835236	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	74835236	74835236	G	A	SNP	FPGT-TNNI3K	ENST00000557284	human	ensembl	74_37	+1	known	missense	c.1976	p.G659D	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Ankyrin_rpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Prot_kinase_dom,prints_Ankyrin_rpt,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	FPGT-TNNI3K	HGNC	ENSG00000259030				266	0	0	215	32	12.9555
RERE	0	genome.wustl.edu	37	1	8419854	8419854	+	Silent	SNP	T	T	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	8419854	8419854	T	C	SNP	RERE	ENST00000337907	human	ensembl	74_37	-1	known	silent	c.3588	p.R1196	0.122	pfam_Atrophin-like	pfam_Atrophin-like,pfam_BAH_dom,pfam_ELM2_dom,pfam_Znf_GATA,superfamily_Homeodomain-like,smart_BAH_dom,smart_SANT/Myb,smart_Znf_GATA,pfscan_BAH_dom,pfscan_ELM2_dom	-	no_errors	RERE	HGNC	ENSG00000142599				31	0	0	36	8	18.1818
ABCA4	0	genome.wustl.edu	37	1	94564484	94564484	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	94564484	94564484	G	A	SNP	ABCA4	ENST00000370225	human	ensembl	74_37	-1	known	missense	c.634	p.R212C	1.000	tigrfam_Rim_ABC_transpt	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,tigrfam_Rim_ABC_transpt	-	no_errors	ABCA4	HGNC	ENSG00000198691				54	0	0	47	10	17.5439
TMEM201	0	genome.wustl.edu	37	1	9655959	9655959	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	9655959	9655959	C	T	SNP	TMEM201	ENST00000340381	human	ensembl	74_37	+1	known	missense	c.125	p.T42M	0.530	NULL	pfam_DUF2448,pfam_Ima1_N	-	no_errors	TMEM201	HGNC	ENSG00000188807				54	0	0	31	5	13.8889
AGRN	0	genome.wustl.edu	37	1	980635	980635	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	980635	980635	C	T	SNP	AGRN	ENST00000379370	human	ensembl	74_37	+1	known	silent	c.2349	p.G783	0.254	NULL	pfam_Laminin_G,pfam_Agrin_NtA,pfam_Kazal_dom,pfam_EGF_laminin,pfam_SEA_dom,pfam_EG-like_dom,superfamily_TIMP-like_OB-fold,superfamily_ConA-like_lec_gl_sf,smart_FacI_MAC,smart_Fol_N,smart_Kazal_dom,smart_EG-like_dom,smart_EGF_laminin,smart_SEA_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Agrin_NtA,pfscan_SEA_dom	-	no_errors	AGRN	HGNC	ENSG00000188157				35	0	0	16	3	15.7895
HPS1	0	genome.wustl.edu	37	10	100185471	100185471	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	10	100185471	100185471	T	A	SNP	HPS1	ENST00000325103	human	ensembl	74_37	-1	known	missense	c.1162	p.S388C	0.953	NULL	NULL	-	no_errors	HPS1	HGNC	ENSG00000107521				81	0	0	51	12	19.0476
SEMA4G	0	genome.wustl.edu	37	10	102743183	102743183	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	10	102743183	102743183	C	T	SNP	SEMA4G	ENST00000210633	human	ensembl	74_37	+1	known	silent	c.1827	p.S609	0.001	smart_Ig_sub,pfscan_Ig-like_dom	pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_Ig_sub,pfscan_Semap_dom,pfscan_Ig-like_dom	-	no_errors	SEMA4G	HGNC	ENSG00000095539				41	0	0	32	7	17.9487
C10orf2	0	genome.wustl.edu	37	10	102748165	102748165	+	Silent	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	10	102748165	102748165	G	A	SNP	C10orf2	ENST00000311916	human	ensembl	74_37	+1	known	silent	c.198	p.G66	0.001	NULL	pfam_Circ_KaiC/RadA,pfam_DNA_helicase_DnaB-like_C,superfamily_P-loop_NTPase,pfscan_DNA_helicase_DnaB-like_C	-	no_errors	C10orf2	HGNC	ENSG00000107815				174	0	0	153	36	19.0476
TLX1NB	0	genome.wustl.edu	37	10	102849604	102849604	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	10	102849604	102849604	T	G	SNP	TLX1NB	ENST00000445873	human	ensembl	74_37	-1	novel	missense	c.59	p.H20P	0.130	NULL	NULL	-	no_errors	TLX1NB	HGNC	ENSG00000236311				22	0	0	23	3	11.5385
DPCD	0	genome.wustl.edu	37	10	103360573	103360573	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	10	103360573	103360573	G	A	SNP	DPCD	ENST00000370151	human	ensembl	74_37	+1	known	missense	c.224	p.G75E	0.750	NULL	NULL	-	no_errors	DPCD	HGNC	ENSG00000166171				95	0	0	82	10	10.8696
CNNM2	0	genome.wustl.edu	37	10	104679834	104679834	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	10	104679834	104679834	G	A	SNP	CNNM2	ENST00000369878	human	ensembl	74_37	+1	known	missense	c.1597	p.A533T	1.000	NULL	pfam_DUF21,superfamily_cNMP-bd-like	-	no_errors	CNNM2	HGNC	ENSG00000148842				187	0	0	133	34	20.3593
SLK	0	genome.wustl.edu	37	10	105761303	105761303	+	Silent	SNP	T	T	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	10	105761303	105761303	T	C	SNP	SLK	ENST00000369755	human	ensembl	74_37	+1	known	silent	c.966	p.D322	1.000	superfamily_Kinase-like_dom	pfam_PKK,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_UVR_dom,pfscan_Prot_kinase_dom	-	no_errors	SLK	HGNC	ENSG00000065613				41	0	0	32	11	25.5814
ITPRIP	0	genome.wustl.edu	37	10	106075805	106075805	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	10	106075805	106075805	G	A	SNP	ITPRIP	ENST00000278071	human	ensembl	74_37	-1	known	missense	c.5	p.A2V	0.871	NULL	NULL	-	no_errors	ITPRIP	HGNC	ENSG00000148841				38	0	0	14	4	22.2222
PDCD4	0	genome.wustl.edu	37	10	112647471	112647471	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	10	112647471	112647471	G	A	SNP	PDCD4	ENST00000280154	human	ensembl	74_37	+1	known	missense	c.604	p.V202M	0.998	pfam_Initiation_fac_eIF4g_MI,superfamily_ARM-type_fold,smart_Initiation_fac_eIF4g_MI	pfam_Initiation_fac_eIF4g_MI,superfamily_ARM-type_fold,smart_Initiation_fac_eIF4g_MI	-	no_errors	PDCD4	HGNC	ENSG00000150593				115	0	0	78	15	16.129
HABP2	0	genome.wustl.edu	37	10	115336940	115336940	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	10	115336940	115336940	C	T	SNP	HABP2	ENST00000537906	human	ensembl	74_37	+1	known	missense	c.329	p.A110V	0.927	NULL	NULL	-	no_errors	HABP2	HGNC	ENSG00000148702				111	0	0	87	10	10.3093
PNLIP	0	genome.wustl.edu	37	10	118306822	118306822	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	10	118306822	118306822	C	T	SNP	PNLIP	ENST00000369221	human	ensembl	74_37	+1	known	silent	c.63	p.Y21	0.000	pfam_Lipase_N,pirsf_Lipoprotein_lipase_LIPH,prints_Lipase_panc	pfam_Lipase_N,pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,smart_PLAT/LH2_dom,pirsf_Lipoprotein_lipase_LIPH,pfscan_PLAT/LH2_dom,prints_Lipase,prints_Lipase_panc	-	no_errors	PNLIP	HGNC	ENSG00000175535				93	0	0	78	17	17.8947
HTRA1	0	genome.wustl.edu	37	10	124249045	124249045	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	10	124249045	124249045	G	A	SNP	HTRA1	ENST00000368984	human	ensembl	74_37	+1	known	missense	c.680	p.R227Q	1.000	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom	pfam_Peptidase_S1,pfam_PDZ,pfam_Kazal_dom,pfam_IGFBP-like,superfamily_Trypsin-like_Pept_dom,superfamily_PDZ,smart_IGFBP-like,smart_Kazal_dom,smart_PDZ,pfscan_PDZ,prints_Peptidase_S1C	-	no_errors	HTRA1	HGNC	ENSG00000166033				120	0	0	82	26	24.0741
UROS	0	genome.wustl.edu	37	10	127477552	127477552	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	10	127477552	127477552	G	A	SNP	UROS	ENST00000368786	human	ensembl	74_37	-1	known	missense	c.683	p.T228M	0.998	pfam_4pyrrol_synth_uPrphyn_synth,superfamily_4pyrrol_synth_uPrphyn_synth	pfam_4pyrrol_synth_uPrphyn_synth,superfamily_4pyrrol_synth_uPrphyn_synth	-	no_errors	UROS	HGNC	ENSG00000188690				84	0	0	66	14	17.5
MKI67	0	genome.wustl.edu	37	10	129902596	129902596	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	10	129902596	129902596	C	T	SNP	MKI67	ENST00000368654	human	ensembl	74_37	-1	known	missense	c.7508	p.R2503Q	0.000	pfam_K167R	pfam_K167R,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	MKI67	HGNC	ENSG00000148773				291	0	0	221	48	17.8439
DNAJC1	0	genome.wustl.edu	37	10	22048374	22048374	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	10	22048374	22048374	G	A	SNP	DNAJC1	ENST00000376980	human	ensembl	74_37	-1	known	missense	c.1321	p.R441W	0.349	NULL	pfam_DnaJ_domain,pfam_SANT/Myb,superfamily_DnaJ_domain,superfamily_Homeodomain-like,smart_DnaJ_domain,smart_SANT/Myb,pfscan_Myb-like_dom,pfscan_DnaJ_domain,prints_DnaJ_domain	-	no_errors	DNAJC1	HGNC	ENSG00000136770				81	0	0	60	15	20
MASTL	0	genome.wustl.edu	37	10	27454412	27454412	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	10	27454412	27454412	C	A	SNP	MASTL	ENST00000375940	human	ensembl	74_37	+1	known	missense	c.755	p.P252H	1.000	superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MASTL	HGNC	ENSG00000120539				108	0	0	98	21	17.6471
ZNF438	0	genome.wustl.edu	37	10	31134032	31134032	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	10	31134032	31134032	G	A	SNP	ZNF438	ENST00000361310	human	ensembl	74_37	-1	known	missense	c.2345	p.A782V	0.022	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF438	HGNC	ENSG00000183621				253	1	0.393701	201	54	21.1765
CUL2	0	genome.wustl.edu	37	10	35317808	35317808	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	10	35317808	35317808	G	A	SNP	CUL2	ENST00000537177	human	ensembl	74_37	-1	known	missense	c.1604	p.A535V	1.000	pfam_Cullin_N,superfamily_Cullin_homology,smart_Cullin_homology,pfscan_Cullin_homology	pfam_Cullin_N,pfam_Cullin_neddylation_domain,superfamily_Cullin_repeat-like_dom,superfamily_Cullin_homology,smart_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL2	HGNC	ENSG00000108094				32	0	0	22	6	21.4286
FRMPD2	0	genome.wustl.edu	37	10	49446167	49446167	+	Splice_Site	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	10	49446167	49446167	C	T	SNP	FRMPD2	ENST00000374201	human	ensembl	74_37	-1	known	splice_site	c.789-1	e8-1	0.895	-	-	-	no_errors	FRMPD2	HGNC	ENSG00000170324				72	0	0	65	14	17.7215
AKR1C3	0	genome.wustl.edu	37	10	5141002	5141002	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	10	5141002	5141002	G	T	SNP	AKR1C3	ENST00000380554	human	ensembl	74_37	+1	known	missense	c.378	p.E126D	0.000	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_Aldo/keto_reductase_subgr	-	no_errors	AKR1C3	HGNC	ENSG00000196139				62	0	0	48	11	18.6441
PRKG1	0	genome.wustl.edu	37	10	53227559	53227559	+	Silent	SNP	T	T	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	10	53227559	53227559	T	C	SNP	PRKG1	ENST00000373980	human	ensembl	74_37	+1	known	silent	c.555	p.A185	0.877	pirsf_cGMP-dependent_protein_kinase,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	pirsf_cGMP-dependent_protein_kinase,pfam_Prot_kinase_dom,pfam_cNMP-bd_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,prints_cGMP_dep_kinase,prints_cAMP/cGMP_kin,pfscan_cNMP-bd_dom,pfscan_Prot_kinase_dom	-	no_errors	PRKG1	HGNC	ENSG00000185532				74	0	0	91	10	9.90099
DKK1	0	genome.wustl.edu	37	10	54074759	54074759	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	10	54074759	54074759	G	A	SNP	DKK1	ENST00000373970	human	ensembl	74_37	+1	known	missense	c.320	p.G107D	0.094	pfam_Dickkopf_N	pfam_Dickkopf_N	-	no_errors	DKK1	HGNC	ENSG00000107984				34	0	0	18	3	14.2857
FAM208B	0	genome.wustl.edu	37	10	5800957	5800957	+	Splice_Site	SNP	T	T	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	10	5800957	5800957	T	C	SNP	FAM208B	ENST00000328090	human	ensembl	74_37	+1	known	splice_site	c.6992+2	e15+2	1.000	-	-	-	no_errors	FAM208B	HGNC	ENSG00000108021				50	0	0	40	9	18.3673
IL15RA	0	genome.wustl.edu	37	10	5995102	5995102	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	10	5995102	5995102	T	G	SNP	IL15RA	ENST00000379977	human	ensembl	74_37	-1	known	missense	c.760	p.S254R	0.000	NULL	superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	IL15RA	HGNC	ENSG00000134470				152	0	0	103	15	12.7119
BICC1	0	genome.wustl.edu	37	10	60553279	60553279	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	10	60553279	60553279	G	T	SNP	BICC1	ENST00000373886	human	ensembl	74_37	+1	known	missense	c.1083	p.K361N	1.000	NULL	pfam_KH_dom_type_1,pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_KH_dom,smart_SAM,pfscan_SAM,pfscan_KH_dom_type_1	-	no_errors	BICC1	HGNC	ENSG00000122870				57	0	0	63	9	12.5
ANK3	0	genome.wustl.edu	37	10	62023723	62023723	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	10	62023723	62023723	G	A	SNP	ANK3	ENST00000280772	human	ensembl	74_37	-1	known	missense	c.569	p.S190L	0.998	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,smart_Ankyrin_rpt,smart_ZU5,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK3	HGNC	ENSG00000151150				57	0	0	41	6	12.766
TMEM26	0	genome.wustl.edu	37	10	63170171	63170171	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	10	63170171	63170171	T	C	SNP	TMEM26	ENST00000399298	human	ensembl	74_37	-1	known	missense	c.1016	p.Q339R	0.000	NULL	pfam_Transmembrane_26	-	no_errors	TMEM26	HGNC	ENSG00000196932				69	0	0	58	11	15.942
ZNF365	0	genome.wustl.edu	37	10	64136602	64136602	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	10	64136602	64136602	C	T	SNP	ZNF365	ENST00000410046	human	ensembl	74_37	+1	known	missense	c.650	p.A217V	1.000	NULL	NULL	-	no_errors	ZNF365	HGNC	ENSG00000138311				186	0	0	148	30	16.8539
PBLD	0	genome.wustl.edu	37	10	70056045	70056045	+	Silent	SNP	T	T	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	10	70056045	70056045	T	C	SNP	PBLD	ENST00000309049	human	ensembl	74_37	-1	known	silent	c.261	p.A87	0.833	pfam_Phenazine_PhzF,pirsf_Phenazine_PhzF,tigrfam_Phenazine_PhzF	pfam_Phenazine_PhzF,pirsf_Phenazine_PhzF,tigrfam_Phenazine_PhzF	-	no_errors	PBLD	HGNC	ENSG00000108187				51	0	0	29	13	30.9524
TSPAN15	0	genome.wustl.edu	37	10	71243561	71243561	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	10	71243561	71243561	G	A	SNP	TSPAN15	ENST00000373290	human	ensembl	74_37	+1	known	missense	c.211	p.V71I	0.037	pfam_Tetraspanin/Peripherin,prints_Tetraspanin	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	TSPAN15	HGNC	ENSG00000099282				89	0	0	61	25	29.0698
TYSND1	0	genome.wustl.edu	37	10	71902509	71902509	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	10	71902509	71902509	C	T	SNP	TYSND1	ENST00000287078	human	ensembl	74_37	-1	known	silent	c.1398	p.T466	0.000	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,pirsf_Pept_S1A_Tysnd1	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,pirsf_Pept_S1A_Tysnd1	-	no_errors	TYSND1	HGNC	ENSG00000156521				60	0	0	50	5	9.09091
SLC29A3	0	genome.wustl.edu	37	10	73116008	73116008	+	Splice_Site	SNP	T	T	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	10	73116008	73116008	T	C	SNP	SLC29A3	ENST00000469204	human	ensembl	74_37	+1	known	splice_site	c.NULL	NULL	0.012	-	-	-	no_errors	SLC29A3	HGNC	ENSG00000198246				82	0	0	65	4	5.7971
POLR3A	0	genome.wustl.edu	37	10	79741970	79741970	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	10	79741970	79741970	G	A	SNP	POLR3A	ENST00000372371	human	ensembl	74_37	-1	known	missense	c.3701	p.A1234V	1.000	pfam_RNA_pol_Rpb1_5	pfam_RNA_pol_Rpb1_1,pfam_RNA_pol_Rpb1_5,pfam_RNA_pol_asu,pfam_RNA_pol_Rpb1_3,pfam_RNA_pol_Rpb1_4,smart_RNA_pol_N	-	no_errors	POLR3A	HGNC	ENSG00000148606				85	0	0	64	15	18.9873
NRG3	0	genome.wustl.edu	37	10	84744984	84744984	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	10	84744984	84744984	A	G	SNP	NRG3	ENST00000404547	human	ensembl	74_37	+1	known	missense	c.1786	p.S596G	1.000	NULL	pfscan_EG-like_dom	-	no_errors	NRG3	HGNC	ENSG00000185737				268	0	0	184	36	16.3636
WAPAL	0	genome.wustl.edu	37	10	88259864	88259864	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	10	88259864	88259864	C	T	SNP	WAPAL	ENST00000298767	human	ensembl	74_37	-1	known	missense	c.1136	p.R379H	1.000	NULL	pfam_WAPL_prot,superfamily_ARM-type_fold	-	no_errors	WAPAL	HGNC	ENSG00000062650				74	0	0	72	16	18.1818
LARP4B	0	genome.wustl.edu	37	10	909765	909765	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	10	909765	909765	C	T	SNP	LARP4B	ENST00000316157	human	ensembl	74_37	-1	known	silent	c.348	p.P116	0.012	NULL	pfam_Lupus_La_RNA-bd,smart_Lupus_La_RNA-bd,pfscan_Lupus_La_RNA-bd	-	no_errors	LARP4B	HGNC	ENSG00000107929				114	0	0	84	22	20.7547
CPEB3	0	genome.wustl.edu	37	10	93999718	93999718	+	Silent	SNP	G	G	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	10	93999718	93999718	G	T	SNP	CPEB3	ENST00000265997	human	ensembl	74_37	-1	known	silent	c.390	p.V130	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CPEB3	HGNC	ENSG00000107864				42	0	0	41	6	12.766
SLC35G1	0	genome.wustl.edu	37	10	95660776	95660776	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	10	95660776	95660776	C	T	SNP	SLC35G1	ENST00000427197	human	ensembl	74_37	+1	known	silent	c.627	p.S209	0.458	NULL	pfam_DMT	-	no_errors	SLC35G1	HGNC	ENSG00000176273				64	0	0	45	9	16.6667
SORBS1	0	genome.wustl.edu	37	10	97101123	97101123	+	Silent	SNP	T	T	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	10	97101123	97101123	T	C	SNP	SORBS1	ENST00000607232	human	ensembl	74_37	-1	known	silent	c.3369	p.P1123	0.702	superfamily_SH3_domain	pfam_SH3_domain,pfam_SH3_2,pfam_Sorb,superfamily_SH3_domain,smart_Sorb,smart_SH3_domain,pfscan_Sorb,pfscan_SH3_domain,prints_p67phox,prints_SH3_domain	-	no_errors	SORBS1	HGNC	ENSG00000095637				151	0	0	101	25	19.8413
TM9SF3	0	genome.wustl.edu	37	10	98287262	98287262	+	RNA	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	10	98287262	98287262	G	A	SNP	TM9SF3	ENST00000485093	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TM9SF3	HGNC	ENSG00000077147				49	0	0	34	5	12.8205
PI4K2A	0	genome.wustl.edu	37	10	99361742	99361742	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	10	99361742	99361742	G	A	SNP	PI4K2A	ENST00000555577	human	ensembl	74_37	+1	known	missense	c.340	p.A114T	0.633	NULL	pfam_PI3/4_kinase_cat_dom	-	no_errors	PI4K2A	HGNC	ENSG00000155252				27	0	0	31	9	22.5
PGR	0	genome.wustl.edu	37	11	100909916	100909916	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	11	100909916	100909916	T	G	SNP	PGR	ENST00000325455	human	ensembl	74_37	-1	known	missense	c.2733	p.E911D	1.000	superfamily_Nucl_hormone_rcpt_ligand-bd	pfam_Progest_rcpt,pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Progest_rcpt,prints_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt	-	no_errors	PGR	HGNC	ENSG00000082175				60	0	0	51	13	20.3125
TRPC6	0	genome.wustl.edu	37	11	101375456	101375456	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	11	101375456	101375456	G	A	SNP	TRPC6	ENST00000344327	human	ensembl	74_37	-1	known	nonsense	c.244	p.R82*	1.000	tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,pfam_PKD1_2_channel,superfamily_Ankyrin_rpt-contain_dom,superfamily_ARM-type_fold,smart_Ankyrin_rpt,prints_TRPC6_channel,prints_TRPC_channel,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,tigrfam_TRP_channel	-	no_errors	TRPC6	HGNC	ENSG00000137672				177	0	0	136	30	18.0723
SIK2	0	genome.wustl.edu	37	11	111594498	111594498	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	11	111594498	111594498	G	A	SNP	SIK2	ENST00000304987	human	ensembl	74_37	+1	known	missense	c.2426	p.R809Q	0.004	pirsf_Ser/Thr_kinase_SIK1/2	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ser/Thr_kinase_SIK1/2,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	SIK2	HGNC	ENSG00000170145				243	0	0	173	40	18.7793
DIXDC1	0	genome.wustl.edu	37	11	111866267	111866267	+	Silent	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	11	111866267	111866267	G	A	SNP	DIXDC1	ENST00000440460	human	ensembl	74_37	+1	known	silent	c.1665	p.T555	0.412	NULL	pfam_DIX,pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_DIX,pfscan_CH-domain,pfscan_DIX	-	no_errors	DIXDC1	HGNC	ENSG00000150764				106	0	0	90	17	15.8879
HTR3A	0	genome.wustl.edu	37	11	113857293	113857293	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	11	113857293	113857293	C	A	SNP	HTR3A	ENST00000355556	human	ensembl	74_37	+1	known	missense	c.777	p.S259R	0.999	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_5HT3_rcpt_A,prints_5HT3_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	HTR3A	HGNC	ENSG00000166736				100	0	0	115	11	8.73016
CEP164	0	genome.wustl.edu	37	11	117280458	117280458	+	Silent	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	11	117280458	117280458	G	A	SNP	CEP164	ENST00000278935	human	ensembl	74_37	+1	known	silent	c.3873	p.P1291	0.000	NULL	superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom	-	no_errors	CEP164	HGNC	ENSG00000110274				312	0	0	212	52	19.697
KMT2A	0	genome.wustl.edu	37	11	118373724	118373724	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	11	118373724	118373724	C	A	SNP	KMT2A	ENST00000389506	human	ensembl	74_37	+1	known	missense	c.7108	p.L2370I	0.790	pirsf_MeTrfase_trithorax	pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_Bromodomain,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pirsf_MeTrfase_trithorax,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC,pfscan_Bromodomain	-	no_errors	KMT2A	HGNC	ENSG00000118058				85	0	0	71	18	20.2247
HYOU1	0	genome.wustl.edu	37	11	118919524	118919524	+	Silent	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	11	118919524	118919524	G	A	SNP	HYOU1	ENST00000404233	human	ensembl	74_37	-1	known	silent	c.2067	p.P689	0.022	pfam_Hsp_70_fam	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HYOU1	HGNC	ENSG00000149428				83	0	0	65	19	22.619
VPS11	0	genome.wustl.edu	37	11	118942339	118942339	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	11	118942339	118942339	G	A	SNP	VPS11	ENST00000300793	human	ensembl	74_37	+1	known	missense	c.667	p.V223M	0.279	superfamily_WD40_repeat_dom,pirsf_VPS11	pfam_VPS11_C,pfam_Clathrin_H-chain/VPS_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Znf_RING,pirsf_VPS11,pfscan_Znf_RING	-	no_errors	VPS11	HGNC	ENSG00000160695				62	0	0	57	3	5
C2CD2L	0	genome.wustl.edu	37	11	118983195	118983195	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	11	118983195	118983195	A	G	SNP	C2CD2L	ENST00000336702	human	ensembl	74_37	+1	known	missense	c.1088	p.E363G	0.835	superfamily_C2_dom	superfamily_C2_dom	-	no_errors	C2CD2L	HGNC	ENSG00000172375				107	0	0	100	14	12.2807
PVRL1	0	genome.wustl.edu	37	11	119535676	119535676	+	Silent	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	11	119535676	119535676	G	A	SNP	PVRL1	ENST00000264025	human	ensembl	74_37	-1	known	silent	c.1335	p.G445	0.887	NULL	pfam_CD80_C2-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	PVRL1	HGNC	ENSG00000110400				50	0	0	31	6	16.2162
PVRL1	0	genome.wustl.edu	37	11	119549297	119549297	+	Silent	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	11	119549297	119549297	G	A	SNP	PVRL1	ENST00000264025	human	ensembl	74_37	-1	known	silent	c.258	p.G86	0.024	pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_CD80_C2-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	PVRL1	HGNC	ENSG00000110400				51	0	0	29	9	23.6842
OR6M1	0	genome.wustl.edu	37	11	123676666	123676666	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	11	123676666	123676666	G	A	SNP	OR6M1	ENST00000309154	human	ensembl	74_37	-1	known	missense	c.392	p.T131M	0.017	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6M1	HGNC	ENSG00000196099				54	0	0	43	11	20.3704
OR8B8	0	genome.wustl.edu	37	11	124310482	124310482	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	11	124310482	124310482	G	A	SNP	OR8B8	ENST00000328064	human	ensembl	74_37	-1	known	missense	c.500	p.T167I	0.831	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8B8	HGNC	ENSG00000197125				88	0	0	49	13	20.9677
SRPR	0	genome.wustl.edu	37	11	126136758	126136758	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	11	126136758	126136758	C	T	SNP	SRPR	ENST00000332118	human	ensembl	74_37	-1	known	missense	c.586	p.V196M	0.066	pfam_Sig_recog_particle_rcpt_asu_N	pfam_Sig_recog_particle_rcpt_asu_N,pfam_SRP54_GTPase_dom,pfam_ArgK,pfam_CobQ/CobB/MinD/ParA_Nub-bd_dom,pfam_Signal_recog_particl_SRP54_hlx,superfamily_Longin-like_dom,superfamily_P-loop_NTPase,superfamily_Signal_recog_particl_SRP54_hlx,smart_Signal_recog_particl_SRP54_hlx,smart_AAA+_ATPase,smart_SRP54_GTPase_dom	-	no_errors	SRPR	HGNC	ENSG00000182934				119	0	0	117	29	19.863
FOXRED1	0	genome.wustl.edu	37	11	126146096	126146096	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	11	126146096	126146096	C	A	SNP	FOXRED1	ENST00000263578	human	ensembl	74_37	+1	known	missense	c.953	p.P318H	1.000	pfam_FAD-dep_OxRdtase	pfam_FAD-dep_OxRdtase	-	no_errors	FOXRED1	HGNC	ENSG00000110074				22	0	0	18	4	18.1818
KIRREL3	0	genome.wustl.edu	37	11	126314938	126314938	+	Silent	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	11	126314938	126314938	G	A	SNP	KIRREL3	ENST00000525144	human	ensembl	74_37	-1	known	silent	c.1188	p.Y396	0.970	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	KIRREL3	HGNC	ENSG00000149571				85	0	0	84	13	13.4021
NFRKB	0	genome.wustl.edu	37	11	129739602	129739602	+	Silent	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	11	129739602	129739602	G	A	SNP	NFRKB	ENST00000524794	human	ensembl	74_37	-1	known	silent	c.3393	p.T1131	0.002	NULL	NULL	-	no_errors	NFRKB	HGNC	ENSG00000170322				191	0	0	134	29	17.7914
USH1C	0	genome.wustl.edu	37	11	17519712	17519712	+	Silent	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	11	17519712	17519712	G	A	SNP	USH1C	ENST00000005226	human	ensembl	74_37	-1	known	silent	c.2487	p.G829	0.987	superfamily_PDZ,smart_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	USH1C	HGNC	ENSG00000006611				157	0	0	150	28	15.7303
MRGPRX3	0	genome.wustl.edu	37	11	18159640	18159640	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	11	18159640	18159640	C	T	SNP	MRGPRX3	ENST00000396275	human	ensembl	74_37	+1	known	silent	c.891	p.D297	0.995	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	MRGPRX3	HGNC	ENSG00000179826				106	0	0	73	20	21.5054
MRGPRX1	0	genome.wustl.edu	37	11	18955384	18955384	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	11	18955384	18955384	C	T	SNP	MRGPRX1	ENST00000302797	human	ensembl	74_37	-1	known	silent	c.948	p.S316	0.000	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	MRGPRX1	HGNC	ENSG00000170255				87	0	0	65	14	17.7215
MRGPRX1	0	genome.wustl.edu	37	11	18956154	18956154	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	11	18956154	18956154	C	T	SNP	MRGPRX1	ENST00000302797	human	ensembl	74_37	-1	known	missense	c.178	p.A60T	0.008	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	MRGPRX1	HGNC	ENSG00000170255				173	1	0.574713	141	36	20.339
ABTB2	0	genome.wustl.edu	37	11	34218969	34218969	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	11	34218969	34218969	C	T	SNP	ABTB2	ENST00000435224	human	ensembl	74_37	-1	known	missense	c.1147	p.A383T	1.000	NULL	pfam_BTB_POZ,pfam_Ankyrin_rpt,superfamily_Histone-fold,superfamily_BTB/POZ_fold,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_BTB/POZ-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_BTB/POZ-like	-	no_errors	ABTB2	HGNC	ENSG00000166016				79	0	0	68	11	13.9241
PRR5L	0	genome.wustl.edu	37	11	36459025	36459025	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	11	36459025	36459025	A	G	SNP	PRR5L	ENST00000378867	human	ensembl	74_37	+1	known	missense	c.443	p.Q148R	1.000	pfam_HbrB	pfam_HbrB	-	no_errors	PRR5L	HGNC	ENSG00000135362				138	0	0	105	24	18.6047
RRM1	0	genome.wustl.edu	37	11	4144429	4144429	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	11	4144429	4144429	C	T	SNP	RRM1	ENST00000300738	human	ensembl	74_37	+1	known	missense	c.1135	p.R379C	1.000	pfam_RNR_lg_C,tigrfam_NrdE_NrdA	pfam_RNR_lg_C,pfam_RNR_lsu_N,pfam_ATP-cone,superfamily_RNR_R1-su_N,pfscan_ATP-cone,prints_RNR_lg_C,tigrfam_NrdE_NrdA	-	no_errors	RRM1	HGNC	ENSG00000167325				76	0	0	70	5	6.66667
ANO9	0	genome.wustl.edu	37	11	418560	418560	+	Silent	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	11	418560	418560	G	A	SNP	ANO9	ENST00000332826	human	ensembl	74_37	-1	known	silent	c.2160	p.A720	0.011	pfam_Anoctamin	pfam_Anoctamin	-	no_errors	ANO9	HGNC	ENSG00000185101				122	0	0	97	18	15.6522
OR52B4	0	genome.wustl.edu	37	11	4389408	4389408	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	11	4389408	4389408	C	T	SNP	OR52B4	ENST00000408920	human	ensembl	74_37	-1	known	missense	c.118	p.A40T	0.000	pfam_7TM_GPCR_olfarory/Srsx,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR52B4	HGNC	ENSG00000221996				53	0	0	41	10	19.6078
CHST1	0	genome.wustl.edu	37	11	45672102	45672102	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	11	45672102	45672102	C	T	SNP	CHST1	ENST00000308064	human	ensembl	74_37	-1	known	silent	c.372	p.L124	1.000	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,pirsf_Carbohydrate_sulfotransferase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,pirsf_Carbohydrate_sulfotransferase	-	no_errors	CHST1	HGNC	ENSG00000175264				145	0	0	125	21	14.3836
CHRM4	0	genome.wustl.edu	37	11	46406884	46406884	+	Silent	SNP	G	G	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	11	46406884	46406884	G	T	SNP	CHRM4	ENST00000433765	human	ensembl	74_37	-1	known	silent	c.1224	p.A408	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Musac_Ach_rcpt,prints_GPCR_Rhodpsn,prints_Musac_Ach_M4_rcpt	-	no_errors	CHRM4	HGNC	ENSG00000180720				54	0	0	27	11	28.9474
SPI1	0	genome.wustl.edu	37	11	47399893	47399893	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	11	47399893	47399893	C	T	SNP	SPI1	ENST00000227163	human	ensembl	74_37	-1	known	silent	c.12	p.A4	1.000	NULL	pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	SPI1	HGNC	ENSG00000066336				32	0	0	31	4	11.4286
RNH1	0	genome.wustl.edu	37	11	494914	494914	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	11	494914	494914	G	A	SNP	RNH1	ENST00000354420	human	ensembl	74_37	-1	known	missense	c.1267	p.R423W	0.000	smart_Leu-rich_rpt_RNase_inh_sub-typ	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_RNase_inh_sub-typ,smart_Leu-rich_rpt_Cys-con_subtyp	-	no_errors	RNH1	HGNC	ENSG00000023191				26	0	0	13	7	35
RNH1	0	genome.wustl.edu	37	11	498841	498841	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	11	498841	498841	C	A	SNP	RNH1	ENST00000354420	human	ensembl	74_37	-1	known	missense	c.707	p.S236I	0.002	smart_Leu-rich_rpt_RNase_inh_sub-typ,smart_Leu-rich_rpt_Cys-con_subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_RNase_inh_sub-typ,smart_Leu-rich_rpt_Cys-con_subtyp	-	no_errors	RNH1	HGNC	ENSG00000023191				36	0	0	33	4	10.8108
OR10AG1	0	genome.wustl.edu	37	11	55735092	55735092	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	11	55735092	55735092	A	G	SNP	OR10AG1	ENST00000312345	human	ensembl	74_37	-1	known	missense	c.848	p.L283P	1.000	prints_Olfact_rcpt,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10AG1	HGNC	ENSG00000174970				81	0	0	54	15	21.7391
TRIM6	0	genome.wustl.edu	37	11	5632556	5632556	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	11	5632556	5632556	G	A	SNP	TRIM6	ENST00000380097	human	ensembl	74_37	+1	known	missense	c.1535	p.R512H	0.387	superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM6	HGNC	ENSG00000121236				162	0	0	124	19	13.2867
SSRP1	0	genome.wustl.edu	37	11	57099223	57099223	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	11	57099223	57099223	C	T	SNP	SSRP1	ENST00000278412	human	ensembl	74_37	-1	known	missense	c.1142	p.R381H	1.000	pfam_SSRP1_dom,pfam_DUF1747,prints_SSrcognition	pfam_SSRP1_dom,pfam_DUF1747,pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom,prints_SSrcognition	-	no_errors	SSRP1	HGNC	ENSG00000149136				99	0	0	88	11	11.1111
SSRP1	0	genome.wustl.edu	37	11	57100495	57100495	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	11	57100495	57100495	A	G	SNP	SSRP1	ENST00000278412	human	ensembl	74_37	-1	known	missense	c.475	p.S159P	1.000	NULL	pfam_SSRP1_dom,pfam_DUF1747,pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom,prints_SSrcognition	-	no_errors	SSRP1	HGNC	ENSG00000149136				191	0	0	128	30	18.9873
OR52E6	0	genome.wustl.edu	37	11	5862873	5862873	+	Silent	SNP	G	G	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	11	5862873	5862873	G	T	SNP	OR52E6	ENST00000379946	human	ensembl	74_37	-1	known	silent	c.267	p.G89	0.013	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR52E6	HGNC	ENSG00000205409				194	0	0	163	30	15.544
OR52E6	0	genome.wustl.edu	37	11	5862874	5862874	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	11	5862874	5862874	C	T	SNP	OR52E6	ENST00000379946	human	ensembl	74_37	-1	known	missense	c.266	p.G89D	0.007	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR52E6	HGNC	ENSG00000205409				195	0	0	164	30	15.4639
TCN1	0	genome.wustl.edu	37	11	59622240	59622240	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	11	59622240	59622240	C	T	SNP	TCN1	ENST00000257264	human	ensembl	74_37	-1	known	missense	c.1006	p.V336I	0.558	NULL	pfam_Cbl-bd_transpt_euk	-	no_errors	TCN1	HGNC	ENSG00000134827				122	0	0	98	17	14.7826
MS4A12	0	genome.wustl.edu	37	11	60269478	60269478	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	11	60269478	60269478	C	G	SNP	MS4A12	ENST00000016913	human	ensembl	74_37	+1	known	missense	c.437	p.S146C	0.000	pfam_CD20-like	pfam_CD20-like	-	no_errors	MS4A12	HGNC	ENSG00000071203				199	0	0	146	35	19.337
DDB1	0	genome.wustl.edu	37	11	61097046	61097046	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	11	61097046	61097046	C	T	SNP	DDB1	ENST00000301764	human	ensembl	74_37	-1	known	missense	c.338	p.G113D	1.000	NULL	pfam_Cleavage/polyA-sp_fac_asu_C	-	no_errors	DDB1	HGNC	ENSG00000167986				36	0	0	23	10	30.303
DAGLA	0	genome.wustl.edu	37	11	61488196	61488196	+	Silent	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	11	61488196	61488196	G	A	SNP	DAGLA	ENST00000257215	human	ensembl	74_37	+1	known	silent	c.141	p.P47	0.082	NULL	pfam_Lipase_3	-	no_errors	DAGLA	HGNC	ENSG00000134780				76	0	0	59	13	18.0556
INCENP	0	genome.wustl.edu	37	11	61897808	61897808	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	11	61897808	61897808	C	A	SNP	INCENP	ENST00000394818	human	ensembl	74_37	+1	known	missense	c.809	p.P270Q	0.002	NULL	pfam_INCENP_N,pfam_Inner_centromere_prot_ARK-bd	-	no_errors	INCENP	HGNC	ENSG00000149503				126	0	0	84	35	29.4118
FAM160A2	0	genome.wustl.edu	37	11	6239808	6239808	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	11	6239808	6239808	C	T	SNP	FAM160A2	ENST00000265978	human	ensembl	74_37	-1	known	missense	c.1457	p.G486E	1.000	NULL	pfam_RetinoicA-induced_16-like	-	no_errors	FAM160A2	HGNC	ENSG00000051009				180	0	0	131	26	16.5605
TAF6L	0	genome.wustl.edu	37	11	62554065	62554065	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	11	62554065	62554065	G	A	SNP	TAF6L	ENST00000294168	human	ensembl	74_37	+1	known	missense	c.1166	p.C389Y	0.001	NULL	pfam_TAF_TATA-bd,pfam_DUF1546,superfamily_Histone-fold,smart_TAF_TATA-bd	-	no_errors	TAF6L	HGNC	ENSG00000162227				36	0	0	19	4	17.3913
MEN1	0	genome.wustl.edu	37	11	64575097	64575097	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	11	64575097	64575097	G	A	SNP	MEN1	ENST00000337652	human	ensembl	74_37	-1	known	missense	c.725	p.A242V	1.000	pfam_Menin	pfam_Menin	-	no_errors	MEN1	HGNC	ENSG00000133895				133	0	0	118	8	6.34921
ATG2A	0	genome.wustl.edu	37	11	64676743	64676743	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	11	64676743	64676743	T	G	SNP	ATG2A	ENST00000421419	human	ensembl	74_37	-1	known	missense	c.2204	p.Q735P	1.000	NULL	pfam_Autophagy-rel_C	-	no_errors	ATG2A	HGNC	ENSG00000110046				65	0	0	59	8	11.9403
KLC2	0	genome.wustl.edu	37	11	66033586	66033586	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	11	66033586	66033586	G	A	SNP	KLC2	ENST00000316924	human	ensembl	74_37	+1	known	missense	c.1625	p.R542H	1.000	NULL	pfam_Rabaptin_Rab5-bd_dom,pfam_TPR_1,smart_TPR_repeat,prints_Kinesin_light,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	KLC2	HGNC	ENSG00000174996				62	0	0	44	9	16.9811
CCDC87	0	genome.wustl.edu	37	11	66359936	66359936	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	11	66359936	66359936	C	A	SNP	CCDC87	ENST00000333861	human	ensembl	74_37	-1	known	missense	c.551	p.R184M	0.002	NULL	pfam_MAP65_Ase1_PRC1	-	no_errors	CCDC87	HGNC	ENSG00000182791				57	0	0	41	15	26.7857
RBM4	0	genome.wustl.edu	37	11	66411194	66411194	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	11	66411194	66411194	G	A	SNP	RBM4	ENST00000310092	human	ensembl	74_37	+1	known	missense	c.686	p.R229Q	1.000	NULL	pfam_RRM_dom,pfam_Znf_CCHC,smart_RRM_dom,smart_Znf_CCHC,pfscan_Znf_CCHC,pfscan_RRM_dom	-	no_errors	RBM4	HGNC	ENSG00000173933				87	0	0	62	16	20.5128
PITPNM1	0	genome.wustl.edu	37	11	67265635	67265635	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	11	67265635	67265635	C	T	SNP	PITPNM1	ENST00000356404	human	ensembl	74_37	-1	known	missense	c.1643	p.R548H	1.000	NULL	pfam_PI_transfer,pfam_DDHD,pfam_LNS2,superfamily_HAD-like_dom,smart_LNS2,pfscan_DDHD,prints_PI_transfer	-	no_errors	PITPNM1	HGNC	ENSG00000110697				76	0	0	54	3	5.26316
CHKA	0	genome.wustl.edu	37	11	67821508	67821508	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	11	67821508	67821508	C	T	SNP	CHKA	ENST00000265689	human	ensembl	74_37	-1	known	missense	c.1321	p.A441T	0.999	superfamily_Kinase-like_dom	pfam_Aminoglycoside_PTrfase,pfam_DUF227,superfamily_Kinase-like_dom	-	no_errors	CHKA	HGNC	ENSG00000110721				29	0	0	27	5	15.625
CPT1A	0	genome.wustl.edu	37	11	68562328	68562328	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	11	68562328	68562328	C	T	SNP	CPT1A	ENST00000265641	human	ensembl	74_37	-1	known	missense	c.823	p.A275T	0.991	pfam_Carn_acyl_trans	pfam_Carn_acyl_trans	-	no_errors	CPT1A	HGNC	ENSG00000110090				143	0	0	103	17	14.1667
OR10A4	0	genome.wustl.edu	37	11	6898314	6898314	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	11	6898314	6898314	G	A	SNP	OR10A4	ENST00000379829	human	ensembl	74_37	+1	known	missense	c.436	p.A146T	0.979	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10A4	HGNC	ENSG00000170782				85	0	0	73	15	17.0455
ZNF214	0	genome.wustl.edu	37	11	7021712	7021712	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	11	7021712	7021712	A	C	SNP	ZNF214	ENST00000278314	human	ensembl	74_37	-1	known	missense	c.1202	p.L401R	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF214	HGNC	ENSG00000149050				144	0	0	89	19	17.5926
RBMXL2	0	genome.wustl.edu	37	11	7111338	7111338	+	Silent	SNP	T	T	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	11	7111338	7111338	T	C	SNP	RBMXL2	ENST00000306904	human	ensembl	74_37	+1	known	silent	c.987	p.S329	0.994	NULL	pfam_RRM_dom,pfam_RBM1CTR,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBMXL2	HGNC	ENSG00000170748				39	0	0	37	3	7.5
FCHSD2	0	genome.wustl.edu	37	11	72553749	72553749	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	11	72553749	72553749	G	A	SNP	FCHSD2	ENST00000409418	human	ensembl	74_37	-1	known	missense	c.1843	p.R615C	0.923	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain	pfam_SH3_domain,pfam_FCH_dom,pfam_SH3_2,superfamily_SH3_domain,smart_FCH_dom,smart_SH3_domain,pfscan_FCH_dom,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	FCHSD2	HGNC	ENSG00000137478				135	0	0	109	16	12.8
RELT	0	genome.wustl.edu	37	11	73106270	73106270	+	Silent	SNP	G	G	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	11	73106270	73106270	G	T	SNP	RELT	ENST00000064780	human	ensembl	74_37	+1	known	silent	c.1185	p.L395	0.939	NULL	pfam_TNF_rcpt_RELT,prints_TNFR_19-like	-	no_errors	RELT	HGNC	ENSG00000054967				81	0	0	38	17	30.9091
XRRA1	0	genome.wustl.edu	37	11	74562191	74562191	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	11	74562191	74562191	C	T	SNP	XRRA1	ENST00000340360	human	ensembl	74_37	-1	known	missense	c.1298	p.R433Q	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	XRRA1	HGNC	ENSG00000166435				72	0	0	43	9	17.3077
NEU3	0	genome.wustl.edu	37	11	74716692	74716692	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	11	74716692	74716692	G	A	SNP	NEU3	ENST00000294064	human	ensembl	74_37	+1	known	missense	c.541	p.V181I	1.000	superfamily_Sialidases	superfamily_Sialidases	-	no_errors	NEU3	HGNC	ENSG00000162139				151	0	0	99	25	20.1613
RSF1	0	genome.wustl.edu	37	11	77383228	77383228	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	11	77383228	77383228	G	A	SNP	RSF1	ENST00000308488	human	ensembl	74_37	-1	known	nonsense	c.3610	p.R1204*	0.994	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	RSF1	HGNC	ENSG00000048649				119	0	0	106	18	14.5161
DLG2	0	genome.wustl.edu	37	11	83691553	83691553	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	11	83691553	83691553	A	G	SNP	DLG2	ENST00000376104	human	ensembl	74_37	-1	known	missense	c.1052	p.L351P	0.929	pfam_PDZ,superfamily_PDZ,smart_PDZ,pirsf_M-assoc_guanylate_kinase,pfscan_PDZ	pfam_PDZ,pfam_GK/Ca_channel_bsu,pfam_MAGUK_PEST_N,pfam_PDZ_assoc,pfam_L27_1,pfam_SH3_2,pfam_SH3_domain,superfamily_P-loop_NTPase,superfamily_SH3_domain,superfamily_PDZ,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pirsf_M-assoc_guanylate_kinase,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like	-	no_errors	DLG2	HGNC	ENSG00000150672				114	0	0	90	20	18.1818
DLG2	0	genome.wustl.edu	37	11	83877898	83877898	+	RNA	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	11	83877898	83877898	C	T	SNP	DLG2	ENST00000524941	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	DLG2	HGNC	ENSG00000150672				42	0	0	32	5	13.5135
DLG2	0	genome.wustl.edu	37	11	84028016	84028016	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	11	84028016	84028016	C	T	SNP	DLG2	ENST00000280241	human	ensembl	74_37	-1	known	missense	c.173	p.G58D	0.956	pfam_MAGUK_PEST_N,pirsf_M-assoc_guanylate_kinase	pfam_PDZ,pfam_GK/Ca_channel_bsu,pfam_PDZ_assoc,pfam_MAGUK_PEST_N,pfam_SH3_2,pfam_SH3_domain,superfamily_P-loop_NTPase,superfamily_SH3_domain,superfamily_PDZ,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pirsf_M-assoc_guanylate_kinase,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like	-	no_errors	DLG2	HGNC	ENSG00000150672				219	0	0	181	34	15.814
GRM5	0	genome.wustl.edu	37	11	88583270	88583270	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	11	88583270	88583270	C	A	SNP	GRM5	ENST00000305447	human	ensembl	74_37	-1	known	missense	c.715	p.G239W	1.000	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_Metabotropic_Glu_rcpt_Homer-bd,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,prints_GPCR_3_mtglu_rcpt_5,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_1,pfscan_GPCR_3_C	-	no_errors	GRM5	HGNC	ENSG00000168959				30	0	0	24	9	27.2727
NAALAD2	0	genome.wustl.edu	37	11	89896482	89896482	+	Silent	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	11	89896482	89896482	G	A	SNP	NAALAD2	ENST00000534061	human	ensembl	74_37	+1	known	silent	c.1080	p.R360	1.000	pfam_Peptidase_M28	pfam_TFR-like_dimer_dom,pfam_Peptidase_M28,pfam_Protease-assoc_domain,superfamily_TFR-like_dimer_dom	-	no_errors	NAALAD2	HGNC	ENSG00000077616				185	0	0	130	20	13.3333
FAT3	0	genome.wustl.edu	37	11	92564790	92564790	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	11	92564790	92564790	A	G	SNP	FAT3	ENST00000298047	human	ensembl	74_37	+1	known	missense	c.9484	p.I3162V	0.904	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323				37	0	0	28	4	12.5
PIWIL4	0	genome.wustl.edu	37	11	94328536	94328536	+	Silent	SNP	T	T	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	11	94328536	94328536	T	C	SNP	PIWIL4	ENST00000299001	human	ensembl	74_37	+1	known	silent	c.1212	p.R404	0.000	pfam_PAZ_dom,superfamily_RNaseH-like_dom,superfamily_PAZ_dom,smart_PAZ_dom	pfam_Piwi,pfam_PAZ_dom,superfamily_RNaseH-like_dom,superfamily_PAZ_dom,smart_PAZ_dom,smart_Piwi,pfscan_PAZ_dom,pfscan_Piwi	-	no_errors	PIWIL4	HGNC	ENSG00000134627				117	0	0	113	12	9.6
IPO7	0	genome.wustl.edu	37	11	9451349	9451349	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	11	9451349	9451349	A	G	SNP	IPO7	ENST00000379719	human	ensembl	74_37	+1	known	missense	c.1720	p.T574A	1.000	superfamily_ARM-type_fold	pfam_Importin-beta_N,pfam_Cse1,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	IPO7	HGNC	ENSG00000205339				47	0	0	55	7	11.2903
UHRF1BP1L	0	genome.wustl.edu	37	12	100444003	100444003	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	12	100444003	100444003	T	C	SNP	UHRF1BP1L	ENST00000279907	human	ensembl	74_37	-1	known	missense	c.3661	p.T1221A	0.893	NULL	NULL	-	no_errors	UHRF1BP1L	HGNC	ENSG00000111647				26	0	0	20	3	13.0435
STAB2	0	genome.wustl.edu	37	12	104089412	104089412	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	12	104089412	104089412	C	T	SNP	STAB2	ENST00000388887	human	ensembl	74_37	+1	known	missense	c.3460	p.R1154W	1.000	pfam_FAS1_domain,superfamily_FAS1_domain,superfamily_Growth_fac_rcpt_N_dom,pfscan_FAS1_domain	pfam_FAS1_domain,pfam_Link,superfamily_C-type_lectin_fold,superfamily_FAS1_domain,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_EGF_laminin,smart_EGF-like_Ca-bd_dom,smart_FAS1_domain,smart_Link,pfscan_EG-like_dom,pfscan_FAS1_domain,pfscan_Link	-	no_errors	STAB2	HGNC	ENSG00000136011				141	0	0	93	16	14.6789
STAB2	0	genome.wustl.edu	37	12	104149134	104149134	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	12	104149134	104149134	C	A	SNP	STAB2	ENST00000388887	human	ensembl	74_37	+1	known	missense	c.6769	p.P2257T	1.000	pfam_Link,superfamily_C-type_lectin_fold,smart_Link,pfscan_Link	pfam_FAS1_domain,pfam_Link,superfamily_C-type_lectin_fold,superfamily_FAS1_domain,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_EGF_laminin,smart_EGF-like_Ca-bd_dom,smart_FAS1_domain,smart_Link,pfscan_EG-like_dom,pfscan_FAS1_domain,pfscan_Link	-	no_errors	STAB2	HGNC	ENSG00000136011				159	0	0	121	26	17.6871
WSCD2	0	genome.wustl.edu	37	12	108620779	108620779	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	12	108620779	108620779	G	A	SNP	WSCD2	ENST00000261400	human	ensembl	74_37	+1	known	missense	c.817	p.A273T	1.000	pfam_WSC_carb-bd,smart_WSC_carb-bd_subgr,pfscan_WSC_carb-bd	pfam_WSC_carb-bd,superfamily_P-loop_NTPase,smart_WSC_carb-bd_subgr,pfscan_WSC_carb-bd	-	no_errors	WSCD2	HGNC	ENSG00000075035				79	0	0	74	18	19.5652
WSCD2	0	genome.wustl.edu	37	12	108634185	108634185	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	12	108634185	108634185	C	T	SNP	WSCD2	ENST00000261400	human	ensembl	74_37	+1	known	silent	c.1209	p.S403	1.000	superfamily_P-loop_NTPase	pfam_WSC_carb-bd,superfamily_P-loop_NTPase,smart_WSC_carb-bd_subgr,pfscan_WSC_carb-bd	-	no_errors	WSCD2	HGNC	ENSG00000075035				273	0	0	238	30	11.194
DTX1	0	genome.wustl.edu	37	12	113515234	113515234	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	12	113515234	113515234	A	G	SNP	DTX1	ENST00000257600	human	ensembl	74_37	+1	known	missense	c.265	p.M89V	1.000	pfam_WWE-dom,smart_WWE-dom_subgr,pfscan_WWE-dom	pfam_WWE-dom,smart_WWE-dom_subgr,smart_Znf_RING,pfscan_WWE-dom,pfscan_Znf_RING	-	no_errors	DTX1	HGNC	ENSG00000135144				58	0	0	46	11	19.2982
TBX5	0	genome.wustl.edu	37	12	114841708	114841708	+	RNA	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	12	114841708	114841708	C	T	SNP	TBX5	ENST00000552726	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.271	-	-	-	no_errors	TBX5	HGNC	ENSG00000089225				48	0	0	34	5	12.8205
MED13L	0	genome.wustl.edu	37	12	116446342	116446342	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	12	116446342	116446342	G	A	SNP	MED13L	ENST00000281928	human	ensembl	74_37	-1	known	missense	c.1876	p.P626S	0.058	NULL	pfam_Mediator_Med13,pfam_Mediator_Med13_N_met/fun	-	no_errors	MED13L	HGNC	ENSG00000123066				46	0	0	27	2	6.89655
SETD8	0	genome.wustl.edu	37	12	123892235	123892235	+	Silent	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	12	123892235	123892235	G	A	SNP	SETD8	ENST00000330479	human	ensembl	74_37	+1	known	silent	c.1044	p.P348	0.991	pirsf_Hist_H4-K20_MeTrfase	pfam_SET_dom,smart_SET_dom,pirsf_Hist_H4-K20_MeTrfase,pfscan_SET_dom	-	no_errors	SETD8	HGNC	ENSG00000183955				37	0	0	29	4	12.1212
TMEM132D	0	genome.wustl.edu	37	12	129559129	129559129	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	12	129559129	129559129	T	G	SNP	TMEM132D	ENST00000422113	human	ensembl	74_37	-1	known	missense	c.2591	p.K864T	0.000	NULL	NULL	-	no_errors	TMEM132D	HGNC	ENSG00000151952				74	0	0	76	14	15.5556
ULK1	0	genome.wustl.edu	37	12	132401007	132401007	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	12	132401007	132401007	G	T	SNP	ULK1	ENST00000321867	human	ensembl	74_37	+1	known	missense	c.1943	p.R648L	1.000	pirsf_Ser/Thr_kin_STPK_Ulk-1/2	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ser/Thr_kinase_C,pfam_LipoPS_kinase,pfam_RIO-like_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ser/Thr_kin_STPK_Ulk-1/2,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	ULK1	HGNC	ENSG00000177169				127	0	0	98	17	14.7826
EP400	0	genome.wustl.edu	37	12	132502083	132502083	+	Silent	SNP	T	T	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	12	132502083	132502083	T	C	SNP	EP400	ENST00000333577	human	ensembl	74_37	+1	known	silent	c.4035	p.T1345	0.131	pfam_SNF2_N,superfamily_P-loop_NTPase	pfam_SNF2_N,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Homeodomain-like,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Myb-like_dom,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	EP400	HGNC	ENSG00000183495				128	0	0	109	19	14.8438
PGAM5	0	genome.wustl.edu	37	12	133294630	133294630	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	12	133294630	133294630	G	A	SNP	PGAM5	ENST00000498926	human	ensembl	74_37	+1	known	missense	c.643	p.A215T	0.998	pfam_His_Pase_superF_clade-1,smart_His_Pase_superF_clade-1	pfam_His_Pase_superF_clade-1,smart_His_Pase_superF_clade-1	-	no_errors	PGAM5	HGNC	ENSG00000247077				94	0	0	67	14	17.284
ANKLE2	0	genome.wustl.edu	37	12	133313524	133313524	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	12	133313524	133313524	C	T	SNP	ANKLE2	ENST00000357997	human	ensembl	74_37	-1	known	silent	c.1548	p.P516	0.000	NULL	pfam_LEM_dom,superfamily_LEM/LEM-like_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Ribosomal_L9/RNase_H1_N,pfscan_LEM_dom	-	no_errors	ANKLE2	HGNC	ENSG00000176915				150	0	0	137	13	8.66667
GUCY2C	0	genome.wustl.edu	37	12	14796578	14796578	+	Silent	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	12	14796578	14796578	G	A	SNP	GUCY2C	ENST00000261170	human	ensembl	74_37	-1	known	silent	c.1860	p.C620	0.953	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_A/G_cyclase,pfam_ANF_lig-bd_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_A/G_cyclase,superfamily_Peripla_BP_I,superfamily_Kinase-like_dom,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_A/G_cyclase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_A/G_cyclase	-	no_errors	GUCY2C	HGNC	ENSG00000070019				149	0	0	123	28	18.543
RERG	0	genome.wustl.edu	37	12	15262151	15262151	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	12	15262151	15262151	G	A	SNP	RERG	ENST00000256953	human	ensembl	74_37	-1	known	nonsense	c.493	p.R165*	1.000	pfam_Small_GTPase,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RERG	HGNC	ENSG00000134533				168	0	0	116	27	18.8811
ADIPOR2	0	genome.wustl.edu	37	12	1893123	1893123	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	12	1893123	1893123	G	A	SNP	ADIPOR2	ENST00000357103	human	ensembl	74_37	+1	known	missense	c.916	p.A306T	0.999	pfam_HlyIII-related	pfam_HlyIII-related	-	no_errors	ADIPOR2	HGNC	ENSG00000006831				76	0	0	63	4	5.97015
ST8SIA1	0	genome.wustl.edu	37	12	22408252	22408252	+	Silent	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	12	22408252	22408252	G	A	SNP	ST8SIA1	ENST00000396037	human	ensembl	74_37	-1	known	silent	c.453	p.G151	1.000	pfam_Glyco_trans_29,pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST8SIA1	HGNC	ENSG00000111728				274	0	0	233	18	7.17131
PKP2	0	genome.wustl.edu	37	12	33031056	33031056	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	12	33031056	33031056	C	T	SNP	PKP2	ENST00000070846	human	ensembl	74_37	-1	known	missense	c.758	p.G253D	1.000	NULL	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	PKP2	HGNC	ENSG00000057294				64	0	0	54	3	5.26316
SLC2A13	0	genome.wustl.edu	37	12	40158332	40158332	+	Silent	SNP	T	T	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	12	40158332	40158332	T	A	SNP	SLC2A13	ENST00000280871	human	ensembl	74_37	-1	known	silent	c.1650	p.G550	1.000	pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,superfamily_Plexin-like_fold,prints_Sugar/inositol_transpt,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	-	no_errors	SLC2A13	HGNC	ENSG00000151229				120	0	0	108	23	17.5573
LRRK2	0	genome.wustl.edu	37	12	40631824	40631824	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	12	40631824	40631824	T	G	SNP	LRRK2	ENST00000298910	human	ensembl	74_37	+1	known	missense	c.490	p.F164V	1.000	superfamily_ARM-type_fold	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_MIRO-like,pfam_Small_GTPase,pfam_Leu-rich_rpt,pfam_Small_GTPase_ARF/SAR,superfamily_Kinase-like_dom,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,superfamily_WD40_repeat_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Small_GTPase_Rab_type,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,prints_Small_GTPase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	LRRK2	HGNC	ENSG00000188906				107	0	0	99	8	7.47664
ADAMTS20	0	genome.wustl.edu	37	12	43770328	43770328	+	Silent	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	12	43770328	43770328	G	A	SNP	ADAMTS20	ENST00000389420	human	ensembl	74_37	-1	known	silent	c.5124	p.D1708	0.999	superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS20	HGNC	ENSG00000173157				42	0	0	42	4	8.69565
NELL2	0	genome.wustl.edu	37	12	45004675	45004675	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	12	45004675	45004675	C	T	SNP	NELL2	ENST00000437801	human	ensembl	74_37	-1	known	missense	c.1673	p.C558Y	1.000	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd_dom,pfam_VWF_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_VWC_out,smart_VWF_C,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_VWF_C	-	no_errors	NELL2	HGNC	ENSG00000184613				87	0	0	56	8	12.5
FGF6	0	genome.wustl.edu	37	12	4554633	4554633	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	12	4554633	4554633	A	G	SNP	FGF6	ENST00000228837	human	ensembl	74_37	-1	known	missense	c.104	p.V35A	1.000	NULL	pfam_Fibroblast_GF_fam,superfamily_Cytokine_IL1-like,smart_Fibroblast_GF_fam,prints_Fibroblast_GF_fam,prints_IL-1_fam/FGF_fam	-	no_errors	FGF6	HGNC	ENSG00000111241				101	0	0	65	19	22.619
KCNA6	0	genome.wustl.edu	37	12	4920241	4920241	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	12	4920241	4920241	G	A	SNP	KCNA6	ENST00000280684	human	ensembl	74_37	+1	known	missense	c.1034	p.R345H	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.6,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA6	HGNC	ENSG00000151079				57	0	0	41	9	18
WNT1	0	genome.wustl.edu	37	12	49374314	49374314	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	12	49374314	49374314	C	T	SNP	WNT1	ENST00000293549	human	ensembl	74_37	+1	known	missense	c.466	p.R156W	1.000	pfam_Wnt,smart_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt1	-	no_errors	WNT1	HGNC	ENSG00000125084				34	0	0	29	4	12.1212
LIMA1	0	genome.wustl.edu	37	12	50571305	50571305	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	12	50571305	50571305	C	T	SNP	LIMA1	ENST00000394943	human	ensembl	74_37	-1	known	missense	c.1825	p.V609M	0.000	NULL	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	LIMA1	HGNC	ENSG00000050405				384	0	0	336	19	5.35211
KRT73	0	genome.wustl.edu	37	12	53012094	53012094	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	12	53012094	53012094	C	T	SNP	KRT73	ENST00000305748	human	ensembl	74_37	-1	known	missense	c.215	p.G72E	0.991	NULL	pfam_IF,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT73	HGNC	ENSG00000186049				226	0	0	172	32	15.6863
KRT79	0	genome.wustl.edu	37	12	53227817	53227817	+	Silent	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	12	53227817	53227817	G	A	SNP	KRT79	ENST00000330553	human	ensembl	74_37	-1	known	silent	c.228	p.A76	0.006	NULL	pfam_IF,superfamily_STAT_TF_coiled-coil,prints_Keratin_II	-	no_errors	KRT79	HGNC	ENSG00000185640				80	0	0	71	12	14.4578
TENC1	0	genome.wustl.edu	37	12	53451888	53451888	+	Splice_Site	SNP	T	T	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	12	53451888	53451888	T	C	SNP	TENC1	ENST00000314276	human	ensembl	74_37	+1	known	splice_site	c.1125+2	e14+2	1.000	-	-	-	no_errors	TENC1	HGNC	ENSG00000111077				51	0	0	44	11	20
SOAT2	0	genome.wustl.edu	37	12	53515103	53515103	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	12	53515103	53515103	C	T	SNP	SOAT2	ENST00000301466	human	ensembl	74_37	+1	known	missense	c.1154	p.T385M	0.980	pfam_MBOAT_fam	pfam_MBOAT_fam	-	no_errors	SOAT2	HGNC	ENSG00000167780				109	0	0	76	15	16.4835
ZNF385A	0	genome.wustl.edu	37	12	54765373	54765373	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	12	54765373	54765373	G	A	SNP	ZNF385A	ENST00000338010	human	ensembl	74_37	-1	known	missense	c.548	p.P183L	0.991	NULL	pfam_Znf_C2H2_jaz,smart_Znf_U1,smart_Znf_C2H2-like	-	no_errors	ZNF385A	HGNC	ENSG00000161642				168	0	0	117	31	20.9459
TESPA1	0	genome.wustl.edu	37	12	55360194	55360194	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	12	55360194	55360194	C	T	SNP	TESPA1	ENST00000316577	human	ensembl	74_37	-1	known	missense	c.325	p.A109T	0.214	NULL	NULL	-	no_errors	TESPA1	HGNC	ENSG00000135426				101	0	0	101	16	13.6752
OR6C4	0	genome.wustl.edu	37	12	55945174	55945174	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	12	55945174	55945174	C	G	SNP	OR6C4	ENST00000394256	human	ensembl	74_37	+1	known	missense	c.164	p.T55S	0.304	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6C4	HGNC	ENSG00000179626				196	0	0	150	31	17.1271
ITGA7	0	genome.wustl.edu	37	12	56082688	56082688	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	12	56082688	56082688	G	T	SNP	ITGA7	ENST00000555728	human	ensembl	74_37	-1	known	missense	c.3030	p.S1010R	1.000	NULL	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA7	HGNC	ENSG00000135424				91	0	0	74	21	22.1053
GPR182	0	genome.wustl.edu	37	12	57389029	57389029	+	Silent	SNP	G	G	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	12	57389029	57389029	G	T	SNP	GPR182	ENST00000300098	human	ensembl	74_37	+1	known	silent	c.36	p.S12	0.000	prints_G10D_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_G10D_rcpt,prints_GPCR_Rhodpsn,prints_ATII_rcpt	-	no_errors	GPR182	HGNC	ENSG00000166856				170	0	0	136	26	16.0494
MON2	0	genome.wustl.edu	37	12	62926342	62926342	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	12	62926342	62926342	G	T	SNP	MON2	ENST00000393630	human	ensembl	74_37	+1	known	nonsense	c.1525	p.E509*	0.998	NULL	pfam_DUF1981_Sec7_assoc,superfamily_ARM-type_fold	-	no_errors	MON2	HGNC	ENSG00000061987				63	0	0	54	16	22.8571
PLEKHG6	0	genome.wustl.edu	37	12	6422807	6422807	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	12	6422807	6422807	C	T	SNP	PLEKHG6	ENST00000011684	human	ensembl	74_37	+1	known	nonsense	c.151	p.R51*	0.013	NULL	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG6	HGNC	ENSG00000008323				93	0	0	75	12	13.7931
PLEKHG6	0	genome.wustl.edu	37	12	6435695	6435695	+	Silent	SNP	C	C	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	12	6435695	6435695	C	A	SNP	PLEKHG6	ENST00000011684	human	ensembl	74_37	+1	known	silent	c.1626	p.P542	0.994	NULL	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG6	HGNC	ENSG00000008323				44	0	0	42	6	12.5
TNFRSF1A	0	genome.wustl.edu	37	12	6450990	6450990	+	RNA	SNP	C	C	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	12	6450990	6450990	C	A	SNP	TNFRSF1A	ENST00000535958	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.187	-	-	-	no_errors	TNFRSF1A	HGNC	ENSG00000067182				76	0	0	47	8	14.5455
NCAPD2	0	genome.wustl.edu	37	12	6637928	6637928	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	12	6637928	6637928	A	G	SNP	NCAPD2	ENST00000315579	human	ensembl	74_37	+1	known	missense	c.3383	p.K1128R	1.000	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_Condensin_cplx_su1	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_Condensin_cplx_su1	-	no_errors	NCAPD2	HGNC	ENSG00000010292				58	0	0	67	15	18.2927
CAND1	0	genome.wustl.edu	37	12	67696193	67696193	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	12	67696193	67696193	G	T	SNP	CAND1	ENST00000545606	human	ensembl	74_37	+1	known	missense	c.1091	p.R364M	1.000	superfamily_ARM-type_fold	pfam_TATA-bd_TIP120,pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	CAND1	HGNC	ENSG00000111530				186	0	0	121	20	14.1844
CAND1	0	genome.wustl.edu	37	12	67700125	67700125	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	12	67700125	67700125	C	T	SNP	CAND1	ENST00000545606	human	ensembl	74_37	+1	known	missense	c.2677	p.P893S	1.000	superfamily_ARM-type_fold	pfam_TATA-bd_TIP120,pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	CAND1	HGNC	ENSG00000111530				97	0	0	84	18	17.6471
ZNF384	0	genome.wustl.edu	37	12	6781678	6781678	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	12	6781678	6781678	G	A	SNP	ZNF384	ENST00000361959	human	ensembl	74_37	-1	known	missense	c.932	p.T311M	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF384	HGNC	ENSG00000126746				61	0	0	55	10	15.3846
PEX5	0	genome.wustl.edu	37	12	7361095	7361095	+	Silent	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	12	7361095	7361095	G	A	SNP	PEX5	ENST00000434354	human	ensembl	74_37	+1	known	silent	c.1269	p.A423	0.001	pfscan_TPR-contain_dom	pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	PEX5	HGNC	ENSG00000139197				72	0	0	59	12	16.9014
OTOGL	0	genome.wustl.edu	37	12	80633160	80633160	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	12	80633160	80633160	C	T	SNP	OTOGL	ENST00000458043	human	ensembl	74_37	+1	known	silent	c.966	p.S322	1.000	pfam_Unchr_dom_Cys-rich,smart_Unchr_dom_Cys-rich	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_AbfB,superfamily_AbfB,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_Cys_knot_C,pfscan_Cys_knot_C	-	no_errors	OTOGL	HGNC	ENSG00000165899				153	0	0	116	24	17.1429
LRRIQ1	0	genome.wustl.edu	37	12	85445956	85445956	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	12	85445956	85445956	A	G	SNP	LRRIQ1	ENST00000393217	human	ensembl	74_37	+1	known	missense	c.680	p.Q227R	1.000	NULL	pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_IQ_motif_EF-hand-BS,smart_Leu-rich_rpt_typical-subtyp,pfscan_IQ_motif_EF-hand-BS	-	no_errors	LRRIQ1	HGNC	ENSG00000133640				103	0	0	74	24	24.4898
ELK3	0	genome.wustl.edu	37	12	96641034	96641034	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	12	96641034	96641034	C	A	SNP	ELK3	ENST00000228741	human	ensembl	74_37	+1	known	missense	c.524	p.P175H	0.373	NULL	pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	ELK3	HGNC	ENSG00000111145				82	0	0	72	4	5.26316
WNK1	0	genome.wustl.edu	37	12	978006	978006	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	12	978006	978006	C	T	SNP	WNK1	ENST00000530271	human	ensembl	74_37	+1	known	silent	c.3369	p.I1123	0.224	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	WNK1	HGNC	ENSG00000060237				124	0	0	115	7	5.7377
TMPO	0	genome.wustl.edu	37	12	98938068	98938068	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	12	98938068	98938068	C	T	SNP	TMPO	ENST00000556029	human	ensembl	74_37	+1	known	missense	c.724	p.P242S	1.000	NULL	pfam_LEM-like_dom,pfam_LEM_dom,superfamily_LEM/LEM-like_dom,smart_LEM_dom,pfscan_LEM_dom,pfscan_LEM-like_dom	-	no_errors	TMPO	HGNC	ENSG00000120802				56	0	0	58	7	10.7692
MYO16	0	genome.wustl.edu	37	13	109707413	109707413	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	13	109707413	109707413	C	T	SNP	MYO16	ENST00000356711	human	ensembl	74_37	+1	known	missense	c.3002	p.T1001I	0.581	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Ankyrin_rpt,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Myosin_head_motor_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO16	HGNC	ENSG00000041515				56	0	0	46	8	14.8148
IRS2	0	genome.wustl.edu	37	13	110438061	110438061	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	13	110438061	110438061	C	T	SNP	IRS2	ENST00000375856	human	ensembl	74_37	-1	known	missense	c.340	p.A114T	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Insln_rcpt_S1,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,pfscan_Pleckstrin_homology,pfscan_Insln_rcpt_S1,prints_Insln_rcpt_S1	-	no_errors	IRS2	HGNC	ENSG00000185950				41	0	0	30	4	11.7647
COL4A1	0	genome.wustl.edu	37	13	110804777	110804777	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	13	110804777	110804777	G	A	SNP	COL4A1	ENST00000375820	human	ensembl	74_37	-1	known	missense	c.4832	p.A1611V	0.998	pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A1	HGNC	ENSG00000187498				74	0	0	44	16	26.6667
CARS2	0	genome.wustl.edu	37	13	111329449	111329449	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	13	111329449	111329449	C	T	SNP	CARS2	ENST00000257347	human	ensembl	74_37	-1	known	silent	c.657	p.A219	0.000	pfam_Cys-tRNA/MSH_ligase,tigrfam_Cys-tRNA-ligase	pfam_Cys-tRNA/MSH_ligase,pfam_Methionyl/Leucyl_tRNA_Synth,pfam_aa-tRNA-synth_Ia,superfamily_tRNAsynth_1a_anticodon-bd,prints_Cys-tRNA/MSH_ligase,tigrfam_Cys-tRNA-ligase	-	no_errors	CARS2	HGNC	ENSG00000134905				86	0	0	72	18	20
MCF2L	0	genome.wustl.edu	37	13	113729379	113729379	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	13	113729379	113729379	C	T	SNP	MCF2L	ENST00000375604	human	ensembl	74_37	+1	known	missense	c.1355	p.A452V	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_DH-domain,pfam_Spectrin_repeat,pfam_Pleckstrin_homology,pfam_SH3_2,superfamily_DH-domain,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	MCF2L	HGNC	ENSG00000126217				142	1	0.699301	112	20	15.1515
MCF2L	0	genome.wustl.edu	37	13	113748914	113748914	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	13	113748914	113748914	G	A	SNP	MCF2L	ENST00000375604	human	ensembl	74_37	+1	known	missense	c.3211	p.A1071T	0.024	NULL	pfam_DH-domain,pfam_Spectrin_repeat,pfam_Pleckstrin_homology,pfam_SH3_2,superfamily_DH-domain,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	MCF2L	HGNC	ENSG00000126217				51	0	0	22	6	21.4286
F7	0	genome.wustl.edu	37	13	113768258	113768258	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	13	113768258	113768258	C	T	SNP	F7	ENST00000375581	human	ensembl	74_37	+1	known	silent	c.414	p.G138	0.470	pirsf_Pept_S1A_FX,pfam_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pirsf_Pept_S1A_FX,pfam_Peptidase_S1,pfam_GLA_domain,pfam_Peptidase_S1A_nudel,pfam_EG-like_dom,superfamily_Trypsin-like_Pept_dom,superfamily_GLA_domain,smart_GLA_domain,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Peptidase_S1,prints_Peptidase_S1A,prints_GLA_domain,pfscan_EG-like_dom,pfscan_GLA_domain,pfscan_Peptidase_S1	-	no_errors	F7	HGNC	ENSG00000057593				77	0	0	68	5	6.84932
