Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
ATXN7L2	0	genome.wustl.edu	37	1	110031590	110031590	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	110031590	110031590	G	A	SNP	ATXN7L2	ENST00000369870	human	ensembl	74_37	+1	known	missense	c.905	p.R302H	1.000	NULL	pfam_SCA7_dom	-	no_errors	ATXN7L2	HGNC	ENSG00000162650				24	0	0	35	4	10.2564
AHCYL1	0	genome.wustl.edu	37	1	110559020	110559020	+	Silent	SNP	T	T	C			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	110559020	110559020	T	C	SNP	AHCYL1	ENST00000369799	human	ensembl	74_37	+1	known	silent	c.837	p.N279	1.000	pfam_Adenosylhomocysteinase,pirsf_Adenosylhomocysteinase,tigrfam_Adenosylhomocysteinase	pfam_Adenosylhomocysteinase,pfam_Ado_hCys_hydrolase_NAD-bd,pfam_D-isomer_2_OHA_DH_NAD-bd,pfam_IlvN,pirsf_Adenosylhomocysteinase,tigrfam_Adenosylhomocysteinase	-	no_errors	AHCYL1	HGNC	ENSG00000168710				85	0	0	73	5	6.41026
WARS2	0	genome.wustl.edu	37	1	119575742	119575742	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	119575742	119575742	C	T	SNP	WARS2	ENST00000235521	human	ensembl	74_37	-1	known	missense	c.875	p.R292H	0.379	pfam_aa-tRNA-synth_Ic,tigrfam_Trp-tRNA-ligase	pfam_aa-tRNA-synth_Ic,prints_Trp-tRNA-ligase,tigrfam_Trp-tRNA-ligase	-	no_errors	WARS2	HGNC	ENSG00000116874				77	0	0	79	13	14.1304
HAO2	0	genome.wustl.edu	37	1	119925649	119925649	+	Silent	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	119925649	119925649	C	T	SNP	HAO2	ENST00000361035	human	ensembl	74_37	+1	known	silent	c.282	p.H94	0.184	pfam_FMN-dep_DH,pirsf_Alpha-hydoxy_acid_DH_FMN	pfam_FMN-dep_DH,pfam_IMP_DH_GMPRt,pfam_Glu_synth_centr_C,pirsf_Alpha-hydoxy_acid_DH_FMN	-	no_errors	HAO2	HGNC	ENSG00000116882				22	0	0	28	2	6.66667
SCNN1D	0	genome.wustl.edu	37	1	1222953	1222953	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	1222953	1222953	C	T	SNP	SCNN1D	ENST00000379116	human	ensembl	74_37	+1	known	missense	c.1376	p.A459V	0.002	pfam_Na+channel_ASC,tigrfam_EnaC	pfam_Na+channel_ASC,prints_Na+channel_ASC,tigrfam_EnaC	-	no_errors	SCNN1D	HGNC	ENSG00000162572				62	0	0	54	23	29.8701
AADACL3	0	genome.wustl.edu	37	1	12779678	12779678	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	12779678	12779678	G	A	SNP	AADACL3	ENST00000359318	human	ensembl	74_37	+1	known	missense	c.199	p.V67I	0.000	pfam_AB_hydrolase_3	pfam_AB_hydrolase_3	-	no_errors	AADACL3	HGNC	ENSG00000188984				77	0	0	50	4	7.40741
GPR89A	0	genome.wustl.edu	37	1	145769447	145769447	+	Silent	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	145769447	145769447	G	A	SNP	GPR89A	ENST00000313835	human	ensembl	74_37	-1	known	silent	c.1056	p.I352	0.922	pfam_ABA_GPCR_dom	pfam_ABA_GPCR_dom,pfam_Golgi_pH-regulator_cons_dom	-	no_errors	GPR89A	HGNC	ENSG00000117262				44	0	0	26	9	25.7143
VPS45	0	genome.wustl.edu	37	1	150053479	150053479	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	150053479	150053479	A	G	SNP	VPS45	ENST00000369130	human	ensembl	74_37	+1	known	missense	c.743	p.D248G	1.000	pfam_Sec1-like,superfamily_Sec1-like	pfam_Sec1-like,superfamily_Sec1-like	-	no_errors	VPS45	HGNC	ENSG00000136631				59	0	0	45	15	25
CELF3	0	genome.wustl.edu	37	1	151680108	151680108	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	151680108	151680108	G	A	SNP	CELF3	ENST00000290583	human	ensembl	74_37	-1	known	missense	c.647	p.A216V	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CELF3	HGNC	ENSG00000159409				19	0	0	7	7	50
