Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
TAS1R3	0	genome.wustl.edu	37	1	1268156	1268156	+	Silent	SNP	C	C	T			TCGA-BR-7196-01A-11D-2053-08	TCGA-BR-7196-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fd3a3c08-528b-44e9-bd44-1b6c48248baa	8627b3c5-c183-425c-96a0-c86a4ac4de83	1	1268156	1268156	C	T	SNP	TAS1R3	ENST00000339381	human	ensembl	74_37	+1	known	silent	c.1245	p.C415	0.367	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3	-	no_errors	TAS1R3	HGNC	ENSG00000169962				46	0	0	46	4	8
PLEKHM2	0	genome.wustl.edu	37	1	16059105	16059105	+	Splice_Site	SNP	A	A	C			TCGA-BR-7196-01A-11D-2053-08	TCGA-BR-7196-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fd3a3c08-528b-44e9-bd44-1b6c48248baa	8627b3c5-c183-425c-96a0-c86a4ac4de83	1	16059105	16059105	A	C	SNP	PLEKHM2	ENST00000375799	human	ensembl	74_37	+1	known	splice_site	c.2806-2	e19-2	1.000	-	-	-	no_errors	PLEKHM2	HGNC	ENSG00000116786				13	0	0	16	3	15.7895
USP48	0	genome.wustl.edu	37	1	22030758	22030758	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7196-01A-11D-2053-08	TCGA-BR-7196-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fd3a3c08-528b-44e9-bd44-1b6c48248baa	8627b3c5-c183-425c-96a0-c86a4ac4de83	1	22030758	22030758	G	A	SNP	USP48	ENST00000308271	human	ensembl	74_37	-1	known	missense	c.2512	p.P838S	1.000	NULL	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67,pfscan_Ubiquitin_supergroup	-	no_errors	USP48	HGNC	ENSG00000090686				55	0	0	52	9	14.7541
EXO1	0	genome.wustl.edu	37	1	242045261	242045261	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-7196-01A-11D-2053-08	TCGA-BR-7196-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fd3a3c08-528b-44e9-bd44-1b6c48248baa	8627b3c5-c183-425c-96a0-c86a4ac4de83	1	242045261	242045261	A	T	SNP	EXO1	ENST00000348581	human	ensembl	74_37	+1	known	missense	c.2153	p.Q718L	0.008	NULL	pfam_XPG-I_dom,pfam_XPG_DNA_repair_N,superfamily_5-3_exonuclease_C,smart_XPG_DNA_repair_N,smart_XPG-I_dom,smart_HhH2,prints_XPG/Rad2	-	no_errors	EXO1	HGNC	ENSG00000174371				67	0	0	50	7	12.2807
ARID1A	0	genome.wustl.edu	37	1	27097694	27097694	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-7196-01A-11D-2053-08	TCGA-BR-7196-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fd3a3c08-528b-44e9-bd44-1b6c48248baa	8627b3c5-c183-425c-96a0-c86a4ac4de83	1	27097694	27097694	C	T	SNP	ARID1A	ENST00000324856	human	ensembl	74_37	+1	known	nonsense	c.3283	p.Q1095*	1.000	pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1A	HGNC	ENSG00000117713				59	0	0	61	8	11.5942
MYO3A	0	genome.wustl.edu	37	10	26482184	26482184	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7196-01A-11D-2053-08	TCGA-BR-7196-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fd3a3c08-528b-44e9-bd44-1b6c48248baa	8627b3c5-c183-425c-96a0-c86a4ac4de83	10	26482184	26482184	C	T	SNP	MYO3A	ENST00000265944	human	ensembl	74_37	+1	known	missense	c.4489	p.R1497W	1.000	NULL	pfam_Myosin_head_motor_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_Prot_kinase_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO3A	HGNC	ENSG00000095777				53	0	0	36	6	14.2857
AGAP10	0	genome.wustl.edu	37	10	47207813	47207813	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7196-01A-11D-2053-08	TCGA-BR-7196-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fd3a3c08-528b-44e9-bd44-1b6c48248baa	8627b3c5-c183-425c-96a0-c86a4ac4de83	10	47207813	47207813	T	C	SNP	AGAP10	ENST00000413193	human	ensembl	74_37	-1	known	missense	c.683	p.H228R	1.000	NULL	pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_Pleckstrin_homology,smart_ArfGAP,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	AGAP10	HGNC	ENSG00000204172				18	0	0	27	5	15.625
PANK1	0	genome.wustl.edu	37	10	91371722	91371722	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-7196-01A-11D-2053-08	TCGA-BR-7196-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fd3a3c08-528b-44e9-bd44-1b6c48248baa	8627b3c5-c183-425c-96a0-c86a4ac4de83	10	91371722	91371722	C	A	SNP	PANK1	ENST00000307534	human	ensembl	74_37	-1	known	nonsense	c.787	p.E263*	1.000	pfam_Type_II_PanK,tigrfam_Type_II_PanK	pfam_Type_II_PanK,tigrfam_Type_II_PanK	-	no_errors	PANK1	HGNC	ENSG00000152782				94	0	0	94	10	9.61538
BDNF	0	genome.wustl.edu	37	11	27679732	27679732	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7196-01A-11D-2053-08	TCGA-BR-7196-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fd3a3c08-528b-44e9-bd44-1b6c48248baa	8627b3c5-c183-425c-96a0-c86a4ac4de83	11	27679732	27679732	C	T	SNP	BDNF	ENST00000438929	human	ensembl	74_37	-1	known	missense	c.626	p.R209Q	1.000	NULL	pfam_Nerve_growth_factor-rel,smart_Nerve_growth_factor-rel,pfscan_Nerve_growth_factor-rel,prints_Brain-der_neurotrophic_factor,prints_Nerve_growth_factor-rel	-	no_errors	BDNF	HGNC	ENSG00000176697				74	0	0	71	10	12.3457
CTNND1	0	genome.wustl.edu	37	11	57575682	57575682	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-7196-01A-11D-2053-08	TCGA-BR-7196-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fd3a3c08-528b-44e9-bd44-1b6c48248baa	8627b3c5-c183-425c-96a0-c86a4ac4de83	11	57575682	57575682	C	A	SNP	CTNND1	ENST00000399050	human	ensembl	74_37	+1	known	nonsense	c.2009	p.S670*	1.000	superfamily_ARM-type_fold,smart_Armadillo	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	CTNND1	HGNC	ENSG00000198561				28	0	0	31	4	11.4286
BTBD11	0	genome.wustl.edu	37	12	108010928	108010928	+	Silent	SNP	G	G	A			TCGA-BR-7196-01A-11D-2053-08	TCGA-BR-7196-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fd3a3c08-528b-44e9-bd44-1b6c48248baa	8627b3c5-c183-425c-96a0-c86a4ac4de83	12	108010928	108010928	G	A	SNP	BTBD11	ENST00000280758	human	ensembl	74_37	+1	known	silent	c.2064	p.S688	0.006	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_BTB_POZ,superfamily_BTB/POZ_fold,superfamily_Ankyrin_rpt-contain_dom,superfamily_Histone-fold,smart_Ankyrin_rpt,smart_BTB/POZ-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_BTB/POZ-like	-	no_errors	BTBD11	HGNC	ENSG00000151136				97	0	0	77	13	14.4444