LAMP1	0	genome.wustl.edu	37	13	113976139	113976139	+	RNA	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	13	113976139	113976139	G	A	SNP	LAMP1	ENST00000471046	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	LAMP1	HGNC	ENSG00000185896				20	0	0	11	4	26.6667
TMCO3	0	genome.wustl.edu	37	13	114203860	114203860	+	RNA	SNP	G	G	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	13	114203860	114203860	G	T	SNP	TMCO3	ENST00000460039	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TMCO3	HGNC	ENSG00000150403				39	0	0	30	6	16.6667
UPF3A	0	genome.wustl.edu	37	13	115048366	115048366	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	13	115048366	115048366	C	T	SNP	UPF3A	ENST00000375299	human	ensembl	74_37	+1	known	silent	c.369	p.D123	1.000	pfam_Nonsense_mediated_decay_UPF3	pfam_Nonsense_mediated_decay_UPF3	-	no_errors	UPF3A	HGNC	ENSG00000169062				78	0	0	40	10	20
CRYL1	0	genome.wustl.edu	37	13	21006389	21006389	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	13	21006389	21006389	G	A	SNP	CRYL1	ENST00000298248	human	ensembl	74_37	-1	known	missense	c.485	p.P162L	0.997	pfam_3-OHacyl-CoA_DH_NAD-bd	pfam_3-OHacyl-CoA_DH_NAD-bd,pfam_3HC_DH_C,superfamily_6-PGluconate_DH_C-like	-	no_errors	CRYL1	HGNC	ENSG00000165475				85	0	0	58	13	18.3099
FGF9	0	genome.wustl.edu	37	13	22246092	22246092	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	13	22246092	22246092	A	G	SNP	FGF9	ENST00000382353	human	ensembl	74_37	+1	known	missense	c.41	p.Q14R	1.000	NULL	pfam_Fibroblast_GF_fam,superfamily_Cytokine_IL1-like,smart_Fibroblast_GF_fam,prints_Fibroblast_GF_fam,prints_IL-1_fam/FGF_fam	-	no_errors	FGF9	HGNC	ENSG00000102678				176	0	0	146	26	15.1163
SACS	0	genome.wustl.edu	37	13	23907766	23907766	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	13	23907766	23907766	T	G	SNP	SACS	ENST00000382292	human	ensembl	74_37	-1	known	missense	c.10249	p.S3417R	1.000	NULL	pfam_HEPN,pfam_Ubiquitin_dom,superfamily_HATPase_ATP-bd,superfamily_DnaJ_domain,smart_HEPN,pfscan_HEPN,pfscan_DnaJ_domain,pfscan_Ubiquitin_supergroup	-	no_errors	SACS	HGNC	ENSG00000151835				125	0	0	104	24	18.75
SACS	0	genome.wustl.edu	37	13	23911305	23911305	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	13	23911305	23911305	T	C	SNP	SACS	ENST00000382292	human	ensembl	74_37	-1	known	missense	c.6710	p.E2237G	1.000	NULL	pfam_HEPN,pfam_Ubiquitin_dom,superfamily_HATPase_ATP-bd,superfamily_DnaJ_domain,smart_HEPN,pfscan_HEPN,pfscan_DnaJ_domain,pfscan_Ubiquitin_supergroup	-	no_errors	SACS	HGNC	ENSG00000151835				66	0	0	50	13	20.6349
PARP4	0	genome.wustl.edu	37	13	25009030	25009030	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	13	25009030	25009030	G	A	SNP	PARP4	ENST00000381989	human	ensembl	74_37	-1	known	missense	c.4249	p.P1417S	0.000	NULL	pfam_Poly(ADP-ribose)pol_cat_dom,pfam_VIT,pfam_VWF_A,pfam_BRCT_dom,superfamily_Poly(ADP-ribose)pol_reg_dom,superfamily_BRCT_dom,smart_BRCT_dom,smart_VIT,smart_VWF_A,pfscan_BRCT_dom,pfscan_VWF_A,pfscan_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_reg_dom	-	no_errors	PARP4	HGNC	ENSG00000102699				54	0	0	40	13	24.5283
RNF17	0	genome.wustl.edu	37	13	25399909	25399909	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	13	25399909	25399909	C	T	SNP	RNF17	ENST00000255324	human	ensembl	74_37	+1	known	silent	c.2244	p.I748	0.630	pfam_Tudor,smart_Tudor,pfscan_Tudor	pfam_Tudor,smart_Tudor,pfscan_Tudor,pfscan_Znf_RING	-	no_errors	RNF17	HGNC	ENSG00000132972				94	0	0	65	12	15.5844
CENPJ	0	genome.wustl.edu	37	13	25484117	25484117	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	13	25484117	25484117	G	A	SNP	CENPJ	ENST00000381884	human	ensembl	74_37	-1	known	missense	c.676	p.P226S	0.885	NULL	pfam_Tcp10_C_dom	-	no_errors	CENPJ	HGNC	ENSG00000151849				189	0	0	148	29	16.3842
POLR1D	0	genome.wustl.edu	37	13	28240143	28240143	+	RNA	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	13	28240143	28240143	C	T	SNP	POLR1D	ENST00000465887	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	POLR1D	HGNC	ENSG00000186184				42	0	0	35	6	14.6341
FRY	0	genome.wustl.edu	37	13	32783063	32783063	+	Silent	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	13	32783063	32783063	G	A	SNP	FRY	ENST00000380250	human	ensembl	74_37	+1	known	silent	c.4092	p.L1364	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	FRY	HGNC	ENSG00000073910				80	0	0	71	16	18.3908
BRCA2	0	genome.wustl.edu	37	13	32931894	32931894	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	13	32931894	32931894	G	A	SNP	BRCA2	ENST00000380152	human	ensembl	74_37	+1	known	missense	c.7633	p.V2545I	0.918	pfam_DNA_recomb/repair_BRCA2_hlx,superfamily_DNA_recomb/repair_BRCA2_hlx,pirsf_BRCA2	pfam_DNA_recomb/repair_BRCA2_hlx,pfam_BRCA2_repeat,pfam_BRCA2_OB_3,pfam_BRCA2_OB_1,pfam_Tower,superfamily_DNA_recomb/repair_BRCA2_hlx,superfamily_NA-bd_OB-fold,pirsf_BRCA2,pfscan_BRCA2_repeat	-	no_errors	BRCA2	HGNC	ENSG00000139618				79	0	0	55	13	19.1176
RFC3	0	genome.wustl.edu	37	13	34404030	34404030	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	13	34404030	34404030	G	A	SNP	RFC3	ENST00000380071	human	ensembl	74_37	+1	known	missense	c.449	p.R150K	0.999	pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,superfamily_DNA_pol3_clamp-load_cplx_C,smart_AAA+_ATPase	-	no_errors	RFC3	HGNC	ENSG00000133119				106	0	0	81	17	17.3469
NBEA	0	genome.wustl.edu	37	13	35923259	35923259	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	13	35923259	35923259	C	T	SNP	NBEA	ENST00000310336	human	ensembl	74_37	+1	known	missense	c.5918	p.A1973V	1.000	pfam_DUF1088	pfam_BEACH_dom,pfam_DUF1088,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_ConA-like_lec_gl_sf,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat_dom	-	no_errors	NBEA	HGNC	ENSG00000172915				56	0	0	36	11	23.4043
CCNA1	0	genome.wustl.edu	37	13	37012857	37012857	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	13	37012857	37012857	A	T	SNP	CCNA1	ENST00000255465	human	ensembl	74_37	+1	known	missense	c.746	p.D249V	1.000	pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_A/B/D/E	pfam_Cyclin_N,pfam_Cyclin_C-dom,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_A/B/D/E	-	no_errors	CCNA1	HGNC	ENSG00000133101				82	0	0	59	15	20.2703
FREM2	0	genome.wustl.edu	37	13	39262365	39262365	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	13	39262365	39262365	G	T	SNP	FREM2	ENST00000280481	human	ensembl	74_37	+1	known	missense	c.884	p.S295I	0.933	NULL	pfam_Calx_beta,superfamily_Cadherin-like,smart_Calx_beta	-	no_errors	FREM2	HGNC	ENSG00000150893				86	0	0	58	9	13.4328
FREM2	0	genome.wustl.edu	37	13	39264188	39264188	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	13	39264188	39264188	G	T	SNP	FREM2	ENST00000280481	human	ensembl	74_37	+1	known	missense	c.2707	p.A903S	0.000	NULL	pfam_Calx_beta,superfamily_Cadherin-like,smart_Calx_beta	-	no_errors	FREM2	HGNC	ENSG00000150893				78	0	0	45	7	13.4615
VWA8	0	genome.wustl.edu	37	13	42149928	42149928	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	13	42149928	42149928	A	G	SNP	VWA8	ENST00000379310	human	ensembl	74_37	-1	known	missense	c.5318	p.V1773A	0.997	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_ATPase_dyneun-rel_AAA,pfam_VWF_A,superfamily_P-loop_NTPase,smart_AAA+_ATPase,smart_VWF_A,pfscan_VWF_A	-	no_errors	VWA8	HGNC	ENSG00000102763				85	0	0	65	16	19.7531
DNAJC15	0	genome.wustl.edu	37	13	43652796	43652796	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	13	43652796	43652796	C	T	SNP	DNAJC15	ENST00000379221	human	ensembl	74_37	+1	known	nonsense	c.283	p.R95*	1.000	superfamily_DnaJ_domain,smart_DnaJ_domain	pfam_DnaJ_domain,superfamily_DnaJ_domain,smart_DnaJ_domain,pfscan_DnaJ_domain	-	no_errors	DNAJC15	HGNC	ENSG00000120675				58	0	0	45	8	15.0943
SIAH3	0	genome.wustl.edu	37	13	46357608	46357608	+	Silent	SNP	C	C	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	13	46357608	46357608	C	A	SNP	SIAH3	ENST00000400405	human	ensembl	74_37	-1	known	silent	c.720	p.S240	0.999	pfam_7-in-absentia-prot_TRAF-dom,superfamily_TRAF-like	pfam_7-in-absentia-prot_TRAF-dom,superfamily_TRAF-like	-	no_errors	SIAH3	HGNC	ENSG00000215475				106	0	0	90	17	15.8879
RCBTB2	0	genome.wustl.edu	37	13	49084818	49084818	+	Silent	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	13	49084818	49084818	A	G	SNP	RCBTB2	ENST00000430805	human	ensembl	74_37	-1	known	silent	c.888	p.T296	0.851	pfam_Reg_chr_condens,superfamily_RCC1/BLIP-II,pfscan_Reg_chr_condens,prints_Reg_chr_condens	pfam_Reg_chr_condens,pfam_BTB_POZ,superfamily_RCC1/BLIP-II,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	RCBTB2	HGNC	ENSG00000136161				115	0	0	115	14	10.8527
THSD1	0	genome.wustl.edu	37	13	52951775	52951775	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	13	52951775	52951775	G	T	SNP	THSD1	ENST00000258613	human	ensembl	74_37	-1	known	missense	c.2330	p.P777H	0.797	NULL	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD1	HGNC	ENSG00000136114				291	0	0	195	36	15.5844
PCDH9	0	genome.wustl.edu	37	13	66878841	66878841	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	13	66878841	66878841	C	T	SNP	PCDH9	ENST00000377865	human	ensembl	74_37	-1	known	silent	c.3660	p.K1220	1.000	NULL	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH9	HGNC	ENSG00000184226				86	0	0	70	6	7.89474
PCDH9	0	genome.wustl.edu	37	13	67799528	67799528	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	13	67799528	67799528	C	T	SNP	PCDH9	ENST00000377861	human	ensembl	74_37	-1	known	silent	c.3045	p.E1015	1.000	NULL	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH9	HGNC	ENSG00000184226				80	0	0	69	6	8
RNF219	0	genome.wustl.edu	37	13	79191043	79191043	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	13	79191043	79191043	T	C	SNP	RNF219	ENST00000282003	human	ensembl	74_37	-1	known	missense	c.853	p.S285G	0.048	NULL	pfscan_Znf_RING	-	no_errors	RNF219	HGNC	ENSG00000152193				107	0	0	82	12	12.766
SLITRK1	0	genome.wustl.edu	37	13	84453981	84453981	+	Silent	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	13	84453981	84453981	G	A	SNP	SLITRK1	ENST00000377084	human	ensembl	74_37	-1	known	silent	c.1662	p.S554	1.000	smart_Cys-rich_flank_reg_C	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK1	HGNC	ENSG00000178235				62	0	0	41	12	22.6415
DNAJC3	0	genome.wustl.edu	37	13	96443251	96443251	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	13	96443251	96443251	C	T	SNP	DNAJC3	ENST00000602402	human	ensembl	74_37	+1	known	silent	c.1482	p.G494	0.991	NULL	pfam_TPR_1,pfam_DnaJ_domain,smart_TPR_repeat,smart_DnaJ_domain,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_DnaJ_domain,prints_DnaJ_domain	-	no_errors	DNAJC3	HGNC	ENSG00000102580				143	0	0	112	15	11.811
KLC1	0	genome.wustl.edu	37	14	104135937	104135937	+	Splice_Site	SNP	T	T	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	14	104135937	104135937	T	G	SNP	KLC1	ENST00000334553	human	ensembl	74_37	+1	known	splice_site	c.885+2	e5+2	1.000	-	-	-	no_errors	KLC1	HGNC	ENSG00000126214				79	0	0	79	14	15.0538
INF2	0	genome.wustl.edu	37	14	105169515	105169515	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	14	105169515	105169515	C	T	SNP	INF2	ENST00000392634	human	ensembl	74_37	+1	known	silent	c.465	p.P155	0.036	superfamily_ARM-type_fold	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,pfam_WH2_dom,superfamily_ARM-type_fold,smart_FH2_Formin,pfscan_WH2_dom	-	no_errors	INF2	HGNC	ENSG00000203485				71	0	0	62	10	13.8889
AKT1	0	genome.wustl.edu	37	14	105246551	105246551	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	14	105246551	105246551	C	T	SNP	AKT1	ENST00000349310	human	ensembl	74_37	-1	known	missense	c.49	p.E17K	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pleckstrin_homology,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom	-	no_errors	AKT1	HGNC	ENSG00000142208				47	0	0	37	6	13.9535
RPGRIP1	0	genome.wustl.edu	37	14	21813344	21813344	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	14	21813344	21813344	C	A	SNP	RPGRIP1	ENST00000206660	human	ensembl	74_37	+1	known	missense	c.3605	p.P1202H	0.338	NULL	pfam_DUF3250,superfamily_C2_dom	-	no_errors	RPGRIP1	HGNC	ENSG00000092200				70	0	0	52	12	18.75
RBM23	0	genome.wustl.edu	37	14	23374320	23374320	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	14	23374320	23374320	T	C	SNP	RBM23	ENST00000359890	human	ensembl	74_37	-1	known	missense	c.709	p.I237V	1.000	smart_RRM_dom,pfscan_RRM_dom,tigrfam_CC1_SF	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_CC1_SF	-	no_errors	RBM23	HGNC	ENSG00000100461				116	0	0	74	16	17.7778
MYH6	0	genome.wustl.edu	37	14	23868196	23868196	+	Silent	SNP	G	G	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	14	23868196	23868196	G	T	SNP	MYH6	ENST00000356287	human	ensembl	74_37	-1	known	silent	c.1632	p.A544	0.708	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH6	HGNC	ENSG00000197616				126	0	0	78	15	16.129
MYH7	0	genome.wustl.edu	37	14	23897852	23897852	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	14	23897852	23897852	T	C	SNP	MYH7	ENST00000355349	human	ensembl	74_37	-1	known	missense	c.1435	p.N479D	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH7	HGNC	ENSG00000092054				93	0	0	53	15	22.0588
RABGGTA	0	genome.wustl.edu	37	14	24734876	24734876	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	14	24734876	24734876	C	T	SNP	RABGGTA	ENST00000216840	human	ensembl	74_37	-1	known	missense	c.1649	p.G550D	0.000	NULL	pfam_Prenyl_trans_a,pfam_RabGGT_asu_insert-domain,pfam_Leu-rich_rpt,superfamily_RabGGT_asu_insert-domain,pfscan_Prenyl_trans_a	-	no_errors	RABGGTA	HGNC	ENSG00000100949				46	0	0	20	2	9.09091
CIDEB	0	genome.wustl.edu	37	14	24774855	24774855	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	14	24774855	24774855	C	T	SNP	CIDEB	ENST00000258807	human	ensembl	74_37	-1	known	missense	c.644	p.R215H	1.000	NULL	pfam_CIDE-N_dom,smart_CIDE-N_dom,pfscan_CIDE-N_dom	-	no_errors	CIDEB	HGNC	ENSG00000136305				94	0	0	76	17	18.2796
CBLN3	0	genome.wustl.edu	37	14	24897594	24897594	+	Silent	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	14	24897594	24897594	G	A	SNP	CBLN3	ENST00000267406	human	ensembl	74_37	-1	known	silent	c.318	p.G106	0.000	pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	CBLN3	HGNC	ENSG00000139899				76	0	0	56	5	8.19672
AKAP6	0	genome.wustl.edu	37	14	33293172	33293172	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	14	33293172	33293172	C	T	SNP	AKAP6	ENST00000280979	human	ensembl	74_37	+1	known	silent	c.6153	p.A2051	0.979	NULL	smart_Spectrin/alpha-actinin	-	no_errors	AKAP6	HGNC	ENSG00000151320				57	0	0	50	8	13.7931
AKAP6	0	genome.wustl.edu	37	14	33293952	33293952	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	14	33293952	33293952	A	C	SNP	AKAP6	ENST00000280979	human	ensembl	74_37	+1	known	missense	c.6933	p.E2311D	0.996	NULL	smart_Spectrin/alpha-actinin	-	no_errors	AKAP6	HGNC	ENSG00000151320				114	0	0	83	16	16.1616
MIPOL1	0	genome.wustl.edu	37	14	37969313	37969313	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	14	37969313	37969313	C	T	SNP	MIPOL1	ENST00000327441	human	ensembl	74_37	+1	known	missense	c.1232	p.A411V	0.992	NULL	NULL	-	no_errors	MIPOL1	HGNC	ENSG00000151338				65	0	0	53	14	20.8955
MIS18BP1	0	genome.wustl.edu	37	14	45693641	45693641	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	14	45693641	45693641	G	A	SNP	MIS18BP1	ENST00000310806	human	ensembl	74_37	-1	known	missense	c.2149	p.R717C	0.000	NULL	pfam_SANTA,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	MIS18BP1	HGNC	ENSG00000129534				117	0	0	86	19	18.0952
MGAT2	0	genome.wustl.edu	37	14	50088877	50088877	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	14	50088877	50088877	T	A	SNP	MGAT2	ENST00000305386	human	ensembl	74_37	+1	known	missense	c.891	p.S297R	0.145	pfam_GlcNAc_II	pfam_GlcNAc_II	-	no_errors	MGAT2	HGNC	ENSG00000168282				173	1	0.574713	130	22	14.4737
MAP4K5	0	genome.wustl.edu	37	14	50911877	50911877	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	14	50911877	50911877	C	T	SNP	MAP4K5	ENST00000013125	human	ensembl	74_37	-1	known	silent	c.1221	p.P407	0.907	superfamily_Kinase-like_dom	pfam_Citron,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_dom	-	no_errors	MAP4K5	HGNC	ENSG00000012983				48	0	0	29	7	19.4444
CDKN3	0	genome.wustl.edu	37	14	54886793	54886793	+	Silent	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	14	54886793	54886793	A	G	SNP	CDKN3	ENST00000335183	human	ensembl	74_37	+1	known	silent	c.636	p.R212	1.000	pirsf_CDK_inhib_3	pfam_CDKN3,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Dual-sp_phosphatase_cat-dom,smart_Tyr_Pase_cat,pirsf_CDK_inhib_3,pfscan_Tyr/Dual-sp_Pase	-	no_errors	CDKN3	HGNC	ENSG00000100526				98	0	0	61	24	28.2353
SIX1	0	genome.wustl.edu	37	14	61115656	61115656	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	14	61115656	61115656	C	G	SNP	SIX1	ENST00000247182	human	ensembl	74_37	-1	known	missense	c.252	p.Q84H	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	SIX1	HGNC	ENSG00000126778				284	0	0	242	20	7.63359
KCNH5	0	genome.wustl.edu	37	14	63269228	63269228	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	14	63269228	63269228	T	G	SNP	KCNH5	ENST00000322893	human	ensembl	74_37	-1	known	missense	c.1641	p.E547D	0.950	superfamily_cNMP-bd-like	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,pfam_cNMP-bd_dom,pfam_PAS_fold,superfamily_cNMP-bd-like,superfamily_PAS,smart_PAC,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,pfscan_PAS-assoc_C,tigrfam_PAS	-	no_errors	KCNH5	HGNC	ENSG00000140015				65	0	0	68	4	5.55556
SYNE2	0	genome.wustl.edu	37	14	64519852	64519852	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	14	64519852	64519852	A	G	SNP	SYNE2	ENST00000358025	human	ensembl	74_37	+1	known	missense	c.9221	p.D3074G	0.000	NULL	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654				56	0	0	46	15	24.5902
MTHFD1	0	genome.wustl.edu	37	14	64908801	64908801	+	Silent	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	14	64908801	64908801	G	A	SNP	MTHFD1	ENST00000216605	human	ensembl	74_37	+1	known	silent	c.1914	p.P638	0.001	pfam_Formate_THF_ligase,superfamily_P-loop_NTPase	pfam_Formate_THF_ligase,pfam_THF_DH/CycHdrlase_NAD-bd_dom,pfam_THF_DH/CycHdrlase_cat_dom,superfamily_P-loop_NTPase,prints_THF_DH/CycHdrlase	-	no_errors	MTHFD1	HGNC	ENSG00000100714				83	0	0	61	16	20.7792
PCNX	0	genome.wustl.edu	37	14	71443908	71443908	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	14	71443908	71443908	G	A	SNP	PCNX	ENST00000304743	human	ensembl	74_37	+1	known	missense	c.854	p.R285Q	1.000	NULL	pfam_Pecanex	-	no_errors	PCNX	HGNC	ENSG00000100731				125	1	0.793651	122	26	17.5676
ZC2HC1C	0	genome.wustl.edu	37	14	75537988	75537988	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	14	75537988	75537988	C	T	SNP	ZC2HC1C	ENST00000524913	human	ensembl	74_37	+1	known	silent	c.712	p.L238	1.000	NULL	NULL	-	no_errors	ZC2HC1C	HGNC	ENSG00000119703				90	0	0	67	13	16.25
VASH1	0	genome.wustl.edu	37	14	77242266	77242266	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	14	77242266	77242266	C	T	SNP	VASH1	ENST00000167106	human	ensembl	74_37	+1	known	missense	c.562	p.R188C	1.000	NULL	NULL	-	no_errors	VASH1	HGNC	ENSG00000071246				25	0	0	13	4	23.5294
POMT2	0	genome.wustl.edu	37	14	77745128	77745128	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	14	77745128	77745128	C	T	SNP	POMT2	ENST00000261534	human	ensembl	74_37	-1	known	missense	c.1976	p.R659Q	1.000	NULL	pfam_Glyco_trans_39,pfam_MIR_motif,superfamily_MIR_motif,smart_MIR_motif,pfscan_MIR_motif	-	no_errors	POMT2	HGNC	ENSG00000009830				92	0	0	75	18	19.3548
CALM1	0	genome.wustl.edu	37	14	90870757	90870757	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	14	90870757	90870757	G	A	SNP	CALM1	ENST00000356978	human	ensembl	74_37	+1	known	missense	c.320	p.R107H	1.000	pfam_EF_hand_dom,pfam_EF-hand_Ca_insen,smart_EF_hand_dom,pfscan_EF_hand_dom,prints_Recoverin	pfam_EF_hand_dom,pfam_EF-hand_Ca_insen,smart_EF_hand_dom,pfscan_EF_hand_dom,prints_Recoverin	-	no_errors	CALM1	HGNC	ENSG00000198668				82	0	0	60	9	13.0435
C14orf159	0	genome.wustl.edu	37	14	91633872	91633872	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	14	91633872	91633872	G	A	SNP	C14orf159	ENST00000298858	human	ensembl	74_37	+1	known	missense	c.317	p.R106Q	0.000	NULL	NULL	-	no_errors	C14orf159	HGNC	ENSG00000133943				17	0	0	8	3	27.2727
GPR68	0	genome.wustl.edu	37	14	91700767	91700767	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	14	91700767	91700767	G	A	SNP	GPR68	ENST00000238699	human	ensembl	74_37	-1	known	missense	c.658	p.R220C	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_OGR1_rcpt,prints_GPCR_Rhodpsn,prints_Psych_rcpt	-	no_errors	GPR68	HGNC	ENSG00000119714				34	0	0	17	4	19.0476
FAM181A	0	genome.wustl.edu	37	14	94394712	94394712	+	Silent	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	14	94394712	94394712	G	A	SNP	FAM181A	ENST00000267594	human	ensembl	74_37	+1	known	silent	c.267	p.K89	1.000	NULL	NULL	-	no_errors	FAM181A	HGNC	ENSG00000140067				55	0	0	46	11	19.2982
SERPINA9	0	genome.wustl.edu	37	14	94933480	94933480	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	14	94933480	94933480	T	C	SNP	SERPINA9	ENST00000337425	human	ensembl	74_37	-1	known	missense	c.922	p.T308A	0.000	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINA9	HGNC	ENSG00000170054				90	0	0	70	13	15.6627
GSC	0	genome.wustl.edu	37	14	95234924	95234924	+	Silent	SNP	C	C	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	14	95234924	95234924	C	A	SNP	GSC	ENST00000238558	human	ensembl	74_37	-1	known	silent	c.678	p.S226	0.678	superfamily_Homeodomain-like	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	GSC	HGNC	ENSG00000133937				169	1	0.588235	159	30	15.873
WASH3P	0	genome.wustl.edu	37	15	102516611	102516611	+	RNA	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	15	102516611	102516611	C	T	SNP	WASH3P	ENST00000557932	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.010	-	-	-	no_errors	WASH3P	HGNC	ENSG00000185596				9	0	0	3	3	50
GOLGA8S	0	genome.wustl.edu	37	15	23610185	23610185	+	Silent	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	15	23610185	23610185	G	A	SNP	GOLGA8S	ENST00000562295	human	ensembl	74_37	+1	novel	silent	c.1782	p.Q594	0.942	NULL	NULL	-	no_errors	GOLGA8S	HGNC	ENSG00000261739				119	0	0	98	17	14.7826
NDN	0	genome.wustl.edu	37	15	23931740	23931740	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	15	23931740	23931740	C	T	SNP	NDN	ENST00000331837	human	ensembl	74_37	-1	known	missense	c.625	p.A209T	0.739	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfscan_MAGE	-	no_errors	NDN	HGNC	ENSG00000182636				62	0	0	37	6	13.9535
SNORD116-29	0	genome.wustl.edu	37	15	25351699	25351699	+	RNA	SNP	T	T	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	15	25351699	25351699	T	G	SNP	SNORD116-29	ENST00000384516	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.043	-	-	-	no_errors	SNORD116-29	HGNC	ENSG00000207245				86	0	0	69	7	9.21053
ATP10A	0	genome.wustl.edu	37	15	25926148	25926148	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	15	25926148	25926148	G	T	SNP	ATP10A	ENST00000356865	human	ensembl	74_37	-1	known	missense	c.3566	p.P1189H	1.000	tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP10A	HGNC	ENSG00000206190				85	0	0	69	9	11.5385
SLC12A6	0	genome.wustl.edu	37	15	34543198	34543198	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	15	34543198	34543198	G	T	SNP	SLC12A6	ENST00000558589	human	ensembl	74_37	-1	known	missense	c.1367	p.S456Y	1.000	tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease/SLC12A_dom,pfam_K/Cl_cotranspt_1/3,prints_KCL_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A6	HGNC	ENSG00000140199				75	0	0	68	15	18.0723
GCHFR	0	genome.wustl.edu	37	15	41059498	41059498	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	15	41059498	41059498	G	T	SNP	GCHFR	ENST00000260447	human	ensembl	74_37	+1	known	missense	c.206	p.S69I	1.000	pfam_GTP_CycHdrlase_I_reg,superfamily_GTP_CycHdrlase_I_reg	pfam_GTP_CycHdrlase_I_reg,superfamily_GTP_CycHdrlase_I_reg	-	no_errors	GCHFR	HGNC	ENSG00000137880				128	0	0	132	17	11.4094
VPS18	0	genome.wustl.edu	37	15	41192607	41192607	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	15	41192607	41192607	C	T	SNP	VPS18	ENST00000220509	human	ensembl	74_37	+1	known	missense	c.1591	p.R531C	1.000	superfamily_ARM-type_fold	pfam_Pep3_Vps18,pfam_Clathrin_H-chain/VPS_repeat,superfamily_ARM-type_fold	-	no_errors	VPS18	HGNC	ENSG00000104142				188	0	0	147	38	20.5405
MGA	0	genome.wustl.edu	37	15	42041014	42041014	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	15	42041014	42041014	A	G	SNP	MGA	ENST00000219905	human	ensembl	74_37	+1	known	missense	c.5392	p.M1798V	1.000	NULL	pfam_TF_T-box,pfam_bHLH_dom,superfamily_p53-like_TF_DNA-bd,superfamily_bHLH_dom,smart_TF_T-box,smart_bHLH_dom,pfscan_bHLH_dom,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	MGA	HGNC	ENSG00000174197				112	1	0.884956	78	20	20.4082
MAPKBP1	0	genome.wustl.edu	37	15	42110261	42110261	+	Silent	SNP	T	T	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	15	42110261	42110261	T	C	SNP	MAPKBP1	ENST00000456763	human	ensembl	74_37	+1	known	silent	c.1977	p.G659	0.998	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	MAPKBP1	HGNC	ENSG00000137802				168	1	0.591716	152	25	14.1243
PLA2G4D	0	genome.wustl.edu	37	15	42364044	42364044	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	15	42364044	42364044	G	A	SNP	PLA2G4D	ENST00000290472	human	ensembl	74_37	-1	known	missense	c.1501	p.L501F	1.000	pfam_LysoPLipase_cat_dom,superfamily_Acyl_Trfase/lysoPLipase,smart_LysoPLipase_cat_dom,pfscan_LysoPLipase_cat_dom	pfam_LysoPLipase_cat_dom,pfam_C2_dom,superfamily_Acyl_Trfase/lysoPLipase,superfamily_C2_dom,smart_C2_dom,smart_LysoPLipase_cat_dom,pfscan_C2_dom,pfscan_LysoPLipase_cat_dom	-	no_errors	PLA2G4D	HGNC	ENSG00000159337				57	0	0	60	5	7.69231
TMEM87A	0	genome.wustl.edu	37	15	42529648	42529648	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	15	42529648	42529648	G	A	SNP	TMEM87A	ENST00000389834	human	ensembl	74_37	-1	known	nonsense	c.850	p.R284*	1.000	pfam_TM_rcpt_euk	pfam_TM_rcpt_euk	-	no_errors	TMEM87A	HGNC	ENSG00000103978				76	0	0	57	13	18.5714
CDAN1	0	genome.wustl.edu	37	15	43025362	43025362	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	15	43025362	43025362	G	A	SNP	CDAN1	ENST00000356231	human	ensembl	74_37	-1	known	nonsense	c.1390	p.R464*	1.000	NULL	NULL	-	no_errors	CDAN1	HGNC	ENSG00000140326				109	1	0.909091	90	20	18.1818
ZSCAN29	0	genome.wustl.edu	37	15	43662097	43662097	+	Silent	SNP	T	T	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	15	43662097	43662097	T	C	SNP	ZSCAN29	ENST00000396976	human	ensembl	74_37	-1	known	silent	c.15	p.S5	0.962	NULL	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN29	HGNC	ENSG00000140265				107	0	0	118	21	15.1079
SLC28A2	0	genome.wustl.edu	37	15	45556153	45556153	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	15	45556153	45556153	T	C	SNP	SLC28A2	ENST00000347644	human	ensembl	74_37	+1	known	missense	c.521	p.L174P	1.000	tigrfam_C_nuclsd_transpt_met_bac	pfam_Nucleos_tra2_C,pfam_Nuclsd_transpt2,pfam_Nucleoside_recog_Gate,tigrfam_C_nuclsd_transpt_met_bac	-	no_errors	SLC28A2	HGNC	ENSG00000137860				121	0	0	92	21	18.5841
SPATA5L1	0	genome.wustl.edu	37	15	45706832	45706832	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	15	45706832	45706832	G	T	SNP	SPATA5L1	ENST00000305560	human	ensembl	74_37	+1	known	nonsense	c.1498	p.G500*	0.995	pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	SPATA5L1	HGNC	ENSG00000171763				67	0	0	56	18	24.3243
GLDN	0	genome.wustl.edu	37	15	51634172	51634172	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	15	51634172	51634172	C	T	SNP	GLDN	ENST00000335449	human	ensembl	74_37	+1	known	silent	c.291	p.S97	0.272	NULL	pfam_Olfac-like,pfam_Collagen,smart_Olfac-like,pfscan_Olfac-like	-	no_errors	GLDN	HGNC	ENSG00000186417				65	0	0	54	11	16.9231
MAPK6	0	genome.wustl.edu	37	15	52356198	52356198	+	Silent	SNP	T	T	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	15	52356198	52356198	T	C	SNP	MAPK6	ENST00000261845	human	ensembl	74_37	+1	known	silent	c.1167	p.T389	0.877	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_MAPK_ERK3/4	-	no_errors	MAPK6	HGNC	ENSG00000069956				70	0	0	69	14	16.8675
MYO5C	0	genome.wustl.edu	37	15	52564028	52564028	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	15	52564028	52564028	C	T	SNP	MYO5C	ENST00000261839	human	ensembl	74_37	-1	known	missense	c.764	p.R255Q	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Dil_domain,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_Dilute,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO5C	HGNC	ENSG00000128833				31	0	0	27	3	10
SLTM	0	genome.wustl.edu	37	15	59182562	59182562	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	15	59182562	59182562	C	T	SNP	SLTM	ENST00000380516	human	ensembl	74_37	-1	known	missense	c.1997	p.R666H	1.000	NULL	pfam_RRM_dom,pfam_SAP_dom,smart_SAP_dom,smart_RRM_dom,pfscan_SAP_dom,pfscan_RRM_dom	-	no_errors	SLTM	HGNC	ENSG00000137776				164	0	0	132	30	18.5185
ENSG00000225798	0	genome.wustl.edu	37	15	59186221	59186221	+	RNA	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	15	59186221	59186221	A	G	SNP	ENSG00000225798	ENST00000452467	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.016	-	-	-	no_errors	AC025918.2	Clone_based_vega_gene	ENSG00000225798				28	0	0	33	6	15.3846
ZNF609	0	genome.wustl.edu	37	15	64967127	64967127	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	15	64967127	64967127	G	A	SNP	ZNF609	ENST00000326648	human	ensembl	74_37	+1	known	missense	c.2074	p.A692T	1.000	NULL	pfscan_Znf_C2H2	-	no_errors	ZNF609	HGNC	ENSG00000180357				183	1	0.543478	138	41	22.905
RPL4	0	genome.wustl.edu	37	15	66792468	66792468	+	Silent	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	15	66792468	66792468	A	G	SNP	RPL4	ENST00000307961	human	ensembl	74_37	-1	known	silent	c.964	p.L322	0.999	NULL	pfam_Ribosomal_L4/L1e,superfamily_Ribosomal_L4_dom	-	no_errors	RPL4	HGNC	ENSG00000174444				89	0	0	86	8	8.51064
SKOR1	0	genome.wustl.edu	37	15	68118334	68118334	+	Silent	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	15	68118334	68118334	G	A	SNP	SKOR1	ENST00000380035	human	ensembl	74_37	+1	known	silent	c.168	p.S56	0.979	NULL	pfam_Transform_Ski,pfam_c-SKI_SMAD4-bd_dom,superfamily_DNA-bd_dom_put,superfamily_SAND_dom-like	-	no_errors	SKOR1	HGNC	ENSG00000188779				79	0	0	60	12	16.6667
CORO2B	0	genome.wustl.edu	37	15	68987583	68987583	+	Silent	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	15	68987583	68987583	G	A	SNP	CORO2B	ENST00000566799	human	ensembl	74_37	+1	known	silent	c.321	p.S107	0.001	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_DUF1900,pfam_DUF1899,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CORO2B	HGNC	ENSG00000103647				114	0	0	89	18	16.8224
SPESP1	0	genome.wustl.edu	37	15	69238906	69238906	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	15	69238906	69238906	G	A	SNP	SPESP1	ENST00000310673	human	ensembl	74_37	+1	known	missense	c.1033	p.A345T	0.000	NULL	NULL	-	no_errors	SPESP1	HGNC	ENSG00000258484				51	0	0	34	9	20.9302
UACA	0	genome.wustl.edu	37	15	70960670	70960670	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	15	70960670	70960670	A	T	SNP	UACA	ENST00000322954	human	ensembl	74_37	-1	known	missense	c.2353	p.L785M	0.950	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_Prefoldin,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_T_SNARE_dom,prints_Ankyrin_rpt	-	no_errors	UACA	HGNC	ENSG00000137831				60	0	0	55	14	20.2899
CSPG4	0	genome.wustl.edu	37	15	75979694	75979694	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	15	75979694	75979694	G	T	SNP	CSPG4	ENST00000308508	human	ensembl	74_37	-1	known	missense	c.3712	p.P1238T	0.478	NULL	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	-	no_errors	CSPG4	HGNC	ENSG00000173546				131	0	0	102	10	8.92857
LINGO1	0	genome.wustl.edu	37	15	77907861	77907861	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	15	77907861	77907861	G	A	SNP	LINGO1	ENST00000355300	human	ensembl	74_37	-1	known	missense	c.388	p.R130C	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_Ig_I-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LINGO1	HGNC	ENSG00000169783				52	0	0	39	3	7.14286
CSPG4P13	0	genome.wustl.edu	37	15	78196396	78196396	+	RNA	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	15	78196396	78196396	G	A	SNP	CSPG4P13	ENST00000565545	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.990	-	-	-	no_errors	CSPG4P13	HGNC	ENSG00000260139				22	0	0	20	5	20
C15orf26	0	genome.wustl.edu	37	15	81428869	81428869	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	15	81428869	81428869	G	A	SNP	C15orf26	ENST00000286732	human	ensembl	74_37	+1	known	missense	c.172	p.V58I	0.000	NULL	NULL	-	no_errors	C15orf26	HGNC	ENSG00000156206				66	0	0	50	9	15.2542
EFTUD1P1	0	genome.wustl.edu	37	15	84782442	84782442	+	RNA	SNP	C	C	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	15	84782442	84782442	C	A	SNP	EFTUD1P1	ENST00000560381	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	EFTUD1P1	HGNC	ENSG00000259404				163	0	0	133	30	18.4049
TICRR	0	genome.wustl.edu	37	15	90159667	90159667	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	15	90159667	90159667	C	T	SNP	TICRR	ENST00000268138	human	ensembl	74_37	+1	known	silent	c.2901	p.A967	0.864	NULL	NULL	-	no_errors	TICRR	HGNC	ENSG00000140534				54	0	0	46	6	11.5385
SLCO3A1	0	genome.wustl.edu	37	15	92706126	92706126	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	15	92706126	92706126	G	A	SNP	SLCO3A1	ENST00000318445	human	ensembl	74_37	+1	known	missense	c.1894	p.A632T	1.000	superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal_dom,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	-	no_errors	SLCO3A1	HGNC	ENSG00000176463				96	0	0	72	19	20.8791
MCTP2	0	genome.wustl.edu	37	15	94901754	94901754	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	15	94901754	94901754	A	T	SNP	MCTP2	ENST00000357742	human	ensembl	74_37	+1	known	missense	c.1214	p.D405V	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_C2_dom,pfam_PRibTrfase_C,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	MCTP2	HGNC	ENSG00000140563				58	0	0	57	4	6.55738
TEKT5	0	genome.wustl.edu	37	16	10788315	10788315	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	16	10788315	10788315	C	T	SNP	TEKT5	ENST00000283025	human	ensembl	74_37	-1	known	missense	c.416	p.R139Q	1.000	pfam_Tektin	pfam_Tektin,prints_Tektin	-	no_errors	TEKT5	HGNC	ENSG00000153060				241	1	0.413223	202	34	14.4068
CLEC16A	0	genome.wustl.edu	37	16	11219940	11219940	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	16	11219940	11219940	C	T	SNP	CLEC16A	ENST00000409790	human	ensembl	74_37	+1	known	missense	c.2578	p.R860C	1.000	NULL	pfam_Uncharacterised_FPL	-	no_errors	CLEC16A	HGNC	ENSG00000038532				217	0	0	200	12	5.66038
TXNDC11	0	genome.wustl.edu	37	16	11785786	11785786	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	16	11785786	11785786	C	T	SNP	TXNDC11	ENST00000356957	human	ensembl	74_37	-1	known	silent	c.1341	p.A447	0.000	NULL	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	-	no_errors	TXNDC11	HGNC	ENSG00000153066				70	0	0	73	13	15.1163
RSL1D1	0	genome.wustl.edu	37	16	11931765	11931765	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	16	11931765	11931765	G	A	SNP	RSL1D1	ENST00000571133	human	ensembl	74_37	-1	known	missense	c.1352	p.A451V	0.069	NULL	pfam_Ribosomal_L1/biogenesis,superfamily_Ribosomal_L1-like	-	no_errors	RSL1D1	HGNC	ENSG00000171490				486	1	0.205339	412	77	15.7464
CRAMP1L	0	genome.wustl.edu	37	16	1705981	1705981	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	16	1705981	1705981	C	T	SNP	CRAMP1L	ENST00000293925	human	ensembl	74_37	+1	known	missense	c.1223	p.P408L	0.970	NULL	superfamily_Homeodomain-like,smart_SANT/Myb	-	no_errors	CRAMP1L	HGNC	ENSG00000007545				61	0	0	39	8	17.0213
CDR2	0	genome.wustl.edu	37	16	22359037	22359037	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	16	22359037	22359037	A	G	SNP	CDR2	ENST00000268383	human	ensembl	74_37	-1	known	missense	c.614	p.L205S	0.996	NULL	NULL	-	no_errors	CDR2	HGNC	ENSG00000140743				232	0	0	173	38	18.0095
HS3ST2	0	genome.wustl.edu	37	16	22825981	22825981	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	16	22825981	22825981	C	T	SNP	HS3ST2	ENST00000261374	human	ensembl	74_37	+1	known	missense	c.50	p.A17V	1.000	NULL	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	HS3ST2	HGNC	ENSG00000122254				12	0	0	7	5	41.6667
PLK1	0	genome.wustl.edu	37	16	23695280	23695280	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	16	23695280	23695280	C	T	SNP	PLK1	ENST00000300093	human	ensembl	74_37	+1	known	silent	c.906	p.D302	0.993	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_POLO_box_duplicated_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_POLO_box_duplicated_dom,pfscan_Prot_kinase_dom	-	no_errors	PLK1	HGNC	ENSG00000166851				386	0	0	299	52	14.8148
PRKCB	0	genome.wustl.edu	37	16	23847645	23847645	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	16	23847645	23847645	G	T	SNP	PRKCB	ENST00000303531	human	ensembl	74_37	+1	known	missense	c.149	p.C50F	1.000	pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,pirsf_Protein_kinase_C_a/b/g,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_DAG/PE-bd	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_C2_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Protein_kinase_C_a/b/g,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_DAG/PE-bd,prints_C2_dom	-	no_errors	PRKCB	HGNC	ENSG00000166501				157	0	0	132	17	11.4094
CACNG3	0	genome.wustl.edu	37	16	24372780	24372780	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	16	24372780	24372780	G	A	SNP	CACNG3	ENST00000005284	human	ensembl	74_37	+1	known	missense	c.544	p.G182R	1.000	pfam_PMP22/EMP/MP20/Claudin,prints_VDCC_gsu	pfam_PMP22/EMP/MP20/Claudin,prints_VDCC_gsu	-	no_errors	CACNG3	HGNC	ENSG00000006116				197	0	0	173	22	11.2821
AQP8	0	genome.wustl.edu	37	16	25232874	25232874	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	16	25232874	25232874	C	T	SNP	AQP8	ENST00000219660	human	ensembl	74_37	+1	known	silent	c.357	p.L119	0.705	pfam_MIP,superfamily_Aquaporin-like,prints_MIP	pfam_MIP,superfamily_Aquaporin-like,prints_Aquaporin_8,prints_MIP	-	no_errors	AQP8	HGNC	ENSG00000103375				116	0	0	118	20	14.4928
CEMP1	0	genome.wustl.edu	37	16	2581057	2581057	+	Silent	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	16	2581057	2581057	A	G	SNP	CEMP1	ENST00000382350	human	ensembl	74_37	-1	known	silent	c.18	p.T6	0.000	NULL	NULL	-	no_errors	CEMP1	HGNC	ENSG00000205923				61	0	0	43	6	12.2449
SH2B1	0	genome.wustl.edu	37	16	28877939	28877939	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	16	28877939	28877939	C	T	SNP	SH2B1	ENST00000322610	human	ensembl	74_37	+1	known	missense	c.524	p.T175I	0.002	NULL	pfam_Phe_ZIP,pfam_Pleckstrin_homology,pfam_SH2,superfamily_Phe_ZIP,smart_Pleckstrin_homology,smart_SH2,pfscan_SH2,prints_SH2	-	no_errors	SH2B1	HGNC	ENSG00000178188				92	0	0	70	12	14.6341
PPP4C	0	genome.wustl.edu	37	16	30096003	30096003	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	16	30096003	30096003	C	T	SNP	PPP4C	ENST00000279387	human	ensembl	74_37	+1	known	silent	c.621	p.G207	0.008	pfam_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase	pfam_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase,prints_Ser/Thr-sp_prot-phosphatase	-	no_errors	PPP4C	HGNC	ENSG00000149923				151	0	0	118	18	13.2353
PPP4C	0	genome.wustl.edu	37	16	30096284	30096284	+	Silent	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	16	30096284	30096284	G	A	SNP	PPP4C	ENST00000279387	human	ensembl	74_37	+1	known	silent	c.825	p.L275	1.000	smart_Ser/Thr-sp_prot-phosphatase	pfam_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase,prints_Ser/Thr-sp_prot-phosphatase	-	no_errors	PPP4C	HGNC	ENSG00000149923				135	0	0	109	22	16.7939
TBX6	0	genome.wustl.edu	37	16	30097873	30097873	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	16	30097873	30097873	G	T	SNP	TBX6	ENST00000279386	human	ensembl	74_37	-1	known	missense	c.1057	p.P353T	1.000	NULL	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box,prints_TF_Brachyury	-	no_errors	TBX6	HGNC	ENSG00000149922				10	0	0	7	3	30
DCTPP1	0	genome.wustl.edu	37	16	30435737	30435737	+	Silent	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	16	30435737	30435737	G	A	SNP	DCTPP1	ENST00000319285	human	ensembl	74_37	-1	known	silent	c.330	p.C110	1.000	pfam_MazG_cat	pfam_MazG_cat,pfscan_EAR	-	no_errors	DCTPP1	HGNC	ENSG00000179958				74	0	0	47	12	20.339
ITGAL	0	genome.wustl.edu	37	16	30529992	30529992	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	16	30529992	30529992	C	T	SNP	ITGAL	ENST00000356798	human	ensembl	74_37	+1	known	silent	c.3180	p.N1060	0.929	NULL	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,smart_VWF_A,prints_Integrin_alpha,pfscan_VWF_A	-	no_errors	ITGAL	HGNC	ENSG00000005844				92	0	0	60	8	11.7647
PRR14	0	genome.wustl.edu	37	16	30663120	30663120	+	Silent	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	16	30663120	30663120	G	A	SNP	PRR14	ENST00000300835	human	ensembl	74_37	+1	known	silent	c.27	p.P9	0.000	NULL	NULL	-	no_errors	PRR14	HGNC	ENSG00000156858				158	0	0	121	18	12.9496
ITGAX	0	genome.wustl.edu	37	16	31374258	31374258	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	16	31374258	31374258	C	T	SNP	ITGAX	ENST00000268296	human	ensembl	74_37	+1	known	silent	c.1362	p.I454	0.934	smart_Int_alpha_beta-p,prints_Integrin_alpha	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGAX	HGNC	ENSG00000140678				157	0	0	130	39	23.0769
SLC6A10P	0	genome.wustl.edu	37	16	32891823	32891823	+	RNA	SNP	G	G	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	16	32891823	32891823	G	T	SNP	SLC6A10P	ENST00000330048	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SLC6A10P	HGNC	ENSG00000214617				25	0	0	16	4	20
TIGD7	0	genome.wustl.edu	37	16	3350127	3350127	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	16	3350127	3350127	A	G	SNP	TIGD7	ENST00000268674	human	ensembl	74_37	-1	known	missense	c.488	p.I163T	0.224	NULL	pfam_DDE_SF_endonuclease_CENPB-like,pfam_HTH_CenpB_DNA-bd_dom,pfam_HTH_Psq,superfamily_Homeodomain-like,smart_HTH_CenpB_DNA-bd_dom,pfscan_HTH_Psq	-	no_errors	TIGD7	HGNC	ENSG00000140993				203	0	0	170	28	14.1414
NLRC3	0	genome.wustl.edu	37	16	3614999	3614999	+	Silent	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	16	3614999	3614999	G	A	SNP	NLRC3	ENST00000448023	human	ensembl	74_37	-1	known	silent	c.180	p.G60	0.019	NULL	superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase	-	no_errors	NLRC3	HGNC	ENSG00000167984				37	0	0	25	14	35.8974
MRPL28	0	genome.wustl.edu	37	16	419103	419103	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	16	419103	419103	C	T	SNP	MRPL28	ENST00000199706	human	ensembl	74_37	-1	known	missense	c.406	p.D136N	1.000	NULL	NULL	-	no_errors	MRPL28	HGNC	ENSG00000086504				60	0	0	48	10	17.2414
ORC6	0	genome.wustl.edu	37	16	46723639	46723639	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	16	46723639	46723639	C	T	SNP	ORC6	ENST00000219097	human	ensembl	74_37	+1	known	missense	c.22	p.R8C	0.001	pfam_ORC6	pfam_ORC6	-	no_errors	ORC6	HGNC	ENSG00000091651				17	0	0	19	3	13.6364
C16orf71	0	genome.wustl.edu	37	16	4786531	4786531	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	16	4786531	4786531	A	G	SNP	C16orf71	ENST00000299320	human	ensembl	74_37	+1	known	missense	c.16	p.K6E	0.056	NULL	NULL	-	no_errors	C16orf71	HGNC	ENSG00000166246				81	0	0	55	6	9.83607
ABCC11	0	genome.wustl.edu	37	16	48201547	48201547	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	16	48201547	48201547	C	A	SNP	ABCC11	ENST00000356608	human	ensembl	74_37	-1	known	missense	c.3916	p.A1306S	1.000	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCC11	HGNC	ENSG00000121270				234	0	0	174	27	13.4328
SEPT12	0	genome.wustl.edu	37	16	4833442	4833442	+	Silent	SNP	T	T	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	16	4833442	4833442	T	C	SNP	SEPT12	ENST00000587603	human	ensembl	74_37	-1	known	silent	c.747	p.G249	0.013	pirsf_Septin	pfam_Cell_div_GTP-bd,pfam_AIG1,pfam_Cell_div_FtsK/SpoIIIE,superfamily_P-loop_NTPase,pirsf_Septin	-	no_errors	SEPT12	HGNC	ENSG00000140623				113	0	0	88	13	12.8713
PPL	0	genome.wustl.edu	37	16	4934623	4934623	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	16	4934623	4934623	G	A	SNP	PPL	ENST00000345988	human	ensembl	74_37	-1	known	missense	c.4033	p.R1345W	0.983	NULL	pfam_Plectin_repeat,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	PPL	HGNC	ENSG00000118898				390	2	0.510204	286	78	21.4286
CHD9	0	genome.wustl.edu	37	16	53243646	53243646	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	16	53243646	53243646	A	T	SNP	CHD9	ENST00000398510	human	ensembl	74_37	+1	known	missense	c.1705	p.R569W	1.000	NULL	pfam_SNF2_N,pfam_BRK_domain,pfam_Chromo_domain,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD9	HGNC	ENSG00000177200				50	0	0	24	8	25
FTO	0	genome.wustl.edu	37	16	53859941	53859941	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	16	53859941	53859941	A	G	SNP	FTO	ENST00000471389	human	ensembl	74_37	+1	known	missense	c.289	p.I97V	1.000	NULL	NULL	-	no_errors	FTO	HGNC	ENSG00000140718				116	0	0	93	21	18.4211
CES1	0	genome.wustl.edu	37	16	55857555	55857555	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	16	55857555	55857555	G	A	SNP	CES1	ENST00000360526	human	ensembl	74_37	-1	known	missense	c.446	p.A149V	0.000	pfam_CarbesteraseB,pfam_AB_hydrolase_3	pfam_CarbesteraseB,pfam_AB_hydrolase_3	-	no_errors	CES1	HGNC	ENSG00000198848				106	1	0.934579	72	4	5.26316
GPR56	0	genome.wustl.edu	37	16	57694771	57694771	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	16	57694771	57694771	C	T	SNP	GPR56	ENST00000379696	human	ensembl	74_37	+1	known	silent	c.1665	p.G555	0.001	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_secretin-like,pfam_GPS_dom,smart_GPS_dom,prints_GPCR_2_orphan_rcpt_GPR56,prints_GPCR_2_secretin-like,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR56	HGNC	ENSG00000205336				33	0	0	30	3	9.09091
CDH5	0	genome.wustl.edu	37	16	66436970	66436970	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	16	66436970	66436970	C	T	SNP	CDH5	ENST00000341529	human	ensembl	74_37	+1	known	silent	c.2253	p.S751	0.347	pfam_Cadherin_cytoplasmic-dom	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH5	HGNC	ENSG00000179776				44	0	0	22	10	31.25
CES3	0	genome.wustl.edu	37	16	66997277	66997277	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	16	66997277	66997277	C	T	SNP	CES3	ENST00000303334	human	ensembl	74_37	+1	known	missense	c.278	p.A93V	0.000	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3	-	no_errors	CES3	HGNC	ENSG00000172828				110	0	0	75	12	13.7931
CES4A	0	genome.wustl.edu	37	16	67043039	67043039	+	Silent	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	16	67043039	67043039	A	G	SNP	CES4A	ENST00000326686	human	ensembl	74_37	+1	known	silent	c.1680	p.Q560	0.000	NULL	pfam_CarbesteraseB,pfam_AB_hydrolase_3	-	no_errors	CES4A	HGNC	ENSG00000172824				178	0	0	142	31	17.9191
HSF4	0	genome.wustl.edu	37	16	67199648	67199648	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	16	67199648	67199648	G	A	SNP	HSF4	ENST00000264009	human	ensembl	74_37	+1	known	missense	c.259	p.E87K	1.000	pfam_HSF_DNA-bd,smart_HSF_DNA-bd	pfam_HSF_DNA-bd,smart_HSF_DNA-bd,prints_HSF_DNA-bd	-	no_errors	HSF4	HGNC	ENSG00000102878				58	0	0	36	3	7.69231
FHOD1	0	genome.wustl.edu	37	16	67265195	67265195	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	16	67265195	67265195	G	A	SNP	FHOD1	ENST00000258201	human	ensembl	74_37	-1	known	missense	c.2563	p.R855C	1.000	pfam_FH2_Formin,smart_FH2_Formin	pfam_FH2_Formin,superfamily_ARM-type_fold,smart_FH2_Formin	-	no_errors	FHOD1	HGNC	ENSG00000135723				72	0	0	52	6	10.3448
FHOD1	0	genome.wustl.edu	37	16	67271645	67271645	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	16	67271645	67271645	C	T	SNP	FHOD1	ENST00000258201	human	ensembl	74_37	-1	known	silent	c.669	p.L223	1.000	superfamily_ARM-type_fold	pfam_FH2_Formin,superfamily_ARM-type_fold,smart_FH2_Formin	-	no_errors	FHOD1	HGNC	ENSG00000135723				102	0	0	61	14	18.6667
PLEKHG4	0	genome.wustl.edu	37	16	67318714	67318714	+	Silent	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	16	67318714	67318714	G	A	SNP	PLEKHG4	ENST00000360461	human	ensembl	74_37	+1	known	silent	c.1791	p.R597	0.992	NULL	pfam_DH-domain,superfamily_DH-domain,superfamily_CRAL-TRIO_dom,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG4	HGNC	ENSG00000196155				34	0	0	34	4	10.5263
SLC12A4	0	genome.wustl.edu	37	16	67980958	67980958	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	16	67980958	67980958	T	C	SNP	SLC12A4	ENST00000422611	human	ensembl	74_37	-1	known	missense	c.2129	p.Y710C	1.000	tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease/SLC12A_dom,pfam_K/Cl_cotranspt_1/3,prints_KCL_cotranspt,prints_K/Cl_cotranspt1,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A4	HGNC	ENSG00000124067				32	0	0	19	2	9.52381
ZFHX3	0	genome.wustl.edu	37	16	72845891	72845891	+	Silent	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	16	72845891	72845891	G	A	SNP	ZFHX3	ENST00000268489	human	ensembl	74_37	-1	known	silent	c.3576	p.T1192	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX3	HGNC	ENSG00000140836				152	0	0	103	23	18.254
CHST6	0	genome.wustl.edu	37	16	75512732	75512732	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	16	75512732	75512732	G	T	SNP	CHST6	ENST00000332272	human	ensembl	74_37	-1	known	missense	c.995	p.A332D	1.000	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,pirsf_Carbohydrate_sulfotransferase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,pirsf_Carbohydrate_sulfotransferase	-	no_errors	CHST6	HGNC	ENSG00000183196				91	0	0	81	16	16.4948
CHST5	0	genome.wustl.edu	37	16	75563452	75563452	+	Silent	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	16	75563452	75563452	G	A	SNP	CHST5	ENST00000541075	human	ensembl	74_37	-1	known	silent	c.849	p.A283	0.311	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,pirsf_Carbohydrate_sulfotransferase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,pirsf_Carbohydrate_sulfotransferase	-	no_errors	CHST5	HGNC	ENSG00000135702				118	0	0	89	16	15.2381
NARFL	0	genome.wustl.edu	37	16	780438	780438	+	Silent	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	16	780438	780438	A	G	SNP	NARFL	ENST00000251588	human	ensembl	74_37	-1	known	silent	c.1410	p.T470	0.282	NULL	pfam_Fe_hydrogenase_lsu_C,pfam_Fe_hydrogenase_ssu-like,superfamily_Fe_hydrogenase,smart_Fe_hydrogenase_ssu-like	-	no_errors	NARFL	HGNC	ENSG00000103245				95	0	0	104	14	11.8644
MAF	0	genome.wustl.edu	37	16	79633683	79633683	+	Silent	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	16	79633683	79633683	G	A	SNP	MAF	ENST00000326043	human	ensembl	74_37	-1	known	silent	c.117	p.T39	1.000	NULL	pfam_bZIP_Maf,pfam_Maf_TF_N,superfamily_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	MAF	HGNC	ENSG00000178573				68	0	0	45	9	16.6667
ACSF3	0	genome.wustl.edu	37	16	89169086	89169086	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	16	89169086	89169086	C	T	SNP	ACSF3	ENST00000317447	human	ensembl	74_37	+1	known	silent	c.741	p.V247	0.990	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSF3	HGNC	ENSG00000176715				71	0	0	58	9	13.4328
GAS8	0	genome.wustl.edu	37	16	90108829	90108829	+	RNA	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	16	90108829	90108829	C	T	SNP	GAS8	ENST00000540721	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	GAS8	HGNC	ENSG00000141013				34	0	0	31	2	6.06061
POLR3K	0	genome.wustl.edu	37	16	97531	97531	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	16	97531	97531	G	A	SNP	POLR3K	ENST00000293860	human	ensembl	74_37	-1	known	missense	c.226	p.R76C	0.998	pfam_Znf_TFIIS,smart_Znf_TFIIS,pfscan_Znf_TFIIS	pfam_Znf_TFIIS,pfam_DNA-dir_RNA_pol_M/15kDasu,smart_DNA-dir_RNA_pol_M/15kDasu,smart_Znf_TFIIS,pfscan_Znf_TFIIS	-	no_errors	POLR3K	HGNC	ENSG00000161980				73	0	0	47	11	18.9655
SCARF1	0	genome.wustl.edu	37	17	1538421	1538421	+	Silent	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	17	1538421	1538421	G	A	SNP	SCARF1	ENST00000263071	human	ensembl	74_37	-1	known	silent	c.2124	p.V708	0.985	NULL	pfam_EGF_laminin,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,pfscan_EG-like_dom	-	no_errors	SCARF1	HGNC	ENSG00000074660				80	0	0	45	10	18.1818
TVP23C	0	genome.wustl.edu	37	17	15441469	15441469	+	Splice_Site	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	17	15441469	15441469	C	T	SNP	TVP23C	ENST00000523573	human	ensembl	74_37	-1	known	splice_site	c.162-2	e5-2	0.998	-	-	-	no_errors	TVP23C	HGNC	ENSG00000175106				98	0	0	92	12	11.5385
SERPINF2	0	genome.wustl.edu	37	17	1649113	1649113	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	17	1649113	1649113	C	A	SNP	SERPINF2	ENST00000324015	human	ensembl	74_37	+1	known	missense	c.277	p.L93M	1.000	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINF2	HGNC	ENSG00000167711				156	0	0	106	22	17.1875
TNFRSF13B	0	genome.wustl.edu	37	17	16843050	16843050	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	17	16843050	16843050	G	T	SNP	TNFRSF13B	ENST00000261652	human	ensembl	74_37	-1	known	missense	c.693	p.S231R	1.000	prints_TNFR_13B	pfam_TACI_Cys-rich-dom,prints_TNFR_13B	-	no_errors	TNFRSF13B	HGNC	ENSG00000240505				54	0	0	45	15	25
RAI1	0	genome.wustl.edu	37	17	17700556	17700556	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	17	17700556	17700556	C	A	SNP	RAI1	ENST00000353383	human	ensembl	74_37	+1	known	missense	c.4294	p.P1432T	0.969	NULL	smart_Znf_PHD	-	no_errors	RAI1	HGNC	ENSG00000108557				92	0	0	67	8	10.6667
LRRC48	0	genome.wustl.edu	37	17	17896209	17896209	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	17	17896209	17896209	G	A	SNP	LRRC48	ENST00000313838	human	ensembl	74_37	+1	known	missense	c.575	p.R192H	0.996	NULL	NULL	-	no_errors	LRRC48	HGNC	ENSG00000171962				87	0	0	64	5	7.24638
MYO15A	0	genome.wustl.edu	37	17	18022183	18022183	+	Silent	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	17	18022183	18022183	G	A	SNP	MYO15A	ENST00000205890	human	ensembl	74_37	+1	known	silent	c.69	p.P23	0.067	NULL	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_SH3_2,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_SH3_domain,smart_Band_41_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO15A	HGNC	ENSG00000091536				39	0	0	24	8	25
RTN4RL1	0	genome.wustl.edu	37	17	1840945	1840945	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	17	1840945	1840945	C	T	SNP	RTN4RL1	ENST00000331238	human	ensembl	74_37	-1	known	silent	c.171	p.E57	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	RTN4RL1	HGNC	ENSG00000185924				41	0	0	33	7	17.5
MAPK7	0	genome.wustl.edu	37	17	19284193	19284193	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	17	19284193	19284193	C	T	SNP	MAPK7	ENST00000308406	human	ensembl	74_37	+1	known	missense	c.671	p.T224M	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAPK7	HGNC	ENSG00000166484				45	0	0	23	4	14.8148
SLC13A2	0	genome.wustl.edu	37	17	26816239	26816239	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	17	26816239	26816239	A	G	SNP	SLC13A2	ENST00000444914	human	ensembl	74_37	+1	known	missense	c.110	p.Y37C	0.670	pfam_Na/sul_symport	pfam_Na/sul_symport,pfam_Cit_transptr-like_dom	-	no_errors	SLC13A2	HGNC	ENSG00000007216				94	0	0	79	16	16.8421
ALDOC	0	genome.wustl.edu	37	17	26900833	26900833	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	17	26900833	26900833	G	T	SNP	ALDOC	ENST00000226253	human	ensembl	74_37	-1	known	missense	c.919	p.Q307K	1.000	pfam_Aldolase_I	pfam_Aldolase_I	-	no_errors	ALDOC	HGNC	ENSG00000109107				155	1	0.641026	105	27	20.4545
SUPT6H	0	genome.wustl.edu	37	17	27008285	27008285	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	17	27008285	27008285	T	A	SNP	SUPT6H	ENST00000314616	human	ensembl	74_37	+1	known	missense	c.1361	p.V454D	1.000	pirsf_TF_Spt6	pfam_Rbsml_prot_S1_RNA-bd_dom,pfam_SH2,superfamily_NA-bd_OB-fold,smart_YqgF/RNaseH-like_dom,smart_RNA-binding_domain_S1,smart_SH2,pirsf_TF_Spt6,pfscan_SH2,pfscan_Rbsml_prot_S1_RNA-bd_dom	-	no_errors	SUPT6H	HGNC	ENSG00000109111				111	0	0	114	7	5.78512
GIT1	0	genome.wustl.edu	37	17	27905345	27905345	+	Silent	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	17	27905345	27905345	G	A	SNP	GIT1	ENST00000394869	human	ensembl	74_37	-1	known	silent	c.882	p.D294	0.191	pfam_GIT_SHD,smart_GIT_SHD	pfam_GIT1_C,pfam_GIT_SHD,pfam_ArfGAP,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_ArfGAP,smart_Ankyrin_rpt,smart_GIT_SHD,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	GIT1	HGNC	ENSG00000108262				119	0	0	109	21	16.1538
NSRP1	0	genome.wustl.edu	37	17	28511844	28511844	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	17	28511844	28511844	G	A	SNP	NSRP1	ENST00000247026	human	ensembl	74_37	+1	known	missense	c.829	p.E277K	0.000	NULL	pfam_DUF2040	-	no_errors	NSRP1	HGNC	ENSG00000126653				47	0	0	33	13	28.2609
ENSG00000214719	0	genome.wustl.edu	37	17	28961033	28961033	+	RNA	SNP	T	T	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	17	28961033	28961033	T	G	SNP	ENSG00000214719	ENST00000398849	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.997	-	-	-	no_errors	AC005562.1	Clone_based_vega_gene	ENSG00000214719				30	0	0	36	4	10
CDK5R1	0	genome.wustl.edu	37	17	30814811	30814811	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	17	30814811	30814811	T	C	SNP	CDK5R1	ENST00000313401	human	ensembl	74_37	+1	known	missense	c.173	p.V58A	1.000	pfam_CDK5_activator,pirsf_CDK5_activator	pfam_CDK5_activator,superfamily_Cyclin-like,pirsf_CDK5_activator	-	no_errors	CDK5R1	HGNC	ENSG00000176749				108	1	0.917431	97	18	15.6522
UNC45B	0	genome.wustl.edu	37	17	33497136	33497136	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	17	33497136	33497136	G	A	SNP	UNC45B	ENST00000268876	human	ensembl	74_37	+1	known	nonsense	c.1551	p.W517*	1.000	superfamily_ARM-type_fold	pfam_UNC-45/Ring3,superfamily_ARM-type_fold,smart_TPR_repeat,smart_Armadillo,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	UNC45B	HGNC	ENSG00000141161				167	0	0	124	35	22.0126
SYNRG	0	genome.wustl.edu	37	17	35937667	35937667	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	17	35937667	35937667	T	C	SNP	SYNRG	ENST00000339208	human	ensembl	74_37	-1	known	missense	c.634	p.T212A	1.000	NULL	smart_EPS15_homology,pfscan_EPS15_homology	-	no_errors	SYNRG	HGNC	ENSG00000006114				193	0	0	151	25	14.2045
PLXDC1	0	genome.wustl.edu	37	17	37226124	37226124	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	17	37226124	37226124	C	T	SNP	PLXDC1	ENST00000315392	human	ensembl	74_37	-1	known	silent	c.1368	p.A456	0.013	NULL	pfam_Plexin_repeat,superfamily_Plexin-like_fold	-	no_errors	PLXDC1	HGNC	ENSG00000161381				89	0	0	69	15	17.8571
PLXDC1	0	genome.wustl.edu	37	17	37243922	37243922	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	17	37243922	37243922	C	T	SNP	PLXDC1	ENST00000315392	human	ensembl	74_37	-1	known	missense	c.845	p.R282H	0.996	NULL	pfam_Plexin_repeat,superfamily_Plexin-like_fold	-	no_errors	PLXDC1	HGNC	ENSG00000161381				43	0	0	40	10	20
ERBB2	0	genome.wustl.edu	37	17	37866359	37866359	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	17	37866359	37866359	G	T	SNP	ERBB2	ENST00000269571	human	ensembl	74_37	+1	known	missense	c.664	p.G222C	0.311	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Furin-like_Cys-rich_dom,superfamily_Growth_fac_rcpt_N_dom	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	ERBB2	HGNC	ENSG00000141736				119	1	0.833333	107	22	17.0543
GRB7	0	genome.wustl.edu	37	17	37902012	37902012	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	17	37902012	37902012	T	C	SNP	GRB7	ENST00000445327	human	ensembl	74_37	+1	known	missense	c.1310	p.M437T	0.983	NULL	pfam_BPS-dom,pfam_SH2,pfam_Ras-assoc,pfam_Pleckstrin_homology,smart_Ras-assoc,smart_Pleckstrin_homology,smart_SH2,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SH2,prints_SH2	-	no_errors	GRB7	HGNC	ENSG00000141738				112	1	0.884956	88	17	16.1905
GSDMA	0	genome.wustl.edu	37	17	38126776	38126776	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	17	38126776	38126776	A	C	SNP	GSDMA	ENST00000301659	human	ensembl	74_37	+1	known	missense	c.434	p.D145A	0.000	pfam_Gasdermin	pfam_Gasdermin	-	no_errors	GSDMA	HGNC	ENSG00000167914				42	0	0	30	4	11.7647
NR1D1	0	genome.wustl.edu	37	17	38252191	38252191	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	17	38252191	38252191	G	T	SNP	NR1D1	ENST00000246672	human	ensembl	74_37	-1	known	missense	c.754	p.P252T	1.000	NULL	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	NR1D1	HGNC	ENSG00000126368				31	0	0	30	5	14.2857
ATP2A3	0	genome.wustl.edu	37	17	3833644	3833644	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	17	3833644	3833644	T	C	SNP	ATP2A3	ENST00000359983	human	ensembl	74_37	-1	known	missense	c.2695	p.M899V	1.000	pfam_ATPase_P-typ_cation-transptr_C	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_IIA,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP2A3	HGNC	ENSG00000074370				33	0	0	31	7	18.4211
KRT13	0	genome.wustl.edu	37	17	39661394	39661394	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	17	39661394	39661394	G	A	SNP	KRT13	ENST00000246635	human	ensembl	74_37	-1	known	missense	c.409	p.R137C	1.000	pfam_IF	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT13	HGNC	ENSG00000171401				158	0	0	110	23	17.2932
JUP	0	genome.wustl.edu	37	17	39925887	39925887	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	17	39925887	39925887	C	T	SNP	JUP	ENST00000310706	human	ensembl	74_37	-1	known	missense	c.251	p.R84Q	1.000	prints_Beta-catenin	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo,prints_Beta-catenin	-	no_errors	JUP	HGNC	ENSG00000173801				34	0	0	27	3	10
STAT5B	0	genome.wustl.edu	37	17	40362289	40362289	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	17	40362289	40362289	C	A	SNP	STAT5B	ENST00000293328	human	ensembl	74_37	-1	known	missense	c.1806	p.Q602H	1.000	pfam_SH2,smart_SH2,pfscan_SH2	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,smart_SH2,pfscan_SH2	-	no_errors	STAT5B	HGNC	ENSG00000173757				96	0	0	84	15	15.1515
GRN	0	genome.wustl.edu	37	17	42430105	42430105	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	17	42430105	42430105	G	A	SNP	GRN	ENST00000053867	human	ensembl	74_37	+1	known	missense	c.1721	p.R574H	0.000	NULL	pfam_Granulin,smart_Granulin	-	no_errors	GRN	HGNC	ENSG00000030582				55	0	0	51	13	20.3125
DBF4B	0	genome.wustl.edu	37	17	42824762	42824762	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	17	42824762	42824762	C	T	SNP	DBF4B	ENST00000315005	human	ensembl	74_37	+1	known	missense	c.943	p.L315F	1.000	pfam_Znf_DBF,smart_Znf_DBF	pfam_Znf_DBF,superfamily_BRCT_dom,smart_Znf_DBF	-	no_errors	DBF4B	HGNC	ENSG00000161692				79	0	0	71	16	18.3908
SPNS3	0	genome.wustl.edu	37	17	4337322	4337322	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	17	4337322	4337322	G	T	SNP	SPNS3	ENST00000355530	human	ensembl	74_37	+1	known	missense	c.60	p.Q20H	0.013	superfamily_MFS_dom_general_subst_transpt	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SPNS3	HGNC	ENSG00000182557				57	0	0	50	11	18.0328
STH	0	genome.wustl.edu	37	17	44076862	44076862	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	17	44076862	44076862	A	G	SNP	STH	ENST00000537309	human	ensembl	74_37	+1	known	missense	c.217	p.I73V	0.000	NULL	NULL	-	no_errors	STH	HGNC	ENSG00000256762				50	0	0	31	7	18.4211
ARRB2	0	genome.wustl.edu	37	17	4620985	4620985	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	17	4620985	4620985	C	T	SNP	ARRB2	ENST00000574502	human	ensembl	74_37	+1	known	missense	c.181	p.R61W	0.860	NULL	superfamily_Ig_E-set	-	no_errors	ARRB2	HGNC	ENSG00000141480				102	1	0.970874	94	16	14.5455
B4GALNT2	0	genome.wustl.edu	37	17	47233956	47233956	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	17	47233956	47233956	C	T	SNP	B4GALNT2	ENST00000300404	human	ensembl	74_37	+1	known	silent	c.669	p.P223	0.001	pirsf_GM2_synthase	pfam_Glyco_trans_2,pirsf_GM2_synthase	-	no_errors	B4GALNT2	HGNC	ENSG00000167080				139	0	0	105	28	21.0526
CACNA1G	0	genome.wustl.edu	37	17	48704077	48704077	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	17	48704077	48704077	G	A	SNP	CACNA1G	ENST00000359106	human	ensembl	74_37	+1	known	missense	c.7099	p.G2367S	1.000	NULL	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_VDCCAlpha1	-	no_errors	CACNA1G	HGNC	ENSG00000006283				171	0	0	132	8	5.71429
CAMTA2	0	genome.wustl.edu	37	17	4883536	4883536	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	17	4883536	4883536	C	T	SNP	CAMTA2	ENST00000414043	human	ensembl	74_37	-1	known	missense	c.1150	p.G384S	0.964	NULL	pfam_CG-1_dom,pfam_IPT,pfam_IQ_motif_EF-hand-BS,superfamily_Ig_E-set,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	CAMTA2	HGNC	ENSG00000108509				52	0	0	47	10	17.5439
CA10	0	genome.wustl.edu	37	17	49825029	49825029	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	17	49825029	49825029	C	T	SNP	CA10	ENST00000340813	human	ensembl	74_37	-1	known	silent	c.447	p.S149	0.146	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	-	no_errors	CA10	HGNC	ENSG00000154975				182	0	0	179	37	17.1296
NUP88	0	genome.wustl.edu	37	17	5292206	5292206	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	17	5292206	5292206	C	T	SNP	NUP88	ENST00000573584	human	ensembl	74_37	-1	known	missense	c.1559	p.R520H	0.939	pfam_Nucleoporin_Nup88	pfam_Nucleoporin_Nup88	-	no_errors	NUP88	HGNC	ENSG00000108559				67	0	0	38	7	15.5556
