Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
SLC6A17	0	genome.wustl.edu	37	1	110714822	110714822	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	1	110714822	110714822	G	A	SNP	SLC6A17	ENST00000331565	human	ensembl	74_37	+1	known	missense	c.427	p.G143S	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_orphan	-	no_errors	SLC6A17	HGNC	ENSG00000197106				15	0	0	7	4	36.3636
BCL9	0	genome.wustl.edu	37	1	147083510	147083510	+	RNA	SNP	C	C	T			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	1	147083510	147083510	C	T	SNP	BCL9	ENST00000473292	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	BCL9	HGNC	ENSG00000116128				18	0	0	3	2	40
GJA8	0	genome.wustl.edu	37	1	147380926	147380926	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	1	147380926	147380926	A	C	SNP	GJA8	ENST00000240986	human	ensembl	74_37	+1	known	missense	c.844	p.T282P	0.988	pfam_Connexin50,prints_Connexin50	pfam_Connexin_N,pfam_Connexin50,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin,prints_Connexin50	-	no_errors	GJA8	HGNC	ENSG00000121634				142	0	0	85	6	6.59341
MCL1	0	genome.wustl.edu	37	1	150550743	150550743	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	1	150550743	150550743	A	C	SNP	MCL1	ENST00000369026	human	ensembl	74_37	-1	known	missense	c.913	p.W305G	1.000	pfam_Blc2_fam,pfscan_Bcl2-like,prints_Blc2_fam	pfam_Blc2_fam,pfscan_Bcl2-like,prints_Apop_reg_Mc1,prints_Blc2_fam	-	no_errors	MCL1	HGNC	ENSG00000143384				344	0	0	133	41	23.5632
POGZ	0	genome.wustl.edu	37	1	151378488	151378488	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	1	151378488	151378488	C	T	SNP	POGZ	ENST00000271715	human	ensembl	74_37	-1	known	missense	c.3023	p.R1008Q	1.000	NULL	pfam_DDE_SF_endonuclease_CENPB-like,pfam_HTH_CenpB_DNA-bd_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_HTH_CenpB_DNA-bd_dom,pfscan_Znf_C2H2	-	no_errors	POGZ	HGNC	ENSG00000143442				129	0	0	40	16	28.5714
FCGR2A	0	genome.wustl.edu	37	1	161480730	161480730	+	Silent	SNP	G	G	A			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	1	161480730	161480730	G	A	SNP	FCGR2A	ENST00000271450	human	ensembl	74_37	+1	known	silent	c.726	p.R242	0.003	NULL	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	FCGR2A	HGNC	ENSG00000143226				383	0	0	112	105	48.3871
TNN	0	genome.wustl.edu	37	1	175067563	175067563	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	1	175067563	175067563	G	A	SNP	TNN	ENST00000239462	human	ensembl	74_37	+1	known	missense	c.1951	p.V651M	0.002	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_Fibronectin_type3	-	no_errors	TNN	HGNC	ENSG00000120332				206	0	0	74	20	21.2766
HMCN1	0	genome.wustl.edu	37	1	186056429	186056429	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	1	186056429	186056429	G	T	SNP	HMCN1	ENST00000271588	human	ensembl	74_37	+1	known	nonsense	c.9127	p.E3043*	1.000	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd_dom,pfam_Thrombospondin_1_rpt,superfamily_GFP,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom	-	no_errors	HMCN1	HGNC	ENSG00000143341				176	0	0	28	84	75
HSPG2	0	genome.wustl.edu	37	1	22199882	22199882	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	1	22199882	22199882	C	G	SNP	HSPG2	ENST00000374695	human	ensembl	74_37	-1	known	missense	c.3779	p.G1260A	1.000	pfam_EGF_laminin,smart_EGF_laminin,smart_EG-like_dom,pfscan_EGF_laminin	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Laminin_G,pfam_Laminin_B_type_IV,pfam_EGF_laminin,pfam_LDrepeatLR_classA_rpt,pfam_EG-like_dom,superfamily_ConA-like_lec_gl_sf,superfamily_LDrepeatLR_classA_rpt,smart_SEA_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Laminin_B_subgr,smart_EGF_laminin,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_LDrepeatLR_classA_rpt,pfscan_SEA_dom,pfscan_Ig-like_dom,prints_LDrepeatLR_classA_rpt	-	no_errors	HSPG2	HGNC	ENSG00000142798				309	0	0	96	58	37.6623
ADCK3	0	genome.wustl.edu	37	1	227165157	227165157	+	Silent	SNP	C	C	T			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	1	227165157	227165157	C	T	SNP	ADCK3	ENST00000366777	human	ensembl	74_37	+1	known	silent	c.663	p.A221	0.639	NULL	pfam_UbiB_dom,superfamily_Kinase-like_dom	-	no_errors	ADCK3	HGNC	ENSG00000163050				9	0	0	2	4	66.6667
WNT9A	0	genome.wustl.edu	37	1	228111927	228111927	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	1	228111927	228111927	C	A	SNP	WNT9A	ENST00000272164	human	ensembl	74_37	-1	known	missense	c.527	p.S176I	1.000	pfam_Wnt,smart_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt9a	-	no_errors	WNT9A	HGNC	ENSG00000143816				256	0	0	135	48	26.2295
OBSCN	0	genome.wustl.edu	37	1	228430947	228430947	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	1	228430947	228430947	C	G	SNP	OBSCN	ENST00000422127	human	ensembl	74_37	+1	known	missense	c.2993	p.A998G	0.015	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358				70	0	0	22	6	21.4286
CNKSR1	0	genome.wustl.edu	37	1	26515312	26515312	+	Silent	SNP	T	T	G			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	1	26515312	26515312	T	G	SNP	CNKSR1	ENST00000374253	human	ensembl	74_37	+1	known	silent	c.1761	p.G587	0.350	NULL	pfam_CRIC_domain_Chordata,pfam_Pleckstrin_homology,pfam_SAM_type1,superfamily_SAM/pointed,superfamily_PDZ,smart_SAM,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_SAM	-	no_errors	CNKSR1	HGNC	ENSG00000142675				214	0	0	75	25	25
ZMYM1	0	genome.wustl.edu	37	1	35570337	35570337	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	1	35570337	35570337	T	G	SNP	ZMYM1	ENST00000359858	human	ensembl	74_37	+1	novel	missense	c.774	p.F258L	0.122	pfam_Znf_MYM,smart_TRASH_dom	pfam_Znf_MYM,pfam_HATC_dom_C,superfamily_RNaseH-like_dom,smart_TRASH_dom	-	no_errors	ZMYM1	HGNC	ENSG00000197056				73	0	0	42	3	6.66667
CAP1	0	genome.wustl.edu	37	1	40535894	40535894	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	1	40535894	40535894	A	T	SNP	CAP1	ENST00000372792	human	ensembl	74_37	+1	known	missense	c.1057	p.I353L	1.000	pfam_Adenylate_cyclase-assoc_CAP_C,superfamily_Adenylate_cyclase-assoc_CAP_C	pfam_Adenylate_cyclase-assoc_CAP_N,pfam_Adenylate_cyclase-assoc_CAP_C,superfamily_Adenylate_cyclase-assoc_CAP_N,superfamily_Adenylate_cyclase-assoc_CAP_C,smart_CARP_motif	-	no_errors	CAP1	HGNC	ENSG00000131236				102	0	0	35	18	33.9623
SZT2	0	genome.wustl.edu	37	1	43904434	43904434	+	Silent	SNP	C	C	T			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	1	43904434	43904434	C	T	SNP	SZT2	ENST00000562955	human	ensembl	74_37	+1	known	silent	c.6402	p.D2134	0.990	NULL	NULL	-	no_errors	SZT2	HGNC	ENSG00000198198				86	0	0	19	14	42.4242
INSL5	0	genome.wustl.edu	37	1	67266854	67266854	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	1	67266854	67266854	G	C	SNP	INSL5	ENST00000304526	human	ensembl	74_37	-1	known	missense	c.51	p.I17M	0.000	superfamily_Insulin-like	pfam_Insulin-like,superfamily_Insulin-like,smart_Insulin-like	-	no_errors	INSL5	HGNC	ENSG00000172410				90	0	0	35	6	14.6341
LRRC7	0	genome.wustl.edu	37	1	70555456	70555456	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	1	70555456	70555456	G	A	SNP	LRRC7	ENST00000035383	human	ensembl	74_37	+1	known	missense	c.4385	p.S1462N	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_Leu-rich_rpt,pfam_PDZ,superfamily_PDZ,smart_Leu-rich_rpt_typical-subtyp,smart_PDZ,pfscan_PDZ	-	no_errors	LRRC7	HGNC	ENSG00000033122				92	0	0	39	14	26.4151
CAMTA1	0	genome.wustl.edu	37	1	7737720	7737720	+	Silent	SNP	G	G	A			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	1	7737720	7737720	G	A	SNP	CAMTA1	ENST00000303635	human	ensembl	74_37	+1	known	silent	c.2841	p.S947	0.563	pfam_IPT,superfamily_Ig_E-set	pfam_CG-1_dom,pfam_IPT,pfam_IQ_motif_EF-hand-BS,superfamily_Ig_E-set,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	CAMTA1	HGNC	ENSG00000171735				187	0	0	55	27	32.9268
KLHL17	0	genome.wustl.edu	37	1	899515	899515	+	Silent	SNP	C	C	T			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	1	899515	899515	C	T	SNP	KLHL17	ENST00000338591	human	ensembl	74_37	+1	known	silent	c.1473	p.Y491	0.375	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL17	HGNC	ENSG00000187961				230	0	0	69	38	35.514
HFM1	0	genome.wustl.edu	37	1	91784848	91784848	+	Splice_Site	SNP	A	A	G			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	1	91784848	91784848	A	G	SNP	HFM1	ENST00000370425	human	ensembl	74_37	-1	known	splice_site	c.2680+2	e23+2	1.000	-	-	-	no_errors	HFM1	HGNC	ENSG00000162669				107	0	0	24	45	65.2174
TMEM56	0	genome.wustl.edu	37	1	95639441	95639441	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	1	95639441	95639441	C	T	SNP	TMEM56	ENST00000370203	human	ensembl	74_37	+1	novel	nonsense	c.469	p.Q157*	1.000	pfam_TLC-dom,smart_TLC-dom,pfscan_TLC-dom	pfam_TLC-dom,smart_TLC-dom,pfscan_TLC-dom	-	no_errors	TMEM56	HGNC	ENSG00000152078				120	0	0	49	26	34.6667
PDCD11	0	genome.wustl.edu	37	10	105172893	105172893	+	Silent	SNP	C	C	T			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	10	105172893	105172893	C	T	SNP	PDCD11	ENST00000369797	human	ensembl	74_37	+1	known	silent	c.999	p.C333	0.002	superfamily_NA-bd_OB-fold,smart_RNA-binding_domain_S1,pfscan_Rbsml_prot_S1_RNA-bd_dom	pfam_Rbsml_prot_S1_RNA-bd_dom,pfam_Suf,superfamily_NA-bd_OB-fold,smart_RNA-binding_domain_S1,smart_HAT,pfscan_TPR-contain_dom,pfscan_Rbsml_prot_S1_RNA-bd_dom,prints_Ribosomal_S1	-	no_errors	PDCD11	HGNC	ENSG00000148843				136	0	0	73	25	25.5102
GPAM	0	genome.wustl.edu	37	10	113921450	113921450	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	10	113921450	113921450	C	A	SNP	GPAM	ENST00000348367	human	ensembl	74_37	-1	known	missense	c.1469	p.C490F	1.000	NULL	pfam_Plipid/glycerol_acylTrfase,smart_Plipid/glycerol_acylTrfase	-	no_errors	GPAM	HGNC	ENSG00000119927				66	0	0	53	10	15.873
GPR26	0	genome.wustl.edu	37	10	125426323	125426323	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	10	125426323	125426323	G	A	SNP	GPR26	ENST00000284674	human	ensembl	74_37	+1	known	missense	c.400	p.A134T	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR26	HGNC	ENSG00000154478				30	0	0	12	6	33.3333
CAMK1D	0	genome.wustl.edu	37	10	12803037	12803037	+	Silent	SNP	C	C	T			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	10	12803037	12803037	C	T	SNP	CAMK1D	ENST00000378847	human	ensembl	74_37	+1	known	silent	c.390	p.D130	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CAMK1D	HGNC	ENSG00000183049				112	0	0	60	18	23.0769
LRRC27	0	genome.wustl.edu	37	10	134165209	134165209	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	10	134165209	134165209	C	T	SNP	LRRC27	ENST00000368613	human	ensembl	74_37	+1	known	missense	c.1025	p.A342V	0.016	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC27	HGNC	ENSG00000148814				220	0	0	67	22	24.7191
CUBN	0	genome.wustl.edu	37	10	17126401	17126401	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	10	17126401	17126401	A	C	SNP	CUBN	ENST00000377833	human	ensembl	74_37	-1	known	missense	c.2170	p.L724V	0.813	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_CUB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_CUB_dom,pfscan_CUB_dom,pfscan_EG-like_dom	-	no_errors	CUBN	HGNC	ENSG00000107611				41	0	0	27	13	32.5
MYO3A	0	genome.wustl.edu	37	10	26463195	26463195	+	Silent	SNP	G	G	A			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	10	26463195	26463195	G	A	SNP	MYO3A	ENST00000265944	human	ensembl	74_37	+1	known	silent	c.4002	p.R1334	0.002	superfamily_P-loop_NTPase	pfam_Myosin_head_motor_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_Prot_kinase_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO3A	HGNC	ENSG00000095777				210	0	0	115	24	17.2662
TFAM	0	genome.wustl.edu	37	10	60150559	60150559	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	10	60150559	60150559	G	T	SNP	TFAM	ENST00000487519	human	ensembl	74_37	+1	known	missense	c.476	p.R159L	0.975	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	TFAM	HGNC	ENSG00000108064				98	0	0	38	12	24
PALD1	0	genome.wustl.edu	37	10	72294583	72294583	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	10	72294583	72294583	C	A	SNP	PALD1	ENST00000263563	human	ensembl	74_37	+1	known	missense	c.1211	p.P404Q	0.000	NULL	smart_Tyr_Pase_cat	-	no_errors	PALD1	HGNC	ENSG00000107719				19	0	0	17	6	26.087