CCDC60	0	genome.wustl.edu	37	12	119926657	119926657	+	Silent	SNP	C	C	T			TCGA-BR-7196-01A-11D-2053-08	TCGA-BR-7196-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fd3a3c08-528b-44e9-bd44-1b6c48248baa	8627b3c5-c183-425c-96a0-c86a4ac4de83	12	119926657	119926657	C	T	SNP	CCDC60	ENST00000327554	human	ensembl	74_37	+1	known	silent	c.543	p.T181	1.000	NULL	NULL	-	no_errors	CCDC60	HGNC	ENSG00000183273				106	0	0	95	19	16.6667
HNF1A	0	genome.wustl.edu	37	12	121435302	121435302	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7196-01A-11D-2053-08	TCGA-BR-7196-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fd3a3c08-528b-44e9-bd44-1b6c48248baa	8627b3c5-c183-425c-96a0-c86a4ac4de83	12	121435302	121435302	T	G	SNP	HNF1A	ENST00000257555	human	ensembl	74_37	+1	known	missense	c.1335	p.S445R	0.180	pfam_HNF1b_C	pfam_HNF1b_C,pfam_HNF-1_N,pfam_HNF1a_C,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,superfamily_HNF1_dimer_dom,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	HNF1A	HGNC	ENSG00000135100				61	0	0	39	3	7.14286
NCOR2	0	genome.wustl.edu	37	12	124841237	124841237	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7196-01A-11D-2053-08	TCGA-BR-7196-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fd3a3c08-528b-44e9-bd44-1b6c48248baa	8627b3c5-c183-425c-96a0-c86a4ac4de83	12	124841237	124841237	C	A	SNP	NCOR2	ENST00000356219	human	ensembl	74_37	-1	known	missense	c.3213	p.K1071N	0.999	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR2	HGNC	ENSG00000196498				25	0	0	21	2	8.69565
ADAMTS20	0	genome.wustl.edu	37	12	43771289	43771289	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7196-01A-11D-2053-08	TCGA-BR-7196-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fd3a3c08-528b-44e9-bd44-1b6c48248baa	8627b3c5-c183-425c-96a0-c86a4ac4de83	12	43771289	43771289	T	G	SNP	ADAMTS20	ENST00000389420	human	ensembl	74_37	-1	known	missense	c.4874	p.K1625T	0.000	superfamily_Thrombospondin_1_rpt	pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS20	HGNC	ENSG00000173157				31	0	0	35	5	12.5
MON2	0	genome.wustl.edu	37	12	62943575	62943575	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7196-01A-11D-2053-08	TCGA-BR-7196-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fd3a3c08-528b-44e9-bd44-1b6c48248baa	8627b3c5-c183-425c-96a0-c86a4ac4de83	12	62943575	62943575	G	C	SNP	MON2	ENST00000393630	human	ensembl	74_37	+1	known	missense	c.2884	p.E962Q	1.000	superfamily_ARM-type_fold	pfam_DUF1981_Sec7_assoc,superfamily_ARM-type_fold	-	no_errors	MON2	HGNC	ENSG00000061987				56	0	0	58	5	7.93651
CD163	0	genome.wustl.edu	37	12	7651576	7651576	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7196-01A-11D-2053-08	TCGA-BR-7196-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fd3a3c08-528b-44e9-bd44-1b6c48248baa	8627b3c5-c183-425c-96a0-c86a4ac4de83	12	7651576	7651576	C	G	SNP	CD163	ENST00000359156	human	ensembl	74_37	-1	known	missense	c.666	p.W222C	1.000	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,prints_SRCR,pfscan_SRCR	-	no_errors	CD163	HGNC	ENSG00000177575				159	0	0	160	14	8.04598
WNK1	0	genome.wustl.edu	37	12	939261	939261	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7196-01A-11D-2053-08	TCGA-BR-7196-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fd3a3c08-528b-44e9-bd44-1b6c48248baa	8627b3c5-c183-425c-96a0-c86a4ac4de83	12	939261	939261	G	A	SNP	WNK1	ENST00000530271	human	ensembl	74_37	+1	known	missense	c.1246	p.A416T	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	WNK1	HGNC	ENSG00000060237				89	0	0	56	13	18.8406
SLITRK5	0	genome.wustl.edu	37	13	88328641	88328641	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7196-01A-11D-2053-08	TCGA-BR-7196-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fd3a3c08-528b-44e9-bd44-1b6c48248baa	8627b3c5-c183-425c-96a0-c86a4ac4de83	13	88328641	88328641	G	A	SNP	SLITRK5	ENST00000325089	human	ensembl	74_37	+1	known	missense	c.998	p.G333E	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK5	HGNC	ENSG00000165300				123	0	0	99	10	9.17431
MIR329-1	0	genome.wustl.edu	37	14	101493161	101493161	+	RNA	SNP	A	A	T			TCGA-BR-7196-01A-11D-2053-08	TCGA-BR-7196-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fd3a3c08-528b-44e9-bd44-1b6c48248baa	8627b3c5-c183-425c-96a0-c86a4ac4de83	14	101493161	101493161	A	T	SNP	MIR329-1	ENST00000385028	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.991	-	-	-	no_errors	MIR329-1	HGNC	ENSG00000207761				118	0	0	95	5	5
HSP90AA1	0	genome.wustl.edu	37	14	102551035	102551035	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7196-01A-11D-2053-08	TCGA-BR-7196-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fd3a3c08-528b-44e9-bd44-1b6c48248baa	8627b3c5-c183-425c-96a0-c86a4ac4de83	14	102551035	102551035	C	T	SNP	HSP90AA1	ENST00000334701	human	ensembl	74_37	-1	known	missense	c.1330	p.D444N	1.000	pirsf_Hsp90_fam,pfam_Hsp90_fam,superfamily_Ribosomal_S5_D2-typ_fold	pirsf_Hsp90_fam,pfam_Hsp90_fam,pfam_HATPase_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_HATPase_ATP-bd,smart_HATPase_ATP-bd,prints_Hsp90_N	-	no_errors	HSP90AA1	HGNC	ENSG00000080824				155	0	0	135	10	6.89655
AHNAK2	0	genome.wustl.edu	37	14	105415147	105415147	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7196-01A-11D-2053-08	TCGA-BR-7196-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fd3a3c08-528b-44e9-bd44-1b6c48248baa	8627b3c5-c183-425c-96a0-c86a4ac4de83	14	105415147	105415147	G	A	SNP	AHNAK2	ENST00000333244	human	ensembl	74_37	-1	known	missense	c.6641	p.A2214V	0.002	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567				140	0	0	108	10	8.47458