RPS6KB1	0	genome.wustl.edu	37	17	58013600	58013600	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	17	58013600	58013600	C	T	SNP	RPS6KB1	ENST00000225577	human	ensembl	74_37	+1	known	missense	c.1003	p.R335C	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ribosomal_S6_kinase,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase,pfscan_Prot_kinase_dom	-	no_errors	RPS6KB1	HGNC	ENSG00000108443				149	0	0	123	32	20.6452
FTSJ3	0	genome.wustl.edu	37	17	61902275	61902275	+	Silent	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	17	61902275	61902275	A	G	SNP	FTSJ3	ENST00000427159	human	ensembl	74_37	-1	known	silent	c.726	p.A242	0.986	pfam_rRNA_MeTfrase_Spb1_DUF3381	pfam_rRNA_MeTfrase_Spb1_C,pfam_rRNA_MeTrfase_FtsJ_dom,pfam_rRNA_MeTfrase_Spb1_DUF3381	-	no_errors	FTSJ3	HGNC	ENSG00000108592				71	0	0	52	13	20
SCN4A	0	genome.wustl.edu	37	17	62022940	62022940	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	17	62022940	62022940	C	T	SNP	SCN4A	ENST00000435607	human	ensembl	74_37	-1	known	missense	c.3500	p.C1167Y	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_PKD1_2_channel,pfscan_IQ_motif_EF-hand-BS,prints_Na_channel_a4su,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN4A	HGNC	ENSG00000007314				303	0	0	255	64	20.0627
SCN4A	0	genome.wustl.edu	37	17	62050177	62050177	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	17	62050177	62050177	G	T	SNP	SCN4A	ENST00000435607	human	ensembl	74_37	-1	known	missense	c.25	p.L9M	0.958	prints_Na_channel_a4su	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_PKD1_2_channel,pfscan_IQ_motif_EF-hand-BS,prints_Na_channel_a4su,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN4A	HGNC	ENSG00000007314				37	0	0	24	9	27.2727
SMURF2	0	genome.wustl.edu	37	17	62594568	62594568	+	Silent	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	17	62594568	62594568	A	G	SNP	SMURF2	ENST00000262435	human	ensembl	74_37	-1	known	silent	c.132	p.S44	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_HECT,pfam_WW_dom,pfam_C2_dom,superfamily_HECT,superfamily_C2_dom,superfamily_WW_dom,smart_C2_dom,smart_WW_dom,smart_HECT,pfscan_HECT,pfscan_C2_dom,pfscan_WW_dom	-	no_errors	SMURF2	HGNC	ENSG00000108854				124	0	0	106	18	14.5161
LRRC37A3	0	genome.wustl.edu	37	17	62855982	62855982	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	17	62855982	62855982	C	T	SNP	LRRC37A3	ENST00000319651	human	ensembl	74_37	-1	known	missense	c.4282	p.A1428T	0.007	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC37A3	HGNC	ENSG00000176809				98	0	0	50	19	27.5362
CEP112	0	genome.wustl.edu	37	17	63923699	63923699	+	Splice_Site	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	17	63923699	63923699	C	T	SNP	CEP112	ENST00000392769	human	ensembl	74_37	-1	known	splice_site	c.1980+1	e18+1	1.000	-	-	-	no_errors	CEP112	HGNC	ENSG00000154240				67	0	0	46	7	13.2075
KPNA2	0	genome.wustl.edu	37	17	66040600	66040600	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	17	66040600	66040600	C	T	SNP	KPNA2	ENST00000330459	human	ensembl	74_37	+1	known	missense	c.1328	p.A443V	1.000	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo	pfam_Armadillo,pfam_Importin-a_IBB,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo,pfscan_Importin-a_IBB	-	no_errors	KPNA2	HGNC	ENSG00000182481				419	0	0	374	55	12.8205
TMEM104	0	genome.wustl.edu	37	17	72832176	72832176	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	17	72832176	72832176	G	A	SNP	TMEM104	ENST00000335464	human	ensembl	74_37	+1	known	missense	c.841	p.V281I	1.000	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	TMEM104	HGNC	ENSG00000109066				137	0	0	86	26	23.2143
GRIN2C	0	genome.wustl.edu	37	17	72846360	72846360	+	Silent	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	17	72846360	72846360	G	A	SNP	GRIN2C	ENST00000293190	human	ensembl	74_37	-1	known	silent	c.1476	p.N492	1.000	pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,pfam_NMDAR2_C,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2C	HGNC	ENSG00000161509				119	0	0	61	55	47.4138
OTOP3	0	genome.wustl.edu	37	17	72942899	72942899	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	17	72942899	72942899	C	T	SNP	OTOP3	ENST00000328801	human	ensembl	74_37	+1	known	missense	c.949	p.R317C	1.000	pfam_Otopetrin	pfam_Otopetrin	-	no_errors	OTOP3	HGNC	ENSG00000182938				281	0	0	211	36	14.5749
NLGN2	0	genome.wustl.edu	37	17	7319413	7319413	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	17	7319413	7319413	T	G	SNP	NLGN2	ENST00000302926	human	ensembl	74_37	+1	known	missense	c.1621	p.F541V	1.000	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Neuroligin	-	no_errors	NLGN2	HGNC	ENSG00000169992				83	0	0	69	8	10.3896
CASKIN2	0	genome.wustl.edu	37	17	73500034	73500034	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	17	73500034	73500034	C	T	SNP	CASKIN2	ENST00000321617	human	ensembl	74_37	-1	known	missense	c.1477	p.A493T	1.000	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_SAM_2,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SAM,pfscan_SH3_domain,prints_Ankyrin_rpt	-	no_errors	CASKIN2	HGNC	ENSG00000177303				37	0	0	35	7	16.6667
TP53	0	genome.wustl.edu	37	17	7577121	7577121	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	17	7577121	7577121	G	A	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	missense	c.817	p.R273C	0.830	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510				37	0	0	32	4	11.1111
BIRC5	0	genome.wustl.edu	37	17	76219627	76219627	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	17	76219627	76219627	A	G	SNP	BIRC5	ENST00000301633	human	ensembl	74_37	+1	known	missense	c.490	p.M164V	0.000	NULL	pfam_BIR,smart_BIR,pfscan_BIR	-	no_errors	BIRC5	HGNC	ENSG00000089685				54	0	0	43	5	10.4167
PGS1	0	genome.wustl.edu	37	17	76400143	76400143	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	17	76400143	76400143	C	T	SNP	PGS1	ENST00000262764	human	ensembl	74_37	+1	known	missense	c.1375	p.R459W	1.000	pirsf_PLipase-D_PtdSer-synthase-type	pirsf_PLipase-D_PtdSer-synthase-type,pfscan_PLipase_D/transphosphatidylase	-	no_errors	PGS1	HGNC	ENSG00000087157				15	0	0	13	3	18.75
ENPP7	0	genome.wustl.edu	37	17	77709383	77709383	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	17	77709383	77709383	C	T	SNP	ENPP7	ENST00000328313	human	ensembl	74_37	+1	known	missense	c.941	p.A314V	0.000	pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	pfam_Phosphodiest/P_Trfase,pfam_Metalloenzyme,superfamily_Alkaline_phosphatase_core	-	no_errors	ENPP7	HGNC	ENSG00000182156				64	0	0	66	8	10.8108
RNF213	0	genome.wustl.edu	37	17	78320622	78320622	+	Silent	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	17	78320622	78320622	G	A	SNP	RNF213	ENST00000582970	human	ensembl	74_37	+1	known	silent	c.8487	p.Q2829	1.000	superfamily_P-loop_NTPase,smart_AAA+_ATPase	superfamily_P-loop_NTPase,smart_AAA+_ATPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF213	HGNC	ENSG00000173821				66	0	0	60	12	16.6667
BAIAP2	0	genome.wustl.edu	37	17	79060288	79060288	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	17	79060288	79060288	G	A	SNP	BAIAP2	ENST00000321300	human	ensembl	74_37	+1	known	missense	c.397	p.A133T	0.810	pfam_IRSp53/MIM_homology_IMD	pfam_IRSp53/MIM_homology_IMD,pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	BAIAP2	HGNC	ENSG00000175866				191	0	0	141	10	6.62252
BAIAP2	0	genome.wustl.edu	37	17	79078359	79078359	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	17	79078359	79078359	T	C	SNP	BAIAP2	ENST00000321300	human	ensembl	74_37	+1	known	missense	c.1112	p.L371P	1.000	superfamily_SH3_domain	pfam_IRSp53/MIM_homology_IMD,pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	BAIAP2	HGNC	ENSG00000175866				98	0	0	90	15	14.2857
PYCR1	0	genome.wustl.edu	37	17	79892203	79892203	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	17	79892203	79892203	G	A	SNP	PYCR1	ENST00000329875	human	ensembl	74_37	-1	known	missense	c.796	p.R266W	0.995	superfamily_6-PGluconate_DH_C-like,pirsf_Pyrroline-COOH_reductase,tigrfam_Pyrroline-COOH_reductase	pfam_G3P_DH_NAD-dep_N,superfamily_6-PGluconate_DH_C-like,pirsf_Pyrroline-COOH_reductase,tigrfam_Pyrroline-COOH_reductase	-	no_errors	PYCR1	HGNC	ENSG00000183010				51	0	0	52	7	11.8644
ARHGEF15	0	genome.wustl.edu	37	17	8219453	8219453	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	17	8219453	8219453	G	A	SNP	ARHGEF15	ENST00000361926	human	ensembl	74_37	+1	known	missense	c.1691	p.R564H	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	-	no_errors	ARHGEF15	HGNC	ENSG00000198844				29	0	0	23	3	11.5385
PIEZO2	0	genome.wustl.edu	37	18	10677801	10677801	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	18	10677801	10677801	C	T	SNP	PIEZO2	ENST00000538948	human	ensembl	74_37	-1	known	missense	c.1556	p.R519Q	0.132	pfam_Piezo	pfam_Piezo	-	no_errors	PIEZO2	HGNC	ENSG00000154864				75	0	0	47	12	20.339
TUBB6	0	genome.wustl.edu	37	18	12325183	12325183	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	18	12325183	12325183	G	A	SNP	TUBB6	ENST00000317702	human	ensembl	74_37	+1	known	missense	c.395	p.G132D	1.000	pfam_Tubulin_FtsZ_GTPase,superfamily_Tubulin_FtsZ_GTPase,smart_Tubulin_FtsZ_GTPase,prints_Tubulin,prints_Epsilon_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,pfam_Misato_II_tubulin-like,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin,prints_Gamma_tubulin,prints_Alpha_tubulin	-	no_errors	TUBB6	HGNC	ENSG00000176014				92	0	0	68	12	15
POTEC	0	genome.wustl.edu	37	18	14542908	14542908	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	18	14542908	14542908	C	T	SNP	POTEC	ENST00000358970	human	ensembl	74_37	-1	known	missense	c.238	p.V80M	0.003	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	POTEC	HGNC	ENSG00000183206				552	0	0	512	34	6.22711
ZNF521	0	genome.wustl.edu	37	18	22669475	22669475	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	18	22669475	22669475	T	A	SNP	ZNF521	ENST00000361524	human	ensembl	74_37	-1	known	missense	c.3860	p.D1287V	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF521	HGNC	ENSG00000198795				76	0	0	64	6	8.57143
SLC39A6	0	genome.wustl.edu	37	18	33704629	33704629	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	18	33704629	33704629	C	T	SNP	SLC39A6	ENST00000269187	human	ensembl	74_37	-1	known	missense	c.824	p.G275D	1.000	NULL	pfam_ZIP	-	no_errors	SLC39A6	HGNC	ENSG00000141424				75	0	0	63	12	16
MOCOS	0	genome.wustl.edu	37	18	33795561	33795561	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	18	33795561	33795561	C	T	SNP	MOCOS	ENST00000261326	human	ensembl	74_37	+1	known	missense	c.1418	p.S473L	1.000	pfam_Aminotrans_V/Cys_dSase,superfamily_PyrdxlP-dep_Trfase	pfam_MOSC_N,pfam_MoCF_Sase_C,pfam_Aminotrans_V/Cys_dSase,superfamily_PyrdxlP-dep_Trfase,superfamily_Pyrv_Knase-like_insert_dom	-	no_errors	MOCOS	HGNC	ENSG00000075643				63	0	0	54	11	16.9231
FHOD3	0	genome.wustl.edu	37	18	34156416	34156416	+	Silent	SNP	T	T	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	18	34156416	34156416	T	C	SNP	FHOD3	ENST00000257209	human	ensembl	74_37	+1	known	silent	c.514	p.L172	1.000	superfamily_ARM-type_fold	pfam_FH2_Formin,superfamily_ARM-type_fold,smart_FH2_Formin	-	no_errors	FHOD3	HGNC	ENSG00000134775				64	0	0	30	10	25
CELF4	0	genome.wustl.edu	37	18	34833784	34833784	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	18	34833784	34833784	C	T	SNP	CELF4	ENST00000420428	human	ensembl	74_37	-1	known	missense	c.1451	p.R484H	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CELF4	HGNC	ENSG00000101489				101	0	0	81	11	11.9565
EPG5	0	genome.wustl.edu	37	18	43481065	43481065	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	18	43481065	43481065	C	T	SNP	EPG5	ENST00000282041	human	ensembl	74_37	-1	known	silent	c.4542	p.P1514	0.000	NULL	NULL	-	no_errors	EPG5	HGNC	ENSG00000152223				117	0	0	88	17	16.1905
CXXC1	0	genome.wustl.edu	37	18	47809282	47809282	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	18	47809282	47809282	C	T	SNP	CXXC1	ENST00000412036	human	ensembl	74_37	-1	known	missense	c.1778	p.R593H	1.000	pfam_CpG-bd_C	pfam_CpG-bd_C,pfam_Znf_CXXC,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	CXXC1	HGNC	ENSG00000154832				74	0	0	41	3	6.81818
MRO	0	genome.wustl.edu	37	18	48333094	48333094	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	18	48333094	48333094	C	T	SNP	MRO	ENST00000436348	human	ensembl	74_37	-1	known	missense	c.268	p.A90T	0.997	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	MRO	HGNC	ENSG00000134042				173	0	0	154	31	16.7568
DCC	0	genome.wustl.edu	37	18	51013231	51013231	+	Silent	SNP	T	T	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	18	51013231	51013231	T	A	SNP	DCC	ENST00000442544	human	ensembl	74_37	+1	known	silent	c.3801	p.S1267	0.969	pfam_Neogenin_C	pfam_Neogenin_C,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	DCC	HGNC	ENSG00000187323				146	0	0	115	32	21.7687
CDH20	0	genome.wustl.edu	37	18	59206270	59206270	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	18	59206270	59206270	G	T	SNP	CDH20	ENST00000262717	human	ensembl	74_37	+1	known	missense	c.1422	p.Q474H	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH20	HGNC	ENSG00000101542				151	0	0	105	11	9.48276
RTTN	0	genome.wustl.edu	37	18	67817279	67817279	+	Silent	SNP	T	T	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	18	67817279	67817279	T	C	SNP	RTTN	ENST00000255674	human	ensembl	74_37	-1	known	silent	c.2100	p.G700	0.808	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	RTTN	HGNC	ENSG00000176225				67	0	0	73	6	7.59494
LAMA1	0	genome.wustl.edu	37	18	6942108	6942108	+	Silent	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	18	6942108	6942108	G	A	SNP	LAMA1	ENST00000389658	human	ensembl	74_37	-1	known	silent	c.9198	p.F3066	0.976	superfamily_ConA-like_lec_gl_sf,pfscan_Laminin_G	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_B_type_IV,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_II,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA1	HGNC	ENSG00000101680				125	0	0	118	21	15.1079
LAMA1	0	genome.wustl.edu	37	18	6949117	6949117	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	18	6949117	6949117	C	T	SNP	LAMA1	ENST00000389658	human	ensembl	74_37	-1	known	missense	c.8539	p.A2847T	0.897	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_B_type_IV,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_II,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA1	HGNC	ENSG00000101680				49	0	0	55	4	6.77966
LAMA1	0	genome.wustl.edu	37	18	6985243	6985243	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	18	6985243	6985243	G	T	SNP	LAMA1	ENST00000389658	human	ensembl	74_37	-1	known	missense	c.5653	p.L1885M	0.162	NULL	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_B_type_IV,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_II,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA1	HGNC	ENSG00000101680				211	1	0.471698	147	37	20.1087
LAMA1	0	genome.wustl.edu	37	18	7014008	7014008	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	18	7014008	7014008	C	T	SNP	LAMA1	ENST00000389658	human	ensembl	74_37	-1	known	missense	c.3169	p.D1057N	0.111	pfam_EGF_laminin,smart_EGF_laminin,smart_EG-like_dom,pfscan_EGF_laminin	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_B_type_IV,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_II,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA1	HGNC	ENSG00000101680				39	0	0	15	8	34.7826
LAMA1	0	genome.wustl.edu	37	18	7049221	7049221	+	Silent	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	18	7049221	7049221	A	G	SNP	LAMA1	ENST00000389658	human	ensembl	74_37	-1	known	silent	c.624	p.A208	0.929	pfam_Laminin_N,smart_Laminin_N,pfscan_Laminin_N	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_B_type_IV,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_II,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA1	HGNC	ENSG00000101680				98	0	0	77	15	16.3043
ENSG00000264340	0	genome.wustl.edu	37	18	72229273	72229273	+	RNA	SNP	T	T	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	18	72229273	72229273	T	C	SNP	ENSG00000264340	ENST00000583702	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.015	-	-	-	no_errors	RP11-231E4.3	Clone_based_vega_gene	ENSG00000264340				96	0	0	63	21	25
NFATC1	0	genome.wustl.edu	37	18	77170867	77170867	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	18	77170867	77170867	G	A	SNP	NFATC1	ENST00000427363	human	ensembl	74_37	+1	known	missense	c.592	p.A198T	0.980	NULL	pfam_RHD,pfam_IPT,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT,pfscan_RHD,prints_NFAT	-	no_errors	NFATC1	HGNC	ENSG00000131196				145	0	0	118	9	7.08661
SOGA2	0	genome.wustl.edu	37	18	8718506	8718506	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	18	8718506	8718506	C	T	SNP	SOGA2	ENST00000359865	human	ensembl	74_37	+1	known	missense	c.58	p.R20W	0.996	NULL	pfam_SOGA	-	no_errors	SOGA2	HGNC	ENSG00000168502				96	0	0	90	15	14.2857
ANKRD12	0	genome.wustl.edu	37	18	9258243	9258243	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	18	9258243	9258243	C	T	SNP	ANKRD12	ENST00000262126	human	ensembl	74_37	+1	known	missense	c.4978	p.P1660S	0.965	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD12	HGNC	ENSG00000101745				32	0	0	28	8	22.2222
EIF3G	0	genome.wustl.edu	37	19	10226702	10226702	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	19	10226702	10226702	G	A	SNP	EIF3G	ENST00000253108	human	ensembl	74_37	-1	known	missense	c.644	p.P215L	0.998	pirsf_eIF3_g	pfam_eIF3g_N,pfam_RRM_dom,smart_RRM_dom,pirsf_eIF3_g,pfscan_RRM_dom	-	no_errors	EIF3G	HGNC	ENSG00000130811				42	0	0	35	5	12.5
QTRT1	0	genome.wustl.edu	37	19	10823277	10823277	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	19	10823277	10823277	C	T	SNP	QTRT1	ENST00000250237	human	ensembl	74_37	+1	known	silent	c.834	p.F278	1.000	pfam_tRNA_ribo_trans-like,superfamily_tRNA_ribo_trans-like,tigrfam_Queuine_tRNA-ribosylTrfase,tigrfam_tRNA_ribo_trans-like	pfam_tRNA_ribo_trans-like,superfamily_tRNA_ribo_trans-like,tigrfam_Queuine_tRNA-ribosylTrfase,tigrfam_tRNA_ribo_trans-like	-	no_errors	QTRT1	HGNC	ENSG00000213339				207	0	0	194	11	5.36585
SBNO2	0	genome.wustl.edu	37	19	1109760	1109760	+	Silent	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	19	1109760	1109760	G	A	SNP	SBNO2	ENST00000361757	human	ensembl	74_37	-1	known	silent	c.3045	p.I1015	0.000	NULL	superfamily_P-loop_NTPase	-	no_errors	SBNO2	HGNC	ENSG00000064932				54	0	0	55	9	14.0625
ZNF563	0	genome.wustl.edu	37	19	12429861	12429861	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	19	12429861	12429861	T	C	SNP	ZNF563	ENST00000293725	human	ensembl	74_37	-1	known	missense	c.978	p.I326M	0.209	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF563	HGNC	ENSG00000188868				183	0	0	152	28	15.5556
TNPO2	0	genome.wustl.edu	37	19	12826219	12826219	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	19	12826219	12826219	C	T	SNP	TNPO2	ENST00000425528	human	ensembl	74_37	-1	known	missense	c.566	p.R189Q	1.000	superfamily_ARM-type_fold	pfam_HEAT,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N	-	no_errors	TNPO2	HGNC	ENSG00000105576				91	0	0	75	15	16.6667
MAST1	0	genome.wustl.edu	37	19	12985178	12985178	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	19	12985178	12985178	A	T	SNP	MAST1	ENST00000251472	human	ensembl	74_37	+1	known	missense	c.4207	p.M1403L	0.002	NULL	pfam_MA_Ser/Thr_Kinase_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,superfamily_Kinase-like_dom,superfamily_MAST_pre-PK_dom,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PDZ,pfscan_PDZ,pfscan_Prot_kinase_dom	-	no_errors	MAST1	HGNC	ENSG00000105613				44	0	0	34	3	8.10811
MUM1	0	genome.wustl.edu	37	19	1362336	1362336	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	19	1362336	1362336	T	C	SNP	MUM1	ENST00000344663	human	ensembl	74_37	+1	known	missense	c.1202	p.V401A	0.849	NULL	pfam_PWWP_dom	-	no_errors	MUM1	HGNC	ENSG00000160953				51	0	0	32	6	15.7895
DAZAP1	0	genome.wustl.edu	37	19	1432615	1432615	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	19	1432615	1432615	C	T	SNP	DAZAP1	ENST00000233078	human	ensembl	74_37	+1	known	missense	c.974	p.P325L	0.985	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	DAZAP1	HGNC	ENSG00000071626				151	1	0.657895	123	34	21.6561
NWD1	0	genome.wustl.edu	37	19	16860328	16860328	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	19	16860328	16860328	C	T	SNP	NWD1	ENST00000379808	human	ensembl	74_37	+1	known	missense	c.875	p.A292V	0.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_P-loop_NTPase,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NWD1	HGNC	ENSG00000188039				63	0	0	45	7	13.4615
GTPBP3	0	genome.wustl.edu	37	19	17449796	17449796	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	19	17449796	17449796	G	A	SNP	GTPBP3	ENST00000358792	human	ensembl	74_37	+1	known	missense	c.625	p.G209S	0.999	superfamily_P-loop_NTPase	pfam_GTP-bd_TrmE_N,pfam_GTP_binding_domain,superfamily_P-loop_NTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	GTPBP3	HGNC	ENSG00000130299				85	0	0	71	18	20.2247
SLC27A1	0	genome.wustl.edu	37	19	17611367	17611367	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	19	17611367	17611367	A	G	SNP	SLC27A1	ENST00000252595	human	ensembl	74_37	+1	known	missense	c.1397	p.Y466C	0.999	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	SLC27A1	HGNC	ENSG00000130304				22	0	0	20	4	16.6667
COLGALT1	0	genome.wustl.edu	37	19	17692195	17692195	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	19	17692195	17692195	C	G	SNP	COLGALT1	ENST00000252599	human	ensembl	74_37	+1	known	missense	c.1811	p.A604G	1.000	NULL	pfam_Glyco_trans_25	-	no_errors	COLGALT1	HGNC	ENSG00000130309				64	0	0	52	10	16.129
FCHO1	0	genome.wustl.edu	37	19	17886908	17886908	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	19	17886908	17886908	G	A	SNP	FCHO1	ENST00000252771	human	ensembl	74_37	+1	known	missense	c.1120	p.E374K	0.973	NULL	pfam_Muniscin_C-term_mu_dom,pfam_FCH_dom,superfamily_Clathrin_mu_C,smart_FCH_dom,pfscan_FCH_dom	-	no_errors	FCHO1	HGNC	ENSG00000130475				118	0	0	78	28	26.4151
B3GNT3	0	genome.wustl.edu	37	19	17919127	17919127	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	19	17919127	17919127	G	A	SNP	B3GNT3	ENST00000318683	human	ensembl	74_37	+1	known	missense	c.511	p.G171R	0.023	pfam_Glyco_trans_31	pfam_Glyco_trans_31	-	no_errors	B3GNT3	HGNC	ENSG00000179913				78	0	0	69	4	5.47945
ATP13A1	0	genome.wustl.edu	37	19	19758041	19758041	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	19	19758041	19758041	C	T	SNP	ATP13A1	ENST00000357324	human	ensembl	74_37	-1	known	missense	c.3002	p.S1001N	1.000	tigrfam_ATPase_P-typ_Cation_typ_V	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Cation_typ_V,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP13A1	HGNC	ENSG00000105726				139	0	0	111	25	18.3824
ZNF43	0	genome.wustl.edu	37	19	21991137	21991137	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	19	21991137	21991137	A	C	SNP	ZNF43	ENST00000354959	human	ensembl	74_37	-1	known	missense	c.1702	p.C568G	0.799	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF43	HGNC	ENSG00000198521				85	0	0	71	17	19.3182
ZNF43	0	genome.wustl.edu	37	19	21992108	21992108	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	19	21992108	21992108	C	T	SNP	ZNF43	ENST00000354959	human	ensembl	74_37	-1	known	missense	c.731	p.R244H	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF43	HGNC	ENSG00000198521				63	0	0	54	10	15.625
DOT1L	0	genome.wustl.edu	37	19	2222099	2222099	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	19	2222099	2222099	C	T	SNP	DOT1L	ENST00000398665	human	ensembl	74_37	+1	known	silent	c.2931	p.T977	0.001	pirsf_Histone_H3-K79_MeTrfase_met	pfam_DOT1,pirsf_Histone_H3-K79_MeTrfase_met	-	no_errors	DOT1L	HGNC	ENSG00000104885				69	0	0	34	9	20.9302
C19orf12	0	genome.wustl.edu	37	19	30193763	30193763	+	Silent	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	19	30193763	30193763	G	A	SNP	C19orf12	ENST00000392278	human	ensembl	74_37	-1	known	silent	c.315	p.A105	0.687	NULL	NULL	-	no_errors	C19orf12	HGNC	ENSG00000131943				87	0	0	64	15	18.9873
ZNF536	0	genome.wustl.edu	37	19	30934972	30934972	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	19	30934972	30934972	C	T	SNP	ZNF536	ENST00000355537	human	ensembl	74_37	+1	known	missense	c.503	p.A168V	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF536	HGNC	ENSG00000198597				63	0	0	31	5	13.8889
HPN	0	genome.wustl.edu	37	19	35556774	35556774	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	19	35556774	35556774	C	T	SNP	HPN	ENST00000262626	human	ensembl	74_37	+1	known	silent	c.1053	p.G351	0.004	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	pfam_Peptidase_S1,pfam_Hepsin-SRCR,superfamily_Trypsin-like_Pept_dom,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	HPN	HGNC	ENSG00000105707				121	0	0	103	27	20.7692
LSR	0	genome.wustl.edu	37	19	35752847	35752847	+	Silent	SNP	T	T	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	19	35752847	35752847	T	C	SNP	LSR	ENST00000361790	human	ensembl	74_37	+1	known	silent	c.738	p.A246	1.000	NULL	pfam_LISCH7,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	LSR	HGNC	ENSG00000105699				123	0	0	100	26	20.6349
MAG	0	genome.wustl.edu	37	19	35800926	35800926	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	19	35800926	35800926	G	A	SNP	MAG	ENST00000392213	human	ensembl	74_37	+1	known	missense	c.1381	p.V461M	1.000	NULL	pfam_Ig_I-set,pfam_CD80_C2-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	MAG	HGNC	ENSG00000105695				95	0	0	71	20	21.978
FFAR3	0	genome.wustl.edu	37	19	35850476	35850476	+	Silent	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	19	35850476	35850476	G	A	SNP	FFAR3	ENST00000327809	human	ensembl	74_37	+1	known	silent	c.684	p.A228	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_GPR40-rel_orph	-	no_errors	FFAR3	HGNC	ENSG00000185897				154	0	0	117	10	7.87402
LOC100506469	0	genome.wustl.edu	37	19	36034524	36034524	+	RNA	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	19	36034524	36034524	G	A	SNP	LOC100506469	ENST00000588286	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	AD000090.2	Clone_based_vega_gene	ENSG00000236144				102	0	0	89	14	13.5922
KMT2B	0	genome.wustl.edu	37	19	36211852	36211852	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	19	36211852	36211852	C	T	SNP	KMT2B	ENST00000222270	human	ensembl	74_37	+1	known	missense	c.1603	p.R535C	1.000	pirsf_MeTrfase_trithorax	pirsf_MeTrfase_trithorax,pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	KMT2B	Uniprot_gn	ENSG00000272333				18	0	0	19	6	24
PIP5K1C	0	genome.wustl.edu	37	19	3653503	3653503	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	19	3653503	3653503	C	T	SNP	PIP5K1C	ENST00000537021	human	ensembl	74_37	-1	known	missense	c.706	p.V236M	1.000	pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub	pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub	-	no_errors	PIP5K1C	HGNC	ENSG00000186111				108	0	0	96	17	15.0442
WDR62	0	genome.wustl.edu	37	19	36594727	36594727	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	19	36594727	36594727	G	T	SNP	WDR62	ENST00000401500	human	ensembl	74_37	+1	known	nonsense	c.3997	p.E1333*	0.005	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR62	HGNC	ENSG00000075702				99	0	0	89	9	9.18367
ZNF565	0	genome.wustl.edu	37	19	36686014	36686014	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	19	36686014	36686014	T	A	SNP	ZNF565	ENST00000304116	human	ensembl	74_37	-1	known	missense	c.54	p.E18D	1.000	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF565	HGNC	ENSG00000196357				126	0	0	106	21	16.5354
MATK	0	genome.wustl.edu	37	19	3779120	3779120	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	19	3779120	3779120	C	T	SNP	MATK	ENST00000395045	human	ensembl	74_37	-1	known	missense	c.1070	p.R357H	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	MATK	HGNC	ENSG00000007264				34	0	0	31	7	18.4211
HKR1	0	genome.wustl.edu	37	19	37854405	37854405	+	Silent	SNP	A	A	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	19	37854405	37854405	A	C	SNP	HKR1	ENST00000324411	human	ensembl	74_37	+1	known	silent	c.1708	p.R570	0.003	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	HKR1	HGNC	ENSG00000181666				76	0	0	57	8	12.3077
PPP1R14A	0	genome.wustl.edu	37	19	38742064	38742064	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	19	38742064	38742064	G	A	SNP	PPP1R14A	ENST00000301242	human	ensembl	74_37	-1	known	missense	c.338	p.A113V	0.055	pfam_PP1_inhibitor,superfamily_PP1_inhibitor	pfam_PP1_inhibitor,superfamily_PP1_inhibitor	-	no_errors	PPP1R14A	HGNC	ENSG00000167641				47	0	0	25	7	21.875
FAM98C	0	genome.wustl.edu	37	19	38899499	38899499	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	19	38899499	38899499	C	T	SNP	FAM98C	ENST00000252530	human	ensembl	74_37	+1	known	missense	c.1027	p.R343C	0.230	NULL	pfam_Uncharacterised_FAM98	-	no_errors	FAM98C	HGNC	ENSG00000130244				100	0	0	74	19	20.4301
NMRK2	0	genome.wustl.edu	37	19	3941175	3941175	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	19	3941175	3941175	G	T	SNP	NMRK2	ENST00000168977	human	ensembl	74_37	+1	known	missense	c.502	p.V168F	0.995	superfamily_P-loop_NTPase	superfamily_P-loop_NTPase	-	no_errors	NMRK2	HGNC	ENSG00000077009				110	1	0.900901	88	23	20.7207
IFNL3	0	genome.wustl.edu	37	19	39735458	39735458	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	19	39735458	39735458	C	T	SNP	IFNL3	ENST00000413851	human	ensembl	74_37	-1	known	silent	c.150	p.L50	0.975	NULL	NULL	-	no_errors	IFNL3	HGNC	ENSG00000197110				52	0	0	44	8	15.3846
MAP3K10	0	genome.wustl.edu	37	19	40704384	40704384	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	19	40704384	40704384	G	A	SNP	MAP3K10	ENST00000253055	human	ensembl	74_37	+1	known	missense	c.785	p.S262N	1.000	pirsf_MAPKKK9/10/11,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_MAPKKK9/10/11,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH3_2,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH3_domain,pfscan_SH3_domain,pfscan_Prot_kinase_dom	-	no_errors	MAP3K10	HGNC	ENSG00000130758				69	0	0	45	8	15.0943
HIPK4	0	genome.wustl.edu	37	19	40886552	40886552	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	19	40886552	40886552	G	A	SNP	HIPK4	ENST00000291823	human	ensembl	74_37	-1	known	missense	c.1346	p.A449V	0.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	HIPK4	HGNC	ENSG00000160396				158	0	0	121	34	21.9355
C19orf54	0	genome.wustl.edu	37	19	41248565	41248565	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	19	41248565	41248565	G	A	SNP	C19orf54	ENST00000378313	human	ensembl	74_37	-1	known	missense	c.829	p.P277S	1.000	NULL	NULL	-	no_errors	C19orf54	HGNC	ENSG00000188493				28	0	0	28	3	9.67742
EGLN2	0	genome.wustl.edu	37	19	41306679	41306679	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	19	41306679	41306679	G	A	SNP	EGLN2	ENST00000303961	human	ensembl	74_37	+1	known	missense	c.202	p.A68T	0.181	NULL	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	EGLN2	HGNC	ENSG00000269858				39	0	0	29	3	9.375
B9D2	0	genome.wustl.edu	37	19	41860739	41860739	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	19	41860739	41860739	G	A	SNP	B9D2	ENST00000243578	human	ensembl	74_37	-1	known	missense	c.394	p.P132S	0.999	pfam_B9_dom	pfam_B9_dom	-	no_errors	B9D2	HGNC	ENSG00000123810				77	0	0	50	13	20.6349
ZNF526	0	genome.wustl.edu	37	19	42729561	42729561	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	19	42729561	42729561	A	G	SNP	ZNF526	ENST00000301215	human	ensembl	74_37	+1	known	missense	c.1006	p.T336A	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF526	HGNC	ENSG00000167625				63	0	0	53	9	14.5161
ZNF526	0	genome.wustl.edu	37	19	42730480	42730480	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	19	42730480	42730480	C	T	SNP	ZNF526	ENST00000301215	human	ensembl	74_37	+1	known	missense	c.1925	p.A642V	0.954	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF526	HGNC	ENSG00000167625				170	0	0	139	31	18.2353
MEGF8	0	genome.wustl.edu	37	19	42848624	42848624	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	19	42848624	42848624	G	A	SNP	MEGF8	ENST00000251268	human	ensembl	74_37	+1	known	missense	c.1820	p.R607H	1.000	smart_Plexin-like_fold	pfam_CUB_dom,pfam_EGF_laminin,pfam_Plexin_repeat,superfamily_Gal_Oxase/kelch_b-propeller,superfamily_CUB_dom,superfamily_Plexin-like_fold,smart_CUB_dom,smart_EG-like_dom,smart_Plexin-like_fold,smart_EGF-like_Ca-bd_dom,smart_EGF_laminin,pfscan_CUB_dom,pfscan_EG-like_dom,pfscan_EGF_laminin	-	no_errors	MEGF8	HGNC	ENSG00000105429				75	0	0	49	14	22.2222
ZNF235	0	genome.wustl.edu	37	19	44792076	44792076	+	Silent	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	19	44792076	44792076	G	A	SNP	ZNF235	ENST00000291182	human	ensembl	74_37	-1	known	silent	c.1512	p.S504	0.043	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF235	HGNC	ENSG00000159917				133	0	0	112	20	15.1515
PVRL2	0	genome.wustl.edu	37	19	45385524	45385524	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	19	45385524	45385524	G	A	SNP	PVRL2	ENST00000252483	human	ensembl	74_37	+1	known	missense	c.1099	p.A367T	0.952	NULL	pfam_CD80_C2-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	PVRL2	HGNC	ENSG00000130202				27	0	0	19	5	20.8333
MARK4	0	genome.wustl.edu	37	19	45783878	45783878	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	19	45783878	45783878	C	T	SNP	MARK4	ENST00000262891	human	ensembl	74_37	+1	known	missense	c.1162	p.R388W	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_KA1_dom,pfam_UBA/Ts_N,superfamily_Kinase-like_dom,superfamily_KA1/Ssp2_C,superfamily_UBA-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_UBA/transl_elong_EF1B_N_euk,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom	-	no_errors	MARK4	HGNC	ENSG00000007047				84	0	0	68	12	15
FAM83E	0	genome.wustl.edu	37	19	49107020	49107020	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	19	49107020	49107020	C	T	SNP	FAM83E	ENST00000263266	human	ensembl	74_37	-1	known	missense	c.907	p.G303S	0.450	NULL	pfam_DUF1669,superfamily_Acyl_CoA_acyltransferase	-	no_errors	FAM83E	HGNC	ENSG00000105523				27	0	0	20	4	16.6667
FLT3LG	0	genome.wustl.edu	37	19	49983619	49983619	+	Silent	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	19	49983619	49983619	G	A	SNP	FLT3LG	ENST00000594009	human	ensembl	74_37	+1	known	silent	c.546	p.P182	0.000	NULL	pfam_Flt3_lig,superfamily_4_helix_cytokine-like_core	-	no_errors	FLT3LG	HGNC	ENSG00000090554				34	0	0	34	3	8.10811
RPL13A	0	genome.wustl.edu	37	19	49993758	49993758	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	19	49993758	49993758	C	T	SNP	RPL13A	ENST00000391857	human	ensembl	74_37	+1	known	missense	c.181	p.R61W	1.000	pfam_Ribosomal_L13,superfamily_Ribosomal_L13_dom,tigrfam_Ribosomal_L13_euk/arc	pfam_Ribosomal_L13,superfamily_Ribosomal_L13_dom,tigrfam_Ribosomal_L13_euk/arc	-	no_errors	RPL13A	HGNC	ENSG00000142541				71	0	0	64	5	7.24638
SCAF1	0	genome.wustl.edu	37	19	50154616	50154616	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	19	50154616	50154616	G	A	SNP	SCAF1	ENST00000360565	human	ensembl	74_37	+1	known	missense	c.970	p.A324T	0.008	NULL	NULL	-	no_errors	SCAF1	HGNC	ENSG00000126461				44	0	0	39	10	20.4082
LRRC4B	0	genome.wustl.edu	37	19	51022666	51022666	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	19	51022666	51022666	G	A	SNP	LRRC4B	ENST00000389201	human	ensembl	74_37	-1	known	missense	c.304	p.R102W	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LRRC4B	HGNC	ENSG00000131409				31	0	0	18	3	14.2857
KLK8	0	genome.wustl.edu	37	19	51503767	51503767	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	19	51503767	51503767	G	A	SNP	KLK8	ENST00000391806	human	ensembl	74_37	-1	known	missense	c.278	p.A93V	0.009	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	KLK8	HGNC	ENSG00000129455				107	0	0	101	11	9.82143
ZNF347	0	genome.wustl.edu	37	19	53644036	53644036	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	19	53644036	53644036	T	C	SNP	ZNF347	ENST00000452676	human	ensembl	74_37	-1	known	missense	c.2048	p.Q683R	0.001	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF347	HGNC	ENSG00000197937				162	0	0	108	29	21.1679
ZNF677	0	genome.wustl.edu	37	19	53741121	53741121	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	19	53741121	53741121	C	T	SNP	ZNF677	ENST00000333952	human	ensembl	74_37	-1	known	missense	c.859	p.G287R	0.996	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF677	HGNC	ENSG00000197928				121	0	0	112	27	19.4245
MIR518B	0	genome.wustl.edu	37	19	54206014	54206014	+	RNA	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	19	54206014	54206014	A	G	SNP	MIR518B	ENST00000385127	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.035	-	-	-	no_errors	MIR518B	HGNC	ENSG00000207862				85	0	0	57	6	9.52381
MIR518B	0	genome.wustl.edu	37	19	54206046	54206046	+	RNA	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	19	54206046	54206046	C	T	SNP	MIR518B	ENST00000385127	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.018	-	-	-	no_errors	MIR518B	HGNC	ENSG00000207862				67	0	0	34	21	38.1818
NLRP12	0	genome.wustl.edu	37	19	54297338	54297338	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	19	54297338	54297338	G	A	SNP	NLRP12	ENST00000324134	human	ensembl	74_37	-1	known	nonsense	c.3151	p.R1051*	0.212	NULL	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP12	HGNC	ENSG00000142405				92	0	0	75	13	14.7727
MYADM	0	genome.wustl.edu	37	19	54376803	54376803	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	19	54376803	54376803	G	A	SNP	MYADM	ENST00000336967	human	ensembl	74_37	+1	known	missense	c.20	p.R7H	0.700	NULL	pfam_Marvel	-	no_errors	MYADM	HGNC	ENSG00000179820				83	0	0	78	20	20.4082
PRKCG	0	genome.wustl.edu	37	19	54401306	54401306	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	19	54401306	54401306	C	T	SNP	PRKCG	ENST00000540413	human	ensembl	74_37	+1	known	missense	c.1033	p.R345C	1.000	pirsf_Protein_kinase_C_a/b/g	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_C2_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Protein_kinase_C_a/b/g,prints_DAG/PE-bd,prints_C2_dom,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom	-	no_errors	PRKCG	HGNC	ENSG00000126583				97	0	0	63	15	19.2308
LENG1	0	genome.wustl.edu	37	19	54662025	54662025	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	19	54662025	54662025	C	T	SNP	LENG1	ENST00000222224	human	ensembl	74_37	-1	known	missense	c.307	p.E103K	1.000	NULL	NULL	-	no_errors	LENG1	HGNC	ENSG00000105617				181	0	0	132	21	13.7255
LILRB3	0	genome.wustl.edu	37	19	54720971	54720971	+	Silent	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	19	54720971	54720971	G	A	SNP	LILRB3	ENST00000407860	human	ensembl	74_37	-1	known	silent	c.1938	p.A646	0.001	NULL	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LILRB3	HGNC	ENSG00000204577				99	0	0	88	21	19.2661
LILRB2	0	genome.wustl.edu	37	19	54780248	54780248	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	19	54780248	54780248	C	T	SNP	LILRB2	ENST00000391749	human	ensembl	74_37	-1	known	missense	c.1546	p.G516S	0.011	NULL	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LILRB2	HGNC	ENSG00000131042				62	0	0	48	12	20
ENSG00000269808	0	genome.wustl.edu	37	19	55738705	55738705	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	19	55738705	55738705	G	A	SNP	ENSG00000269808	ENST00000598855	human	ensembl	74_37	+1	known	missense	c.67	p.A23T	0.029	NULL	NULL	-	no_errors	AC010327.2	Clone_based_ensembl_gene	ENSG00000269808				28	0	0	20	2	9.09091
ZNF772	0	genome.wustl.edu	37	19	57987952	57987952	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	19	57987952	57987952	C	T	SNP	ZNF772	ENST00000450712	human	ensembl	74_37	-1	known	missense	c.122	p.R41H	0.000	NULL	NULL	-	no_errors	ZNF772	HGNC	ENSG00000197128				62	0	0	37	11	22.9167
ZNF416	0	genome.wustl.edu	37	19	58084147	58084147	+	Silent	SNP	A	A	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	19	58084147	58084147	A	C	SNP	ZNF416	ENST00000196489	human	ensembl	74_37	-1	known	silent	c.1125	p.T375	0.447	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF416	HGNC	ENSG00000083817				112	0	0	75	15	16.6667
ZNF814	0	genome.wustl.edu	37	19	58386508	58386508	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	19	58386508	58386508	C	T	SNP	ZNF814	ENST00000435989	human	ensembl	74_37	-1	known	missense	c.250	p.A84T	0.000	pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF814	HGNC	ENSG00000204514				35	0	0	17	6	26.087
ZNF417	0	genome.wustl.edu	37	19	58420174	58420174	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	19	58420174	58420174	G	A	SNP	ZNF417	ENST00000312026	human	ensembl	74_37	-1	known	missense	c.1472	p.P491L	0.972	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF417	HGNC	ENSG00000173480				148	0	0	97	14	12.6126
ZNF497	0	genome.wustl.edu	37	19	58868484	58868484	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	19	58868484	58868484	G	A	SNP	ZNF497	ENST00000311044	human	ensembl	74_37	-1	known	missense	c.518	p.A173V	0.117	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF497	HGNC	ENSG00000174586				28	0	0	30	5	14.2857
ZBTB45	0	genome.wustl.edu	37	19	59028581	59028581	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	19	59028581	59028581	G	A	SNP	ZBTB45	ENST00000354590	human	ensembl	74_37	-1	known	missense	c.460	p.R154C	0.996	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB45	HGNC	ENSG00000119574				50	0	0	35	7	16.6667
C3	0	genome.wustl.edu	37	19	6694500	6694500	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	19	6694500	6694500	C	A	SNP	C3	ENST00000245907	human	ensembl	74_37	-1	known	missense	c.3096	p.E1032D	0.945	superfamily_Terpenoid_cyclase/PrenylTrfase	pfam_A2M_comp,pfam_A-macroglobulin_rcpt-bd,pfam_Macroglobln_a2,pfam_Netrin_module_non-TIMP,pfam_A2M_N_2,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_Anaphylatoxin/fibulin,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_TIMP-like_OB-fold,superfamily_A-macroglobulin_rcpt-bd,superfamily_Anaphylatoxin_comp_syst,smart_Anaphylatoxin/fibulin,smart_Netrin_module_non-TIMP,prints_Anaphylatoxn_comp_syst_dom,pfscan_Anaphylatoxin/fibulin,pfscan_Netrin_domain	-	no_errors	C3	HGNC	ENSG00000125730				142	0	0	115	18	13.5338
SH2D3A	0	genome.wustl.edu	37	19	6754122	6754122	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	19	6754122	6754122	G	A	SNP	SH2D3A	ENST00000245908	human	ensembl	74_37	-1	known	missense	c.1325	p.A442V	0.547	pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25	pfam_SH2,pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_SH2,smart_RasGRF_CDC25,pfscan_SH2,prints_SH2	-	no_errors	SH2D3A	HGNC	ENSG00000125731				43	0	0	37	9	19.5652
ZNF358	0	genome.wustl.edu	37	19	7585732	7585732	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	19	7585732	7585732	A	G	SNP	ZNF358	ENST00000394341	human	ensembl	74_37	+1	known	missense	c.1604	p.D535G	0.005	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF358	HGNC	ENSG00000198816				126	0	0	109	18	14.1732
CAMSAP3	0	genome.wustl.edu	37	19	7676000	7676000	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	19	7676000	7676000	C	T	SNP	CAMSAP3	ENST00000446248	human	ensembl	74_37	+1	known	missense	c.1150	p.R384C	1.000	NULL	pfam_CKK_domain,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_PRC_barrel-like,superfamily_CH-domain	-	no_errors	CAMSAP3	HGNC	ENSG00000076826				143	0	0	110	34	23.6111
PTBP1	0	genome.wustl.edu	37	19	805056	805056	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	19	805056	805056	G	A	SNP	PTBP1	ENST00000356948	human	ensembl	74_37	+1	known	missense	c.761	p.R254H	1.000	smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP-L_PTB	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP-L_PTB	-	no_errors	PTBP1	HGNC	ENSG00000011304				203	0	0	155	34	17.9894
PTBP1	0	genome.wustl.edu	37	19	808629	808629	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	19	808629	808629	C	T	SNP	PTBP1	ENST00000356948	human	ensembl	74_37	+1	known	missense	c.1330	p.R444C	1.000	tigrfam_HnRNP-L_PTB	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP-L_PTB	-	no_errors	PTBP1	HGNC	ENSG00000011304				35	0	0	20	4	16.6667
MUC16	0	genome.wustl.edu	37	19	9063005	9063005	+	Silent	SNP	A	A	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	19	9063005	9063005	A	C	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	silent	c.24441	p.T8147	0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				146	0	0	113	22	16.2963
SLC9A4	0	genome.wustl.edu	37	2	103130652	103130652	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	103130652	103130652	G	T	SNP	SLC9A4	ENST00000295269	human	ensembl	74_37	+1	known	missense	c.1663	p.A555S	1.000	tigrfam_NaH_exchanger	pfam_Cation/H_exchanger,prints_NaH_exchanger,prints_Na/H_exchanger_2,tigrfam_NaH_exchanger	-	no_errors	SLC9A4	HGNC	ENSG00000180251				115	0	0	98	23	19.0083
CCDC138	0	genome.wustl.edu	37	2	109411080	109411080	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	109411080	109411080	G	T	SNP	CCDC138	ENST00000295124	human	ensembl	74_37	+1	known	missense	c.479	p.S160I	0.000	NULL	NULL	-	no_errors	CCDC138	HGNC	ENSG00000163006				67	0	0	67	12	15.1899
ZC3H6	0	genome.wustl.edu	37	2	113069467	113069467	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	113069467	113069467	A	C	SNP	ZC3H6	ENST00000343936	human	ensembl	74_37	+1	known	missense	c.700	p.T234P	0.010	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H6	HGNC	ENSG00000188177				53	0	0	44	9	16.9811
RGPD8	0	genome.wustl.edu	37	2	113146043	113146043	+	Silent	SNP	T	T	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	113146043	113146043	T	C	SNP	RGPD8	ENST00000302558	human	ensembl	74_37	-1	known	silent	c.4479	p.V1493	0.977	NULL	pfam_Ran_bind_dom,pfam_GRIP,pfam_TPR_1,pfam_TPR_2,superfamily_GRIP,smart_TPR_repeat,smart_Ran_bind_dom,smart_GRIP,pfscan_GRIP,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Ran_bind_dom	-	no_errors	RGPD8	HGNC	ENSG00000169629				260	0	0	216	25	10.3734
INHBB	0	genome.wustl.edu	37	2	121106806	121106806	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	121106806	121106806	C	T	SNP	INHBB	ENST00000295228	human	ensembl	74_37	+1	known	missense	c.580	p.R194W	1.000	pfam_TGF-b_N,prints_Inhibin_betaB	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C,prints_Inhibin_betaB,prints_Inhibin_asu	-	no_errors	INHBB	HGNC	ENSG00000163083				116	1	0.854701	78	13	14.2857
GLI2	0	genome.wustl.edu	37	2	121746625	121746625	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	121746625	121746625	C	T	SNP	GLI2	ENST00000361492	human	ensembl	74_37	+1	known	silent	c.3135	p.D1045	0.168	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI2	HGNC	ENSG00000074047				47	0	0	31	11	26.1905
HS6ST1	0	genome.wustl.edu	37	2	129025949	129025949	+	Silent	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	129025949	129025949	G	A	SNP	HS6ST1	ENST00000259241	human	ensembl	74_37	-1	known	silent	c.1023	p.N341	0.998	pfam_Sulfotransferase	pfam_Sulfotransferase,superfamily_P-loop_NTPase	-	no_errors	HS6ST1	HGNC	ENSG00000136720				79	0	0	56	10	15.1515
ARHGEF4	0	genome.wustl.edu	37	2	131688588	131688588	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	131688588	131688588	T	C	SNP	ARHGEF4	ENST00000326016	human	ensembl	74_37	+1	known	missense	c.58	p.F20L	0.000	NULL	pfam_DH-domain,pfam_SH3_domain,pfam_SH3_2,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_SH3_domain,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ARHGEF4	HGNC	ENSG00000136002				79	0	0	61	13	17.5676
ACMSD	0	genome.wustl.edu	37	2	135628620	135628620	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	135628620	135628620	C	T	SNP	ACMSD	ENST00000356140	human	ensembl	74_37	+1	known	silent	c.666	p.F222	1.000	pfam_Amidohydro_2	pfam_Amidohydro_2	-	no_errors	ACMSD	HGNC	ENSG00000153086				62	0	0	36	5	12.1951
ACMSD	0	genome.wustl.edu	37	2	135630090	135630090	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	135630090	135630090	G	A	SNP	ACMSD	ENST00000356140	human	ensembl	74_37	+1	known	missense	c.728	p.R243H	1.000	pfam_Amidohydro_2	pfam_Amidohydro_2	-	no_errors	ACMSD	HGNC	ENSG00000153086				62	0	0	45	8	15.0943
RAB3GAP1	0	genome.wustl.edu	37	2	135848570	135848570	+	Silent	SNP	T	T	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	135848570	135848570	T	C	SNP	RAB3GAP1	ENST00000264158	human	ensembl	74_37	+1	known	silent	c.153	p.G51	0.977	NULL	NULL	-	no_errors	RAB3GAP1	HGNC	ENSG00000115839				89	0	0	86	19	18.0952
KYNU	0	genome.wustl.edu	37	2	143718341	143718341	+	Splice_Site	SNP	T	T	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	143718341	143718341	T	C	SNP	KYNU	ENST00000264170	human	ensembl	74_37	+1	known	splice_site	c.729+2	e7+2	1.000	-	-	-	no_errors	KYNU	HGNC	ENSG00000115919				122	0	0	93	21	18.4211
NEB	0	genome.wustl.edu	37	2	152374867	152374867	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	152374867	152374867	G	T	SNP	NEB	ENST00000397345	human	ensembl	74_37	-1	known	missense	c.22765	p.L7589I	1.000	pfam_Nebulin_35r-motif,smart_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,pfscan_Nebulin_35r-motif,pfscan_SH3_domain,prints_Nebulin	-	no_errors	NEB	HGNC	ENSG00000183091				370	0	0	345	62	15.2334
NEB	0	genome.wustl.edu	37	2	152427010	152427010	+	Splice_Site	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	152427010	152427010	C	T	SNP	NEB	ENST00000397345	human	ensembl	74_37	-1	known	splice_site	c.17118+1	e106+1	1.000	-	-	-	no_errors	NEB	HGNC	ENSG00000183091				28	0	0	19	3	13.6364
RPRM	0	genome.wustl.edu	37	2	154334943	154334943	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	154334943	154334943	G	A	SNP	RPRM	ENST00000325926	human	ensembl	74_37	-1	known	missense	c.137	p.P46L	1.000	NULL	NULL	-	no_errors	RPRM	HGNC	ENSG00000177519				53	0	0	48	10	17.2414
KCNJ3	0	genome.wustl.edu	37	2	155555820	155555820	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	155555820	155555820	G	A	SNP	KCNJ3	ENST00000295101	human	ensembl	74_37	+1	known	missense	c.533	p.G178D	1.000	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir3.1,prints_K_chnl_inward-rec_Kir	-	no_errors	KCNJ3	HGNC	ENSG00000162989				85	0	0	55	14	20.2899
ITGB6	0	genome.wustl.edu	37	2	161029225	161029225	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	161029225	161029225	C	T	SNP	ITGB6	ENST00000283249	human	ensembl	74_37	-1	known	missense	c.776	p.R259Q	1.000	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,smart_Integrin_bsu_N,prints_Integrin_bsu	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_Integrin_bsu_cyt_dom,pfam_Integrin_bsu_tail,pfam_EGF_extracell,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like_fold,smart_Integrin_bsu_N,prints_Integrin_bsu	-	no_errors	ITGB6	HGNC	ENSG00000115221				156	0	0	154	27	14.9171
TBR1	0	genome.wustl.edu	37	2	162280612	162280612	+	Silent	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	162280612	162280612	G	A	SNP	TBR1	ENST00000389554	human	ensembl	74_37	+1	known	silent	c.1923	p.S641	0.833	NULL	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBR1	HGNC	ENSG00000136535				24	0	0	16	7	30.4348
SCN2A	0	genome.wustl.edu	37	2	166243339	166243339	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	166243339	166243339	G	T	SNP	SCN2A	ENST00000283256	human	ensembl	74_37	+1	known	missense	c.4635	p.M1545I	1.000	NULL	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN2A	HGNC	ENSG00000136531				83	0	0	49	13	20.9677
XIRP2	0	genome.wustl.edu	37	2	168114854	168114854	+	Silent	SNP	T	T	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	168114854	168114854	T	C	SNP	XIRP2	ENST00000420519	human	ensembl	74_37	+1	known	silent	c.1897	p.L633	0.000	NULL	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	XIRP2	HGNC	ENSG00000163092				78	0	0	98	6	5.76923
WIPF1	0	genome.wustl.edu	37	2	175436475	175436475	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	175436475	175436475	C	T	SNP	WIPF1	ENST00000272746	human	ensembl	74_37	-1	known	missense	c.1058	p.R353H	0.972	NULL	smart_WH2_dom,pfscan_WH2_dom	-	no_errors	WIPF1	HGNC	ENSG00000115935				158	0	0	117	13	10
CHN1	0	genome.wustl.edu	37	2	175666460	175666460	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	175666460	175666460	G	A	SNP	CHN1	ENST00000409900	human	ensembl	74_37	-1	known	missense	c.1183	p.R395W	0.988	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pirsf_N-chimaerin,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_SH2,superfamily_Rho_GTPase_activation_prot,smart_SH2,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pirsf_N-chimaerin,pfscan_SH2,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom,prints_DAG/PE-bd	-	no_errors	CHN1	HGNC	ENSG00000128656				154	0	0	122	21	14.6853
CHN1	0	genome.wustl.edu	37	2	175677082	175677082	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	175677082	175677082	G	A	SNP	CHN1	ENST00000409900	human	ensembl	74_37	-1	known	missense	c.841	p.R281W	0.980	superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pirsf_N-chimaerin,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_SH2,superfamily_Rho_GTPase_activation_prot,smart_SH2,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pirsf_N-chimaerin,pfscan_SH2,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom,prints_DAG/PE-bd	-	no_errors	CHN1	HGNC	ENSG00000128656				153	0	0	125	31	19.8718
HOXD1	0	genome.wustl.edu	37	2	177054043	177054043	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	177054043	177054043	G	A	SNP	HOXD1	ENST00000331462	human	ensembl	74_37	+1	known	missense	c.514	p.D172N	0.773	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	HOXD1	HGNC	ENSG00000128645				33	0	0	26	6	18.75
PLEKHA3	0	genome.wustl.edu	37	2	179350390	179350390	+	Silent	SNP	T	T	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	179350390	179350390	T	G	SNP	PLEKHA3	ENST00000234453	human	ensembl	74_37	+1	known	silent	c.63	p.V21	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHA3	HGNC	ENSG00000116095				129	0	0	93	25	21.1864
PLEKHA3	0	genome.wustl.edu	37	2	179365829	179365829	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	179365829	179365829	G	A	SNP	PLEKHA3	ENST00000234453	human	ensembl	74_37	+1	known	missense	c.701	p.R234Q	0.996	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHA3	HGNC	ENSG00000116095				150	0	0	128	8	5.88235
TTN	0	genome.wustl.edu	37	2	179479312	179479312	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	179479312	179479312	A	T	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.41225	p.V13742D	0.991	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				82	0	0	58	8	12.1212
TTN	0	genome.wustl.edu	37	2	179501146	179501146	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	179501146	179501146	T	C	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.33604	p.T11202A	1.000	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				55	0	0	42	11	20.7547
TTN	0	genome.wustl.edu	37	2	179594876	179594876	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	179594876	179594876	C	T	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.14519	p.C4840Y	1.000	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				49	0	0	34	9	20.9302
TTN	0	genome.wustl.edu	37	2	179605699	179605699	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	179605699	179605699	T	G	SNP	TTN	ENST00000342175	human	ensembl	74_37	-1	known	missense	c.11748	p.E3916D	1.000	superfamily_RNaseH-like_dom	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				157	0	0	107	18	14.4
TTN	0	genome.wustl.edu	37	2	179641123	179641123	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	179641123	179641123	G	T	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.5468	p.A1823D	1.000	superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				178	0	0	137	26	15.9509
ZNF804A	0	genome.wustl.edu	37	2	185801192	185801192	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	185801192	185801192	G	T	SNP	ZNF804A	ENST00000302277	human	ensembl	74_37	+1	known	nonsense	c.1069	p.G357*	0.018	NULL	pfam_Znf_C2H2_jaz	-	no_errors	ZNF804A	HGNC	ENSG00000170396				49	0	0	28	8	22.2222
STAT1	0	genome.wustl.edu	37	2	191874714	191874714	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	191874714	191874714	C	T	SNP	STAT1	ENST00000361099	human	ensembl	74_37	-1	known	missense	c.16	p.E6K	0.948	pfam_STAT_TF_prot_interaction,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_STAT1_TAZ2-bd_C,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,pfscan_SH2	-	no_errors	STAT1	HGNC	ENSG00000115415				95	0	0	64	17	20.9877
DNAH7	0	genome.wustl.edu	37	2	196749503	196749503	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	196749503	196749503	C	A	SNP	DNAH7	ENST00000312428	human	ensembl	74_37	-1	known	missense	c.5569	p.V1857F	0.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,superfamily_P-loop_NTPase,superfamily_Signal_recog_particle_SRP9/14,smart_AAA+_ATPase,pfscan_EF_hand_dom	-	no_errors	DNAH7	HGNC	ENSG00000118997				44	0	0	24	8	25
ANKRD44	0	genome.wustl.edu	37	2	197986170	197986170	+	Silent	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	197986170	197986170	G	A	SNP	ANKRD44	ENST00000328737	human	ensembl	74_37	-1	known	silent	c.717	p.N239	0.886	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD44	HGNC	ENSG00000065413				64	0	0	45	13	22.4138
AOX1	0	genome.wustl.edu	37	2	201501758	201501758	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	201501758	201501758	C	T	SNP	AOX1	ENST00000374700	human	ensembl	74_37	+1	known	missense	c.2471	p.A824V	1.000	pfam_AldOxase/xan_DH_Mopterin-bd,superfamily_AldOxase/xan_DH_Mopterin-bd,pirsf_Ald_Oxase/xanthine_DH,tigrfam_Aldehyde_oxidase	pfam_AldOxase/xan_DH_Mopterin-bd,pfam_Mopterin_DH_FAD-bd,pfam_Ald_Oxase/Xan_DH_a/b,pfam_2Fe-2S-bd,pfam_CO_DH_flav_C,pfam_2Fe-2S_ferredoxin-type,superfamily_AldOxase/xan_DH_Mopterin-bd,superfamily_FAD-bd_2,superfamily_Ald_Oxase/Xan_DH_a/b,superfamily_2Fe-2S-bd,superfamily_CO_DH_flav_C,superfamily_2Fe-2S_ferredoxin-type,pirsf_Ald_Oxase/xanthine_DH,pfscan_2Fe-2S_ferredoxin-type,tigrfam_Aldehyde_oxidase	-	no_errors	AOX1	HGNC	ENSG00000138356				47	0	0	52	3	5.45455
CASP8	0	genome.wustl.edu	37	2	202136270	202136270	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	202136270	202136270	A	C	SNP	CASP8	ENST00000358485	human	ensembl	74_37	+1	known	missense	c.514	p.S172R	0.000	pfam_DED,superfamily_DEATH-like_dom,smart_DED,pfscan_DED	pfam_DED,pfam_Pept_C14_caspase,superfamily_DEATH-like_dom,smart_DED,smart_Pept_C14A_p45_core,pfscan_DED,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20,prints_Pept_C14A_p45_core	-	no_errors	CASP8	HGNC	ENSG00000064012				62	0	0	47	16	25.3968
BMPR2	0	genome.wustl.edu	37	2	203329571	203329571	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	203329571	203329571	C	T	SNP	BMPR2	ENST00000374580	human	ensembl	74_37	+1	known	missense	c.116	p.P39L	0.999	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	BMPR2	HGNC	ENSG00000204217				77	0	0	66	5	7.04225
RAPH1	0	genome.wustl.edu	37	2	204354393	204354393	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	204354393	204354393	C	A	SNP	RAPH1	ENST00000374493	human	ensembl	74_37	-1	known	missense	c.646	p.A216S	1.000	NULL	pfam_Ras-assoc,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,smart_Ras-assoc,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,prints_Paxillin	-	no_errors	RAPH1	HGNC	ENSG00000173166				180	0	0	147	11	6.96203
ZDBF2	0	genome.wustl.edu	37	2	207172264	207172264	+	Silent	SNP	T	T	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	207172264	207172264	T	C	SNP	ZDBF2	ENST00000374423	human	ensembl	74_37	+1	known	silent	c.3012	p.S1004	0.000	NULL	pfam_Znf_DBF,smart_Znf_DBF	-	no_errors	ZDBF2	HGNC	ENSG00000204186				100	0	0	90	19	17.4312
ABCA12	0	genome.wustl.edu	37	2	215884381	215884381	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	215884381	215884381	G	A	SNP	ABCA12	ENST00000272895	human	ensembl	74_37	-1	known	missense	c.1427	p.A476V	0.973	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA12	HGNC	ENSG00000144452				59	0	0	52	13	20
BCS1L	0	genome.wustl.edu	37	2	219527931	219527931	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	219527931	219527931	T	C	SNP	BCS1L	ENST00000359273	human	ensembl	74_37	+1	known	missense	c.1082	p.L361P	0.999	superfamily_P-loop_NTPase	pfam_BCS1_N,pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	BCS1L	HGNC	ENSG00000074582				101	0	0	94	17	15.3153
CDK5R2	0	genome.wustl.edu	37	2	219825256	219825256	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	219825256	219825256	C	T	SNP	CDK5R2	ENST00000302625	human	ensembl	74_37	+1	known	silent	c.714	p.F238	1.000	pfam_CDK5_activator,superfamily_Cyclin-like,pirsf_CDK5_activator	pfam_CDK5_activator,superfamily_Cyclin-like,pirsf_CDK5_activator	-	no_errors	CDK5R2	HGNC	ENSG00000171450				177	1	0.561798	134	31	18.7879
SPEG	0	genome.wustl.edu	37	2	220307889	220307889	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	220307889	220307889	C	T	SNP	SPEG	ENST00000403148	human	ensembl	74_37	+1	known	silent	c.93	p.G31	0.082	NULL	NULL	-	no_errors	SPEG	HGNC	ENSG00000072195				223	0	0	172	19	9.94764
SPEG	0	genome.wustl.edu	37	2	220355249	220355249	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	220355249	220355249	C	T	SNP	SPEG	ENST00000312358	human	ensembl	74_37	+1	novel	silent	c.9040	p.L3014	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ig_I-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	SPEG	HGNC	ENSG00000072195				62	0	0	46	9	16.3636
CHPF	0	genome.wustl.edu	37	2	220404687	220404687	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	220404687	220404687	C	T	SNP	CHPF	ENST00000243776	human	ensembl	74_37	-1	known	silent	c.1746	p.V582	1.000	pfam_Chond_GalNAc	pfam_Chond_GalNAc	-	no_errors	CHPF	HGNC	ENSG00000123989				85	0	0	67	14	17.284
MIR3132	0	genome.wustl.edu	37	2	220413838	220413838	+	RNA	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	220413838	220413838	G	A	SNP	MIR3132	ENST00000581997	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MIR3132	HGNC	ENSG00000265252				132	0	0	105	23	17.9688
NYAP2	0	genome.wustl.edu	37	2	226446717	226446717	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	226446717	226446717	C	T	SNP	NYAP2	ENST00000272907	human	ensembl	74_37	+1	known	missense	c.584	p.P195L	1.000	NULL	NULL	-	no_errors	NYAP2	HGNC	ENSG00000144460				226	0	0	185	39	17.4107
IRS1	0	genome.wustl.edu	37	2	227663080	227663080	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	227663080	227663080	C	T	SNP	IRS1	ENST00000305123	human	ensembl	74_37	-1	known	silent	c.375	p.A125	0.001	NULL	pfam_Insln_rcpt_S1,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,prints_Insln_rcpt_S1,pfscan_Pleckstrin_homology,pfscan_Insln_rcpt_S1	-	no_errors	IRS1	HGNC	ENSG00000169047				93	0	0	88	14	13.7255
COL4A4	0	genome.wustl.edu	37	2	227919390	227919390	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	227919390	227919390	C	T	SNP	COL4A4	ENST00000396625	human	ensembl	74_37	-1	known	missense	c.2780	p.G927E	0.953	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A4	HGNC	ENSG00000081052				59	0	0	64	11	14.6667
TRIP12	0	genome.wustl.edu	37	2	230650558	230650558	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	230650558	230650558	C	T	SNP	TRIP12	ENST00000283943	human	ensembl	74_37	-1	known	missense	c.4784	p.R1595Q	1.000	superfamily_HECT,pfscan_HECT	pfam_HECT,superfamily_HECT,superfamily_ARM-type_fold,smart_HECT,pfscan_HECT,pfscan_WWE-dom	-	no_errors	TRIP12	HGNC	ENSG00000153827				141	0	0	114	21	15.5556
SP140	0	genome.wustl.edu	37	2	231134619	231134619	+	Silent	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	231134619	231134619	A	G	SNP	SP140	ENST00000392045	human	ensembl	74_37	+1	known	silent	c.1395	p.P465	0.211	NULL	pfam_Sp100,pfam_SAND_dom,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_SAND_dom-like,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_SAND_dom,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_PHD-finger,pfscan_SAND_dom,pfscan_Bromodomain	-	no_errors	SP140	HGNC	ENSG00000079263				67	0	0	75	6	7.40741
CHRND	0	genome.wustl.edu	37	2	233398812	233398812	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	233398812	233398812	C	T	SNP	CHRND	ENST00000258385	human	ensembl	74_37	+1	known	missense	c.1219	p.R407W	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRND	HGNC	ENSG00000135902				101	0	0	86	20	18.8679
GIGYF2	0	genome.wustl.edu	37	2	233684582	233684582	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	233684582	233684582	C	T	SNP	GIGYF2	ENST00000373566	human	ensembl	74_37	+1	known	nonsense	c.2482	p.R828*	1.000	NULL	pfam_GYF,superfamily_GYF,smart_GYF,pfscan_GYF	-	no_errors	GIGYF2	HGNC	ENSG00000204120				55	0	0	34	5	12.8205
AGAP1	0	genome.wustl.edu	37	2	236403404	236403404	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	236403404	236403404	C	A	SNP	AGAP1	ENST00000304032	human	ensembl	74_37	+1	known	missense	c.74	p.P25H	1.000	NULL	pfam_ArfGAP,pfam_MIRO-like,pfam_Small_GTPase,pfam_Ankyrin_rpt,pfam_Pleckstrin_homology,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP,prints_Small_GTPase	-	no_errors	AGAP1	HGNC	ENSG00000157985				86	0	0	55	7	11.2903
COL6A3	0	genome.wustl.edu	37	2	238285718	238285718	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	238285718	238285718	C	T	SNP	COL6A3	ENST00000295550	human	ensembl	74_37	-1	known	missense	c.2767	p.A923T	0.622	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,smart_VWF_A,smart_Prot_inh_Kunz-m,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL6A3	HGNC	ENSG00000163359				86	0	0	76	14	15.5556
COL6A3	0	genome.wustl.edu	37	2	238287277	238287277	+	Splice_Site	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	238287277	238287277	A	G	SNP	COL6A3	ENST00000295550	human	ensembl	74_37	-1	known	splice_site	c.2497+2	e5+2	1.000	-	-	-	no_errors	COL6A3	HGNC	ENSG00000163359				234	1	0.425532	191	32	14.3498
TRAF3IP1	0	genome.wustl.edu	37	2	239306240	239306240	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	239306240	239306240	C	T	SNP	TRAF3IP1	ENST00000373327	human	ensembl	74_37	+1	known	silent	c.1830	p.D610	0.974	NULL	NULL	-	no_errors	TRAF3IP1	HGNC	ENSG00000204104				135	0	0	99	12	10.8108