SAMD8	0	genome.wustl.edu	37	10	76935972	76935972	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	10	76935972	76935972	A	T	SNP	SAMD8	ENST00000372690	human	ensembl	74_37	+1	known	missense	c.1130	p.E377V	1.000	NULL	pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	SAMD8	HGNC	ENSG00000156671				268	0	0	116	39	25.1613
TLL2	0	genome.wustl.edu	37	10	98192670	98192670	+	Silent	SNP	G	G	A			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	10	98192670	98192670	G	A	SNP	TLL2	ENST00000357947	human	ensembl	74_37	-1	known	silent	c.414	p.A138	0.000	pirsf_BMP_1/tolloid-like	pirsf_BMP_1/tolloid-like,pfam_CUB_dom,pfam_Peptidase_M12A,pfam_EGF-like_Ca-bd_dom,superfamily_CUB_dom,smart_Peptidase_Metallo,smart_CUB_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,prints_Peptidase_M12A,pfscan_CUB_dom,pfscan_EG-like_dom	-	no_errors	TLL2	HGNC	ENSG00000095587				105	0	0	46	36	43.9024
RRP12	0	genome.wustl.edu	37	10	99116858	99116858	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	10	99116858	99116858	C	T	SNP	RRP12	ENST00000370992	human	ensembl	74_37	-1	known	missense	c.3887	p.R1296Q	0.006	NULL	pfam_Uncharacterised_NUC173,superfamily_ARM-type_fold	-	no_errors	RRP12	HGNC	ENSG00000052749				123	0	0	48	16	25
RRP12	0	genome.wustl.edu	37	10	99133605	99133605	+	Silent	SNP	G	G	A			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	10	99133605	99133605	G	A	SNP	RRP12	ENST00000370992	human	ensembl	74_37	-1	known	silent	c.1845	p.Y615	0.985	pfam_Uncharacterised_NUC173,superfamily_ARM-type_fold	pfam_Uncharacterised_NUC173,superfamily_ARM-type_fold	-	no_errors	RRP12	HGNC	ENSG00000052749				65	0	0	52	16	23.5294
BIRC2	0	genome.wustl.edu	37	11	102221160	102221160	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	11	102221160	102221160	A	G	SNP	BIRC2	ENST00000227758	human	ensembl	74_37	+1	known	missense	c.575	p.H192R	0.065	pfam_BIR,smart_BIR,pfscan_BIR	pfam_BIR,pfam_CARD,superfamily_DEATH-like_dom,smart_BIR,smart_CARD,smart_Znf_RING,pfscan_CARD,pfscan_BIR,pfscan_Znf_RING	-	no_errors	BIRC2	HGNC	ENSG00000110330				245	0	0	61	27	30.6818
GRIA4	0	genome.wustl.edu	37	11	105795340	105795340	+	Silent	SNP	A	A	C			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	11	105795340	105795340	A	C	SNP	GRIA4	ENST00000282499	human	ensembl	74_37	+1	known	silent	c.1692	p.L564	1.000	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIA4	HGNC	ENSG00000152578				92	0	0	27	13	32.5
OR6M1	0	genome.wustl.edu	37	11	123676387	123676387	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	11	123676387	123676387	C	T	SNP	OR6M1	ENST00000309154	human	ensembl	74_37	-1	known	missense	c.671	p.R224H	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6M1	HGNC	ENSG00000196099				90	0	0	23	15	39.4737
OR8D2	0	genome.wustl.edu	37	11	124189172	124189172	+	Silent	SNP	T	T	G			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	11	124189172	124189172	T	G	SNP	OR8D2	ENST00000357438	human	ensembl	74_37	-1	known	silent	c.922	p.R308	0.002	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8D2	HGNC	ENSG00000197263				111	0	0	36	15	29.4118
NELL1	0	genome.wustl.edu	37	11	21594756	21594756	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	11	21594756	21594756	T	G	SNP	NELL1	ENST00000357134	human	ensembl	74_37	+1	known	missense	c.2183	p.L728R	0.412	pfam_VWF_C,smart_VWC_out,smart_VWF_C,pfscan_VWF_C	pfam_EGF-like_Ca-bd_dom,pfam_VWF_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_VWC_out,smart_VWF_C,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_VWF_C	-	no_errors	NELL1	HGNC	ENSG00000165973				121	0	0	51	9	15
OR51D1	0	genome.wustl.edu	37	11	4661487	4661487	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	11	4661487	4661487	A	T	SNP	OR51D1	ENST00000357605	human	ensembl	74_37	+1	known	missense	c.467	p.K156M	0.876	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR51D1	HGNC	ENSG00000197428				260	0	0	110	57	34.1317
TRIM49B	0	genome.wustl.edu	37	11	49053388	49053388	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	11	49053388	49053388	A	C	SNP	TRIM49B	ENST00000332682	human	ensembl	74_37	+1	known	missense	c.237	p.K79N	0.941	NULL	pfam_SPRY_rcpt,pfam_Znf_B-box,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM49B	HGNC	ENSG00000182053				79	0	0	27	9	25
OR52J3	0	genome.wustl.edu	37	11	5068233	5068233	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	11	5068233	5068233	C	T	SNP	OR52J3	ENST00000380370	human	ensembl	74_37	+1	known	missense	c.478	p.P160S	0.040	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR52J3	HGNC	ENSG00000205495				105	0	0	38	11	22.449
OR8H3	0	genome.wustl.edu	37	11	55890577	55890577	+	Silent	SNP	T	T	C			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	11	55890577	55890577	T	C	SNP	OR8H3	ENST00000313472	human	ensembl	74_37	+1	known	silent	c.729	p.S243	0.565	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8H3	HGNC	ENSG00000181761				172	0	0	32	21	39.6226
OR10W1	0	genome.wustl.edu	37	11	58034972	58034972	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	11	58034972	58034972	G	A	SNP	OR10W1	ENST00000395079	human	ensembl	74_37	-1	known	missense	c.359	p.P120L	0.998	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10W1	HGNC	ENSG00000172772				77	0	0	23	15	39.4737
OR52E4	0	genome.wustl.edu	37	11	5905690	5905690	+	Silent	SNP	T	T	C			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	11	5905690	5905690	T	C	SNP	OR52E4	ENST00000316987	human	ensembl	74_37	+1	known	silent	c.168	p.S56	0.955	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR52E4	HGNC	ENSG00000180974				283	0	0	135	57	29.6875
CNGA4	0	genome.wustl.edu	37	11	6265440	6265440	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	11	6265440	6265440	A	C	SNP	CNGA4	ENST00000379936	human	ensembl	74_37	+1	known	missense	c.1529	p.K510T	1.000	NULL	pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGA4	HGNC	ENSG00000132259				101	0	0	39	13	25
ORAOV1	0	genome.wustl.edu	37	11	69488060	69488060	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	11	69488060	69488060	T	C	SNP	ORAOV1	ENST00000279147	human	ensembl	74_37	-1	known	missense	c.80	p.Y27C	0.854	pfam_Essential_protein_Yae1_N	pfam_Essential_protein_Yae1_N	-	no_errors	ORAOV1	HGNC	ENSG00000149716				168	0	0	70	30	30
KLRD1	0	genome.wustl.edu	37	12	10462015	10462015	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	12	10462015	10462015	T	G	SNP	KLRD1	ENST00000381908	human	ensembl	74_37	+1	known	missense	c.36	p.I12M	0.417	NULL	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	KLRD1	HGNC	ENSG00000134539				114	0	0	46	20	30.303
PTPN11	0	genome.wustl.edu	37	12	112892433	112892433	+	Nonsense_Mutation	SNP	T	T	G			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	12	112892433	112892433	T	G	SNP	PTPN11	ENST00000351677	human	ensembl	74_37	+1	known	nonsense	c.591	p.Y197*	1.000	pfam_SH2,smart_SH2,pirsf_Tyr_Pase_non-rcpt_typ-6/11,pfscan_SH2,prints_SH2	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_SH2,smart_SH2,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-6/11,pfscan_SH2,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_SH2	-	no_errors	PTPN11	HGNC	ENSG00000179295				78	0	0	41	3	6.81818
P2RX2	0	genome.wustl.edu	37	12	133196330	133196330	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	12	133196330	133196330	C	A	SNP	P2RX2	ENST00000343948	human	ensembl	74_37	+1	known	nonsense	c.375	p.C125*	1.000	pfam_P2X_purnocptor,tigrfam_P2X_purnocptor	pfam_P2X_purnocptor,prints_P2X2_purnocptor,prints_P2X_purnocptor,tigrfam_P2X_purnocptor	-	no_errors	P2RX2	HGNC	ENSG00000187848				67	0	0	14	5	26.3158
PLCZ1	0	genome.wustl.edu	37	12	18841074	18841074	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	12	18841074	18841074	C	A	SNP	PLCZ1	ENST00000266505	human	ensembl	74_37	-1	known	missense	c.1540	p.G514C	0.996	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,pfscan_EF_hand_dom,pfscan_C2_dom,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCZ1	HGNC	ENSG00000139151				181	0	0	60	4	6.25
MIR920	0	genome.wustl.edu	37	12	24365393	24365393	+	RNA	SNP	A	A	C			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	12	24365393	24365393	A	C	SNP	MIR920	ENST00000401373	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.012	-	-	-	no_errors	MIR920	HGNC	ENSG00000216192				196	0	0	58	24	29.2683
KRT75	0	genome.wustl.edu	37	12	52822136	52822136	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	12	52822136	52822136	C	G	SNP	KRT75	ENST00000252245	human	ensembl	74_37	-1	known	missense	c.1286	p.R429P	0.997	pfam_IF	pfam_IF,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT75	HGNC	ENSG00000170454				140	1	0.70922	33	29	46.7742
CEP290	0	genome.wustl.edu	37	12	88530428	88530428	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	12	88530428	88530428	T	C	SNP	CEP290	ENST00000309041	human	ensembl	74_37	-1	known	missense	c.433	p.N145D	1.000	NULL	NULL	-	no_errors	CEP290	HGNC	ENSG00000198707				210	0	0	56	24	30
CLEC2D	0	genome.wustl.edu	37	12	9847417	9847417	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	12	9847417	9847417	A	G	SNP	CLEC2D	ENST00000290855	human	ensembl	74_37	+1	known	missense	c.523	p.R175G	0.014	superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,pfam_Herpes_UL45-like,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	CLEC2D	HGNC	ENSG00000069493				92	0	0	36	15	29.4118
ATP8A2	0	genome.wustl.edu	37	13	26153950	26153950	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	13	26153950	26153950	G	T	SNP	ATP8A2	ENST00000381655	human	ensembl	74_37	+1	known	missense	c.1872	p.L624F	1.000	superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP8A2	HGNC	ENSG00000132932				157	1	0.632911	53	53	50
FREM2	0	genome.wustl.edu	37	13	39262883	39262883	+	Silent	SNP	T	T	C			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	13	39262883	39262883	T	C	SNP	FREM2	ENST00000280481	human	ensembl	74_37	+1	known	silent	c.1402	p.L468	0.992	NULL	pfam_Calx_beta,superfamily_Cadherin-like,smart_Calx_beta	-	no_errors	FREM2	HGNC	ENSG00000150893				104	0	0	47	10	17.5439
FREM2	0	genome.wustl.edu	37	13	39435669	39435669	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	13	39435669	39435669	A	C	SNP	FREM2	ENST00000280481	human	ensembl	74_37	+1	known	missense	c.7621	p.K2541Q	1.000	NULL	pfam_Calx_beta,superfamily_Cadherin-like,smart_Calx_beta	-	no_errors	FREM2	HGNC	ENSG00000150893				114	0	0	76	20	20.8333
PCDH17	0	genome.wustl.edu	37	13	58208116	58208116	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	13	58208116	58208116	T	C	SNP	PCDH17	ENST00000377918	human	ensembl	74_37	+1	known	missense	c.1436	p.L479P	1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH17	HGNC	ENSG00000118946				74	0	0	25	5	16.6667
COMMD6	0	genome.wustl.edu	37	13	76111694	76111694	+	RNA	SNP	G	G	C			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	13	76111694	76111694	G	C	SNP	COMMD6	ENST00000471682	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	COMMD6	HGNC	ENSG00000188243				20	0	0	2	7	77.7778
POTEG	0	genome.wustl.edu	37	14	19571357	19571357	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	14	19571357	19571357	T	C	SNP	POTEG	ENST00000409832	human	ensembl	74_37	+1	known	missense	c.1136	p.L379S	0.021	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	POTEG	HGNC	ENSG00000222036				41	0	0	8	3	27.2727
CHD8	0	genome.wustl.edu	37	14	21861850	21861850	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	14	21861850	21861850	C	T	SNP	CHD8	ENST00000399982	human	ensembl	74_37	-1	known	missense	c.6104	p.R2035Q	0.989	NULL	pfam_SNF2_N,pfam_Chromo_domain,pfam_BRK_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD8	HGNC	ENSG00000100888				48	0	0	24	13	35.1351
BNIP3P1	0	genome.wustl.edu	37	14	28733788	28733788	+	RNA	SNP	A	A	G			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	14	28733788	28733788	A	G	SNP	BNIP3P1	ENST00000550043	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.979	-	-	-	no_errors	BNIP3P1	HGNC	ENSG00000197358				54	0	0	8	8	50