TEP1	0	genome.wustl.edu	37	14	20852247	20852247	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7196-01A-11D-2053-08	TCGA-BR-7196-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fd3a3c08-528b-44e9-bd44-1b6c48248baa	8627b3c5-c183-425c-96a0-c86a4ac4de83	14	20852247	20852247	T	C	SNP	TEP1	ENST00000262715	human	ensembl	74_37	-1	known	missense	c.3484	p.R1162G	1.000	superfamily_P-loop_NTPase,pfscan_NACHT_NTPase	pfam_TROVE,pfam_TEP1_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_P-loop_NTPase,smart_WD40_repeat,pfscan_NACHT_NTPase,pfscan_TROVE,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TEP1	HGNC	ENSG00000129566				83	0	0	51	10	16.3934
CLEC14A	0	genome.wustl.edu	37	14	38724436	38724436	+	Silent	SNP	G	G	A			TCGA-BR-7196-01A-11D-2053-08	TCGA-BR-7196-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fd3a3c08-528b-44e9-bd44-1b6c48248baa	8627b3c5-c183-425c-96a0-c86a4ac4de83	14	38724436	38724436	G	A	SNP	CLEC14A	ENST00000342213	human	ensembl	74_37	-1	known	silent	c.792	p.D264	0.002	NULL	superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	CLEC14A	HGNC	ENSG00000176435				170	0	0	162	11	6.35838
UNKL	0	genome.wustl.edu	37	16	1417222	1417222	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7196-01A-11D-2053-08	TCGA-BR-7196-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fd3a3c08-528b-44e9-bd44-1b6c48248baa	8627b3c5-c183-425c-96a0-c86a4ac4de83	16	1417222	1417222	C	A	SNP	UNKL	ENST00000402641	human	ensembl	74_37	-1	known	missense	c.414	p.E138D	0.998	NULL	pfscan_Znf_RING	-	no_errors	UNKL	HGNC	ENSG00000059145				18	0	0	14	2	12.5
ABCA3	0	genome.wustl.edu	37	16	2331442	2331442	+	Silent	SNP	G	G	A			TCGA-BR-7196-01A-11D-2053-08	TCGA-BR-7196-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fd3a3c08-528b-44e9-bd44-1b6c48248baa	8627b3c5-c183-425c-96a0-c86a4ac4de83	16	2331442	2331442	G	A	SNP	ABCA3	ENST00000301732	human	ensembl	74_37	-1	known	silent	c.4104	p.I1368	0.992	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA3	HGNC	ENSG00000167972				95	0	0	90	6	6.25
LCMT1	0	genome.wustl.edu	37	16	25137355	25137355	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7196-01A-11D-2053-08	TCGA-BR-7196-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fd3a3c08-528b-44e9-bd44-1b6c48248baa	8627b3c5-c183-425c-96a0-c86a4ac4de83	16	25137355	25137355	C	G	SNP	LCMT1	ENST00000380962	human	ensembl	74_37	+1	known	missense	c.184	p.L62V	0.003	NULL	NULL	-	no_errors	LCMT1	HGNC	ENSG00000205629				27	0	0	13	5	27.7778
PRRT2	0	genome.wustl.edu	37	16	29825054	29825054	+	Silent	SNP	C	C	A			TCGA-BR-7196-01A-11D-2053-08	TCGA-BR-7196-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fd3a3c08-528b-44e9-bd44-1b6c48248baa	8627b3c5-c183-425c-96a0-c86a4ac4de83	16	29825054	29825054	C	A	SNP	PRRT2	ENST00000567659	human	ensembl	74_37	+1	known	silent	c.679	p.R227	0.013	NULL	pfam_CD225/Dispanin_fam	-	no_errors	PRRT2	HGNC	ENSG00000167371				18	0	0	17	2	10.5263
BCL7C	0	genome.wustl.edu	37	16	30903924	30903924	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7196-01A-11D-2053-08	TCGA-BR-7196-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fd3a3c08-528b-44e9-bd44-1b6c48248baa	8627b3c5-c183-425c-96a0-c86a4ac4de83	16	30903924	30903924	C	T	SNP	BCL7C	ENST00000380317	human	ensembl	74_37	-1	known	missense	c.425	p.R142Q	0.006	NULL	pfam_BCL7	-	no_errors	BCL7C	HGNC	ENSG00000099385				41	0	0	26	4	13.3333
CNTNAP4	0	genome.wustl.edu	37	16	76486648	76486648	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7196-01A-11D-2053-08	TCGA-BR-7196-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fd3a3c08-528b-44e9-bd44-1b6c48248baa	8627b3c5-c183-425c-96a0-c86a4ac4de83	16	76486648	76486648	C	T	SNP	CNTNAP4	ENST00000307431	human	ensembl	74_37	+1	known	missense	c.1312	p.P438S	0.998	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP4	HGNC	ENSG00000152910				22	0	0	26	2	7.14286
CAMKK1	0	genome.wustl.edu	37	17	3787704	3787704	+	Silent	SNP	G	G	A			TCGA-BR-7196-01A-11D-2053-08	TCGA-BR-7196-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fd3a3c08-528b-44e9-bd44-1b6c48248baa	8627b3c5-c183-425c-96a0-c86a4ac4de83	17	3787704	3787704	G	A	SNP	CAMKK1	ENST00000381771	human	ensembl	74_37	-1	known	silent	c.378	p.N126	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CAMKK1	HGNC	ENSG00000004660				222	0	0	180	13	6.73575
CCR7	0	genome.wustl.edu	37	17	38711207	38711207	+	Silent	SNP	G	G	A			TCGA-BR-7196-01A-11D-2053-08	TCGA-BR-7196-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fd3a3c08-528b-44e9-bd44-1b6c48248baa	8627b3c5-c183-425c-96a0-c86a4ac4de83	17	38711207	38711207	G	A	SNP	CCR7	ENST00000246657	human	ensembl	74_37	-1	known	silent	c.924	p.Y308	0.002	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Chemokine_CCR7,prints_GPCR_Rhodpsn,prints_Chemokine_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Chemokine_CCR7,prints_GPCR_Rhodpsn,prints_Chemokine_rcpt,prints_Chemokine_CXCR4,prints_Chemokine_CCRL1	-	no_errors	CCR7	HGNC	ENSG00000126353				71	0	0	50	15	23.0769
RNF167	0	genome.wustl.edu	37	17	4848302	4848302	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7196-01A-11D-2053-08	TCGA-BR-7196-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fd3a3c08-528b-44e9-bd44-1b6c48248baa	8627b3c5-c183-425c-96a0-c86a4ac4de83	17	4848302	4848302	C	G	SNP	RNF167	ENST00000262482	human	ensembl	74_37	+1	known	missense	c.1044	p.I348M	0.000	NULL	pfam_Protease-assoc_domain,pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF167	HGNC	ENSG00000108523				238	0	0	191	12	5.91133