PASK	0	genome.wustl.edu	37	2	242076594	242076594	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	242076594	242076594	C	T	SNP	PASK	ENST00000358649	human	ensembl	74_37	-1	known	missense	c.962	p.S321N	0.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PAS_fold,superfamily_Kinase-like_dom,superfamily_PAS,smart_PAS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_PAS,pfscan_Prot_kinase_dom,tigrfam_PAS	-	no_errors	PASK	HGNC	ENSG00000115687				102	0	0	74	19	20.4301
ANO7	0	genome.wustl.edu	37	2	242163549	242163549	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	242163549	242163549	C	T	SNP	ANO7	ENST00000274979	human	ensembl	74_37	+1	known	missense	c.2783	p.A928V	0.000	NULL	pfam_Anoctamin	-	no_errors	ANO7	HGNC	ENSG00000146205				74	0	0	61	7	10.2941
HDLBP	0	genome.wustl.edu	37	2	242170236	242170236	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	242170236	242170236	C	T	SNP	HDLBP	ENST00000310931	human	ensembl	74_37	-1	known	missense	c.3412	p.V1138I	1.000	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	HDLBP	HGNC	ENSG00000115677				90	0	0	55	9	14.0625
FARP2	0	genome.wustl.edu	37	2	242432348	242432348	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	242432348	242432348	A	G	SNP	FARP2	ENST00000264042	human	ensembl	74_37	+1	known	missense	c.2792	p.Q931R	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_FERM_PH-like_C,pfam_FERM_N,pfam_FERM_central,pfam_FERM-adjacent,superfamily_DH-domain,superfamily_FERM_central,smart_Band_41_domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_FERM_domain,pfscan_Pleckstrin_homology,pfscan_DH-domain,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	FARP2	HGNC	ENSG00000006607				66	0	0	46	4	8
ASXL2	0	genome.wustl.edu	37	2	25965810	25965810	+	Silent	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	25965810	25965810	G	A	SNP	ASXL2	ENST00000435504	human	ensembl	74_37	-1	known	silent	c.3396	p.G1132	1.000	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	ASXL2	HGNC	ENSG00000143970				193	0	0	155	33	17.5532
RNU6-1117P	0	genome.wustl.edu	37	2	35696761	35696761	+	RNA	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	35696761	35696761	C	T	SNP	RNU6-1117P	ENST00000384525	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.044	-	-	-	no_errors	RNU6-1117P	HGNC	ENSG00000207255				11	0	0	8	4	33.3333
ALLC	0	genome.wustl.edu	37	2	3743890	3743890	+	Silent	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	3743890	3743890	G	A	SNP	ALLC	ENST00000252505	human	ensembl	74_37	+1	known	silent	c.693	p.A231	0.136	pfam_Allantoicase_dom,superfamily_Galactose-bd-like,tigrfam_Allantoicase	pfam_Allantoicase_dom,superfamily_Galactose-bd-like,tigrfam_Allantoicase	-	no_errors	ALLC	HGNC	ENSG00000151360				51	0	0	45	8	15.0943
TMEM178A	0	genome.wustl.edu	37	2	39893185	39893185	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	39893185	39893185	C	T	SNP	TMEM178A	ENST00000281961	human	ensembl	74_37	+1	known	missense	c.71	p.T24M	1.000	NULL	NULL	-	no_errors	TMEM178A	HGNC	ENSG00000152154				37	0	0	22	5	18.5185
SLC8A1	0	genome.wustl.edu	37	2	40657279	40657279	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	40657279	40657279	C	A	SNP	SLC8A1	ENST00000332839	human	ensembl	74_37	-1	known	nonsense	c.142	p.E48*	0.145	prints_NaCa_exhngr1,tigrfam_Na_Ca_Ex	pfam_NaCa_Exmemb,pfam_Calx_beta,smart_Calx_beta,pfscan_DnaJ_domain,prints_Na_Ca_Ex,prints_NaCa_exhngr1,tigrfam_Na_Ca_Ex	-	no_errors	SLC8A1	HGNC	ENSG00000183023				141	0	0	108	16	12.9032
ABCG5	0	genome.wustl.edu	37	2	44051074	44051074	+	Silent	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	44051074	44051074	G	A	SNP	ABCG5	ENST00000260645	human	ensembl	74_37	-1	known	silent	c.1302	p.G434	1.000	pfam_ABC_2_trans	pfam_ABC_2_trans,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCG5	HGNC	ENSG00000138075				69	0	0	46	9	16.3636
SIX2	0	genome.wustl.edu	37	2	45235980	45235980	+	Silent	SNP	T	T	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	45235980	45235980	T	C	SNP	SIX2	ENST00000303077	human	ensembl	74_37	-1	known	silent	c.270	p.A90	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	SIX2	HGNC	ENSG00000170577				92	0	0	78	14	15.2174
EPAS1	0	genome.wustl.edu	37	2	46583304	46583304	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	46583304	46583304	G	A	SNP	EPAS1	ENST00000263734	human	ensembl	74_37	+1	known	missense	c.232	p.E78K	0.998	superfamily_bHLH_dom	pfam_PAS_fold_3,pfam_HIF-1_TAD_C,pfam_HIF_alpha_subunit,pfam_PAS_fold,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,smart_PAC,prints_Nuc_translocat,pfscan_PAS,pfscan_bHLH_dom,tigrfam_PAS	-	no_errors	EPAS1	HGNC	ENSG00000116016				102	0	0	68	14	17.0732
FBXO11	0	genome.wustl.edu	37	2	48066832	48066832	+	Silent	SNP	T	T	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	48066832	48066832	T	C	SNP	FBXO11	ENST00000403359	human	ensembl	74_37	-1	known	silent	c.309	p.R103	1.000	NULL	pfam_Znf_N-recognin,pfam_F-box_dom,superfamily_Pectin_lyase_fold/virulence,superfamily_F-box_dom,smart_F-box_dom,smart_PbH1,smart_Carb-bd_sugar_hydrolysis-dom,smart_Znf_N-recognin_met,pfscan_F-box_dom,pfscan_Znf_N-recognin,tigrfam_Para_beta_helix_rpt-2	-	no_errors	FBXO11	HGNC	ENSG00000138081				88	0	0	72	12	14.2857
MTIF2	0	genome.wustl.edu	37	2	55490842	55490842	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	55490842	55490842	C	T	SNP	MTIF2	ENST00000263629	human	ensembl	74_37	-1	known	nonsense	c.153	p.W51*	0.000	NULL	pfam_EF_GTP-bd_dom,pfam_TIF_IF2_dom3,pfam_Transl_elong_EFTu/EF1A_2,pfam_MIRO-like,pfam_GTP_binding_domain,pfam_Small_GTPase,pfam_SRP_receptor_beta_su,superfamily_P-loop_NTPase,superfamily_TIF_IF2_dom3,superfamily_Transl_B-barrel,tigrfam_Small_GTP-bd_dom	-	no_errors	MTIF2	HGNC	ENSG00000085760				108	0	0	83	11	11.7021
BCL11A	0	genome.wustl.edu	37	2	60688703	60688703	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	60688703	60688703	C	T	SNP	BCL11A	ENST00000335712	human	ensembl	74_37	-1	known	silent	c.1344	p.P448	0.999	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	BCL11A	HGNC	ENSG00000119866				90	0	0	54	12	18.1818
SPRED2	0	genome.wustl.edu	37	2	65571937	65571937	+	Silent	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	65571937	65571937	G	A	SNP	SPRED2	ENST00000356388	human	ensembl	74_37	-1	known	silent	c.120	p.R40	0.907	pfam_WH1/EVH1,smart_WH1/EVH1,pfscan_WH1/EVH1	pfam_Sprouty,pfam_WH1/EVH1,smart_WH1/EVH1,pfscan_WH1/EVH1	-	no_errors	SPRED2	HGNC	ENSG00000198369				45	0	0	30	6	16.6667
AAK1	0	genome.wustl.edu	37	2	69748037	69748037	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	69748037	69748037	C	A	SNP	AAK1	ENST00000409085	human	ensembl	74_37	-1	known	missense	c.1139	p.G380V	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	AAK1	HGNC	ENSG00000115977				197	1	0.505051	129	35	21.3415
MPHOSPH10	0	genome.wustl.edu	37	2	71365669	71365669	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	71365669	71365669	C	T	SNP	MPHOSPH10	ENST00000244230	human	ensembl	74_37	+1	known	missense	c.1148	p.P383L	1.000	pfam_Mpp10,pirsf_snoRNP_Mpp10	pfam_Mpp10,pirsf_snoRNP_Mpp10	-	no_errors	MPHOSPH10	HGNC	ENSG00000124383				48	0	0	33	9	21.4286
DQX1	0	genome.wustl.edu	37	2	74749707	74749707	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	74749707	74749707	C	A	SNP	DQX1	ENST00000393951	human	ensembl	74_37	-1	known	missense	c.1495	p.A499S	0.988	pfam_Helicase-assoc_dom,superfamily_P-loop_NTPase,smart_Helicase-assoc_dom	pfam_Helicase-assoc_dom,pfam_DUF1605,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd	-	no_errors	DQX1	HGNC	ENSG00000144045				107	0	0	86	16	15.6863
LRRTM4	0	genome.wustl.edu	37	2	77746748	77746748	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	77746748	77746748	C	T	SNP	LRRTM4	ENST00000409911	human	ensembl	74_37	-1	known	missense	c.250	p.G84S	0.990	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRTM4	HGNC	ENSG00000176204				111	0	0	77	18	18.9474
RETSAT	0	genome.wustl.edu	37	2	85581587	85581587	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	85581587	85581587	G	T	SNP	RETSAT	ENST00000295802	human	ensembl	74_37	-1	known	missense	c.44	p.A15D	0.000	NULL	pfam_Amino_oxidase,pfam_FAD_bind_dom,pfam_FAD-dep_OxRdtase,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_mOase_FAD-bd	-	no_errors	RETSAT	HGNC	ENSG00000042445				163	0	0	117	26	18.1818
ELMOD3	0	genome.wustl.edu	37	2	85604483	85604483	+	Silent	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	85604483	85604483	A	G	SNP	ELMOD3	ENST00000315658	human	ensembl	74_37	+1	known	silent	c.624	p.T208	0.908	pfam_Engulfment_cell_motility_ELMO	pfam_Engulfment_cell_motility_ELMO	-	no_errors	ELMOD3	HGNC	ENSG00000115459				51	0	0	53	6	10.1695
KDM3A	0	genome.wustl.edu	37	2	86712114	86712114	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	86712114	86712114	G	A	SNP	KDM3A	ENST00000312912	human	ensembl	74_37	+1	known	nonsense	c.3144	p.W1048*	1.000	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	KDM3A	HGNC	ENSG00000115548				37	0	0	36	3	7.69231
ACTR1B	0	genome.wustl.edu	37	2	98274469	98274469	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	98274469	98274469	T	C	SNP	ACTR1B	ENST00000289228	human	ensembl	74_37	-1	known	missense	c.862	p.M288V	1.000	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,smart_Actin-related,prints_Actin-related	-	no_errors	ACTR1B	HGNC	ENSG00000115073				131	0	0	90	5	5.26316
SNORD17	0	genome.wustl.edu	37	20	17943488	17943488	+	RNA	SNP	T	T	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	20	17943488	17943488	T	G	SNP	SNORD17	ENST00000390930	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.073	-	-	-	no_errors	SNORD17	HGNC	ENSG00000212232				83	0	0	67	15	18.2927
ZNF337	0	genome.wustl.edu	37	20	25656021	25656021	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	20	25656021	25656021	G	A	SNP	ZNF337	ENST00000252979	human	ensembl	74_37	-1	known	nonsense	c.1903	p.R635*	0.495	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF337	HGNC	ENSG00000130684				137	0	0	102	11	9.73451
ZNF337	0	genome.wustl.edu	37	20	25657112	25657112	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	20	25657112	25657112	C	T	SNP	ZNF337	ENST00000252979	human	ensembl	74_37	-1	known	missense	c.812	p.R271Q	0.405	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF337	HGNC	ENSG00000130684				214	0	0	194	52	21.1382
IDH3B	0	genome.wustl.edu	37	20	2639205	2639205	+	RNA	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	20	2639205	2639205	G	A	SNP	IDH3B	ENST00000477689	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.066	-	-	-	no_errors	IDH3B	HGNC	ENSG00000101365				31	0	0	30	2	6.25
E2F1	0	genome.wustl.edu	37	20	32264963	32264963	+	Silent	SNP	G	G	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	20	32264963	32264963	G	T	SNP	E2F1	ENST00000343380	human	ensembl	74_37	-1	known	silent	c.1014	p.P338	0.035	NULL	pfam_E2F_TDP	-	no_errors	E2F1	HGNC	ENSG00000101412				78	0	0	63	11	14.8649
RALY	0	genome.wustl.edu	37	20	32664892	32664892	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	20	32664892	32664892	C	A	SNP	RALY	ENST00000246194	human	ensembl	74_37	+1	known	missense	c.717	p.S239R	0.008	pirsf_hnRNP_C_Raly	pfam_RRM_dom,smart_RRM_dom,pirsf_hnRNP_C_Raly,pfscan_RRM_dom	-	no_errors	RALY	HGNC	ENSG00000125970				30	0	0	20	6	23.0769
SIGLEC1	0	genome.wustl.edu	37	20	3683917	3683917	+	Silent	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	20	3683917	3683917	A	G	SNP	SIGLEC1	ENST00000344754	human	ensembl	74_37	-1	known	silent	c.1155	p.T385	0.000	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	SIGLEC1	HGNC	ENSG00000088827				82	0	0	57	14	19.7183
PPP1R16B	0	genome.wustl.edu	37	20	37464809	37464809	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	20	37464809	37464809	G	A	SNP	PPP1R16B	ENST00000299824	human	ensembl	74_37	+1	known	missense	c.241	p.A81T	0.998	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pirsf_Pase-1_reg_su_16AB_euk,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pirsf_Pase-1_reg_su_16AB_euk,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	PPP1R16B	HGNC	ENSG00000101445				53	0	0	40	7	14.8936
PTPRT	0	genome.wustl.edu	37	20	40743943	40743943	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	20	40743943	40743943	G	A	SNP	PTPRT	ENST00000373198	human	ensembl	74_37	-1	known	nonsense	c.3052	p.R1018*	0.252	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRT	HGNC	ENSG00000196090				105	0	0	61	13	17.5676
PTPRT	0	genome.wustl.edu	37	20	40864897	40864897	+	Silent	SNP	T	T	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	20	40864897	40864897	T	G	SNP	PTPRT	ENST00000373198	human	ensembl	74_37	-1	known	silent	c.2371	p.R791	1.000	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRT	HGNC	ENSG00000196090				99	0	0	85	16	15.8416
PTPRT	0	genome.wustl.edu	37	20	40980816	40980816	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	20	40980816	40980816	T	C	SNP	PTPRT	ENST00000373198	human	ensembl	74_37	-1	known	missense	c.1670	p.Y557C	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRT	HGNC	ENSG00000196090				133	0	0	91	22	19.469
NEURL2	0	genome.wustl.edu	37	20	44519036	44519036	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	20	44519036	44519036	C	T	SNP	NEURL2	ENST00000372518	human	ensembl	74_37	-1	known	missense	c.595	p.D199N	0.919	pfscan_Neu_Z	pfam_Neu_Z,pfam_SOCS_C,smart_Neu_Z,smart_SOCS_C,pfscan_Neu_Z,pfscan_SOCS_C	-	no_errors	NEURL2	HGNC	ENSG00000124257				80	0	0	60	14	18.9189
ZNF334	0	genome.wustl.edu	37	20	45131154	45131154	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	20	45131154	45131154	C	T	SNP	ZNF334	ENST00000347606	human	ensembl	74_37	-1	known	missense	c.824	p.R275H	0.001	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF334	HGNC	ENSG00000198185				151	0	0	119	16	11.8519
NCOA3	0	genome.wustl.edu	37	20	46267789	46267789	+	Silent	SNP	T	T	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	20	46267789	46267789	T	A	SNP	NCOA3	ENST00000371998	human	ensembl	74_37	+1	known	silent	c.2550	p.P850	0.728	pirsf_Nuclear_rcpt_coactivator	pfam_Nuc_rcpt_coact_Ncoa-typ,pfam_SRC-1,pfam_PAS_fold,superfamily_PAS,superfamily_Nuc_rcpt_coact,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,pirsf_Nuclear_rcpt_coactivator,pfscan_PAS,pfscan_bHLH_dom	-	no_errors	NCOA3	HGNC	ENSG00000124151				110	0	0	98	7	6.66667
ARFGEF2	0	genome.wustl.edu	37	20	47591403	47591403	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	20	47591403	47591403	C	T	SNP	ARFGEF2	ENST00000371917	human	ensembl	74_37	+1	known	missense	c.1766	p.T589I	1.000	superfamily_ARM-type_fold	pfam_Sec7_dom,pfam_DUF1981_Sec7_assoc,superfamily_Sec7_dom,superfamily_ARM-type_fold,smart_Sec7_dom,pfscan_Sec7_dom	-	no_errors	ARFGEF2	HGNC	ENSG00000124198				33	0	0	23	4	14.8148
ZNFX1	0	genome.wustl.edu	37	20	47855699	47855699	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	20	47855699	47855699	G	A	SNP	ZNFX1	ENST00000371754	human	ensembl	74_37	-1	known	missense	c.3565	p.P1189S	0.001	NULL	superfamily_P-loop_NTPase,superfamily_ARM-type_fold	-	no_errors	ZNFX1	HGNC	ENSG00000124201				23	0	0	19	5	20.8333
MOCS3	0	genome.wustl.edu	37	20	49575694	49575694	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	20	49575694	49575694	C	T	SNP	MOCS3	ENST00000244051	human	ensembl	74_37	+1	known	silent	c.315	p.G105	1.000	pfam_ThiF_NAD_FAD-bd,superfamily_Molybdenum_cofac_synth_MoeB	pfam_ThiF_NAD_FAD-bd,pfam_MoeZ_MoeB,pfam_Rhodanese-like_dom,superfamily_Molybdenum_cofac_synth_MoeB,smart_Rhodanese-like_dom,pfscan_Rhodanese-like_dom	-	no_errors	MOCS3	HGNC	ENSG00000124217				116	0	0	113	22	16.2963
ATP9A	0	genome.wustl.edu	37	20	50273605	50273605	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	20	50273605	50273605	C	T	SNP	ATP9A	ENST00000338821	human	ensembl	74_37	-1	known	missense	c.1378	p.V460M	1.000	pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP9A	HGNC	ENSG00000054793				66	0	0	51	7	12.069
TSHZ2	0	genome.wustl.edu	37	20	51873029	51873029	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	20	51873029	51873029	T	G	SNP	TSHZ2	ENST00000371497	human	ensembl	74_37	+1	known	missense	c.3032	p.L1011R	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	TSHZ2	HGNC	ENSG00000182463				137	0	0	129	28	17.8344
RTFDC1	0	genome.wustl.edu	37	20	55059247	55059247	+	Splice_Site	SNP	T	T	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	20	55059247	55059247	T	C	SNP	RTFDC1	ENST00000357348	human	ensembl	74_37	+1	known	splice_site	c.567+2	e6+2	1.000	-	-	-	no_errors	RTFDC1	HGNC	ENSG00000022277				133	0	0	149	31	17.2222
PMEPA1	0	genome.wustl.edu	37	20	56234599	56234599	+	Silent	SNP	T	T	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	20	56234599	56234599	T	C	SNP	PMEPA1	ENST00000341744	human	ensembl	74_37	-1	known	silent	c.264	p.S88	1.000	NULL	NULL	-	no_errors	PMEPA1	HGNC	ENSG00000124225				30	0	0	24	8	25
CDH26	0	genome.wustl.edu	37	20	58562650	58562650	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	20	58562650	58562650	C	T	SNP	CDH26	ENST00000244047	human	ensembl	74_37	+1	known	missense	c.980	p.S327L	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH26	HGNC	ENSG00000124215				83	0	0	78	5	6.0241
CDH26	0	genome.wustl.edu	37	20	58562651	58562651	+	Silent	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	20	58562651	58562651	G	A	SNP	CDH26	ENST00000244047	human	ensembl	74_37	+1	known	silent	c.981	p.S327	0.030	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH26	HGNC	ENSG00000124215				83	0	0	70	14	16.6667
CDH4	0	genome.wustl.edu	37	20	60448911	60448911	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	20	60448911	60448911	C	T	SNP	CDH4	ENST00000360469	human	ensembl	74_37	+1	known	silent	c.1005	p.S335	0.777	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Cadherin/Desmocollin	-	no_errors	CDH4	HGNC	ENSG00000179242				189	0	0	162	25	13.369
LAMA5	0	genome.wustl.edu	37	20	60884293	60884293	+	RNA	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	20	60884293	60884293	C	T	SNP	LAMA5	ENST00000492698	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	LAMA5	HGNC	ENSG00000130702				12	0	0	6	2	25
LAMA5	0	genome.wustl.edu	37	20	60893940	60893940	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	20	60893940	60893940	G	A	SNP	LAMA5	ENST00000252999	human	ensembl	74_37	-1	known	missense	c.7001	p.P2334L	0.040	pfam_Laminin_I	pfam_EGF_laminin,pfam_Laminin_I,pfam_Laminin_G,pfam_Laminin_N,pfam_Laminin_II,pfam_Laminin_B_type_IV,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N,pfscan_TNFR/NGFR_Cys_rich_reg	-	no_errors	LAMA5	HGNC	ENSG00000130702				25	0	0	23	3	11.5385
DIDO1	0	genome.wustl.edu	37	20	61512757	61512757	+	Silent	SNP	C	C	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	20	61512757	61512757	C	A	SNP	DIDO1	ENST00000266070	human	ensembl	74_37	-1	known	silent	c.4551	p.S1517	0.001	NULL	pfam_TFIIS_cen_dom,pfam_SPOC_C,pfam_Znf_PHD-finger,superfamily_TFIIS_cen_dom,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_TFS2M,pfscan_Znf_PHD-finger	-	no_errors	DIDO1	HGNC	ENSG00000101191				163	1	0.609756	159	26	14.0541
YTHDF1	0	genome.wustl.edu	37	20	61834968	61834968	+	Silent	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	20	61834968	61834968	A	G	SNP	YTHDF1	ENST00000370339	human	ensembl	74_37	-1	known	silent	c.324	p.P108	0.982	NULL	pfam_YTH_domain,pfscan_YTH_domain	-	no_errors	YTHDF1	HGNC	ENSG00000149658				129	1	0.769231	122	27	18.1208
SLC2A4RG	0	genome.wustl.edu	37	20	62373369	62373369	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	20	62373369	62373369	C	T	SNP	SLC2A4RG	ENST00000266077	human	ensembl	74_37	+1	known	missense	c.539	p.A180V	0.994	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SLC2A4RG	HGNC	ENSG00000125520				59	0	0	69	4	5.47945
ZBTB46	0	genome.wustl.edu	37	20	62384092	62384092	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	20	62384092	62384092	C	T	SNP	ZBTB46	ENST00000245663	human	ensembl	74_37	-1	known	missense	c.1345	p.E449K	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_BTB_POZ,pfam_DUF3342,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB46	HGNC	ENSG00000130584				38	0	0	44	3	6.38298
ABHD16B	0	genome.wustl.edu	37	20	62493849	62493849	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	20	62493849	62493849	G	A	SNP	ABHD16B	ENST00000369916	human	ensembl	74_37	+1	known	missense	c.956	p.R319H	0.998	NULL	pfam_AB_hydrolase_1	-	no_errors	ABHD16B	HGNC	ENSG00000183260				10	0	0	12	5	29.4118
ZNF512B	0	genome.wustl.edu	37	20	62595228	62595228	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	20	62595228	62595228	G	A	SNP	ZNF512B	ENST00000217130	human	ensembl	74_37	-1	known	missense	c.1519	p.R507C	0.954	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF512B	HGNC	ENSG00000196700				134	0	0	129	18	12.2449
BMP2	0	genome.wustl.edu	37	20	6759223	6759223	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	20	6759223	6759223	C	T	SNP	BMP2	ENST00000378827	human	ensembl	74_37	+1	known	silent	c.678	p.F226	0.970	pfam_TGF-b_N	pfam_TGF-b_N,pfam_TGF-b_C,smart_TGF-b_C,prints_Inhibin_asu	-	no_errors	BMP2	HGNC	ENSG00000125845				45	0	0	26	7	21.2121
LIPI	0	genome.wustl.edu	37	21	15579144	15579144	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	21	15579144	15579144	A	G	SNP	LIPI	ENST00000344577	human	ensembl	74_37	-1	known	missense	c.101	p.L34P	0.001	pirsf_Lipoprotein_lipase_LIPH	pfam_Lipase_N,pirsf_Lipoprotein_lipase_LIPH,prints_Lipase	-	no_errors	LIPI	HGNC	ENSG00000188992				38	0	0	36	8	18.1818
CHODL	0	genome.wustl.edu	37	21	19628904	19628904	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	21	19628904	19628904	G	T	SNP	CHODL	ENST00000299295	human	ensembl	74_37	+1	known	missense	c.158	p.S53I	1.000	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	CHODL	HGNC	ENSG00000154645				69	0	0	70	16	18.6047
TIAM1	0	genome.wustl.edu	37	21	32492823	32492823	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	21	32492823	32492823	C	T	SNP	TIAM1	ENST00000286827	human	ensembl	74_37	-1	known	missense	c.4639	p.A1547T	0.995	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Raf-like_ras-bd,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_Pleckstrin_homology,smart_Raf-like_ras-bd,smart_PDZ,smart_DH-domain,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Raf-like_ras-bd,pfscan_DH-domain	-	no_errors	TIAM1	HGNC	ENSG00000156299				106	0	0	83	13	13.5417
TIAM1	0	genome.wustl.edu	37	21	32590005	32590005	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	21	32590005	32590005	C	T	SNP	TIAM1	ENST00000286827	human	ensembl	74_37	-1	known	missense	c.2006	p.R669H	1.000	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Raf-like_ras-bd,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_Pleckstrin_homology,smart_Raf-like_ras-bd,smart_PDZ,smart_DH-domain,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Raf-like_ras-bd,pfscan_DH-domain	-	no_errors	TIAM1	HGNC	ENSG00000156299				102	0	0	85	7	7.6087
OLIG2	0	genome.wustl.edu	37	21	34399407	34399407	+	Silent	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	21	34399407	34399407	G	A	SNP	OLIG2	ENST00000333337	human	ensembl	74_37	+1	known	silent	c.237	p.S79	0.696	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	OLIG2	HGNC	ENSG00000205927				26	0	0	20	4	16.6667
PRDM15	0	genome.wustl.edu	37	21	43274836	43274836	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	21	43274836	43274836	G	A	SNP	PRDM15	ENST00000269844	human	ensembl	74_37	-1	known	missense	c.1475	p.A492V	0.066	pfscan_SET_dom	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM15	HGNC	ENSG00000141956				72	0	0	54	11	16.9231
RSPH1	0	genome.wustl.edu	37	21	43906550	43906550	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	21	43906550	43906550	C	T	SNP	RSPH1	ENST00000291536	human	ensembl	74_37	-1	known	missense	c.296	p.R99Q	0.987	pfam_MORN,smart_MORN	pfam_MORN,smart_MORN	-	no_errors	RSPH1	HGNC	ENSG00000160188				147	0	0	143	23	13.8554
TRAPPC10	0	genome.wustl.edu	37	21	45494326	45494326	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	21	45494326	45494326	G	T	SNP	TRAPPC10	ENST00000291574	human	ensembl	74_37	+1	known	missense	c.1160	p.G387V	1.000	NULL	NULL	-	no_errors	TRAPPC10	HGNC	ENSG00000160218				87	0	0	74	17	18.6813
ITGB2	0	genome.wustl.edu	37	21	46320303	46320303	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	21	46320303	46320303	C	T	SNP	ITGB2	ENST00000302347	human	ensembl	74_37	-1	known	missense	c.829	p.A277T	0.996	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,smart_Integrin_bsu_N	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_Integrin_bsu_tail,pfam_Integrin_bsu_cyt_dom,pfam_EGF_extracell,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like_fold,smart_Integrin_bsu_N,prints_Integrin_bsu	-	no_errors	ITGB2	HGNC	ENSG00000160255				92	0	0	66	12	15.3846
PCNT	0	genome.wustl.edu	37	21	47832899	47832899	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	21	47832899	47832899	G	A	SNP	PCNT	ENST00000359568	human	ensembl	74_37	+1	known	missense	c.6143	p.G2048D	0.000	NULL	pfam_PACT_domain	-	no_errors	PCNT	HGNC	ENSG00000160299				69	0	0	53	12	18.4615
DGCR5	0	genome.wustl.edu	37	22	18979498	18979498	+	RNA	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	22	18979498	18979498	G	A	SNP	DGCR5	ENST00000438934	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.999	-	-	-	no_errors	DGCR5	HGNC	ENSG00000237517				37	0	0	33	4	10.8108
ARVCF	0	genome.wustl.edu	37	22	19967605	19967605	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	22	19967605	19967605	G	A	SNP	ARVCF	ENST00000263207	human	ensembl	74_37	-1	known	missense	c.1057	p.P353S	1.000	NULL	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	ARVCF	HGNC	ENSG00000099889				18	0	0	11	3	21.4286
DGCR8	0	genome.wustl.edu	37	22	20073609	20073609	+	Silent	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	22	20073609	20073609	A	G	SNP	DGCR8	ENST00000351989	human	ensembl	74_37	+1	known	silent	c.123	p.Q41	1.000	NULL	pfam_dsRNA-bd_dom,superfamily_WW_dom,smart_WW_dom,smart_dsRNA-bd_dom,pfscan_WW_dom,pfscan_dsRNA-bd_dom	-	no_errors	DGCR8	HGNC	ENSG00000128191				95	0	0	69	10	12.6582
MED15	0	genome.wustl.edu	37	22	20918760	20918760	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	22	20918760	20918760	G	T	SNP	MED15	ENST00000263205	human	ensembl	74_37	+1	known	missense	c.475	p.A159S	1.000	pfam_Mediator_Med15_met	pfam_Mediator_Med15_met	-	no_errors	MED15	HGNC	ENSG00000099917				78	0	0	48	10	17.2414
AIFM3	0	genome.wustl.edu	37	22	21329105	21329105	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	22	21329105	21329105	G	T	SNP	AIFM3	ENST00000399167	human	ensembl	74_37	+1	known	missense	c.720	p.K240N	1.000	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_Pyr_OxRdtase_NAD-bd_dom,pfam_Rieske_2Fe-2S,superfamily_Rieske_2Fe-2S,superfamily_FAD/NAD-linked_Rdtase_dimer,prints_FAD_pyr_nucl-diS_OxRdtase,prints_Pyridine_nuc-diS_OxRdtase_2	-	no_errors	AIFM3	HGNC	ENSG00000183773				67	0	0	66	11	14.2857
BMS1P20	0	genome.wustl.edu	37	22	22664115	22664115	+	RNA	SNP	A	A	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	22	22664115	22664115	A	T	SNP	BMS1P20	ENST00000426066	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.991	-	-	-	no_errors	BMS1P20	HGNC	ENSG00000236850				94	0	0	73	5	6.41026
ZNF280A	0	genome.wustl.edu	37	22	22869532	22869532	+	Silent	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	22	22869532	22869532	G	A	SNP	ZNF280A	ENST00000302097	human	ensembl	74_37	-1	known	silent	c.423	p.L141	0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF280A	HGNC	ENSG00000169548				99	0	0	89	24	21.2389
LRP5L	0	genome.wustl.edu	37	22	25756037	25756037	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	22	25756037	25756037	G	A	SNP	LRP5L	ENST00000402785	human	ensembl	74_37	-1	known	missense	c.23	p.T8M	1.000	pfscan_LDLR_classB_rpt	pfam_LDLR_classB_rpt,smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP5L	HGNC	ENSG00000100068				55	0	0	31	10	24.3902
MYO18B	0	genome.wustl.edu	37	22	26423135	26423135	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	22	26423135	26423135	C	A	SNP	MYO18B	ENST00000335473	human	ensembl	74_37	+1	known	missense	c.7195	p.L2399I	0.801	NULL	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,superfamily_tRNA-bd_arm,superfamily_Ribosomal_zn-bd,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO18B	HGNC	ENSG00000133454				114	0	0	81	18	18.1818
CRYBB1	0	genome.wustl.edu	37	22	27012154	27012154	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	22	27012154	27012154	C	T	SNP	CRYBB1	ENST00000215939	human	ensembl	74_37	-1	known	missense	c.130	p.V44M	0.001	NULL	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	CRYBB1	HGNC	ENSG00000100122				90	0	0	98	16	14.0351
CCDC157	0	genome.wustl.edu	37	22	30762081	30762081	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	22	30762081	30762081	G	A	SNP	CCDC157	ENST00000338306	human	ensembl	74_37	+1	known	missense	c.92	p.R31H	0.539	NULL	superfamily_Prefoldin,superfamily_t-SNARE	-	no_errors	CCDC157	HGNC	ENSG00000187860				98	0	0	82	18	18
OSBP2	0	genome.wustl.edu	37	22	31302253	31302253	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	22	31302253	31302253	C	T	SNP	OSBP2	ENST00000332585	human	ensembl	74_37	+1	known	missense	c.2678	p.A893V	1.000	pfam_Oxysterol-bd	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,superfamily_DNA-bd_dom_put,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBP2	HGNC	ENSG00000184792				124	0	0	114	18	13.6364
SMTN	0	genome.wustl.edu	37	22	31495154	31495154	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	22	31495154	31495154	C	T	SNP	SMTN	ENST00000347557	human	ensembl	74_37	+1	known	missense	c.2440	p.R814C	1.000	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_Smoothelin,pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	SMTN	HGNC	ENSG00000183963				42	0	0	31	3	8.82353
RFPL2	0	genome.wustl.edu	37	22	32587176	32587176	+	Silent	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	22	32587176	32587176	G	A	SNP	RFPL2	ENST00000400237	human	ensembl	74_37	-1	known	silent	c.720	p.R240	0.724	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_RDM_domain_RFPL,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,prints_Butyrophylin	-	no_errors	RFPL2	HGNC	ENSG00000128253				150	0	0	126	27	17.6471
HMOX1	0	genome.wustl.edu	37	22	35783002	35783002	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	22	35783002	35783002	C	T	SNP	HMOX1	ENST00000216117	human	ensembl	74_37	+1	known	silent	c.469	p.L157	1.000	pfam_Haem_Oase-like,superfamily_Haem_Oase-like_multi-hlx,pirsf_Haem_Oase	pfam_Haem_Oase-like,superfamily_Haem_Oase-like_multi-hlx,pirsf_Haem_Oase,prints_Haem_Oase	-	no_errors	HMOX1	HGNC	ENSG00000100292				89	0	0	78	6	7.14286
LGALS2	0	genome.wustl.edu	37	22	37966699	37966699	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	22	37966699	37966699	G	A	SNP	LGALS2	ENST00000215886	human	ensembl	74_37	-1	known	missense	c.133	p.H45Y	1.000	pfam_Galectin_CRD,superfamily_ConA-like_lec_gl_sf,smart_Galectin_CRD	pfam_Galectin_CRD,superfamily_ConA-like_lec_gl_sf,smart_Galectin_CRD	-	no_errors	LGALS2	HGNC	ENSG00000100079				157	1	0.632911	117	34	22.5166
PDXP	0	genome.wustl.edu	37	22	38055298	38055298	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	22	38055298	38055298	A	C	SNP	PDXP	ENST00000215904	human	ensembl	74_37	+1	known	missense	c.509	p.E170A	0.014	pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_PGP_euk,tigrfam_HAD-SF_hydro_IIA	pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_PGP_euk,tigrfam_HAD-SF_hydro_IIA	-	no_errors	PDXP	HGNC	ENSG00000241360				48	0	0	44	7	13.7255
TMEM184B	0	genome.wustl.edu	37	22	38620838	38620838	+	Silent	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	22	38620838	38620838	G	A	SNP	TMEM184B	ENST00000361684	human	ensembl	74_37	-1	known	silent	c.936	p.H312	0.826	pfam_Ost-alpha	pfam_Ost-alpha	-	no_errors	TMEM184B	HGNC	ENSG00000198792				88	0	0	72	9	11.1111
SGSM3	0	genome.wustl.edu	37	22	40801671	40801671	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	22	40801671	40801671	C	T	SNP	SGSM3	ENST00000248929	human	ensembl	74_37	+1	known	silent	c.637	p.L213	1.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,pfam_Run,pfam_SH3_domain,pfam_SH3_2,superfamily_Rab-GTPase-TBC_dom,superfamily_SH3_domain,smart_Rab-GTPase-TBC_dom,smart_SH3_domain,smart_Run,pfscan_Run,pfscan_SH3_domain,pfscan_Rab-GTPase-TBC_dom	-	no_errors	SGSM3	HGNC	ENSG00000100359				316	0	0	265	57	17.7019
EP300	0	genome.wustl.edu	37	22	41533773	41533773	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	22	41533773	41533773	G	A	SNP	EP300	ENST00000263253	human	ensembl	74_37	+1	known	missense	c.1739	p.R580Q	1.000	pfam_KIX_dom,superfamily_KIX_dom,pfscan_KIX_dom	pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX_dom,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX_dom,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX_dom,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	EP300	HGNC	ENSG00000100393				81	0	0	65	12	15.5844
EP300	0	genome.wustl.edu	37	22	41545050	41545050	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	22	41545050	41545050	C	T	SNP	EP300	ENST00000263253	human	ensembl	74_37	+1	known	silent	c.2250	p.G750	1.000	NULL	pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX_dom,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX_dom,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX_dom,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	EP300	HGNC	ENSG00000100393				104	0	0	62	25	28.7356
SCUBE1	0	genome.wustl.edu	37	22	43735227	43735227	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	22	43735227	43735227	C	T	SNP	SCUBE1	ENST00000360835	human	ensembl	74_37	-1	known	missense	c.103	p.D35N	1.000	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd_dom,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_EG-like_dom,pfam_CUB_dom,superfamily_CUB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_CUB_dom,pfscan_CUB_dom,pfscan_EG-like_dom	-	no_errors	SCUBE1	HGNC	ENSG00000159307				90	0	0	55	14	20.2899
EFCAB6	0	genome.wustl.edu	37	22	43926830	43926830	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	22	43926830	43926830	C	T	SNP	EFCAB6	ENST00000262726	human	ensembl	74_37	-1	known	silent	c.4248	p.A1416	0.000	NULL	pfam_EF_hand_Ca-bd_contain_6,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	EFCAB6	HGNC	ENSG00000186976				80	0	0	70	5	6.66667
SAMM50	0	genome.wustl.edu	37	22	44392209	44392209	+	RNA	SNP	T	T	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	22	44392209	44392209	T	C	SNP	SAMM50	ENST00000493621	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SAMM50	HGNC	ENSG00000100347				660	0	0	529	132	19.9697
IMPG2	0	genome.wustl.edu	37	3	100986374	100986374	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	3	100986374	100986374	A	G	SNP	IMPG2	ENST00000193391	human	ensembl	74_37	-1	known	missense	c.889	p.S297P	0.917	pfam_SEA_dom,smart_SEA_dom	pfam_SEA_dom,smart_SEA_dom,pfscan_EG-like_dom,pfscan_SEA_dom	-	no_errors	IMPG2	HGNC	ENSG00000081148				65	0	0	73	11	13.0952
DPPA2	0	genome.wustl.edu	37	3	109027089	109027089	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	3	109027089	109027089	G	A	SNP	DPPA2	ENST00000478945	human	ensembl	74_37	-1	known	missense	c.448	p.R150C	0.000	NULL	pfscan_SAP_dom	-	no_errors	DPPA2	HGNC	ENSG00000163530				86	0	0	70	14	16.6667
DRD3	0	genome.wustl.edu	37	3	113850211	113850211	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	3	113850211	113850211	G	A	SNP	DRD3	ENST00000383673	human	ensembl	74_37	-1	known	missense	c.760	p.R254C	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Dopamine_D3_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Dopamine_D3_rcpt,prints_GPCR_Rhodpsn,prints_Dopamine_rcpt	-	no_errors	DRD3	HGNC	ENSG00000151577				141	0	0	109	20	15.5039
NR1I2	0	genome.wustl.edu	37	3	119534274	119534274	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	3	119534274	119534274	C	A	SNP	NR1I2	ENST00000337940	human	ensembl	74_37	+1	known	missense	c.1159	p.L387I	1.000	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Str_hrmn_rcpt	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt	-	no_errors	NR1I2	HGNC	ENSG00000144852				120	0	0	90	19	17.4312
PARP9	0	genome.wustl.edu	37	3	122274498	122274498	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	3	122274498	122274498	A	G	SNP	PARP9	ENST00000360356	human	ensembl	74_37	-1	known	missense	c.625	p.C209R	0.003	pfam_Macro_dom,smart_Macro_dom,pfscan_Macro_dom	pfam_Macro_dom,smart_Macro_dom,pfscan_Macro_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP9	HGNC	ENSG00000138496				36	0	0	49	7	12.5
PPARG	0	genome.wustl.edu	37	3	12458573	12458573	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	3	12458573	12458573	A	G	SNP	PPARG	ENST00000287820	human	ensembl	74_37	+1	known	missense	c.1190	p.E397G	1.000	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_1Cnucl_rcpt	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_PPARgamma_N,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_1Cnucl_rcpt,prints_1Cnucl_rcpt_G,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	PPARG	HGNC	ENSG00000132170				60	0	0	42	13	23.6364
MCM2	0	genome.wustl.edu	37	3	127335932	127335932	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	3	127335932	127335932	G	T	SNP	MCM2	ENST00000265056	human	ensembl	74_37	+1	known	nonsense	c.1744	p.G582*	1.000	pfam_MCM_DNA-dep_ATPase,pfam_Mg_chelatse_chII,pfam_ATPase_AAA-3,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_MCM_DNA-dep_ATPase,pfscan_MCM_DNA-dep_ATPase,prints_MCM_DNA-dep_ATPase	pfam_MCM_DNA-dep_ATPase,pfam_MCM2,pfam_Mg_chelatse_chII,pfam_ATPase_AAA-3,pfam_ATPase_dyneun-rel_AAA,superfamily_NA-bd_OB-fold,superfamily_P-loop_NTPase,smart_MCM_DNA-dep_ATPase,pfscan_MCM_DNA-dep_ATPase,prints_MCM2,prints_MCM_DNA-dep_ATPase	-	no_errors	MCM2	HGNC	ENSG00000073111				182	0	0	138	36	20.6897
ALG1L2	0	genome.wustl.edu	37	3	129810159	129810159	+	RNA	SNP	C	C	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	3	129810159	129810159	C	A	SNP	ALG1L2	ENST00000503500	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.938	-	-	-	no_errors	ALG1L2	HGNC	ENSG00000251287				59	0	0	39	9	18.75
COL6A6	0	genome.wustl.edu	37	3	130287372	130287372	+	Silent	SNP	T	T	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	3	130287372	130287372	T	C	SNP	COL6A6	ENST00000358511	human	ensembl	74_37	+1	known	silent	c.2325	p.V775	0.939	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A6	HGNC	ENSG00000206384				109	0	0	97	26	21.1382
ACAD11	0	genome.wustl.edu	37	3	132322160	132322160	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	3	132322160	132322160	C	A	SNP	ACAD11	ENST00000264990	human	ensembl	74_37	-1	known	missense	c.1534	p.A512S	1.000	pfam_Acyl-CoA_Oxase/DH_cen-dom,superfamily_AcylCoA_DH/oxidase_NM_dom	pfam_Aminoglycoside_PTrfase,pfam_AcylCo_DH/oxidase_C,pfam_Acyl-CoA_Oxase/DH_cen-dom,pfam_Acyl-CoA_DH_2_C,pfam_AcylCoA_DH/ox_N,superfamily_AcylCoA_DH/oxidase_NM_dom,superfamily_AcylCo_DH/oxidase_C,superfamily_Kinase-like_dom	-	no_errors	ACAD11	HGNC	ENSG00000240303				101	0	0	81	14	14.7368
DZIP1L	0	genome.wustl.edu	37	3	137790602	137790602	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	3	137790602	137790602	G	A	SNP	DZIP1L	ENST00000327532	human	ensembl	74_37	-1	known	missense	c.1498	p.R500W	0.001	NULL	pfscan_Znf_C2H2	-	no_errors	DZIP1L	HGNC	ENSG00000158163				78	0	0	69	15	17.8571
ZIC4	0	genome.wustl.edu	37	3	147114073	147114073	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	3	147114073	147114073	C	A	SNP	ZIC4	ENST00000525172	human	ensembl	74_37	-1	known	missense	c.404	p.R135L	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZIC4	HGNC	ENSG00000174963				32	0	0	22	6	21.4286
NR2C2	0	genome.wustl.edu	37	3	15045441	15045441	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	3	15045441	15045441	G	A	SNP	NR2C2	ENST00000323373	human	ensembl	74_37	+1	known	missense	c.20	p.R7H	1.000	NULL	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt	-	no_errors	NR2C2	HGNC	ENSG00000177463				60	0	0	44	8	15.3846
P2RY14	0	genome.wustl.edu	37	3	150931269	150931269	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	3	150931269	150931269	A	G	SNP	P2RY14	ENST00000309170	human	ensembl	74_37	-1	known	missense	c.836	p.F279S	1.000	pfam_GPCR_Rhodpsn,prints_P2Y14_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,prints_P2Y14_rcpt,prints_GPCR_Rhodpsn,prints_P2Y13_rcpt,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	P2RY14	HGNC	ENSG00000174944				118	0	0	86	22	20.3704
MBNL1	0	genome.wustl.edu	37	3	152165478	152165478	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	3	152165478	152165478	G	A	SNP	MBNL1	ENST00000282486	human	ensembl	74_37	+1	known	missense	c.931	p.A311T	1.000	NULL	smart_Znf_CCCH	-	no_errors	MBNL1	HGNC	ENSG00000152601				112	0	0	119	19	13.7681
DHX36	0	genome.wustl.edu	37	3	154006670	154006670	+	Silent	SNP	T	T	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	3	154006670	154006670	T	C	SNP	DHX36	ENST00000496811	human	ensembl	74_37	-1	known	silent	c.2016	p.R672	0.988	pfam_Helicase-assoc_dom,superfamily_P-loop_NTPase,smart_Helicase-assoc_dom	pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX36	HGNC	ENSG00000174953				37	0	0	22	3	12
ANKRD28	0	genome.wustl.edu	37	3	15755084	15755084	+	Silent	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	3	15755084	15755084	G	A	SNP	ANKRD28	ENST00000383777	human	ensembl	74_37	-1	known	silent	c.1149	p.G383	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD28	HGNC	ENSG00000206560				229	0	0	164	27	14.1361
BCHE	0	genome.wustl.edu	37	3	165548072	165548072	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	3	165548072	165548072	C	T	SNP	BCHE	ENST00000264381	human	ensembl	74_37	-1	known	silent	c.750	p.L250	0.970	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AChE_tetra,pfam_AB_hydrolase_3,prints_Cholinesterase	-	no_errors	BCHE	HGNC	ENSG00000114200				128	0	0	134	13	8.84354
PIK3CA	0	genome.wustl.edu	37	3	178928348	178928348	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	3	178928348	178928348	G	T	SNP	PIK3CA	ENST00000263967	human	ensembl	74_37	+1	known	nonsense	c.1534	p.G512*	1.000	superfamily_ARM-type_fold	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879				80	0	0	62	4	6.06061
GNB4	0	genome.wustl.edu	37	3	179131207	179131207	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	3	179131207	179131207	G	C	SNP	GNB4	ENST00000232564	human	ensembl	74_37	-1	known	missense	c.692	p.A231G	1.000	pirsf_Guanine_nucleotide-bd_bsu,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pirsf_Guanine_nucleotide-bd_bsu,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_Gprotein_B,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	GNB4	HGNC	ENSG00000114450				58	0	0	37	8	17.7778
YEATS2	0	genome.wustl.edu	37	3	183521825	183521825	+	Silent	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	3	183521825	183521825	G	A	SNP	YEATS2	ENST00000305135	human	ensembl	74_37	+1	known	silent	c.3633	p.K1211	1.000	NULL	pfam_YEATS,pfscan_YEATS	-	no_errors	YEATS2	HGNC	ENSG00000163872				101	0	0	87	20	18.6916
HTR3C	0	genome.wustl.edu	37	3	183778041	183778041	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	3	183778041	183778041	G	T	SNP	HTR3C	ENST00000318351	human	ensembl	74_37	+1	known	missense	c.1245	p.W415C	0.989	superfamily_Neurotrans-gated_channel_TM	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_Neur_channel	-	no_errors	HTR3C	HGNC	ENSG00000178084				177	0	0	158	13	7.60234
CLCN2	0	genome.wustl.edu	37	3	184064539	184064539	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	3	184064539	184064539	C	T	SNP	CLCN2	ENST00000265593	human	ensembl	74_37	-1	known	missense	c.2552	p.R851Q	1.000	NULL	pfam_Cl-channel_volt-gated,pfam_CBS_dom,superfamily_Cl-channel_core,prints_Cl-channel_volt-gated,prints_Cl-channel-2	-	no_errors	CLCN2	HGNC	ENSG00000114859				67	0	0	66	10	13.1579
EPHB3	0	genome.wustl.edu	37	3	184290449	184290449	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	3	184290449	184290449	G	A	SNP	EPHB3	ENST00000330394	human	ensembl	74_37	+1	known	missense	c.341	p.R114H	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ephrin_rcpt_lig-bd_dom,superfamily_Galactose-bd-like,smart_Ephrin_rcpt_lig-bd_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHB3	HGNC	ENSG00000182580				48	0	0	34	4	10.5263
LEPREL1	0	genome.wustl.edu	37	3	189689785	189689785	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	3	189689785	189689785	T	C	SNP	LEPREL1	ENST00000319332	human	ensembl	74_37	-1	known	missense	c.1711	p.R571G	0.916	smart_Pro_4_hyd_alph	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	LEPREL1	HGNC	ENSG00000090530				44	0	0	29	4	12.1212
MUC4	0	genome.wustl.edu	37	3	195505772	195505772	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	3	195505772	195505772	C	G	SNP	MUC4	ENST00000463781	human	ensembl	74_37	-1	known	missense	c.12679	p.V4227L	0.879	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EG-like_dom,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113				29	0	0	11	3	21.4286
MUC4	0	genome.wustl.edu	37	3	195506005	195506005	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	3	195506005	195506005	A	C	SNP	MUC4	ENST00000463781	human	ensembl	74_37	-1	known	missense	c.12446	p.I4149S	0.000	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EG-like_dom,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113				8	0	0	2	2	50
MUC4	0	genome.wustl.edu	37	3	195515860	195515860	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	3	195515860	195515860	G	A	SNP	MUC4	ENST00000463781	human	ensembl	74_37	-1	known	missense	c.2591	p.A864V	0.000	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EG-like_dom,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113				56	0	0	37	7	15.9091
PCYT1A	0	genome.wustl.edu	37	3	195974240	195974240	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	3	195974240	195974240	G	A	SNP	PCYT1A	ENST00000292823	human	ensembl	74_37	-1	known	missense	c.484	p.R162W	1.000	pfam_Cyt_trans-like	pfam_Cyt_trans-like,superfamily_NA-bd_OB-fold,tigrfam_Cyt_trans-like	-	no_errors	PCYT1A	HGNC	ENSG00000161217				182	0	0	159	38	19.2893
LRCH3	0	genome.wustl.edu	37	3	197593070	197593070	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	3	197593070	197593070	T	G	SNP	LRCH3	ENST00000438796	human	ensembl	74_37	+1	known	missense	c.1853	p.V618G	0.219	NULL	pfam_Leu-rich_rpt,pfam_CH-domain,superfamily_CH-domain,smart_Leu-rich_rpt_typical-subtyp,smart_CH-domain,pfscan_CH-domain	-	no_errors	LRCH3	HGNC	ENSG00000186001				106	0	0	77	16	17.2043
VILL	0	genome.wustl.edu	37	3	38035838	38035838	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	3	38035838	38035838	C	T	SNP	VILL	ENST00000283713	human	ensembl	74_37	+1	known	silent	c.222	p.G74	0.008	pfam_Gelsolin_dom,smart_Villin/Gelsolin	pfam_Gelsolin_dom,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Villin/Gelsolin,smart_Villin_headpiece,pfscan_Villin_headpiece,prints_Villin/Gelsolin	-	no_errors	VILL	HGNC	ENSG00000136059				44	0	0	33	3	8.33333
PLCD1	0	genome.wustl.edu	37	3	38052911	38052911	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	3	38052911	38052911	G	T	SNP	PLCD1	ENST00000463876	human	ensembl	74_37	-1	known	missense	c.647	p.S216Y	1.000	smart_EF_hand_dom	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_Pleckstrin_homology,smart_EF_hand_dom,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,pfscan_EF_hand_dom,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCD1	HGNC	ENSG00000187091				59	0	0	39	16	29.0909
XYLB	0	genome.wustl.edu	37	3	38404473	38404473	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	3	38404473	38404473	T	A	SNP	XYLB	ENST00000207870	human	ensembl	74_37	+1	known	missense	c.256	p.F86I	0.998	pfam_Carb_kinase_FGGY_N	pfam_Carb_kinase_FGGY_C,pfam_Carb_kinase_FGGY_N	-	no_errors	XYLB	HGNC	ENSG00000093217				120	0	0	94	22	18.9655
TTC21A	0	genome.wustl.edu	37	3	39174572	39174572	+	Silent	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	3	39174572	39174572	G	A	SNP	TTC21A	ENST00000301819	human	ensembl	74_37	+1	known	silent	c.2616	p.K872	1.000	pfscan_TPR-contain_dom	pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC21A	HGNC	ENSG00000168026				73	0	0	59	13	18.0556
TRAK1	0	genome.wustl.edu	37	3	42264629	42264629	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	3	42264629	42264629	C	T	SNP	TRAK1	ENST00000396175	human	ensembl	74_37	+1	known	silent	c.2088	p.Y696	0.596	pfam_Traffickng_kinesin-bd_prot_dom	pfam_HAP1_N,pfam_Traffickng_kinesin-bd_prot_dom	-	no_errors	TRAK1	HGNC	ENSG00000182606				49	0	0	32	9	21.9512
ZBTB47	0	genome.wustl.edu	37	3	42701286	42701286	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	3	42701286	42701286	T	A	SNP	ZBTB47	ENST00000232974	human	ensembl	74_37	+1	known	missense	c.1439	p.L480Q	1.000	smart_Znf_C2H2-like	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB47	HGNC	ENSG00000114853				39	0	0	23	5	17.8571
CCDC13	0	genome.wustl.edu	37	3	42777197	42777197	+	Splice_Site	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	3	42777197	42777197	A	G	SNP	CCDC13	ENST00000310232	human	ensembl	74_37	-1	known	splice_site	c.1371+2	e9+2	1.000	-	-	-	no_errors	CCDC13	HGNC	ENSG00000244607				160	0	0	131	32	19.6319
ZKSCAN7	0	genome.wustl.edu	37	3	44598765	44598765	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	3	44598765	44598765	C	T	SNP	ZKSCAN7	ENST00000273320	human	ensembl	74_37	+1	known	missense	c.226	p.R76W	0.994	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,pfscan_Tscrpt_reg_SCAN	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZKSCAN7	HGNC	ENSG00000196345				89	0	0	50	16	24.2424
KIF15	0	genome.wustl.edu	37	3	44816853	44816853	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	3	44816853	44816853	C	T	SNP	KIF15	ENST00000438321	human	ensembl	74_37	+1	known	nonsense	c.127	p.R43*	0.191	NULL	NULL	-	no_errors	KIF15	HGNC	ENSG00000163808				88	0	0	60	18	23.0769
FYCO1	0	genome.wustl.edu	37	3	46008021	46008021	+	Silent	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	3	46008021	46008021	G	A	SNP	FYCO1	ENST00000535325	human	ensembl	74_37	-1	known	silent	c.2805	p.D935	0.000	NULL	pfam_Znf_FYVE,pfam_Run,superfamily_GOLD,superfamily_Znf_FYVE_PHD,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Znf_FYVE,pfscan_GOLD,pfscan_Run,pfscan_Znf_FYVE-rel	-	no_errors	FYCO1	HGNC	ENSG00000163820				88	0	0	56	16	22.2222
ITPR1	0	genome.wustl.edu	37	3	4709083	4709083	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	3	4709083	4709083	G	T	SNP	ITPR1	ENST00000302640	human	ensembl	74_37	+1	known	missense	c.1691	p.G564V	1.000	pfam_Ca-rel_channel	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR1	HGNC	ENSG00000150995				26	0	0	17	4	19.0476
PTPN23	0	genome.wustl.edu	37	3	47453286	47453286	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	3	47453286	47453286	G	A	SNP	PTPN23	ENST00000265562	human	ensembl	74_37	+1	known	missense	c.3902	p.R1301H	0.995	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_BRO1_dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_BRO1_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN23	HGNC	ENSG00000076201				125	0	0	104	8	7.14286
USP4	0	genome.wustl.edu	37	3	49321537	49321537	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	3	49321537	49321537	G	A	SNP	USP4	ENST00000265560	human	ensembl	74_37	-1	known	missense	c.2423	p.A808V	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfam_Pept_C19_DUSP,smart_Pept_C19_DUSP,pfscan_Peptidase_C19/C67	-	no_errors	USP4	HGNC	ENSG00000114316				136	0	0	92	18	16.3636
BSN	0	genome.wustl.edu	37	3	49689135	49689135	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	3	49689135	49689135	C	T	SNP	BSN	ENST00000296452	human	ensembl	74_37	+1	known	missense	c.2146	p.P716S	1.000	NULL	pfam_Znf_piccolo,superfamily_Znf_FYVE_PHD	-	no_errors	BSN	HGNC	ENSG00000164061				105	0	0	73	20	21.5054
UBA7	0	genome.wustl.edu	37	3	49850959	49850959	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	3	49850959	49850959	T	C	SNP	UBA7	ENST00000333486	human	ensembl	74_37	-1	known	missense	c.178	p.T60A	1.000	pfam_ThiF_NAD_FAD-bd,superfamily_Molybdenum_cofac_synth_MoeB,prints_UBQ/SUMO-activ_enz_E1-like,tigrfam_UBQ-activ_enz_E1	pfam_ThiF_NAD_FAD-bd,pfam_UBact_repeat,pfam_Ub-activating_enz_e1_C,pfam_Ubiquitin-activating_enzyme,superfamily_Molybdenum_cofac_synth_MoeB,prints_UBQ/SUMO-activ_enz_E1-like,tigrfam_UBQ-activ_enz_E1	-	no_errors	UBA7	HGNC	ENSG00000182179				120	0	0	82	17	17.1717
CAMKV	0	genome.wustl.edu	37	3	49898646	49898646	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	3	49898646	49898646	T	C	SNP	CAMKV	ENST00000477224	human	ensembl	74_37	-1	known	missense	c.529	p.I177V	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CAMKV	HGNC	ENSG00000164076				65	0	0	57	4	6.55738
RBM6	0	genome.wustl.edu	37	3	50005642	50005642	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	3	50005642	50005642	C	T	SNP	RBM6	ENST00000266022	human	ensembl	74_37	+1	known	nonsense	c.784	p.R262*	0.993	NULL	pfam_G_patch_dom,smart_RRM_dom,smart_G_patch_dom,pfscan_G_patch_dom,pfscan_RRM_dom	-	no_errors	RBM6	HGNC	ENSG00000004534				100	0	0	66	21	24.1379
DOCK3	0	genome.wustl.edu	37	3	51418626	51418626	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	3	51418626	51418626	G	A	SNP	DOCK3	ENST00000266037	human	ensembl	74_37	+1	known	missense	c.5729	p.R1910H	1.000	NULL	pfam_DOCK_C,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK3	HGNC	ENSG00000088538				71	0	0	57	11	16.1765
TEX264	0	genome.wustl.edu	37	3	51708379	51708379	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	3	51708379	51708379	C	T	SNP	TEX264	ENST00000341333	human	ensembl	74_37	+1	known	missense	c.59	p.T20M	0.999	NULL	superfamily_Reg_factor_effector_dom	-	no_errors	TEX264	HGNC	ENSG00000164081				123	0	0	103	20	16.2602
GRM2	0	genome.wustl.edu	37	3	51746637	51746637	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	3	51746637	51746637	G	A	SNP	GRM2	ENST00000395052	human	ensembl	74_37	+1	known	missense	c.599	p.R200H	1.000	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,prints_GPCR_3	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_2,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_3,prints_GPCR_3_GABA_rcpt_B	-	no_errors	GRM2	HGNC	ENSG00000164082				138	0	0	104	23	18.1102
GRM2	0	genome.wustl.edu	37	3	51746765	51746765	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	3	51746765	51746765	C	T	SNP	GRM2	ENST00000395052	human	ensembl	74_37	+1	known	missense	c.727	p.R243C	1.000	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_3	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_2,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_3,prints_GPCR_3_GABA_rcpt_B	-	no_errors	GRM2	HGNC	ENSG00000164082				57	0	0	33	10	23.2558
SLMAP	0	genome.wustl.edu	37	3	57913112	57913112	+	Silent	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	3	57913112	57913112	A	G	SNP	SLMAP	ENST00000428312	human	ensembl	74_37	+1	known	silent	c.2484	p.P828	0.998	NULL	pfam_FHA_dom,pfam_PFD_beta-like,superfamily_SMAD_FHA_domain,superfamily_Prefoldin,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	SLMAP	HGNC	ENSG00000163681				21	0	0	21	6	22.2222
FRMD4B	0	genome.wustl.edu	37	3	69246143	69246143	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	3	69246143	69246143	G	A	SNP	FRMD4B	ENST00000398540	human	ensembl	74_37	-1	known	nonsense	c.1000	p.Q334*	1.000	pfam_FERM_PH-like_C,pfscan_FERM_domain	pfam_DUF3338,pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam	-	no_errors	FRMD4B	HGNC	ENSG00000114541				53	0	0	39	10	20.4082
LMCD1	0	genome.wustl.edu	37	3	8590329	8590329	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	3	8590329	8590329	C	T	SNP	LMCD1	ENST00000157600	human	ensembl	74_37	+1	known	missense	c.463	p.R155C	0.966	pfam_PET_domain	pfam_PET_domain,pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	LMCD1	HGNC	ENSG00000071282				179	0	0	126	8	5.97015
MTHFD2P1	0	genome.wustl.edu	37	3	95373869	95373869	+	RNA	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	3	95373869	95373869	A	G	SNP	MTHFD2P1	ENST00000494840	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.997	-	-	-	no_errors	MTHFD2P1	HGNC	ENSG00000244681				17	0	0	13	4	23.5294
BRPF1	0	genome.wustl.edu	37	3	9776020	9776020	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	3	9776020	9776020	C	T	SNP	BRPF1	ENST00000383829	human	ensembl	74_37	+1	known	missense	c.196	p.R66C	1.000	NULL	pfam_Enhancer_polycomb-like_N,pfam_Bromodomain,pfam_PWWP_dom,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Bromodomain,smart_PWWP_dom,pfscan_PWWP_dom,pfscan_Znf_PHD-finger,pfscan_Znf_C2H2,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRPF1	HGNC	ENSG00000156983				200	0	0	136	28	17.0732
BRPF1	0	genome.wustl.edu	37	3	9776143	9776143	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	3	9776143	9776143	G	A	SNP	BRPF1	ENST00000383829	human	ensembl	74_37	+1	known	missense	c.319	p.V107I	0.999	pfam_Enhancer_polycomb-like_N	pfam_Enhancer_polycomb-like_N,pfam_Bromodomain,pfam_PWWP_dom,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Bromodomain,smart_PWWP_dom,pfscan_PWWP_dom,pfscan_Znf_PHD-finger,pfscan_Znf_C2H2,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRPF1	HGNC	ENSG00000156983				126	1	0.787402	95	17	15.1786
SLC9B1	0	genome.wustl.edu	37	4	103866441	103866441	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	4	103866441	103866441	C	T	SNP	SLC9B1	ENST00000296422	human	ensembl	74_37	-1	known	missense	c.562	p.A188T	0.047	pfam_Cation/H_exchanger	pfam_Cation/H_exchanger	-	no_errors	SLC9B1	HGNC	ENSG00000164037				170	0	0	135	19	12.3377
CXXC4	0	genome.wustl.edu	37	4	105412467	105412467	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	4	105412467	105412467	C	T	SNP	CXXC4	ENST00000394767	human	ensembl	74_37	-1	known	missense	c.493	p.G165S	1.000	NULL	pfam_Znf_CXXC,pfscan_Znf_CXXC	-	no_errors	CXXC4	HGNC	ENSG00000168772				104	0	0	57	16	21.9178
NPNT	0	genome.wustl.edu	37	4	106888380	106888380	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	4	106888380	106888380	C	T	SNP	NPNT	ENST00000379987	human	ensembl	74_37	+1	known	missense	c.1381	p.P461S	0.977	pfam_MAM_dom,superfamily_ConA-like_lec_gl_sf,smart_MAM_dom,pfscan_MAM_dom	pfam_MAM_dom,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_TIL_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_MAM_dom,pfscan_EG-like_dom,pfscan_MAM_dom	-	no_errors	NPNT	HGNC	ENSG00000168743				59	0	0	50	12	19.3548
ALPK1	0	genome.wustl.edu	37	4	113346862	113346862	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	4	113346862	113346862	C	T	SNP	ALPK1	ENST00000177648	human	ensembl	74_37	+1	known	nonsense	c.577	p.Q193*	1.000	NULL	pfam_MHCK_EF2_kinase,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	ALPK1	HGNC	ENSG00000073331				181	0	0	148	14	8.64198
LARP7	0	genome.wustl.edu	37	4	113567814	113567814	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	4	113567814	113567814	G	A	SNP	LARP7	ENST00000324052	human	ensembl	74_37	+1	known	missense	c.374	p.R125H	0.995	pfscan_RRM_dom,prints_Lupus_La	pfam_RRM_3,pfam_Lupus_La_RNA-bd,pfam_RRM_dom,smart_Lupus_La_RNA-bd,smart_RRM_dom,pfscan_Lupus_La_RNA-bd,pfscan_RRM_dom,prints_Lupus_La	-	no_errors	LARP7	HGNC	ENSG00000174720				20	0	0	23	3	11.5385
NDST3	0	genome.wustl.edu	37	4	119163293	119163293	+	Silent	SNP	A	A	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	4	119163293	119163293	A	C	SNP	NDST3	ENST00000296499	human	ensembl	74_37	+1	known	silent	c.2388	p.S796	0.858	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	pfam_Heparan_SO4_deacetylase,pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	NDST3	HGNC	ENSG00000164100				97	0	0	93	16	14.6789
CTBP1	0	genome.wustl.edu	37	4	1207290	1207290	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	4	1207290	1207290	G	A	SNP	CTBP1	ENST00000290921	human	ensembl	74_37	-1	known	missense	c.997	p.R333W	0.975	pfam_D-isomer_2_OHA_DH_cat_dom	pfam_D-isomer_2_OHA_DH_NAD-bd,pfam_D-isomer_2_OHA_DH_cat_dom,pfam_6PGDH_NADP-bd	-	no_errors	CTBP1	HGNC	ENSG00000159692				119	0	0	94	18	16.0714
TNIP3	0	genome.wustl.edu	37	4	122062982	122062982	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	4	122062982	122062982	G	A	SNP	TNIP3	ENST00000057513	human	ensembl	74_37	-1	known	missense	c.874	p.R292W	0.001	NULL	NULL	-	no_errors	TNIP3	HGNC	ENSG00000050730				65	0	0	52	13	20
KIAA1109	0	genome.wustl.edu	37	4	123107276	123107276	+	Silent	SNP	T	T	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	4	123107276	123107276	T	C	SNP	KIAA1109	ENST00000264501	human	ensembl	74_37	+1	known	silent	c.444	p.L148	1.000	NULL	pfam_Fragile_site-assoc_C	-	no_errors	KIAA1109	HGNC	ENSG00000138688				93	0	0	62	14	18.4211
KIAA1109	0	genome.wustl.edu	37	4	123275094	123275094	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	4	123275094	123275094	C	T	SNP	KIAA1109	ENST00000264501	human	ensembl	74_37	+1	known	missense	c.14227	p.R4743C	1.000	pfam_Fragile_site-assoc_C	pfam_Fragile_site-assoc_C	-	no_errors	KIAA1109	HGNC	ENSG00000138688				46	0	0	34	10	22.7273
SPATA5	0	genome.wustl.edu	37	4	123868515	123868515	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	4	123868515	123868515	G	A	SNP	SPATA5	ENST00000274008	human	ensembl	74_37	+1	known	missense	c.1586	p.R529Q	1.000	superfamily_P-loop_NTPase	pfam_ATPase_AAA_core,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_P-loop_NTPase,superfamily_Asp_de-COase-like_dom,smart_AAA+_ATPase	-	no_errors	SPATA5	HGNC	ENSG00000145375				102	0	0	82	22	21.1538
PCDH18	0	genome.wustl.edu	37	4	138451730	138451730	+	Silent	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	4	138451730	138451730	A	G	SNP	PCDH18	ENST00000344876	human	ensembl	74_37	-1	known	silent	c.1513	p.L505	0.004	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH18	HGNC	ENSG00000189184				173	0	0	119	24	16.7832
POU4F2	0	genome.wustl.edu	37	4	147561442	147561442	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	4	147561442	147561442	G	A	SNP	POU4F2	ENST00000281321	human	ensembl	74_37	+1	known	missense	c.712	p.A238T	1.000	NULL	pfam_POU_specific,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_POU_specific,prints_POU	-	no_errors	POU4F2	HGNC	ENSG00000151615				26	0	0	20	3	13.0435
CPEB2	0	genome.wustl.edu	37	4	15063798	15063798	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	4	15063798	15063798	C	T	SNP	CPEB2	ENST00000538197	human	ensembl	74_37	+1	known	nonsense	c.2791	p.R931*	1.000	smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CPEB2	HGNC	ENSG00000137449				160	0	0	154	27	14.9171
FBXW7	0	genome.wustl.edu	37	4	153249385	153249385	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	4	153249385	153249385	G	A	SNP	FBXW7	ENST00000281708	human	ensembl	74_37	-1	known	missense	c.1393	p.R465C	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_F-box_dom,superfamily_WD40_repeat_dom,superfamily_F-box_dom,smart_F-box_dom,smart_WD40_repeat,pfscan_F-box_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	FBXW7	HGNC	ENSG00000109670				176	0	0	164	24	12.766
TLR2	0	genome.wustl.edu	37	4	154625775	154625775	+	Silent	SNP	C	C	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	4	154625775	154625775	C	A	SNP	TLR2	ENST00000260010	human	ensembl	74_37	+1	known	silent	c.1716	p.G572	0.999	pirsf_Toll-like_receptor,smart_Cys-rich_flank_reg_C	pirsf_Toll-like_receptor,pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR2	HGNC	ENSG00000137462				153	0	0	102	27	20.9302
PLRG1	0	genome.wustl.edu	37	4	155458569	155458569	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	4	155458569	155458569	C	T	SNP	PLRG1	ENST00000393905	human	ensembl	74_37	-1	known	missense	c.1354	p.A452T	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	PLRG1	HGNC	ENSG00000171566				94	0	0	69	20	22.4719
PLRG1	0	genome.wustl.edu	37	4	155459192	155459192	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	4	155459192	155459192	T	A	SNP	PLRG1	ENST00000393905	human	ensembl	74_37	-1	known	missense	c.1220	p.Q407L	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	PLRG1	HGNC	ENSG00000171566				65	0	0	54	9	14.2857
GRIA2	0	genome.wustl.edu	37	4	158281228	158281228	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	4	158281228	158281228	A	G	SNP	GRIA2	ENST00000264426	human	ensembl	74_37	+1	known	missense	c.2224	p.M742V	1.000	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_Iontro_glu_rcpt,pfam_ANF_lig-bd_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIA2	HGNC	ENSG00000120251				104	0	0	70	12	14.6341
TLL1	0	genome.wustl.edu	37	4	166964495	166964495	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	4	166964495	166964495	G	A	SNP	TLL1	ENST00000061240	human	ensembl	74_37	+1	known	missense	c.1448	p.R483H	1.000	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pirsf_BMP_1/tolloid-like,pfscan_CUB_dom	pfam_CUB_dom,pfam_Peptidase_M12A,pfam_EGF-like_Ca-bd_dom,superfamily_CUB_dom,smart_Peptidase_Metallo,smart_CUB_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pirsf_BMP_1/tolloid-like,pfscan_CUB_dom,pfscan_EG-like_dom,prints_Peptidase_M12A	-	no_errors	TLL1	HGNC	ENSG00000038295				143	0	0	117	21	15.2174
CLCN3	0	genome.wustl.edu	37	4	170634343	170634343	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	4	170634343	170634343	C	A	SNP	CLCN3	ENST00000347613	human	ensembl	74_37	+1	known	missense	c.2263	p.L755I	1.000	pfam_CBS_dom	pfam_Cl-channel_volt-gated,pfam_CBS_dom,superfamily_Cl-channel_core,smart_CBS_dom,prints_Cl-channel_volt-gated,prints_Cl_channel-3	-	no_errors	CLCN3	HGNC	ENSG00000109572				98	0	0	69	19	21.5909
QDPR	0	genome.wustl.edu	37	4	17493907	17493907	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	4	17493907	17493907	C	T	SNP	QDPR	ENST00000281243	human	ensembl	74_37	-1	known	missense	c.493	p.A165T	1.000	pfam_DH_sc/Rdtase_SDR	pfam_DH_sc/Rdtase_SDR	-	no_errors	QDPR	HGNC	ENSG00000151552				61	0	0	41	12	22.6415