POMT2	0	genome.wustl.edu	37	14	77751348	77751348	+	Silent	SNP	G	G	A			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	14	77751348	77751348	G	A	SNP	POMT2	ENST00000261534	human	ensembl	74_37	-1	known	silent	c.1521	p.Y507	0.959	pfam_MIR_motif,superfamily_MIR_motif,smart_MIR_motif,pfscan_MIR_motif	pfam_Glyco_trans_39,pfam_MIR_motif,superfamily_MIR_motif,smart_MIR_motif,pfscan_MIR_motif	-	no_errors	POMT2	HGNC	ENSG00000009830				78	0	0	26	8	23.5294
DNM1P47	0	genome.wustl.edu	37	15	102299958	102299958	+	RNA	SNP	C	C	G			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	15	102299958	102299958	C	G	SNP	DNM1P47	ENST00000561463	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.996	-	-	-	no_errors	DNM1P47	HGNC	ENSG00000259660				20	0	0	12	3	20
NDN	0	genome.wustl.edu	37	15	23932080	23932080	+	Silent	SNP	C	C	T			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	15	23932080	23932080	C	T	SNP	NDN	ENST00000331837	human	ensembl	74_37	-1	known	silent	c.285	p.P95	0.943	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	NDN	HGNC	ENSG00000182636				56	0	0	26	21	44.6809
CASC5	0	genome.wustl.edu	37	15	40914465	40914465	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	15	40914465	40914465	C	A	SNP	CASC5	ENST00000346991	human	ensembl	74_37	+1	known	missense	c.2081	p.T694K	0.004	NULL	NULL	-	no_errors	CASC5	HGNC	ENSG00000137812				171	1	0.581395	96	8	7.69231
GRAMD2	0	genome.wustl.edu	37	15	72455726	72455726	+	Silent	SNP	C	C	T			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	15	72455726	72455726	C	T	SNP	GRAMD2	ENST00000309731	human	ensembl	74_37	-1	known	silent	c.837	p.P279	0.000	NULL	pfam_GRAM,smart_GRAM	-	no_errors	GRAMD2	HGNC	ENSG00000175318				183	0	0	82	22	21.1538
GOLGA6D	0	genome.wustl.edu	37	15	75580704	75580704	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	15	75580704	75580704	G	C	SNP	GOLGA6D	ENST00000434739	human	ensembl	74_37	+1	known	missense	c.563	p.R188T	0.998	NULL	NULL	-	no_errors	GOLGA6D	HGNC	ENSG00000140478				129	0	0	103	29	21.9697
SEMA4B	0	genome.wustl.edu	37	15	90771576	90771576	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	15	90771576	90771576	C	T	SNP	SEMA4B	ENST00000332496	human	ensembl	74_37	+1	known	missense	c.2215	p.R739W	1.000	NULL	pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,pfscan_Semap_dom	-	no_errors	SEMA4B	HGNC	ENSG00000185033				35	0	0	24	5	17.2414
XPO6	0	genome.wustl.edu	37	16	28112970	28112970	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	16	28112970	28112970	C	T	SNP	XPO6	ENST00000304658	human	ensembl	74_37	-1	known	missense	c.3085	p.V1029M	1.000	superfamily_ARM-type_fold	pfam_Exportin-1/Importin-b-like,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	XPO6	HGNC	ENSG00000169180				77	0	0	35	9	20.4545
ZSCAN10	0	genome.wustl.edu	37	16	3139328	3139328	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	16	3139328	3139328	C	T	SNP	ZSCAN10	ENST00000252463	human	ensembl	74_37	-1	known	missense	c.1942	p.A648T	0.916	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN10	HGNC	ENSG00000130182				92	0	0	22	16	42.1053
ZSCAN10	0	genome.wustl.edu	37	16	3140172	3140172	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	16	3140172	3140172	C	G	SNP	ZSCAN10	ENST00000252463	human	ensembl	74_37	-1	known	missense	c.1098	p.K366N	0.804	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN10	HGNC	ENSG00000130182				199	0	0	35	27	43.5484
CORO7-PAM16	0	genome.wustl.edu	37	16	4411080	4411080	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	16	4411080	4411080	G	A	SNP	CORO7-PAM16	ENST00000572467	human	ensembl	74_37	-1	known	missense	c.1781	p.T594M	0.823	pfam_WD40_repeat,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_DUF1900,pfam_WD40_repeat,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CORO7-PAM16	HGNC	ENSG00000103426				96	0	0	41	10	19.6078
CDH8	0	genome.wustl.edu	37	16	61761004	61761004	+	Silent	SNP	G	G	A			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	16	61761004	61761004	G	A	SNP	CDH8	ENST00000577390	human	ensembl	74_37	-1	known	silent	c.1530	p.P510	1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH8	HGNC	ENSG00000150394				184	0	0	82	87	51.4793
CDH11	0	genome.wustl.edu	37	16	64981820	64981820	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	16	64981820	64981820	G	A	SNP	CDH11	ENST00000268603	human	ensembl	74_37	-1	known	missense	c.2077	p.R693C	1.000	pfam_Cadherin_cytoplasmic-dom	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH11	HGNC	ENSG00000140937				261	0	0	154	46	23
WFIKKN1	0	genome.wustl.edu	37	16	683049	683049	+	Silent	SNP	G	G	A			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	16	683049	683049	G	A	SNP	WFIKKN1	ENST00000319070	human	ensembl	74_37	+1	known	silent	c.639	p.P213	0.363	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Prot_inh_Kunz-m,pfam_Ig_I-set,pfam_Ig_V-set,pfam_WAP-type_4-diS_core,pfam_Kazal_dom,pfam_Immunoglobulin,pfam_Netrin_module_non-TIMP,superfamily_TIMP-like_OB-fold,superfamily_Prot_inh_Kunz-m,superfamily_WAP-type_4-diS_core,smart_WAP-type_4-diS_core,smart_Ig_sub,smart_Ig_sub2,smart_Prot_inh_Kunz-m,pfscan_Netrin_domain,pfscan_Prot_inh_Kunz-m,pfscan_Ig-like_dom,prints_Prot_inh_Kunz-m	-	no_errors	WFIKKN1	HGNC	ENSG00000127578				76	0	0	41	13	24.0741
GAS8	0	genome.wustl.edu	37	16	90099328	90099328	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	16	90099328	90099328	G	A	SNP	GAS8	ENST00000268699	human	ensembl	74_37	+1	known	missense	c.491	p.R164Q	0.998	NULL	NULL	-	no_errors	GAS8	HGNC	ENSG00000141013				40	0	0	21	4	16
UBBP4	0	genome.wustl.edu	37	17	21731181	21731181	+	Silent	SNP	C	C	T			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	17	21731181	21731181	C	T	SNP	UBBP4	ENST00000578713	human	ensembl	74_37	+1	putative	silent	c.483	p.T161	0.996	pfam_Ubiquitin_dom,pfam_Rad60/SUMO_like,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup	pfam_Ubiquitin_dom,pfam_Rad60/SUMO_like,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup,prints_Ubiquitin	-	no_errors	UBBP4	HGNC	ENSG00000263563				162	1	0.613497	20	17	45.9459
TNFAIP1	0	genome.wustl.edu	37	17	26671447	26671447	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	17	26671447	26671447	A	T	SNP	TNFAIP1	ENST00000226225	human	ensembl	74_37	+1	known	missense	c.772	p.T258S	1.000	NULL	pfam_T1-type_BTB,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	-	no_errors	TNFAIP1	HGNC	ENSG00000109079				83	0	0	35	13	27.0833
CNTNAP1	0	genome.wustl.edu	37	17	40837321	40837321	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	17	40837321	40837321	G	A	SNP	CNTNAP1	ENST00000264638	human	ensembl	74_37	+1	known	missense	c.598	p.A200T	0.997	superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,superfamily_Fibrinogen_a/b/g_C_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP1	HGNC	ENSG00000108797				117	0	0	41	16	28.0702
AOC4P	0	genome.wustl.edu	37	17	41020639	41020639	+	RNA	SNP	C	C	G			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	17	41020639	41020639	C	G	SNP	AOC4P	ENST00000562301	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.060	-	-	-	no_errors	AOC4P	HGNC	ENSG00000260105				59	0	0	28	16	36.3636
QRICH2	0	genome.wustl.edu	37	17	74288944	74288944	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	17	74288944	74288944	A	G	SNP	QRICH2	ENST00000262765	human	ensembl	74_37	-1	known	missense	c.1366	p.W456R	0.000	NULL	NULL	-	no_errors	QRICH2	HGNC	ENSG00000129646				70	0	0	27	6	18.1818
TP53	0	genome.wustl.edu	37	17	7578212	7578212	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	17	7578212	7578212	G	A	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	nonsense	c.637	p.R213*	0.893	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510				92	0	0	20	13	39.3939
TMC8	0	genome.wustl.edu	37	17	76127802	76127802	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	17	76127802	76127802	G	A	SNP	TMC8	ENST00000318430	human	ensembl	74_37	+1	known	missense	c.133	p.D45N	0.998	NULL	pfam_TMC	-	no_errors	TMC8	HGNC	ENSG00000167895				18	0	0	2	3	60
CDH7	0	genome.wustl.edu	37	18	63530059	63530059	+	Silent	SNP	A	A	G			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	18	63530059	63530059	A	G	SNP	CDH7	ENST00000323011	human	ensembl	74_37	+1	known	silent	c.1770	p.V590	0.001	smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH7	HGNC	ENSG00000081138				61	0	0	16	5	23.8095
LAMA1	0	genome.wustl.edu	37	18	7043226	7043226	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	18	7043226	7043226	T	G	SNP	LAMA1	ENST00000389658	human	ensembl	74_37	-1	known	missense	c.1155	p.K385N	0.634	pfam_EGF_laminin,smart_EGF_laminin	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_B_type_IV,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_II,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA1	HGNC	ENSG00000101680				344	0	0	133	42	24
ZNF407	0	genome.wustl.edu	37	18	72346747	72346747	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	18	72346747	72346747	C	T	SNP	ZNF407	ENST00000299687	human	ensembl	74_37	+1	known	missense	c.3772	p.R1258C	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,smart_Znf_U1,pfscan_Znf_C2H2	-	no_errors	ZNF407	HGNC	ENSG00000215421				76	0	0	25	6	19.3548
ATP9B	0	genome.wustl.edu	37	18	77096644	77096644	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	18	77096644	77096644	G	C	SNP	ATP9B	ENST00000426216	human	ensembl	74_37	+1	known	missense	c.2045	p.R682P	0.832	pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP9B	HGNC	ENSG00000166377				69	0	0	7	15	68.1818
ZNF844	0	genome.wustl.edu	37	19	12187502	12187502	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	19	12187502	12187502	A	G	SNP	ZNF844	ENST00000439326	human	ensembl	74_37	+1	known	missense	c.1567	p.K523E	0.004	NULL	pfam_Krueppel-associated_box,pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF844	HGNC	ENSG00000223547				74	0	0	37	4	9.7561
CHERP	0	genome.wustl.edu	37	19	16638979	16638979	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	19	16638979	16638979	C	T	SNP	CHERP	ENST00000546361	human	ensembl	74_37	-1	known	missense	c.1217	p.R406Q	1.000	NULL	pfam_Surp,pfam_G_patch_dom,pfam_RNA_pol_II-bd,superfamily_Surp,superfamily_ENTH_VHS,smart_Surp,smart_G_patch_dom,pfscan_Surp,pfscan_G_patch_dom	-	no_errors	CHERP	HGNC	ENSG00000085872				175	0	0	26	38	59.375
NWD1	0	genome.wustl.edu	37	19	16860087	16860087	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	19	16860087	16860087	G	C	SNP	NWD1	ENST00000379808	human	ensembl	74_37	+1	known	missense	c.634	p.A212P	0.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_P-loop_NTPase,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NWD1	HGNC	ENSG00000188039				162	1	0.613497	72	4	5.26316
MRPL34	0	genome.wustl.edu	37	19	17416747	17416747	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	19	17416747	17416747	G	C	SNP	MRPL34	ENST00000252602	human	ensembl	74_37	+1	known	missense	c.46	p.A16P	0.000	NULL	pfam_Ribosomal_L34,tigrfam_Ribosomal_L34	-	no_errors	MRPL34	HGNC	ENSG00000130312				170	0	0	26	30	53.5714
RPL18A	0	genome.wustl.edu	37	19	17972164	17972164	+	Silent	SNP	C	C	A			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	19	17972164	17972164	C	A	SNP	RPL18A	ENST00000222247	human	ensembl	74_37	+1	known	silent	c.81	p.L27	0.945	pfam_Ribosomal_L18a/LX	pfam_Ribosomal_L18a/LX	-	no_errors	RPL18A	HGNC	ENSG00000105640				48	0	0	23	3	11.5385
CRTC1	0	genome.wustl.edu	37	19	18886480	18886480	+	Silent	SNP	C	C	T			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	19	18886480	18886480	C	T	SNP	CRTC1	ENST00000338797	human	ensembl	74_37	+1	known	silent	c.1590	p.A530	0.993	NULL	NULL	-	no_errors	CRTC1	HGNC	ENSG00000105662				74	0	0	49	5	9.25926
ZNF493	0	genome.wustl.edu	37	19	21606384	21606384	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	19	21606384	21606384	T	A	SNP	ZNF493	ENST00000355504	human	ensembl	74_37	+1	known	missense	c.539	p.L180H	0.483	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF493	HGNC	ENSG00000196268				123	1	0.806452	39	17	30.3571
ZNF43	0	genome.wustl.edu	37	19	22002007	22002007	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	19	22002007	22002007	A	G	SNP	ZNF43	ENST00000354959	human	ensembl	74_37	-1	known	missense	c.20	p.M7T	0.985	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF43	HGNC	ENSG00000198521				235	0	0	47	27	36.4865