BCAS3	0	genome.wustl.edu	37	17	59155713	59155713	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7196-01A-11D-2053-08	TCGA-BR-7196-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fd3a3c08-528b-44e9-bd44-1b6c48248baa	8627b3c5-c183-425c-96a0-c86a4ac4de83	17	59155713	59155713	C	T	SNP	BCAS3	ENST00000390652	human	ensembl	74_37	+1	known	missense	c.2195	p.T732I	1.000	pfam_BCAS3	pfam_BCAS3,pfam_WD40_repeat	-	no_errors	BCAS3	HGNC	ENSG00000141376				62	0	0	45	13	22.4138
ABCA10	0	genome.wustl.edu	37	17	67197769	67197769	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7196-01A-11D-2053-08	TCGA-BR-7196-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fd3a3c08-528b-44e9-bd44-1b6c48248baa	8627b3c5-c183-425c-96a0-c86a4ac4de83	17	67197769	67197769	C	A	SNP	ABCA10	ENST00000269081	human	ensembl	74_37	-1	known	missense	c.1047	p.K349N	1.000	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA10	HGNC	ENSG00000154263				52	0	0	65	6	8.4507
MIB1	0	genome.wustl.edu	37	18	19444574	19444574	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-7196-01A-11D-2053-08	TCGA-BR-7196-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fd3a3c08-528b-44e9-bd44-1b6c48248baa	8627b3c5-c183-425c-96a0-c86a4ac4de83	18	19444574	19444574	A	T	SNP	MIB1	ENST00000261537	human	ensembl	74_37	+1	known	missense	c.2968	p.S990C	1.000	smart_Znf_RING,pfscan_Znf_RING	pfam_Ankyrin_rpt,pfam_Mib_Herc2,pfam_Znf_ZZ,superfamily_Ankyrin_rpt-contain_dom,smart_Znf_ZZ,smart_Ankyrin_rpt,smart_Znf_RING,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Znf_RING,pfscan_Znf_ZZ,prints_Ankyrin_rpt	-	no_errors	MIB1	HGNC	ENSG00000101752				147	0	0	108	14	11.4754
DHPS	0	genome.wustl.edu	37	19	12790510	12790510	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-7196-01A-11D-2053-08	TCGA-BR-7196-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fd3a3c08-528b-44e9-bd44-1b6c48248baa	8627b3c5-c183-425c-96a0-c86a4ac4de83	19	12790510	12790510	T	A	SNP	DHPS	ENST00000210060	human	ensembl	74_37	-1	known	missense	c.518	p.N173I	1.000	pfam_Deoxyhypusine_synthase,tigrfam_Deoxyhypusine_synthase	pfam_Deoxyhypusine_synthase,tigrfam_Deoxyhypusine_synthase	-	no_errors	DHPS	HGNC	ENSG00000095059				209	0	0	158	38	19.3878
ZNF737	0	genome.wustl.edu	37	19	20728254	20728254	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7196-01A-11D-2053-08	TCGA-BR-7196-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fd3a3c08-528b-44e9-bd44-1b6c48248baa	8627b3c5-c183-425c-96a0-c86a4ac4de83	19	20728254	20728254	C	G	SNP	ZNF737	ENST00000427401	human	ensembl	74_37	-1	known	missense	c.755	p.S252T	0.994	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF737	HGNC	ENSG00000237440				51	0	0	40	3	6.97674
CYP2S1	0	genome.wustl.edu	37	19	41700606	41700606	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-7196-01A-11D-2053-08	TCGA-BR-7196-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fd3a3c08-528b-44e9-bd44-1b6c48248baa	8627b3c5-c183-425c-96a0-c86a4ac4de83	19	41700606	41700606	A	T	SNP	CYP2S1	ENST00000310054	human	ensembl	74_37	+1	known	missense	c.335	p.D112V	0.002	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-I_CYP2A-like,prints_Cyt_P450_E_grp-I_CYP2B-like,prints_Cyt_P450_B	-	no_errors	CYP2S1	HGNC	ENSG00000167600				70	0	0	53	4	7.01754
CEACAM5	0	genome.wustl.edu	37	19	42219758	42219758	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7196-01A-11D-2053-08	TCGA-BR-7196-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fd3a3c08-528b-44e9-bd44-1b6c48248baa	8627b3c5-c183-425c-96a0-c86a4ac4de83	19	42219758	42219758	C	T	SNP	CEACAM5	ENST00000221992	human	ensembl	74_37	+1	known	missense	c.893	p.T298M	0.075	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	CEACAM5	HGNC	ENSG00000105388				102	1	0.970874	88	25	22.1239
ZNF221	0	genome.wustl.edu	37	19	44470470	44470470	+	Silent	SNP	T	T	C			TCGA-BR-7196-01A-11D-2053-08	TCGA-BR-7196-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fd3a3c08-528b-44e9-bd44-1b6c48248baa	8627b3c5-c183-425c-96a0-c86a4ac4de83	19	44470470	44470470	T	C	SNP	ZNF221	ENST00000251269	human	ensembl	74_37	+1	known	silent	c.816	p.H272	0.025	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF221	HGNC	ENSG00000159905				188	0	0	182	33	15.3488
UHRF1	0	genome.wustl.edu	37	19	4929291	4929291	+	RNA	SNP	C	C	A			TCGA-BR-7196-01A-11D-2053-08	TCGA-BR-7196-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fd3a3c08-528b-44e9-bd44-1b6c48248baa	8627b3c5-c183-425c-96a0-c86a4ac4de83	19	4929291	4929291	C	A	SNP	UHRF1	ENST00000262952	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	UHRF1	HGNC	ENSG00000034063				80	0	0	69	7	9.21053
MYBPC2	0	genome.wustl.edu	37	19	50958504	50958504	+	Silent	SNP	T	T	C			TCGA-BR-7196-01A-11D-2053-08	TCGA-BR-7196-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fd3a3c08-528b-44e9-bd44-1b6c48248baa	8627b3c5-c183-425c-96a0-c86a4ac4de83	19	50958504	50958504	T	C	SNP	MYBPC2	ENST00000357701	human	ensembl	74_37	+1	known	silent	c.2154	p.A718	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	MYBPC2	HGNC	ENSG00000086967				184	0	0	185	33	15.1376
TUBA3E	0	genome.wustl.edu	37	2	130951688	130951688	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7196-01A-11D-2053-08	TCGA-BR-7196-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fd3a3c08-528b-44e9-bd44-1b6c48248baa	8627b3c5-c183-425c-96a0-c86a4ac4de83	2	130951688	130951688	G	A	SNP	TUBA3E	ENST00000312988	human	ensembl	74_37	-1	known	nonsense	c.727	p.R243*	1.000	superfamily_Tubulin_FtsZ_GTPase,smart_Tubulin_FtsZ_GTPase	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin	-	no_errors	TUBA3E	HGNC	ENSG00000152086				169	0	0	151	23	13.2184