IRF2	0	genome.wustl.edu	37	4	185339800	185339800	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	4	185339800	185339800	C	T	SNP	IRF2	ENST00000393593	human	ensembl	74_37	-1	known	missense	c.250	p.A84T	1.000	pfam_Interferon_reg_fact_DNA-bd_dom,smart_Interferon_reg_fact_DNA-bd_dom,pirsf_Interferon_reg_fac-1/2,prints_Interferon_reg_fact_DNA-bd_dom	pfam_Interferon_reg_fact_DNA-bd_dom,smart_Interferon_reg_fact_DNA-bd_dom,pirsf_Interferon_reg_fac-1/2,prints_Interferon_reg_fact_DNA-bd_dom	-	no_errors	IRF2	HGNC	ENSG00000168310				58	0	0	54	3	5.26316
HELT	0	genome.wustl.edu	37	4	185941701	185941701	+	Silent	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	4	185941701	185941701	G	A	SNP	HELT	ENST00000338875	human	ensembl	74_37	+1	known	silent	c.759	p.P253	0.992	NULL	pfam_bHLH_dom,pfam_Orange,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_Orange,pfscan_bHLH_dom	-	no_errors	HELT	HGNC	ENSG00000187821				33	0	0	29	4	12.1212
HELT	0	genome.wustl.edu	37	4	185941780	185941780	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	4	185941780	185941780	C	T	SNP	HELT	ENST00000338875	human	ensembl	74_37	+1	known	missense	c.838	p.P280S	0.002	NULL	pfam_bHLH_dom,pfam_Orange,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_Orange,pfscan_bHLH_dom	-	no_errors	HELT	HGNC	ENSG00000187821				37	0	0	20	7	25.9259
ZFYVE28	0	genome.wustl.edu	37	4	2306637	2306637	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	4	2306637	2306637	C	A	SNP	ZFYVE28	ENST00000290974	human	ensembl	74_37	-1	known	missense	c.1430	p.S477I	0.002	NULL	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	-	no_errors	ZFYVE28	HGNC	ENSG00000159733				87	0	0	85	14	14.1414
KLB	0	genome.wustl.edu	37	4	39409172	39409172	+	Silent	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	4	39409172	39409172	A	G	SNP	KLB	ENST00000257408	human	ensembl	74_37	+1	known	silent	c.603	p.A201	0.000	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_1	-	no_errors	KLB	HGNC	ENSG00000134962				95	0	0	83	12	12.6316
RPL9	0	genome.wustl.edu	37	4	39458044	39458044	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	4	39458044	39458044	T	C	SNP	RPL9	ENST00000295955	human	ensembl	74_37	-1	known	missense	c.373	p.R125G	0.989	pfam_Ribosomal_L6_a/b-dom,superfamily_Ribosomal_L6_a/b-dom,pirsf_Ribosomal_L6	pfam_Ribosomal_L6_a/b-dom,superfamily_Ribosomal_L6_a/b-dom,pirsf_Ribosomal_L6	-	no_errors	RPL9	HGNC	ENSG00000163682				54	0	0	44	13	22.807
LOC401127	0	genome.wustl.edu	37	4	39482707	39482707	+	RNA	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	4	39482707	39482707	C	T	SNP	LOC401127	ENST00000513652	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.982	-	-	-	no_errors	RP11-472B18.1	Clone_based_vega_gene	ENSG00000224097				87	0	0	62	13	17.3333
ENSG00000221301	0	genome.wustl.edu	37	4	4086072	4086072	+	RNA	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	4	4086072	4086072	G	A	SNP	ENSG00000221301	ENST00000408374	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.032	-	-	-	no_errors	AC116562.1	Clone_based_ensembl_gene	ENSG00000221301				85	0	0	72	12	14.2857
KCTD8	0	genome.wustl.edu	37	4	44450159	44450159	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	4	44450159	44450159	C	A	SNP	KCTD8	ENST00000360029	human	ensembl	74_37	-1	known	nonsense	c.382	p.E128*	1.000	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	-	no_errors	KCTD8	HGNC	ENSG00000183783				43	0	0	22	6	21.4286
GUF1	0	genome.wustl.edu	37	4	44683221	44683221	+	Splice_Site	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	4	44683221	44683221	G	A	SNP	GUF1	ENST00000281543	human	ensembl	74_37	+1	known	splice_site	c.507+1	e4+1	1.000	-	-	-	no_errors	GUF1	HGNC	ENSG00000151806				246	0	0	199	25	11.1607
CORIN	0	genome.wustl.edu	37	4	47682178	47682178	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	4	47682178	47682178	T	G	SNP	CORIN	ENST00000273857	human	ensembl	74_37	-1	known	missense	c.1112	p.K371T	1.000	pirsf_Peptidase_S1A_corin,pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,prints_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pirsf_Peptidase_S1A_corin,pfam_Peptidase_S1,pfam_LDrepeatLR_classA_rpt,pfam_Frizzled_dom,superfamily_Trypsin-like_Pept_dom,superfamily_Frizzled_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_Srcr_rcpt-rel,smart_Frizzled_dom,smart_LDrepeatLR_classA_rpt,smart_Srcr_rcpt-rel,smart_Peptidase_S1,prints_LDrepeatLR_classA_rpt,prints_Peptidase_S1A,pfscan_Frizzled_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_Peptidase_S1	-	no_errors	CORIN	HGNC	ENSG00000145244				45	0	0	44	6	12
UBA6	0	genome.wustl.edu	37	4	68536191	68536191	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	4	68536191	68536191	C	T	SNP	UBA6	ENST00000322244	human	ensembl	74_37	-1	known	silent	c.666	p.T222	0.996	superfamily_Molybdenum_cofac_synth_MoeB,tigrfam_UBQ-activ_enz_E1	pfam_ThiF_NAD_FAD-bd,pfam_Ub-activating_enz_e1_C,pfam_UBact_repeat,pfam_Ubiquitin-activating_enzyme,superfamily_Molybdenum_cofac_synth_MoeB,prints_UBQ/SUMO-activ_enz_E1-like,tigrfam_UBQ-activ_enz_E1	-	no_errors	UBA6	HGNC	ENSG00000033178				45	0	0	42	7	14.2857
AFAP1	0	genome.wustl.edu	37	4	7802207	7802207	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	4	7802207	7802207	G	A	SNP	AFAP1	ENST00000420658	human	ensembl	74_37	-1	known	missense	c.1228	p.R410W	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	AFAP1	HGNC	ENSG00000196526				60	0	0	37	6	13.9535
FRAS1	0	genome.wustl.edu	37	4	79400796	79400796	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	4	79400796	79400796	G	T	SNP	FRAS1	ENST00000264895	human	ensembl	74_37	+1	known	missense	c.8367	p.K2789N	0.989	pfam_Calx_beta,smart_Calx_beta	pfam_Calx_beta,pfam_VWF_C,superfamily_Growth_fac_rcpt_N_dom,superfamily_Cadherin-like,smart_VWC_out,smart_VWF_C,smart_Furin_repeat,smart_EG-like_dom,smart_Calx_beta,pfscan_VWF_C	-	no_errors	FRAS1	HGNC	ENSG00000138759				66	0	0	54	6	10
FRAS1	0	genome.wustl.edu	37	4	79443907	79443907	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	4	79443907	79443907	G	A	SNP	FRAS1	ENST00000264895	human	ensembl	74_37	+1	known	missense	c.10753	p.A3585T	1.000	NULL	pfam_Calx_beta,pfam_VWF_C,superfamily_Growth_fac_rcpt_N_dom,superfamily_Cadherin-like,smart_VWC_out,smart_VWF_C,smart_Furin_repeat,smart_EG-like_dom,smart_Calx_beta,pfscan_VWF_C	-	no_errors	FRAS1	HGNC	ENSG00000138759				34	0	0	35	3	7.89474
ACOX3	0	genome.wustl.edu	37	4	8398700	8398700	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	4	8398700	8398700	C	A	SNP	ACOX3	ENST00000356406	human	ensembl	74_37	-1	known	missense	c.1020	p.E340D	0.000	pfam_AcylCo_DH/oxidase_C,superfamily_AcylCo_DH/oxidase_C,pirsf_Acyl-CoA_oxidase	pfam_Acyl-CoA_oxidase_C,pfam_Acyl-CoA_Oxase/DH_cen-dom,pfam_AcylCo_DH/oxidase_C,superfamily_AcylCo_DH/oxidase_C,superfamily_AcylCoA_DH/oxidase_NM_dom,pirsf_Acyl-CoA_oxidase	-	no_errors	ACOX3	HGNC	ENSG00000087008				117	0	0	91	19	17.2727
FAM175A	0	genome.wustl.edu	37	4	84391425	84391425	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	4	84391425	84391425	G	A	SNP	FAM175A	ENST00000321945	human	ensembl	74_37	-1	known	missense	c.407	p.T136I	1.000	prints_FAM175_BRISC_cplx_Abro1_su	prints_FAM175_BRCA1-A_cplx_Abraxas_su,prints_FAM175,prints_FAM175_BRISC_cplx_Abro1_su	-	no_errors	FAM175A	HGNC	ENSG00000163322				159	0	0	135	35	20.5882
PTPN13	0	genome.wustl.edu	37	4	87622727	87622727	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	4	87622727	87622727	G	A	SNP	PTPN13	ENST00000436978	human	ensembl	74_37	+1	known	missense	c.968	p.R323H	0.000	pirsf_Tyr_Pase_non-rcpt_typ-13	pirsf_Tyr_Pase_non-rcpt_typ-13,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_PDZ,pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_FERM_central,superfamily_PDZ,superfamily_PAZ_dom,smart_KIND,smart_Band_41_domain,smart_PDZ,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam,pfscan_FERM_domain,pfscan_PDZ,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN13	HGNC	ENSG00000163629				110	0	0	81	18	18.1818
GPRIN3	0	genome.wustl.edu	37	4	90170138	90170138	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	4	90170138	90170138	C	T	SNP	GPRIN3	ENST00000333209	human	ensembl	74_37	-1	known	missense	c.1124	p.S375N	0.000	NULL	NULL	-	no_errors	GPRIN3	HGNC	ENSG00000185477				100	0	0	99	7	6.60377
CTNND2	0	genome.wustl.edu	37	5	11364852	11364852	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	5	11364852	11364852	T	C	SNP	CTNND2	ENST00000304623	human	ensembl	74_37	-1	known	missense	c.1328	p.D443G	1.000	NULL	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	CTNND2	HGNC	ENSG00000169862				56	0	0	61	6	8.95522
SLC22A4	0	genome.wustl.edu	37	5	131671563	131671563	+	Silent	SNP	C	C	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	5	131671563	131671563	C	A	SNP	SLC22A4	ENST00000200652	human	ensembl	74_37	+1	known	silent	c.1314	p.T438	0.940	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	-	no_errors	SLC22A4	HGNC	ENSG00000197208				237	0	0	183	39	17.5676
IRF1	0	genome.wustl.edu	37	5	131819656	131819656	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	5	131819656	131819656	G	T	SNP	IRF1	ENST00000245414	human	ensembl	74_37	-1	known	missense	c.965	p.P322H	1.000	NULL	pfam_Interferon_reg_fact_DNA-bd_dom,smart_Interferon_reg_fact_DNA-bd_dom,pirsf_Interferon_reg_fac-1/2,prints_Interferon_reg_fact_DNA-bd_dom	-	no_errors	IRF1	HGNC	ENSG00000125347				63	0	0	61	8	11.5942
NEUROG1	0	genome.wustl.edu	37	5	134871159	134871159	+	Silent	SNP	G	G	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	5	134871159	134871159	G	C	SNP	NEUROG1	ENST00000314744	human	ensembl	74_37	-1	known	silent	c.222	p.R74	0.542	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	NEUROG1	HGNC	ENSG00000181965				18	0	0	12	5	29.4118
DNAH5	0	genome.wustl.edu	37	5	13817727	13817727	+	Silent	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	5	13817727	13817727	G	A	SNP	DNAH5	ENST00000265104	human	ensembl	74_37	-1	known	silent	c.6918	p.D2306	0.981	pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139				94	0	0	85	30	26.087
CXXC5	0	genome.wustl.edu	37	5	139062576	139062576	+	RNA	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	5	139062576	139062576	G	A	SNP	CXXC5	ENST00000515038	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	CXXC5	HGNC	ENSG00000171604				25	0	0	19	2	9.52381
DNAH5	0	genome.wustl.edu	37	5	13923470	13923470	+	Silent	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	5	13923470	13923470	G	A	SNP	DNAH5	ENST00000265104	human	ensembl	74_37	-1	known	silent	c.357	p.N119	0.993	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139				198	0	0	181	36	16.5899
PURA	0	genome.wustl.edu	37	5	139494404	139494404	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	5	139494404	139494404	A	C	SNP	PURA	ENST00000331327	human	ensembl	74_37	+1	known	missense	c.638	p.E213A	1.000	pfam_PUR_DNA_RNA-bd	pfam_PUR_DNA_RNA-bd,smart_PUR_DNA_RNA-bd	-	no_errors	PURA	HGNC	ENSG00000185129				48	0	0	41	17	29.3103
SLC35A4	0	genome.wustl.edu	37	5	139946971	139946971	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	5	139946971	139946971	T	C	SNP	SLC35A4	ENST00000323146	human	ensembl	74_37	+1	known	missense	c.217	p.W73R	0.871	pfam_DMT,pirsf_UDP/CMP-sugar_transptr	pfam_Nuc_sug_transpt,pfam_DMT,pirsf_UDP/CMP-sugar_transptr	-	no_errors	SLC35A4	HGNC	ENSG00000176087				90	0	0	59	14	19.1781
PCDHA4	0	genome.wustl.edu	37	5	140188299	140188299	+	Silent	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	5	140188299	140188299	G	A	SNP	PCDHA4	ENST00000530339	human	ensembl	74_37	+1	known	silent	c.1527	p.S509	0.733	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA4	HGNC	ENSG00000204967				179	0	0	139	31	18.2353
PCDHA6	0	genome.wustl.edu	37	5	140209639	140209639	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	5	140209639	140209639	G	A	SNP	PCDHA6	ENST00000529310	human	ensembl	74_37	+1	known	missense	c.1963	p.G655S	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA6	HGNC	ENSG00000081842				108	0	0	73	14	16.092
PCDHA13	0	genome.wustl.edu	37	5	140263299	140263299	+	Silent	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	5	140263299	140263299	G	A	SNP	PCDHA13	ENST00000289272	human	ensembl	74_37	+1	known	silent	c.1446	p.A482	0.822	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA13	HGNC	ENSG00000239389				169	0	0	129	19	12.8378
PCDHA13	0	genome.wustl.edu	37	5	140263504	140263504	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	5	140263504	140263504	C	T	SNP	PCDHA13	ENST00000289272	human	ensembl	74_37	+1	known	silent	c.1651	p.L551	0.997	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA13	HGNC	ENSG00000239389				205	0	0	173	26	13.0653
PCDHA13	0	genome.wustl.edu	37	5	140263536	140263536	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	5	140263536	140263536	C	T	SNP	PCDHA13	ENST00000289272	human	ensembl	74_37	+1	known	silent	c.1683	p.N561	0.802	superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA13	HGNC	ENSG00000239389				172	0	0	164	28	14.5833
PCDHAC2	0	genome.wustl.edu	37	5	140346519	140346519	+	Silent	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	5	140346519	140346519	G	A	SNP	PCDHAC2	ENST00000289269	human	ensembl	74_37	+1	known	silent	c.168	p.A56	0.042	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHAC2	HGNC	ENSG00000243232				26	0	0	11	5	31.25
PCDHB2	0	genome.wustl.edu	37	5	140475355	140475355	+	Silent	SNP	G	G	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	5	140475355	140475355	G	T	SNP	PCDHB2	ENST00000194155	human	ensembl	74_37	+1	known	silent	c.981	p.G327	0.664	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB2	HGNC	ENSG00000112852				89	0	0	76	11	12.6437
PCDHB12	0	genome.wustl.edu	37	5	140590109	140590109	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	5	140590109	140590109	G	A	SNP	PCDHB12	ENST00000239450	human	ensembl	74_37	+1	known	missense	c.1630	p.E544K	0.987	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB12	HGNC	ENSG00000120328				128	0	0	88	19	17.757
PCDHGB1	0	genome.wustl.edu	37	5	140731683	140731683	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	5	140731683	140731683	C	T	SNP	PCDHGB1	ENST00000523390	human	ensembl	74_37	+1	known	missense	c.1856	p.T619M	0.892	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB1	HGNC	ENSG00000254221				49	0	0	27	9	25
PCDHGA6	0	genome.wustl.edu	37	5	140754749	140754749	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	5	140754749	140754749	G	A	SNP	PCDHGA6	ENST00000517434	human	ensembl	74_37	+1	known	missense	c.1099	p.A367T	0.311	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA6	HGNC	ENSG00000253731				155	0	0	131	9	6.42857
DIAPH1	0	genome.wustl.edu	37	5	140903716	140903716	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	5	140903716	140903716	G	A	SNP	DIAPH1	ENST00000253811	human	ensembl	74_37	-1	known	missense	c.3658	p.R1220C	0.996	NULL	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,pfam_Formin_homology_1,pfam_Drf_DAD,superfamily_ARM-type_fold,superfamily_tRNA-bd_arm,smart_FH2_Formin	-	no_errors	DIAPH1	HGNC	ENSG00000131504				104	0	0	108	13	10.7438
GNPDA1	0	genome.wustl.edu	37	5	141385765	141385765	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	5	141385765	141385765	C	T	SNP	GNPDA1	ENST00000311337	human	ensembl	74_37	-1	known	missense	c.353	p.C118Y	1.000	pfam_Glc/Gal-6P_isomerase,tigrfam_Glucosamine6P_isomerase	pfam_Glc/Gal-6P_isomerase,tigrfam_Glucosamine6P_isomerase	-	no_errors	GNPDA1	HGNC	ENSG00000113552				144	0	0	111	32	22.3776
NDST1	0	genome.wustl.edu	37	5	149915269	149915269	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	5	149915269	149915269	G	A	SNP	NDST1	ENST00000261797	human	ensembl	74_37	+1	known	missense	c.1259	p.G420D	1.000	pfam_Heparan_SO4_deacetylase	pfam_Heparan_SO4_deacetylase,pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	NDST1	HGNC	ENSG00000070614				65	0	0	72	5	6.49351
TNIP1	0	genome.wustl.edu	37	5	150411891	150411891	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	5	150411891	150411891	G	T	SNP	TNIP1	ENST00000315050	human	ensembl	74_37	-1	known	missense	c.1833	p.S611R	0.934	NULL	superfamily_ARM-type_fold	-	no_errors	TNIP1	HGNC	ENSG00000145901				51	0	0	41	4	8.88889
G3BP1	0	genome.wustl.edu	37	5	151170610	151170610	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	5	151170610	151170610	T	C	SNP	G3BP1	ENST00000356245	human	ensembl	74_37	+1	known	missense	c.338	p.V113A	1.000	pfam_NTF2,pfscan_Nuclear_transport_factor_2_euk	pfam_NTF2,pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,pfscan_Nuclear_transport_factor_2_euk	-	no_errors	G3BP1	HGNC	ENSG00000145907				232	0	0	176	40	18.5185
HAVCR2	0	genome.wustl.edu	37	5	156514218	156514218	+	Silent	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	5	156514218	156514218	A	G	SNP	HAVCR2	ENST00000307851	human	ensembl	74_37	-1	known	silent	c.801	p.I267	0.872	NULL	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	HAVCR2	HGNC	ENSG00000135077				104	0	0	89	5	5.31915
FBXL7	0	genome.wustl.edu	37	5	15936751	15936751	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	5	15936751	15936751	T	C	SNP	FBXL7	ENST00000504595	human	ensembl	74_37	+1	known	missense	c.932	p.L311P	1.000	smart_Leu-rich_rpt_Cys-con_subtyp	pfam_Leu-rich_rpt,pfam_F-box_dom,superfamily_F-box_dom,smart_F-box_dom,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_F-box_dom	-	no_errors	FBXL7	HGNC	ENSG00000183580				42	0	0	36	7	16.2791
GABRA6	0	genome.wustl.edu	37	5	161116141	161116141	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	5	161116141	161116141	A	G	SNP	GABRA6	ENST00000274545	human	ensembl	74_37	+1	known	missense	c.412	p.I138V	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_GABAA_rcpt,prints_GABBAa6_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRA6	HGNC	ENSG00000145863				59	0	0	40	8	16.6667
MYO10	0	genome.wustl.edu	37	5	16672919	16672919	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	5	16672919	16672919	T	C	SNP	MYO10	ENST00000513610	human	ensembl	74_37	-1	known	missense	c.5188	p.I1730V	1.000	pfam_Ras-assoc,smart_Band_41_domain,pfscan_FERM_domain	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_Pleckstrin_homology,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,pfam_Ras-assoc,superfamily_P-loop_NTPase,superfamily_FERM_central,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Pleckstrin_homology,smart_MyTH4_dom,smart_Band_41_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_Pleckstrin_homology,prints_Myosin_head_motor_dom	-	no_errors	MYO10	HGNC	ENSG00000145555				40	0	0	21	5	19.2308
MYO10	0	genome.wustl.edu	37	5	16701393	16701393	+	Silent	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	5	16701393	16701393	G	A	SNP	MYO10	ENST00000513610	human	ensembl	74_37	-1	known	silent	c.3111	p.N1037	1.000	NULL	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_Pleckstrin_homology,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,pfam_Ras-assoc,superfamily_P-loop_NTPase,superfamily_FERM_central,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Pleckstrin_homology,smart_MyTH4_dom,smart_Band_41_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_Pleckstrin_homology,prints_Myosin_head_motor_dom	-	no_errors	MYO10	HGNC	ENSG00000145555				44	0	0	35	6	14.6341
TENM2	0	genome.wustl.edu	37	5	167589717	167589717	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	5	167589717	167589717	G	A	SNP	TENM2	ENST00000518659	human	ensembl	74_37	+1	known	missense	c.2524	p.V842I	1.000	superfamily_ConA-like_lec_gl_sf	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,superfamily_Quino_amine_DH_bsu,superfamily_ConA-like_lec_gl_sf,superfamily_Cytokine_IL1-like,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	TENM2	HGNC	ENSG00000145934				83	0	0	69	14	16.8675
SH3PXD2B	0	genome.wustl.edu	37	5	171777412	171777412	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	5	171777412	171777412	C	A	SNP	SH3PXD2B	ENST00000311601	human	ensembl	74_37	-1	known	missense	c.967	p.G323W	0.009	superfamily_SH3_domain	pfam_SH3_domain,pfam_SH3_2,pfam_Phox,pfam_SH3-like_bac-type,pfam_DUF1058,superfamily_Phox,superfamily_SH3_domain,smart_Phox,smart_SH3_domain,pfscan_Phox,pfscan_SH3_domain	-	no_errors	SH3PXD2B	HGNC	ENSG00000174705				91	0	0	65	6	8.4507
DRD1	0	genome.wustl.edu	37	5	174870015	174870015	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	5	174870015	174870015	G	T	SNP	DRD1	ENST00000393752	human	ensembl	74_37	-1	known	missense	c.88	p.L30M	1.000	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Dopamine_D1_rcpt,prints_GPCR_Rhodpsn,prints_Dopamine_rcpt,prints_ADR_fam	-	no_errors	DRD1	HGNC	ENSG00000184845				128	1	0.775194	82	20	19.6078
RNF44	0	genome.wustl.edu	37	5	175959004	175959004	+	Splice_Site	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	5	175959004	175959004	C	T	SNP	RNF44	ENST00000274811	human	ensembl	74_37	-1	known	splice_site	c.297+1	e2+1	1.000	-	-	-	no_errors	RNF44	HGNC	ENSG00000146083				81	0	0	81	5	5.81395
RGS14	0	genome.wustl.edu	37	5	176797920	176797920	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	5	176797920	176797920	C	T	SNP	RGS14	ENST00000408923	human	ensembl	74_37	+1	known	missense	c.1142	p.A381V	0.002	pfam_Raf-like_ras-bd,smart_Raf-like_ras-bd,pfscan_Raf-like_ras-bd	pfam_Raf-like_ras-bd,pfam_RGS_dom,pfam_GoLoco_motif,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,smart_Raf-like_ras-bd,smart_GoLoco_motif,pfscan_GoLoco_motif,pfscan_Raf-like_ras-bd,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS14	HGNC	ENSG00000169220				37	0	0	36	6	14.2857
CANX	0	genome.wustl.edu	37	5	179150668	179150668	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	5	179150668	179150668	T	C	SNP	CANX	ENST00000415618	human	ensembl	74_37	+1	known	missense	c.1511	p.V504A	0.823	NULL	pfam_Calret/calnex,superfamily_ConA-like_lec_gl_sf,superfamily_Calreticulin/calnexin_P_dom,prints_Calret/calnex	-	no_errors	CANX	HGNC	ENSG00000127022				177	0	0	141	22	13.4969
CDH10	0	genome.wustl.edu	37	5	24509929	24509929	+	Splice_Site	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	5	24509929	24509929	C	T	SNP	CDH10	ENST00000264463	human	ensembl	74_37	-1	known	splice_site	c.1003-1	e6-1	1.000	-	-	-	no_errors	CDH10	HGNC	ENSG00000040731				67	0	0	38	13	25.4902
PDZD2	0	genome.wustl.edu	37	5	31983446	31983446	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	5	31983446	31983446	T	C	SNP	PDZD2	ENST00000282493	human	ensembl	74_37	+1	known	missense	c.662	p.V221A	1.000	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PDZD2	HGNC	ENSG00000133401				115	0	0	88	23	20.7207
RXFP3	0	genome.wustl.edu	37	5	33937788	33937788	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	5	33937788	33937788	G	A	SNP	RXFP3	ENST00000330120	human	ensembl	74_37	+1	known	missense	c.943	p.G315R	0.004	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Formyl_pep_rcpt	-	no_errors	RXFP3	HGNC	ENSG00000182631				33	0	0	9	6	40
NIPBL	0	genome.wustl.edu	37	5	37045628	37045628	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	5	37045628	37045628	T	A	SNP	NIPBL	ENST00000282516	human	ensembl	74_37	+1	known	missense	c.6427	p.S2143T	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	NIPBL	HGNC	ENSG00000164190				245	1	0.406504	244	50	17.0068
MROH2B	0	genome.wustl.edu	37	5	41004956	41004956	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	5	41004956	41004956	T	C	SNP	MROH2B	ENST00000399564	human	ensembl	74_37	-1	known	missense	c.3931	p.S1311G	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	MROH2B	HGNC	ENSG00000171495				70	0	0	52	9	14.7541
MROH2B	0	genome.wustl.edu	37	5	41018858	41018858	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	5	41018858	41018858	C	A	SNP	MROH2B	ENST00000399564	human	ensembl	74_37	-1	known	nonsense	c.2608	p.G870*	0.480	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	MROH2B	HGNC	ENSG00000171495				97	0	0	80	22	21.5686
C6	0	genome.wustl.edu	37	5	41160334	41160334	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	5	41160334	41160334	G	A	SNP	C6	ENST00000263413	human	ensembl	74_37	-1	known	missense	c.1594	p.P532S	1.000	prints_MAC_perforin	pfam_MACPF,pfam_Sushi_SCR_CCP,pfam_Thrombospondin_1_rpt,pfam_LDrepeatLR_classA_rpt,pfam_Kazal_dom,superfamily_Sushi_SCR_CCP,superfamily_Thrombospondin_1_rpt,superfamily_LDrepeatLR_classA_rpt,smart_Thrombospondin_1_rpt,smart_LDrepeatLR_classA_rpt,smart_MACPF,smart_Sushi_SCR_CCP,smart_FacI_MAC,prints_MAC_perforin,pfscan_LDrepeatLR_classA_rpt,pfscan_Sushi_SCR_CCP,pfscan_Thrombospondin_1_rpt	-	no_errors	C6	HGNC	ENSG00000039537				179	0	0	122	21	14.6853
HCN1	0	genome.wustl.edu	37	5	45303873	45303873	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	5	45303873	45303873	A	C	SNP	HCN1	ENST00000303230	human	ensembl	74_37	-1	known	missense	c.1446	p.N482K	1.000	superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	pfam_Ion_trans_N,pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG	-	no_errors	HCN1	HGNC	ENSG00000164588				140	0	0	117	38	24.5161
ISL1	0	genome.wustl.edu	37	5	50685514	50685514	+	Silent	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	5	50685514	50685514	G	A	SNP	ISL1	ENST00000230658	human	ensembl	74_37	+1	known	silent	c.513	p.R171	0.998	NULL	pfam_Znf_LIM,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeobox_dom,pfscan_Znf_LIM,pfscan_Homeobox_dom	-	no_errors	ISL1	HGNC	ENSG00000016082				59	0	0	40	12	23.0769
CCNO	0	genome.wustl.edu	37	5	54527374	54527374	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	5	54527374	54527374	C	T	SNP	CCNO	ENST00000282572	human	ensembl	74_37	-1	known	missense	c.882	p.M294I	0.997	pfam_Cyclin_C-dom,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_A/B/D/E	pfam_Cyclin_N,pfam_Cyclin_C-dom,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_A/B/D/E	-	no_errors	CCNO	HGNC	ENSG00000152669				71	0	0	49	16	24.6154
MAP3K1	0	genome.wustl.edu	37	5	56168713	56168713	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	5	56168713	56168713	G	A	SNP	MAP3K1	ENST00000399503	human	ensembl	74_37	+1	novel	missense	c.1567	p.V523I	0.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015				79	0	0	83	12	12.6316
HTR1A	0	genome.wustl.edu	37	5	63256881	63256881	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	5	63256881	63256881	C	T	SNP	HTR1A	ENST00000323865	human	ensembl	74_37	-1	known	silent	c.666	p.A222	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_5HT1A_rcpt,prints_GPCR_Rhodpsn,prints_5HT_rcpt,prints_NPY_rcpt	-	no_errors	HTR1A	HGNC	ENSG00000178394				214	0	0	151	32	17.4863
PAPD7	0	genome.wustl.edu	37	5	6739961	6739961	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	5	6739961	6739961	C	A	SNP	PAPD7	ENST00000230859	human	ensembl	74_37	+1	known	missense	c.254	p.A85D	1.000	pfam_Nucleotidyltransferase	pfam_PAP_assoc,pfam_Nucleotidyltransferase	-	no_errors	PAPD7	HGNC	ENSG00000112941				61	0	0	48	13	21.3115
TMEM171	0	genome.wustl.edu	37	5	72419385	72419385	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	5	72419385	72419385	C	T	SNP	TMEM171	ENST00000454765	human	ensembl	74_37	+1	known	missense	c.185	p.A62V	0.000	NULL	NULL	-	no_errors	TMEM171	HGNC	ENSG00000157111				78	0	0	80	5	5.88235
XRCC4	0	genome.wustl.edu	37	5	82554470	82554470	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	5	82554470	82554470	G	T	SNP	XRCC4	ENST00000338635	human	ensembl	74_37	+1	known	missense	c.867	p.Q289H	0.992	pfam_DNA_repair_prot_XRCC4	pfam_DNA_repair_prot_XRCC4,superfamily_XRCC4_N	-	no_errors	XRCC4	HGNC	ENSG00000152422				63	0	0	49	11	18.3333
RGMB	0	genome.wustl.edu	37	5	98115291	98115291	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	5	98115291	98115291	C	T	SNP	RGMB	ENST00000308234	human	ensembl	74_37	+1	known	silent	c.267	p.C89	1.000	pfam_RGM_N	pfam_RGM_C,pfam_RGM_N	-	no_errors	RGMB	HGNC	ENSG00000174136				274	0	0	195	43	18.0672
ASCC3	0	genome.wustl.edu	37	6	101053556	101053556	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	6	101053556	101053556	G	A	SNP	ASCC3	ENST00000369162	human	ensembl	74_37	-1	known	missense	c.5065	p.R1689C	1.000	pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_C,pfscan_Helicase_C	pfam_Sec63-dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_AAA+_ATPase,smart_Helicase_C,smart_Sec63-dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ASCC3	HGNC	ENSG00000112249				49	0	0	43	8	15.6863
GRIK2	0	genome.wustl.edu	37	6	102266333	102266333	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	6	102266333	102266333	G	A	SNP	GRIK2	ENST00000421544	human	ensembl	74_37	+1	known	missense	c.1292	p.R431H	1.000	NULL	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK2	HGNC	ENSG00000164418				31	0	0	22	7	24.1379
BEND3	0	genome.wustl.edu	37	6	107390838	107390838	+	Silent	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	6	107390838	107390838	G	A	SNP	BEND3	ENST00000369042	human	ensembl	74_37	-1	known	silent	c.1557	p.G519	0.568	NULL	pfam_BEN_domain	-	no_errors	BEND3	HGNC	ENSG00000178409				53	0	0	32	8	20
GPR6	0	genome.wustl.edu	37	6	110300547	110300547	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	6	110300547	110300547	C	T	SNP	GPR6	ENST00000414000	human	ensembl	74_37	+1	known	missense	c.277	p.L93F	1.000	prints_GPR_3/6/12_orphan	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPR6,prints_GPR_3/6/12_orphan,prints_GPCR_Rhodpsn	-	no_errors	GPR6	HGNC	ENSG00000146360				180	0	0	139	32	18.7135
KPNA5	0	genome.wustl.edu	37	6	117010486	117010486	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	6	117010486	117010486	C	A	SNP	KPNA5	ENST00000356348	human	ensembl	74_37	+1	known	missense	c.8	p.A3D	1.000	pfscan_Importin-a_IBB	pfam_Armadillo,pfam_Importin-a_IBB,pfam_HEAT,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo,pfscan_Importin-a_IBB	-	no_errors	KPNA5	HGNC	ENSG00000196911				194	0	0	163	33	16.8367
GPRC6A	0	genome.wustl.edu	37	6	117130556	117130556	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	6	117130556	117130556	A	C	SNP	GPRC6A	ENST00000310357	human	ensembl	74_37	-1	known	missense	c.419	p.V140G	0.999	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_GPCR_3_C,pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_vmron_rcpt_2	-	no_errors	GPRC6A	HGNC	ENSG00000173612				100	0	0	69	15	17.8571
RFX6	0	genome.wustl.edu	37	6	117248667	117248667	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	6	117248667	117248667	G	A	SNP	RFX6	ENST00000332958	human	ensembl	74_37	+1	known	missense	c.2363	p.C788Y	1.000	NULL	pfam_DNA-bd_RFX	-	no_errors	RFX6	HGNC	ENSG00000185002				74	0	0	62	5	7.46269
HIVEP1	0	genome.wustl.edu	37	6	12125503	12125503	+	Silent	SNP	T	T	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	6	12125503	12125503	T	C	SNP	HIVEP1	ENST00000379388	human	ensembl	74_37	+1	known	silent	c.5475	p.N1825	0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP1	HGNC	ENSG00000095951				133	0	0	102	26	20.3125
SOGA3	0	genome.wustl.edu	37	6	127796581	127796581	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	6	127796581	127796581	G	T	SNP	SOGA3	ENST00000368268	human	ensembl	74_37	-1	known	missense	c.2590	p.R864S	1.000	NULL	pfam_SOGA	-	no_errors	SOGA3	HGNC	ENSG00000214338				142	0	0	101	22	17.8862
TMEM200A	0	genome.wustl.edu	37	6	130762913	130762913	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	6	130762913	130762913	C	G	SNP	TMEM200A	ENST00000296978	human	ensembl	74_37	+1	known	missense	c.1346	p.A449G	0.007	NULL	pfam_DUF2371_TMEM200	-	no_errors	TMEM200A	HGNC	ENSG00000164484				87	0	0	77	10	11.4943
GFOD1	0	genome.wustl.edu	37	6	13365634	13365634	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	6	13365634	13365634	C	T	SNP	GFOD1	ENST00000379287	human	ensembl	74_37	-1	known	missense	c.514	p.G172S	1.000	pfam_OxRdtase_C	pfam_Oxidoreductase_N,pfam_OxRdtase_C	-	no_errors	GFOD1	HGNC	ENSG00000145990				41	0	0	22	4	15.3846
MAP7	0	genome.wustl.edu	37	6	136698972	136698972	+	Silent	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	6	136698972	136698972	G	A	SNP	MAP7	ENST00000454590	human	ensembl	74_37	-1	known	silent	c.738	p.S246	1.000	NULL	pfam_MAP7	-	no_errors	MAP7	HGNC	ENSG00000135525				79	0	0	71	14	16.4706
MAP7	0	genome.wustl.edu	37	6	136742893	136742893	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	6	136742893	136742893	G	A	SNP	MAP7	ENST00000454590	human	ensembl	74_37	-1	known	missense	c.178	p.R60C	0.718	NULL	pfam_MAP7	-	no_errors	MAP7	HGNC	ENSG00000135525				127	0	0	117	22	15.8273
TNFAIP3	0	genome.wustl.edu	37	6	138202374	138202374	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	6	138202374	138202374	C	T	SNP	TNFAIP3	ENST00000237289	human	ensembl	74_37	+1	known	missense	c.2291	p.A764V	1.000	pfam_Znf_A20,smart_Znf_A20,pfscan_Znf_A20	pfam_Znf_A20,pfam_OTU,smart_Znf_A20,pfscan_OTU,pfscan_Znf_A20	-	no_errors	TNFAIP3	HGNC	ENSG00000118503				150	0	0	130	24	15.5844
GRM1	0	genome.wustl.edu	37	6	146351044	146351044	+	Silent	SNP	C	C	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	6	146351044	146351044	C	A	SNP	GRM1	ENST00000282753	human	ensembl	74_37	+1	known	silent	c.391	p.R131	1.000	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,prints_GPCR_3_mtglu_rcpt_1,prints_GPCR_3_mtglu_rcpt_5	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_Metabotropic_Glu_rcpt_Homer-bd,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3_mtglu_rcpt_1,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_5	-	no_errors	GRM1	HGNC	ENSG00000152822				105	0	0	62	14	18.4211
PLEKHG1	0	genome.wustl.edu	37	6	151054849	151054849	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	6	151054849	151054849	G	A	SNP	PLEKHG1	ENST00000358517	human	ensembl	74_37	+1	known	missense	c.32	p.S11N	1.000	NULL	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG1	HGNC	ENSG00000120278				132	0	0	118	20	14.4928
C6orf211	0	genome.wustl.edu	37	6	151789994	151789994	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	6	151789994	151789994	G	A	SNP	C6orf211	ENST00000367294	human	ensembl	74_37	+1	known	missense	c.1075	p.A359T	1.000	pfam_DUF89,superfamily_DUF89	pfam_DUF89,superfamily_DUF89	-	no_errors	C6orf211	HGNC	ENSG00000146476				92	0	0	95	18	15.9292
SYNE1	0	genome.wustl.edu	37	6	152734552	152734552	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	6	152734552	152734552	T	G	SNP	SYNE1	ENST00000265368	human	ensembl	74_37	-1	known	missense	c.6165	p.E2055D	0.995	superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018				145	0	0	118	27	18.6207
JARID2	0	genome.wustl.edu	37	6	15496729	15496729	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	6	15496729	15496729	C	T	SNP	JARID2	ENST00000341776	human	ensembl	74_37	+1	known	missense	c.1273	p.R425W	1.000	NULL	pfam_JmjC_dom,pfam_ARID/BRIGHT_DNA-bd,pfam_TF_JmjN,pfam_Znf_C5HC2,superfamily_ARID/BRIGHT_DNA-bd,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	JARID2	HGNC	ENSG00000008083				87	0	0	68	5	6.84932
JARID2	0	genome.wustl.edu	37	6	15520332	15520332	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	6	15520332	15520332	C	T	SNP	JARID2	ENST00000341776	human	ensembl	74_37	+1	known	silent	c.3591	p.C1197	0.996	NULL	pfam_JmjC_dom,pfam_ARID/BRIGHT_DNA-bd,pfam_TF_JmjN,pfam_Znf_C5HC2,superfamily_ARID/BRIGHT_DNA-bd,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	JARID2	HGNC	ENSG00000008083				55	0	0	50	12	19.3548
TULP4	0	genome.wustl.edu	37	6	158900838	158900838	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	6	158900838	158900838	C	T	SNP	TULP4	ENST00000367097	human	ensembl	74_37	+1	known	missense	c.1082	p.S361L	0.951	superfamily_WD40_repeat_dom,superfamily_Tumour_necrosis_fac-like_dom	pfam_Tubby_C,pfam_SOCS_C,pfam_WD40_repeat,superfamily_Tubby_C-like,superfamily_WD40_repeat_dom,superfamily_Tumour_necrosis_fac-like_dom,smart_WD40_repeat,smart_SOCS_C,pfscan_SOCS_C,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TULP4	HGNC	ENSG00000130338				101	0	0	75	13	14.7727
AGPAT4	0	genome.wustl.edu	37	6	161560486	161560486	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	6	161560486	161560486	G	A	SNP	AGPAT4	ENST00000320285	human	ensembl	74_37	-1	known	missense	c.1010	p.T337M	0.997	NULL	pfam_Plipid/glycerol_acylTrfase,smart_Plipid/glycerol_acylTrfase	-	no_errors	AGPAT4	HGNC	ENSG00000026652				191	0	0	153	22	12.5714
C6orf118	0	genome.wustl.edu	37	6	165715715	165715715	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	6	165715715	165715715	C	T	SNP	C6orf118	ENST00000230301	human	ensembl	74_37	-1	known	silent	c.96	p.T32	0.006	NULL	superfamily_Ribonuclease/ribotoxin	-	no_errors	C6orf118	HGNC	ENSG00000112539				140	0	0	104	14	11.8644
GPR31	0	genome.wustl.edu	37	6	167570859	167570859	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	6	167570859	167570859	T	C	SNP	GPR31	ENST00000366834	human	ensembl	74_37	-1	known	missense	c.461	p.E154G	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR31	HGNC	ENSG00000120436				148	0	0	118	15	11.2782
TBP	0	genome.wustl.edu	37	6	170871040	170871040	+	Silent	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	6	170871040	170871040	A	G	SNP	TBP	ENST00000230354	human	ensembl	74_37	+1	known	silent	c.216	p.Q72	0.938	NULL	pfam_TBP,prints_TBP	-	no_errors	TBP	HGNC	ENSG00000112592				98	0	0	57	3	5
TBP	0	genome.wustl.edu	37	6	170871061	170871061	+	Silent	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	6	170871061	170871061	G	A	SNP	TBP	ENST00000230354	human	ensembl	74_37	+1	known	silent	c.237	p.Q79	0.988	NULL	pfam_TBP,prints_TBP	-	no_errors	TBP	HGNC	ENSG00000112592				72	0	0	41	5	10.8696
C6orf62	0	genome.wustl.edu	37	6	24714607	24714607	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	6	24714607	24714607	T	C	SNP	C6orf62	ENST00000378119	human	ensembl	74_37	-1	known	missense	c.368	p.K123R	1.000	NULL	NULL	-	no_errors	C6orf62	HGNC	ENSG00000112308				99	0	0	87	18	17.1429
BTN3A3	0	genome.wustl.edu	37	6	26452193	26452193	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	6	26452193	26452193	A	G	SNP	BTN3A3	ENST00000244519	human	ensembl	74_37	+1	known	missense	c.1309	p.T437A	0.000	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Ig_V-set,superfamily_ConA-like_lec_gl_sf,smart_Ig_sub,smart_Ig_V-set_subgr,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Ig-like_dom,prints_Butyrophylin	-	no_errors	BTN3A3	HGNC	ENSG00000111801				124	0	0	85	14	14.1414
BTN1A1	0	genome.wustl.edu	37	6	26501975	26501975	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	6	26501975	26501975	C	T	SNP	BTN1A1	ENST00000244513	human	ensembl	74_37	+1	known	silent	c.237	p.D79	0.000	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_SPRY_rcpt,pfam_Ig_V-set,pfam_CD80_C2-set,superfamily_ConA-like_lec_gl_sf,smart_Ig_sub,smart_Ig_V-set_subgr,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Ig-like_dom,prints_Butyrophylin	-	no_errors	BTN1A1	HGNC	ENSG00000124557				55	0	0	27	6	18.1818
NKAPL	0	genome.wustl.edu	37	6	28227433	28227433	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	6	28227433	28227433	G	A	SNP	NKAPL	ENST00000343684	human	ensembl	74_37	+1	known	missense	c.284	p.R95H	0.000	NULL	pfam_DUF926	-	no_errors	NKAPL	HGNC	ENSG00000189134				103	1	0.961538	76	18	19.1489
OR5V1	0	genome.wustl.edu	37	6	29323689	29323689	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	6	29323689	29323689	A	G	SNP	OR5V1	ENST00000377154	human	ensembl	74_37	-1	known	missense	c.284	p.V95A	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5V1	HGNC	ENSG00000243729				99	0	0	80	16	16.6667
HLA-A	0	genome.wustl.edu	37	6	29910672	29910672	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	6	29910672	29910672	C	A	SNP	HLA-A	ENST00000376806	human	ensembl	74_37	+1	known	missense	c.212	p.P71Q	0.914	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,pfam_MHC_I_a_C,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like_dom,prints_MHC_I_a	-	no_errors	HLA-A	HGNC	ENSG00000206503				56	0	0	38	14	26.9231
PPP1R11	0	genome.wustl.edu	37	6	30036905	30036905	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	6	30036905	30036905	G	A	SNP	PPP1R11	ENST00000376772	human	ensembl	74_37	+1	known	missense	c.203	p.R68Q	1.000	pfam_PPI_Ypi1	pfam_PPI_Ypi1	-	no_errors	PPP1R11	HGNC	ENSG00000204619				86	0	0	60	18	23.0769
HLA-B	0	genome.wustl.edu	37	6	31323371	31323371	+	Splice_Site	SNP	T	T	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	6	31323371	31323371	T	G	SNP	HLA-B	ENST00000412585	human	ensembl	74_37	-1	known	splice_site	c.620-2	e4-2	0.926	-	-	-	no_errors	HLA-B	HGNC	ENSG00000234745				167	0	0	157	39	19.898
PRRC2A	0	genome.wustl.edu	37	6	31597533	31597533	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	6	31597533	31597533	G	A	SNP	PRRC2A	ENST00000376007	human	ensembl	74_37	+1	known	missense	c.2165	p.R722Q	1.000	NULL	pfam_BAT2_N	-	no_errors	PRRC2A	HGNC	ENSG00000204469				83	0	0	62	10	13.8889
VARS	0	genome.wustl.edu	37	6	31747238	31747238	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	6	31747238	31747238	G	A	SNP	VARS	ENST00000375663	human	ensembl	74_37	-1	known	missense	c.3364	p.R1122W	1.000	pfam_V/L/I-tRNA-synth_anticodon-bd,superfamily_tRNAsynth_1a_anticodon-bd,tigrfam_Valyl-tRNA_ligase	pfam_aa-tRNA-synth_Ia,pfam_V/L/I-tRNA-synth_anticodon-bd,pfam_Glutathione_S-Trfase_N,pfam_Methionyl/Leucyl_tRNA_Synth,pfam_GST_C,superfamily_Val/Leu/Ile-tRNA-synth_edit,superfamily_tRNAsynth_1a_anticodon-bd,superfamily_Glutathione-S-Trfase_C-like,superfamily_tRNA-bd_arm,prints_Valyl-tRNA_ligase,tigrfam_Valyl-tRNA_ligase	-	no_errors	VARS	HGNC	ENSG00000204394				52	0	0	41	7	14.5833
TNXB	0	genome.wustl.edu	37	6	32035685	32035685	+	Silent	SNP	C	C	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	6	32035685	32035685	C	A	SNP	TNXB	ENST00000375247	human	ensembl	74_37	-1	known	silent	c.6297	p.G2099	0.995	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNXB	HGNC	ENSG00000168477				105	0	0	94	16	14.5455
COL11A2	0	genome.wustl.edu	37	6	33137233	33137233	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	6	33137233	33137233	G	A	SNP	COL11A2	ENST00000341947	human	ensembl	74_37	-1	known	missense	c.3725	p.S1242L	0.998	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL11A2	HGNC	ENSG00000204248				63	0	0	33	9	21.4286
BAK1	0	genome.wustl.edu	37	6	33543205	33543205	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	6	33543205	33543205	C	T	SNP	BAK1	ENST00000360661	human	ensembl	74_37	-1	known	missense	c.220	p.V74M	1.000	NULL	pfam_Blc2_fam,pfscan_Bcl2-like,prints_Blc2_fam	-	no_errors	BAK1	HGNC	ENSG00000030110				64	0	0	50	19	27.5362
PPARD	0	genome.wustl.edu	37	6	35389648	35389648	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	6	35389648	35389648	C	T	SNP	PPARD	ENST00000311565	human	ensembl	74_37	+1	known	missense	c.337	p.R113C	1.000	pfam_Znf_hrmn_rcpt,smart_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_1Cnucl_rcpt,prints_Str_hrmn_rcpt,prints_1Cnucl_rcpt_B,prints_Znf_hrmn_rcpt,prints_1Cnucl_rcpt_A	-	no_errors	PPARD	HGNC	ENSG00000112033				68	0	0	56	12	17.6471
TULP1	0	genome.wustl.edu	37	6	35473838	35473838	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	6	35473838	35473838	T	C	SNP	TULP1	ENST00000229771	human	ensembl	74_37	-1	known	missense	c.941	p.K314R	1.000	pfam_Tubby_C,superfamily_Tubby_C-like	pfam_Tubby_C,superfamily_Tubby_C-like,prints_Tubby_C	-	no_errors	TULP1	HGNC	ENSG00000112041				129	0	0	142	8	5.33333
PPIL1	0	genome.wustl.edu	37	6	36842542	36842542	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	6	36842542	36842542	C	T	SNP	PPIL1	ENST00000373699	human	ensembl	74_37	-1	known	missense	c.7	p.A3T	0.992	NULL	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	PPIL1	HGNC	ENSG00000137168				47	0	0	32	4	11.1111
DNAH8	0	genome.wustl.edu	37	6	38747811	38747811	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	6	38747811	38747811	C	T	SNP	DNAH8	ENST00000359357	human	ensembl	74_37	+1	known	silent	c.1458	p.Y486	0.876	pfam_Dynein_heavy_dom-1	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH8	HGNC	ENSG00000124721				58	0	0	35	8	18.6047
LRFN2	0	genome.wustl.edu	37	6	40399747	40399747	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	6	40399747	40399747	G	A	SNP	LRFN2	ENST00000338305	human	ensembl	74_37	-1	known	missense	c.1106	p.T369M	1.000	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	LRFN2	HGNC	ENSG00000156564				71	0	0	44	9	16.9811
XPO5	0	genome.wustl.edu	37	6	43515414	43515414	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	6	43515414	43515414	C	T	SNP	XPO5	ENST00000265351	human	ensembl	74_37	-1	known	silent	c.2091	p.A697	1.000	superfamily_ARM-type_fold	pfam_Exportin-1/Importin-b-like,superfamily_ARM-type_fold,smart_Importin-beta_N	-	no_errors	XPO5	HGNC	ENSG00000124571				79	0	0	50	12	19.3548
TDRD6	0	genome.wustl.edu	37	6	46659451	46659451	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	6	46659451	46659451	A	C	SNP	TDRD6	ENST00000316081	human	ensembl	74_37	+1	known	missense	c.3586	p.S1196R	0.001	NULL	pfam_Tudor,smart_Tudor,pfscan_Tudor	-	no_errors	TDRD6	HGNC	ENSG00000180113				82	0	0	59	12	16.9014
PLA2G7	0	genome.wustl.edu	37	6	46679257	46679257	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	6	46679257	46679257	C	T	SNP	PLA2G7	ENST00000274793	human	ensembl	74_37	-1	known	silent	c.639	p.E213	0.000	pfam_PAF_acetylhydro,pirsf_PAF_acetylhydro_eukaryote	pfam_PAF_acetylhydro,pirsf_PAF_acetylhydro_eukaryote	-	no_errors	PLA2G7	HGNC	ENSG00000146070				166	0	0	142	33	18.8571
GPR111	0	genome.wustl.edu	37	6	47649996	47649996	+	Silent	SNP	C	C	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	6	47649996	47649996	C	A	SNP	GPR111	ENST00000296862	human	ensembl	74_37	+1	known	silent	c.1701	p.G567	1.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR111	HGNC	ENSG00000164393				95	0	0	75	10	11.7647
MUT	0	genome.wustl.edu	37	6	49416614	49416614	+	Silent	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	6	49416614	49416614	A	G	SNP	MUT	ENST00000274813	human	ensembl	74_37	-1	known	silent	c.1359	p.G453	1.000	pfam_MeMalonylCoA_mutase_a/b_cat,superfamily_Cbl-dep_enz_cat,tigrfam_MMCoA_mutase_a_cat	pfam_MeMalonylCoA_mutase_a/b_cat,pfam_Cobalamin-bd,superfamily_Cbl-dep_enz_cat,superfamily_Cobalamin-bd,tigrfam_MMCoA_mutase_a_cat,tigrfam_Acid_CoA_mut_C	-	no_errors	MUT	HGNC	ENSG00000146085				141	0	0	124	18	12.6761
MCM3	0	genome.wustl.edu	37	6	52144285	52144285	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	6	52144285	52144285	C	T	SNP	MCM3	ENST00000596288	human	ensembl	74_37	-1	known	missense	c.779	p.R260H	1.000	superfamily_NA-bd_OB-fold,smart_MCM_DNA-dep_ATPase,prints_Mcm3	pfam_MCM_DNA-dep_ATPase,pfam_Mg_chelatse_chII,superfamily_NA-bd_OB-fold,superfamily_P-loop_NTPase,smart_MCM_DNA-dep_ATPase,smart_AAA+_ATPase,pfscan_MCM_DNA-dep_ATPase,prints_MCM_DNA-dep_ATPase,prints_Mcm3	-	no_errors	MCM3	HGNC	ENSG00000112118				156	0	0	108	30	21.7391
RREB1	0	genome.wustl.edu	37	6	7231972	7231972	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	6	7231972	7231972	G	A	SNP	RREB1	ENST00000379938	human	ensembl	74_37	+1	known	missense	c.3640	p.D1214N	0.509	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	RREB1	HGNC	ENSG00000124782				60	0	0	40	9	18.3673
OOEP	0	genome.wustl.edu	37	6	74078937	74078937	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	6	74078937	74078937	C	T	SNP	OOEP	ENST00000370359	human	ensembl	74_37	-1	known	missense	c.362	p.R121H	0.001	NULL	NULL	-	no_errors	OOEP	HGNC	ENSG00000203907				60	0	0	48	5	9.43396
DSP	0	genome.wustl.edu	37	6	7576615	7576615	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	6	7576615	7576615	C	T	SNP	DSP	ENST00000379802	human	ensembl	74_37	+1	known	missense	c.2719	p.R907C	1.000	smart_Spectrin/alpha-actinin	pfam_Plectin_repeat,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	DSP	HGNC	ENSG00000096696				89	0	0	82	14	14.5833
IBTK	0	genome.wustl.edu	37	6	82950101	82950101	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	6	82950101	82950101	C	T	SNP	IBTK	ENST00000306270	human	ensembl	74_37	-1	known	missense	c.103	p.A35T	0.999	NULL	pfam_Reg_chr_condens,pfam_BTB_POZ,pfam_Ankyrin_rpt,superfamily_RCC1/BLIP-II,superfamily_BTB/POZ_fold,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_BTB/POZ-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_BTB/POZ-like,pfscan_Reg_chr_condens	-	no_errors	IBTK	HGNC	ENSG00000005700				165	0	0	155	32	17.1123
MEPCE	0	genome.wustl.edu	37	7	100028470	100028470	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	7	100028470	100028470	G	A	SNP	MEPCE	ENST00000310512	human	ensembl	74_37	+1	known	missense	c.829	p.G277R	0.987	NULL	pfam_Bin3	-	no_errors	MEPCE	HGNC	ENSG00000146834				166	0	0	137	33	19.4118
NYAP1	0	genome.wustl.edu	37	7	100085812	100085812	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	7	100085812	100085812	C	T	SNP	NYAP1	ENST00000423930	human	ensembl	74_37	+1	known	silent	c.468	p.S156	1.000	NULL	NULL	-	no_errors	NYAP1	HGNC	ENSG00000166924				259	0	0	196	46	19.0083
MUC17	0	genome.wustl.edu	37	7	100678887	100678887	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	7	100678887	100678887	C	T	SNP	MUC17	ENST00000306151	human	ensembl	74_37	+1	known	missense	c.4190	p.P1397L	0.001	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_EG-like_dom,pfscan_SEA_dom	-	no_errors	MUC17	HGNC	ENSG00000169876				637	0	0	518	82	13.6667
TRIM56	0	genome.wustl.edu	37	7	100732016	100732016	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	7	100732016	100732016	A	C	SNP	TRIM56	ENST00000306085	human	ensembl	74_37	+1	known	missense	c.1423	p.S475R	1.000	NULL	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_CheY-like_superfamily,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM56	HGNC	ENSG00000169871				146	0	0	104	25	19.3798
VGF	0	genome.wustl.edu	37	7	100807605	100807605	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	7	100807605	100807605	C	T	SNP	VGF	ENST00000249330	human	ensembl	74_37	-1	known	missense	c.520	p.A174T	0.882	NULL	NULL	-	no_errors	VGF	HGNC	ENSG00000128564				103	0	0	66	13	16.4557
ALKBH4	0	genome.wustl.edu	37	7	102098052	102098052	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	7	102098052	102098052	G	A	SNP	ALKBH4	ENST00000292566	human	ensembl	74_37	-1	known	missense	c.698	p.A233V	0.999	pfam_Oxoglu/Fe-dep_dioxygenase	pfam_Oxoglu/Fe-dep_dioxygenase	-	no_errors	ALKBH4	HGNC	ENSG00000160993				16	0	0	19	6	24
DNAJC2	0	genome.wustl.edu	37	7	102982389	102982389	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	7	102982389	102982389	C	T	SNP	DNAJC2	ENST00000379263	human	ensembl	74_37	-1	known	missense	c.77	p.C26Y	1.000	superfamily_DnaJ_domain	pfam_SANT/Myb,pfam_DnaJ_domain,superfamily_DnaJ_domain,superfamily_Homeodomain-like,smart_DnaJ_domain,smart_SANT/Myb,pfscan_Myb-like_dom,pfscan_DnaJ_domain	-	no_errors	DNAJC2	HGNC	ENSG00000105821				71	0	0	45	12	21.0526
PSMC2	0	genome.wustl.edu	37	7	103004675	103004675	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	7	103004675	103004675	C	T	SNP	PSMC2	ENST00000292644	human	ensembl	74_37	+1	known	missense	c.677	p.A226V	1.000	pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase,tigrfam_26S_Psome_P45	pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase,tigrfam_26S_Psome_P45	-	no_errors	PSMC2	HGNC	ENSG00000161057				103	1	0.961538	81	14	14.7368
RELN	0	genome.wustl.edu	37	7	103293021	103293021	+	Silent	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	7	103293021	103293021	A	G	SNP	RELN	ENST00000424685	human	ensembl	74_37	-1	known	silent	c.1740	p.C580	1.000	NULL	pfam_EGF_extracell,pfam_Reeler_dom,pfam_BNR_rpt,superfamily_Sialidases,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Reeler_dom	-	no_errors	RELN	HGNC	ENSG00000189056				91	0	0	67	11	14.1026
PUS7	0	genome.wustl.edu	37	7	105148756	105148756	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	7	105148756	105148756	C	T	SNP	PUS7	ENST00000356362	human	ensembl	74_37	-1	known	silent	c.204	p.G68	0.000	pirsf_PsdUridine_synth_TruD_euk	pfam_PsdUridine_synth_TruD,superfamily_PsdUridine_synth_cat_dom,pirsf_PsdUridine_synth_TruD_euk,pfscan_PsdUridine_synth_TruD_insert,tigrfam_PsdUridine_synth_TruD	-	no_errors	PUS7	HGNC	ENSG00000091127				201	0	0	153	27	15
LAMB4	0	genome.wustl.edu	37	7	107738955	107738955	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	7	107738955	107738955	G	A	SNP	LAMB4	ENST00000205386	human	ensembl	74_37	-1	known	missense	c.1253	p.S418F	0.002	pfam_EGF_laminin,smart_EGF_laminin,pfscan_EGF_laminin	pfam_EGF_laminin,pfam_Laminin_N,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,pfscan_Laminin_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB4	HGNC	ENSG00000091128				80	0	0	76	7	8.43373
TMEM168	0	genome.wustl.edu	37	7	112423832	112423832	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	7	112423832	112423832	C	T	SNP	TMEM168	ENST00000312814	human	ensembl	74_37	-1	known	missense	c.1049	p.R350H	1.000	superfamily_ConA-like_lec_gl_sf	superfamily_ConA-like_lec_gl_sf	-	no_errors	TMEM168	HGNC	ENSG00000146802				225	0	0	194	12	5.82524
C7orf60	0	genome.wustl.edu	37	7	112555379	112555379	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	7	112555379	112555379	C	T	SNP	C7orf60	ENST00000297145	human	ensembl	74_37	-1	known	missense	c.284	p.R95H	1.000	NULL	pfam_DUF3321	-	no_errors	C7orf60	HGNC	ENSG00000164603				78	0	0	79	15	15.9574
PPP1R3A	0	genome.wustl.edu	37	7	113558541	113558541	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	7	113558541	113558541	C	G	SNP	PPP1R3A	ENST00000284601	human	ensembl	74_37	-1	known	missense	c.511	p.D171H	1.000	pfam_CBM_21,pfscan_CBM_21	pfam_CBM_21,pfscan_CBM_21	-	no_errors	PPP1R3A	HGNC	ENSG00000154415				68	0	0	44	8	15.3846
ANKRD7	0	genome.wustl.edu	37	7	117874902	117874902	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	7	117874902	117874902	G	A	SNP	ANKRD7	ENST00000357099	human	ensembl	74_37	+1	known	missense	c.502	p.E168K	0.005	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD7	HGNC	ENSG00000106013				55	0	0	47	10	17.5439
PTPRZ1	0	genome.wustl.edu	37	7	121679626	121679626	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	7	121679626	121679626	A	C	SNP	PTPRZ1	ENST00000393386	human	ensembl	74_37	+1	known	missense	c.5621	p.N1874T	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Carbonic_anhydrase_a,pfam_Fibronectin_type3,superfamily_Carbonic_anhydrase_a,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Carbonic_anhydrase_a,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRZ1	HGNC	ENSG00000106278				57	0	0	27	6	18.1818
SMO	0	genome.wustl.edu	37	7	128850231	128850231	+	Silent	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	7	128850231	128850231	G	A	SNP	SMO	ENST00000249373	human	ensembl	74_37	+1	known	silent	c.1494	p.L498	0.996	pfam_Frizzled	pfam_Frizzled,pfam_Frizzled_dom,pfam_GPCR_2_secretin-like,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	SMO	HGNC	ENSG00000128602				103	0	0	75	11	12.7907
PLXNA4	0	genome.wustl.edu	37	7	131982977	131982977	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	7	131982977	131982977	C	T	SNP	PLXNA4	ENST00000321063	human	ensembl	74_37	-1	known	missense	c.1376	p.R459Q	1.000	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA4	HGNC	ENSG00000221866				79	0	0	55	10	15.3846
ZC3HAV1L	0	genome.wustl.edu	37	7	138713581	138713581	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	7	138713581	138713581	C	T	SNP	ZC3HAV1L	ENST00000275766	human	ensembl	74_37	-1	known	silent	c.627	p.R209	0.027	NULL	NULL	-	no_errors	ZC3HAV1L	HGNC	ENSG00000146858				50	0	0	46	11	19.2982
TBXAS1	0	genome.wustl.edu	37	7	139611034	139611034	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	7	139611034	139611034	G	T	SNP	TBXAS1	ENST00000416849	human	ensembl	74_37	+1	known	missense	c.250	p.G84C	1.000	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_B	-	no_errors	TBXAS1	HGNC	ENSG00000059377				131	1	0.757576	118	20	14.4928
NDUFB2	0	genome.wustl.edu	37	7	140402766	140402766	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	7	140402766	140402766	T	C	SNP	NDUFB2	ENST00000247866	human	ensembl	74_37	+1	known	missense	c.199	p.F67L	1.000	NULL	NULL	-	no_errors	NDUFB2	HGNC	ENSG00000090266				272	2	0.729927	220	44	16.6667
TAS2R3	0	genome.wustl.edu	37	7	141464526	141464526	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	7	141464526	141464526	C	T	SNP	TAS2R3	ENST00000247879	human	ensembl	74_37	+1	known	silent	c.568	p.L190	0.000	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R3	HGNC	ENSG00000127362				70	0	0	50	8	13.7931
TAS2R4	0	genome.wustl.edu	37	7	141478798	141478798	+	Silent	SNP	C	C	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	7	141478798	141478798	C	A	SNP	TAS2R4	ENST00000247881	human	ensembl	74_37	+1	known	silent	c.510	p.I170	0.005	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R4	HGNC	ENSG00000127364				257	1	0.387597	230	39	14.4981
TRPV5	0	genome.wustl.edu	37	7	142605706	142605706	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	7	142605706	142605706	C	T	SNP	TRPV5	ENST00000265310	human	ensembl	74_37	-1	known	missense	c.2164	p.D722N	0.507	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_TRPV5/TRPV6,prints_TRPV5,prints_Ankyrin_rpt,tigrfam_TRP_channel	-	no_errors	TRPV5	HGNC	ENSG00000127412				80	0	0	68	13	16.0494
SSPO	0	genome.wustl.edu	37	7	149502667	149502667	+	RNA	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	7	149502667	149502667	G	A	SNP	SSPO	ENST00000378016	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SSPO	HGNC	ENSG00000197558				47	0	0	39	12	23.5294
GBX1	0	genome.wustl.edu	37	7	150846112	150846112	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	7	150846112	150846112	A	G	SNP	GBX1	ENST00000297537	human	ensembl	74_37	-1	known	missense	c.656	p.L219P	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,prints_Homeobox_metazoa,pfscan_Homeobox_dom	-	no_errors	GBX1	HGNC	ENSG00000164900				487	0	0	378	80	17.4672
INTS1	0	genome.wustl.edu	37	7	1511207	1511207	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	7	1511207	1511207	C	T	SNP	INTS1	ENST00000389470	human	ensembl	74_37	-1	known	silent	c.6867	p.S2289	0.995	superfamily_ARM-type_fold	pfam_DUF3677,superfamily_ARM-type_fold	-	no_errors	INTS1	HGNC	ENSG00000164880				91	0	0	77	15	16.3043
GALNT11	0	genome.wustl.edu	37	7	151800311	151800311	+	Silent	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	7	151800311	151800311	G	A	SNP	GALNT11	ENST00000320311	human	ensembl	74_37	+1	known	silent	c.534	p.T178	0.046	pfam_Glyco_trans_2	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT11	HGNC	ENSG00000178234				72	0	0	65	5	7.14286
GALNT11	0	genome.wustl.edu	37	7	151805218	151805218	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	7	151805218	151805218	G	A	SNP	GALNT11	ENST00000320311	human	ensembl	74_37	+1	known	missense	c.808	p.V270M	1.000	pfam_Glyco_trans_2	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT11	HGNC	ENSG00000178234				67	0	0	52	12	18.75
DNAH11	0	genome.wustl.edu	37	7	21640745	21640745	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	7	21640745	21640745	A	G	SNP	DNAH11	ENST00000328843	human	ensembl	74_37	+1	known	missense	c.3373	p.K1125E	1.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH11	HGNC	ENSG00000105877				65	0	0	85	6	6.59341
SKAP2	0	genome.wustl.edu	37	7	26729927	26729927	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	7	26729927	26729927	T	C	SNP	SKAP2	ENST00000345317	human	ensembl	74_37	-1	known	missense	c.851	p.Q284R	1.000	superfamily_SH3_domain	pfam_Pleckstrin_homology,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_SH3_domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	SKAP2	HGNC	ENSG00000005020				89	0	0	82	17	17.1717
HOXA1	0	genome.wustl.edu	37	7	27134370	27134370	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	7	27134370	27134370	G	A	SNP	HOXA1	ENST00000343060	human	ensembl	74_37	-1	known	missense	c.697	p.R233C	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,prints_Homeobox_metazoa,pfscan_Homeobox_dom	-	no_errors	HOXA1	HGNC	ENSG00000105991				120	1	0.826446	103	27	20.7692
CARD11	0	genome.wustl.edu	37	7	2984023	2984023	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	7	2984023	2984023	C	T	SNP	CARD11	ENST00000396946	human	ensembl	74_37	-1	known	silent	c.507	p.T169	0.721	NULL	pfam_CARD,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,superfamily_PDZ,pfscan_CARD	-	no_errors	CARD11	HGNC	ENSG00000198286				164	0	0	105	25	19.2308
ELMO1	0	genome.wustl.edu	37	7	37136224	37136224	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	7	37136224	37136224	G	A	SNP	ELMO1	ENST00000310758	human	ensembl	74_37	-1	known	missense	c.1300	p.P434S	1.000	pfam_Engulfment_cell_motility_ELMO	pfam_DUF3361,pfam_Engulfment_cell_motility_ELMO,superfamily_ARM-type_fold	-	no_errors	ELMO1	HGNC	ENSG00000155849				82	0	0	75	4	5.06329
POLD2	0	genome.wustl.edu	37	7	44157263	44157263	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	7	44157263	44157263	G	A	SNP	POLD2	ENST00000406581	human	ensembl	74_37	-1	known	missense	c.421	p.R141C	1.000	NULL	pfam_DNA_pol_alpha/epsilon_bsu	-	no_errors	POLD2	HGNC	ENSG00000106628				23	0	0	15	2	11.7647
ADCY1	0	genome.wustl.edu	37	7	45699707	45699707	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	7	45699707	45699707	C	T	SNP	ADCY1	ENST00000297323	human	ensembl	74_37	+1	known	silent	c.1374	p.Y458	0.069	pfam_A/G_cyclase,superfamily_A/G_cyclase	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY1	HGNC	ENSG00000164742				103	0	0	81	17	17.3469
ADCY1	0	genome.wustl.edu	37	7	45725766	45725766	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	7	45725766	45725766	C	T	SNP	ADCY1	ENST00000297323	human	ensembl	74_37	+1	known	missense	c.2279	p.T760I	0.064	NULL	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY1	HGNC	ENSG00000164742				109	0	0	123	7	5.38462
AP5Z1	0	genome.wustl.edu	37	7	4823848	4823848	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	7	4823848	4823848	C	T	SNP	AP5Z1	ENST00000348624	human	ensembl	74_37	+1	known	silent	c.636	p.T212	0.948	NULL	NULL	-	no_errors	AP5Z1	HGNC	ENSG00000242802				15	0	0	12	4	25
ABCA13	0	genome.wustl.edu	37	7	48285466	48285466	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	7	48285466	48285466	G	A	SNP	ABCA13	ENST00000435803	human	ensembl	74_37	+1	known	missense	c.1498	p.A500T	0.054	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA13	HGNC	ENSG00000179869				43	0	0	30	4	11.7647
ASL	0	genome.wustl.edu	37	7	65547883	65547883	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	7	65547883	65547883	C	T	SNP	ASL	ENST00000304874	human	ensembl	74_37	+1	known	missense	c.308	p.T103M	0.010	pfam_Fumarate_lyase_N,superfamily_L-Aspartase-like,tigrfam_Argininosuccinate_lyase	pfam_Fumarate_lyase_N,superfamily_L-Aspartase-like,prints_Fumarate_lyase_fam,tigrfam_Argininosuccinate_lyase	-	no_errors	ASL	HGNC	ENSG00000126522				46	0	0	45	7	13.4615
GTF2IRD2P1	0	genome.wustl.edu	37	7	72683331	72683331	+	RNA	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	7	72683331	72683331	A	G	SNP	GTF2IRD2P1	ENST00000425256	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	GTF2IRD2P1	HGNC	ENSG00000214544				314	0	0	248	42	14.4828
TBL2	0	genome.wustl.edu	37	7	72984992	72984992	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	7	72984992	72984992	G	A	SNP	TBL2	ENST00000305632	human	ensembl	74_37	-1	known	missense	c.1189	p.R397W	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TBL2	HGNC	ENSG00000106638				78	0	0	61	4	6.15385
LIMK1	0	genome.wustl.edu	37	7	73513447	73513447	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	7	73513447	73513447	G	A	SNP	LIMK1	ENST00000336180	human	ensembl	74_37	+1	known	missense	c.487	p.V163I	0.999	superfamily_PDZ	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Znf_LIM,pfam_PDZ,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,superfamily_PDZ,smart_Znf_LIM,smart_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_LIM,pfscan_PDZ,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	LIMK1	HGNC	ENSG00000106683				205	0	0	179	32	15.1659
MIOS	0	genome.wustl.edu	37	7	7612723	7612723	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	7	7612723	7612723	G	A	SNP	MIOS	ENST00000340080	human	ensembl	74_37	+1	known	missense	c.617	p.R206H	1.000	smart_WD40_repeat	smart_WD40_repeat	-	no_errors	MIOS	HGNC	ENSG00000164654				58	0	0	42	13	23.6364
POMZP3	0	genome.wustl.edu	37	7	76255377	76255377	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	7	76255377	76255377	A	G	SNP	POMZP3	ENST00000310842	human	ensembl	74_37	-1	known	missense	c.5	p.V2A	0.032	NULL	pfam_ZP_dom	-	no_errors	POMZP3	HGNC	ENSG00000146707				69	0	0	52	3	5.45455
CD36	0	genome.wustl.edu	37	7	80285858	80285858	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	7	80285858	80285858	A	C	SNP	CD36	ENST00000309881	human	ensembl	74_37	+1	known	missense	c.123	p.Q41H	1.000	pfam_CD36,prints_CD36_antigen	pfam_CD36,prints_CD36_antigen,prints_CD36	-	no_errors	CD36	HGNC	ENSG00000135218				51	0	0	50	8	13.7931
ABCB4	0	genome.wustl.edu	37	7	87073079	87073079	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	7	87073079	87073079	A	T	SNP	ABCB4	ENST00000265723	human	ensembl	74_37	-1	known	missense	c.1130	p.I377N	1.000	NULL	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,pfam_ABC_ATPase_put,pfam_Zeta_toxin_domain,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCB4	HGNC	ENSG00000005471				57	0	0	41	7	14.5833
ATP5J2-PTCD1	0	genome.wustl.edu	37	7	99022445	99022445	+	Silent	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	7	99022445	99022445	G	A	SNP	ATP5J2-PTCD1	ENST00000413834	human	ensembl	74_37	-1	known	silent	c.1857	p.D619	0.664	NULL	pfam_Pentatricopeptide_repeat,pfam_F1F0-ATPsyn_F_prd,tigrfam_Pentatricopeptide_repeat	-	no_errors	ATP5J2-PTCD1	HGNC	ENSG00000248919				71	0	0	38	9	19.1489
PILRB	0	genome.wustl.edu	37	7	99955941	99955941	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	7	99955941	99955941	C	T	SNP	PILRB	ENST00000448382	human	ensembl	74_37	+1	known	silent	c.382	p.L128	0.008	NULL	NULL	-	no_errors	PILRB	HGNC	ENSG00000121716				139	0	0	108	17	13.6
VPS13B	0	genome.wustl.edu	37	8	100523683	100523683	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	8	100523683	100523683	A	G	SNP	VPS13B	ENST00000358544	human	ensembl	74_37	+1	known	missense	c.4651	p.T1551A	1.000	NULL	pfam_Autophagy-rel_C	-	no_errors	VPS13B	HGNC	ENSG00000132549				45	0	0	44	6	12
RGS22	0	genome.wustl.edu	37	8	101076163	101076163	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	8	101076163	101076163	A	C	SNP	RGS22	ENST00000360863	human	ensembl	74_37	-1	known	missense	c.833	p.V278G	0.016	NULL	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam	-	no_errors	RGS22	HGNC	ENSG00000132554				186	1	0.534759	179	34	15.9624