ZNF208	0	genome.wustl.edu	37	19	22154953	22154953	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	19	22154953	22154953	A	C	SNP	ZNF208	ENST00000397126	human	ensembl	74_37	-1	novel	missense	c.2883	p.S961R	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF208	HGNC	ENSG00000160321				49	0	0	13	4	23.5294
ZNF208	0	genome.wustl.edu	37	19	22156121	22156121	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	19	22156121	22156121	T	G	SNP	ZNF208	ENST00000397126	human	ensembl	74_37	-1	novel	missense	c.1715	p.K572T	0.001	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF208	HGNC	ENSG00000160321				76	0	0	16	13	44.8276
TSHZ3	0	genome.wustl.edu	37	19	31768179	31768179	+	Silent	SNP	G	G	A			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	19	31768179	31768179	G	A	SNP	TSHZ3	ENST00000240587	human	ensembl	74_37	-1	known	silent	c.2520	p.R840	0.892	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	TSHZ3	HGNC	ENSG00000121297				201	0	0	204	55	21.2355
C19orf55	0	genome.wustl.edu	37	19	36258765	36258765	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	19	36258765	36258765	G	A	SNP	C19orf55	ENST00000396908	human	ensembl	74_37	+1	known	missense	c.1018	p.E340K	0.001	NULL	NULL	-	no_errors	C19orf55	HGNC	ENSG00000167595				53	0	0	17	6	26.087
ZNF382	0	genome.wustl.edu	37	19	37117123	37117123	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	19	37117123	37117123	A	C	SNP	ZNF382	ENST00000292928	human	ensembl	74_37	+1	known	missense	c.324	p.K108N	0.287	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF382	HGNC	ENSG00000161298				92	0	0	24	13	35.1351
ERF	0	genome.wustl.edu	37	19	42753425	42753425	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	19	42753425	42753425	G	A	SNP	ERF	ENST00000222329	human	ensembl	74_37	-1	known	missense	c.839	p.S280L	0.999	NULL	pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	ERF	HGNC	ENSG00000105722				19	0	0	3	7	70
ZNF229	0	genome.wustl.edu	37	19	44933212	44933212	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	19	44933212	44933212	G	A	SNP	ZNF229	ENST00000588931	human	ensembl	74_37	-1	known	missense	c.1744	p.R582W	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF229	HGNC	ENSG00000167383				152	0	0	67	18	21.1765
BCAT2	0	genome.wustl.edu	37	19	49310309	49310309	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	19	49310309	49310309	G	A	SNP	BCAT2	ENST00000316273	human	ensembl	74_37	-1	known	missense	c.47	p.S16F	0.007	NULL	pfam_Aminotrans_IV,superfamily_Aminotrans_IV,pirsf_B_amino_transII,tigrfam_B_amino_transII	-	no_errors	BCAT2	HGNC	ENSG00000105552				109	0	0	30	15	33.3333
KLK4	0	genome.wustl.edu	37	19	51411894	51411894	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	19	51411894	51411894	G	A	SNP	KLK4	ENST00000324041	human	ensembl	74_37	-1	known	missense	c.416	p.S139L	0.002	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	KLK4	HGNC	ENSG00000167749				140	0	0	35	16	31.3725
SIGLEC10	0	genome.wustl.edu	37	19	51920007	51920007	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	19	51920007	51920007	G	A	SNP	SIGLEC10	ENST00000339313	human	ensembl	74_37	-1	known	nonsense	c.619	p.Q207*	0.930	pfam_CD80_C2-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	SIGLEC10	HGNC	ENSG00000142512				77	0	0	23	12	34.2857
ZSCAN18	0	genome.wustl.edu	37	19	58600106	58600106	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	19	58600106	58600106	T	G	SNP	ZSCAN18	ENST00000600404	human	ensembl	74_37	-1	known	missense	c.670	p.S224R	0.020	NULL	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN18	HGNC	ENSG00000121413				121	0	0	35	27	43.5484
MYO1F	0	genome.wustl.edu	37	19	8642205	8642205	+	RNA	SNP	G	G	T			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	19	8642205	8642205	G	T	SNP	MYO1F	ENST00000595046	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.026	-	-	-	no_errors	MYO1F	HGNC	ENSG00000142347				51	0	0	19	2	9.52381
MUC16	0	genome.wustl.edu	37	19	9059857	9059857	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	19	9059857	9059857	T	A	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.27589	p.T9197S	0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				161	0	0	106	39	26.8966
MUC16	0	genome.wustl.edu	37	19	9072191	9072191	+	Silent	SNP	T	T	G			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	19	9072191	9072191	T	G	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	silent	c.15255	p.T5085	0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				251	0	0	116	77	39.8964
MUC16	0	genome.wustl.edu	37	19	9073279	9073279	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	19	9073279	9073279	C	A	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.14167	p.A4723S	0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				260	0	0	138	32	18.8235
TAF1B	0	genome.wustl.edu	37	2	10059894	10059894	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	2	10059894	10059894	T	G	SNP	TAF1B	ENST00000263663	human	ensembl	74_37	+1	known	missense	c.1510	p.S504A	0.095	NULL	pfam_TF_Rrn7	-	no_errors	TAF1B	HGNC	ENSG00000115750				76	0	0	15	14	48.2759
TGFBRAP1	0	genome.wustl.edu	37	2	105924384	105924384	+	Silent	SNP	G	G	A			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	2	105924384	105924384	G	A	SNP	TGFBRAP1	ENST00000258449	human	ensembl	74_37	-1	known	silent	c.375	p.N125	0.940	pfam_Citron	pfam_VPS39/TGF_beta_rcpt-assoc_2,pfam_VPS39/TGF_beta_rcpt-assoc_1,pfam_Clathrin_H-chain/VPS_repeat,pfam_Citron	-	no_errors	TGFBRAP1	HGNC	ENSG00000135966				249	0	0	75	37	33.0357
C2orf40	0	genome.wustl.edu	37	2	106694260	106694260	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	2	106694260	106694260	C	T	SNP	C2orf40	ENST00000238044	human	ensembl	74_37	+1	known	nonsense	c.325	p.R109*	0.133	NULL	NULL	-	no_errors	C2orf40	HGNC	ENSG00000119147				155	1	0.641026	93	23	19.8276
CNTNAP5	0	genome.wustl.edu	37	2	125262112	125262112	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	2	125262112	125262112	C	T	SNP	CNTNAP5	ENST00000431078	human	ensembl	74_37	+1	known	missense	c.1303	p.R435C	0.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP5	HGNC	ENSG00000155052				74	0	0	28	11	28.2051
LRP1B	0	genome.wustl.edu	37	2	141108422	141108422	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	2	141108422	141108422	T	C	SNP	LRP1B	ENST00000389484	human	ensembl	74_37	-1	known	missense	c.11836	p.I3946V	0.986	superfamily_Growth_fac_rcpt_N_dom	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702				97	0	0	55	7	11.2903
ZEB2	0	genome.wustl.edu	37	2	145156170	145156170	+	Silent	SNP	A	A	G			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	2	145156170	145156170	A	G	SNP	ZEB2	ENST00000303660	human	ensembl	74_37	-1	known	silent	c.2584	p.L862	1.000	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZEB2	HGNC	ENSG00000169554				172	0	0	52	18	25.7143
ZEB2	0	genome.wustl.edu	37	2	145274932	145274932	+	RNA	SNP	C	C	T			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	2	145274932	145274932	C	T	SNP	ZEB2	ENST00000434448	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	ZEB2	HGNC	ENSG00000169554				90	0	0	64	21	24.7059
RBM43	0	genome.wustl.edu	37	2	152107515	152107515	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	2	152107515	152107515	G	A	SNP	RBM43	ENST00000331426	human	ensembl	74_37	-1	known	missense	c.979	p.L327F	0.000	NULL	pfscan_RRM_dom	-	no_errors	RBM43	HGNC	ENSG00000184898				137	0	0	65	22	25.2874
SCN1A	0	genome.wustl.edu	37	2	166901827	166901827	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	2	166901827	166901827	G	A	SNP	SCN1A	ENST00000303395	human	ensembl	74_37	-1	known	missense	c.1388	p.T463M	0.871	NULL	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_a1su,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN1A	HGNC	ENSG00000144285				151	0	0	47	25	34.7222
GAD1	0	genome.wustl.edu	37	2	171687619	171687619	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	2	171687619	171687619	A	C	SNP	GAD1	ENST00000358196	human	ensembl	74_37	+1	known	missense	c.464	p.N155T	1.000	pfam_PyrdxlP-dep_de-COase,superfamily_PyrdxlP-dep_Trfase	pfam_PyrdxlP-dep_de-COase,pfam_Aminotrans_V/Cys_dSase,pfam_ArAA_b-elim_lyase/Thr_aldolase,superfamily_PyrdxlP-dep_Trfase	-	no_errors	GAD1	HGNC	ENSG00000128683				158	0	0	85	38	30.8943
TTN	0	genome.wustl.edu	37	2	179578722	179578722	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	2	179578722	179578722	T	G	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.22931	p.K7644T	1.000	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				67	0	0	21	10	32.2581
TTN	0	genome.wustl.edu	37	2	179604456	179604456	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	2	179604456	179604456	T	G	SNP	TTN	ENST00000342175	human	ensembl	74_37	-1	known	missense	c.12991	p.S4331R	0.000	superfamily_RNaseH-like_dom	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				380	0	0	139	61	30.5
ZNF804A	0	genome.wustl.edu	37	2	185803437	185803437	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	2	185803437	185803437	A	T	SNP	ZNF804A	ENST00000302277	human	ensembl	74_37	+1	known	missense	c.3314	p.Q1105L	1.000	NULL	pfam_Znf_C2H2_jaz	-	no_errors	ZNF804A	HGNC	ENSG00000170396				141	0	0	52	9	14.7541
ITGAV	0	genome.wustl.edu	37	2	187466848	187466848	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	2	187466848	187466848	C	T	SNP	ITGAV	ENST00000261023	human	ensembl	74_37	+1	known	missense	c.286	p.R96W	0.001	smart_Int_alpha_beta-p	pfam_Integrin_alpha-2,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGAV	HGNC	ENSG00000138448				83	0	0	31	13	29.5455
AOX1	0	genome.wustl.edu	37	2	201485953	201485953	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	2	201485953	201485953	T	C	SNP	AOX1	ENST00000374700	human	ensembl	74_37	+1	known	missense	c.1985	p.F662S	0.246	pfam_Ald_Oxase/Xan_DH_a/b,superfamily_Ald_Oxase/Xan_DH_a/b,pirsf_Ald_Oxase/xanthine_DH,tigrfam_Aldehyde_oxidase	pfam_AldOxase/xan_DH_Mopterin-bd,pfam_Mopterin_DH_FAD-bd,pfam_Ald_Oxase/Xan_DH_a/b,pfam_2Fe-2S-bd,pfam_CO_DH_flav_C,pfam_2Fe-2S_ferredoxin-type,superfamily_AldOxase/xan_DH_Mopterin-bd,superfamily_FAD-bd_2,superfamily_Ald_Oxase/Xan_DH_a/b,superfamily_2Fe-2S-bd,superfamily_CO_DH_flav_C,superfamily_2Fe-2S_ferredoxin-type,pirsf_Ald_Oxase/xanthine_DH,pfscan_2Fe-2S_ferredoxin-type,tigrfam_Aldehyde_oxidase	-	no_errors	AOX1	HGNC	ENSG00000138356				133	0	0	57	20	25.974
MAP2	0	genome.wustl.edu	37	2	210559838	210559838	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	2	210559838	210559838	G	C	SNP	MAP2	ENST00000360351	human	ensembl	74_37	+1	known	missense	c.2944	p.E982Q	0.937	pfam_MAP2_projctn	pfam_MAP2_projctn,pfam_MAP_tubulin-bd_rpt	-	no_errors	MAP2	HGNC	ENSG00000078018				154	0	0	58	16	21.6216
ERBB4	0	genome.wustl.edu	37	2	212248599	212248599	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	2	212248599	212248599	T	G	SNP	ERBB4	ENST00000342788	human	ensembl	74_37	-1	known	missense	c.3668	p.K1223T	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	ERBB4	HGNC	ENSG00000178568				307	0	0	158	55	25.8216
VWC2L	0	genome.wustl.edu	37	2	215440504	215440504	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	2	215440504	215440504	A	C	SNP	VWC2L	ENST00000312504	human	ensembl	74_37	+1	known	missense	c.629	p.Q210P	1.000	NULL	smart_VWF_C,pfscan_VWF_C	-	no_errors	VWC2L	HGNC	ENSG00000174453				329	0	0	168	41	19.6172
COL4A4	0	genome.wustl.edu	37	2	227896700	227896700	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	2	227896700	227896700	G	A	SNP	COL4A4	ENST00000396625	human	ensembl	74_37	-1	known	missense	c.3778	p.P1260S	0.462	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A4	HGNC	ENSG00000081052				54	0	0	10	7	41.1765
C2orf16	0	genome.wustl.edu	37	2	27801239	27801239	+	Silent	SNP	C	C	T			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	2	27801239	27801239	C	T	SNP	C2orf16	ENST00000408964	human	ensembl	74_37	+1	known	silent	c.1800	p.I600	0.047	NULL	NULL	-	no_errors	C2orf16	HGNC	ENSG00000221843				74	0	0	21	3	12.5
DNAH6	0	genome.wustl.edu	37	2	84800599	84800599	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	2	84800599	84800599	T	G	SNP	DNAH6	ENST00000237449	human	ensembl	74_37	+1	known	missense	c.1812	p.I604M	0.932	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH6	HGNC	ENSG00000115423				137	0	0	42	10	19.2308