AMER3	0	genome.wustl.edu	37	2	131520836	131520836	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7196-01A-11D-2053-08	TCGA-BR-7196-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fd3a3c08-528b-44e9-bd44-1b6c48248baa	8627b3c5-c183-425c-96a0-c86a4ac4de83	2	131520836	131520836	G	C	SNP	AMER3	ENST00000321420	human	ensembl	74_37	+1	known	missense	c.1191	p.E397D	1.000	pfam_Uncharacterised_FAM123	pfam_Uncharacterised_FAM123	-	no_errors	AMER3	HGNC	ENSG00000178171				54	0	0	50	12	19.3548
RAPGEF4	0	genome.wustl.edu	37	2	173898667	173898667	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-7196-01A-11D-2053-08	TCGA-BR-7196-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fd3a3c08-528b-44e9-bd44-1b6c48248baa	8627b3c5-c183-425c-96a0-c86a4ac4de83	2	173898667	173898667	T	A	SNP	RAPGEF4	ENST00000397081	human	ensembl	74_37	+1	known	missense	c.2675	p.F892Y	1.000	pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_RasGRF_CDC25,pfam_cNMP-bd_dom,pfam_DEP_dom,pfam_Ras-like_Gua-exchang_fac_N,pfam_Ras-assoc,superfamily_Ras_GEF_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_DEP_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_cNMP-bd_dom,pfscan_DEP_dom,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N,prints_cAMP/cGMP_kin	-	no_errors	RAPGEF4	HGNC	ENSG00000091428				60	0	0	59	13	18.0556
VWC2L	0	genome.wustl.edu	37	2	215278974	215278974	+	Silent	SNP	C	C	T			TCGA-BR-7196-01A-11D-2053-08	TCGA-BR-7196-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fd3a3c08-528b-44e9-bd44-1b6c48248baa	8627b3c5-c183-425c-96a0-c86a4ac4de83	2	215278974	215278974	C	T	SNP	VWC2L	ENST00000312504	human	ensembl	74_37	+1	known	silent	c.57	p.V19	1.000	NULL	smart_VWF_C,pfscan_VWF_C	-	no_errors	VWC2L	HGNC	ENSG00000174453				71	0	0	93	6	6.06061
ARPC2	0	genome.wustl.edu	37	2	219110154	219110154	+	Silent	SNP	A	A	G			TCGA-BR-7196-01A-11D-2053-08	TCGA-BR-7196-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fd3a3c08-528b-44e9-bd44-1b6c48248baa	8627b3c5-c183-425c-96a0-c86a4ac4de83	2	219110154	219110154	A	G	SNP	ARPC2	ENST00000295685	human	ensembl	74_37	+1	known	silent	c.561	p.E187	1.000	pfam_P34-arc	pfam_P34-arc	-	no_errors	ARPC2	HGNC	ENSG00000163466				111	1	0.892857	120	10	7.69231
WDPCP	0	genome.wustl.edu	37	2	63631623	63631623	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7196-01A-11D-2053-08	TCGA-BR-7196-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fd3a3c08-528b-44e9-bd44-1b6c48248baa	8627b3c5-c183-425c-96a0-c86a4ac4de83	2	63631623	63631623	G	C	SNP	WDPCP	ENST00000272321	human	ensembl	74_37	-1	known	missense	c.995	p.T332S	1.000	pfam_DUF3312,superfamily_WD40_repeat_dom	pfam_DUF3312,superfamily_WD40_repeat_dom	-	no_errors	WDPCP	HGNC	ENSG00000143951				110	0	0	120	7	5.51181
ELMO2	0	genome.wustl.edu	37	20	45003173	45003173	+	Splice_Site	SNP	A	A	T			TCGA-BR-7196-01A-11D-2053-08	TCGA-BR-7196-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fd3a3c08-528b-44e9-bd44-1b6c48248baa	8627b3c5-c183-425c-96a0-c86a4ac4de83	20	45003173	45003173	A	T	SNP	ELMO2	ENST00000439931	human	ensembl	74_37	-1	known	splice_site	c.1206+2	e13+2	1.000	-	-	-	no_errors	ELMO2	HGNC	ENSG00000062598				48	0	0	71	4	5.33333
MOCS3	0	genome.wustl.edu	37	20	49576176	49576176	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7196-01A-11D-2053-08	TCGA-BR-7196-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fd3a3c08-528b-44e9-bd44-1b6c48248baa	8627b3c5-c183-425c-96a0-c86a4ac4de83	20	49576176	49576176	G	T	SNP	MOCS3	ENST00000244051	human	ensembl	74_37	+1	known	missense	c.797	p.G266V	0.430	pfam_MoeZ_MoeB,superfamily_Molybdenum_cofac_synth_MoeB	pfam_ThiF_NAD_FAD-bd,pfam_MoeZ_MoeB,pfam_Rhodanese-like_dom,superfamily_Molybdenum_cofac_synth_MoeB,smart_Rhodanese-like_dom,pfscan_Rhodanese-like_dom	-	no_errors	MOCS3	HGNC	ENSG00000124217				78	0	0	66	6	8.33333
DYRK1A	0	genome.wustl.edu	37	21	38877823	38877823	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7196-01A-11D-2053-08	TCGA-BR-7196-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fd3a3c08-528b-44e9-bd44-1b6c48248baa	8627b3c5-c183-425c-96a0-c86a4ac4de83	21	38877823	38877823	G	A	SNP	DYRK1A	ENST00000398960	human	ensembl	74_37	+1	known	missense	c.1477	p.V493I	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	DYRK1A	HGNC	ENSG00000157540				181	0	0	143	21	12.8049
NIPSNAP1	0	genome.wustl.edu	37	22	29956772	29956772	+	Silent	SNP	G	G	A			TCGA-BR-7196-01A-11D-2053-08	TCGA-BR-7196-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fd3a3c08-528b-44e9-bd44-1b6c48248baa	8627b3c5-c183-425c-96a0-c86a4ac4de83	22	29956772	29956772	G	A	SNP	NIPSNAP1	ENST00000216121	human	ensembl	74_37	-1	known	silent	c.657	p.G219	0.090	pfam_NIPSNAP,superfamily_Dimeric_a/b-barrel	pfam_NIPSNAP,superfamily_Dimeric_a/b-barrel	-	no_errors	NIPSNAP1	HGNC	ENSG00000184117				201	0	0	187	19	9.2233
PKDREJ	0	genome.wustl.edu	37	22	46657925	46657925	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7196-01A-11D-2053-08	TCGA-BR-7196-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fd3a3c08-528b-44e9-bd44-1b6c48248baa	8627b3c5-c183-425c-96a0-c86a4ac4de83	22	46657925	46657925	C	G	SNP	PKDREJ	ENST00000253255	human	ensembl	74_37	-1	known	missense	c.1295	p.R432T	1.000	pfam_PKD/REJ-like,pfscan_REJ-like	pfam_PKD1_2_channel,pfam_PKD/REJ-like,pfam_PLAT/LH2_dom,pfam_Ion_trans_dom,superfamily_Lipase_LipOase,smart_GPS_dom,smart_PLAT/LH2_dom,pfscan_PLAT/LH2_dom,pfscan_REJ-like,prints_PKD_2	-	no_errors	PKDREJ	HGNC	ENSG00000130943				96	0	0	78	8	9.30233
MYLK	0	genome.wustl.edu	37	3	123419688	123419688	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7196-01A-11D-2053-08	TCGA-BR-7196-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fd3a3c08-528b-44e9-bd44-1b6c48248baa	8627b3c5-c183-425c-96a0-c86a4ac4de83	3	123419688	123419688	C	T	SNP	MYLK	ENST00000360304	human	ensembl	74_37	-1	known	missense	c.2627	p.R876H	0.977	NULL	pfam_Ig_I-set,pfam_Prot_kinase_dom,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	MYLK	HGNC	ENSG00000065534				136	0	0	96	26	21.3115