PABPC1	0	genome.wustl.edu	37	8	101733798	101733798	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	8	101733798	101733798	G	A	SNP	PABPC1	ENST00000318607	human	ensembl	74_37	-1	known	missense	c.14	p.A5V	1.000	NULL	pfam_RRM_dom,pfam_PABP_HYD,superfamily_PABP_HYD,smart_RRM_dom,smart_RRM_dom_euk,smart_PABP_HYD,pfscan_RRM_dom,tigrfam_PABP_1234	-	no_errors	PABPC1	HGNC	ENSG00000070756				39	0	0	31	8	20.5128
NCALD	0	genome.wustl.edu	37	8	102731832	102731832	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	8	102731832	102731832	C	T	SNP	NCALD	ENST00000311028	human	ensembl	74_37	-1	known	missense	c.26	p.R9H	1.000	prints_Recoverin	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom,prints_Recoverin	-	no_errors	NCALD	HGNC	ENSG00000104490				91	0	0	92	19	17.1171
RP1L1	0	genome.wustl.edu	37	8	10470612	10470612	+	Silent	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	8	10470612	10470612	G	A	SNP	RP1L1	ENST00000382483	human	ensembl	74_37	-1	known	silent	c.996	p.V332	0.000	NULL	pfam_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1L1	HGNC	ENSG00000183638				156	0	0	141	31	18.0233
NUDCD1	0	genome.wustl.edu	37	8	110308619	110308619	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	8	110308619	110308619	T	A	SNP	NUDCD1	ENST00000239690	human	ensembl	74_37	-1	known	missense	c.453	p.K151N	1.000	NULL	pfam_CS_dom,superfamily_HSP20-like_chaperone,pfscan_CS_dom	-	no_errors	NUDCD1	HGNC	ENSG00000120526				129	1	0.769231	120	30	20
CSMD3	0	genome.wustl.edu	37	8	113657441	113657441	+	Silent	SNP	T	T	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	8	113657441	113657441	T	G	SNP	CSMD3	ENST00000297405	human	ensembl	74_37	-1	known	silent	c.3207	p.G1069	0.999	pfam_CUB_dom,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796				71	0	0	80	19	19.1919
CSMD3	0	genome.wustl.edu	37	8	113966979	113966979	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	8	113966979	113966979	T	C	SNP	CSMD3	ENST00000297405	human	ensembl	74_37	-1	known	missense	c.1354	p.I452V	1.000	NULL	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796				27	0	0	27	6	18.1818
COLEC10	0	genome.wustl.edu	37	8	120114599	120114599	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	8	120114599	120114599	A	G	SNP	COLEC10	ENST00000332843	human	ensembl	74_37	+1	known	missense	c.305	p.E102G	1.000	pfam_Collagen	pfam_C-type_lectin,pfam_Collagen,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	COLEC10	HGNC	ENSG00000184374				53	0	0	46	10	17.8571
ATAD2	0	genome.wustl.edu	37	8	124382158	124382158	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	8	124382158	124382158	T	A	SNP	ATAD2	ENST00000287394	human	ensembl	74_37	-1	known	missense	c.834	p.E278D	0.866	NULL	pfam_ATPase_AAA_core,pfam_Bromodomain,superfamily_P-loop_NTPase,superfamily_Bromodomain,smart_AAA+_ATPase,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	ATAD2	HGNC	ENSG00000156802				51	0	0	38	9	19.1489
FBXO32	0	genome.wustl.edu	37	8	124544175	124544175	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	8	124544175	124544175	G	A	SNP	FBXO32	ENST00000517956	human	ensembl	74_37	-1	known	missense	c.335	p.A112V	1.000	NULL	superfamily_F-box_dom	-	no_errors	FBXO32	HGNC	ENSG00000156804				126	0	0	110	26	19.1176
LONRF1	0	genome.wustl.edu	37	8	12594548	12594548	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	8	12594548	12594548	C	A	SNP	LONRF1	ENST00000398246	human	ensembl	74_37	-1	known	missense	c.1215	p.E405D	0.979	NULL	pfam_Pept_S16_N,pfam_Znf_C3HC4_RING-type,superfamily_PUA-like_domain,smart_TPR_repeat,smart_Znf_RING,smart_Pept_S16_N,pfscan_TPR-contain_dom,pfscan_Znf_RING	-	no_errors	LONRF1	HGNC	ENSG00000154359				109	0	0	99	17	14.6552
NSMCE2	0	genome.wustl.edu	37	8	126114681	126114681	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	8	126114681	126114681	G	T	SNP	NSMCE2	ENST00000287437	human	ensembl	74_37	+1	known	missense	c.109	p.G37C	1.000	NULL	pfscan_Znf_MIZ	-	no_errors	NSMCE2	HGNC	ENSG00000156831				150	0	0	139	19	12.0253
EFR3A	0	genome.wustl.edu	37	8	132952816	132952816	+	Silent	SNP	T	T	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	8	132952816	132952816	T	C	SNP	EFR3A	ENST00000254624	human	ensembl	74_37	+1	known	silent	c.81	p.D27	0.989	NULL	superfamily_ARM-type_fold	-	no_errors	EFR3A	HGNC	ENSG00000132294				19	0	0	15	4	21.0526
DENND3	0	genome.wustl.edu	37	8	142199100	142199100	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	8	142199100	142199100	G	A	SNP	DENND3	ENST00000262585	human	ensembl	74_37	+1	known	missense	c.2860	p.A954T	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_DENN_dom,pfam_dDENN_dom,pfam_WD40_repeat,pfam_uDENN_dom,superfamily_WD40_repeat_dom,smart_DENN_dom,smart_dDENN_dom,smart_WD40_repeat,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_WD40_repeat_dom	-	no_errors	DENND3	HGNC	ENSG00000105339				49	0	0	48	9	15.7895
GPR20	0	genome.wustl.edu	37	8	142367165	142367165	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	8	142367165	142367165	T	C	SNP	GPR20	ENST00000377741	human	ensembl	74_37	-1	known	missense	c.859	p.S287G	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR20	HGNC	ENSG00000204882				80	0	0	75	14	15.7303
LY6D	0	genome.wustl.edu	37	8	143867043	143867043	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	8	143867043	143867043	C	T	SNP	LY6D	ENST00000301263	human	ensembl	74_37	-1	known	missense	c.113	p.C38Y	0.020	pfam_LY6_UPAR,smart_LY6_UPA_recep-like	pfam_LY6_UPAR,smart_LY6_UPA_recep-like	-	no_errors	LY6D	HGNC	ENSG00000167656				98	0	0	96	18	15.7895
GPIHBP1	0	genome.wustl.edu	37	8	144296900	144296900	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	8	144296900	144296900	G	A	SNP	GPIHBP1	ENST00000330824	human	ensembl	74_37	+1	known	missense	c.194	p.C65Y	0.069	pfam_LY6_UPAR	pfam_LY6_UPAR	-	no_errors	GPIHBP1	HGNC	ENSG00000182851				12	0	0	16	4	20
ZNF696	0	genome.wustl.edu	37	8	144378828	144378828	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	8	144378828	144378828	G	A	SNP	ZNF696	ENST00000330143	human	ensembl	74_37	+1	known	missense	c.983	p.R328H	0.010	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF696	HGNC	ENSG00000185730				21	0	0	13	3	18.75
EEF1D	0	genome.wustl.edu	37	8	144662275	144662275	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	8	144662275	144662275	G	A	SNP	EEF1D	ENST00000532400	human	ensembl	74_37	-1	novel	missense	c.161	p.T54M	0.886	NULL	NULL	-	no_errors	EEF1D	HGNC	ENSG00000104529				59	0	0	65	12	15.5844
FAM83H	0	genome.wustl.edu	37	8	144808253	144808253	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	8	144808253	144808253	C	T	SNP	FAM83H	ENST00000388913	human	ensembl	74_37	-1	known	missense	c.3378	p.M1126I	1.000	NULL	pfam_DUF1669	-	no_errors	FAM83H	HGNC	ENSG00000180921				28	0	0	20	5	20
SCRIB	0	genome.wustl.edu	37	8	144890967	144890967	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	8	144890967	144890967	C	A	SNP	SCRIB	ENST00000320476	human	ensembl	74_37	-1	known	missense	c.1927	p.G643W	0.004	NULL	pfam_PDZ,pfam_Leu-rich_rpt,superfamily_PDZ,smart_Leu-rich_rpt_typical-subtyp,smart_PDZ,pfscan_PDZ	-	no_errors	SCRIB	HGNC	ENSG00000180900				116	0	0	133	11	7.63889
EPPK1	0	genome.wustl.edu	37	8	144943762	144943762	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	8	144943762	144943762	C	A	SNP	EPPK1	ENST00000525985	human	ensembl	74_37	-1	known	missense	c.3660	p.E1220D	0.002	NULL	pfam_Plectin_repeat,smart_Plectin_repeat	-	no_errors	EPPK1	HGNC	ENSG00000227184				16	0	0	15	2	11.7647
SCRT1	0	genome.wustl.edu	37	8	145559733	145559733	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	8	145559733	145559733	C	T	SNP	SCRT1	ENST00000332135	human	ensembl	74_37	-1	known	silent	c.99	p.A33	0.526	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SCRT1	HGNC	ENSG00000170616				25	0	0	23	4	14.8148
SLC39A4	0	genome.wustl.edu	37	8	145638044	145638044	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	8	145638044	145638044	C	T	SNP	SLC39A4	ENST00000301305	human	ensembl	74_37	-1	known	missense	c.1822	p.A608T	0.975	pfam_ZIP	pfam_ZIP	-	no_errors	SLC39A4	HGNC	ENSG00000147804				67	0	0	82	7	7.86517
SLC39A4	0	genome.wustl.edu	37	8	145640473	145640473	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	8	145640473	145640473	C	T	SNP	SLC39A4	ENST00000301305	human	ensembl	74_37	-1	known	missense	c.689	p.R230H	0.246	NULL	pfam_ZIP	-	no_errors	SLC39A4	HGNC	ENSG00000147804				86	0	0	87	17	16.3462
CLN8	0	genome.wustl.edu	37	8	1728566	1728566	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	8	1728566	1728566	A	C	SNP	CLN8	ENST00000331222	human	ensembl	74_37	+1	known	missense	c.694	p.T232P	0.001	pfam_TLC-dom,smart_TLC-dom,pfscan_TLC-dom	pfam_TLC-dom,smart_TLC-dom,pfscan_TLC-dom	-	no_errors	CLN8	HGNC	ENSG00000182372				127	0	0	121	15	11.0294
PCM1	0	genome.wustl.edu	37	8	17817868	17817868	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	8	17817868	17817868	T	C	SNP	PCM1	ENST00000325083	human	ensembl	74_37	+1	known	missense	c.2237	p.L746P	1.000	NULL	NULL	-	no_errors	PCM1	HGNC	ENSG00000078674				58	0	0	75	21	21.875
NAT2	0	genome.wustl.edu	37	8	18257800	18257800	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	8	18257800	18257800	C	T	SNP	NAT2	ENST00000286479	human	ensembl	74_37	+1	known	missense	c.287	p.P96L	0.000	pfam_Arylamine_N-AcTrfase	pfam_Arylamine_N-AcTrfase,prints_Arylamine_N-AcTrfase	-	no_errors	NAT2	HGNC	ENSG00000156006				154	0	0	134	21	13.5484
LZTS1	0	genome.wustl.edu	37	8	20107417	20107417	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	8	20107417	20107417	T	G	SNP	LZTS1	ENST00000265801	human	ensembl	74_37	-1	known	missense	c.1607	p.K536T	1.000	NULL	NULL	-	no_errors	LZTS1	HGNC	ENSG00000061337				118	0	0	113	16	12.4031
LZTS1	0	genome.wustl.edu	37	8	20110667	20110667	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	8	20110667	20110667	C	A	SNP	LZTS1	ENST00000265801	human	ensembl	74_37	-1	known	missense	c.775	p.D259Y	0.998	NULL	NULL	-	no_errors	LZTS1	HGNC	ENSG00000061337				129	0	0	138	15	9.80392
GFRA2	0	genome.wustl.edu	37	8	21608373	21608373	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	8	21608373	21608373	C	T	SNP	GFRA2	ENST00000517328	human	ensembl	74_37	-1	known	missense	c.521	p.C174Y	1.000	pfam_GDNF/GAS1,smart_GDNF/GAS1,pirsf_Glial_neurotroph_fac_rcpt_a1/2	pfam_GDNF/GAS1,smart_GDNF/GAS1,pirsf_Glial_neurotroph_fac_rcpt_a1/2,prints_GDNF_rcpt,prints_GDNF_rcpt_a2	-	no_errors	GFRA2	HGNC	ENSG00000168546				76	0	0	66	6	8.33333
BMP1	0	genome.wustl.edu	37	8	22066962	22066962	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	8	22066962	22066962	C	T	SNP	BMP1	ENST00000306385	human	ensembl	74_37	+1	known	silent	c.2580	p.C860	0.759	pirsf_BMP_1/tolloid-like,pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pirsf_BMP_1/tolloid-like,pfam_CUB_dom,pfam_Peptidase_M12A,pfam_EGF-like_Ca-bd_dom,superfamily_CUB_dom,smart_Peptidase_Metallo,smart_CUB_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,prints_Peptidase_M12A,pfscan_CUB_dom,pfscan_EG-like_dom	-	no_errors	BMP1	HGNC	ENSG00000168487				115	0	0	132	22	14.2857
CCAR2	0	genome.wustl.edu	37	8	22473348	22473348	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	8	22473348	22473348	G	A	SNP	CCAR2	ENST00000308511	human	ensembl	74_37	+1	known	missense	c.1531	p.A511T	0.819	NULL	superfamily_NA-bd_OB-fold	-	no_errors	CCAR2	HGNC	ENSG00000158941				107	1	0.925926	117	20	14.5985
NEFM	0	genome.wustl.edu	37	8	24771399	24771399	+	Silent	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	8	24771399	24771399	G	A	SNP	NEFM	ENST00000221166	human	ensembl	74_37	+1	known	silent	c.93	p.P31	1.000	pfam_Intermed_filament_DNA-bd	pfam_IF,pfam_Intermed_filament_DNA-bd,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	NEFM	HGNC	ENSG00000104722				54	0	0	46	11	19.2982
TRIM35	0	genome.wustl.edu	37	8	27145310	27145310	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	8	27145310	27145310	C	T	SNP	TRIM35	ENST00000305364	human	ensembl	74_37	-1	known	silent	c.1239	p.S413	0.006	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM35	HGNC	ENSG00000104228				29	0	0	25	4	13.7931
ZNF395	0	genome.wustl.edu	37	8	28218564	28218564	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	8	28218564	28218564	C	A	SNP	ZNF395	ENST00000344423	human	ensembl	74_37	-1	known	missense	c.78	p.E26D	0.037	NULL	pfscan_Znf_C2H2	-	no_errors	ZNF395	HGNC	ENSG00000186918				52	0	0	51	14	21.5385
INTS9	0	genome.wustl.edu	37	8	28625830	28625830	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	8	28625830	28625830	T	C	SNP	INTS9	ENST00000521022	human	ensembl	74_37	-1	known	missense	c.1810	p.S604G	1.000	NULL	pfam_Beta_Casp	-	no_errors	INTS9	HGNC	ENSG00000104299				224	2	0.884956	225	34	13.1274
KIF13B	0	genome.wustl.edu	37	8	29005051	29005051	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	8	29005051	29005051	G	A	SNP	KIF13B	ENST00000524189	human	ensembl	74_37	-1	known	missense	c.1882	p.R628C	1.000	NULL	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_CAP-Gly_domain,pfam_KIF1B,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_CAP-Gly_domain,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,pfscan_CAP-Gly_domain,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF13B	HGNC	ENSG00000197892				44	0	0	42	6	12.5
CSMD1	0	genome.wustl.edu	37	8	3008955	3008955	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	8	3008955	3008955	C	A	SNP	CSMD1	ENST00000520002	human	ensembl	74_37	-1	known	missense	c.5998	p.D2000Y	1.000	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD1	HGNC	ENSG00000183117				33	0	0	33	3	8.33333
WRN	0	genome.wustl.edu	37	8	30958372	30958372	+	Silent	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	8	30958372	30958372	G	A	SNP	WRN	ENST00000298139	human	ensembl	74_37	+1	known	silent	c.1989	p.T663	0.273	pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd,tigrfam_DNA_helicase_ATP-dep_RecQ	pfam_3'-5'_exonuclease_dom,pfam_Helicase_C,pfam_RQC_domain,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_HRDC_dom,superfamily_P-loop_NTPase,superfamily_RNaseH-like_dom,superfamily_HRDC-like,smart_3'-5'_exonuclease_dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_RQC_domain,smart_HRDC_dom,pfscan_HRDC_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ	-	no_errors	WRN	HGNC	ENSG00000165392				56	0	0	53	12	18.4615
UNC5D	0	genome.wustl.edu	37	8	35579836	35579836	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	8	35579836	35579836	A	G	SNP	UNC5D	ENST00000404895	human	ensembl	74_37	+1	known	missense	c.1226	p.D409G	1.000	NULL	pfam_ZU5,pfam_Ig_I-set,pfam_Thrombospondin_1_rpt,pfam_Death_domain,pfam_Immunoglobulin,superfamily_DEATH-like_dom,superfamily_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,smart_Thrombospondin_1_rpt,smart_ZU5,smart_Death_domain,pfscan_Thrombospondin_1_rpt,pfscan_ZU5,pfscan_Ig-like_dom	-	no_errors	UNC5D	HGNC	ENSG00000156687				266	1	0.374532	263	42	13.7705
RAB11FIP1	0	genome.wustl.edu	37	8	37730005	37730005	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	8	37730005	37730005	G	A	SNP	RAB11FIP1	ENST00000330843	human	ensembl	74_37	-1	known	missense	c.2315	p.A772V	0.000	NULL	pfam_Rab-bd_FIP-RBD,pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	RAB11FIP1	HGNC	ENSG00000156675				133	0	0	118	25	17.4825
ADAM32	0	genome.wustl.edu	37	8	39112035	39112035	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	8	39112035	39112035	G	A	SNP	ADAM32	ENST00000379907	human	ensembl	74_37	+1	known	missense	c.2005	p.G669S	0.840	NULL	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B	-	no_errors	ADAM32	HGNC	ENSG00000197140				20	0	0	5	2	28.5714
IKBKB	0	genome.wustl.edu	37	8	42175289	42175289	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	8	42175289	42175289	C	T	SNP	IKBKB	ENST00000520810	human	ensembl	74_37	+1	known	missense	c.1240	p.L414F	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IKKbetaNEMObind,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ubiquitin_supergroup,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	IKBKB	HGNC	ENSG00000104365				61	0	0	92	6	6.12245
HOOK3	0	genome.wustl.edu	37	8	42837826	42837826	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	8	42837826	42837826	A	G	SNP	HOOK3	ENST00000307602	human	ensembl	74_37	+1	known	missense	c.1378	p.T460A	1.000	pfam_Hook-related_fam	pfam_Hook-related_fam,superfamily_t-SNARE	-	no_errors	HOOK3	HGNC	ENSG00000168172				76	0	0	63	7	10
PRKDC	0	genome.wustl.edu	37	8	48825009	48825009	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	8	48825009	48825009	C	T	SNP	PRKDC	ENST00000314191	human	ensembl	74_37	-1	known	silent	c.2895	p.T965	0.001	superfamily_ARM-type_fold	pfam_NUC194,pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PRKDC	HGNC	ENSG00000253729				214	0	0	189	35	15.625
PXDNL	0	genome.wustl.edu	37	8	52721799	52721799	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	8	52721799	52721799	G	A	SNP	PXDNL	ENST00000356297	human	ensembl	74_37	-1	known	missense	c.106	p.R36C	0.000	NULL	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like_dom	-	no_errors	PXDNL	HGNC	ENSG00000147485				29	0	0	32	5	13.5135
ST18	0	genome.wustl.edu	37	8	53050089	53050089	+	RNA	SNP	G	G	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	8	53050089	53050089	G	T	SNP	ST18	ENST00000518501	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ST18	HGNC	ENSG00000147488				25	0	0	23	4	14.8148
RP1	0	genome.wustl.edu	37	8	55540178	55540178	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	8	55540178	55540178	G	A	SNP	RP1	ENST00000220676	human	ensembl	74_37	+1	known	missense	c.3736	p.A1246T	0.001	NULL	pfam_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1	HGNC	ENSG00000104237				153	0	0	137	34	19.883
RP1	0	genome.wustl.edu	37	8	55540519	55540519	+	Silent	SNP	T	T	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	8	55540519	55540519	T	G	SNP	RP1	ENST00000220676	human	ensembl	74_37	+1	known	silent	c.4077	p.T1359	0.064	NULL	pfam_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1	HGNC	ENSG00000104237				77	0	0	62	7	10.1449
TOX	0	genome.wustl.edu	37	8	59728047	59728047	+	Silent	SNP	A	A	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	8	59728047	59728047	A	C	SNP	TOX	ENST00000361421	human	ensembl	74_37	-1	known	silent	c.1242	p.A414	0.925	NULL	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	TOX	HGNC	ENSG00000198846				65	0	0	63	11	14.8649
PDE7A	0	genome.wustl.edu	37	8	66639191	66639191	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	8	66639191	66639191	A	G	SNP	PDE7A	ENST00000401827	human	ensembl	74_37	-1	known	missense	c.839	p.V280A	1.000	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom,prints_PDEase	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE7A	HGNC	ENSG00000205268				157	0	0	143	22	13.3333
ALG1L13P	0	genome.wustl.edu	37	8	8097785	8097785	+	RNA	SNP	T	T	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	8	8097785	8097785	T	C	SNP	ALG1L13P	ENST00000522393	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.027	-	-	-	no_errors	ALG1L13P	HGNC	ENSG00000253981				28	0	0	22	6	21.4286
MMP16	0	genome.wustl.edu	37	8	89198805	89198805	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	8	89198805	89198805	C	T	SNP	MMP16	ENST00000286614	human	ensembl	74_37	-1	known	missense	c.304	p.G102S	1.000	pirsf_Pept_M10A_Metazoans,superfamily_Peptidoglycan-bd-like,prints_Pept_M10A	pirsf_Pept_M10A_Metazoans,pfam_Hemopexin-like_repeat,pfam_Pept_M10_metallopeptidase,pfam_Pept_M10A_metallopeptidase_C,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin-like_repeat,prints_Pept_M10A	-	no_errors	MMP16	HGNC	ENSG00000156103				176	1	0.564972	185	34	15.5251
PPP1R3B	0	genome.wustl.edu	37	8	8998807	8998807	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	8	8998807	8998807	C	T	SNP	PPP1R3B	ENST00000310455	human	ensembl	74_37	-1	known	missense	c.355	p.A119T	0.883	pirsf_Pase-1_Glycogen_target-su_met	pfam_CBM_21,pirsf_Pase-1_Glycogen_target-su_met,pfscan_CBM_21	-	no_errors	PPP1R3B	HGNC	ENSG00000173281				94	0	0	84	10	10.6383
CALB1	0	genome.wustl.edu	37	8	91078155	91078155	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	8	91078155	91078155	T	C	SNP	CALB1	ENST00000265431	human	ensembl	74_37	-1	known	missense	c.421	p.T141A	0.920	NULL	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	CALB1	HGNC	ENSG00000104327				58	0	0	64	11	14.6667
GDF6	0	genome.wustl.edu	37	8	97157037	97157037	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	8	97157037	97157037	C	T	SNP	GDF6	ENST00000287020	human	ensembl	74_37	-1	known	silent	c.1122	p.A374	1.000	pfam_TGF-b_C,smart_TGF-b_C	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C	-	no_errors	GDF6	HGNC	ENSG00000156466				52	0	0	45	5	10
TSPYL5	0	genome.wustl.edu	37	8	98289908	98289908	+	Silent	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	8	98289908	98289908	A	G	SNP	TSPYL5	ENST00000322128	human	ensembl	74_37	-1	known	silent	c.165	p.A55	0.989	NULL	pfam_NAP_family	-	no_errors	TSPYL5	HGNC	ENSG00000180543				11	0	0	9	5	35.7143
POP1	0	genome.wustl.edu	37	8	99168525	99168525	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	8	99168525	99168525	G	A	SNP	POP1	ENST00000349693	human	ensembl	74_37	+1	known	missense	c.2305	p.A769T	0.002	NULL	pfam_RNase_P/MRP_POP1,pfam_POPLD	-	no_errors	POP1	HGNC	ENSG00000104356				151	0	0	154	20	11.4943
SLC44A1	0	genome.wustl.edu	37	9	108136891	108136891	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	9	108136891	108136891	G	A	SNP	SLC44A1	ENST00000374720	human	ensembl	74_37	+1	known	missense	c.1507	p.A503T	1.000	pfam_Choline_transptr-like	pfam_Choline_transptr-like	-	no_errors	SLC44A1	HGNC	ENSG00000070214				113	0	0	106	26	19.697
IKBKAP	0	genome.wustl.edu	37	9	111674625	111674625	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	9	111674625	111674625	C	T	SNP	IKBKAP	ENST00000374647	human	ensembl	74_37	-1	known	missense	c.1108	p.A370T	1.000	pfam_IKI3,pirsf_IKI3	pfam_IKI3,superfamily_ARM-type_fold,superfamily_UBA-like,pirsf_IKI3	-	no_errors	IKBKAP	HGNC	ENSG00000070061				97	0	0	77	5	6.09756
MUSK	0	genome.wustl.edu	37	9	113445033	113445033	+	Silent	SNP	C	C	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	9	113445033	113445033	C	A	SNP	MUSK	ENST00000374448	human	ensembl	74_37	+1	known	silent	c.159	p.S53	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Prot_kinase_dom,pfam_Frizzled_dom,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Kinase-like_dom,superfamily_Frizzled_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Frizzled_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MUSK	HGNC	ENSG00000030304				142	0	0	121	37	23.4177
C9orf84	0	genome.wustl.edu	37	9	114484788	114484788	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	9	114484788	114484788	G	T	SNP	C9orf84	ENST00000318737	human	ensembl	74_37	-1	known	missense	c.1840	p.L614I	0.001	NULL	superfamily_RuvA_2-like	-	no_errors	C9orf84	HGNC	ENSG00000165181				68	0	0	64	6	8.57143
ZNF618	0	genome.wustl.edu	37	9	116812114	116812114	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	9	116812114	116812114	C	T	SNP	ZNF618	ENST00000374126	human	ensembl	74_37	+1	known	silent	c.2532	p.A844	0.762	superfamily_RNaseH-like_dom	superfamily_RNaseH-like_dom,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF618	HGNC	ENSG00000157657				147	0	0	118	20	14.4928
ZNF618	0	genome.wustl.edu	37	9	116812464	116812464	+	RNA	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	9	116812464	116812464	A	G	SNP	ZNF618	ENST00000470105	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	ZNF618	HGNC	ENSG00000157657				116	0	0	85	13	13.2653
COL27A1	0	genome.wustl.edu	37	9	117044798	117044798	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	9	117044798	117044798	C	T	SNP	COL27A1	ENST00000356083	human	ensembl	74_37	+1	known	missense	c.3833	p.P1278L	1.000	pfam_Collagen	pfam_Collagen,pfam_Fib_collagen_C,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL27A1	HGNC	ENSG00000196739				16	0	0	13	3	18.75
TNC	0	genome.wustl.edu	37	9	117853180	117853180	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	9	117853180	117853180	T	C	SNP	TNC	ENST00000350763	human	ensembl	74_37	-1	known	missense	c.118	p.T40A	0.502	NULL	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNC	HGNC	ENSG00000041982				96	0	0	92	20	17.8571
ASTN2	0	genome.wustl.edu	37	9	120176829	120176829	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	9	120176829	120176829	G	A	SNP	ASTN2	ENST00000313400	human	ensembl	74_37	-1	known	missense	c.388	p.R130C	1.000	NULL	pfam_MACPF,superfamily_Fibronectin_type3,smart_MACPF	-	no_errors	ASTN2	HGNC	ENSG00000148219				58	0	0	60	5	7.69231
FBXW2	0	genome.wustl.edu	37	9	123550083	123550083	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	9	123550083	123550083	A	G	SNP	FBXW2	ENST00000608872	human	ensembl	74_37	-1	known	missense	c.454	p.Y152H	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_F-box_dom,superfamily_WD40_repeat_dom,superfamily_F-box_dom,smart_F-box_dom,smart_WD40_repeat,pfscan_F-box_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	FBXW2	HGNC	ENSG00000119402				66	0	0	56	9	13.8462
NR5A1	0	genome.wustl.edu	37	9	127262986	127262986	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	9	127262986	127262986	C	T	SNP	NR5A1	ENST00000373588	human	ensembl	74_37	-1	known	missense	c.253	p.A85T	1.000	superfamily_Nucl_hormone_rcpt_ligand-bd,pirsf_Steroidogenic_factor_1,pfscan_Znf_hrmn_rcpt	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pirsf_Steroidogenic_factor_1,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	NR5A1	HGNC	ENSG00000136931				114	0	0	82	18	18
LCN2	0	genome.wustl.edu	37	9	130915419	130915419	+	RNA	SNP	G	G	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	9	130915419	130915419	G	T	SNP	LCN2	ENST00000494317	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	LCN2	HGNC	ENSG00000148346				178	1	0.558659	151	28	15.6425
TBC1D13	0	genome.wustl.edu	37	9	131559481	131559481	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	9	131559481	131559481	T	G	SNP	TBC1D13	ENST00000372648	human	ensembl	74_37	+1	known	missense	c.531	p.S177R	0.624	superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D13	HGNC	ENSG00000107021				106	0	0	92	14	13.2075
ASS1	0	genome.wustl.edu	37	9	133355136	133355136	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	9	133355136	133355136	G	A	SNP	ASS1	ENST00000352480	human	ensembl	74_37	+1	known	missense	c.722	p.G241D	0.996	pfam_Arginosuc_synth,tigrfam_Arginosuc_synth	pfam_Arginosuc_synth,pfam_QueC,tigrfam_Arginosuc_synth	-	no_errors	ASS1	HGNC	ENSG00000130707				118	1	0.840336	90	15	14.2857
NTNG2	0	genome.wustl.edu	37	9	135073569	135073569	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	9	135073569	135073569	G	A	SNP	NTNG2	ENST00000360670	human	ensembl	74_37	+1	known	missense	c.430	p.G144S	1.000	pfam_Laminin_N,smart_Laminin_N,pfscan_Laminin_N	pfam_Laminin_N,pfam_EGF_laminin,pfam_EGF_extracell,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	NTNG2	HGNC	ENSG00000196358				61	0	0	44	9	16.9811
BARHL1	0	genome.wustl.edu	37	9	135458245	135458245	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	9	135458245	135458245	G	A	SNP	BARHL1	ENST00000263610	human	ensembl	74_37	+1	known	missense	c.61	p.A21T	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,prints_Homeobox_metazoa,pfscan_Homeobox_dom	-	no_errors	BARHL1	HGNC	ENSG00000125492				131	0	0	126	10	7.35294
RALGDS	0	genome.wustl.edu	37	9	136031293	136031293	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	9	136031293	136031293	C	T	SNP	RALGDS	ENST00000542690	human	ensembl	74_37	-1	known	missense	c.256	p.A86T	1.000	NULL	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_Ras-assoc,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RALGDS	HGNC	ENSG00000160271				134	0	0	100	24	19.3548
DBH	0	genome.wustl.edu	37	9	136501831	136501831	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	9	136501831	136501831	C	T	SNP	DBH	ENST00000393056	human	ensembl	74_37	+1	known	missense	c.338	p.A113V	1.000	pfam_DOMON_domain,smart_DOMON_domain,pfscan_DOMON_domain	pfam_Cu2_ascorb_mOase_N,pfam_DOMON_domain,superfamily_PHM/PNGase_F_dom,smart_DOMON_domain,pfscan_DOMON_domain,prints_Dopamine_b_mOase	-	no_errors	DBH	HGNC	ENSG00000123454				48	0	0	34	7	17.0732
BRD3	0	genome.wustl.edu	37	9	136901431	136901431	+	Silent	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	9	136901431	136901431	G	A	SNP	BRD3	ENST00000303407	human	ensembl	74_37	-1	known	silent	c.1659	p.G553	0.725	NULL	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	BRD3	HGNC	ENSG00000169925				85	0	0	45	11	19.6429
COL5A1	0	genome.wustl.edu	37	9	137642653	137642653	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	9	137642653	137642653	C	T	SNP	COL5A1	ENST00000371817	human	ensembl	74_37	+1	known	silent	c.1587	p.G529	0.019	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL5A1	HGNC	ENSG00000130635				69	0	0	44	9	16.9811
FAM69B	0	genome.wustl.edu	37	9	139616671	139616671	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	9	139616671	139616671	G	A	SNP	FAM69B	ENST00000371692	human	ensembl	74_37	+1	known	missense	c.401	p.R134Q	1.000	NULL	pfam_FAM69_kinase_dom	-	no_errors	FAM69B	HGNC	ENSG00000165716				58	0	0	52	12	18.75
LCN6	0	genome.wustl.edu	37	9	139641886	139641886	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	9	139641886	139641886	A	C	SNP	LCN6	ENST00000341206	human	ensembl	74_37	-1	known	missense	c.220	p.S74A	0.172	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like	-	no_errors	LCN6	HGNC	ENSG00000267206				72	0	0	71	7	8.97436
RABL6	0	genome.wustl.edu	37	9	139732066	139732066	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	9	139732066	139732066	A	G	SNP	RABL6	ENST00000371663	human	ensembl	74_37	+1	known	missense	c.1081	p.R361G	0.200	NULL	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Rab_type,prints_Small_GTPase	-	no_errors	RABL6	HGNC	ENSG00000196642				15	0	0	10	3	23.0769
MAMDC4	0	genome.wustl.edu	37	9	139749902	139749902	+	Silent	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	9	139749902	139749902	G	A	SNP	MAMDC4	ENST00000445819	human	ensembl	74_37	+1	known	silent	c.1302	p.P434	0.000	NULL	pfam_MAM_dom,pfam_LDrepeatLR_classA_rpt,superfamily_ConA-like_lec_gl_sf,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_MAM_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_MAM_dom,prints_LDrepeatLR_classA_rpt	-	no_errors	MAMDC4	HGNC	ENSG00000177943				30	0	0	22	7	24.1379
EXD3	0	genome.wustl.edu	37	9	140289857	140289857	+	Splice_Site	SNP	C	C	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	9	140289857	140289857	C	A	SNP	EXD3	ENST00000340951	human	ensembl	74_37	-1	known	splice_site	c.1-1	e1-1	0.039	-	-	-	no_errors	EXD3	HGNC	ENSG00000187609				54	0	0	24	11	31.4286
CACNA1B	0	genome.wustl.edu	37	9	140777297	140777297	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	9	140777297	140777297	C	T	SNP	CACNA1B	ENST00000371355	human	ensembl	74_37	+1	known	silent	c.492	p.N164	0.235	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_hand_dom,prints_VDCCAlpha1,prints_VDCC_N_a1su,prints_PKD_2	-	no_errors	CACNA1B	HGNC	ENSG00000148408				360	0	0	293	34	10.3976
ZDHHC21	0	genome.wustl.edu	37	9	14674235	14674235	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	9	14674235	14674235	A	T	SNP	ZDHHC21	ENST00000380916	human	ensembl	74_37	-1	known	missense	c.104	p.V35D	1.000	NULL	pfam_Znf_DHHC_palmitoyltrfase,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC21	HGNC	ENSG00000175893				116	0	0	79	7	8.13953
FREM1	0	genome.wustl.edu	37	9	14859279	14859279	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	9	14859279	14859279	G	A	SNP	FREM1	ENST00000380881	human	ensembl	74_37	-1	known	missense	c.533	p.A178V	0.161	NULL	pfam_C-type_lectin,pfam_Calx_beta,superfamily_C-type_lectin_fold,superfamily_Cadherin-like,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	FREM1	HGNC	ENSG00000164946				172	0	0	134	33	19.7605
TTC39B	0	genome.wustl.edu	37	9	15214143	15214143	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	9	15214143	15214143	C	T	SNP	TTC39B	ENST00000512701	human	ensembl	74_37	-1	known	missense	c.476	p.R159H	0.986	pfam_OMP_IML2_mit/TPR_39	pfam_OMP_IML2_mit/TPR_39,smart_TPR_repeat	-	no_errors	TTC39B	HGNC	ENSG00000155158				54	0	0	42	8	16
MLLT3	0	genome.wustl.edu	37	9	20622265	20622265	+	RNA	SNP	C	C	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	9	20622265	20622265	C	G	SNP	MLLT3	ENST00000475957	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MLLT3	HGNC	ENSG00000171843				45	0	0	34	7	17.0732
TEK	0	genome.wustl.edu	37	9	27204916	27204916	+	Silent	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	9	27204916	27204916	G	A	SNP	TEK	ENST00000380036	human	ensembl	74_37	+1	known	silent	c.2217	p.A739	0.000	superfamily_Fibronectin_type3	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Tyr_kin_Tie2_Ig-like_dom-1_N,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	TEK	HGNC	ENSG00000120156				224	0	0	165	24	12.6984
IFNK	0	genome.wustl.edu	37	9	27524595	27524595	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	9	27524595	27524595	C	A	SNP	IFNK	ENST00000276943	human	ensembl	74_37	+1	known	missense	c.261	p.F87L	0.560	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta	-	no_errors	IFNK	HGNC	ENSG00000147896				186	0	0	126	29	18.7097
TOPORS	0	genome.wustl.edu	37	9	32550787	32550787	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	9	32550787	32550787	C	T	SNP	TOPORS	ENST00000360538	human	ensembl	74_37	-1	known	silent	c.183	p.A61	0.076	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	TOPORS	HGNC	ENSG00000197579				82	0	0	67	16	19.2771
UNC13B	0	genome.wustl.edu	37	9	35396854	35396854	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	9	35396854	35396854	G	A	SNP	UNC13B	ENST00000378496	human	ensembl	74_37	+1	known	missense	c.3205	p.V1069M	1.000	NULL	pfam_Munc13_subgr_dom-2,pfam_Ca-dep_secretion_activator,pfam_C2_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_dom,smart_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13B	HGNC	ENSG00000198722				358	0	0	288	62	17.7143
OR13J1	0	genome.wustl.edu	37	9	35869700	35869700	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	9	35869700	35869700	C	A	SNP	OR13J1	ENST00000377981	human	ensembl	74_37	-1	known	missense	c.699	p.R233S	0.764	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR13J1	HGNC	ENSG00000168828				70	0	0	45	14	23.7288
FRMPD1	0	genome.wustl.edu	37	9	37740128	37740128	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	9	37740128	37740128	G	A	SNP	FRMPD1	ENST00000377765	human	ensembl	74_37	+1	known	missense	c.1603	p.V535I	0.165	NULL	pfam_FERM_central,pfam_PDZ,pfam_FERM_N,superfamily_FERM_central,superfamily_PDZ,smart_PDZ,smart_Band_41_domain,pfscan_FERM_domain,pfscan_PDZ	-	no_errors	FRMPD1	HGNC	ENSG00000070601				154	0	0	130	28	17.7215
DOCK8	0	genome.wustl.edu	37	9	429720	429720	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	9	429720	429720	G	A	SNP	DOCK8	ENST00000453981	human	ensembl	74_37	+1	known	missense	c.4492	p.E1498K	1.000	superfamily_ARM-type_fold	pfam_DOCK_C,pfam_DOCK_C/D_N,superfamily_ARM-type_fold	-	no_errors	DOCK8	HGNC	ENSG00000107099				101	0	0	71	14	16.4706
TJP2	0	genome.wustl.edu	37	9	71836320	71836320	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	9	71836320	71836320	G	A	SNP	TJP2	ENST00000539225	human	ensembl	74_37	+1	known	missense	c.953	p.R318H	0.995	superfamily_PDZ	pfam_PDZ,pfam_GK/Ca_channel_bsu,pfam_SH3_2,superfamily_PDZ,superfamily_P-loop_NTPase,superfamily_SH3_domain,smart_PDZ,smart_GK/Ca_channel_bsu,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like,prints_ZonOcculS2,prints_ZonOcculdens	-	no_errors	TJP2	HGNC	ENSG00000119139				15	0	0	12	4	25
APBA1	0	genome.wustl.edu	37	9	72046264	72046264	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	9	72046264	72046264	C	A	SNP	APBA1	ENST00000265381	human	ensembl	74_37	-1	known	missense	c.2493	p.Q831H	1.000	superfamily_PDZ	pfam_PTB/PI_dom,pfam_PDZ,superfamily_PDZ,smart_PTB/PI_dom,smart_PDZ,pfscan_PDZ,pfscan_PTB/PI_dom	-	no_errors	APBA1	HGNC	ENSG00000107282				215	0	0	153	33	17.7419
TMEM2	0	genome.wustl.edu	37	9	74360375	74360375	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	9	74360375	74360375	G	A	SNP	TMEM2	ENST00000377044	human	ensembl	74_37	-1	known	missense	c.593	p.S198F	1.000	pfam_G8_domain	pfam_G8_domain,superfamily_Pectin_lyase_fold/virulence	-	no_errors	TMEM2	HGNC	ENSG00000135048				174	0	0	138	26	15.8537
RORB	0	genome.wustl.edu	37	9	77275630	77275630	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	9	77275630	77275630	A	C	SNP	RORB	ENST00000396204	human	ensembl	74_37	+1	known	missense	c.768	p.E256D	1.000	superfamily_Nucl_hormone_rcpt_ligand-bd,prints_ROR_rcpt	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_ROR_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_ThyrH_rcpt,pfscan_Znf_hrmn_rcpt	-	no_errors	RORB	HGNC	ENSG00000198963				98	0	0	84	12	12.5
TRPM6	0	genome.wustl.edu	37	9	77415342	77415342	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	9	77415342	77415342	C	T	SNP	TRPM6	ENST00000451710	human	ensembl	74_37	-1	known	missense	c.2066	p.R689H	0.935	NULL	pfam_MHCK_EF2_kinase,pfam_Ion_trans_dom,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	TRPM6	HGNC	ENSG00000119121				96	0	0	86	6	6.52174
PRUNE2	0	genome.wustl.edu	37	9	79469112	79469112	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	9	79469112	79469112	G	A	SNP	PRUNE2	ENST00000376718	human	ensembl	74_37	-1	novel	missense	c.49	p.R17C	0.998	NULL	pfam_Bcl2-/adenovirus-E1B,pfam_CRAL-TRIO_dom,pfam_DHHA2,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	-	no_errors	PRUNE2	HGNC	ENSG00000106772				38	0	0	32	4	11.1111
SPATA31D1	0	genome.wustl.edu	37	9	84608351	84608351	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	9	84608351	84608351	T	G	SNP	SPATA31D1	ENST00000344803	human	ensembl	74_37	+1	known	missense	c.2966	p.V989G	0.000	NULL	NULL	-	no_errors	SPATA31D1	HGNC	ENSG00000214929				286	0	0	212	39	15.5378
ZNF169	0	genome.wustl.edu	37	9	97062645	97062645	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	9	97062645	97062645	C	T	SNP	ZNF169	ENST00000395395	human	ensembl	74_37	+1	known	missense	c.805	p.R269C	0.705	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF169	HGNC	ENSG00000175787				111	0	0	90	22	19.6429
FBP2	0	genome.wustl.edu	37	9	97349699	97349699	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	9	97349699	97349699	C	T	SNP	FBP2	ENST00000375337	human	ensembl	74_37	-1	known	missense	c.223	p.D75N	1.000	pfam_FBPase_class-1/SBPase,pfam_Inositol_monophosphatase,prints_FBPtase,prints_SBPase	pfam_FBPase_class-1/SBPase,pfam_Inositol_monophosphatase,prints_FBPtase,prints_SBPase	-	no_errors	FBP2	HGNC	ENSG00000130957				305	0	0	229	53	18.7943
ERCC6L2	0	genome.wustl.edu	37	9	98643499	98643499	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	9	98643499	98643499	G	A	SNP	ERCC6L2	ENST00000288985	human	ensembl	74_37	+1	novel	missense	c.428	p.R143Q	0.996	pfam_SNF2_N,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd	pfam_SNF2_N,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ERCC6L2	HGNC	ENSG00000182150				65	0	0	49	13	20.9677
CSTF2	0	genome.wustl.edu	37	X	100078882	100078882	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	X	100078882	100078882	T	C	SNP	CSTF2	ENST00000415585	human	ensembl	74_37	+1	known	missense	c.452	p.V151A	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CSTF2	HGNC	ENSG00000101811				112	0	0	92	17	15.5963
DRP2	0	genome.wustl.edu	37	X	100515504	100515504	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	X	100515504	100515504	G	A	SNP	DRP2	ENST00000395209	human	ensembl	74_37	+1	known	missense	c.2768	p.S923N	1.000	pirsf_Dystrophin-related_2	pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_Znf_ZZ,pfam_Spectrin_repeat,pfam_WW_dom,superfamily_WW_dom,smart_Spectrin/alpha-actinin,smart_WW_dom,smart_Znf_ZZ,pirsf_Dystrophin-related_2,pfscan_WW_dom,pfscan_Znf_ZZ	-	no_errors	DRP2	HGNC	ENSG00000102385				200	0	0	155	37	19.2708
NXF4	0	genome.wustl.edu	37	X	101818384	101818384	+	RNA	SNP	T	T	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	X	101818384	101818384	T	C	SNP	NXF4	ENST00000360035	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.473	-	-	-	no_errors	NXF4	HGNC	ENSG00000196970				84	0	0	59	20	25.3165
GPRASP2	0	genome.wustl.edu	37	X	101969892	101969892	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	X	101969892	101969892	T	C	SNP	GPRASP2	ENST00000332262	human	ensembl	74_37	+1	known	missense	c.95	p.V32A	0.001	NULL	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	-	no_errors	GPRASP2	HGNC	ENSG00000158301				210	0	0	156	29	15.6757
NRK	0	genome.wustl.edu	37	X	105178281	105178281	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	X	105178281	105178281	C	T	SNP	NRK	ENST00000428173	human	ensembl	74_37	+1	known	missense	c.3347	p.A1116V	0.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Citron,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_dom	-	no_errors	NRK	HGNC	ENSG00000123572				116	0	0	89	19	17.5926
NRK	0	genome.wustl.edu	37	X	105179301	105179301	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	X	105179301	105179301	C	T	SNP	NRK	ENST00000428173	human	ensembl	74_37	+1	known	silent	c.3642	p.C1214	1.000	pfam_Citron,smart_Citron	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Citron,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_dom	-	no_errors	NRK	HGNC	ENSG00000123572				54	0	0	37	6	13.9535
MUM1L1	0	genome.wustl.edu	37	X	105451074	105451074	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	X	105451074	105451074	A	G	SNP	MUM1L1	ENST00000337685	human	ensembl	74_37	+1	known	missense	c.1649	p.D550G	0.996	NULL	superfamily_PyrdxlP-dep_Trfase	-	no_errors	MUM1L1	HGNC	ENSG00000157502				27	0	0	18	7	28
TBC1D8B	0	genome.wustl.edu	37	X	106070528	106070528	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	X	106070528	106070528	C	T	SNP	TBC1D8B	ENST00000357242	human	ensembl	74_37	+1	known	silent	c.1164	p.C388	0.877	NULL	pfam_Rab-GTPase-TBC_dom,pfam_GRAM,superfamily_Rab-GTPase-TBC_dom,smart_GRAM,smart_Rab-GTPase-TBC_dom,pfscan_EF_hand_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D8B	HGNC	ENSG00000133138				172	0	0	126	21	14.2857
MORC4	0	genome.wustl.edu	37	X	106236537	106236537	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	X	106236537	106236537	C	A	SNP	MORC4	ENST00000355610	human	ensembl	74_37	-1	known	missense	c.231	p.E77D	1.000	pfam_HATPase_ATP-bd,superfamily_HATPase_ATP-bd	pfam_Znf_CW,pfam_HATPase_ATP-bd,superfamily_HATPase_ATP-bd,superfamily_Prefoldin,pfscan_Znf_CW	-	no_errors	MORC4	HGNC	ENSG00000133131				84	0	0	53	16	23.1884
COL4A6	0	genome.wustl.edu	37	X	107448667	107448667	+	Splice_Site	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	X	107448667	107448667	A	G	SNP	COL4A6	ENST00000372216	human	ensembl	74_37	-1	known	splice_site	c.690+2	e11+2	1.000	-	-	-	no_errors	COL4A6	HGNC	ENSG00000197565				346	0	0	290	34	10.4938
CAPN6	0	genome.wustl.edu	37	X	110494317	110494317	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	X	110494317	110494317	T	G	SNP	CAPN6	ENST00000324068	human	ensembl	74_37	-1	known	missense	c.986	p.D329A	1.000	pfam_Peptidase_C2_calpain_cat,smart_Peptidase_C2_calpain_cat,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,pfam_C2_dom,superfamily_Calpain_domain_III,superfamily_C2_dom,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,smart_C2_dom,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	-	no_errors	CAPN6	HGNC	ENSG00000077274				518	0	0	448	50	10.0402
ALG13	0	genome.wustl.edu	37	X	111002996	111002996	+	Silent	SNP	T	T	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	X	111002996	111002996	T	G	SNP	ALG13	ENST00000251943	human	ensembl	74_37	+1	known	silent	c.2634	p.P878	0.979	NULL	pfam_OTU,pfscan_OTU,pfscan_Tudor	-	no_errors	ALG13	HGNC	ENSG00000101901				35	0	0	31	4	11.4286
CXorf56	0	genome.wustl.edu	37	X	118694234	118694234	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	X	118694234	118694234	C	T	SNP	CXorf56	ENST00000371594	human	ensembl	74_37	-1	known	missense	c.239	p.R80Q	1.000	NULL	NULL	-	no_errors	CXorf56	HGNC	ENSG00000018610				178	0	0	159	31	16.3158
C1GALT1C1	0	genome.wustl.edu	37	X	119760212	119760212	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	X	119760212	119760212	A	C	SNP	C1GALT1C1	ENST00000304661	human	ensembl	74_37	-1	known	missense	c.810	p.C270W	0.993	NULL	NULL	-	no_errors	C1GALT1C1	HGNC	ENSG00000171155				158	0	0	118	22	15.7143
CT47B1	0	genome.wustl.edu	37	X	120009089	120009089	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	X	120009089	120009089	G	A	SNP	CT47B1	ENST00000371311	human	ensembl	74_37	-1	known	missense	c.436	p.R146C	0.002	NULL	NULL	-	no_errors	CT47B1	HGNC	ENSG00000236446				190	0	0	157	23	12.7778
GLUD2	0	genome.wustl.edu	37	X	120182522	120182522	+	Silent	SNP	T	T	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	X	120182522	120182522	T	C	SNP	GLUD2	ENST00000328078	human	ensembl	74_37	+1	known	silent	c.984	p.I328	1.000	pfam_Glu/Leu/Phe/Val_DH_C,smart_Glu/Leu/Phe/Val_DH_C	pfam_Glu/Leu/Phe/Val_DH_C,pfam_Glu/Leu/Phe/Val_DH_dimer_dom,smart_Glu/Leu/Phe/Val_DH_C,prints_Glu/Leu/Phe/Val_DH	-	no_errors	GLUD2	HGNC	ENSG00000182890				311	0	0	237	57	19.3878
STAG2	0	genome.wustl.edu	37	X	123196831	123196831	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	X	123196831	123196831	A	G	SNP	STAG2	ENST00000218089	human	ensembl	74_37	+1	known	missense	c.1718	p.Q573R	1.000	superfamily_ARM-type_fold	pfam_STAG,superfamily_ARM-type_fold	-	no_errors	STAG2	HGNC	ENSG00000101972				69	0	0	50	10	16.6667
STAG2	0	genome.wustl.edu	37	X	123217382	123217382	+	Silent	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	X	123217382	123217382	A	G	SNP	STAG2	ENST00000218089	human	ensembl	74_37	+1	known	silent	c.3036	p.R1012	1.000	NULL	pfam_STAG,superfamily_ARM-type_fold	-	no_errors	STAG2	HGNC	ENSG00000101972				103	0	0	91	10	9.90099
TENM1	0	genome.wustl.edu	37	X	123775719	123775719	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	X	123775719	123775719	A	T	SNP	TENM1	ENST00000422452	human	ensembl	74_37	-1	known	missense	c.1999	p.S667T	1.000	pfam_EGF_extracell,smart_EG-like_dom	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,smart_EG-like_dom,pfscan_EG-like_dom,tigrfam_YD	-	no_errors	TENM1	HGNC	ENSG00000009694				346	1	0.288184	284	35	10.9718
TENM1	0	genome.wustl.edu	37	X	123775729	123775729	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	X	123775729	123775729	T	G	SNP	TENM1	ENST00000422452	human	ensembl	74_37	-1	known	missense	c.1989	p.Q663H	1.000	pfam_EGF_extracell,smart_EG-like_dom	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,smart_EG-like_dom,pfscan_EG-like_dom,tigrfam_YD	-	no_errors	TENM1	HGNC	ENSG00000009694				364	0	0	305	36	10.5572
ZDHHC9	0	genome.wustl.edu	37	X	128944952	128944952	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	X	128944952	128944952	G	A	SNP	ZDHHC9	ENST00000357166	human	ensembl	74_37	-1	known	missense	c.907	p.P303S	1.000	NULL	pfam_Znf_DHHC_palmitoyltrfase,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC9	HGNC	ENSG00000188706				114	0	0	92	21	18.5841
ZNF280C	0	genome.wustl.edu	37	X	129380885	129380885	+	Silent	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	X	129380885	129380885	G	A	SNP	ZNF280C	ENST00000370978	human	ensembl	74_37	-1	known	silent	c.126	p.D42	1.000	NULL	smart_Znf_C2H2-like	-	no_errors	ZNF280C	HGNC	ENSG00000056277				317	0	0	266	60	18.4049
DDX26B	0	genome.wustl.edu	37	X	134703344	134703344	+	Silent	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	X	134703344	134703344	A	G	SNP	DDX26B	ENST00000370752	human	ensembl	74_37	+1	known	silent	c.1275	p.P425	0.914	NULL	pfscan_VWF_A	-	no_errors	DDX26B	HGNC	ENSG00000165359				109	0	0	110	16	12.6984
MAP7D3	0	genome.wustl.edu	37	X	135314039	135314039	+	Silent	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	X	135314039	135314039	G	A	SNP	MAP7D3	ENST00000370663	human	ensembl	74_37	-1	known	silent	c.1023	p.D341	0.000	NULL	pfam_MAP7	-	no_errors	MAP7D3	HGNC	ENSG00000129680				154	0	0	140	22	13.5802
FGF13	0	genome.wustl.edu	37	X	137715071	137715071	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	X	137715071	137715071	G	T	SNP	FGF13	ENST00000370603	human	ensembl	74_37	-1	known	missense	c.708	p.S236R	1.000	NULL	pfam_Fibroblast_GF_fam,superfamily_Cytokine_IL1-like,smart_Fibroblast_GF_fam,prints_IL-1_fam/FGF_fam,prints_Fibroblast_GF_fam	-	no_errors	FGF13	HGNC	ENSG00000129682				209	0	0	170	37	17.8744
SOX3	0	genome.wustl.edu	37	X	139586596	139586596	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	X	139586596	139586596	C	T	SNP	SOX3	ENST00000370536	human	ensembl	74_37	-1	known	silent	c.630	p.P210	1.000	pfam_TF_SOX,superfamily_HMG_box_dom	pfam_HMG_box_dom,pfam_TF_SOX,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	SOX3	HGNC	ENSG00000134595				99	0	0	61	22	26.506
MAGEC3	0	genome.wustl.edu	37	X	140953283	140953283	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	X	140953283	140953283	C	A	SNP	MAGEC3	ENST00000298296	human	ensembl	74_37	+1	known	missense	c.150	p.D50E	0.000	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEC3	HGNC	ENSG00000165509				119	0	0	119	18	13.1387
CSF2RA	0	genome.wustl.edu	37	X	1413263	1413263	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	X	1413263	1413263	C	T	SNP	CSF2RA	ENST00000417535	human	ensembl	74_37	+1	known	missense	c.689	p.T230M	0.000	superfamily_Fibronectin_type3	pfam_IL-6_rcpt_alpha-bd,superfamily_Fibronectin_type3	-	no_errors	CSF2RA	HGNC	ENSG00000198223				283	0	0	188	44	18.9655
MAGEA3	0	genome.wustl.edu	37	X	151935622	151935622	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	X	151935622	151935622	A	G	SNP	MAGEA3	ENST00000370278	human	ensembl	74_37	-1	known	missense	c.545	p.L182P	0.032	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEA3	HGNC	ENSG00000221867				129	0	0	62	45	42.0561
NSDHL	0	genome.wustl.edu	37	X	152018835	152018835	+	Silent	SNP	C	C	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	X	152018835	152018835	C	A	SNP	NSDHL	ENST00000370274	human	ensembl	74_37	+1	known	silent	c.135	p.G45	0.968	pfam_3Beta_OHSteriod_DH/Estase,pfam_Epimerase_deHydtase,pfam_dTDP_dehydrorham_reduct,pfam_NmrA	pfam_3Beta_OHSteriod_DH/Estase,pfam_Epimerase_deHydtase,pfam_dTDP_dehydrorham_reduct,pfam_Male_sterile_NAD-bd,pfam_Polysac_CapD-like,pfam_NmrA	-	no_errors	NSDHL	HGNC	ENSG00000147383				255	0	0	218	45	17.1103
ZNF275	0	genome.wustl.edu	37	X	152612686	152612686	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	X	152612686	152612686	C	T	SNP	ZNF275	ENST00000440091	human	ensembl	74_37	+1	known	silent	c.633	p.F211	0.317	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF275	HGNC	ENSG00000063587				113	0	0	81	11	11.9565
BGN	0	genome.wustl.edu	37	X	152770093	152770093	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	X	152770093	152770093	T	C	SNP	BGN	ENST00000331595	human	ensembl	74_37	+1	known	missense	c.4	p.W2R	0.001	pirsf_SLRP_I_decor/aspor/byglycan	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,pirsf_SLRP_I_decor/aspor/byglycan	-	no_errors	BGN	HGNC	ENSG00000182492				59	0	0	52	7	11.8644
PDZD4	0	genome.wustl.edu	37	X	153073995	153073995	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	X	153073995	153073995	C	T	SNP	PDZD4	ENST00000164640	human	ensembl	74_37	-1	known	missense	c.116	p.R39H	0.998	superfamily_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PDZD4	HGNC	ENSG00000067840				31	0	0	24	5	17.2414
FLNA	0	genome.wustl.edu	37	X	153596212	153596212	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	X	153596212	153596212	G	A	SNP	FLNA	ENST00000369850	human	ensembl	74_37	-1	known	missense	c.620	p.P207L	1.000	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNA	HGNC	ENSG00000196924				75	0	0	42	10	19.2308
TAZ	0	genome.wustl.edu	37	X	153640245	153640245	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	X	153640245	153640245	G	A	SNP	TAZ	ENST00000299328	human	ensembl	74_37	+1	known	missense	c.65	p.S22N	0.984	NULL	pfam_Plipid/glycerol_acylTrfase,smart_Plipid/glycerol_acylTrfase,prints_Tafazzin	-	no_errors	TAZ	HGNC	ENSG00000102125				32	0	0	28	9	24.3243
BEND2	0	genome.wustl.edu	37	X	18189251	18189251	+	Silent	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	X	18189251	18189251	G	A	SNP	BEND2	ENST00000380033	human	ensembl	74_37	-1	known	silent	c.2055	p.C685	0.009	NULL	pfam_BEN_domain	-	no_errors	BEND2	HGNC	ENSG00000177324				154	0	0	134	24	15.1899
KLHL34	0	genome.wustl.edu	37	X	21674964	21674964	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	X	21674964	21674964	C	T	SNP	KLHL34	ENST00000379499	human	ensembl	74_37	-1	known	missense	c.943	p.E315K	0.082	pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL34	HGNC	ENSG00000185915				25	0	0	21	4	16
PPP2R3B	0	genome.wustl.edu	37	X	322220	322220	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	X	322220	322220	C	T	SNP	PPP2R3B	ENST00000390665	human	ensembl	74_37	-1	known	missense	c.430	p.V144I	1.000	NULL	pfscan_EF_hand_dom	-	no_errors	PPP2R3B	HGNC	ENSG00000167393				107	0	0	91	5	5.20833
MXRA5	0	genome.wustl.edu	37	X	3228137	3228137	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	X	3228137	3228137	C	T	SNP	MXRA5	ENST00000217939	human	ensembl	74_37	-1	known	missense	c.8107	p.V2703M	0.429	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	MXRA5	HGNC	ENSG00000101825				95	0	0	69	12	14.8148
MXRA5	0	genome.wustl.edu	37	X	3242753	3242753	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	X	3242753	3242753	C	T	SNP	MXRA5	ENST00000217939	human	ensembl	74_37	-1	known	missense	c.973	p.E325K	1.000	NULL	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	MXRA5	HGNC	ENSG00000101825				73	0	0	62	13	17.3333
DDX3X	0	genome.wustl.edu	37	X	41203054	41203054	+	Silent	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	X	41203054	41203054	C	T	SNP	DDX3X	ENST00000399959	human	ensembl	74_37	+1	known	silent	c.744	p.G248	0.227	pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX3X	HGNC	ENSG00000215301				88	0	0	69	9	11.5385
OTUD5	0	genome.wustl.edu	37	X	48781133	48781133	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	X	48781133	48781133	G	A	SNP	OTUD5	ENST00000156084	human	ensembl	74_37	-1	known	missense	c.1475	p.A492V	1.000	NULL	pfam_OTU,pfscan_OTU	-	no_errors	OTUD5	HGNC	ENSG00000068308				43	0	0	37	3	7.5
TFE3	0	genome.wustl.edu	37	X	48887806	48887806	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	X	48887806	48887806	C	G	SNP	TFE3	ENST00000315869	human	ensembl	74_37	-1	known	missense	c.1591	p.G531R	0.453	pfam_bHLH_ZIP_TF_MiT/TFE	pfam_bHLH_ZIP_TF_MiT/TFE,pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	TFE3	HGNC	ENSG00000068323				70	0	0	76	16	17.3913
PPP1R3F	0	genome.wustl.edu	37	X	49127204	49127204	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	X	49127204	49127204	C	T	SNP	PPP1R3F	ENST00000055335	human	ensembl	74_37	+1	known	missense	c.872	p.P291L	1.000	NULL	pfam_CBM_21,pfscan_CBM_21	-	no_errors	PPP1R3F	HGNC	ENSG00000049769				16	0	0	11	4	26.6667
HUWE1	0	genome.wustl.edu	37	X	53574996	53574996	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	X	53574996	53574996	C	T	SNP	HUWE1	ENST00000262854	human	ensembl	74_37	-1	known	missense	c.10274	p.S3425N	1.000	NULL	pfam_E3_Ub_ligase_DUF913,pfam_HECT,pfam_E3_Ub_ligase_DUF908,pfam_WWE-dom,pfam_UBA/Ts_N,superfamily_HECT,superfamily_UBA-like,superfamily_ARM-type_fold,smart_UBA/transl_elong_EF1B_N_euk,smart_HECT,pfscan_HECT,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_WWE-dom	-	no_errors	HUWE1	HGNC	ENSG00000086758				33	0	0	27	5	15.625
FAM120C	0	genome.wustl.edu	37	X	54107839	54107839	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	X	54107839	54107839	A	G	SNP	FAM120C	ENST00000375180	human	ensembl	74_37	-1	known	missense	c.2894	p.V965A	1.000	NULL	NULL	-	no_errors	FAM120C	HGNC	ENSG00000184083				106	0	0	85	15	15
TSR2	0	genome.wustl.edu	37	X	54470537	54470537	+	Nonsense_Mutation	SNP	A	A	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	X	54470537	54470537	A	T	SNP	TSR2	ENST00000375151	human	ensembl	74_37	+1	known	nonsense	c.361	p.K121*	0.000	NULL	pfam_Pre-rRNA_process_TSR2	-	no_errors	TSR2	HGNC	ENSG00000158526				172	0	0	130	20	13.3333
ITIH6	0	genome.wustl.edu	37	X	54815025	54815025	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	X	54815025	54815025	A	T	SNP	ITIH6	ENST00000218436	human	ensembl	74_37	-1	known	missense	c.674	p.I225N	0.894	NULL	pfam_VIT,pfam_ITI_HC_C,pfam_VWF_A,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	ITIH6	HGNC	ENSG00000102313				65	0	0	49	18	26.8657
ALAS2	0	genome.wustl.edu	37	X	55047483	55047483	+	Splice_Site	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	X	55047483	55047483	A	G	SNP	ALAS2	ENST00000330807	human	ensembl	74_37	-1	known	splice_site	c.638+2	e4+2	1.000	-	-	-	no_errors	ALAS2	HGNC	ENSG00000158578				69	0	0	54	13	19.403
RRAGB	0	genome.wustl.edu	37	X	55757850	55757850	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	X	55757850	55757850	G	T	SNP	RRAGB	ENST00000262850	human	ensembl	74_37	+1	known	missense	c.431	p.R144L	1.000	pfam_Gtr1_RagA,pfam_Small_GTPase,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase	pfam_Gtr1_RagA,pfam_Small_GTPase,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase	-	no_errors	RRAGB	HGNC	ENSG00000083750				37	0	0	31	3	8.82353
ZXDA	0	genome.wustl.edu	37	X	57936033	57936033	+	Silent	SNP	G	G	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	X	57936033	57936033	G	A	SNP	ZXDA	ENST00000358697	human	ensembl	74_37	-1	known	silent	c.822	p.C274	0.807	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZXDA	HGNC	ENSG00000198205				31	0	0	28	7	20
NLGN4X	0	genome.wustl.edu	37	X	6069136	6069136	+	Silent	SNP	C	C	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	X	6069136	6069136	C	A	SNP	NLGN4X	ENST00000381093	human	ensembl	74_37	-1	known	silent	c.372	p.L124	0.998	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Neuroligin	-	no_errors	NLGN4X	HGNC	ENSG00000146938				161	0	0	114	34	22.973
MTMR8	0	genome.wustl.edu	37	X	63579408	63579408	+	Splice_Site	SNP	C	C	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	X	63579408	63579408	C	G	SNP	MTMR8	ENST00000374852	human	ensembl	74_37	-1	known	splice_site	c.25-1	e2-1	1.000	-	-	-	no_errors	MTMR8	HGNC	ENSG00000102043				103	0	0	61	11	15.2778
OPHN1	0	genome.wustl.edu	37	X	67430049	67430049	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	X	67430049	67430049	A	G	SNP	OPHN1	ENST00000355520	human	ensembl	74_37	-1	known	missense	c.778	p.C260R	0.945	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom	-	no_errors	OPHN1	HGNC	ENSG00000079482				105	0	0	91	25	21.5517
IGBP1	0	genome.wustl.edu	37	X	69354476	69354476	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	X	69354476	69354476	C	T	SNP	IGBP1	ENST00000342206	human	ensembl	74_37	+1	known	missense	c.292	p.R98C	1.000	pfam_TAP42-like	pfam_TAP42-like	-	no_errors	IGBP1	HGNC	ENSG00000089289				97	0	0	90	14	13.4615
ZDHHC15	0	genome.wustl.edu	37	X	74641702	74641702	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	X	74641702	74641702	G	T	SNP	ZDHHC15	ENST00000373367	human	ensembl	74_37	-1	known	missense	c.860	p.S287Y	1.000	NULL	pfam_Znf_DHHC_palmitoyltrfase,superfamily_Plexin-like_fold,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC15	HGNC	ENSG00000102383				107	0	0	87	18	17.1429
ATRX	0	genome.wustl.edu	37	X	76938509	76938509	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	X	76938509	76938509	T	C	SNP	ATRX	ENST00000373344	human	ensembl	74_37	-1	known	missense	c.2239	p.S747G	1.000	NULL	pfam_SNF2_N,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Znf_FYVE_PHD,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ATRX	HGNC	ENSG00000085224				325	0	0	263	63	19.3252
KAL1	0	genome.wustl.edu	37	X	8522076	8522076	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	X	8522076	8522076	C	T	SNP	KAL1	ENST00000262648	human	ensembl	74_37	-1	known	missense	c.1271	p.R424Q	0.059	superfamily_Fibronectin_type3	pfam_Fibronectin_type3,pfam_WAP-type_4-diS_core,superfamily_Fibronectin_type3,superfamily_WAP-type_4-diS_core,smart_WAP-type_4-diS_core,smart_Fibronectin_type3,pfscan_Fibronectin_type3,prints_WAP-type_4-diS_core	-	no_errors	KAL1	HGNC	ENSG00000011201				50	0	0	44	8	15.3846
PCDH19	0	genome.wustl.edu	37	X	99551740	99551740	+	Silent	SNP	A	A	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	X	99551740	99551740	A	G	SNP	PCDH19	ENST00000373034	human	ensembl	74_37	-1	known	silent	c.2982	p.S994	0.996	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH19	HGNC	ENSG00000165194				137	0	0	97	22	18.4874
PCDH19	0	genome.wustl.edu	37	X	99662844	99662844	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	X	99662844	99662844	G	T	SNP	PCDH19	ENST00000373034	human	ensembl	74_37	-1	known	nonsense	c.752	p.S251*	1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH19	HGNC	ENSG00000165194				223	0	0	186	28	13.0841
NMNAT1	0	genome.wustl.edu	37	1	10042384	10042385	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	10042384	10042385	-	G	INS	NMNAT1	ENST00000377205	human	ensembl	74_37	+1	known	frame_shift_ins	c.465_466	p.A156fs	0.998:1.000	pfam_Cyt_trans-like,tigrfam_NAMN_adtrnsfrase	pfam_Cyt_trans-like,tigrfam_NAMN_adtrnsfrase	-	no_errors	NMNAT1	HGNC	ENSG00000173614				212	0	0	157	27	14.6739
SLC16A1	0	genome.wustl.edu	37	1	113471889	113471890	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	113471889	113471890	-	G	INS	SLC16A1	ENST00000369626	human	ensembl	74_37	-1	known	frame_shift_ins	c.42_41	p.D15fs	1.000:1.000	superfamily_MFS_dom_general_subst_transpt,tigrfam_Monocarb_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Monocarb_transpt	-	no_errors	SLC16A1	HGNC	ENSG00000155380				76	0	0	49	9	15.5172
DENND2C	0	genome.wustl.edu	37	1	115165628	115165628	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	115165628	115165628	T	-	DEL	DENND2C	ENST00000393274	human	ensembl	74_37	-1	known	frame_shift_del	c.1036	p.S346fs	0.987	NULL	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND2C	HGNC	ENSG00000175984				139	0	0	135	22	14.0127
SYCP1	0	genome.wustl.edu	37	1	115469134	115469134	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	115469134	115469134	A	-	DEL	SYCP1	ENST00000369518	human	ensembl	74_37	+1	known	frame_shift_del	c.1876	p.G629fs	1.000	pfam_SCP-1	pfam_SCP-1	-	no_errors	SYCP1	HGNC	ENSG00000198765				13	0	0	8	3	27.2727
MTMR11	0	genome.wustl.edu	37	1	149900986	149900988	+	RNA	DEL	AAA	AAA	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	AAA	AAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	149900986	149900988	AAA	-	DEL	MTMR11	ENST00000466496	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.002:0.003	-	-	-	no_errors	MTMR11	HGNC	ENSG00000014914				54	0	0	39	7	15.2174
TRIM46	0	genome.wustl.edu	37	1	155152178	155152179	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	155152178	155152179	-	C	INS	TRIM46	ENST00000334634	human	ensembl	74_37	+1	known	frame_shift_ins	c.1356_1357	p.H454fs	1.000:1.000	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_Fibronectin_type3,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,pfscan_Znf_B-box	-	no_errors	TRIM46	HGNC	ENSG00000163462				62	0	0	44	13	22.807
MRPL24	0	genome.wustl.edu	37	1	156708445	156708445	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	156708445	156708445	G	-	DEL	MRPL24	ENST00000361531	human	ensembl	74_37	-1	known	frame_shift_del	c.52	p.H18fs	0.034	NULL	pfam_KOW,superfamily_Translation_prot_SH3-like,smart_KOW,tigrfam_Ribosomal_L24	-	no_errors	MRPL24	HGNC	ENSG00000143314				126	0	0	101	18	15.1261
IGSF9	0	genome.wustl.edu	37	1	159912846	159912846	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	159912846	159912846	G	-	DEL	IGSF9	ENST00000368094	human	ensembl	74_37	-1	known	frame_shift_del	c.154	p.L52fs	0.980	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	IGSF9	HGNC	ENSG00000085552				75	0	0	48	9	15.7895
NAV1	0	genome.wustl.edu	37	1	201618272	201618272	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	201618272	201618272	C	-	DEL	NAV1	ENST00000367296	human	ensembl	74_37	+1	known	frame_shift_del	c.476	p.L161fs	1.000	NULL	superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	NAV1	HGNC	ENSG00000134369				34	0	0	31	10	24.3902
NAV1	0	genome.wustl.edu	37	1	201750218	201750218	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	201750218	201750218	A	-	DEL	NAV1	ENST00000367296	human	ensembl	74_37	+1	known	frame_shift_del	c.1444	p.K483fs	0.001	NULL	superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	NAV1	HGNC	ENSG00000134369				159	0	0	133	29	17.9012
CR2	0	genome.wustl.edu	37	1	207641844	207641844	+	RNA	DEL	T	T	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	207641844	207641844	T	-	DEL	CR2	ENST00000485707	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.038	-	-	-	no_errors	CR2	HGNC	ENSG00000117322				49	0	0	53	7	11.6667
CD34	0	genome.wustl.edu	37	1	208063101	208063102	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	208063101	208063102	AA	-	DEL	CD34	ENST00000367036	human	ensembl	74_37	-1	known	frame_shift_del	c.82_81	p.S28fs	0.000:0.000	NULL	pfam_CD34/Podocalyxin,prints_CD34	-	no_errors	CD34	HGNC	ENSG00000174059				35	0	0	28	5	15.1515
MUL1	0	genome.wustl.edu	37	1	20827876	20827877	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	20827876	20827877	-	T	INS	MUL1	ENST00000264198	human	ensembl	74_37	-1	known	frame_shift_ins	c.366_365	p.N122fs	1.000:1.000	pfam_MULAN	pfam_MULAN,pfscan_Znf_RING	-	no_errors	MUL1	HGNC	ENSG00000090432				118	0	0	106	23	17.8295
GPATCH2	0	genome.wustl.edu	37	1	217793263	217793264	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	217793263	217793264	-	T	INS	GPATCH2	ENST00000366935	human	ensembl	74_37	-1	known	frame_shift_ins	c.635_634	p.R212fs	1.000:1.000	NULL	pfam_G_patch_dom,smart_G_patch_dom,pfscan_G_patch_dom	-	no_errors	GPATCH2	HGNC	ENSG00000092978				159	0	0	123	17	12.1429