FLG	0	genome.wustl.edu	37	1	152276316	152276316	+	Silent	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	152276316	152276316	G	A	SNP	FLG	ENST00000368799	human	ensembl	74_37	-1	known	silent	c.11046	p.H3682	0.000	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631				102	0	0	127	31	19.6203
NPR1	0	genome.wustl.edu	37	1	153658636	153658636	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	153658636	153658636	G	A	SNP	NPR1	ENST00000368680	human	ensembl	74_37	+1	known	missense	c.1718	p.R573H	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	pfam_A/G_cyclase,pfam_ANF_lig-bd_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Peripla_BP_I,superfamily_A/G_cyclase,superfamily_Kinase-like_dom,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_A/G_cyclase,prints_Ntpep_rcpt,pfscan_Prot_kinase_dom,pfscan_A/G_cyclase	-	no_errors	NPR1	HGNC	ENSG00000169418				57	0	0	44	11	20
ASH1L	0	genome.wustl.edu	37	1	155317682	155317682	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	155317682	155317682	C	T	SNP	ASH1L	ENST00000368346	human	ensembl	74_37	-1	known	missense	c.7583	p.R2528H	1.000	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain	pfam_SET_dom,pfam_BAH_dom,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_AT_hook_DNA-bd_motif,smart_AWS,smart_SET_dom,smart_Bromodomain,smart_Znf_PHD,smart_BAH_dom,pfscan_AWS,pfscan_BAH_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Bromodomain	-	no_errors	ASH1L	HGNC	ENSG00000116539				114	1	0.869565	70	34	32.6923
SEMA4A	0	genome.wustl.edu	37	1	156142686	156142686	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	156142686	156142686	G	C	SNP	SEMA4A	ENST00000355014	human	ensembl	74_37	+1	known	missense	c.1204	p.V402L	0.944	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,pfscan_Semap_dom	-	no_errors	SEMA4A	HGNC	ENSG00000196189				95	0	0	65	32	32.9897
RHBG	0	genome.wustl.edu	37	1	156339053	156339053	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	156339053	156339053	C	A	SNP	RHBG	ENST00000368246	human	ensembl	74_37	+1	known	missense	c.13	p.P5T	0.000	NULL	pfam_NH4_transpt_AmtB-like_dom,superfamily_NH4_transpt_AmtB-like_dom,prints_RhesusRHD	-	no_errors	RHBG	HGNC	ENSG00000132677				63	0	0	24	20	45.4545
HDGF	0	genome.wustl.edu	37	1	156713388	156713388	+	RNA	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	156713388	156713388	C	T	SNP	HDGF	ENST00000477306	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.001	-	-	-	no_errors	HDGF	HGNC	ENSG00000143321				41	0	0	14	6	30
SH2D2A	0	genome.wustl.edu	37	1	156779466	156779466	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	156779466	156779466	G	A	SNP	SH2D2A	ENST00000392306	human	ensembl	74_37	-1	known	missense	c.731	p.A244V	0.000	NULL	pfam_SH2,smart_SH2,pfscan_SH2	-	no_errors	SH2D2A	HGNC	ENSG00000027869				76	0	0	70	28	28.5714
NTRK1	0	genome.wustl.edu	37	1	156843535	156843535	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	156843535	156843535	G	A	SNP	NTRK1	ENST00000524377	human	ensembl	74_37	+1	known	missense	c.961	p.V321M	0.003	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Cys-rich_flank_reg_C,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_Tyr_kinase_neurotrophic_rcpt_1,prints_Tyr_kinase_NGF_rcpt	-	no_errors	NTRK1	HGNC	ENSG00000198400				20	0	0	12	3	20