PIK3CA	0	genome.wustl.edu	37	3	178921553	178921553	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-7196-01A-11D-2053-08	TCGA-BR-7196-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fd3a3c08-528b-44e9-bd44-1b6c48248baa	8627b3c5-c183-425c-96a0-c86a4ac4de83	3	178921553	178921553	T	A	SNP	PIK3CA	ENST00000263967	human	ensembl	74_37	+1	known	missense	c.1035	p.N345K	1.000	superfamily_C2_dom,smart_PI3K_C2_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879				71	0	0	72	10	12.1951
LEPREL1	0	genome.wustl.edu	37	3	189690711	189690711	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7196-01A-11D-2053-08	TCGA-BR-7196-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fd3a3c08-528b-44e9-bd44-1b6c48248baa	8627b3c5-c183-425c-96a0-c86a4ac4de83	3	189690711	189690711	T	G	SNP	LEPREL1	ENST00000319332	human	ensembl	74_37	-1	known	missense	c.1651	p.T551P	1.000	smart_Pro_4_hyd_alph	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	LEPREL1	HGNC	ENSG00000090530				66	0	0	53	17	24.2857
BDH1	0	genome.wustl.edu	37	3	197238850	197238850	+	Silent	SNP	G	G	A			TCGA-BR-7196-01A-11D-2053-08	TCGA-BR-7196-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fd3a3c08-528b-44e9-bd44-1b6c48248baa	8627b3c5-c183-425c-96a0-c86a4ac4de83	3	197238850	197238850	G	A	SNP	BDH1	ENST00000358186	human	ensembl	74_37	-1	known	silent	c.948	p.H316	1.000	NULL	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR,prints_DHB_DH	-	no_errors	BDH1	HGNC	ENSG00000161267				245	0	0	170	54	24.1071
MYRIP	0	genome.wustl.edu	37	3	40251427	40251427	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7196-01A-11D-2053-08	TCGA-BR-7196-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fd3a3c08-528b-44e9-bd44-1b6c48248baa	8627b3c5-c183-425c-96a0-c86a4ac4de83	3	40251427	40251427	G	A	SNP	MYRIP	ENST00000302541	human	ensembl	74_37	+1	known	missense	c.1748	p.R583Q	0.977	pfam_Myrip/Melanophilin	pfam_Myrip/Melanophilin,superfamily_Znf_FYVE_PHD,pfscan_Znf_FYVE-typ	-	no_errors	MYRIP	HGNC	ENSG00000170011				81	0	0	71	5	6.57895
TRPC3	0	genome.wustl.edu	37	4	122801003	122801003	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7196-01A-11D-2053-08	TCGA-BR-7196-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fd3a3c08-528b-44e9-bd44-1b6c48248baa	8627b3c5-c183-425c-96a0-c86a4ac4de83	4	122801003	122801003	G	T	SNP	TRPC3	ENST00000379645	human	ensembl	74_37	-1	known	missense	c.2654	p.S885Y	1.000	superfamily_ARM-type_fold,tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,pfam_PKD1_2_channel,superfamily_Ankyrin_rpt-contain_dom,superfamily_ARM-type_fold,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_TRPC3_channel,prints_TRPC_channel,tigrfam_TRP_channel	-	no_errors	TRPC3	HGNC	ENSG00000138741				58	0	0	58	7	10.7692
LRBA	0	genome.wustl.edu	37	4	151836804	151836804	+	Silent	SNP	G	G	A			TCGA-BR-7196-01A-11D-2053-08	TCGA-BR-7196-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fd3a3c08-528b-44e9-bd44-1b6c48248baa	8627b3c5-c183-425c-96a0-c86a4ac4de83	4	151836804	151836804	G	A	SNP	LRBA	ENST00000357115	human	ensembl	74_37	-1	known	silent	c.970	p.L324	1.000	superfamily_ConA-like_lec_gl_sf	pfam_BEACH_dom,pfam_DUF1088,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_ConA-like_lec_gl_sf,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom	-	no_errors	LRBA	HGNC	ENSG00000198589				50	0	0	51	3	5.55556
PLRG1	0	genome.wustl.edu	37	4	155461124	155461124	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7196-01A-11D-2053-08	TCGA-BR-7196-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fd3a3c08-528b-44e9-bd44-1b6c48248baa	8627b3c5-c183-425c-96a0-c86a4ac4de83	4	155461124	155461124	C	A	SNP	PLRG1	ENST00000393905	human	ensembl	74_37	-1	known	missense	c.1021	p.A341S	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	PLRG1	HGNC	ENSG00000171566				150	0	0	122	19	13.4752
GUCY1A3	0	genome.wustl.edu	37	4	156638314	156638314	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7196-01A-11D-2053-08	TCGA-BR-7196-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fd3a3c08-528b-44e9-bd44-1b6c48248baa	8627b3c5-c183-425c-96a0-c86a4ac4de83	4	156638314	156638314	G	A	SNP	GUCY1A3	ENST00000296518	human	ensembl	74_37	+1	known	missense	c.1576	p.E526K	1.000	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	pfam_A/G_cyclase,pfam_Haem_no_assoc-bd,pfam_Heme_NO-bd,superfamily_A/G_cyclase,superfamily_NO_sig/Golgi_transp_ligand-bd,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	GUCY1A3	HGNC	ENSG00000164116				111	0	0	99	18	15.3846
TRIML2	0	genome.wustl.edu	37	4	189012674	189012674	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7196-01A-11D-2053-08	TCGA-BR-7196-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fd3a3c08-528b-44e9-bd44-1b6c48248baa	8627b3c5-c183-425c-96a0-c86a4ac4de83	4	189012674	189012674	C	A	SNP	TRIML2	ENST00000512729	human	ensembl	74_37	-1	known	missense	c.1017	p.M339I	0.000	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,prints_Butyrophylin	-	no_errors	TRIML2	HGNC	ENSG00000179046				134	0	0	123	9	6.81818
GABRA2	0	genome.wustl.edu	37	4	46264078	46264078	+	Silent	SNP	A	A	G			TCGA-BR-7196-01A-11D-2053-08	TCGA-BR-7196-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fd3a3c08-528b-44e9-bd44-1b6c48248baa	8627b3c5-c183-425c-96a0-c86a4ac4de83	4	46264078	46264078	A	G	SNP	GABRA2	ENST00000540012	human	ensembl	74_37	-1	known	silent	c.759	p.A253	0.989	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_GABAAa_rcpt,prints_GABAA_rcpt,prints_GABBAa2_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GABRA2	HGNC	ENSG00000151834				109	0	0	105	9	7.89474