ESF1	0	genome.wustl.edu	37	20	13756707	13756707	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	20	13756707	13756707	C	T	SNP	ESF1	ENST00000202816	human	ensembl	74_37	-1	known	missense	c.847	p.E283K	0.146	NULL	pfam_NUC153	-	no_errors	ESF1	HGNC	ENSG00000089048				151	0	0	77	27	25.9615
PTPRA	0	genome.wustl.edu	37	20	2988067	2988067	+	Splice_Site	SNP	G	G	A			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	20	2988067	2988067	G	A	SNP	PTPRA	ENST00000425918	human	ensembl	74_37	+1	known	splice_site	c.939+1	e9+1	1.000	-	-	-	no_errors	PTPRA	HGNC	ENSG00000132670				127	0	0	143	26	15.3846
LZTS3	0	genome.wustl.edu	37	20	3146426	3146426	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	20	3146426	3146426	G	A	SNP	LZTS3	ENST00000329152	human	ensembl	74_37	-1	known	missense	c.1040	p.A347V	1.000	NULL	NULL	-	no_errors	LZTS3	Uniprot_gn	ENSG00000088899				20	0	0	6	3	33.3333
MYH7B	0	genome.wustl.edu	37	20	33577664	33577664	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	20	33577664	33577664	G	A	SNP	MYH7B	ENST00000262873	human	ensembl	74_37	+1	novel	missense	c.1835	p.R612Q	0.988	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Myosin_S1_N,superfamily_Prefoldin,superfamily_tRNA-bd_arm,superfamily_t-SNARE,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH7B	HGNC	ENSG00000078814				95	0	0	74	11	12.9412
EDEM2	0	genome.wustl.edu	37	20	33706370	33706370	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	20	33706370	33706370	T	C	SNP	EDEM2	ENST00000540582	human	ensembl	74_37	-1	known	missense	c.1144	p.K382E	0.000	NULL	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47,prints_Glyco_hydro_47	-	no_errors	EDEM2	HGNC	ENSG00000088298				58	0	0	27	21	43.75
LBP	0	genome.wustl.edu	37	20	36978001	36978001	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	20	36978001	36978001	C	A	SNP	LBP	ENST00000217407	human	ensembl	74_37	+1	known	missense	c.175	p.L59M	0.961	pfam_Lipid-bd_serum_glycop_N,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_N	pfam_Lipid-bd_serum_glycop_C,pfam_Lipid-bd_serum_glycop_N,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_N,smart_Lipid-bd_serum_glycop_C	-	no_errors	LBP	HGNC	ENSG00000129988				34	0	0	33	5	13.1579
LPIN3	0	genome.wustl.edu	37	20	39977772	39977772	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	20	39977772	39977772	A	G	SNP	LPIN3	ENST00000373257	human	ensembl	74_37	+1	known	missense	c.598	p.I200V	1.000	NULL	pfam_LNS2,pfam_Lipin_N,superfamily_HAD-like_dom,smart_LNS2	-	no_errors	LPIN3	HGNC	ENSG00000132793				235	1	0.423729	205	29	12.3932
CSTF1	0	genome.wustl.edu	37	20	54970640	54970640	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	20	54970640	54970640	G	A	SNP	CSTF1	ENST00000217109	human	ensembl	74_37	+1	known	missense	c.32	p.R11H	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CSTF1	HGNC	ENSG00000101138				77	0	0	45	7	13.4615
ZNF831	0	genome.wustl.edu	37	20	57766527	57766527	+	Silent	SNP	C	C	T			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	20	57766527	57766527	C	T	SNP	ZNF831	ENST00000371030	human	ensembl	74_37	+1	novel	silent	c.453	p.R151	0.983	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF831	HGNC	ENSG00000124203				288	0	0	188	83	30.6273
COL20A1	0	genome.wustl.edu	37	20	61958163	61958163	+	Silent	SNP	C	C	T			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	20	61958163	61958163	C	T	SNP	COL20A1	ENST00000326996	human	ensembl	74_37	+1	known	silent	c.3612	p.T1204	0.001	pfam_Collagen	pfam_Fibronectin_type3,pfam_VWF_A,pfam_Collagen,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL20A1	HGNC	ENSG00000101203				15	0	0	13	5	27.7778
ADAMTS5	0	genome.wustl.edu	37	21	28338124	28338124	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	21	28338124	28338124	T	C	SNP	ADAMTS5	ENST00000284987	human	ensembl	74_37	-1	known	missense	c.587	p.E196G	0.999	prints_Pept_M12B_ADAM-TS5	pfam_ADAM_spacer1,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Pept_M12B_ADAM-TS5,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS5	HGNC	ENSG00000154736				26	0	0	6	6	50
ADAMTS5	0	genome.wustl.edu	37	21	28338580	28338580	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	21	28338580	28338580	C	T	SNP	ADAMTS5	ENST00000284987	human	ensembl	74_37	-1	known	missense	c.131	p.R44H	0.950	pfam_Peptidase_M12B_N	pfam_ADAM_spacer1,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Pept_M12B_ADAM-TS5,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS5	HGNC	ENSG00000154736				32	0	0	8	3	27.2727
SMC1B	0	genome.wustl.edu	37	22	45767386	45767386	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	22	45767386	45767386	G	A	SNP	SMC1B	ENST00000357450	human	ensembl	74_37	-1	known	nonsense	c.2278	p.R760*	0.059	pfam_RecF/RecN/SMC_N,superfamily_P-loop_NTPase	pfam_RecF/RecN/SMC_N,pfam_SMC_hinge,superfamily_P-loop_NTPase,superfamily_SMC_hinge,superfamily_t-SNARE,smart_SMC_hinge	-	no_errors	SMC1B	HGNC	ENSG00000077935				90	0	0	28	10	26.3158
ATP2B2	0	genome.wustl.edu	37	3	10442664	10442664	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	3	10442664	10442664	C	T	SNP	ATP2B2	ENST00000352432	human	ensembl	74_37	-1	known	missense	c.754	p.V252M	1.000	pfam_ATPase_P-typ_transduc_dom_A,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_plasma,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP2B2	HGNC	ENSG00000157087				119	0	0	64	18	21.9512
SLC25A36	0	genome.wustl.edu	37	3	140692763	140692763	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	3	140692763	140692763	G	A	SNP	SLC25A36	ENST00000324194	human	ensembl	74_37	+1	known	missense	c.658	p.V220M	0.919	superfamily_Mt_carrier_dom	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier,prints_Mit_uncoupling	-	no_errors	SLC25A36	HGNC	ENSG00000114120				91	0	0	28	12	30
SI	0	genome.wustl.edu	37	3	164709261	164709261	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	3	164709261	164709261	T	G	SNP	SI	ENST00000264382	human	ensembl	74_37	-1	known	missense	c.4988	p.K1663T	0.000	pfam_Glyco_hydro_31	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Gal_mutarotase_SF_dom,smart_P_trefoil	-	no_errors	SI	HGNC	ENSG00000090402				122	0	0	27	6	18.1818
KCNMB2	0	genome.wustl.edu	37	3	178546118	178546118	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	3	178546118	178546118	T	G	SNP	KCNMB2	ENST00000358316	human	ensembl	74_37	+1	known	missense	c.380	p.L127R	0.998	pfam_K_chnl_Ca-activ_BK_bsu,prints_K_chnl_Ca-activ_BK_bsu	pfam_K_chnl_Ca-activ_BK_bsu,pfam_KCNMB2_ball_chain_dom,prints_K_chnl_Ca-activ_BK_bsu	-	no_errors	KCNMB2	HGNC	ENSG00000197584				65	0	0	30	7	18.9189
ECE2	0	genome.wustl.edu	37	3	184009886	184009886	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	3	184009886	184009886	G	A	SNP	ECE2	ENST00000402825	human	ensembl	74_37	+1	known	missense	c.2512	p.E838K	1.000	pfam_Peptidase_M13_C	pfam_Peptidase_M13_N,pfam_Peptidase_M13_C,pfam_Methyltransf_11,prints_Peptidase_M13_C	-	no_errors	ECE2	HGNC	ENSG00000145194				87	0	0	27	10	27.027
TMEM44	0	genome.wustl.edu	37	3	194331653	194331653	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	3	194331653	194331653	C	A	SNP	TMEM44	ENST00000392432	human	ensembl	74_37	-1	known	missense	c.1150	p.V384L	0.721	NULL	NULL	-	no_errors	TMEM44	HGNC	ENSG00000145014				26	0	0	15	10	40
MFI2	0	genome.wustl.edu	37	3	196746591	196746591	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	3	196746591	196746591	G	A	SNP	MFI2	ENST00000296351	human	ensembl	74_37	-1	known	missense	c.794	p.T265M	0.000	smart_Transferrin_fam	pfam_Transferrin_fam,smart_Transferrin_fam,prints_Transferrin_fam	-	no_errors	MFI2	HGNC	ENSG00000163975				170	0	0	56	20	26.3158
LOC220729	0	genome.wustl.edu	37	3	197348668	197348668	+	RNA	SNP	C	C	G			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	3	197348668	197348668	C	G	SNP	LOC220729	ENST00000414207	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	AC024560.3	Clone_based_vega_gene	ENSG00000214135				208	2	0.952381	73	4	5.19481
LIMD1	0	genome.wustl.edu	37	3	45677682	45677682	+	Silent	SNP	C	C	G			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	3	45677682	45677682	C	G	SNP	LIMD1	ENST00000273317	human	ensembl	74_37	+1	known	silent	c.1449	p.G483	1.000	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	LIMD1	HGNC	ENSG00000144791				506	0	0	176	77	30.4348
P4HTM	0	genome.wustl.edu	37	3	49042339	49042339	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	3	49042339	49042339	C	G	SNP	P4HTM	ENST00000343546	human	ensembl	74_37	+1	known	missense	c.933	p.S311R	0.096	smart_Pro_4_hyd_alph	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	P4HTM	HGNC	ENSG00000178467				168	0	0	54	14	20.5882
FAM212A	0	genome.wustl.edu	37	3	49842272	49842272	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	3	49842272	49842272	G	A	SNP	FAM212A	ENST00000333323	human	ensembl	74_37	+1	known	missense	c.716	p.R239K	1.000	NULL	NULL	-	no_errors	FAM212A	HGNC	ENSG00000185614				272	1	0.3663	68	34	33.3333
BHLHE40	0	genome.wustl.edu	37	3	5025133	5025133	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	3	5025133	5025133	C	T	SNP	BHLHE40	ENST00000256495	human	ensembl	74_37	+1	known	missense	c.995	p.A332V	1.000	NULL	pfam_bHLH_dom,pfam_Orange,superfamily_bHLH_dom,smart_bHLH_dom,smart_Orange_subgr,pfscan_Orange,pfscan_bHLH_dom	-	no_errors	BHLHE40	HGNC	ENSG00000134107				175	1	0.568182	57	21	26.9231
MAGI1	0	genome.wustl.edu	37	3	65344795	65344795	+	Silent	SNP	T	T	G			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	3	65344795	65344795	T	G	SNP	MAGI1	ENST00000330909	human	ensembl	74_37	-1	known	silent	c.3751	p.R1251	1.000	NULL	pfam_PDZ,pfam_WW_dom,pfam_GK/Ca_channel_bsu,superfamily_PDZ,superfamily_P-loop_NTPase,superfamily_WW_dom,smart_PDZ,smart_GK/Ca_channel_bsu,smart_WW_dom,pfscan_PDZ,pfscan_WW_dom,pfscan_Guanylate_kin-like	-	no_errors	MAGI1	HGNC	ENSG00000151276				402	0	0	87	44	33.5878
ST3GAL6	0	genome.wustl.edu	37	3	98489735	98489735	+	Silent	SNP	G	G	A			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	3	98489735	98489735	G	A	SNP	ST3GAL6	ENST00000394162	human	ensembl	74_37	+1	known	silent	c.102	p.V34	0.985	pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST3GAL6	HGNC	ENSG00000064225				124	0	0	38	15	28.3019
CMSS1	0	genome.wustl.edu	37	3	99895188	99895188	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	3	99895188	99895188	C	A	SNP	CMSS1	ENST00000421999	human	ensembl	74_37	+1	known	missense	c.685	p.P229T	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase	pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase	-	no_errors	CMSS1	HGNC	ENSG00000184220				95	0	0	13	2	13.3333
FSTL5	0	genome.wustl.edu	37	4	162307513	162307513	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	4	162307513	162307513	C	A	SNP	FSTL5	ENST00000306100	human	ensembl	74_37	-1	known	missense	c.1930	p.D644Y	1.000	NULL	pfam_Ig_I-set,pfam_Kazal_dom,pfam_Ig_V-set,smart_Kazal_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_EF_hand_dom,pfscan_Ig-like_dom	-	no_errors	FSTL5	HGNC	ENSG00000168843				70	0	0	26	21	44.6809
GALNTL6	0	genome.wustl.edu	37	4	173730599	173730599	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	4	173730599	173730599	G	A	SNP	GALNTL6	ENST00000506823	human	ensembl	74_37	+1	known	missense	c.641	p.R214Q	1.000	pfam_Glyco_trans_2	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNTL6	HGNC	ENSG00000174473				130	0	0	28	16	36.3636
GALNT7	0	genome.wustl.edu	37	4	174089995	174089995	+	Silent	SNP	G	G	A			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	4	174089995	174089995	G	A	SNP	GALNT7	ENST00000265000	human	ensembl	74_37	+1	known	silent	c.9	p.L3	1.000	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT7	HGNC	ENSG00000109586				67	0	0	23	2	8
FRG1	0	genome.wustl.edu	37	4	190878615	190878615	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	4	190878615	190878615	A	G	SNP	FRG1	ENST00000226798	human	ensembl	74_37	+1	known	missense	c.495	p.I165M	1.000	pfam_FRG1,superfamily_Actin_cross-linking	pfam_FRG1,pfam_Fascin-domain,superfamily_Actin_cross-linking	-	no_errors	FRG1	HGNC	ENSG00000109536				126	0	0	52	3	5.45455