DUSP10	0	genome.wustl.edu	37	1	221875662	221875663	+	RNA	DEL	AA	AA	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	221875662	221875663	AA	-	DEL	DUSP10	ENST00000468085	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.040:0.067	-	-	-	no_errors	DUSP10	HGNC	ENSG00000143507				51	0	0	40	13	24.5283
OBSCN	0	genome.wustl.edu	37	1	228559450	228559450	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	228559450	228559450	G	-	DEL	OBSCN	ENST00000422127	human	ensembl	74_37	+1	known	frame_shift_del	c.20971	p.A6993fs	0.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358				65	0	0	52	13	20
SPHAR	0	genome.wustl.edu	37	1	229440936	229440936	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	229440936	229440936	T	-	DEL	SPHAR	ENST00000366688	human	ensembl	74_37	+1	known	frame_shift_del	c.55	p.Y21fs	0.001	NULL	NULL	-	no_errors	SPHAR	HGNC	ENSG00000213029				46	0	0	55	7	11.2903
LYPLA2	0	genome.wustl.edu	37	1	24120833	24120833	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	24120833	24120833	C	-	DEL	LYPLA2	ENST00000374502	human	ensembl	74_37	+1	known	frame_shift_del	c.489	p.A166fs	0.001	NULL	pfam_PLipase/COase/thioEstase,pfam_AB_hydrolase_3	-	no_errors	LYPLA2	HGNC	ENSG00000011009				41	0	0	21	6	22.2222
OR14C36	0	genome.wustl.edu	37	1	248512384	248512384	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	248512384	248512384	T	-	DEL	OR14C36	ENST00000317861	human	ensembl	74_37	+1	known	frame_shift_del	c.308	p.F105fs	0.004	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR14C36	HGNC	ENSG00000177174				78	0	0	69	12	14.8148
SH3BGRL3	0	genome.wustl.edu	37	1	26607440	26607440	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	26607440	26607440	G	-	DEL	SH3BGRL3	ENST00000319041	human	ensembl	74_37	+1	known	frame_shift_del	c.233	p.G80fs	0.000	NULL	pfam_Glut_rich_SH3-bd,pfam_Glutaredoxin,superfamily_Thioredoxin-like_fold	-	no_errors	SH3BGRL3	HGNC	ENSG00000142669				25	0	0	30	3	9.09091
ARID1A	0	genome.wustl.edu	37	1	27105931	27105931	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	27105931	27105931	G	-	DEL	ARID1A	ENST00000324856	human	ensembl	74_37	+1	known	frame_shift_del	c.5542	p.D1850fs	1.000	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1A	HGNC	ENSG00000117713				159	1	0.625	123	35	22.1519
SYTL1	0	genome.wustl.edu	37	1	27680355	27680356	+	RNA	DEL	CT	CT	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	27680355	27680356	CT	-	DEL	SYTL1	ENST00000490170	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	SYTL1	HGNC	ENSG00000142765				60	0	0	51	4	7.27273
ACTRT2	0	genome.wustl.edu	37	1	2939156	2939156	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	2939156	2939156	G	-	DEL	ACTRT2	ENST00000378404	human	ensembl	74_37	+1	known	frame_shift_del	c.906	p.G304fs	0.003	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,smart_Actin-related,prints_Actin-related	-	no_errors	ACTRT2	HGNC	ENSG00000169717				140	0	0	103	18	14.876
ENSG00000271554	0	genome.wustl.edu	37	1	36475027	36475027	+	RNA	DEL	A	A	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	36475027	36475027	A	-	DEL	ENSG00000271554	ENST00000479395	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.011	-	-	-	no_errors	RP4-665N4.8	Clone_based_vega_gene	ENSG00000271554				21	0	0	22	8	26.6667
MAP7D1	0	genome.wustl.edu	37	1	36636763	36636764	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	36636763	36636764	-	C	INS	MAP7D1	ENST00000373151	human	ensembl	74_37	+1	known	frame_shift_ins	c.238_239	p.Q83fs	0.034:0.008	NULL	pfam_MAP7	-	no_errors	MAP7D1	HGNC	ENSG00000116871				111	0	0	107	11	9.32203
MACF1	0	genome.wustl.edu	37	1	39785384	39785385	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	39785384	39785385	-	A	INS	MACF1	ENST00000317713	human	ensembl	74_37	+1	known	frame_shift_ins	c.4009_4010	p.F1339fs	1.000:1.000	smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_dom,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	MACF1	HGNC	ENSG00000127603				74	0	0	43	15	25.8621
MYSM1	0	genome.wustl.edu	37	1	59156023	59156023	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	59156023	59156023	T	-	DEL	MYSM1	ENST00000472487	human	ensembl	74_37	-1	known	frame_shift_del	c.285	p.K95fs	0.822	NULL	pfam_SWIRM,pfam_JAB_MPN_dom,pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,smart_JAB_MPN_dom,pfscan_SWIRM,pfscan_Myb-like_dom	-	no_errors	MYSM1	HGNC	ENSG00000162601				50	0	0	27	6	18.1818
RPL22	0	genome.wustl.edu	37	1	6257785	6257785	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	6257785	6257785	T	-	DEL	RPL22	ENST00000234875	human	ensembl	74_37	-1	known	frame_shift_del	c.44	p.K15fs	1.000	pfam_Ribosomal_L22e	pfam_Ribosomal_L22e	-	no_errors	RPL22	HGNC	ENSG00000116251				46	0	0	52	6	10.3448
LRRIQ3	0	genome.wustl.edu	37	1	74575213	74575213	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	74575213	74575213	T	-	DEL	LRRIQ3	ENST00000354431	human	ensembl	74_37	-1	known	frame_shift_del	c.732	p.K244fs	0.004	pfscan_IQ_motif_EF-hand-BS	pfscan_IQ_motif_EF-hand-BS	-	no_errors	LRRIQ3	HGNC	ENSG00000162620				128	0	0	140	16	10.2564
TTLL7	0	genome.wustl.edu	37	1	84383310	84383310	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	84383310	84383310	T	-	DEL	TTLL7	ENST00000260505	human	ensembl	74_37	-1	known	frame_shift_del	c.1564	p.T522fs	0.933	NULL	pfam_TTL/TTLL_fam	-	no_errors	TTLL7	HGNC	ENSG00000137941				85	0	0	72	12	14.2857
DNASE2B	0	genome.wustl.edu	37	1	84864322	84864322	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	84864322	84864322	G	-	DEL	DNASE2B	ENST00000370665	human	ensembl	74_37	+1	known	frame_shift_del	c.75	p.A27fs	0.004	pfam_DNase_II	pfam_DNase_II	-	no_errors	DNASE2B	HGNC	ENSG00000137976				336	0	0	317	47	12.9121
ZNF644	0	genome.wustl.edu	37	1	91406040	91406040	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	91406040	91406040	T	-	DEL	ZNF644	ENST00000337393	human	ensembl	74_37	-1	known	frame_shift_del	c.871	p.R291fs	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF644	HGNC	ENSG00000122482				71	0	0	76	8	9.52381
EVI5	0	genome.wustl.edu	37	1	93073081	93073081	+	RNA	DEL	A	A	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	93073081	93073081	A	-	DEL	EVI5	ENST00000492513	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	EVI5	HGNC	ENSG00000067208				17	0	0	14	6	30
EVI5	0	genome.wustl.edu	37	1	93169000	93169000	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	93169000	93169000	A	-	DEL	EVI5	ENST00000543509	human	ensembl	74_37	-1	known	frame_shift_del	c.648	p.F216fs	1.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	EVI5	HGNC	ENSG00000067208				87	0	0	81	12	12.9032
CCDC18	0	genome.wustl.edu	37	1	93667516	93667516	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	93667516	93667516	A	-	DEL	CCDC18	ENST00000557479	human	ensembl	74_37	+1	known	frame_shift_del	c.1120	p.V377fs	1.000	NULL	superfamily_Prefoldin,superfamily_tRNA-bd_arm	-	no_errors	CCDC18	HGNC	ENSG00000122483				75	0	0	68	11	13.9241
PIK3CD	0	genome.wustl.edu	37	1	9776037	9776037	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	1	9776037	9776037	C	-	DEL	PIK3CD	ENST00000536656	human	ensembl	74_37	+1	known	frame_shift_del	c.501	p.L169fs	1.000	NULL	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,pfam_PI3K_Ras-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CD	HGNC	ENSG00000171608				29	0	0	24	5	17.2414
CNNM1	0	genome.wustl.edu	37	10	101089318	101089318	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	10	101089318	101089318	G	-	DEL	CNNM1	ENST00000356713	human	ensembl	74_37	+1	known	frame_shift_del	c.174	p.G60fs	1.000	NULL	pfam_DUF21,pfam_CBS_dom	-	no_errors	CNNM1	HGNC	ENSG00000119946				14	0	0	11	3	21.4286
PAX2	0	genome.wustl.edu	37	10	102587324	102587324	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	10	102587324	102587324	C	-	DEL	PAX2	ENST00000428433	human	ensembl	74_37	+1	known	frame_shift_del	c.1202	p.R403fs	1.000	pfam_Pax2_C	pfam_Paired_dom,pfam_Pax2_C,superfamily_Homeodomain-like,smart_Paired_dom,pfscan_Paired_dom,prints_Paired_dom	-	no_errors	PAX2	HGNC	ENSG00000075891				128	0	0	115	16	12.2137
NOLC1	0	genome.wustl.edu	37	10	103919299	103919299	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	10	103919299	103919299	A	-	DEL	NOLC1	ENST00000405356	human	ensembl	74_37	+1	known	frame_shift_del	c.863	p.K290fs	0.998	NULL	pfam_SRP40_C,pfscan_LisH_dimerisation	-	no_errors	NOLC1	HGNC	ENSG00000166197				77	0	0	69	5	6.75676
ATRNL1	0	genome.wustl.edu	37	10	116930893	116930893	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	10	116930893	116930893	A	-	DEL	ATRNL1	ENST00000355044	human	ensembl	74_37	+1	known	frame_shift_del	c.1191	p.T399fs	1.000	pfam_Kelch_2	pfam_Kelch_1,pfam_Kelch_2,pfam_Plexin_repeat,pfam_CUB_dom,pfam_EGF_extracell,superfamily_C-type_lectin_fold,superfamily_CUB_dom,superfamily_Plexin-like_fold,smart_EG-like_dom,smart_CUB_dom,smart_Plexin-like_fold,smart_C-type_lectin,smart_EGF_laminin,pfscan_CUB_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_C-type_lectin	-	no_errors	ATRNL1	HGNC	ENSG00000107518				136	0	0	141	15	9.61538
UPF2	0	genome.wustl.edu	37	10	12071011	12071011	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	10	12071011	12071011	T	-	DEL	UPF2	ENST00000356352	human	ensembl	74_37	-1	known	frame_shift_del	c.878	p.N293fs	1.000	pfam_MIF4G-like_typ-3,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3	pfam_MIF4G-like_typ-3,pfam_Up-fram_suppressor-2,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3	-	no_errors	UPF2	HGNC	ENSG00000151461				79	0	0	69	5	6.75676
OAT	0	genome.wustl.edu	37	10	126091634	126091634	+	RNA	DEL	A	A	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	10	126091634	126091634	A	-	DEL	OAT	ENST00000471127	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	OAT	HGNC	ENSG00000065154				172	1	0.578035	158	30	15.9574
CCDC3	0	genome.wustl.edu	37	10	12940430	12940431	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	10	12940430	12940431	-	G	INS	CCDC3	ENST00000378825	human	ensembl	74_37	-1	known	frame_shift_ins	c.799_798	p.Y266fs	0.987:0.964	NULL	NULL	-	no_errors	CCDC3	HGNC	ENSG00000151468				47	0	0	41	7	14.5833
GLRX3	0	genome.wustl.edu	37	10	131958325	131958325	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	10	131958325	131958325	T	-	DEL	GLRX3	ENST00000331244	human	ensembl	74_37	+1	known	frame_shift_del	c.268	p.F91fs	1.000	pfam_Thioredoxin_domain,pfam_mRNA_splic_U5,pfam_Phosducin_thioredoxin-like_dom,superfamily_Thioredoxin-like_fold	pfam_Glutaredoxin,pfam_Thioredoxin_domain,pfam_mRNA_splic_U5,pfam_Phosducin_thioredoxin-like_dom,superfamily_Thioredoxin-like_fold,tigrfam_Monothiol_GRX-rel	-	no_errors	GLRX3	HGNC	ENSG00000108010				198	0	0	134	19	12.4183
PFKP	0	genome.wustl.edu	37	10	3149418	3149418	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	10	3149418	3149418	A	-	DEL	PFKP	ENST00000381125	human	ensembl	74_37	+1	known	frame_shift_del	c.787	p.R265fs	0.989	pfam_Phosphofructokinase_dom,superfamily_Phosphofructokinase_dom,pirsf_6-phosphofructokinase_euk,prints_Phosphofructokinase,tigrfam_6-phosphofructokinase_euk	pfam_Phosphofructokinase_dom,superfamily_Phosphofructokinase_dom,pirsf_6-phosphofructokinase_euk,prints_Phosphofructokinase,tigrfam_6-phosphofructokinase_euk	-	no_errors	PFKP	HGNC	ENSG00000067057				78	0	0	82	16	16.3265
C10orf68	0	genome.wustl.edu	37	10	33018277	33018277	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	10	33018277	33018277	A	-	DEL	C10orf68	ENST00000375025	human	ensembl	74_37	+1	known	frame_shift_del	c.718	p.K242fs	0.000	NULL	NULL	-	no_errors	C10orf68	HGNC	ENSG00000150076				63	0	0	55	7	11.2903
C10orf71	0	genome.wustl.edu	37	10	50530930	50530930	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	10	50530930	50530930	A	-	DEL	C10orf71	ENST00000374144	human	ensembl	74_37	+1	known	frame_shift_del	c.340	p.T115fs	0.942	NULL	NULL	-	no_errors	C10orf71	HGNC	ENSG00000177354				199	0	0	127	15	10.5634
PCDH15	0	genome.wustl.edu	37	10	55569132	55569132	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	10	55569132	55569132	T	-	DEL	PCDH15	ENST00000395445	human	ensembl	74_37	-1	novel	frame_shift_del	c.4678	p.R1560fs	0.677	NULL	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDH15	HGNC	ENSG00000150275				129	0	0	114	21	15.5556
ENSG00000232807	0	genome.wustl.edu	37	10	5979048	5979049	+	RNA	DEL	CT	CT	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	10	5979048	5979049	CT	-	DEL	ENSG00000232807	ENST00000397264	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.009:0.000	-	-	-	no_errors	RP11-536K7.3	Clone_based_vega_gene	ENSG00000232807				58	0	0	41	10	19.6078
HERC4	0	genome.wustl.edu	37	10	69716603	69716604	+	RNA	DEL	AA	AA	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	10	69716603	69716604	AA	-	DEL	HERC4	ENST00000480158	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	HERC4	HGNC	ENSG00000148634				53	0	0	38	8	17.3913
DNA2	0	genome.wustl.edu	37	10	70182521	70182521	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	10	70182521	70182521	A	-	DEL	DNA2	ENST00000399180	human	ensembl	74_37	-1	known	frame_shift_del	c.2593	p.S865fs	1.000	superfamily_P-loop_NTPase	pfam_DNA_replication_fac_Dna2_N,superfamily_P-loop_NTPase	-	no_errors	DNA2	HGNC	ENSG00000138346				48	0	0	33	12	26.6667
KAT6B	0	genome.wustl.edu	37	10	76741703	76741703	+	RNA	DEL	A	A	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	10	76741703	76741703	A	-	DEL	KAT6B	ENST00000490365	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.008	-	-	-	no_errors	KAT6B	HGNC	ENSG00000156650				48	0	0	43	10	18.8679
KIN	0	genome.wustl.edu	37	10	7820854	7820854	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	10	7820854	7820854	T	-	DEL	KIN	ENST00000379562	human	ensembl	74_37	-1	known	frame_shift_del	c.505	p.T169fs	1.000	pfam_DNA/RNA-bd_Kin17_cons_domain	pfam_DNA/RNA-bd_Kin17_cons_domain	-	no_errors	KIN	HGNC	ENSG00000151657				287	0	0	249	52	17.2757
ZMIZ1	0	genome.wustl.edu	37	10	81067245	81067245	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	10	81067245	81067245	C	-	DEL	ZMIZ1	ENST00000334512	human	ensembl	74_37	+1	known	frame_shift_del	c.2752	p.Q920fs	1.000	NULL	pfam_Znf_MIZ,pfscan_Znf_MIZ	-	no_errors	ZMIZ1	HGNC	ENSG00000108175				80	0	0	47	10	17.5439
SLC16A12	0	genome.wustl.edu	37	10	91203598	91203598	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	10	91203598	91203598	A	-	DEL	SLC16A12	ENST00000371790	human	ensembl	74_37	-1	known	frame_shift_del	c.219	p.F73fs	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A12	HGNC	ENSG00000152779				51	0	0	51	7	12.069
DLAT	0	genome.wustl.edu	37	11	111904183	111904183	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	11	111904183	111904183	A	-	DEL	DLAT	ENST00000280346	human	ensembl	74_37	+1	known	frame_shift_del	c.716	p.V242fs	1.000	pfam_Biotin_lipoyl,superfamily_Single_hybrid_motif,pfscan_Biotin_lipoyl,tigrfam_LAT1	pfam_2-oxoacid_DH_actylTfrase,pfam_Biotin_lipoyl,pfam_E3-bd,superfamily_Single_hybrid_motif,superfamily_E3-bd,pfscan_Biotin_lipoyl,tigrfam_LAT1	-	no_errors	DLAT	HGNC	ENSG00000150768				89	0	0	80	17	17.5258
CEP164	0	genome.wustl.edu	37	11	117222648	117222648	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	11	117222648	117222648	A	-	DEL	CEP164	ENST00000278935	human	ensembl	74_37	+1	known	frame_shift_del	c.337	p.K116fs	1.000	NULL	superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom	-	no_errors	CEP164	HGNC	ENSG00000110274				42	0	0	29	13	30.9524
DPAGT1	0	genome.wustl.edu	37	11	118969143	118969143	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	11	118969143	118969143	A	-	DEL	DPAGT1	ENST00000354202	human	ensembl	74_37	-1	known	frame_shift_del	c.698	p.F233fs	1.000	pfam_Glycosyl_transferase_4	pfam_Glycosyl_transferase_4	-	no_errors	DPAGT1	HGNC	ENSG00000172269				176	0	0	140	19	11.9497
PLEKHA7	0	genome.wustl.edu	37	11	16822525	16822525	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	11	16822525	16822525	A	-	DEL	PLEKHA7	ENST00000448080	human	ensembl	74_37	-1	known	frame_shift_del	c.2405	p.F802fs	0.999	NULL	pfam_Pleckstrin_homology,pfam_WW_dom,superfamily_WW_dom,smart_WW_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_WW_dom	-	no_errors	PLEKHA7	HGNC	ENSG00000166689				288	2	0.689655	237	34	12.5461
PIK3C2A	0	genome.wustl.edu	37	11	17190949	17190949	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	11	17190949	17190949	T	-	DEL	PIK3C2A	ENST00000265970	human	ensembl	74_37	-1	known	frame_shift_del	c.340	p.T114fs	0.984	NULL	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_PI3K_Ras-bd_dom,pfam_Phox,pfam_C2_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,superfamily_Phox,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,smart_Phox,pfscan_C2_dom,pfscan_Phox,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3C2A	HGNC	ENSG00000011405				168	0	0	159	9	5.35714
USH1C	0	genome.wustl.edu	37	11	17518325	17518326	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	11	17518325	17518326	-	G	INS	USH1C	ENST00000005226	human	ensembl	74_37	-1	known	frame_shift_ins	c.2526_2525	p.E844fs	1.000:1.000	superfamily_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	USH1C	HGNC	ENSG00000006611				85	0	0	70	10	12.5
SAAL1	0	genome.wustl.edu	37	11	18108472	18108473	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	11	18108472	18108473	-	A	INS	SAAL1	ENST00000524803	human	ensembl	74_37	-1	known	frame_shift_ins	c.983_982	p.S328fs	1.000:0.995	NULL	superfamily_ARM-type_fold	-	no_errors	SAAL1	HGNC	ENSG00000166788				95	0	0	67	20	22.9885
PTPN5	0	genome.wustl.edu	37	11	18751285	18751286	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	11	18751285	18751286	-	G	INS	PTPN5	ENST00000358540	human	ensembl	74_37	-1	known	frame_shift_ins	c.1410_1409	p.L471fs	0.951:1.000	pirsf_Tyr_Pase_rcpt_R/non-rcpt_5,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_KIM-con,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	pirsf_Tyr_Pase_rcpt_R/non-rcpt_5,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_KIM-con,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN5	HGNC	ENSG00000110786				108	0	0	84	13	13.4021
MRGPRX1	0	genome.wustl.edu	37	11	18955772	18955772	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	11	18955772	18955772	A	-	DEL	MRGPRX1	ENST00000302797	human	ensembl	74_37	-1	known	frame_shift_del	c.560	p.L187fs	0.237	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	MRGPRX1	HGNC	ENSG00000170255				68	0	0	58	15	20.5479
FANCF	0	genome.wustl.edu	37	11	22647044	22647044	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	11	22647044	22647044	C	-	DEL	FANCF	ENST00000327470	human	ensembl	74_37	-1	known	frame_shift_del	c.313	p.D105fs	0.000	NULL	NULL	-	no_errors	FANCF	HGNC	ENSG00000183161				242	0	0	168	14	7.69231
FAM160A2	0	genome.wustl.edu	37	11	6238994	6238994	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	11	6238994	6238994	C	-	DEL	FAM160A2	ENST00000265978	human	ensembl	74_37	-1	known	frame_shift_del	c.1864	p.E622fs	0.962	NULL	pfam_RetinoicA-induced_16-like	-	no_errors	FAM160A2	HGNC	ENSG00000051009				33	0	0	17	10	37.037
RASGRP2	0	genome.wustl.edu	37	11	64508388	64508388	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	11	64508388	64508388	C	-	DEL	RASGRP2	ENST00000377486	human	ensembl	74_37	-1	putative	frame_shift_del	c.403	p.A135fs	0.001	NULL	pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGRP2	HGNC	ENSG00000068831				63	0	0	56	5	8.19672
MALAT1	0	genome.wustl.edu	37	11	65270091	65270091	+	RNA	DEL	T	T	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	11	65270091	65270091	T	-	DEL	MALAT1	ENST00000534336	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.911	-	-	-	no_errors	MALAT1	HGNC	ENSG00000251562				72	0	0	44	12	21.4286
ENSG00000245156	0	genome.wustl.edu	37	11	66039142	66039143	+	RNA	INS	-	-	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	11	66039142	66039143	-	A	INS	ENSG00000245156	ENST00000501708	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001:0.020	-	-	-	no_errors	RP11-867G23.3	Clone_based_vega_gene	ENSG00000245156				14	0	0	13	4	23.5294
RIN1	0	genome.wustl.edu	37	11	66102472	66102472	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	11	66102472	66102472	G	-	DEL	RIN1	ENST00000311320	human	ensembl	74_37	-1	known	frame_shift_del	c.798	p.V267fs	0.002	NULL	pfam_VPS9,pfam_Ras-assoc,smart_SH2,smart_VPS9_subgr,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_SH2,pfscan_VPS9	-	no_errors	RIN1	HGNC	ENSG00000174791				69	0	0	42	8	16
DCHS1	0	genome.wustl.edu	37	11	6644914	6644914	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	11	6644914	6644914	G	-	DEL	DCHS1	ENST00000299441	human	ensembl	74_37	-1	known	frame_shift_del	c.7993	p.L2665fs	0.086	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	DCHS1	HGNC	ENSG00000166341				46	0	0	27	4	12.9032
TBC1D10C	0	genome.wustl.edu	37	11	67177175	67177175	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	11	67177175	67177175	C	-	DEL	TBC1D10C	ENST00000312390	human	ensembl	74_37	+1	known	frame_shift_del	c.1291	p.R433fs	0.049	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D10C	HGNC	ENSG00000175463				61	0	0	89	16	15.2381
CCDC83	0	genome.wustl.edu	37	11	85593704	85593704	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	11	85593704	85593704	A	-	DEL	CCDC83	ENST00000280245	human	ensembl	74_37	+1	known	frame_shift_del	c.329	p.N112fs	0.982	NULL	NULL	-	no_errors	CCDC83	HGNC	ENSG00000150676				74	0	0	53	8	13.1148
SYCP3	0	genome.wustl.edu	37	12	102122901	102122901	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	12	102122901	102122901	T	-	DEL	SYCP3	ENST00000266743	human	ensembl	74_37	-1	known	frame_shift_del	c.643	p.I215fs	0.988	NULL	pfam_Cor1/Xlr/Xmr	-	no_errors	SYCP3	HGNC	ENSG00000139351				58	0	0	47	11	18.9655
BTBD11	0	genome.wustl.edu	37	12	108011162	108011162	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	12	108011162	108011162	C	-	DEL	BTBD11	ENST00000280758	human	ensembl	74_37	+1	known	frame_shift_del	c.2180	p.Q729fs	1.000	superfamily_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_BTB_POZ,superfamily_BTB/POZ_fold,superfamily_Ankyrin_rpt-contain_dom,superfamily_Histone-fold,smart_Ankyrin_rpt,smart_BTB/POZ-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_BTB/POZ-like	-	no_errors	BTBD11	HGNC	ENSG00000151136				124	0	0	93	13	12.2642
ACACB	0	genome.wustl.edu	37	12	109577798	109577798	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	12	109577798	109577798	G	-	DEL	ACACB	ENST00000338432	human	ensembl	74_37	+1	known	frame_shift_del	c.588	p.A198fs	0.999	NULL	pfam_AcCoA_COase_cen,pfam_Carboxyl_trans,pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,superfamily_PreATP-grasp_dom,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_COA_CT_N,pfscan_COA_CT_C,pfscan_Biotin_lipoyl	-	no_errors	ACACB	HGNC	ENSG00000076555				95	0	0	99	13	11.6071
WSB2	0	genome.wustl.edu	37	12	118481123	118481123	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	12	118481123	118481123	C	-	DEL	WSB2	ENST00000315436	human	ensembl	74_37	-1	known	frame_shift_del	c.242	p.G81fs	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,pfam_SOCS_C,superfamily_WD40_repeat_dom,smart_WD40_repeat,smart_SOCS_C,pfscan_SOCS_C,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WSB2	HGNC	ENSG00000176871				217	0	0	145	36	19.8895
COQ5	0	genome.wustl.edu	37	12	120966756	120966758	+	In_Frame_Del	DEL	CTC	CTC	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	12	120966756	120966758	CTC	-	DEL	COQ5	ENST00000288532	human	ensembl	74_37	-1	known	in_frame_del	c.189_187	p.E63in_frame_del	1.000:1.000:1.000	pfam_UbiE/COQ5_MeTrFase	pfam_UbiE/COQ5_MeTrFase,pfam_Methyltransf_11,pfam_Methyltransf_12,tigrfam_UbiE/COQ5_MeTrFase	-	no_errors	COQ5	HGNC	ENSG00000110871				214	0	0	179	19	9.59596
DNAH10	0	genome.wustl.edu	37	12	124311423	124311423	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	12	124311423	124311423	A	-	DEL	DNAH10	ENST00000409039	human	ensembl	74_37	+1	known	frame_shift_del	c.4015	p.N1340fs	1.000	pfam_Dynein_heavy_dom-2,superfamily_PyrdxlP-dep_Trfase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_PyrdxlP-dep_Trfase,smart_AAA+_ATPase	-	no_errors	DNAH10	HGNC	ENSG00000197653				72	0	0	69	13	15.8537
NCOR2	0	genome.wustl.edu	37	12	124821593	124821593	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	12	124821593	124821593	G	-	DEL	NCOR2	ENST00000356219	human	ensembl	74_37	-1	known	frame_shift_del	c.5842	p.R1948fs	0.155	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR2	HGNC	ENSG00000196498				17	0	0	10	4	28.5714
NCOR2	0	genome.wustl.edu	37	12	124841250	124841251	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	12	124841250	124841251	-	G	INS	NCOR2	ENST00000356219	human	ensembl	74_37	-1	known	frame_shift_ins	c.3200_3199	p.R1067fs	0.404:0.395	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR2	HGNC	ENSG00000196498				29	0	0	19	2	9.52381
UBC	0	genome.wustl.edu	37	12	125396267	125396267	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	12	125396267	125396267	C	-	DEL	UBC	ENST00000339647	human	ensembl	74_37	-1	known	frame_shift_del	c.2051	p.G684fs	1.000	pfscan_Ubiquitin_supergroup	pfam_Ubiquitin_dom,pfam_Rad60/SUMO_like,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup,prints_Ubiquitin	-	no_errors	UBC	HGNC	ENSG00000150991				119	1	0.833333	107	30	21.8978
FAM60A	0	genome.wustl.edu	37	12	31448178	31448178	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	12	31448178	31448178	T	-	DEL	FAM60A	ENST00000337682	human	ensembl	74_37	-1	known	frame_shift_del	c.218	p.N73fs	1.000	NULL	NULL	-	no_errors	FAM60A	HGNC	ENSG00000139146				42	0	0	36	3	7.69231
LRRK2	0	genome.wustl.edu	37	12	40713870	40713870	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	12	40713870	40713870	A	-	DEL	LRRK2	ENST00000298910	human	ensembl	74_37	+1	known	frame_shift_del	c.4908	p.R1639fs	0.408	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_MIRO-like,pfam_Small_GTPase,pfam_Leu-rich_rpt,pfam_Small_GTPase_ARF/SAR,superfamily_Kinase-like_dom,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,superfamily_WD40_repeat_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Small_GTPase_Rab_type,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,prints_Small_GTPase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	LRRK2	HGNC	ENSG00000188906				146	0	0	127	25	16.4474
ARID2	0	genome.wustl.edu	37	12	46245449	46245449	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	12	46245449	46245449	T	-	DEL	ARID2	ENST00000334344	human	ensembl	74_37	+1	known	frame_shift_del	c.3543	p.F1182fs	1.000	NULL	pfam_ARID/BRIGHT_DNA-bd,pfam_DNA-bd_RFX,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID2	HGNC	ENSG00000189079				123	0	0	92	14	13.2075
KCNA6	0	genome.wustl.edu	37	12	4919970	4919970	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	12	4919970	4919970	G	-	DEL	KCNA6	ENST00000280684	human	ensembl	74_37	+1	known	frame_shift_del	c.763	p.G256fs	0.865	prints_K_chnl_volt-dep_Kv1.6	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.6,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA6	HGNC	ENSG00000151079				170	1	0.584795	155	25	13.8889
KRT75	0	genome.wustl.edu	37	12	52827889	52827889	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	12	52827889	52827889	C	-	DEL	KRT75	ENST00000252245	human	ensembl	74_37	-1	known	frame_shift_del	c.200	p.G67fs	0.126	NULL	pfam_IF,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT75	HGNC	ENSG00000170454				120	0	0	90	12	11.7647
TENC1	0	genome.wustl.edu	37	12	53453311	53453311	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	12	53453311	53453311	C	-	DEL	TENC1	ENST00000314276	human	ensembl	74_37	+1	known	frame_shift_del	c.1916	p.Q641fs	0.004	NULL	pfam_PTB,pfam_Tensin_phosphatase_C2-dom,pfam_SH2,superfamily_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_SH2,smart_PTB/PI_dom,pfscan_SH2,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TENC1	HGNC	ENSG00000111077				29	0	0	25	3	10.7143
SP7	0	genome.wustl.edu	37	12	53722074	53722075	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	12	53722074	53722075	-	G	INS	SP7	ENST00000303846	human	ensembl	74_37	-1	known	frame_shift_ins	c.1152_1151	p.P385fs	0.026:0.115	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SP7	HGNC	ENSG00000170374				41	0	0	40	9	18.3673
AMHR2	0	genome.wustl.edu	37	12	53824050	53824050	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	12	53824050	53824050	G	-	DEL	AMHR2	ENST00000257863	human	ensembl	74_37	+1	known	frame_shift_del	c.1409	p.W470fs	1.000	pirsf_Anti-muellerian_hrmn_rcpt_II,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Anti-muellerian_hrmn_rcpt_II,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	AMHR2	HGNC	ENSG00000135409				196	0	0	168	21	11.1111
OR6C4	0	genome.wustl.edu	37	12	55945453	55945454	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	12	55945453	55945454	-	G	INS	OR6C4	ENST00000394256	human	ensembl	74_37	+1	known	frame_shift_ins	c.443_444	p.F151fs	0.773:0.251	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6C4	HGNC	ENSG00000179626				247	0	0	215	42	16.3424
STAT2	0	genome.wustl.edu	37	12	56744034	56744034	+	RNA	DEL	A	A	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	12	56744034	56744034	A	-	DEL	STAT2	ENST00000557252	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.040	-	-	-	no_errors	STAT2	HGNC	ENSG00000170581				60	0	0	47	19	28.7879
MBD6	0	genome.wustl.edu	37	12	57920934	57920934	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	12	57920934	57920934	C	-	DEL	MBD6	ENST00000355673	human	ensembl	74_37	+1	known	frame_shift_del	c.2006	p.P671fs	1.000	NULL	superfamily_DNA-bd_dom,smart_Methyl_CpG_DNA-bd,pfscan_Methyl_CpG_DNA-bd	-	no_errors	MBD6	HGNC	ENSG00000166987				36	0	0	36	4	10
AVPR1A	0	genome.wustl.edu	37	12	63541343	63541343	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	12	63541343	63541343	A	-	DEL	AVPR1A	ENST00000299178	human	ensembl	74_37	-1	known	frame_shift_del	c.1053	p.F351fs	0.998	pfam_7TM_GPCR_serpentine_rcpt_Srv,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_DUF1856,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_Vprs_V1A_rcpt,prints_Vasoprsn_rcpt,prints_GPCR_Rhodpsn	-	no_errors	AVPR1A	HGNC	ENSG00000166148				132	0	0	118	14	10.6061
XPOT	0	genome.wustl.edu	37	12	64812755	64812755	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	12	64812755	64812755	T	-	DEL	XPOT	ENST00000332707	human	ensembl	74_37	+1	known	frame_shift_del	c.370	p.F126fs	1.000	pfam_Exportin-1/Importin-b-like,superfamily_ARM-type_fold	pfam_Exportin-1/Importin-b-like,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N	-	no_errors	XPOT	HGNC	ENSG00000184575				134	0	0	127	24	15.894
HELB	0	genome.wustl.edu	37	12	66704208	66704208	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	12	66704208	66704208	A	-	DEL	HELB	ENST00000247815	human	ensembl	74_37	+1	known	frame_shift_del	c.1500	p.A503fs	0.000	superfamily_P-loop_NTPase	superfamily_P-loop_NTPase	-	no_errors	HELB	HGNC	ENSG00000127311				109	0	0	89	11	11
E2F7	0	genome.wustl.edu	37	12	77419716	77419717	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	12	77419716	77419717	-	G	INS	E2F7	ENST00000322886	human	ensembl	74_37	-1	known	frame_shift_ins	c.2187_2186	p.T730fs	0.000:0.000	NULL	pfam_E2F_TDP	-	no_errors	E2F7	HGNC	ENSG00000165891				52	0	0	40	7	14.8936
EEA1	0	genome.wustl.edu	37	12	93213103	93213103	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	12	93213103	93213103	T	-	DEL	EEA1	ENST00000322349	human	ensembl	74_37	-1	known	frame_shift_del	c.1709	p.N570fs	1.000	NULL	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel,pfscan_Znf_C2H2	-	no_errors	EEA1	HGNC	ENSG00000102189				87	0	0	84	14	14.2857
TM9SF2	0	genome.wustl.edu	37	13	100181813	100181814	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	13	100181813	100181814	-	A	INS	TM9SF2	ENST00000376387	human	ensembl	74_37	+1	known	frame_shift_ins	c.426_427	p.S144fs	1.000:1.000	pfam_EMP70	pfam_EMP70	-	no_errors	TM9SF2	HGNC	ENSG00000125304				93	0	0	83	22	20.9524
UPF3A	0	genome.wustl.edu	37	13	115057211	115057211	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	13	115057211	115057211	A	-	DEL	UPF3A	ENST00000375299	human	ensembl	74_37	+1	known	frame_shift_del	c.790	p.E267fs	0.943	NULL	pfam_Nonsense_mediated_decay_UPF3	-	no_errors	UPF3A	HGNC	ENSG00000169062				28	0	0	26	6	18.75
ANKRD20A19P	0	genome.wustl.edu	37	13	24515468	24515468	+	RNA	DEL	T	T	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	13	24515468	24515468	T	-	DEL	ANKRD20A19P	ENST00000420143	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.055	-	-	-	no_errors	ANKRD20A19P	HGNC	ENSG00000196593				189	0	0	156	15	8.77193
WASF3	0	genome.wustl.edu	37	13	27255387	27255387	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	13	27255387	27255387	C	-	DEL	WASF3	ENST00000335327	human	ensembl	74_37	+1	known	frame_shift_del	c.913	p.P307fs	0.975	NULL	pfam_WH2_dom,smart_WH2_dom,pfscan_WH2_dom	-	no_errors	WASF3	HGNC	ENSG00000132970				114	1	0.869565	91	21	18.75
ZC3H13	0	genome.wustl.edu	37	13	46616336	46616337	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	13	46616336	46616337	-	G	INS	ZC3H13	ENST00000242848	human	ensembl	74_37	-1	known	frame_shift_ins	c.302_301	p.Q101fs	1.000:1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H13	HGNC	ENSG00000123200				195	0	0	177	31	14.9038
LRRC63	0	genome.wustl.edu	37	13	46844471	46844471	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	13	46844471	46844471	G	-	DEL	LRRC63	ENST00000446175	human	ensembl	74_37	+1	known	frame_shift_del	c.1553	p.A520fs	0.849	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC63	HGNC	ENSG00000173988				126	0	0	109	8	6.83761
SCEL	0	genome.wustl.edu	37	13	78178491	78178491	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	13	78178491	78178491	A	-	DEL	SCEL	ENST00000349847	human	ensembl	74_37	+1	known	frame_shift_del	c.1098	p.D369fs	0.997	NULL	smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	SCEL	HGNC	ENSG00000136155				105	0	0	114	18	13.6364
SLITRK1	0	genome.wustl.edu	37	13	84455508	84455509	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	13	84455508	84455509	-	T	INS	SLITRK1	ENST00000377084	human	ensembl	74_37	-1	known	frame_shift_ins	c.135_134	p.F47fs	1.000:1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK1	HGNC	ENSG00000178235				164	0	0	134	20	12.987
ABCC4	0	genome.wustl.edu	37	13	95735432	95735432	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	13	95735432	95735432	A	-	DEL	ABCC4	ENST00000376887	human	ensembl	74_37	-1	known	frame_shift_del	c.2648	p.L883fs	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC1_TM_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,prints_CysFib_conduc_TM	-	no_errors	ABCC4	HGNC	ENSG00000125257				104	0	0	90	14	13.4615
PPP2R5C	0	genome.wustl.edu	37	14	102378891	102378891	+	RNA	DEL	G	G	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	14	102378891	102378891	G	-	DEL	PPP2R5C	ENST00000556218	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PPP2R5C	HGNC	ENSG00000078304				39	0	0	34	7	17.0732
PPP1R13B	0	genome.wustl.edu	37	14	104208418	104208418	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	14	104208418	104208418	G	-	DEL	PPP1R13B	ENST00000202556	human	ensembl	74_37	-1	known	frame_shift_del	c.1531	p.Q511fs	0.045	NULL	pfam_Ankyrin_rpt,pfam_SH3_domain,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	PPP1R13B	HGNC	ENSG00000088808				209	0	0	181	12	6.21762
OR4L1	0	genome.wustl.edu	37	14	20528881	20528881	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	14	20528881	20528881	A	-	DEL	OR4L1	ENST00000315683	human	ensembl	74_37	+1	known	frame_shift_del	c.678	p.K228fs	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR4L1	HGNC	ENSG00000176246				219	0	0	178	31	14.8325
ARHGEF40	0	genome.wustl.edu	37	14	21546604	21546604	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	14	21546604	21546604	G	-	DEL	ARHGEF40	ENST00000298694	human	ensembl	74_37	+1	known	frame_shift_del	c.2203	p.A737fs	0.899	NULL	pfam_DH-domain,superfamily_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF40	HGNC	ENSG00000165801				120	0	0	114	8	6.55738
ARHGEF40	0	genome.wustl.edu	37	14	21556192	21556192	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	14	21556192	21556192	C	-	DEL	ARHGEF40	ENST00000298694	human	ensembl	74_37	+1	known	frame_shift_del	c.4453	p.H1487fs	0.081	NULL	pfam_DH-domain,superfamily_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF40	HGNC	ENSG00000165801				138	0	0	115	18	13.5338
ZNF219	0	genome.wustl.edu	37	14	21558706	21558707	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	14	21558706	21558707	-	C	INS	ZNF219	ENST00000360947	human	ensembl	74_37	-1	known	frame_shift_ins	c.2158_2157	p.Q719fs	0.315:0.012	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2,prints_Histamine_H3_rcpt	-	no_errors	ZNF219	HGNC	ENSG00000165804				43	0	0	52	7	11.8644
IRF9	0	genome.wustl.edu	37	14	24635084	24635084	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	14	24635084	24635084	C	-	DEL	IRF9	ENST00000396864	human	ensembl	74_37	+1	known	frame_shift_del	c.1020	p.P342fs	0.271	pfam_Interferon_reg_factor-3,superfamily_SMAD_FHA_domain	pfam_Interferon_reg_fact_DNA-bd_dom,pfam_Interferon_reg_factor-3,superfamily_SMAD_FHA_domain,smart_Interferon_reg_fact_DNA-bd_dom,prints_Interferon_reg_fact_DNA-bd_dom	-	no_errors	IRF9	HGNC	ENSG00000213928				57	0	0	53	11	17.1875
KIAA0391	0	genome.wustl.edu	37	14	35593160	35593160	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	14	35593160	35593160	A	-	DEL	KIAA0391	ENST00000534898	human	ensembl	74_37	+1	known	frame_shift_del	c.709	p.V239fs	0.945	NULL	NULL	-	no_errors	KIAA0391	HGNC	ENSG00000100890				60	0	0	39	7	15.2174
ENSG00000258843	0	genome.wustl.edu	37	14	51290059	51290059	+	RNA	DEL	A	A	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	14	51290059	51290059	A	-	DEL	ENSG00000258843	ENST00000555966	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	RP11-286O18.1	Clone_based_vega_gene	ENSG00000258843				45	0	0	31	6	16.2162
ARID4A	0	genome.wustl.edu	37	14	58831995	58831996	+	Frame_Shift_Ins	INS	-	-	AG			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	14	58831995	58831996	-	AG	INS	ARID4A	ENST00000355431	human	ensembl	74_37	+1	known	frame_shift_ins	c.3188_3189	p.E1067fs	0.993:0.988	NULL	pfam_RBB1NT,pfam_ARID/BRIGHT_DNA-bd,pfam_Tudor-knot,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Chromodomain-like,smart_Tudor,smart_ARID/BRIGHT_DNA-bd,smart_Chromo_domain/shadow,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID4A	HGNC	ENSG00000032219				91	0	0	86	6	6.52174
PCNXL4	0	genome.wustl.edu	37	14	60591389	60591389	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	14	60591389	60591389	A	-	DEL	PCNXL4	ENST00000404681	human	ensembl	74_37	+1	known	frame_shift_del	c.2500	p.V836fs	0.009	NULL	pfam_Pecanex	-	no_errors	PCNXL4	HGNC	ENSG00000126773				252	0	0	216	31	12.5506
ZBTB1	0	genome.wustl.edu	37	14	64989787	64989787	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	14	64989787	64989787	A	-	DEL	ZBTB1	ENST00000394712	human	ensembl	74_37	+1	known	frame_shift_del	c.1565	p.K524fs	0.222	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB1	HGNC	ENSG00000126804				185	1	0.537634	155	22	12.4294
ZFP36L1	0	genome.wustl.edu	37	14	69256455	69256455	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	14	69256455	69256455	C	-	DEL	ZFP36L1	ENST00000336440	human	ensembl	74_37	-1	known	frame_shift_del	c.812	p.G271fs	0.994	NULL	pfam_Tis11B_N,pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZFP36L1	HGNC	ENSG00000185650				189	0	0	149	31	17.2222
YLPM1	0	genome.wustl.edu	37	14	75230947	75230947	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	14	75230947	75230947	C	-	DEL	YLPM1	ENST00000325680	human	ensembl	74_37	+1	known	frame_shift_del	c.755	p.P254fs	0.006	NULL	superfamily_P-loop_NTPase	-	no_errors	YLPM1	HGNC	ENSG00000119596				81	0	0	80	12	13.0435
TUBGCP5	0	genome.wustl.edu	37	15	22863109	22863109	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	15	22863109	22863109	A	-	DEL	TUBGCP5	ENST00000283645	human	ensembl	74_37	+1	known	frame_shift_del	c.2130	p.D713fs	0.957	pfam_TUBGCP	pfam_TUBGCP	-	no_errors	TUBGCP5	HGNC	ENSG00000153575				132	0	0	103	18	14.876
MAGEL2	0	genome.wustl.edu	37	15	23890069	23890069	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	15	23890069	23890069	G	-	DEL	MAGEL2	ENST00000532292	human	ensembl	74_37	-1	known	frame_shift_del	c.1012	p.R338fs	0.000	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEL2	HGNC	ENSG00000254585				89	0	0	91	13	12.5
SNORD115-32	0	genome.wustl.edu	37	15	25474162	25474162	+	RNA	DEL	A	A	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	15	25474162	25474162	A	-	DEL	SNORD115-32	ENST00000364079	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.941	-	-	-	no_errors	SNORD115-32	HGNC	ENSG00000200949				449	0	0	378	59	13.5011
DISP2	0	genome.wustl.edu	37	15	40659686	40659686	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	15	40659686	40659686	C	-	DEL	DISP2	ENST00000267889	human	ensembl	74_37	+1	known	frame_shift_del	c.1373	p.W460fs	0.000	NULL	pfscan_SSD	-	no_errors	DISP2	HGNC	ENSG00000140323				333	0	0	281	47	14.3293
UBR1	0	genome.wustl.edu	37	15	43252854	43252855	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	15	43252854	43252855	-	T	INS	UBR1	ENST00000290650	human	ensembl	74_37	-1	known	frame_shift_ins	c.4746_4745	p.N1582fs	0.742:0.838	NULL	pfam_ClpS_core,pfam_Znf_N-recognin,superfamily_Ribosomal_L7/12_C/ClpS-like,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR1	HGNC	ENSG00000159459				28	0	0	28	4	12.5
MAP1A	0	genome.wustl.edu	37	15	43814941	43814941	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	15	43814941	43814941	A	-	DEL	MAP1A	ENST00000399453	human	ensembl	74_37	+1	known	frame_shift_del	c.1270	p.K425fs	1.000	NULL	NULL	-	no_errors	MAP1A	HGNC	ENSG00000166963				18	0	0	5	4	44.4444
MAP1A	0	genome.wustl.edu	37	15	43819858	43819858	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	15	43819858	43819858	C	-	DEL	MAP1A	ENST00000399453	human	ensembl	74_37	+1	known	frame_shift_del	c.6187	p.R2065fs	0.638	NULL	NULL	-	no_errors	MAP1A	HGNC	ENSG00000166963				52	0	0	48	7	12.7273
B2M	0	genome.wustl.edu	37	15	45003781	45003782	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	15	45003781	45003782	CT	-	DEL	B2M	ENST00000544417	human	ensembl	74_37	+1	known	frame_shift_del	c.37_38	p.L15fs	0.000:0.000	NULL	pfam_Ig_C1-set,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	B2M	HGNC	ENSG00000166710				123	0	0	83	13	13.5417
IL16	0	genome.wustl.edu	37	15	81592469	81592469	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	15	81592469	81592469	C	-	DEL	IL16	ENST00000302987	human	ensembl	74_37	+1	known	frame_shift_del	c.2802	p.P936fs	0.000	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,prints_IL-16	-	no_errors	IL16	HGNC	ENSG00000172349				87	0	0	62	17	21.519
ENSG00000261312	0	genome.wustl.edu	37	16	19718152	19718153	+	RNA	INS	-	-	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	16	19718152	19718153	-	A	INS	ENSG00000261312	ENST00000565916	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.300:0.126	-	-	-	no_errors	AC002550.5	Clone_based_vega_gene	ENSG00000261312				173	0	0	135	19	12.3377
LOC81691	0	genome.wustl.edu	37	16	20844363	20844363	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	16	20844363	20844363	T	-	DEL	LOC81691	ENST00000261377	human	ensembl	74_37	+1	known	frame_shift_del	c.1301	p.L436fs	0.996	NULL	pfam_Exonuclease_RNaseT/DNA_pol3,pfam_RRM_dom,superfamily_RNaseH-like_dom,smart_Exonuclease,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	AC004381.6	Clone_based_vega_gene	ENSG00000005189				112	0	0	96	14	12.7273
PALB2	0	genome.wustl.edu	37	16	23647028	23647028	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	16	23647028	23647028	T	-	DEL	PALB2	ENST00000261584	human	ensembl	74_37	-1	known	frame_shift_del	c.839	p.N280fs	0.001	NULL	superfamily_WD40_repeat_dom	-	no_errors	PALB2	HGNC	ENSG00000083093				170	0	0	104	19	15.4472
ZNF48	0	genome.wustl.edu	37	16	30409310	30409310	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	16	30409310	30409310	C	-	DEL	ZNF48	ENST00000320159	human	ensembl	74_37	+1	known	frame_shift_del	c.739	p.R249fs	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF48	HGNC	ENSG00000180035				66	0	0	70	11	13.5802
BCL7C	0	genome.wustl.edu	37	16	30899222	30899223	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	16	30899222	30899223	-	G	INS	BCL7C	ENST00000215115	human	ensembl	74_37	-1	known	frame_shift_ins	c.618_617	p.L207fs	1.000:1.000	NULL	pfam_BCL7	-	no_errors	BCL7C	HGNC	ENSG00000099385				281	0	0	226	47	17.2161
PRSS36	0	genome.wustl.edu	37	16	31151942	31151942	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	16	31151942	31151942	G	-	DEL	PRSS36	ENST00000268281	human	ensembl	74_37	-1	known	frame_shift_del	c.2038	p.L680fs	0.448	pirsf_Pept_S1A_polyserase-2,pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pirsf_Pept_S1A_polyserase-2,pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_Peptidase_S1	-	no_errors	PRSS36	HGNC	ENSG00000178226				25	0	0	29	8	21.6216
PPL	0	genome.wustl.edu	37	16	4944500	4944500	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	16	4944500	4944500	G	-	DEL	PPL	ENST00000345988	human	ensembl	74_37	-1	known	frame_shift_del	c.1362	p.T455fs	0.933	smart_Spectrin/alpha-actinin	pfam_Plectin_repeat,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	PPL	HGNC	ENSG00000118898				80	0	0	58	8	12.1212
NAGPA	0	genome.wustl.edu	37	16	5083678	5083679	+	Frame_Shift_Del	DEL	GC	GC	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	GC	GC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	16	5083678	5083679	GC	-	DEL	NAGPA	ENST00000312251	human	ensembl	74_37	-1	known	frame_shift_del	c.138_137	p.R46fs	0.004:0.541	NULL	pfam_DUF2233,pfscan_EG-like_dom	-	no_errors	NAGPA	HGNC	ENSG00000103174				37	0	0	30	3	9.09091
MT1JP	0	genome.wustl.edu	37	16	56670909	56670909	+	RNA	DEL	T	T	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	16	56670909	56670909	T	-	DEL	MT1JP	ENST00000563395	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MT1JP	HGNC	ENSG00000255986				42	0	0	39	3	7.14286
CDH11	0	genome.wustl.edu	37	16	65026836	65026836	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	16	65026836	65026836	A	-	DEL	CDH11	ENST00000268603	human	ensembl	74_37	-1	known	frame_shift_del	c.625	p.S209fs	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH11	HGNC	ENSG00000140937				84	0	0	52	7	11.8644
CDH16	0	genome.wustl.edu	37	16	66945906	66945906	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	16	66945906	66945906	G	-	DEL	CDH16	ENST00000299752	human	ensembl	74_37	-1	known	frame_shift_del	c.1686	p.K563fs	0.250	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH16	HGNC	ENSG00000166589				137	0	0	108	18	14.2857
HSF4	0	genome.wustl.edu	37	16	67201666	67201666	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	16	67201666	67201666	G	-	DEL	HSF4	ENST00000264009	human	ensembl	74_37	+1	known	frame_shift_del	c.898	p.D302fs	1.000	NULL	pfam_HSF_DNA-bd,smart_HSF_DNA-bd,prints_HSF_DNA-bd	-	no_errors	HSF4	HGNC	ENSG00000102878				23	0	0	15	5	25
TMED6	0	genome.wustl.edu	37	16	69377458	69377458	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	16	69377458	69377458	A	-	DEL	TMED6	ENST00000288025	human	ensembl	74_37	-1	known	frame_shift_del	c.575	p.F192fs	1.000	pfam_GOLD	pfam_GOLD,superfamily_GOLD,pfscan_GOLD	-	no_errors	TMED6	HGNC	ENSG00000157315				172	1	0.578035	131	29	18.125
AP1G1	0	genome.wustl.edu	37	16	71803440	71803440	+	Splice_Site	DEL	A	A	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	16	71803440	71803440	A	-	DEL	AP1G1	ENST00000423132	human	ensembl	74_37	-1	known	splice_site_del	c.643-1	e6-1	0.996	-	-	-	no_errors	AP1G1	HGNC	ENSG00000166747				41	0	0	39	9	18.75
MPRIP	0	genome.wustl.edu	37	17	17046886	17046886	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	17	17046886	17046886	C	-	DEL	MPRIP	ENST00000395811	human	ensembl	74_37	+1	known	frame_shift_del	c.1052	p.P353fs	0.999	NULL	pfam_Pleckstrin_homology,superfamily_Ferritin-like_SF,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	MPRIP	HGNC	ENSG00000133030				38	0	0	30	4	11.7647
MYO15A	0	genome.wustl.edu	37	17	18023293	18023293	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	17	18023293	18023293	C	-	DEL	MYO15A	ENST00000205890	human	ensembl	74_37	+1	known	frame_shift_del	c.1179	p.E396fs	0.850	NULL	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_SH3_2,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_SH3_domain,smart_Band_41_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO15A	HGNC	ENSG00000091536				104	0	0	104	11	9.56522
MIEF2	0	genome.wustl.edu	37	17	18167276	18167277	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	17	18167276	18167277	-	G	INS	MIEF2	ENST00000323019	human	ensembl	74_37	+1	known	frame_shift_ins	c.563_564	p.A190fs	0.513:0.000	NULL	NULL	-	no_errors	MIEF2	HGNC	ENSG00000177427				22	0	0	23	2	8
TAF15	0	genome.wustl.edu	37	17	34171885	34171886	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	17	34171885	34171886	-	G	INS	TAF15	ENST00000588240	human	ensembl	74_37	+1	known	frame_shift_ins	c.1582_1583	p.Y531fs	1.000:1.000	NULL	pfam_RRM_dom,pfam_Znf_RanBP2,smart_RRM_dom,smart_Znf_RanBP2,pfscan_Znf_RanBP2,pfscan_RRM_dom	-	no_errors	TAF15	HGNC	ENSG00000172660				114	0	0	99	17	14.6552
TADA2A	0	genome.wustl.edu	37	17	35837046	35837047	+	Frame_Shift_Del	DEL	TA	TA	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	TA	TA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	17	35837046	35837047	TA	-	DEL	TADA2A	ENST00000225396	human	ensembl	74_37	+1	known	frame_shift_del	c.1291_1292	p.Y431fs	1.000:1.000	pfam_SWIRM,superfamily_Homeodomain-like,pirsf_Transcriptional_adaptor_2,pfscan_SWIRM	pfam_SWIRM,pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pirsf_Transcriptional_adaptor_2,pfscan_SWIRM,pfscan_Myb-like_dom	-	no_errors	TADA2A	HGNC	ENSG00000108264				263	0	0	256	40	13.5135
TOP2A	0	genome.wustl.edu	37	17	38546381	38546381	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	17	38546381	38546381	T	-	DEL	TOP2A	ENST00000423485	human	ensembl	74_37	-1	known	frame_shift_del	c.4303	p.R1435fs	0.997	pfam_DTHCT	pfam_Topo_IIA_A/C,pfam_Topo_IIA_bsu_dom2,pfam_DTHCT,pfam_HATPase_ATP-bd,superfamily_Topo_IIA_like_dom,superfamily_HATPase_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,smart_Topo_IIA,smart_Topo_IIA_A/C,prints_TopoII_euk,prints_Topo_IIA,prints_Transcrpt_fac_NFYB/HAP3	-	no_errors	TOP2A	HGNC	ENSG00000131747				42	0	0	41	6	12.766
KRT34	0	genome.wustl.edu	37	17	39538427	39538427	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	17	39538427	39538427	G	-	DEL	KRT34	ENST00000394001	human	ensembl	74_37	-1	known	frame_shift_del	c.198	p.S67fs	0.999	NULL	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT34	HGNC	ENSG00000131737				189	1	0.526316	194	17	8.05687
BECN1	0	genome.wustl.edu	37	17	40970673	40970675	+	In_Frame_Del	DEL	ATG	ATG	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	ATG	ATG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	17	40970673	40970675	ATG	-	DEL	BECN1	ENST00000361523	human	ensembl	74_37	-1	known	in_frame_del	c.377_375	p.I125in_frame_del	1.000:1.000:1.000	pfam_Beclin_fam	pfam_Beclin_fam,superfamily_Translin	-	no_errors	BECN1	HGNC	ENSG00000126581				82	0	0	58	6	9.375
GPATCH8	0	genome.wustl.edu	37	17	42477205	42477207	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	17	42477205	42477207	CTT	-	DEL	GPATCH8	ENST00000591680	human	ensembl	74_37	-1	known	in_frame_del	c.2240_2238	p.R749in_frame_del	0.006:0.003:0.002	NULL	pfam_G_patch_dom,pfam_Znf_C2H2_jaz,smart_G_patch_dom,pfscan_Znf_C2H2,pfscan_G_patch_dom	-	no_errors	GPATCH8	HGNC	ENSG00000186566				101	0	0	66	14	17.5
CAMTA2	0	genome.wustl.edu	37	17	4875738	4875738	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	17	4875738	4875738	G	-	DEL	CAMTA2	ENST00000414043	human	ensembl	74_37	-1	known	frame_shift_del	c.2666	p.P889fs	1.000	NULL	pfam_CG-1_dom,pfam_IPT,pfam_IQ_motif_EF-hand-BS,superfamily_Ig_E-set,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	CAMTA2	HGNC	ENSG00000108509				42	0	0	30	4	11.7647
CAMTA2	0	genome.wustl.edu	37	17	4889569	4889569	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	17	4889569	4889569	G	-	DEL	CAMTA2	ENST00000414043	human	ensembl	74_37	-1	known	frame_shift_del	c.18	p.S7fs	1.000	NULL	pfam_CG-1_dom,pfam_IPT,pfam_IQ_motif_EF-hand-BS,superfamily_Ig_E-set,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	CAMTA2	HGNC	ENSG00000108509				34	0	0	21	3	12.5
RNF43	0	genome.wustl.edu	37	17	56435161	56435161	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	17	56435161	56435161	C	-	DEL	RNF43	ENST00000407977	human	ensembl	74_37	-1	known	frame_shift_del	c.1976	p.G659fs	0.900	NULL	pfam_Znf_C3HC4_RING-type,superfamily_PAS,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF43	HGNC	ENSG00000108375				232	1	0.429185	192	30	13.5135
RNF43	0	genome.wustl.edu	37	17	56435205	56435205	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	17	56435205	56435205	T	-	DEL	RNF43	ENST00000407977	human	ensembl	74_37	-1	known	frame_shift_del	c.1932	p.K644fs	1.000	NULL	pfam_Znf_C3HC4_RING-type,superfamily_PAS,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF43	HGNC	ENSG00000108375				231	0	0	219	12	5.19481
TEX14	0	genome.wustl.edu	37	17	56663315	56663316	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	17	56663315	56663316	-	G	INS	TEX14	ENST00000240361	human	ensembl	74_37	-1	known	frame_shift_ins	c.2935_2934	p.I978fs	0.000:0.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Prot_kinase_dom	-	no_errors	TEX14	HGNC	ENSG00000121101				224	0	0	173	31	15.1961
TBX2	0	genome.wustl.edu	37	17	59479233	59479234	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	17	59479233	59479234	-	G	INS	TBX2	ENST00000240328	human	ensembl	74_37	+1	novel	frame_shift_ins	c.584_585	p.E197fs	1.000:0.000	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	pfam_TF_T-box,pfam_TBX,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box,prints_TF_Brachyury	-	no_errors	TBX2	HGNC	ENSG00000121068				80	0	0	59	8	11.9403
TEX2	0	genome.wustl.edu	37	17	62265566	62265566	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	17	62265566	62265566	G	-	DEL	TEX2	ENST00000258991	human	ensembl	74_37	-1	known	frame_shift_del	c.2407	p.L803fs	0.957	NULL	pfam_DUF2404	-	no_errors	TEX2	HGNC	ENSG00000136478				122	0	0	109	10	8.40336
ABCA10	0	genome.wustl.edu	37	17	67218780	67218780	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	17	67218780	67218780	T	-	DEL	ABCA10	ENST00000269081	human	ensembl	74_37	-1	known	frame_shift_del	c.93	p.K31fs	0.000	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA10	HGNC	ENSG00000154263				131	0	0	102	17	14.2857
ENSG00000272884	0	genome.wustl.edu	37	17	7348740	7348741	+	RNA	INS	-	-	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	17	7348740	7348741	-	G	INS	ENSG00000272884	ENST00000575331	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.001	-	-	-	no_errors	RP11-104H15.10	Clone_based_vega_gene	ENSG00000272884				40	0	0	36	6	14.2857
TNRC6C	0	genome.wustl.edu	37	17	76046980	76046980	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	17	76046980	76046980	A	-	DEL	TNRC6C	ENST00000335749	human	ensembl	74_37	+1	known	frame_shift_del	c.1837	p.N615fs	0.960	NULL	pfam_Argonaute_hook_dom,pfam_UBA/Ts_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	TNRC6C	HGNC	ENSG00000078687				159	1	0.625	130	29	18.239
KDM6B	0	genome.wustl.edu	37	17	7751561	7751561	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	17	7751561	7751561	C	-	DEL	KDM6B	ENST00000254846	human	ensembl	74_37	+1	known	frame_shift_del	c.1955	p.Q654fs	1.000	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	KDM6B	HGNC	ENSG00000132510				71	0	0	50	12	19.3548
SCARNA21	0	genome.wustl.edu	37	17	7809454	7809454	+	RNA	DEL	G	G	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	17	7809454	7809454	G	-	DEL	SCARNA21	ENST00000517026	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SCARNA21	HGNC	ENSG00000252835				80	0	0	70	8	10.2564
ABR	0	genome.wustl.edu	37	17	970397	970397	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	17	970397	970397	G	-	DEL	ABR	ENST00000302538	human	ensembl	74_37	-1	known	frame_shift_del	c.1102	p.Q368fs	0.996	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_RhoGAP_dom,pfam_DH-domain,pfam_Pleckstrin_homology,pfam_C2_dom,superfamily_Rho_GTPase_activation_prot,superfamily_DH-domain,superfamily_C2_dom,smart_DH-domain,smart_Pleckstrin_homology,smart_C2_dom,smart_RhoGAP_dom,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom,pfscan_DH-domain	-	no_errors	ABR	HGNC	ENSG00000159842				58	0	0	39	6	13.3333
RBBP8	0	genome.wustl.edu	37	18	20572853	20572853	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	18	20572853	20572853	A	-	DEL	RBBP8	ENST00000327155	human	ensembl	74_37	+1	known	frame_shift_del	c.1063	p.K357fs	0.002	NULL	pfam_CtIP_N,pfam_DNA-repair_Sae2/CtIP	-	no_errors	RBBP8	HGNC	ENSG00000101773				104	1	0.952381	91	18	16.5138
NPC1	0	genome.wustl.edu	37	18	21118569	21118569	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	18	21118569	21118569	C	-	DEL	NPC1	ENST00000269228	human	ensembl	74_37	-1	known	frame_shift_del	c.2978	p.G993fs	0.004	tigrfam_NP_C_type	pfam_Patched,pfam_MMPL_dom,pfscan_SSD,tigrfam_NP_C_type	-	no_errors	NPC1	HGNC	ENSG00000141458				236	0	0	190	28	12.844
DSG4	0	genome.wustl.edu	37	18	28989503	28989505	+	In_Frame_Del	DEL	AGA	AGA	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	18	28989503	28989505	AGA	-	DEL	DSG4	ENST00000359747	human	ensembl	74_37	+1	known	in_frame_del	c.2022_2024	p.E675in_frame_del	0.864:1.000:1.000	NULL	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Desmoglein,prints_Desmosomal_cadherin	-	no_errors	DSG4	HGNC	ENSG00000175065				174	0	0	122	24	16.4384
ENSG00000252258	0	genome.wustl.edu	37	18	3025533	3025533	+	RNA	DEL	A	A	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	18	3025533	3025533	A	-	DEL	ENSG00000252258	ENST00000516449	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.000	-	-	-	no_errors	SNORA70	RFAM	ENSG00000252258				29	0	0	14	4	22.2222
DTNA	0	genome.wustl.edu	37	18	32395860	32395860	+	RNA	DEL	T	T	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	18	32395860	32395860	T	-	DEL	DTNA	ENST00000592114	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.029	-	-	-	no_errors	DTNA	HGNC	ENSG00000134769				143	0	0	121	17	12.3188
MOCOS	0	genome.wustl.edu	37	18	33836815	33836815	+	RNA	DEL	T	T	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	18	33836815	33836815	T	-	DEL	MOCOS	ENST00000588132	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MOCOS	HGNC	ENSG00000075643				30	0	0	23	9	28.125
WDR7	0	genome.wustl.edu	37	18	54358513	54358513	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	18	54358513	54358513	G	-	DEL	WDR7	ENST00000254442	human	ensembl	74_37	+1	known	frame_shift_del	c.784	p.D264fs	1.000	superfamily_Quinonprotein_ADH-like_supfam	pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like_supfam,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR7	HGNC	ENSG00000091157				165	0	0	127	18	12.4138
ALPK2	0	genome.wustl.edu	37	18	56246440	56246440	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	18	56246440	56246440	T	-	DEL	ALPK2	ENST00000361673	human	ensembl	74_37	-1	known	frame_shift_del	c.1568	p.K523fs	0.000	NULL	pfam_MHCK_EF2_kinase,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase,pfscan_Ig-like_dom	-	no_errors	ALPK2	HGNC	ENSG00000198796				438	0	0	413	52	11.1828
SERPINB10	0	genome.wustl.edu	37	18	61584738	61584739	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	18	61584738	61584739	-	A	INS	SERPINB10	ENST00000238508	human	ensembl	74_37	+1	known	frame_shift_ins	c.217_218	p.R76fs	0.991:0.998	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINB10	HGNC	ENSG00000242550				23	0	0	25	2	7.40741
ADNP2	0	genome.wustl.edu	37	18	77894261	77894261	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	18	77894261	77894261	C	-	DEL	ADNP2	ENST00000262198	human	ensembl	74_37	+1	known	frame_shift_del	c.965	p.P324fs	0.000	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ADNP2	HGNC	ENSG00000101544				126	0	0	78	16	17.0213
ZNF433	0	genome.wustl.edu	37	19	12128744	12128744	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	19	12128744	12128744	T	-	DEL	ZNF433	ENST00000344980	human	ensembl	74_37	-1	known	frame_shift_del	c.147	p.K49fs	0.040	superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF433	HGNC	ENSG00000197647				41	0	0	35	4	10.2564
CACNA1A	0	genome.wustl.edu	37	19	13414640	13414640	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	19	13414640	13414640	C	-	DEL	CACNA1A	ENST00000360228	human	ensembl	74_37	-1	known	frame_shift_del	c.2045	p.G682fs	1.000	pfam_Ion_trans_dom,pfam_PKD1_2_channel	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_P/Q_a1su	-	no_errors	CACNA1A	HGNC	ENSG00000141837				282	0	0	239	32	11.8081
CPAMD8	0	genome.wustl.edu	37	19	17081703	17081703	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	19	17081703	17081703	G	-	DEL	CPAMD8	ENST00000443236	human	ensembl	74_37	-1	known	frame_shift_del	c.2352	p.R785fs	0.962	NULL	pfam_A2M_comp,pfam_A2M_N_2,pfam_Methyltransf_FA,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_Kazal_dom,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd,smart_Kazal_dom	-	no_errors	CPAMD8	HGNC	ENSG00000160111				54	0	0	34	5	12.8205
ZNF43	0	genome.wustl.edu	37	19	21992087	21992087	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	19	21992087	21992087	T	-	DEL	ZNF43	ENST00000354959	human	ensembl	74_37	-1	known	frame_shift_del	c.752	p.N251fs	0.932	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF43	HGNC	ENSG00000198521				70	0	0	53	9	14.5161
LRFN3	0	genome.wustl.edu	37	19	36431074	36431074	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	19	36431074	36431074	C	-	DEL	LRFN3	ENST00000246529	human	ensembl	74_37	+1	known	frame_shift_del	c.747	p.L251fs	1.000	smart_Cys-rich_flank_reg_C	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	LRFN3	HGNC	ENSG00000126243				108	0	0	82	6	6.81818
ZNF569	0	genome.wustl.edu	37	19	37905171	37905171	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	19	37905171	37905171	A	-	DEL	ZNF569	ENST00000316950	human	ensembl	74_37	-1	known	frame_shift_del	c.389	p.F130fs	0.001	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF569	HGNC	ENSG00000196437				82	0	0	81	15	15.625
DYRK1B	0	genome.wustl.edu	37	19	40320999	40320999	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	19	40320999	40320999	G	-	DEL	DYRK1B	ENST00000601972	human	ensembl	74_37	-1	putative	frame_shift_del	c.388	p.H130fs	0.002	NULL	superfamily_Kinase-like_dom	-	no_errors	DYRK1B	HGNC	ENSG00000105204				72	0	0	55	11	16.6667
TGFB1	0	genome.wustl.edu	37	19	41836966	41836967	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	19	41836966	41836967	-	T	INS	TGFB1	ENST00000221930	human	ensembl	74_37	-1	known	frame_shift_ins	c.1164_1163	p.C389fs	1.000:1.000	pfam_TGF-b_C,smart_TGF-b_C,pirsf_TGF-beta	pfam_TGF-b_N,pfam_TGF-b_C,smart_TGF-b_C,pirsf_TGF-beta,prints_TGFb1,prints_TGF-beta	-	no_errors	TGFB1	HGNC	ENSG00000105329				12	0	0	10	5	33.3333
GRIK5	0	genome.wustl.edu	37	19	42507742	42507742	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	19	42507742	42507742	C	-	DEL	GRIK5	ENST00000301218	human	ensembl	74_37	-1	known	frame_shift_del	c.2357	p.G786fs	1.000	pfam_Iontro_glu_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK5	HGNC	ENSG00000105737				68	0	0	65	8	10.9589
CIC	0	genome.wustl.edu	37	19	42796882	42796883	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	19	42796882	42796883	-	C	INS	CIC	ENST00000575354	human	ensembl	74_37	+1	known	frame_shift_ins	c.3340_3341	p.S1117fs	1.000:0.993	NULL	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	CIC	HGNC	ENSG00000079432				101	0	0	88	12	12
DHX34	0	genome.wustl.edu	37	19	47883158	47883160	+	In_Frame_Del	DEL	GGA	GGA	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	GGA	GGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	19	47883158	47883160	GGA	-	DEL	DHX34	ENST00000328771	human	ensembl	74_37	+1	known	in_frame_del	c.2898_2900	p.E970in_frame_del	0.000:0.005:0.004	NULL	pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX34	HGNC	ENSG00000134815				73	0	0	62	10	13.8889
EPN1	0	genome.wustl.edu	37	19	56203184	56203184	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	19	56203184	56203184	G	-	DEL	EPN1	ENST00000411543	human	ensembl	74_37	+1	known	frame_shift_del	c.1085	p.G364fs	1.000	NULL	pfam_Epsin_dom_N,pfam_ANTH_dom,superfamily_ENTH_VHS,smart_Epsin-like_N,smart_Ubiquitin-int_motif,pfscan_Epsin-like_N,pfscan_Ubiquitin-int_motif	-	no_errors	EPN1	HGNC	ENSG00000063245				148	0	0	124	11	8.14815
DENND1C	0	genome.wustl.edu	37	19	6477251	6477251	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	19	6477251	6477251	G	-	DEL	DENND1C	ENST00000381480	human	ensembl	74_37	-1	known	frame_shift_del	c.491	p.P164fs	0.983	pfam_DENN_dom,smart_DENN_dom,pfscan_DENN_dom	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND1C	HGNC	ENSG00000205744				53	0	0	46	9	16.3636
MUC16	0	genome.wustl.edu	37	19	9060188	9060189	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	19	9060188	9060189	-	G	INS	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	frame_shift_ins	c.27258_27257	p.G9087fs	0.000:0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				223	0	0	207	22	9.60699
MUC16	0	genome.wustl.edu	37	19	9083008	9083008	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	19	9083008	9083008	T	-	DEL	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	frame_shift_del	c.8807	p.N2936fs	0.007	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				133	0	0	134	16	10.6667
EPB41L5	0	genome.wustl.edu	37	2	120836150	120836150	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	120836150	120836150	T	-	DEL	EPB41L5	ENST00000263713	human	ensembl	74_37	+1	known	frame_shift_del	c.796	p.W268fs	1.000	pfam_FERM_PH-like_C,pfscan_FERM_domain	pfam_FERM_central,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	EPB41L5	HGNC	ENSG00000115109				63	0	0	60	9	13.0435