PPAT	0	genome.wustl.edu	37	4	57301585	57301585	+	Nonsense_Mutation	SNP	G	G	C			TCGA-BR-7196-01A-11D-2053-08	TCGA-BR-7196-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fd3a3c08-528b-44e9-bd44-1b6c48248baa	8627b3c5-c183-425c-96a0-c86a4ac4de83	4	57301585	57301585	G	C	SNP	PPAT	ENST00000264220	human	ensembl	74_37	-1	known	nonsense	c.59	p.S20*	0.968	pfam_GATase_dom,pirsf_Amd_phspho_trans,tigrfam_Amd_phspho_trans	pfam_GATase_dom,pfam_PRibTrfase_dom,pirsf_Amd_phspho_trans,tigrfam_Amd_phspho_trans	-	no_errors	PPAT	HGNC	ENSG00000128059				161	0	0	144	23	13.7725
DNAH5	0	genome.wustl.edu	37	5	13701516	13701516	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7196-01A-11D-2053-08	TCGA-BR-7196-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fd3a3c08-528b-44e9-bd44-1b6c48248baa	8627b3c5-c183-425c-96a0-c86a4ac4de83	5	13701516	13701516	G	T	SNP	DNAH5	ENST00000265104	human	ensembl	74_37	-1	known	missense	c.13368	p.F4456L	1.000	pfam_Dynein_heavy_dom	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139				84	0	0	89	6	6.31579
CDC23	0	genome.wustl.edu	37	5	137537841	137537841	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-7196-01A-11D-2053-08	TCGA-BR-7196-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fd3a3c08-528b-44e9-bd44-1b6c48248baa	8627b3c5-c183-425c-96a0-c86a4ac4de83	5	137537841	137537841	C	A	SNP	CDC23	ENST00000394886	human	ensembl	74_37	-1	known	nonsense	c.376	p.G126*	1.000	pfam_APC8	pfam_APC8,pfam_TPR_1,pfam_Transposase_InsH_N,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	CDC23	HGNC	ENSG00000094880				29	0	0	25	3	10.7143
PTGER4	0	genome.wustl.edu	37	5	40692250	40692250	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7196-01A-11D-2053-08	TCGA-BR-7196-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fd3a3c08-528b-44e9-bd44-1b6c48248baa	8627b3c5-c183-425c-96a0-c86a4ac4de83	5	40692250	40692250	A	C	SNP	PTGER4	ENST00000302472	human	ensembl	74_37	+1	known	missense	c.1237	p.N413H	0.096	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Prost_EP4_rcpt,prints_Prostanoid_rcpt,prints_GPCR_Rhodpsn,prints_Prostglndn_DP_rcpt	-	no_errors	PTGER4	HGNC	ENSG00000171522				53	0	0	50	16	24.2424
HCN1	0	genome.wustl.edu	37	5	45695943	45695943	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-7196-01A-11D-2053-08	TCGA-BR-7196-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fd3a3c08-528b-44e9-bd44-1b6c48248baa	8627b3c5-c183-425c-96a0-c86a4ac4de83	5	45695943	45695943	C	A	SNP	HCN1	ENST00000303230	human	ensembl	74_37	-1	known	nonsense	c.253	p.E85*	1.000	NULL	pfam_Ion_trans_N,pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG	-	no_errors	HCN1	HGNC	ENSG00000164588				35	0	0	32	5	13.5135
PRDM1	0	genome.wustl.edu	37	6	106553508	106553508	+	Silent	SNP	G	G	A			TCGA-BR-7196-01A-11D-2053-08	TCGA-BR-7196-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fd3a3c08-528b-44e9-bd44-1b6c48248baa	8627b3c5-c183-425c-96a0-c86a4ac4de83	6	106553508	106553508	G	A	SNP	PRDM1	ENST00000369096	human	ensembl	74_37	+1	known	silent	c.1473	p.A491	0.992	pirsf_Znf_PRDM1	pfam_Znf_C2H2,pfam_SET_dom,smart_SET_dom,smart_Znf_C2H2-like,pirsf_Znf_PRDM1,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM1	HGNC	ENSG00000057657				66	0	0	49	9	15.5172
ROS1	0	genome.wustl.edu	37	6	117641088	117641088	+	Silent	SNP	T	T	C			TCGA-BR-7196-01A-11D-2053-08	TCGA-BR-7196-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fd3a3c08-528b-44e9-bd44-1b6c48248baa	8627b3c5-c183-425c-96a0-c86a4ac4de83	6	117641088	117641088	T	C	SNP	ROS1	ENST00000368508	human	ensembl	74_37	-1	known	silent	c.5883	p.E1961	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_LDLR_classB_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	ROS1	HGNC	ENSG00000047936				116	0	0	111	11	9.01639
ESR1	0	genome.wustl.edu	37	6	152420094	152420094	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7196-01A-11D-2053-08	TCGA-BR-7196-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fd3a3c08-528b-44e9-bd44-1b6c48248baa	8627b3c5-c183-425c-96a0-c86a4ac4de83	6	152420094	152420094	C	T	SNP	ESR1	ENST00000206249	human	ensembl	74_37	+1	known	missense	c.1781	p.T594M	0.178	NULL	pfam_Oestr_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Oestr_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	ESR1	HGNC	ENSG00000091831				39	0	0	33	11	25
FNDC1	0	genome.wustl.edu	37	6	159636057	159636057	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7196-01A-11D-2053-08	TCGA-BR-7196-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fd3a3c08-528b-44e9-bd44-1b6c48248baa	8627b3c5-c183-425c-96a0-c86a4ac4de83	6	159636057	159636057	C	T	SNP	FNDC1	ENST00000297267	human	ensembl	74_37	+1	known	missense	c.541	p.R181C	0.624	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	FNDC1	HGNC	ENSG00000164694				54	0	0	66	8	10.8108
TTBK1	0	genome.wustl.edu	37	6	43251528	43251528	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7196-01A-11D-2053-08	TCGA-BR-7196-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fd3a3c08-528b-44e9-bd44-1b6c48248baa	8627b3c5-c183-425c-96a0-c86a4ac4de83	6	43251528	43251528	G	A	SNP	TTBK1	ENST00000259750	human	ensembl	74_37	+1	known	missense	c.3050	p.G1017D	0.985	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TTBK1	HGNC	ENSG00000146216				58	0	0	59	10	14.4928
LRRC1	0	genome.wustl.edu	37	6	53785539	53785539	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7196-01A-11D-2053-08	TCGA-BR-7196-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fd3a3c08-528b-44e9-bd44-1b6c48248baa	8627b3c5-c183-425c-96a0-c86a4ac4de83	6	53785539	53785539	G	A	SNP	LRRC1	ENST00000370888	human	ensembl	74_37	+1	known	missense	c.1396	p.D466N	0.998	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC1	HGNC	ENSG00000137269				48	0	0	58	8	12.1212