RGS12	0	genome.wustl.edu	37	4	3318204	3318204	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	4	3318204	3318204	G	A	SNP	RGS12	ENST00000344733	human	ensembl	74_37	+1	known	missense	c.307	p.E103K	0.966	superfamily_PDZ	pfam_Raf-like_ras-bd,pfam_RGS_dom,pfam_PDZ,pfam_GoLoco_motif,superfamily_Regulat_G_prot_signal_superfam,superfamily_PDZ,smart_PDZ,smart_PTB/PI_dom,smart_Regulat_G_prot_signal_superfam,smart_Raf-like_ras-bd,smart_GoLoco_motif,pfscan_GoLoco_motif,pfscan_PDZ,pfscan_PTB/PI_dom,pfscan_Raf-like_ras-bd,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS12	HGNC	ENSG00000159788				142	0	0	19	14	42.4242
LOC401127	0	genome.wustl.edu	37	4	39482110	39482110	+	RNA	SNP	G	G	A			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	4	39482110	39482110	G	A	SNP	LOC401127	ENST00000513652	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-472B18.1	Clone_based_vega_gene	ENSG00000224097				65	0	0	14	3	17.6471
FRYL	0	genome.wustl.edu	37	4	48592824	48592824	+	Silent	SNP	G	G	A			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	4	48592824	48592824	G	A	SNP	FRYL	ENST00000358350	human	ensembl	74_37	-1	known	silent	c.1359	p.V453	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	FRYL	HGNC	ENSG00000075539				154	0	0	58	8	12.1212
STK32B	0	genome.wustl.edu	37	4	5468557	5468557	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	4	5468557	5468557	C	T	SNP	STK32B	ENST00000282908	human	ensembl	74_37	+1	known	missense	c.1037	p.P346L	0.983	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	STK32B	HGNC	ENSG00000152953				110	0	0	40	3	6.97674
MAPK10	0	genome.wustl.edu	37	4	87028500	87028500	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	4	87028500	87028500	G	A	SNP	MAPK10	ENST00000359221	human	ensembl	74_37	-1	known	missense	c.242	p.A81V	0.999	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_MAPK_JNK,pfscan_Prot_kinase_dom	-	no_errors	MAPK10	HGNC	ENSG00000109339				85	0	0	24	4	14.2857
APC	0	genome.wustl.edu	37	5	112151261	112151261	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	5	112151261	112151261	C	T	SNP	APC	ENST00000257430	human	ensembl	74_37	+1	known	nonsense	c.904	p.R302*	1.000	NULL	pfam_APC_basic_dom,pfam_EB1-bd,pfam_APC_Cys-rich_rpt,pfam_Armadillo,pfam_APC_dom,pfam_SAMP,pfam_APC_15aa_rpt,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	APC	HGNC	ENSG00000134982				98	0	0	28	11	28.2051
ZNF474	0	genome.wustl.edu	37	5	121488479	121488479	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	5	121488479	121488479	A	C	SNP	ZNF474	ENST00000296600	human	ensembl	74_37	+1	known	missense	c.794	p.K265T	1.000	NULL	pfscan_Znf_C2H2	-	no_errors	ZNF474	HGNC	ENSG00000164185				123	0	0	20	13	39.3939
SLC12A2	0	genome.wustl.edu	37	5	127510310	127510310	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	5	127510310	127510310	G	T	SNP	SLC12A2	ENST00000262461	human	ensembl	74_37	+1	known	missense	c.2881	p.D961Y	0.982	tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease/SLC12A_dom,pfam_AA_permease_N,prints_Na/K/Cl_cotranspt1,prints_Na/K/Cl_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A2	HGNC	ENSG00000064651				81	0	0	17	9	34.6154
BRD8	0	genome.wustl.edu	37	5	137503739	137503739	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	5	137503739	137503739	G	A	SNP	BRD8	ENST00000254900	human	ensembl	74_37	-1	known	missense	c.671	p.S224F	1.000	NULL	pfam_Bromodomain,superfamily_Bromodomain,superfamily_Peptidase_M20_dimer,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRD8	HGNC	ENSG00000112983				196	0	0	47	21	30.8824
ENSG00000255622	0	genome.wustl.edu	37	5	140536961	140536961	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	5	140536961	140536961	G	A	SNP	ENSG00000255622	ENST00000539533	human	ensembl	74_37	+1	known	missense	c.1385	p.R462H	0.004	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB17	Uniprot_gn	ENSG00000255622				353	0	0	51	52	50.4854
PCDHGB8P	0	genome.wustl.edu	37	5	140807341	140807341	+	RNA	SNP	G	G	A			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	5	140807341	140807341	G	A	SNP	PCDHGB8P	ENST00000502926	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PCDHGB8P	HGNC	ENSG00000248449				44	0	0	9	5	35.7143
PCDHGB8P	0	genome.wustl.edu	37	5	140807358	140807358	+	RNA	SNP	G	G	A			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	5	140807358	140807358	G	A	SNP	PCDHGB8P	ENST00000502926	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.992	-	-	-	no_errors	PCDHGB8P	HGNC	ENSG00000248449				45	0	0	13	2	13.3333
TRIO	0	genome.wustl.edu	37	5	14504649	14504649	+	Silent	SNP	C	C	T			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	5	14504649	14504649	C	T	SNP	TRIO	ENST00000344204	human	ensembl	74_37	+1	known	silent	c.8559	p.V2853	0.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_DH-domain,pfam_Prot_kinase_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,superfamily_Capsid/spike_ssDNA_virus,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	TRIO	HGNC	ENSG00000038382				514	0	0	172	109	38.79
KIAA1191	0	genome.wustl.edu	37	5	175786552	175786552	+	RNA	SNP	C	C	T			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	5	175786552	175786552	C	T	SNP	KIAA1191	ENST00000506613	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.064	-	-	-	no_errors	KIAA1191	HGNC	ENSG00000122203				102	0	0	12	7	36.8421
IL7R	0	genome.wustl.edu	37	5	35876425	35876425	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	5	35876425	35876425	T	G	SNP	IL7R	ENST00000303115	human	ensembl	74_37	+1	known	missense	c.1217	p.L406R	0.002	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3	-	no_errors	IL7R	HGNC	ENSG00000168685				111	0	0	149	13	8.02469
IRX1	0	genome.wustl.edu	37	5	3599410	3599410	+	Silent	SNP	T	T	G			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	5	3599410	3599410	T	G	SNP	IRX1	ENST00000302006	human	ensembl	74_37	+1	known	silent	c.348	p.A116	1.000	superfamily_Homeodomain-like	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,smart_Iroquois_homeo,pfscan_Homeobox_dom	-	no_errors	IRX1	HGNC	ENSG00000170549				110	0	0	42	17	28.8136
GDNF	0	genome.wustl.edu	37	5	37834914	37834914	+	Silent	SNP	G	G	A			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	5	37834914	37834914	G	A	SNP	GDNF	ENST00000427982	human	ensembl	74_37	-1	putative	silent	c.36	p.A12	1.000	NULL	pfam_TGF-b_C,smart_TGF-b_C,pirsf_GDNF	-	no_errors	GDNF	HGNC	ENSG00000168621				87	0	0	97	8	7.61905
HCN1	0	genome.wustl.edu	37	5	45645353	45645353	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	5	45645353	45645353	T	G	SNP	HCN1	ENST00000303230	human	ensembl	74_37	-1	known	missense	c.783	p.K261N	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_N,pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG	-	no_errors	HCN1	HGNC	ENSG00000164588				69	0	0	27	17	38.6364
ADAMTS16	0	genome.wustl.edu	37	5	5239336	5239336	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	5	5239336	5239336	T	C	SNP	ADAMTS16	ENST00000274181	human	ensembl	74_37	+1	known	missense	c.2227	p.S743P	1.000	prints_Peptidase_M12B_ADAM-TS	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS16	HGNC	ENSG00000145536				286	0	0	83	119	58.9109
ASCC3	0	genome.wustl.edu	37	6	100960674	100960674	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	6	100960674	100960674	G	A	SNP	ASCC3	ENST00000369162	human	ensembl	74_37	-1	known	nonsense	c.6196	p.R2066*	1.000	pfam_Sec63-dom,smart_Sec63-dom	pfam_Sec63-dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_AAA+_ATPase,smart_Helicase_C,smart_Sec63-dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ASCC3	HGNC	ENSG00000112249				163	0	0	85	15	15
FIG4	0	genome.wustl.edu	37	6	110064385	110064385	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	6	110064385	110064385	A	C	SNP	FIG4	ENST00000230124	human	ensembl	74_37	+1	known	missense	c.949	p.S317R	1.000	pfam_Syja_N,pfscan_Syja_N	pfam_Syja_N,pfscan_Syja_N	-	no_errors	FIG4	HGNC	ENSG00000112367				161	0	0	101	32	24.0602
UTRN	0	genome.wustl.edu	37	6	144780063	144780063	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	6	144780063	144780063	C	G	SNP	UTRN	ENST00000367545	human	ensembl	74_37	+1	known	missense	c.2442	p.I814M	0.003	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_dom,superfamily_CH-domain,superfamily_WW_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_dom,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_dom,pfscan_Znf_ZZ	-	no_errors	UTRN	HGNC	ENSG00000152818				109	0	0	14	17	54.8387
SYNE1	0	genome.wustl.edu	37	6	152671358	152671358	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	6	152671358	152671358	T	A	SNP	SYNE1	ENST00000265368	human	ensembl	74_37	-1	known	missense	c.11846	p.D3949V	1.000	superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018				163	0	0	46	32	41.0256
FNDC1	0	genome.wustl.edu	37	6	159660666	159660666	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	6	159660666	159660666	C	T	SNP	FNDC1	ENST00000297267	human	ensembl	74_37	+1	known	missense	c.4298	p.P1433L	0.019	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	FNDC1	HGNC	ENSG00000164694				9	0	0	1	2	66.6667
PDE10A	0	genome.wustl.edu	37	6	165756904	165756904	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	6	165756904	165756904	A	C	SNP	PDE10A	ENST00000539869	human	ensembl	74_37	-1	known	missense	c.2073	p.D691E	1.000	pfam_PDEase_catalytic_dom,prints_PDEase	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE10A	HGNC	ENSG00000112541				130	0	0	97	6	5.82524
ABCF1	0	genome.wustl.edu	37	6	30550930	30550930	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	6	30550930	30550930	C	T	SNP	ABCF1	ENST00000326195	human	ensembl	74_37	+1	known	missense	c.880	p.R294C	1.000	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCF1	HGNC	ENSG00000204574				202	0	0	65	25	27.7778
MCCD1	0	genome.wustl.edu	37	6	31496954	31496954	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	6	31496954	31496954	C	T	SNP	MCCD1	ENST00000376191	human	ensembl	74_37	+1	known	missense	c.163	p.P55S	0.001	NULL	NULL	-	no_errors	MCCD1	HGNC	ENSG00000204511				121	0	0	52	8	13.3333
TNXB	0	genome.wustl.edu	37	6	32020588	32020588	+	Silent	SNP	G	G	T			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	6	32020588	32020588	G	T	SNP	TNXB	ENST00000375247	human	ensembl	74_37	-1	known	silent	c.8968	p.R2990	0.985	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNXB	HGNC	ENSG00000168477				84	0	0	45	11	19.6429
FAM83B	0	genome.wustl.edu	37	6	54806564	54806564	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	6	54806564	54806564	G	A	SNP	FAM83B	ENST00000306858	human	ensembl	74_37	+1	known	missense	c.2795	p.R932H	0.966	NULL	pfam_DUF1669	-	no_errors	FAM83B	HGNC	ENSG00000168143				141	0	0	56	17	23.2877
F13A1	0	genome.wustl.edu	37	6	6145969	6145969	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	6	6145969	6145969	T	G	SNP	F13A1	ENST00000264870	human	ensembl	74_37	-1	known	missense	c.2082	p.E694D	0.725	pfam_Transglutaminase_C,superfamily_Transglutaminase_C	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	F13A1	HGNC	ENSG00000124491				165	0	0	97	18	15.6522
BAI3	0	genome.wustl.edu	37	6	70071081	70071081	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	6	70071081	70071081	A	C	SNP	BAI3	ENST00000370598	human	ensembl	74_37	+1	known	missense	c.3916	p.S1306R	1.000	NULL	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_Thrombospondin_1_rpt,pfam_GPS_dom,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_CUB_dom,pfscan_GPS_dom,pfscan_Thrombospondin_1_rpt,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_brain-spec_angio_inhib,prints_GPCR_2_secretin-like	-	no_errors	BAI3	HGNC	ENSG00000135298				95	0	0	36	12	25
LMBRD1	0	genome.wustl.edu	37	6	70423647	70423647	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	6	70423647	70423647	A	C	SNP	LMBRD1	ENST00000370577	human	ensembl	74_37	-1	known	missense	c.805	p.L269V	0.999	NULL	pfam_LMBR1-like_membr_prot	-	no_errors	LMBRD1	HGNC	ENSG00000168216				124	0	0	46	8	14.8148