ENSG00000231731	0	genome.wustl.edu	37	2	128263364	128263366	+	RNA	DEL	AAA	AAA	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	AAA	AAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	128263364	128263366	AAA	-	DEL	ENSG00000231731	ENST00000599001	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.233:0.319:0.309	-	-	-	no_errors	AC010976.2	Clone_based_vega_gene	ENSG00000231731				40	0	0	25	7	21.875
AMER3	0	genome.wustl.edu	37	2	131521307	131521308	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	131521307	131521308	-	G	INS	AMER3	ENST00000321420	human	ensembl	74_37	+1	known	frame_shift_ins	c.1662_1663	p.A556fs	0.000:0.000	NULL	pfam_Uncharacterised_FAM123	-	no_errors	AMER3	HGNC	ENSG00000178171				31	0	0	22	3	12
ACVR2A	0	genome.wustl.edu	37	2	148683686	148683686	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	148683686	148683686	A	-	DEL	ACVR2A	ENST00000241416	human	ensembl	74_37	+1	known	frame_shift_del	c.1303	p.K437fs	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_TGFB_receptor	-	no_errors	ACVR2A	HGNC	ENSG00000121989				119	0	0	89	32	26.4463
TPO	0	genome.wustl.edu	37	2	1507748	1507748	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	1507748	1507748	C	-	DEL	TPO	ENST00000329066	human	ensembl	74_37	+1	known	frame_shift_del	c.2415	p.C808fs	0.002	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_Haem_peroxidase_animal,pfam_EGF-like_Ca-bd_dom,superfamily_Haem_peroxidase,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Sushi_SCR_CCP,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	-	no_errors	TPO	HGNC	ENSG00000115705				82	0	0	53	13	19.697
MARCH7	0	genome.wustl.edu	37	2	160604680	160604680	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	160604680	160604680	T	-	DEL	MARCH7	ENST00000259050	human	ensembl	74_37	+1	known	frame_shift_del	c.879	p.S296fs	0.910	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH	-	no_errors	MARCH7	HGNC	ENSG00000136536				81	0	0	64	17	20.9877
IFIH1	0	genome.wustl.edu	37	2	163134716	163134716	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	163134716	163134716	T	-	DEL	IFIH1	ENST00000263642	human	ensembl	74_37	-1	known	frame_shift_del	c.1764	p.A589fs	1.000	superfamily_P-loop_NTPase,superfamily_ARM-type_fold	pfam_RIG-I_C-RD,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_CARD,superfamily_P-loop_NTPase,superfamily_DEATH-like_dom,superfamily_ARM-type_fold,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	IFIH1	HGNC	ENSG00000115267				76	0	0	63	15	19.2308
HOXD8	0	genome.wustl.edu	37	2	176995458	176995458	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	176995458	176995458	C	-	DEL	HOXD8	ENST00000313173	human	ensembl	74_37	+1	known	frame_shift_del	c.364	p.C124fs	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,prints_Homeobox_metazoa,pfscan_Homeobox_dom	-	no_errors	HOXD8	HGNC	ENSG00000175879				222	0	0	167	32	16.0804
COL5A2	0	genome.wustl.edu	37	2	189929324	189929324	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	189929324	189929324	C	-	DEL	COL5A2	ENST00000374866	human	ensembl	74_37	-1	known	frame_shift_del	c.1675	p.D559fs	0.998	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_VWF_C,superfamily_Fibrinogen_a/b/g_C_dom,smart_VWF_C,smart_Fib_collagen_C,pfscan_VWF_C	-	no_errors	COL5A2	HGNC	ENSG00000204262				121	0	0	88	15	14.5631
MYO1B	0	genome.wustl.edu	37	2	192257904	192257904	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	192257904	192257904	A	-	DEL	MYO1B	ENST00000304164	human	ensembl	74_37	+1	known	frame_shift_del	c.2182	p.S730fs	0.955	superfamily_P-loop_NTPase,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO1B	HGNC	ENSG00000128641				52	0	0	59	8	11.9403
TMEFF2	0	genome.wustl.edu	37	2	192818525	192818525	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	192818525	192818525	T	-	DEL	TMEFF2	ENST00000272771	human	ensembl	74_37	-1	known	frame_shift_del	c.908	p.K303fs	1.000	NULL	pfam_Kazal_dom,smart_Kazal_dom,pfscan_EG-like_dom	-	no_errors	TMEFF2	HGNC	ENSG00000144339				95	0	0	73	11	13.0952
CCDC150	0	genome.wustl.edu	37	2	197584401	197584401	+	RNA	DEL	T	T	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	197584401	197584401	T	-	DEL	CCDC150	ENST00000461825	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.003	-	-	-	no_errors	CCDC150	HGNC	ENSG00000144395				28	0	0	24	4	14.2857
CCDC150	0	genome.wustl.edu	37	2	197584490	197584490	+	RNA	DEL	A	A	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	197584490	197584490	A	-	DEL	CCDC150	ENST00000461825	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	CCDC150	HGNC	ENSG00000144395				8	0	0	5	3	37.5
SF3B1	0	genome.wustl.edu	37	2	198265662	198265663	+	Splice_Site	INS	-	-	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	198265662	198265663	-	A	INS	SF3B1	ENST00000335508	human	ensembl	74_37	-1	known	splice_site_ins	c.2497-3_2497-2	e18-2	1.000:0.736	-	-	-	no_errors	SF3B1	HGNC	ENSG00000115524				51	0	0	49	8	14.0351
CFLAR	0	genome.wustl.edu	37	2	202005127	202005128	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	202005127	202005128	-	A	INS	CFLAR	ENST00000309955	human	ensembl	74_37	+1	known	frame_shift_ins	c.571_572	p.S193fs	0.034:0.052	NULL	pfam_DED,pfam_Pept_C14_caspase,superfamily_DEATH-like_dom,smart_DED,smart_Pept_C14A_p45_core,pfscan_DED,pfscan_Pept_C14_ICE_p20	-	no_errors	CFLAR	HGNC	ENSG00000003402				150	0	0	131	20	13.245
BMPR2	0	genome.wustl.edu	37	2	203420130	203420130	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	203420130	203420130	A	-	DEL	BMPR2	ENST00000374580	human	ensembl	74_37	+1	known	frame_shift_del	c.1742	p.N583fs	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	BMPR2	HGNC	ENSG00000204217				85	0	0	68	11	13.9241
NRP2	0	genome.wustl.edu	37	2	206659845	206659845	+	RNA	DEL	T	T	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	206659845	206659845	T	-	DEL	NRP2	ENST00000467850	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.465	-	-	-	no_errors	NRP2	HGNC	ENSG00000118257				9	0	0	3	3	50
INO80D	0	genome.wustl.edu	37	2	206874385	206874386	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	206874385	206874386	-	G	INS	INO80D	ENST00000403263	human	ensembl	74_37	-1	known	frame_shift_ins	c.1676_1675	p.Q559fs	1.000:1.000	NULL	NULL	-	no_errors	INO80D	HGNC	ENSG00000114933				102	0	0	116	16	12.1212
MAP2	0	genome.wustl.edu	37	2	210561666	210561667	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	210561666	210561667	-	A	INS	MAP2	ENST00000360351	human	ensembl	74_37	+1	known	frame_shift_ins	c.4413_4414	p.T1473fs	1.000:1.000	pfam_MAP2_projctn	pfam_MAP2_projctn,pfam_MAP_tubulin-bd_rpt	-	no_errors	MAP2	HGNC	ENSG00000078018				49	0	0	47	10	17.5439
SPEG	0	genome.wustl.edu	37	2	220348470	220348470	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	220348470	220348470	G	-	DEL	SPEG	ENST00000312358	human	ensembl	74_37	+1	novel	frame_shift_del	c.6285	p.G2097fs	0.792	NULL	pfam_Ig_I-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	SPEG	HGNC	ENSG00000072195				11	0	0	4	2	33.3333
SLC4A3	0	genome.wustl.edu	37	2	220504282	220504282	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	220504282	220504282	G	-	DEL	SLC4A3	ENST00000273063	human	ensembl	74_37	+1	known	frame_shift_del	c.3183	p.L1064fs	1.000	pfam_HCO3_transpt_C,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Anion_exchange_3,prints_Anion_exchange,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A3	HGNC	ENSG00000114923				115	1	0.862069	86	16	15.6863
STK25	0	genome.wustl.edu	37	2	242437662	242437662	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	242437662	242437662	G	-	DEL	STK25	ENST00000316586	human	ensembl	74_37	-1	known	frame_shift_del	c.1020	p.H340fs	0.026	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	STK25	HGNC	ENSG00000115694				163	0	0	113	26	18.705
MAPRE3	0	genome.wustl.edu	37	2	27248517	27248517	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	27248517	27248517	C	-	DEL	MAPRE3	ENST00000233121	human	ensembl	74_37	+1	known	frame_shift_del	c.536	p.C182fs	1.000	NULL	pfam_EB1_C,pfam_CH-domain,superfamily_CH-domain,superfamily_EB1_C,pfscan_CH-domain	-	no_errors	MAPRE3	HGNC	ENSG00000084764				85	0	0	71	12	14.4578
MPHOSPH10	0	genome.wustl.edu	37	2	71360643	71360643	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	71360643	71360643	T	-	DEL	MPHOSPH10	ENST00000244230	human	ensembl	74_37	+1	known	frame_shift_del	c.705	p.F237fs	0.995	pfam_Mpp10,pirsf_snoRNP_Mpp10	pfam_Mpp10,pirsf_snoRNP_Mpp10	-	no_errors	MPHOSPH10	HGNC	ENSG00000124383				107	0	0	112	27	19.4245
EIF5B	0	genome.wustl.edu	37	2	99985020	99985021	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	2	99985020	99985021	-	A	INS	EIF5B	ENST00000289371	human	ensembl	74_37	+1	known	frame_shift_ins	c.1353_1354	p.I453fs	1.000:1.000	NULL	pfam_EF_GTP-bd_dom,pfam_TIF_IF2_dom3,pfam_Transl_elong_EFTu/EF1A_2,superfamily_P-loop_NTPase,superfamily_Transl_B-barrel,superfamily_TIF_IF2_dom3,prints_EF_GTP-bd_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	EIF5B	HGNC	ENSG00000158417				56	0	0	52	10	16.129
TGM6	0	genome.wustl.edu	37	20	2384126	2384126	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	20	2384126	2384126	C	-	DEL	TGM6	ENST00000202625	human	ensembl	74_37	+1	known	frame_shift_del	c.1073	p.Q360fs	1.000	NULL	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM6	HGNC	ENSG00000166948				109	0	0	89	16	15.2381
CCM2L	0	genome.wustl.edu	37	20	30602812	30602812	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	20	30602812	30602812	C	-	DEL	CCM2L	ENST00000300415	human	ensembl	74_37	+1	known	frame_shift_del	c.136	p.D48fs	1.000	NULL	NULL	-	no_errors	CCM2L	HGNC	ENSG00000101331				137	0	0	99	18	15.3846
TM9SF4	0	genome.wustl.edu	37	20	30737491	30737491	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	20	30737491	30737491	C	-	DEL	TM9SF4	ENST00000398022	human	ensembl	74_37	+1	known	frame_shift_del	c.1009	p.Q339fs	1.000	pfam_EMP70	pfam_EMP70	-	no_errors	TM9SF4	HGNC	ENSG00000101337				62	0	0	59	9	13.2353
CNBD2	0	genome.wustl.edu	37	20	34572693	34572693	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	20	34572693	34572693	T	-	DEL	CNBD2	ENST00000373973	human	ensembl	74_37	+1	known	frame_shift_del	c.709	p.F238fs	0.958	superfamily_cNMP-bd-like,smart_cNMP-bd_dom	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNBD2	HGNC	ENSG00000149646				216	0	0	154	32	17.2043
RGS19	0	genome.wustl.edu	37	20	62705215	62705217	+	In_Frame_Del	DEL	GGA	GGA	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	GGA	GGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	20	62705215	62705217	GGA	-	DEL	RGS19	ENST00000332298	human	ensembl	74_37	-1	known	in_frame_del	c.645_643	p.S215in_frame_del	0.003:0.167:0.163	NULL	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS19	HGNC	ENSG00000171700				76	0	0	69	11	13.75
CXADR	0	genome.wustl.edu	37	21	18933045	18933045	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	21	18933045	18933045	A	-	DEL	CXADR	ENST00000284878	human	ensembl	74_37	+1	known	frame_shift_del	c.597	p.N201fs	0.978	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	CXADR	HGNC	ENSG00000154639				94	0	0	83	16	16.1616
SH3BGR	0	genome.wustl.edu	37	21	40823995	40823995	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	21	40823995	40823995	G	-	DEL	SH3BGR	ENST00000333634	human	ensembl	74_37	+1	known	frame_shift_del	c.162	p.G56fs	0.996	NULL	pfam_Glut_rich_SH3-bd,superfamily_Thioredoxin-like_fold	-	no_errors	SH3BGR	HGNC	ENSG00000185437				289	0	0	241	34	12.3636
FAM3B	0	genome.wustl.edu	37	21	42694775	42694775	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	21	42694775	42694775	G	-	DEL	FAM3B	ENST00000398646	human	ensembl	74_37	+1	putative	frame_shift_del	c.14	p.D7fs	0.001	NULL	NULL	-	no_errors	FAM3B	HGNC	ENSG00000183844				34	0	0	29	7	19.4444
TRPM2	0	genome.wustl.edu	37	21	45811295	45811295	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	21	45811295	45811295	C	-	DEL	TRPM2	ENST00000300482	human	ensembl	74_37	+1	known	frame_shift_del	c.1581	p.S529fs	0.996	NULL	pfam_Ion_trans_dom,superfamily_NUDIX_hydrolase_dom-like	-	no_errors	TRPM2	HGNC	ENSG00000142185				146	1	0.680272	118	25	17.4825
SERPIND1	0	genome.wustl.edu	37	22	21138420	21138420	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	22	21138420	21138420	G	-	DEL	SERPIND1	ENST00000215727	human	ensembl	74_37	+1	known	frame_shift_del	c.1050	p.G352fs	0.957	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPIND1	HGNC	ENSG00000099937				128	0	0	96	16	14.2857
HIC2	0	genome.wustl.edu	37	22	21799659	21799659	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	22	21799659	21799659	C	-	DEL	HIC2	ENST00000407464	human	ensembl	74_37	+1	known	frame_shift_del	c.475	p.R161fs	0.907	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	HIC2	HGNC	ENSG00000169635				21	0	0	24	3	11.1111
LNP1	0	genome.wustl.edu	37	3	100170527	100170527	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	3	100170527	100170527	T	-	DEL	LNP1	ENST00000489752	human	ensembl	74_37	+1	novel	frame_shift_del	c.160	p.Y55fs	0.000	NULL	NULL	-	no_errors	LNP1	HGNC	ENSG00000206535				24	0	0	22	6	21.4286
BBX	0	genome.wustl.edu	37	3	107492284	107492284	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	3	107492284	107492284	A	-	DEL	BBX	ENST00000325805	human	ensembl	74_37	+1	known	frame_shift_del	c.1716	p.A574fs	0.991	NULL	pfam_TF_HMG_box_BBX_DUF2028,pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	BBX	HGNC	ENSG00000114439				91	0	0	66	17	20.4819
MYH15	0	genome.wustl.edu	37	3	108229398	108229398	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	3	108229398	108229398	A	-	DEL	MYH15	ENST00000273353	human	ensembl	74_37	-1	known	frame_shift_del	c.40	p.W14fs	0.000	NULL	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_Lambda_DNA-bd_dom,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	-	no_errors	MYH15	HGNC	ENSG00000144821				114	0	0	102	10	8.92857
BOC	0	genome.wustl.edu	37	3	112991288	112991288	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	3	112991288	112991288	C	-	DEL	BOC	ENST00000273395	human	ensembl	74_37	+1	known	frame_shift_del	c.699	p.P235fs	1.000	pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	BOC	HGNC	ENSG00000144857				240	0	0	167	33	16.5
PARP15	0	genome.wustl.edu	37	3	122345823	122345823	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	3	122345823	122345823	A	-	DEL	PARP15	ENST00000464300	human	ensembl	74_37	+1	known	frame_shift_del	c.1381	p.R463fs	0.149	pfscan_Macro_dom	pfam_Macro_dom,pfam_Poly(ADP-ribose)pol_cat_dom,smart_Macro_dom,pfscan_Macro_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP15	HGNC	ENSG00000173200				98	0	0	78	9	10.3448
GK5	0	genome.wustl.edu	37	3	141923492	141923492	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	3	141923492	141923492	A	-	DEL	GK5	ENST00000487672	human	ensembl	74_37	-1	known	frame_shift_del	c.456	p.L153fs	0.000	NULL	pfam_Carb_kinase_FGGY_N	-	no_errors	GK5	HGNC	ENSG00000175066				58	0	0	48	8	14.2857
PBX2P1	0	genome.wustl.edu	37	3	142895211	142895211	+	RNA	DEL	G	G	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	3	142895211	142895211	G	-	DEL	PBX2P1	ENST00000560287	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.341	-	-	-	no_errors	PBX2P1	HGNC	ENSG00000244171				18	0	0	19	3	13.6364
MECOM	0	genome.wustl.edu	37	3	169381201	169381201	+	RNA	DEL	T	T	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	3	169381201	169381201	T	-	DEL	MECOM	ENST00000485957	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MECOM	HGNC	ENSG00000085276				13	0	0	10	5	33.3333
LAMP3	0	genome.wustl.edu	37	3	182872079	182872079	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	3	182872079	182872079	T	-	DEL	LAMP3	ENST00000265598	human	ensembl	74_37	-1	known	frame_shift_del	c.150	p.K50fs	0.064	NULL	pfam_Lysosome-assoc_membr_glycop,prints_Lysosome-assoc_membr_glycop	-	no_errors	LAMP3	HGNC	ENSG00000078081				187	0	0	143	33	18.75
MAP3K13	0	genome.wustl.edu	37	3	185165720	185165720	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	3	185165720	185165720	A	-	DEL	MAP3K13	ENST00000265026	human	ensembl	74_37	+1	known	frame_shift_del	c.995	p.V334fs	1.000	pirsf_MAP3K12_MAP3K13,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_MAP3K12_MAP3K13,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP3K13	HGNC	ENSG00000073803				46	0	0	38	8	17.3913
KIAA0226	0	genome.wustl.edu	37	3	197427914	197427915	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	3	197427914	197427915	-	G	INS	KIAA0226	ENST00000296343	human	ensembl	74_37	-1	known	frame_shift_ins	c.831_830	p.V278fs	0.000:0.000	NULL	pfam_Run,smart_Run,pfscan_Run	-	no_errors	KIAA0226	HGNC	ENSG00000145016				134	1	0.740741	99	14	12.3894
ENSG00000232783	0	genome.wustl.edu	37	3	197838274	197838275	+	RNA	DEL	AA	AA	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	3	197838274	197838275	AA	-	DEL	ENSG00000232783	ENST00000411596	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001:0.001	-	-	-	no_errors	AC073135.3	Clone_based_vega_gene	ENSG00000232783				31	0	0	15	3	16.6667
HMGB1P5	0	genome.wustl.edu	37	3	22424081	22424081	+	RNA	DEL	T	T	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	3	22424081	22424081	T	-	DEL	HMGB1P5	ENST00000451497	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	HMGB1P5	HGNC	ENSG00000132967				26	0	0	20	4	16.6667
SCN10A	0	genome.wustl.edu	37	3	38750970	38750970	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	3	38750970	38750970	T	-	DEL	SCN10A	ENST00000449082	human	ensembl	74_37	-1	known	frame_shift_del	c.4280	p.K1427fs	1.000	NULL	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN10A	HGNC	ENSG00000185313				132	0	0	123	21	14.5833
QARS	0	genome.wustl.edu	37	3	49135641	49135641	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	3	49135641	49135641	A	-	DEL	QARS	ENST00000306125	human	ensembl	74_37	-1	known	frame_shift_del	c.2135	p.L712fs	1.000	pfam_Glu/Gln-tRNA-synth_Ib_codon-bd,superfamily_Ribosomal_L25/Gln-tRNA_synth,tigrfam_Gln-tRNA-synth	pfam_Glu/Gln-tRNA-synth_Ib_cat-dom,pfam_Gln-tRNA-synth_Ib_RNA-bd_N,pfam_Glu/Gln-tRNA-synth_Ib_codon-bd,pfam_Gln-tRNA-synth_Ib_RNA-bd_2,superfamily_Ribosomal_L25/Gln-tRNA_synth,prints_Glu/Gln-tRNA-synth,tigrfam_Gln-tRNA-synth	-	no_errors	QARS	HGNC	ENSG00000172053				87	0	0	57	8	12.3077
DOCK3	0	genome.wustl.edu	37	3	51417604	51417604	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	3	51417604	51417604	C	-	DEL	DOCK3	ENST00000266037	human	ensembl	74_37	+1	known	frame_shift_del	c.5549	p.P1852fs	0.115	NULL	pfam_DOCK_C,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK3	HGNC	ENSG00000088538				82	0	0	47	8	14.5455
ENSG00000271976	0	genome.wustl.edu	37	3	53894308	53894308	+	RNA	DEL	T	T	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	3	53894308	53894308	T	-	DEL	ENSG00000271976	ENST00000607783	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	RP11-884K10.7	Clone_based_vega_gene	ENSG00000271976				59	0	0	35	10	22.2222
PRICKLE2-AS3	0	genome.wustl.edu	37	3	64184686	64184686	+	RNA	DEL	T	T	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	3	64184686	64184686	T	-	DEL	PRICKLE2-AS3	ENST00000473434	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.222	-	-	-	no_errors	PRICKLE2-AS3	HGNC	ENSG00000226017				27	0	0	18	11	37.931
ANK2	0	genome.wustl.edu	37	4	114280135	114280135	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	4	114280135	114280135	G	-	DEL	ANK2	ENST00000357077	human	ensembl	74_37	+1	known	frame_shift_del	c.10361	p.G3456fs	0.005	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,smart_Ankyrin_rpt,smart_ZU5,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK2	HGNC	ENSG00000145362				77	0	0	73	9	10.9756
MGST2	0	genome.wustl.edu	37	4	140624683	140624683	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	4	140624683	140624683	A	-	DEL	MGST2	ENST00000265498	human	ensembl	74_37	+1	known	frame_shift_del	c.304	p.K103fs	0.060	pfam_Membr-assoc_MAPEG	pfam_Membr-assoc_MAPEG,prints_5_LipOase_AP	-	no_errors	MGST2	HGNC	ENSG00000085871				83	0	0	92	16	14.8148
SH3D19	0	genome.wustl.edu	37	4	152054188	152054188	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	4	152054188	152054188	A	-	DEL	SH3D19	ENST00000304527	human	ensembl	74_37	-1	known	frame_shift_del	c.1916	p.L639fs	0.943	NULL	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_p67phox,prints_SH3_domain	-	no_errors	SH3D19	HGNC	ENSG00000109686				37	0	0	25	3	10.7143
FGFBP1	0	genome.wustl.edu	37	4	15938178	15938178	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	4	15938178	15938178	T	-	DEL	FGFBP1	ENST00000259988	human	ensembl	74_37	-1	known	frame_shift_del	c.78	p.V27fs	0.001	pfam_FGF1-bd	pfam_FGF1-bd	-	no_errors	FGFBP1	HGNC	ENSG00000137440				166	0	0	131	26	16.5605
WHSC1	0	genome.wustl.edu	37	4	1980558	1980559	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	4	1980558	1980559	-	C	INS	WHSC1	ENST00000382891	human	ensembl	74_37	+1	known	frame_shift_ins	c.4020_4021	p.E1343fs	0.734:0.982	NULL	pfam_PWWP_dom,pfam_SET_dom,pfam_Znf_PHD-finger,pfam_HMG_box_dom,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_PWWP_dom,smart_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_AWS,smart_SET_dom,smart_Post-SET_dom,pfscan_AWS,pfscan_PWWP_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING,pfscan_HMG_box_dom	-	no_errors	WHSC1	HGNC	ENSG00000109685				38	0	0	43	5	10.4167
SH3BP2	0	genome.wustl.edu	37	4	2831768	2831768	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	4	2831768	2831768	C	-	DEL	SH3BP2	ENST00000503393	human	ensembl	74_37	+1	known	frame_shift_del	c.1306	p.V438fs	0.997	NULL	pfam_Pleckstrin_homology,pfam_SH2,smart_Pleckstrin_homology,smart_SH2,pfscan_Pleckstrin_homology,pfscan_SH2	-	no_errors	SH3BP2	HGNC	ENSG00000087266				76	0	0	61	10	14.0845
GRK4	0	genome.wustl.edu	37	4	3040280	3040282	+	RNA	DEL	AAA	AAA	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	AAA	AAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	4	3040280	3040282	AAA	-	DEL	GRK4	ENST00000504308	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002:0.003:0.005	-	-	-	no_errors	GRK4	HGNC	ENSG00000125388				49	0	0	24	13	35.1351
KLF3	0	genome.wustl.edu	37	4	38690460	38690460	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	4	38690460	38690460	A	-	DEL	KLF3	ENST00000261438	human	ensembl	74_37	+1	known	frame_shift_del	c.312	p.K106fs	0.008	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	KLF3	HGNC	ENSG00000109787				102	0	0	103	12	10.4348
KLF3	0	genome.wustl.edu	37	4	38691476	38691476	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	4	38691476	38691476	C	-	DEL	KLF3	ENST00000261438	human	ensembl	74_37	+1	known	frame_shift_del	c.671	p.P226fs	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	KLF3	HGNC	ENSG00000109787				179	0	0	138	26	15.8537
UGDH	0	genome.wustl.edu	37	4	39515753	39515753	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	4	39515753	39515753	A	-	DEL	UGDH	ENST00000316423	human	ensembl	74_37	-1	known	frame_shift_del	c.214	p.S72fs	1.000	pfam_UDP-Glc/GDP-Man_DH_N,tigrfam_UDP-Glc/GDP-Man	pfam_UDP-Glc/GDP-Man_DH_N,pfam_UDP-Glc/GDP-Man_DH_C,pfam_UDP-Glc/GDP-Man_DH_dimer,superfamily_UDP-Glc/GDP-Man_DH_C,superfamily_6-PGluconate_DH_C-like,tigrfam_UDP-Glc/GDP-Man	-	no_errors	UGDH	HGNC	ENSG00000109814				171	0	0	159	10	5.91716
LIMCH1	0	genome.wustl.edu	37	4	41648508	41648511	+	Frame_Shift_Del	DEL	GAGA	GAGA	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	GAGA	GAGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	4	41648508	41648511	GAGA	-	DEL	LIMCH1	ENST00000503057	human	ensembl	74_37	+1	known	frame_shift_del	c.2418_2421	p.R809fs	0.997:1.000:1.000:1.000	NULL	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	LIMCH1	HGNC	ENSG00000064042				138	0	0	136	11	7.48299
GUF1	0	genome.wustl.edu	37	4	44680574	44680574	+	RNA	DEL	A	A	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	4	44680574	44680574	A	-	DEL	GUF1	ENST00000506793	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GUF1	HGNC	ENSG00000151806				13	0	0	9	4	30.7692
GABRG1	0	genome.wustl.edu	37	4	46060357	46060358	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	4	46060357	46060358	-	A	INS	GABRG1	ENST00000295452	human	ensembl	74_37	-1	known	frame_shift_ins	c.793_792	p.D264fs	1.000:1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,prints_Neur_channel,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABBAg_rcpt,prints_GABAA_rcpt,prints_GABBAg1_rcpt,prints_GABAAa_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GABRG1	HGNC	ENSG00000163285				87	0	0	91	16	14.9533
HSD17B11	0	genome.wustl.edu	37	4	88312252	88312252	+	RNA	DEL	T	T	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	4	88312252	88312252	T	-	DEL	HSD17B11	ENST00000508413	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	HSD17B11	HGNC	ENSG00000198189				20	0	0	12	3	20
ATOH1	0	genome.wustl.edu	37	4	94750381	94750382	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	4	94750381	94750382	-	G	INS	ATOH1	ENST00000306011	human	ensembl	74_37	+1	known	frame_shift_ins	c.304_305	p.E104fs	0.035:0.113	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	ATOH1	HGNC	ENSG00000172238				40	0	0	37	3	7.5
FTMT	0	genome.wustl.edu	37	5	121187789	121187789	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	5	121187789	121187789	C	-	DEL	FTMT	ENST00000321339	human	ensembl	74_37	+1	known	frame_shift_del	c.131	p.R46fs	0.000	NULL	pfam_Ferritin_DPS_dom,superfamily_Ferritin-like_SF,pfscan_Ferritin-like_diiron	-	no_errors	FTMT	HGNC	ENSG00000181867				25	0	0	23	5	17.8571
ZNF608	0	genome.wustl.edu	37	5	123984684	123984684	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	5	123984684	123984684	C	-	DEL	ZNF608	ENST00000306315	human	ensembl	74_37	-1	known	frame_shift_del	c.1393	p.A465fs	0.918	NULL	NULL	-	no_errors	ZNF608	HGNC	ENSG00000168916				136	0	0	118	19	13.8686
MEGF10	0	genome.wustl.edu	37	5	126732274	126732274	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	5	126732274	126732274	A	-	DEL	MEGF10	ENST00000274473	human	ensembl	74_37	+1	known	frame_shift_del	c.463	p.N156fs	1.000	pfam_EGF_laminin,smart_EG-like_dom,smart_EGF_laminin,pfscan_EG-like_dom	pfam_EGF_laminin,pfam_EGF_extracell,superfamily_Proteinase_amylase_inhib_dom,smart_EG-like_dom,smart_EGF_laminin,pfscan_EG-like_dom,pfscan_EMI_domain	-	no_errors	MEGF10	HGNC	ENSG00000145794				150	0	0	140	20	12.5
DNAH5	0	genome.wustl.edu	37	5	13766156	13766156	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	5	13766156	13766156	T	-	DEL	DNAH5	ENST00000265104	human	ensembl	74_37	-1	known	frame_shift_del	c.10030	p.S3344fs	0.326	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139				194	0	0	168	27	13.8462
PCDHGA10	0	genome.wustl.edu	37	5	140794611	140794611	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	5	140794611	140794611	G	-	DEL	PCDHGA10	ENST00000398610	human	ensembl	74_37	+1	known	frame_shift_del	c.1869	p.E625fs	0.964	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA10	HGNC	ENSG00000253846				155	0	0	137	20	12.7389
ARHGAP26	0	genome.wustl.edu	37	5	142586763	142586763	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	5	142586763	142586763	C	-	DEL	ARHGAP26	ENST00000274498	human	ensembl	74_37	+1	known	frame_shift_del	c.1989	p.P665fs	1.000	superfamily_SH3_domain	pfam_RhoGAP_dom,pfam_SH3_domain,pfam_SH3_2,pfam_IRSp53/MIM_homology_IMD,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_RhoGAP_dom,smart_SH3_domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	ARHGAP26	HGNC	ENSG00000145819				101	0	0	107	18	14.4
SLC6A7	0	genome.wustl.edu	37	5	149580755	149580755	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	5	149580755	149580755	C	-	DEL	SLC6A7	ENST00000230671	human	ensembl	74_37	+1	known	frame_shift_del	c.827	p.Q278fs	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	-	no_errors	SLC6A7	HGNC	ENSG00000011083				79	0	0	62	9	12.6761
SYNPO	0	genome.wustl.edu	37	5	150028264	150028264	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	5	150028264	150028264	C	-	DEL	SYNPO	ENST00000394243	human	ensembl	74_37	+1	known	frame_shift_del	c.1159	p.Q388fs	0.000	NULL	NULL	-	no_errors	SYNPO	HGNC	ENSG00000171992				210	0	0	180	10	5.26316
FAT2	0	genome.wustl.edu	37	5	150946553	150946553	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	5	150946553	150946553	T	-	DEL	FAT2	ENST00000261800	human	ensembl	74_37	-1	known	frame_shift_del	c.1940	p.N647fs	0.120	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Laminin_G,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT2	HGNC	ENSG00000086570				85	0	0	77	14	15.3846
SIMC1	0	genome.wustl.edu	37	5	175772230	175772230	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	5	175772230	175772230	A	-	DEL	SIMC1	ENST00000443967	human	ensembl	74_37	+1	known	frame_shift_del	c.2401	p.R802fs	1.000	NULL	NULL	-	no_errors	SIMC1	HGNC	ENSG00000170085				193	1	0.515464	145	27	15.6977
PHYKPL	0	genome.wustl.edu	37	5	177658502	177658503	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	5	177658502	177658503	-	A	INS	PHYKPL	ENST00000308158	human	ensembl	74_37	-1	known	frame_shift_ins	c.82_81	p.P27fs	0.742:0.486	NULL	pfam_Aminotrans_3,superfamily_PyrdxlP-dep_Trfase	-	no_errors	PHYKPL	HGNC	ENSG00000175309				187	0	0	161	13	7.47126
DNAJC21	0	genome.wustl.edu	37	5	34945872	34945873	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	5	34945872	34945873	-	A	INS	DNAJC21	ENST00000382021	human	ensembl	74_37	+1	known	frame_shift_ins	c.1149_1150	p.Q385fs	1.000:1.000	NULL	pfam_DnaJ_domain,pfam_Znf_C2H2_jaz,superfamily_DnaJ_domain,smart_DnaJ_domain,smart_Znf_U1,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_DnaJ_domain,prints_DnaJ_domain	-	no_errors	DNAJC21	HGNC	ENSG00000168724				232	0	0	186	27	12.6761
MARVELD2	0	genome.wustl.edu	37	5	68736316	68736316	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	5	68736316	68736316	A	-	DEL	MARVELD2	ENST00000325631	human	ensembl	74_37	+1	known	frame_shift_del	c.1543	p.K517fs	0.996	pfam_Occludin_RNApol2_elong_fac_ELL	pfam_Occludin_RNApol2_elong_fac_ELL,pfam_Marvel	-	no_errors	MARVELD2	HGNC	ENSG00000152939				53	0	0	35	7	16.6667
TBCA	0	genome.wustl.edu	37	5	76989051	76989051	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	5	76989051	76989051	A	-	DEL	TBCA	ENST00000306388	human	ensembl	74_37	-1	putative	frame_shift_del	c.286	p.S96fs	0.176	NULL	pfam_CofA_tubulin-bd,superfamily_CofA_tubulin-bd	-	no_errors	TBCA	HGNC	ENSG00000171530				21	0	0	19	5	20.8333
MSH3	0	genome.wustl.edu	37	5	79970915	79970915	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	5	79970915	79970915	A	-	DEL	MSH3	ENST00000265081	human	ensembl	74_37	+1	known	frame_shift_del	c.1141	p.K383fs	0.982	pfam_DNA_mmatch_repair_MutS_con_dom,superfamily_DNA_mmatch_repair_MutS_con_dom	pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS_core,pfam_DNA_mmatch_repair_MutS_con_dom,pfam_DNA_mismatch_repair_MutS-lik_N,pfam_DNA_mismatch_repair_MutS_clamp,superfamily_DNA_mismatch_repair_MutS_core,superfamily_P-loop_NTPase,superfamily_DNA_mismatch_repair_MutS_N,superfamily_DNA_mmatch_repair_MutS_con_dom,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C	-	no_errors	MSH3	HGNC	ENSG00000113318				172	0	0	159	24	13.1148
RASA1	0	genome.wustl.edu	37	5	86675571	86675571	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	5	86675571	86675571	A	-	DEL	RASA1	ENST00000274376	human	ensembl	74_37	+1	known	frame_shift_del	c.2507	p.N838fs	1.000	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,smart_RasGAP,pfscan_RasGAP	pfam_SH2,pfam_RasGAP,pfam_Pleckstrin_homology,pfam_SH3_domain,pfam_C2_dom,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_SH2,smart_SH3_domain,smart_Pleckstrin_homology,smart_C2_dom,smart_RasGAP,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_RasGAP,prints_SH2	-	no_errors	RASA1	HGNC	ENSG00000145715				59	0	0	41	7	14.5833
TBC1D32	0	genome.wustl.edu	37	6	121563353	121563353	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	6	121563353	121563353	T	-	DEL	TBC1D32	ENST00000275159	human	ensembl	74_37	-1	putative	frame_shift_del	c.2151	p.K717fs	1.000	NULL	superfamily_Rab-GTPase-TBC_dom	-	no_errors	TBC1D32	HGNC	ENSG00000146350				70	0	0	60	12	16.6667
AKAP7	0	genome.wustl.edu	37	6	131481276	131481276	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	6	131481276	131481276	A	-	DEL	AKAP7	ENST00000368123	human	ensembl	74_37	+1	known	frame_shift_del	c.163	p.K57fs	0.449	pfam_Kinase-A_anchor_nucl_local_sig	pfam_Kinase-A_anchor_nucl_local_sig,pfam_Kinase-A_anchor_RI-RII-bd_dom,superfamily_RNA_ligase/cNuc_Pdiesterase	-	no_errors	AKAP7	HGNC	ENSG00000118507				73	0	0	61	14	18.6667
GPR126	0	genome.wustl.edu	37	6	142741018	142741019	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	6	142741018	142741019	-	T	INS	GPR126	ENST00000367609	human	ensembl	74_37	+1	known	frame_shift_ins	c.3096_3097	p.L1034fs	1.000:1.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_secretin-like,pfam_CUB_dom,pfam_GPS_dom,pfam_Pentaxin,superfamily_CUB_dom,superfamily_ConA-like_lec_gl_sf,smart_CUB_dom,smart_Pentaxin,smart_GPS_dom,pfscan_CUB_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR126	HGNC	ENSG00000112414				162	0	0	128	24	15.7895
HIVEP2	0	genome.wustl.edu	37	6	143095843	143095843	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	6	143095843	143095843	T	-	DEL	HIVEP2	ENST00000012134	human	ensembl	74_37	-1	known	frame_shift_del	c.33	p.A12fs	0.954	NULL	pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP2	HGNC	ENSG00000010818				307	0	0	217	44	16.8582
GRM1	0	genome.wustl.edu	37	6	146755373	146755374	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	6	146755373	146755374	-	C	INS	GRM1	ENST00000282753	human	ensembl	74_37	+1	known	frame_shift_ins	c.3026_3027	p.K1011fs	0.091:0.512	NULL	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_Metabotropic_Glu_rcpt_Homer-bd,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3_mtglu_rcpt_1,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_5	-	no_errors	GRM1	HGNC	ENSG00000152822				246	0	0	184	19	9.35961
LATS1	0	genome.wustl.edu	37	6	150005455	150005455	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	6	150005455	150005455	G	-	DEL	LATS1	ENST00000253339	human	ensembl	74_37	-1	known	frame_shift_del	c.770	p.P257fs	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,pfam_UBA/Ts_N,superfamily_Kinase-like_dom,superfamily_UBA-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom	-	no_errors	LATS1	HGNC	ENSG00000131023				312	0	0	290	43	12.9129
PLEKHG1	0	genome.wustl.edu	37	6	151089838	151089838	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	6	151089838	151089838	T	-	DEL	PLEKHG1	ENST00000358517	human	ensembl	74_37	+1	known	frame_shift_del	c.476	p.F160fs	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG1	HGNC	ENSG00000120278				40	0	0	29	5	14.7059
JARID2	0	genome.wustl.edu	37	6	15496722	15496722	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	6	15496722	15496722	G	-	DEL	JARID2	ENST00000341776	human	ensembl	74_37	+1	known	frame_shift_del	c.1266	p.R425fs	0.963	NULL	pfam_JmjC_dom,pfam_ARID/BRIGHT_DNA-bd,pfam_TF_JmjN,pfam_Znf_C5HC2,superfamily_ARID/BRIGHT_DNA-bd,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	JARID2	HGNC	ENSG00000008083				105	0	0	73	9	10.9756
MLLT4	0	genome.wustl.edu	37	6	168272982	168272982	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	6	168272982	168272982	A	-	DEL	MLLT4	ENST00000366806	human	ensembl	74_37	+1	known	frame_shift_del	c.503	p.K170fs	1.000	NULL	pfam_Ras-assoc,pfam_Dil_domain,pfam_PDZ,pfam_FHA_dom,superfamily_PDZ,superfamily_SMAD_FHA_domain,smart_Ras-assoc,smart_FHA_dom,smart_PDZ,pfscan_Dilute,pfscan_PDZ,pfscan_Ras-assoc	-	no_errors	MLLT4	HGNC	ENSG00000130396				132	0	0	92	26	22.0339
MLLT4	0	genome.wustl.edu	37	6	168325729	168325729	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	6	168325729	168325729	A	-	DEL	MLLT4	ENST00000366806	human	ensembl	74_37	+1	known	frame_shift_del	c.3036	p.K1014fs	0.004	pfam_PDZ,superfamily_PDZ,pfscan_PDZ	pfam_Ras-assoc,pfam_Dil_domain,pfam_PDZ,pfam_FHA_dom,superfamily_PDZ,superfamily_SMAD_FHA_domain,smart_Ras-assoc,smart_FHA_dom,smart_PDZ,pfscan_Dilute,pfscan_PDZ,pfscan_Ras-assoc	-	no_errors	MLLT4	HGNC	ENSG00000130396				70	0	0	87	9	9.375
THBS2	0	genome.wustl.edu	37	6	169637324	169637324	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	6	169637324	169637324	C	-	DEL	THBS2	ENST00000366787	human	ensembl	74_37	-1	known	frame_shift_del	c.1418	p.G473fs	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Thrombospondin_C,pfam_Thrombospondin_1_rpt,pfam_VWF_C,pfam_Thrombospondin_3-like_rpt,pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Thrombospondin_1_rpt,smart_Laminin_G,smart_VWF_C,smart_Thrombospondin_1_rpt,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Thrombospondin_1_rpt,pfscan_VWF_C	-	no_errors	THBS2	HGNC	ENSG00000186340				37	0	0	38	7	15.5556
HLA-A	0	genome.wustl.edu	37	6	29910372	29910372	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	6	29910372	29910372	G	-	DEL	HLA-A	ENST00000376806	human	ensembl	74_37	+1	known	frame_shift_del	c.42	p.A16fs	0.000	NULL	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,pfam_MHC_I_a_C,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like_dom,prints_MHC_I_a	-	no_errors	HLA-A	HGNC	ENSG00000206503				88	0	0	62	11	15.0685
PRR3	0	genome.wustl.edu	37	6	30530201	30530201	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	6	30530201	30530201	A	-	DEL	PRR3	ENST00000376560	human	ensembl	74_37	+1	known	frame_shift_del	c.496	p.K167fs	1.000	pfam_Znf_CCCH,smart_Znf_CCCH	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	PRR3	HGNC	ENSG00000204576				356	0	0	289	41	12.4242
TAP2	0	genome.wustl.edu	37	6	32805788	32805788	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	6	32805788	32805788	G	-	DEL	TAP2	ENST00000374897	human	ensembl	74_37	-1	known	frame_shift_del	c.223	p.L75fs	0.060	prints_ABC_B3,tigrfam_Ag_transporter2	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC1_TM_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,prints_ABC_B3,prints_ABC_B2,tigrfam_Ag_transporter2	-	no_errors	TAP2	HGNC	ENSG00000204267				81	0	0	84	11	11.5789
BAK1	0	genome.wustl.edu	37	6	33543655	33543655	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	6	33543655	33543655	A	-	DEL	BAK1	ENST00000360661	human	ensembl	74_37	-1	known	frame_shift_del	c.121	p.Y41fs	0.805	NULL	pfam_Blc2_fam,pfscan_Bcl2-like,prints_Blc2_fam	-	no_errors	BAK1	HGNC	ENSG00000030110				119	1	0.833333	93	20	17.6991
SPDEF	0	genome.wustl.edu	37	6	34512173	34512173	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	6	34512173	34512173	G	-	DEL	SPDEF	ENST00000374037	human	ensembl	74_37	-1	known	frame_shift_del	c.60	p.D21fs	0.165	NULL	pfam_Ets_dom,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	SPDEF	HGNC	ENSG00000124664				38	0	0	27	4	12.9032
PRPF4B	0	genome.wustl.edu	37	6	4052975	4052975	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	6	4052975	4052975	A	-	DEL	PRPF4B	ENST00000337659	human	ensembl	74_37	+1	known	frame_shift_del	c.2334	p.K780fs	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	PRPF4B	HGNC	ENSG00000112739				53	0	0	29	5	14.7059
MDFI	0	genome.wustl.edu	37	6	41617367	41617367	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	6	41617367	41617367	G	-	DEL	MDFI	ENST00000230321	human	ensembl	74_37	+1	known	frame_shift_del	c.270	p.N92fs	0.997	NULL	NULL	-	no_errors	MDFI	HGNC	ENSG00000112559				432	0	0	327	45	12.0968
RIMS1	0	genome.wustl.edu	37	6	73110525	73110525	+	RNA	DEL	T	T	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	6	73110525	73110525	T	-	DEL	RIMS1	ENST00000431478	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RIMS1	HGNC	ENSG00000079841				14	0	0	9	4	30.7692
TTK	0	genome.wustl.edu	37	6	80751897	80751897	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	6	80751897	80751897	A	-	DEL	TTK	ENST00000369798	human	ensembl	74_37	+1	known	frame_shift_del	c.2552	p.R854fs	0.102	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TTK	HGNC	ENSG00000112742				94	0	0	68	14	17.0732
MANEA	0	genome.wustl.edu	37	6	96053719	96053719	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	6	96053719	96053719	A	-	DEL	MANEA	ENST00000358812	human	ensembl	74_37	+1	known	frame_shift_del	c.827	p.K277fs	1.000	NULL	superfamily_Glycoside_hydrolase_SF	-	no_errors	MANEA	HGNC	ENSG00000172469				83	0	0	77	15	16.3043
PCOLCE	0	genome.wustl.edu	37	7	100204202	100204202	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	7	100204202	100204202	C	-	DEL	PCOLCE	ENST00000223061	human	ensembl	74_37	+1	known	frame_shift_del	c.889	p.K299fs	0.006	NULL	pfam_CUB_dom,pfam_Netrin_module_non-TIMP,superfamily_CUB_dom,superfamily_TIMP-like_OB-fold,smart_CUB_dom,smart_Netrin_module_non-TIMP,pfscan_CUB_dom,pfscan_Netrin_domain	-	no_errors	PCOLCE	HGNC	ENSG00000106333				78	0	0	49	5	9.25926
IFRD1	0	genome.wustl.edu	37	7	112108039	112108039	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	7	112108039	112108039	T	-	DEL	IFRD1	ENST00000005558	human	ensembl	74_37	+1	known	frame_shift_del	c.910	p.Y306fs	1.000	pfam_Interferon-rel_develop_reg_N,superfamily_ARM-type_fold	pfam_Interferon-rel_develop_reg_N,pfam_Interferon-rel_develop_reg_C,superfamily_ARM-type_fold	-	no_errors	IFRD1	HGNC	ENSG00000006652				53	0	0	46	6	11.5385
TBXAS1	0	genome.wustl.edu	37	7	139719863	139719863	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	7	139719863	139719863	A	-	DEL	TBXAS1	ENST00000416849	human	ensembl	74_37	+1	known	frame_shift_del	c.1707	p.N571fs	0.058	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_B	-	no_errors	TBXAS1	HGNC	ENSG00000059377				136	1	0.729927	134	15	10.0671
FASTK	0	genome.wustl.edu	37	7	150773780	150773780	+	RNA	DEL	G	G	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	7	150773780	150773780	G	-	DEL	FASTK	ENST00000489884	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.065	-	-	-	no_errors	FASTK	HGNC	ENSG00000164896				17	0	0	12	4	25
CHPF2	0	genome.wustl.edu	37	7	150932283	150932283	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	7	150932283	150932283	G	-	DEL	CHPF2	ENST00000035307	human	ensembl	74_37	+1	known	frame_shift_del	c.413	p.A140fs	1.000	NULL	pfam_Chond_GalNAc,pfam_Fringe-like	-	no_errors	CHPF2	HGNC	ENSG00000033100				172	0	0	163	18	9.94475
WDR60	0	genome.wustl.edu	37	7	158695164	158695164	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	7	158695164	158695164	A	-	DEL	WDR60	ENST00000407559	human	ensembl	74_37	+1	known	frame_shift_del	c.1235	p.K414fs	0.006	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	WDR60	HGNC	ENSG00000126870				107	1	0.925926	94	14	12.963
MPP6	0	genome.wustl.edu	37	7	24705665	24705666	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	7	24705665	24705666	-	A	INS	MPP6	ENST00000222644	human	ensembl	74_37	+1	known	frame_shift_ins	c.909_910	p.K306fs	1.000:1.000	superfamily_SH3_domain	pfam_GK/Ca_channel_bsu,pfam_L27_C,pfam_SH3_2,pfam_PDZ,pfam_SH3_domain,superfamily_P-loop_NTPase,superfamily_SH3_domain,superfamily_PDZ,smart_L27,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like	-	no_errors	MPP6	HGNC	ENSG00000105926				230	0	0	202	29	12.5541
CBX3	0	genome.wustl.edu	37	7	26242614	26242614	+	RNA	DEL	A	A	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	7	26242614	26242614	A	-	DEL	CBX3	ENST00000497498	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.997	-	-	-	no_errors	CBX3	HGNC	ENSG00000122565				109	0	0	92	21	18.5841
SNX10	0	genome.wustl.edu	37	7	26404689	26404689	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	7	26404689	26404689	A	-	DEL	SNX10	ENST00000446848	human	ensembl	74_37	+1	known	frame_shift_del	c.313	p.N106fs	1.000	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	SNX10	HGNC	ENSG00000086300				82	0	0	73	11	13.0952
CARD11	0	genome.wustl.edu	37	7	2962854	2962854	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	7	2962854	2962854	C	-	DEL	CARD11	ENST00000396946	human	ensembl	74_37	-1	known	frame_shift_del	c.2054	p.G685fs	1.000	superfamily_PDZ	pfam_CARD,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,superfamily_PDZ,pfscan_CARD	-	no_errors	CARD11	HGNC	ENSG00000198286				82	0	0	71	7	8.97436
CDK13	0	genome.wustl.edu	37	7	40134237	40134238	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	7	40134237	40134238	-	T	INS	CDK13	ENST00000181839	human	ensembl	74_37	+1	known	frame_shift_ins	c.4197_4198	p.P1400fs	0.949:1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDK13	HGNC	ENSG00000065883				245	0	0	187	30	13.8249
COL28A1	0	genome.wustl.edu	37	7	7412846	7412846	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	7	7412846	7412846	T	-	DEL	COL28A1	ENST00000399429	human	ensembl	74_37	-1	known	frame_shift_del	c.2691	p.V898fs	0.997	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_Collagen,pfam_VWF_A,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,smart_VWF_A,smart_Prot_inh_Kunz-m,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m	-	no_errors	COL28A1	HGNC	ENSG00000215018				64	0	0	53	16	23.1884
TMEM60	0	genome.wustl.edu	37	7	77423460	77423460	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	7	77423460	77423460	T	-	DEL	TMEM60	ENST00000257663	human	ensembl	74_37	-1	known	frame_shift_del	c.231	p.A78fs	0.998	NULL	pfam_TM_Fragile-X-F-assoc	-	no_errors	TMEM60	HGNC	ENSG00000135211				99	0	0	77	14	15.3846
AKAP9	0	genome.wustl.edu	37	7	91671391	91671392	+	Frame_Shift_Ins	INS	-	-	AG			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	7	91671391	91671392	-	AG	INS	AKAP9	ENST00000359028	human	ensembl	74_37	+1	known	frame_shift_ins	c.4985_4986	p.E1666fs	1.000:1.000	NULL	pfam_PACT_domain,superfamily_Prefoldin,superfamily_YbaB	-	no_errors	AKAP9	HGNC	ENSG00000127914				71	0	0	67	8	10.6667
VPS13B	0	genome.wustl.edu	37	8	100654474	100654474	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	8	100654474	100654474	A	-	DEL	VPS13B	ENST00000358544	human	ensembl	74_37	+1	known	frame_shift_del	c.5731	p.I1913fs	0.452	NULL	pfam_Autophagy-rel_C	-	no_errors	VPS13B	HGNC	ENSG00000132549				251	0	0	223	33	12.8906
POLR2K	0	genome.wustl.edu	37	8	101164033	101164033	+	RNA	DEL	T	T	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	8	101164033	101164033	T	-	DEL	POLR2K	ENST00000519765	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	POLR2K	HGNC	ENSG00000147669				33	0	0	17	18	51.4286
DCAF13	0	genome.wustl.edu	37	8	104439487	104439487	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	8	104439487	104439487	T	-	DEL	DCAF13	ENST00000519682	human	ensembl	74_37	+1	putative	frame_shift_del	c.619	p.F209fs	0.001	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF13	HGNC	ENSG00000164934				46	0	0	39	16	29.0909
RIMS2	0	genome.wustl.edu	37	8	105263262	105263262	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	8	105263262	105263262	A	-	DEL	RIMS2	ENST00000406091	human	ensembl	74_37	+1	known	frame_shift_del	c.3702	p.V1236fs	0.832	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_Znf_FYVE_PHD,superfamily_PDZ,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ,pfscan_Znf_FYVE-typ,pfscan_Znf_FYVE-rel	-	no_errors	RIMS2	HGNC	ENSG00000176406				88	0	0	89	7	7.29167
LRP12	0	genome.wustl.edu	37	8	105601140	105601141	+	RNA	DEL	GA	GA	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	GA	GA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	8	105601140	105601141	GA	-	DEL	LRP12	ENST00000520770	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.991:0.989	-	-	-	no_errors	LRP12	HGNC	ENSG00000147650				31	0	0	39	3	7.14286
EFR3A	0	genome.wustl.edu	37	8	132982802	132982802	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	8	132982802	132982802	G	-	DEL	EFR3A	ENST00000254624	human	ensembl	74_37	+1	known	frame_shift_del	c.1071	p.G359fs	0.042	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	EFR3A	HGNC	ENSG00000132294				121	0	0	143	11	7.14286
AGO2	0	genome.wustl.edu	37	8	141557692	141557692	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	8	141557692	141557692	C	-	DEL	AGO2	ENST00000220592	human	ensembl	74_37	-1	known	frame_shift_del	c.1623	p.M542fs	0.091	pfam_Piwi,superfamily_RNaseH-like_dom,smart_Piwi,pfscan_Piwi	pfam_Piwi,pfam_PAZ_dom,pfam_DUF1785,superfamily_RNaseH-like_dom,superfamily_PAZ_dom,smart_PAZ_dom,smart_Piwi,pfscan_PAZ_dom,pfscan_Piwi	-	no_errors	AGO2	HGNC	ENSG00000123908				88	0	0	89	7	7.29167
PSD3	0	genome.wustl.edu	37	8	18490296	18490296	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	8	18490296	18490296	T	-	DEL	PSD3	ENST00000440756	human	ensembl	74_37	-1	known	frame_shift_del	c.2243	p.K748fs	1.000	NULL	pfam_Sec7_dom,pfam_Pleckstrin_homology,superfamily_Sec7_dom,smart_Sec7_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Sec7_dom	-	no_errors	PSD3	HGNC	ENSG00000156011				49	0	0	35	9	20.4545
PSD3	0	genome.wustl.edu	37	8	18729796	18729796	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	8	18729796	18729796	T	-	DEL	PSD3	ENST00000440756	human	ensembl	74_37	-1	known	frame_shift_del	c.578	p.N193fs	0.030	NULL	pfam_Sec7_dom,pfam_Pleckstrin_homology,superfamily_Sec7_dom,smart_Sec7_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Sec7_dom	-	no_errors	PSD3	HGNC	ENSG00000156011				169	0	0	142	33	18.8571
ZNF395	0	genome.wustl.edu	37	8	28209225	28209226	+	In_Frame_Ins	INS	-	-	GCA			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	8	28209225	28209226	-	GCA	INS	ZNF395	ENST00000344423	human	ensembl	74_37	-1	known	in_frame_ins	c.1020_1019	p.342in_frame_insA	0.001:0.082	NULL	pfscan_Znf_C2H2	-	no_errors	ZNF395	HGNC	ENSG00000186918				185	0	0	172	28	14
WRN	0	genome.wustl.edu	37	8	31001132	31001132	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	8	31001132	31001132	A	-	DEL	WRN	ENST00000298139	human	ensembl	74_37	+1	known	frame_shift_del	c.3376	p.S1128fs	0.872	NULL	pfam_3'-5'_exonuclease_dom,pfam_Helicase_C,pfam_RQC_domain,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_HRDC_dom,superfamily_P-loop_NTPase,superfamily_RNaseH-like_dom,superfamily_HRDC-like,smart_3'-5'_exonuclease_dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_RQC_domain,smart_HRDC_dom,pfscan_HRDC_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ	-	no_errors	WRN	HGNC	ENSG00000165392				103	1	0.961538	136	11	7.48299
NRG1	0	genome.wustl.edu	37	8	32607050	32607050	+	RNA	DEL	T	T	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	8	32607050	32607050	T	-	DEL	NRG1	ENST00000523681	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	NRG1	HGNC	ENSG00000157168				105	0	0	92	17	15.5963
PRKDC	0	genome.wustl.edu	37	8	48733302	48733302	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	8	48733302	48733302	T	-	DEL	PRKDC	ENST00000314191	human	ensembl	74_37	-1	known	frame_shift_del	c.9311	p.N3104fs	0.119	pfam_PIK-rel_kinase_FAT,pfscan_PIK_FAT	pfam_NUC194,pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PRKDC	HGNC	ENSG00000253729				13	0	0	4	3	42.8571
PREX2	0	genome.wustl.edu	37	8	68992721	68992721	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	8	68992721	68992721	T	-	DEL	PREX2	ENST00000288368	human	ensembl	74_37	+1	known	frame_shift_del	c.1686	p.S565fs	0.015	smart_DEP_dom,pfscan_DEP_dom	pfam_DH-domain,pfam_DEP_dom,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX2	HGNC	ENSG00000046889				101	0	0	95	16	14.4144
TRPA1	0	genome.wustl.edu	37	8	72958792	72958792	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	8	72958792	72958792	T	-	DEL	TRPA1	ENST00000262209	human	ensembl	74_37	-1	known	frame_shift_del	c.2017	p.T673fs	0.001	NULL	pfam_Ankyrin_rpt,pfam_Ion_trans_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	TRPA1	HGNC	ENSG00000104321				138	0	0	158	15	8.67052
KCNB2	0	genome.wustl.edu	37	8	73480397	73480397	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	8	73480397	73480397	A	-	DEL	KCNB2	ENST00000523207	human	ensembl	74_37	+1	known	frame_shift_del	c.428	p.E146fs	1.000	prints_K_chnl_volt-dep_Kv2	pfam_K_chnl_volt-dep_Kv2,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv2.2,prints_K_chnl_volt-dep_Kv2,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv8	-	no_errors	KCNB2	HGNC	ENSG00000182674				184	0	0	147	22	13.0178
ZFHX4	0	genome.wustl.edu	37	8	77763477	77763477	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	8	77763477	77763477	A	-	DEL	ZFHX4	ENST00000521891	human	ensembl	74_37	+1	known	frame_shift_del	c.4320	p.K1442fs	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656				45	0	0	35	5	12.5
LRRCC1	0	genome.wustl.edu	37	8	86041489	86041489	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	8	86041489	86041489	A	-	DEL	LRRCC1	ENST00000360375	human	ensembl	74_37	+1	known	frame_shift_del	c.1501	p.K502fs	1.000	NULL	pfam_Leu-rich_rpt,superfamily_Prefoldin	-	no_errors	LRRCC1	HGNC	ENSG00000133739				177	0	0	204	34	14.2857
KCNS2	0	genome.wustl.edu	37	8	99441338	99441339	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	8	99441338	99441339	-	G	INS	KCNS2	ENST00000287042	human	ensembl	74_37	+1	known	frame_shift_ins	c.1131_1132	p.D378fs	0.890:1.000	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl	pfam_T1-type_BTB,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv2	-	no_errors	KCNS2	HGNC	ENSG00000156486				137	0	0	120	15	11.1111
ZNF462	0	genome.wustl.edu	37	9	109689690	109689690	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	9	109689690	109689690	C	-	DEL	ZNF462	ENST00000457913	human	ensembl	74_37	+1	known	frame_shift_del	c.3497	p.R1168fs	0.994	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF462	HGNC	ENSG00000148143				234	0	0	164	41	20
RGS3	0	genome.wustl.edu	37	9	116356322	116356323	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	9	116356322	116356323	-	T	INS	RGS3	ENST00000462403	human	ensembl	74_37	+1	known	frame_shift_ins	c.123_124	p.P44fs	0.005:0.003	NULL	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS3	HGNC	ENSG00000138835				341	0	0	302	40	11.6959
GAPVD1	0	genome.wustl.edu	37	9	128104522	128104522	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	9	128104522	128104522	A	-	DEL	GAPVD1	ENST00000394105	human	ensembl	74_37	+1	known	frame_shift_del	c.3071	p.K1025fs	1.000	NULL	pfam_RasGAP,pfam_VPS9,superfamily_Rho_GTPase_activation_prot,smart_VPS9_subgr,pfscan_VPS9,pfscan_RasGAP	-	no_errors	GAPVD1	HGNC	ENSG00000165219				133	0	0	101	29	22.3077
C9orf50	0	genome.wustl.edu	37	9	132382823	132382823	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	9	132382823	132382823	G	-	DEL	C9orf50	ENST00000372478	human	ensembl	74_37	-1	known	frame_shift_del	c.31	p.Q11fs	0.080	NULL	NULL	-	no_errors	C9orf50	HGNC	ENSG00000179058				21	0	0	21	6	22.2222
PRRC2B	0	genome.wustl.edu	37	9	134351425	134351425	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	9	134351425	134351425	C	-	DEL	PRRC2B	ENST00000357304	human	ensembl	74_37	+1	known	frame_shift_del	c.3909	p.P1305fs	0.911	NULL	pfam_BAT2_N	-	no_errors	PRRC2B	HGNC	ENSG00000130723				200	0	0	176	20	10.2041
SETX	0	genome.wustl.edu	37	9	135158548	135158549	+	RNA	DEL	AA	AA	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	9	135158548	135158549	AA	-	DEL	SETX	ENST00000474172	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.010:0.003	-	-	-	no_errors	SETX	HGNC	ENSG00000107290				20	0	0	11	6	35.2941
BRD3	0	genome.wustl.edu	37	9	136918529	136918529	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	9	136918529	136918529	G	-	DEL	BRD3	ENST00000303407	human	ensembl	74_37	-1	known	frame_shift_del	c.71	p.P24fs	1.000	superfamily_Bromodomain	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	BRD3	HGNC	ENSG00000169925				84	0	0	64	14	17.9487
PNPLA7	0	genome.wustl.edu	37	9	140356678	140356679	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	9	140356678	140356679	-	G	INS	PNPLA7	ENST00000406427	human	ensembl	74_37	-1	known	frame_shift_ins	c.3598_3597	p.I1199fs	1.000:1.000	superfamily_Acyl_Trfase/lysoPLipase	pfam_cNMP-bd_dom,pfam_Patatin/PLipase_A2-rel,superfamily_Acyl_Trfase/lysoPLipase,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	PNPLA7	HGNC	ENSG00000130653				58	0	0	47	7	12.963
FREM1	0	genome.wustl.edu	37	9	14842654	14842654	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	9	14842654	14842654	C	-	DEL	FREM1	ENST00000380881	human	ensembl	74_37	-1	known	frame_shift_del	c.1401	p.F470fs	0.953	NULL	pfam_C-type_lectin,pfam_Calx_beta,superfamily_C-type_lectin_fold,superfamily_Cadherin-like,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	FREM1	HGNC	ENSG00000164946				94	0	0	89	16	15.2381
CNTLN	0	genome.wustl.edu	37	9	17484353	17484353	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	9	17484353	17484353	A	-	DEL	CNTLN	ENST00000380647	human	ensembl	74_37	+1	known	frame_shift_del	c.3916	p.M1308fs	0.999	NULL	superfamily_Prefoldin	-	no_errors	CNTLN	HGNC	ENSG00000044459				150	0	0	147	30	16.9492
ENSG00000272842	0	genome.wustl.edu	37	9	19371687	19371688	+	RNA	INS	-	-	A			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	9	19371687	19371688	-	A	INS	ENSG00000272842	ENST00000609609	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.095:0.000	-	-	-	no_errors	RP11-513M16.7	Clone_based_vega_gene	ENSG00000272842				25	0	0	19	4	17.3913
MLLT3	0	genome.wustl.edu	37	9	20622295	20622295	+	RNA	DEL	C	C	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	9	20622295	20622295	C	-	DEL	MLLT3	ENST00000475957	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MLLT3	HGNC	ENSG00000171843				29	0	0	26	2	7.14286
APBA1	0	genome.wustl.edu	37	9	72047493	72047493	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	9	72047493	72047493	G	-	DEL	APBA1	ENST00000265381	human	ensembl	74_37	-1	known	frame_shift_del	c.2401	p.H801fs	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PTB/PI_dom,pfam_PDZ,superfamily_PDZ,smart_PTB/PI_dom,smart_PDZ,pfscan_PDZ,pfscan_PTB/PI_dom	-	no_errors	APBA1	HGNC	ENSG00000107282				60	0	0	54	5	8.47458
FGD3	0	genome.wustl.edu	37	9	95738900	95738900	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	9	95738900	95738900	C	-	DEL	FGD3	ENST00000337352	human	ensembl	74_37	+1	known	frame_shift_del	c.362	p.Q123fs	0.000	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Znf_FYVE,superfamily_DH-domain,superfamily_Znf_FYVE_PHD,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD3	HGNC	ENSG00000127084				74	0	0	57	6	9.52381
PHF2	0	genome.wustl.edu	37	9	96422612	96422612	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	9	96422612	96422612	A	-	DEL	PHF2	ENST00000359246	human	ensembl	74_37	+1	known	frame_shift_del	c.1468	p.K492fs	1.000	NULL	pfam_JmjC_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_JmjC_dom,pfscan_JmjC_dom,pfscan_Znf_PHD-finger	-	no_errors	PHF2	HGNC	ENSG00000197724				19	0	0	19	9	32.1429
TAF7L	0	genome.wustl.edu	37	X	100533995	100533996	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	X	100533995	100533996	-	T	INS	TAF7L	ENST00000372907	human	ensembl	74_37	-1	known	frame_shift_ins	c.749_748	p.S250fs	0.000:0.001	pfam_TAFII55_prot_cons_reg	pfam_TAFII55_prot_cons_reg	-	no_errors	TAF7L	HGNC	ENSG00000102387				222	0	0	216	37	14.6245
BHLHB9	0	genome.wustl.edu	37	X	102003967	102003967	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	X	102003967	102003967	A	-	DEL	BHLHB9	ENST00000361229	human	ensembl	74_37	+1	known	frame_shift_del	c.44	p.K17fs	0.000	NULL	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	-	no_errors	BHLHB9	HGNC	ENSG00000198908				118	0	0	107	8	6.95652
AGTR2	0	genome.wustl.edu	37	X	115303928	115303928	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	X	115303928	115303928	T	-	DEL	AGTR2	ENST00000371906	human	ensembl	74_37	+1	known	frame_shift_del	c.395	p.F134fs	1.000	pfam_GPCR_Rhodpsn,prints_GPCR_Rhodpsn,prints_ATII_rcpt,prints_Chemokine_rcpt,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,prints_ATII_AT2_rcpt,prints_GPCR_Rhodpsn,prints_ATII_rcpt,prints_Brdyknn_rcpt,prints_Chemokine_rcpt,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	AGTR2	HGNC	ENSG00000180772				335	1	0.297619	276	53	16.1094
SMARCA1	0	genome.wustl.edu	37	X	128605245	128605245	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	X	128605245	128605245	T	-	DEL	SMARCA1	ENST00000371122	human	ensembl	74_37	-1	known	frame_shift_del	c.2501	p.K834fs	1.000	pfam_ISWI_HAND-dom,superfamily_ISWI_HAND-dom	pfam_SNF2_N,pfam_SLIDE,pfam_ISWI_HAND-dom,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,superfamily_Homeodomain-like,superfamily_ISWI_HAND-dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_SANT/Myb,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SMARCA1	HGNC	ENSG00000102038				210	0	0	187	37	16.5179
USP26	0	genome.wustl.edu	37	X	132160788	132160788	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	X	132160788	132160788	A	-	DEL	USP26	ENST00000370832	human	ensembl	74_37	-1	known	frame_shift_del	c.1461	p.F487fs	0.033	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP26	HGNC	ENSG00000134588				319	0	0	258	38	12.8378
FGF13	0	genome.wustl.edu	37	X	137939822	137939823	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	X	137939822	137939823	-	G	INS	FGF13	ENST00000370603	human	ensembl	74_37	-1	known	frame_shift_ins	c.69_68	p.G24fs	1.000:1.000	NULL	pfam_Fibroblast_GF_fam,superfamily_Cytokine_IL1-like,smart_Fibroblast_GF_fam,prints_IL-1_fam/FGF_fam,prints_Fibroblast_GF_fam	-	no_errors	FGF13	HGNC	ENSG00000129682				56	0	0	45	12	21.0526
MECP2	0	genome.wustl.edu	37	X	153296568	153296569	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	X	153296568	153296569	-	C	INS	MECP2	ENST00000303391	human	ensembl	74_37	-1	known	frame_shift_ins	c.711_710	p.G238fs	0.305:0.687	superfamily_Ig_E-set,pirsf_Me_CpG-bd_MeCP2	pfam_Methyl_CpG_DNA-bd,superfamily_DNA-bd_dom,superfamily_Ig_E-set,smart_Methyl_CpG_DNA-bd,pirsf_Me_CpG-bd_MeCP2,pfscan_Methyl_CpG_DNA-bd	-	no_errors	MECP2	HGNC	ENSG00000169057				255	1	0.390625	185	31	14.3519
ASB11	0	genome.wustl.edu	37	X	15333633	15333633	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	X	15333633	15333633	A	-	DEL	ASB11	ENST00000480796	human	ensembl	74_37	-1	known	frame_shift_del	c.95	p.L32fs	1.000	NULL	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C	-	no_errors	ASB11	HGNC	ENSG00000165192				126	0	0	132	7	5.03597
FUNDC2	0	genome.wustl.edu	37	X	154274835	154274835	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	X	154274835	154274835	G	-	DEL	FUNDC2	ENST00000369498	human	ensembl	74_37	+1	known	frame_shift_del	c.336	p.G113fs	0.984	pfam_FUN14	pfam_FUN14	-	no_errors	FUNDC2	HGNC	ENSG00000165775				213	0	0	164	21	11.3514
AKAP17A	0	genome.wustl.edu	37	X	1712781	1712781	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	X	1712781	1712781	G	-	DEL	AKAP17A	ENST00000313871	human	ensembl	74_37	+1	known	frame_shift_del	c.426	p.E144fs	0.965	NULL	NULL	-	no_errors	AKAP17A	HGNC	ENSG00000197976				396	0	0	316	34	9.71429
PPEF1	0	genome.wustl.edu	37	X	18779674	18779675	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	X	18779674	18779675	-	T	INS	PPEF1	ENST00000361511	human	ensembl	74_37	+1	known	frame_shift_ins	c.538_539	p.L182fs	0.387:0.380	pfam_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase,pirsf_Ser/Thr-Pase_EF-hand_contain,prints_Ser/Thr-sp_prot-phosphatase	pfam_PEstase_dom,pfam_EF_hand_dom,pfam_PPP_dom,pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,smart_Ser/Thr-sp_prot-phosphatase,smart_EF_hand_dom,pirsf_Ser/Thr-Pase_EF-hand_contain,pfscan_EF_hand_dom,pfscan_IQ_motif_EF-hand-BS,prints_Ser/Thr-sp_prot-phosphatase	-	no_errors	PPEF1	HGNC	ENSG00000086717				146	0	0	133	17	11.3333
PHEX	0	genome.wustl.edu	37	X	22112144	22112144	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	X	22112144	22112144	T	-	DEL	PHEX	ENST00000379374	human	ensembl	74_37	+1	known	frame_shift_del	c.776	p.L260fs	1.000	pfam_Peptidase_M13_N	pfam_Peptidase_M13_N,pfam_Peptidase_M13_C,prints_Peptidase_M13_C	-	no_errors	PHEX	HGNC	ENSG00000102174				143	0	0	123	21	14.5833
EIF2S3	0	genome.wustl.edu	37	X	24091437	24091437	+	RNA	DEL	A	A	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	X	24091437	24091437	A	-	DEL	EIF2S3	ENST00000460032	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	EIF2S3	HGNC	ENSG00000130741				32	0	0	20	6	23.0769
RBM10	0	genome.wustl.edu	37	X	47030467	47030469	+	In_Frame_Del	DEL	GGC	GGC	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	GGC	GGC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	X	47030467	47030469	GGC	-	DEL	RBM10	ENST00000377604	human	ensembl	74_37	+1	known	in_frame_del	c.242_244	p.R85in_frame_del	1.000:1.000:1.000	NULL	pfam_G_patch_dom,pfam_RRM_dom,pfam_Znf_RanBP2,smart_RRM_dom,smart_Znf_RanBP2,smart_G_patch_dom,pfscan_Znf_RanBP2,pfscan_Znf_C2H2,pfscan_G_patch_dom,pfscan_RRM_dom	-	no_errors	RBM10	HGNC	ENSG00000182872				59	0	0	47	7	12.963
MAP2K4P1	0	genome.wustl.edu	37	X	72744763	72744763	+	RNA	DEL	T	T	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	X	72744763	72744763	T	-	DEL	MAP2K4P1	ENST00000602584	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.995	-	-	-	no_errors	MAP2K4P1	HGNC	ENSG00000269904				36	0	0	20	5	20
ATRX	0	genome.wustl.edu	37	X	76907782	76907784	+	In_Frame_Del	DEL	TCC	TCC	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	TCC	TCC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	X	76907782	76907784	TCC	-	DEL	ATRX	ENST00000373344	human	ensembl	74_37	-1	known	in_frame_del	c.4379_4377	p.E1463in_frame_del	0.844:0.838:0.239	NULL	pfam_SNF2_N,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Znf_FYVE_PHD,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ATRX	HGNC	ENSG00000085224				190	0	0	188	10	5.05051
FAM9A	0	genome.wustl.edu	37	X	8764320	8764320	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	X	8764320	8764320	T	-	DEL	FAM9A	ENST00000381003	human	ensembl	74_37	-1	known	frame_shift_del	c.477	p.K159fs	0.007	NULL	NULL	-	no_errors	FAM9A	HGNC	ENSG00000183304				28	0	0	31	6	16.2162
SHROOM2	0	genome.wustl.edu	37	X	9900744	9900744	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-6852-01A-11D-1882-08	TCGA-BR-6852-10A-01D-1882-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f6202ce-fb91-4f83-9730-d202b75ea0ec	a2afd338-d1be-4d45-9492-fb7ddf655adb	X	9900744	9900744	G	-	DEL	SHROOM2	ENST00000380913	human	ensembl	74_37	+1	known	frame_shift_del	c.3421	p.D1142fs	0.000	NULL	pfam_ASD2,pfam_ASD1,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM2	HGNC	ENSG00000146950				83	0	0	59	5	7.8125