SPTA1	0	genome.wustl.edu	37	1	158606546	158606546	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	158606546	158606546	T	G	SNP	SPTA1	ENST00000368147	human	ensembl	74_37	-1	known	missense	c.5195	p.K1732T	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_hand_dom,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554				119	0	0	67	36	34.9515
FCER1A	0	genome.wustl.edu	37	1	159275825	159275825	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	159275825	159275825	C	T	SNP	FCER1A	ENST00000368115	human	ensembl	74_37	+1	known	missense	c.379	p.P127S	0.000	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	FCER1A	HGNC	ENSG00000179639				60	0	0	49	16	24.6154
VANGL2	0	genome.wustl.edu	37	1	160393967	160393967	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	160393967	160393967	G	A	SNP	VANGL2	ENST00000368061	human	ensembl	74_37	+1	known	missense	c.1199	p.R400H	1.000	pfam_Strabismus,pirsf_Strabismus	pfam_Strabismus,pirsf_Strabismus	-	no_errors	VANGL2	HGNC	ENSG00000162738				86	0	0	58	20	25.641
FCGR2B	0	genome.wustl.edu	37	1	161642939	161642939	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	161642939	161642939	G	A	SNP	FCGR2B	ENST00000358671	human	ensembl	74_37	+1	known	missense	c.566	p.S189N	0.706	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	FCGR2B	HGNC	ENSG00000072694				47	0	0	44	5	10.2041
LMX1A	0	genome.wustl.edu	37	1	165182925	165182925	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	165182925	165182925	G	A	SNP	LMX1A	ENST00000294816	human	ensembl	74_37	-1	known	nonsense	c.622	p.R208*	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Znf_LIM,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeobox_dom,pfscan_Znf_LIM,pfscan_Homeobox_dom	-	no_errors	LMX1A	HGNC	ENSG00000162761				131	0	0	93	41	30.597
RXRG	0	genome.wustl.edu	37	1	165406376	165406376	+	RNA	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	165406376	165406376	G	A	SNP	RXRG	ENST00000465764	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RXRG	HGNC	ENSG00000143171				42	0	0	28	15	34.8837
MFAP2	0	genome.wustl.edu	37	1	17303033	17303033	+	Silent	SNP	T	T	C			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	17303033	17303033	T	C	SNP	MFAP2	ENST00000375535	human	ensembl	74_37	-1	known	silent	c.249	p.G83	0.356	pfam_MAGP	pfam_MAGP,pfam_ShK_toxin	-	no_errors	MFAP2	HGNC	ENSG00000117122				65	0	0	33	10	23.2558
SDHB	0	genome.wustl.edu	37	1	17345331	17345331	+	RNA	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	17345331	17345331	G	A	SNP	SDHB	ENST00000475049	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SDHB	HGNC	ENSG00000117118				93	0	0	52	3	5.45455
PADI3	0	genome.wustl.edu	37	1	17609510	17609510	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	17609510	17609510	T	C	SNP	PADI3	ENST00000375460	human	ensembl	74_37	+1	known	missense	c.1931	p.V644A	1.000	pfam_PAD_C,pirsf_Protein-arginine_deiminase_sub	pfam_PAD_C,pfam_Prot_Arg_deaminase_cen_dom,pfam_PAD_N,superfamily_Prot_Arg_deaminase_cen_dom,superfamily_Cupredoxin,pirsf_Protein-arginine_deiminase_sub	-	no_errors	PADI3	HGNC	ENSG00000142619				81	0	0	69	15	17.8571