FILIP1	0	genome.wustl.edu	37	6	76063321	76063321	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	6	76063321	76063321	T	A	SNP	FILIP1	ENST00000237172	human	ensembl	74_37	-1	known	missense	c.563	p.H188L	1.000	pfam_Cortactin-binding_p2_N	pfam_Cortactin-binding_p2_N,prints_Tropomyosin	-	no_errors	FILIP1	HGNC	ENSG00000118407				298	0	0	129	31	19.375
PHIP	0	genome.wustl.edu	37	6	79664656	79664656	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	6	79664656	79664656	G	A	SNP	PHIP	ENST00000275034	human	ensembl	74_37	-1	known	missense	c.3928	p.R1310C	1.000	superfamily_Bromodomain	pfam_WD40_repeat,pfam_Bromodomain,superfamily_Quinonprotein_ADH-like_supfam,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Bromodomain	-	no_errors	PHIP	HGNC	ENSG00000146247				66	0	0	21	10	32.2581
RELN	0	genome.wustl.edu	37	7	103322678	103322678	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	7	103322678	103322678	A	G	SNP	RELN	ENST00000424685	human	ensembl	74_37	-1	known	missense	c.1174	p.Y392H	1.000	NULL	pfam_EGF_extracell,pfam_Reeler_dom,pfam_BNR_rpt,superfamily_Sialidases,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Reeler_dom	-	no_errors	RELN	HGNC	ENSG00000189056				180	0	0	71	30	29.703
CPED1	0	genome.wustl.edu	37	7	120770266	120770266	+	Silent	SNP	C	C	T			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	7	120770266	120770266	C	T	SNP	CPED1	ENST00000310396	human	ensembl	74_37	+1	known	silent	c.1495	p.L499	0.730	NULL	NULL	-	no_errors	CPED1	HGNC	ENSG00000106034				129	0	0	82	21	20.3883
CPED1	0	genome.wustl.edu	37	7	120781020	120781020	+	Silent	SNP	T	T	C			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	7	120781020	120781020	T	C	SNP	CPED1	ENST00000310396	human	ensembl	74_37	+1	known	silent	c.1839	p.T613	0.991	NULL	NULL	-	no_errors	CPED1	HGNC	ENSG00000106034				64	0	0	33	8	19.5122
CPED1	0	genome.wustl.edu	37	7	120876819	120876819	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	7	120876819	120876819	T	C	SNP	CPED1	ENST00000310396	human	ensembl	74_37	+1	known	missense	c.2107	p.S703P	0.998	NULL	NULL	-	no_errors	CPED1	HGNC	ENSG00000106034				123	0	0	61	17	21.7949
DGKB	0	genome.wustl.edu	37	7	14724974	14724974	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	7	14724974	14724974	T	G	SNP	DGKB	ENST00000258767	human	ensembl	74_37	-1	known	missense	c.725	p.D242A	1.000	NULL	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_EF_hand_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,pfscan_EF_hand_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	DGKB	HGNC	ENSG00000136267				112	0	0	100	11	9.90991
ABCF2	0	genome.wustl.edu	37	7	150920882	150920882	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	7	150920882	150920882	C	T	SNP	ABCF2	ENST00000222388	human	ensembl	74_37	-1	known	missense	c.604	p.D202N	0.999	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCF2	HGNC	ENSG00000033050				42	0	0	7	4	36.3636
UBE3C	0	genome.wustl.edu	37	7	157000610	157000610	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	7	157000610	157000610	G	A	SNP	UBE3C	ENST00000348165	human	ensembl	74_37	+1	known	missense	c.1790	p.R597K	0.997	NULL	pfam_HECT,superfamily_HECT,superfamily_DHFR-like_dom,smart_IQ_motif_EF-hand-BS,smart_HECT,pfscan_HECT,pfscan_IQ_motif_EF-hand-BS	-	no_errors	UBE3C	HGNC	ENSG00000009335				56	0	0	33	5	13.1579
HDAC9	0	genome.wustl.edu	37	7	19035699	19035699	+	RNA	SNP	C	C	T			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	7	19035699	19035699	C	T	SNP	HDAC9	ENST00000496026	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.999	-	-	-	no_errors	HDAC9	HGNC	ENSG00000048052				17	0	0	19	4	17.3913
STK31	0	genome.wustl.edu	37	7	23871800	23871800	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	7	23871800	23871800	A	C	SNP	STK31	ENST00000355870	human	ensembl	74_37	+1	known	missense	c.2875	p.S959R	0.598	superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	pfam_Tudor,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Tudor,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Tudor,pfscan_Prot_kinase_dom	-	no_errors	STK31	HGNC	ENSG00000196335				100	0	0	63	10	13.6986
BRAT1	0	genome.wustl.edu	37	7	2578824	2578824	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	7	2578824	2578824	C	T	SNP	BRAT1	ENST00000340611	human	ensembl	74_37	-1	known	missense	c.1759	p.E587K	0.000	superfamily_ARM-type_fold	pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	BRAT1	HGNC	ENSG00000106009				73	0	0	67	19	22.093
NFE2L3	0	genome.wustl.edu	37	7	26224983	26224983	+	Silent	SNP	C	C	T			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	7	26224983	26224983	C	T	SNP	NFE2L3	ENST00000056233	human	ensembl	74_37	+1	known	silent	c.1665	p.V555	0.992	pfam_bZIP_Maf,superfamily_TF_DNA-bd	pfam_bZIP,pfam_bZIP_Maf,superfamily_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	NFE2L3	HGNC	ENSG00000050344				96	0	0	82	5	5.74713
SNORA5C	0	genome.wustl.edu	37	7	45144523	45144523	+	RNA	SNP	T	T	G			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	7	45144523	45144523	T	G	SNP	SNORA5C	ENST00000364902	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.881	-	-	-	no_errors	SNORA5C	HGNC	ENSG00000201772				132	0	0	56	23	29.1139
ABCA13	0	genome.wustl.edu	37	7	48559811	48559811	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	7	48559811	48559811	T	A	SNP	ABCA13	ENST00000435803	human	ensembl	74_37	+1	known	missense	c.13972	p.F4658I	0.994	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA13	HGNC	ENSG00000179869				61	0	0	48	8	14.2857
INTS4L2	0	genome.wustl.edu	37	7	65157822	65157822	+	RNA	SNP	G	G	A			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	7	65157822	65157822	G	A	SNP	INTS4L2	ENST00000430126	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	INTS4L2	HGNC	ENSG00000232270				116	0	0	51	18	26.087
STX1A	0	genome.wustl.edu	37	7	73122931	73122931	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	7	73122931	73122931	T	G	SNP	STX1A	ENST00000222812	human	ensembl	74_37	-1	known	missense	c.196	p.N66H	1.000	pfam_Syntaxin_N,superfamily_t-SNARE,smart_Syntaxin_N	pfam_Syntaxin_N,pfam_T_SNARE_dom,superfamily_t-SNARE,smart_Syntaxin_N,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	STX1A	HGNC	ENSG00000106089				46	0	0	43	8	15.6863
PCLO	0	genome.wustl.edu	37	7	82544655	82544655	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	7	82544655	82544655	T	G	SNP	PCLO	ENST00000333891	human	ensembl	74_37	-1	known	missense	c.12647	p.Y4216S	1.000	NULL	pfam_Znf_piccolo,pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472				63	0	0	22	3	12
PCLO	0	genome.wustl.edu	37	7	82544697	82544697	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	7	82544697	82544697	T	A	SNP	PCLO	ENST00000333891	human	ensembl	74_37	-1	known	missense	c.12605	p.K4202I	1.000	NULL	pfam_Znf_piccolo,pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472				70	0	0	25	4	13.7931
PCLO	0	genome.wustl.edu	37	7	82581838	82581838	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	7	82581838	82581838	C	T	SNP	PCLO	ENST00000333891	human	ensembl	74_37	-1	known	missense	c.8431	p.E2811K	1.000	NULL	pfam_Znf_piccolo,pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472				88	0	0	56	13	18.8406
PCLO	0	genome.wustl.edu	37	7	82583158	82583158	+	Nonsense_Mutation	SNP	T	T	A			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	7	82583158	82583158	T	A	SNP	PCLO	ENST00000333891	human	ensembl	74_37	-1	known	nonsense	c.7111	p.K2371*	0.007	NULL	pfam_Znf_piccolo,pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472				40	0	0	14	3	17.6471
SAMD9	0	genome.wustl.edu	37	7	92733880	92733880	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	7	92733880	92733880	T	G	SNP	SAMD9	ENST00000379958	human	ensembl	74_37	-1	known	missense	c.1531	p.S511R	0.024	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,superfamily_P-loop_NTPase,smart_SAM,pfscan_SAM	-	no_errors	SAMD9	HGNC	ENSG00000205413				215	0	0	100	17	14.5299
SGCE	0	genome.wustl.edu	37	7	94257572	94257572	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	7	94257572	94257572	T	C	SNP	SGCE	ENST00000445866	human	ensembl	74_37	-1	known	missense	c.332	p.D111G	1.000	pfam_Sarcoglycan_2,superfamily_Cadherin-like,smart_Cadg	pfam_Sarcoglycan_2,superfamily_Cadherin-like,smart_Cadg	-	no_errors	SGCE	HGNC	ENSG00000127990				39	0	0	25	9	26.4706
DYNC1I1	0	genome.wustl.edu	37	7	95709704	95709704	+	Silent	SNP	G	G	A			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	7	95709704	95709704	G	A	SNP	DYNC1I1	ENST00000324972	human	ensembl	74_37	+1	known	silent	c.1731	p.G577	0.206	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_Dynein_IC_1/2,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DYNC1I1	HGNC	ENSG00000158560				170	1	0.584795	88	28	24.1379
DCSTAMP	0	genome.wustl.edu	37	8	105361682	105361682	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	8	105361682	105361682	T	G	SNP	DCSTAMP	ENST00000297581	human	ensembl	74_37	+1	known	missense	c.902	p.L301R	0.057	pfam_DC_STAMP-like,superfamily_ABC1_TM_dom	pfam_DC_STAMP-like,superfamily_ABC1_TM_dom	-	no_errors	DCSTAMP	HGNC	ENSG00000164935				348	0	0	162	47	22.488
KCNV1	0	genome.wustl.edu	37	8	110986309	110986309	+	Silent	SNP	G	G	A			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	8	110986309	110986309	G	A	SNP	KCNV1	ENST00000297404	human	ensembl	74_37	-1	known	silent	c.309	p.F103	0.999	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv4	pfam_T1-type_BTB,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv8,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv4	-	no_errors	KCNV1	HGNC	ENSG00000164794				42	0	0	13	6	31.5789
KCNQ3	0	genome.wustl.edu	37	8	133187703	133187703	+	Silent	SNP	G	G	A			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	8	133187703	133187703	G	A	SNP	KCNQ3	ENST00000388996	human	ensembl	74_37	-1	known	silent	c.930	p.G310	0.368	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ankyrin-G_BS,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl_volt-dep_KCNQ3,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ3	HGNC	ENSG00000184156				180	0	0	94	19	16.8142
CYHR1	0	genome.wustl.edu	37	8	145689777	145689777	+	Silent	SNP	G	G	C			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	8	145689777	145689777	G	C	SNP	CYHR1	ENST00000306145	human	ensembl	74_37	-1	known	silent	c.312	p.G104	0.858	NULL	NULL	-	no_errors	CYHR1	HGNC	ENSG00000187954				170	0	0	75	23	23.4694
ARHGAP39	0	genome.wustl.edu	37	8	145772550	145772550	+	Silent	SNP	G	G	A			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	8	145772550	145772550	G	A	SNP	ARHGAP39	ENST00000377307	human	ensembl	74_37	-1	known	silent	c.1920	p.T640	1.000	NULL	pfam_RhoGAP_dom,pfam_MyTH4_dom,superfamily_Rho_GTPase_activation_prot,superfamily_WW_dom,smart_WW_dom,smart_MyTH4_dom,smart_RhoGAP_dom,pfscan_MyTH4_dom,pfscan_WW_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP39	HGNC	ENSG00000147799				42	0	0	17	10	37.037
PPP3CC	0	genome.wustl.edu	37	8	22380190	22380190	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	8	22380190	22380190	C	A	SNP	PPP3CC	ENST00000240139	human	ensembl	74_37	+1	known	missense	c.871	p.Q291K	1.000	smart_Ser/Thr-sp_prot-phosphatase	pfam_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase,prints_Ser/Thr-sp_prot-phosphatase	-	no_errors	PPP3CC	HGNC	ENSG00000120910				136	0	0	52	4	7.14286
UNC5D	0	genome.wustl.edu	37	8	35541239	35541239	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	8	35541239	35541239	G	A	SNP	UNC5D	ENST00000404895	human	ensembl	74_37	+1	known	missense	c.745	p.V249I	1.000	superfamily_Thrombospondin_1_rpt,smart_Ig_sub	pfam_ZU5,pfam_Ig_I-set,pfam_Thrombospondin_1_rpt,pfam_Death_domain,pfam_Immunoglobulin,superfamily_DEATH-like_dom,superfamily_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,smart_Thrombospondin_1_rpt,smart_ZU5,smart_Death_domain,pfscan_Thrombospondin_1_rpt,pfscan_ZU5,pfscan_Ig-like_dom	-	no_errors	UNC5D	HGNC	ENSG00000156687				78	0	0	18	5	21.7391
IDO2	0	genome.wustl.edu	37	8	39871157	39871157	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	8	39871157	39871157	G	A	SNP	IDO2	ENST00000502986	human	ensembl	74_37	+1	known	missense	c.832	p.G278S	0.997	pfam_Indolamine_dOase	pfam_Indolamine_dOase	-	no_errors	IDO2	HGNC	ENSG00000188676				120	1	0.826446	32	13	28.8889