ZMIZ2	0	genome.wustl.edu	37	7	44797586	44797586	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7196-01A-11D-2053-08	TCGA-BR-7196-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fd3a3c08-528b-44e9-bd44-1b6c48248baa	8627b3c5-c183-425c-96a0-c86a4ac4de83	7	44797586	44797586	C	G	SNP	ZMIZ2	ENST00000309315	human	ensembl	74_37	+1	known	missense	c.692	p.P231R	0.786	NULL	pfam_Znf_MIZ,pfscan_Znf_MIZ	-	no_errors	ZMIZ2	HGNC	ENSG00000122515				81	0	0	73	4	5.19481
TRAPPC9	0	genome.wustl.edu	37	8	141460940	141460940	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7196-01A-11D-2053-08	TCGA-BR-7196-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fd3a3c08-528b-44e9-bd44-1b6c48248baa	8627b3c5-c183-425c-96a0-c86a4ac4de83	8	141460940	141460940	A	G	SNP	TRAPPC9	ENST00000389328	human	ensembl	74_37	-1	known	missense	c.827	p.L276P	1.000	NULL	pfam_TRAPP_II_complex_Trs120	-	no_errors	TRAPPC9	HGNC	ENSG00000167632				30	0	0	26	2	7.14286
PPP6C	0	genome.wustl.edu	37	9	127920613	127920613	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7196-01A-11D-2053-08	TCGA-BR-7196-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fd3a3c08-528b-44e9-bd44-1b6c48248baa	8627b3c5-c183-425c-96a0-c86a4ac4de83	9	127920613	127920613	G	A	SNP	PPP6C	ENST00000451402	human	ensembl	74_37	-1	known	missense	c.397	p.L133F	1.000	pfam_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase,prints_Ser/Thr-sp_prot-phosphatase	pfam_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase,prints_Ser/Thr-sp_prot-phosphatase	-	no_errors	PPP6C	HGNC	ENSG00000119414				156	0	0	144	17	10.559
TTF1	0	genome.wustl.edu	37	9	135267587	135267587	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7196-01A-11D-2053-08	TCGA-BR-7196-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fd3a3c08-528b-44e9-bd44-1b6c48248baa	8627b3c5-c183-425c-96a0-c86a4ac4de83	9	135267587	135267587	G	C	SNP	TTF1	ENST00000334270	human	ensembl	74_37	-1	known	missense	c.1863	p.S621R	0.002	superfamily_Homeodomain-like,smart_SANT/Myb	superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	TTF1	HGNC	ENSG00000125482				41	0	0	44	3	6.38298
CCDC171	0	genome.wustl.edu	37	9	15920398	15920398	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7196-01A-11D-2053-08	TCGA-BR-7196-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fd3a3c08-528b-44e9-bd44-1b6c48248baa	8627b3c5-c183-425c-96a0-c86a4ac4de83	9	15920398	15920398	G	A	SNP	CCDC171	ENST00000380701	human	ensembl	74_37	+1	known	missense	c.3731	p.R1244H	1.000	NULL	superfamily_STAT_TF_coiled-coil	-	no_errors	CCDC171	HGNC	ENSG00000164989				64	0	0	83	10	10.7527
ZBTB33	0	genome.wustl.edu	37	X	119389023	119389023	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7196-01A-11D-2053-08	TCGA-BR-7196-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fd3a3c08-528b-44e9-bd44-1b6c48248baa	8627b3c5-c183-425c-96a0-c86a4ac4de83	X	119389023	119389023	C	G	SNP	ZBTB33	ENST00000326624	human	ensembl	74_37	+1	known	missense	c.1753	p.R585G	1.000	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB33	HGNC	ENSG00000177485				55	0	0	55	5	8.33333
BCOR	0	genome.wustl.edu	37	X	39923604	39923604	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7196-01A-11D-2053-08	TCGA-BR-7196-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fd3a3c08-528b-44e9-bd44-1b6c48248baa	8627b3c5-c183-425c-96a0-c86a4ac4de83	X	39923604	39923604	G	A	SNP	BCOR	ENST00000378444	human	ensembl	74_37	-1	known	nonsense	c.3487	p.R1163*	0.680	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	BCOR	HGNC	ENSG00000183337				25	0	0	29	11	27.5
SIK3	0	genome.wustl.edu	37	11	116798045	116798045	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7196-01A-11D-2053-08	TCGA-BR-7196-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fd3a3c08-528b-44e9-bd44-1b6c48248baa	8627b3c5-c183-425c-96a0-c86a4ac4de83	11	116798045	116798045	A	-	DEL	SIK3	ENST00000375300	human	ensembl	74_37	-1	known	frame_shift_del	c.506	p.F169fs	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom	-	no_errors	SIK3	HGNC	ENSG00000160584				137	0	0	147	15	9.25926
INPPL1	0	genome.wustl.edu	37	11	71948747	71948748	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-7196-01A-11D-2053-08	TCGA-BR-7196-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fd3a3c08-528b-44e9-bd44-1b6c48248baa	8627b3c5-c183-425c-96a0-c86a4ac4de83	11	71948747	71948748	-	C	INS	INPPL1	ENST00000298229	human	ensembl	74_37	+1	known	frame_shift_ins	c.3459_3460	p.R1155fs	0.976:0.962	NULL	pfam_Endo/exonuclease/phosphatase,pfam_SH2,pfam_SAM_2,pfam_SAM_type1,superfamily_Endo/exonuclease/phosphatase,superfamily_SAM/pointed,smart_SH2,smart_IPPc,smart_SAM,pfscan_SAM,pfscan_SH2,prints_SH2	-	no_errors	INPPL1	HGNC	ENSG00000165458				34	0	0	22	3	12
RRP7B	0	genome.wustl.edu	37	22	42970115	42970116	+	RNA	INS	-	-	T			TCGA-BR-7196-01A-11D-2053-08	TCGA-BR-7196-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fd3a3c08-528b-44e9-bd44-1b6c48248baa	8627b3c5-c183-425c-96a0-c86a4ac4de83	22	42970115	42970116	-	T	INS	RRP7B	ENST00000458605	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001:0.002	-	-	-	no_errors	RRP7B	HGNC	ENSG00000182841				46	0	0	45	4	8.16327
MED12	0	genome.wustl.edu	37	X	70360680	70360682	+	In_Frame_Del	DEL	GCA	GCA	-			TCGA-BR-7196-01A-11D-2053-08	TCGA-BR-7196-10A-01D-2053-08	GCA	GCA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fd3a3c08-528b-44e9-bd44-1b6c48248baa	8627b3c5-c183-425c-96a0-c86a4ac4de83	X	70360680	70360682	GCA	-	DEL	MED12	ENST00000333646	human	ensembl	74_37	+1	known	in_frame_del	c.6249_6251	p.Q2087in_frame_del	0.997:1.000:1.000	NULL	pfam_Mediator_Med12_LCEWAV,pfam_Mediator_Med12_catenin-bd,pfam_Mediator_Med12	-	no_errors	MED12	HGNC	ENSG00000184634				20	0	0	16	2	11.1111