PADI4	0	genome.wustl.edu	37	1	17657500	17657500	+	Silent	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	17657500	17657500	C	T	SNP	PADI4	ENST00000375448	human	ensembl	74_37	+1	known	silent	c.129	p.N43	0.000	pfam_PAD_N,superfamily_Cupredoxin,pirsf_Protein-arginine_deiminase_sub	pfam_PAD_C,pfam_Prot_Arg_deaminase_cen_dom,pfam_PAD_N,superfamily_Prot_Arg_deaminase_cen_dom,superfamily_Cupredoxin,pirsf_Protein-arginine_deiminase_sub	-	no_errors	PADI4	HGNC	ENSG00000159339				56	0	0	51	16	23.8806
SOAT1	0	genome.wustl.edu	37	1	179310351	179310351	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	179310351	179310351	T	C	SNP	SOAT1	ENST00000367619	human	ensembl	74_37	+1	known	missense	c.686	p.I229T	0.384	pfam_MBOAT_fam	pfam_MBOAT_fam	-	no_errors	SOAT1	HGNC	ENSG00000057252				205	0	0	149	8	5.09554
CEP350	0	genome.wustl.edu	37	1	180062648	180062648	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	180062648	180062648	C	T	SNP	CEP350	ENST00000367607	human	ensembl	74_37	+1	known	missense	c.7408	p.R2470C	1.000	superfamily_CAP-Gly_domain	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,pfscan_CAP-Gly_domain	-	no_errors	CEP350	HGNC	ENSG00000135837				21	0	0	9	6	40
GLUL	0	genome.wustl.edu	37	1	182354634	182354634	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	182354634	182354634	C	T	SNP	GLUL	ENST00000311223	human	ensembl	74_37	-1	known	missense	c.661	p.A221T	1.000	pfam_Gln_synth_cat_dom	pfam_Gln_synth_cat_dom,pfam_Gln_synt_beta,superfamily_Gln_synt_beta	-	no_errors	GLUL	HGNC	ENSG00000135821				89	0	0	60	19	24.0506
COLGALT2	0	genome.wustl.edu	37	1	183909828	183909828	+	Silent	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	183909828	183909828	G	A	SNP	COLGALT2	ENST00000361927	human	ensembl	74_37	-1	known	silent	c.1491	p.T497	0.822	pfam_Glyco_trans_25	pfam_Glyco_trans_25	-	no_errors	COLGALT2	HGNC	ENSG00000198756				133	0	0	74	29	28.1553
PLA2G4A	0	genome.wustl.edu	37	1	186957564	186957564	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	186957564	186957564	G	A	SNP	PLA2G4A	ENST00000367466	human	ensembl	74_37	+1	known	missense	c.2174	p.R725H	1.000	pfscan_LysoPLipase_cat_dom	pfam_LysoPLipase_cat_dom,pfam_C2_dom,superfamily_Acyl_Trfase/lysoPLipase,superfamily_C2_dom,smart_C2_dom,smart_LysoPLipase_cat_dom,pfscan_C2_dom,pfscan_LysoPLipase_cat_dom	-	no_errors	PLA2G4A	HGNC	ENSG00000116711				92	0	0	70	4	5.40541
MIR4695	0	genome.wustl.edu	37	1	19209766	19209766	+	RNA	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	19209766	19209766	C	T	SNP	MIR4695	ENST00000577305	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MIR4695	HGNC	ENSG00000265606				52	0	0	42	18	30
KIF21B	0	genome.wustl.edu	37	1	200974695	200974695	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	200974695	200974695	C	T	SNP	KIF21B	ENST00000422435	human	ensembl	74_37	-1	known	missense	c.575	p.R192H	1.000	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,pfam_WD40_repeat,superfamily_P-loop_NTPase,superfamily_WD40_repeat_dom,superfamily_Prefoldin,smart_Kinesin_motor_dom,smart_WD40_repeat,pfscan_Kinesin_motor_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Kinesin_motor_dom	-	no_errors	KIF21B	HGNC	ENSG00000116852				33	0	0	39	9	18.75