KAT6A	0	genome.wustl.edu	37	8	41906165	41906165	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	8	41906165	41906165	C	A	SNP	KAT6A	ENST00000265713	human	ensembl	74_37	-1	known	missense	c.331	p.A111S	0.993	smart_Histone_H1/H5_H15	pfam_MOZ_SAS,pfam_Znf_PHD-finger,superfamily_Acyl_CoA_acyltransferase,superfamily_Znf_FYVE_PHD,smart_Histone_H1/H5_H15,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	KAT6A	HGNC	ENSG00000083168				173	0	0	120	16	11.7647
PXDNL	0	genome.wustl.edu	37	8	52384785	52384785	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	8	52384785	52384785	T	G	SNP	PXDNL	ENST00000356297	human	ensembl	74_37	-1	known	missense	c.774	p.E258D	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like_dom	-	no_errors	PXDNL	HGNC	ENSG00000147485				152	0	0	29	89	75.4237
TTPA	0	genome.wustl.edu	37	8	63976767	63976767	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	8	63976767	63976767	G	A	SNP	TTPA	ENST00000260116	human	ensembl	74_37	-1	known	missense	c.661	p.R221W	0.997	pfam_CRAL-TRIO_dom,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,prints_CRAL-bd_toc_tran	pfam_CRAL-TRIO_dom,pfam_CRAL/TRIO_N_dom,superfamily_CRAL-TRIO_dom,superfamily_CRAL/TRIO_N_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,prints_CRAL-bd_toc_tran	-	no_errors	TTPA	HGNC	ENSG00000137561				32	0	0	19	5	20.8333
LOC100132891	0	genome.wustl.edu	37	8	72756484	72756484	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	8	72756484	72756484	G	A	SNP	LOC100132891	ENST00000522519	human	ensembl	74_37	+1	known	missense	c.253	p.A85T	0.002	NULL	NULL	-	no_errors	RP11-383H13.1	Clone_based_vega_gene	ENSG00000235531				21	0	0	14	10	41.6667
POP1	0	genome.wustl.edu	37	8	99170065	99170065	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	8	99170065	99170065	G	A	SNP	POP1	ENST00000349693	human	ensembl	74_37	+1	known	missense	c.2641	p.E881K	0.999	NULL	pfam_RNase_P/MRP_POP1,pfam_POPLD	-	no_errors	POP1	HGNC	ENSG00000104356				147	0	0	17	51	75
GARNL3	0	genome.wustl.edu	37	9	130147318	130147318	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	9	130147318	130147318	C	T	SNP	GARNL3	ENST00000373387	human	ensembl	74_37	+1	known	missense	c.2282	p.P761L	1.000	pfam_Citron,smart_Citron	pfam_Citron,pfam_Rap_GAP_dom,smart_Citron,pfscan_Rap_GAP_dom	-	no_errors	GARNL3	HGNC	ENSG00000136895				199	0	0	134	27	16.7702
ST6GALNAC6	0	genome.wustl.edu	37	9	130660220	130660220	+	RNA	SNP	G	G	A			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	9	130660220	130660220	G	A	SNP	ST6GALNAC6	ENST00000478319	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.608	-	-	-	no_errors	ST6GALNAC6	HGNC	ENSG00000160408				49	0	0	22	6	21.4286
FUBP3	0	genome.wustl.edu	37	9	133498194	133498194	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	9	133498194	133498194	C	T	SNP	FUBP3	ENST00000319725	human	ensembl	74_37	+1	known	missense	c.871	p.P291S	1.000	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	pfam_KH_dom_type_1,pfam_KH_dom_type_2,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	FUBP3	HGNC	ENSG00000107164				165	0	0	60	21	25.9259
NPR2	0	genome.wustl.edu	37	9	35800105	35800105	+	Silent	SNP	G	G	A			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	9	35800105	35800105	G	A	SNP	NPR2	ENST00000342694	human	ensembl	74_37	+1	known	silent	c.1074	p.R358	0.992	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_A/G_cyclase,pfam_ANF_lig-bd_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Peripla_BP_I,superfamily_A/G_cyclase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_A/G_cyclase,prints_Ntpep_rcpt,pfscan_Prot_kinase_dom,pfscan_A/G_cyclase	-	no_errors	NPR2	HGNC	ENSG00000159899				311	0	0	61	38	38.3838
FLJ20444	0	genome.wustl.edu	37	9	66513726	66513726	+	RNA	SNP	C	C	T			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	9	66513726	66513726	C	T	SNP	FLJ20444	ENST00000586625	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-262H14.3	Clone_based_vega_gene	ENSG00000234665				19	0	0	3	2	40
TRPM6	0	genome.wustl.edu	37	9	77403574	77403574	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	9	77403574	77403574	C	A	SNP	TRPM6	ENST00000451710	human	ensembl	74_37	-1	known	missense	c.2623	p.V875F	1.000	NULL	pfam_MHCK_EF2_kinase,pfam_Ion_trans_dom,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	TRPM6	HGNC	ENSG00000119121				214	0	0	96	14	12.7273
ERCC6L2	0	genome.wustl.edu	37	9	98685633	98685633	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	9	98685633	98685633	C	G	SNP	ERCC6L2	ENST00000437817	human	ensembl	74_37	+1	known	missense	c.971	p.S324C	1.000	pfam_HDA_complex_subunit-2/3,superfamily_P-loop_NTPase	pfam_SNF2_N,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ERCC6L2	HGNC	ENSG00000182150				153	0	0	54	31	36.4706
MT-ATP6	0	genome.wustl.edu	37	MT	9182	9182	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	MT	9182	9182	G	C	SNP	MT-ATP6	ENST00000361899	human	ensembl	74_37	+1	known	missense	c.656	p.S219T	NULL	pfam_ATPase_F0-cplx_asu,superfamily_ATPase_F0-cplx_asu,prints_ATPase_F0-cplx_asu,tigrfam_ATPase_F0-cplx_asu	pfam_ATPase_F0-cplx_asu,superfamily_ATPase_F0-cplx_asu,prints_ATPase_F0-cplx_asu,tigrfam_ATPase_F0-cplx_asu	-	no_errors	MT-ATP6	HGNC	ENSG00000198899				12	0	0	8	29	78.3784
CHRDL1	0	genome.wustl.edu	37	X	109924715	109924715	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	X	109924715	109924715	C	T	SNP	CHRDL1	ENST00000372042	human	ensembl	74_37	-1	known	missense	c.1151	p.R384Q	0.997	NULL	pfam_VWF_C,smart_VWF_C,pfscan_VWF_C	-	no_errors	CHRDL1	HGNC	ENSG00000101938				103	0	0	19	29	60.4167
ZCCHC16	0	genome.wustl.edu	37	X	111698082	111698082	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	X	111698082	111698082	A	C	SNP	ZCCHC16	ENST00000340433	human	ensembl	74_37	+1	known	missense	c.126	p.Q42H	0.001	NULL	superfamily_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC16	HGNC	ENSG00000187823				80	0	0	6	13	68.4211
VGLL1	0	genome.wustl.edu	37	X	135638646	135638646	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	X	135638646	135638646	T	G	SNP	VGLL1	ENST00000370634	human	ensembl	74_37	+1	known	missense	c.725	p.L242R	0.002	NULL	pfam_Vg_Tdu,smart_TDU_repeat	-	no_errors	VGLL1	HGNC	ENSG00000102243				102	0	0	12	23	65.7143
UBE2NL	0	genome.wustl.edu	37	X	142967519	142967519	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	X	142967519	142967519	T	C	SNP	UBE2NL	ENST00000370494	human	ensembl	74_37	+1	known	missense	c.317	p.L106P	1.000	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	-	no_errors	UBE2NL	HGNC	ENSG00000102069				120	0	0	20	27	57.4468
CSAG4	0	genome.wustl.edu	37	X	151896589	151896589	+	RNA	SNP	C	C	A			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	X	151896589	151896589	C	A	SNP	CSAG4	ENST00000361201	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CSAG4	HGNC	ENSG00000242599				173	1	0.574713	66	11	14.2857
RPS6KA3	0	genome.wustl.edu	37	X	20173605	20173605	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	X	20173605	20173605	G	A	SNP	RPS6KA3	ENST00000379565	human	ensembl	74_37	-1	known	missense	c.2134	p.R712C	1.000	superfamily_Kinase-like_dom,pirsf_Ribosomal_S6_kinase_II	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	RPS6KA3	HGNC	ENSG00000177189				85	0	0	43	20	31.746
ZNF645	0	genome.wustl.edu	37	X	22292314	22292314	+	Silent	SNP	G	G	A			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	X	22292314	22292314	G	A	SNP	ZNF645	ENST00000323684	human	ensembl	74_37	+1	known	silent	c.1206	p.T402	0.002	NULL	pfscan_Znf_RING,pfscan_Znf_C2H2	-	no_errors	ZNF645	HGNC	ENSG00000175809				102	0	0	48	29	37.6623
FAM47C	0	genome.wustl.edu	37	X	37028374	37028374	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	X	37028374	37028374	C	T	SNP	FAM47C	ENST00000358047	human	ensembl	74_37	+1	known	missense	c.1891	p.R631C	0.000	NULL	NULL	-	no_errors	FAM47C	HGNC	ENSG00000198173				121	1	0.819672	46	21	31.3433
RBM10	0	genome.wustl.edu	37	X	47030564	47030564	+	Silent	SNP	G	G	A			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	X	47030564	47030564	G	A	SNP	RBM10	ENST00000377604	human	ensembl	74_37	+1	known	silent	c.339	p.E113	1.000	NULL	pfam_G_patch_dom,pfam_RRM_dom,pfam_Znf_RanBP2,smart_RRM_dom,smart_Znf_RanBP2,smart_G_patch_dom,pfscan_Znf_RanBP2,pfscan_Znf_C2H2,pfscan_G_patch_dom,pfscan_RRM_dom	-	no_errors	RBM10	HGNC	ENSG00000182872				37	0	0	19	6	24
WNK3	0	genome.wustl.edu	37	X	54228489	54228489	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	X	54228489	54228489	T	G	SNP	WNK3	ENST00000354646	human	ensembl	74_37	-1	known	missense	c.5008	p.S1670R	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	WNK3	HGNC	ENSG00000196632				35	0	0	21	8	27.5862
MAGEE1	0	genome.wustl.edu	37	X	75648562	75648562	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	X	75648562	75648562	T	G	SNP	MAGEE1	ENST00000361470	human	ensembl	74_37	+1	known	missense	c.239	p.V80G	0.341	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEE1	HGNC	ENSG00000198934				11	0	0	3	2	40
FADS3	0	genome.wustl.edu	37	11	61644395	61644397	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	11	61644395	61644397	AAG	-	DEL	FADS3	ENST00000278829	human	ensembl	74_37	-1	known	in_frame_del	c.926_924	p.F308in_frame_del	0.519:0.514:0.829	pfam_Fatty_acid_desaturase-1,pirsf_Fatty_acid/sphinglp_desaturase	pfam_Fatty_acid_desaturase-1,pfam_Cyt_B5-like_heme/steroid-bd,superfamily_Cyt_B5-like_heme/steroid-bd,pirsf_Fatty_acid/sphinglp_desaturase,pfscan_Cyt_B5-like_heme/steroid-bd	-	no_errors	FADS3	HGNC	ENSG00000221968				42	0	0	15	3	16.6667
ARID3B	0	genome.wustl.edu	37	15	74888025	74888027	+	In_Frame_Del	DEL	CAG	CAG	-			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	CAG	CAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	15	74888025	74888027	CAG	-	DEL	ARID3B	ENST00000346246	human	ensembl	74_37	+1	known	in_frame_del	c.1593_1595	p.S535in_frame_del	0.996:0.998:1.000	NULL	pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID3B	HGNC	ENSG00000179361				117	1	0.847458	55	5	8.33333
ITGB4	0	genome.wustl.edu	37	17	73747111	73747112	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	17	73747111	73747112	-	T	INS	ITGB4	ENST00000200181	human	ensembl	74_37	+1	known	frame_shift_ins	c.3712_3713	p.S1239fs	1.000:1.000	pirsf_Integrin_bsu-4,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pirsf_Integrin_bsu-4,pfam_Integrin_bsu_N,pfam_Fibronectin_type3,pfam_Calx_beta,pfam_Integrin_bsu_tail,pfam_EGF_extracell,superfamily_Fibronectin_type3,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like_fold,smart_Integrin_bsu_N,smart_Calx_beta,smart_Fibronectin_type3,prints_Integrin_bsu,pfscan_Fibronectin_type3	-	no_errors	ITGB4	HGNC	ENSG00000132470				212	0	0	73	24	24.7423
FHOD3	0	genome.wustl.edu	37	18	34298327	34298328	+	Frame_Shift_Ins	INS	-	-	CC			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	18	34298327	34298328	-	CC	INS	FHOD3	ENST00000257209	human	ensembl	74_37	+1	known	frame_shift_ins	c.2541_2542	p.P849fs	0.984:1.000	NULL	pfam_FH2_Formin,superfamily_ARM-type_fold,smart_FH2_Formin	-	no_errors	FHOD3	HGNC	ENSG00000134775				55	0	0	31	6	16.2162
ELP3	0	genome.wustl.edu	37	8	27967927	27967928	+	Frame_Shift_Ins	INS	-	-	CCTA			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	8	27967927	27967928	-	CCTA	INS	ELP3	ENST00000256398	human	ensembl	74_37	+1	known	frame_shift_ins	c.434_435	p.Q147fs	0.945:0.946	pfam_rSAM,smart_Elp3/MiaB/NifB,pirsf_Hist_AcTrfase_ELP3,tigrfam_Hist_AcTrfase_ELP3	pfam_rSAM,pfam_GNAT_dom,superfamily_Acyl_CoA_acyltransferase,smart_Elp3/MiaB/NifB,pirsf_Hist_AcTrfase_ELP3,pfscan_GNAT_dom,tigrfam_Hist_AcTrfase_ELP3	-	no_errors	ELP3	HGNC	ENSG00000134014				232	0	0	105	31	22.7941
PPP2R3B	0	genome.wustl.edu	37	X	301618	301624	+	Frame_Shift_Del	DEL	GAACATG	GAACATG	-			TCGA-BR-7197-01A-11D-2201-08	TCGA-BR-7197-10A-01D-2201-08	GAACATG	GAACATG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ce737023-df0f-4b98-a1bf-695c7ef3ea71	08979d3a-4c9d-4d8b-b6f4-aadd58ae0ccc	X	301618	301624	GAACATG	-	DEL	PPP2R3B	ENST00000390665	human	ensembl	74_37	-1	known	frame_shift_del	c.1233_1227	p.M410fs	0.999:1.000:1.000:1.000:1.000:1.000:1.000	pfscan_EF_hand_dom	pfscan_EF_hand_dom	-	no_errors	PPP2R3B	HGNC	ENSG00000167393				140	0	0	63	13	17.1053