RPS10P7	0	genome.wustl.edu	37	1	201489468	201489468	+	RNA	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	201489468	201489468	G	A	SNP	RPS10P7	ENST00000441932	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RPS10P7	HGNC	ENSG00000223396				23	0	0	18	7	28
KDM5B	0	genome.wustl.edu	37	1	202710789	202710789	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	202710789	202710789	G	A	SNP	KDM5B	ENST00000367264	human	ensembl	74_37	-1	known	missense	c.2759	p.T920M	0.999	pfam_Lys_sp_deMease_like_dom	pfam_Lys_sp_deMease_like_dom,pfam_JmjC_dom,pfam_Znf_PHD-finger,pfam_ARID/BRIGHT_DNA-bd,pfam_Znf_C5HC2,pfam_TF_JmjN,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_Znf_PHD,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	KDM5B	HGNC	ENSG00000117139				60	0	0	47	15	24.1935
CDK18	0	genome.wustl.edu	37	1	205495220	205495220	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	205495220	205495220	C	T	SNP	CDK18	ENST00000506784	human	ensembl	74_37	+1	known	missense	c.574	p.R192C	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDK18	HGNC	ENSG00000117266				21	0	0	20	3	13.0435
SLC41A1	0	genome.wustl.edu	37	1	205768111	205768111	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	205768111	205768111	G	A	SNP	SLC41A1	ENST00000367137	human	ensembl	74_37	-1	known	missense	c.671	p.T224I	1.000	pfam_SLC41_membr_dom	pfam_SLC41_membr_dom	-	no_errors	SLC41A1	HGNC	ENSG00000133065				37	0	0	31	14	31.1111
ANGEL2	0	genome.wustl.edu	37	1	213180445	213180445	+	RNA	SNP	A	A	G			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	213180445	213180445	A	G	SNP	ANGEL2	ENST00000460337	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.009	-	-	-	no_errors	ANGEL2	HGNC	ENSG00000174606				25	0	0	30	3	9.09091
USH2A	0	genome.wustl.edu	37	1	216052348	216052348	+	Silent	SNP	A	A	C			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	216052348	216052348	A	C	SNP	USH2A	ENST00000366943	human	ensembl	74_37	-1	known	silent	c.8316	p.T2772	0.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781				144	0	0	133	56	29.6296
USH2A	0	genome.wustl.edu	37	1	216172363	216172363	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	216172363	216172363	G	A	SNP	USH2A	ENST00000366943	human	ensembl	74_37	-1	known	missense	c.6523	p.R2175C	0.943	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781				100	0	0	30	19	38.7755
TGFB2	0	genome.wustl.edu	37	1	218520238	218520238	+	Silent	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	218520238	218520238	G	A	SNP	TGFB2	ENST00000366929	human	ensembl	74_37	+1	known	silent	c.195	p.P65	1.000	pirsf_TGF-beta,pfam_TGF-b_N,prints_TGFb2,prints_TGF-beta	pirsf_TGF-beta,pfam_TGF-b_N,pfam_TGF-b_C,smart_TGF-b_C,prints_TGFb2,prints_TGF-beta	-	no_errors	TGFB2	HGNC	ENSG00000092969				58	0	0	43	25	36.7647
SIPA1L2	0	genome.wustl.edu	37	1	232568138	232568138	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	232568138	232568138	C	T	SNP	SIPA1L2	ENST00000262861	human	ensembl	74_37	-1	known	missense	c.4111	p.V1371M	1.000	NULL	pfam_DUF3401,pfam_Rap_GAP_dom,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP_dom	-	no_errors	SIPA1L2	HGNC	ENSG00000116991				59	0	0	55	11	16.6667
PCNXL2	0	genome.wustl.edu	37	1	233190017	233190017	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	233190017	233190017	G	A	SNP	PCNXL2	ENST00000258229	human	ensembl	74_37	-1	known	nonsense	c.4348	p.R1450*	1.000	NULL	pfam_Pecanex,superfamily_Trypsin-like_Pept_dom	-	no_errors	PCNXL2	HGNC	ENSG00000135749				21	0	0	15	6	28.5714
KCNK1	0	genome.wustl.edu	37	1	233802519	233802519	+	Silent	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	233802519	233802519	G	A	SNP	KCNK1	ENST00000366621	human	ensembl	74_37	+1	known	silent	c.534	p.V178	0.093	pirsf_2pore_dom_K_chnl_TASK	pfam_2pore_dom_K_chnl_dom,pirsf_2pore_dom_K_chnl_TASK,prints_2pore_dom_K_chnl_TWIK1,prints_2pore_dom_K_chnl_TWIK,prints_2pore_dom_K_chnl	-	no_errors	KCNK1	HGNC	ENSG00000135750				70	0	0	29	16	35.5556
ACTN2	0	genome.wustl.edu	37	1	236924372	236924372	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	236924372	236924372	G	A	SNP	ACTN2	ENST00000366578	human	ensembl	74_37	+1	known	missense	c.2425	p.V809I	1.000	smart_EF_hand_dom,pfscan_EF_hand_dom	pfam_Spectrin_repeat,pfam_CH-domain,pfam_EF-hand_Ca_insen,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	ACTN2	HGNC	ENSG00000077522				107	0	0	92	19	17.1171
MTR	0	genome.wustl.edu	37	1	237015832	237015832	+	Silent	SNP	T	T	C			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	237015832	237015832	T	C	SNP	MTR	ENST00000366577	human	ensembl	74_37	+1	known	silent	c.1707	p.P569	0.495	pfam_Pterin-binding,superfamily_Dihydropteroate_synth-like,pirsf_MetH,pfscan_Pterin-binding,tigrfam_MetH	pfam_S_MeTrfase,pfam_VitB12-dep_Met_synth_activ_dom,pfam_Pterin-binding,pfam_Cbl-bd_cap,pfam_Cobalamin-bd,superfamily_VitB12-dep_Met_synth_activ_dom,superfamily_S_MeTrfase,superfamily_Dihydropteroate_synth-like,superfamily_Cobalamin-bd,superfamily_Cbl-bd_cap,pirsf_MetH,pfscan_VitB12-dep_Met_synth_activ_dom,pfscan_S_MeTrfase,pfscan_Pterin-binding,tigrfam_MetH	-	no_errors	MTR	HGNC	ENSG00000116984				72	0	0	33	9	21.4286
FMN2	0	genome.wustl.edu	37	1	240256529	240256529	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	240256529	240256529	G	A	SNP	FMN2	ENST00000319653	human	ensembl	74_37	+1	known	missense	c.1120	p.A374T	0.641	NULL	pfam_FH2_Formin,pfam_Formin_homology_1,smart_FH2_Formin,pfscan_DEP_dom	-	no_errors	FMN2	HGNC	ENSG00000155816				9	0	0	3	3	50
EXO1	0	genome.wustl.edu	37	1	242042466	242042466	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	242042466	242042466	C	T	SNP	EXO1	ENST00000348581	human	ensembl	74_37	+1	known	missense	c.1930	p.P644S	0.001	NULL	pfam_XPG-I_dom,pfam_XPG_DNA_repair_N,superfamily_5-3_exonuclease_C,smart_XPG_DNA_repair_N,smart_XPG-I_dom,smart_HhH2,prints_XPG/Rad2	-	no_errors	EXO1	HGNC	ENSG00000174371				42	0	0	21	17	44.7368
PLD5	0	genome.wustl.edu	37	1	242253167	242253167	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	242253167	242253167	G	A	SNP	PLD5	ENST00000536534	human	ensembl	74_37	-1	known	missense	c.1600	p.R534W	0.000	NULL	smart_PLipase_D/transphosphatidylase	-	no_errors	PLD5	HGNC	ENSG00000180287				189	0	0	124	53	29.9435
PLCH2	0	genome.wustl.edu	37	1	2436102	2436102	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	2436102	2436102	G	A	SNP	PLCH2	ENST00000378486	human	ensembl	74_37	+1	known	missense	c.3701	p.R1234Q	0.774	NULL	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_Pleckstrin_homology,smart_EF_hand_dom,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,pfscan_EF_hand_dom,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCH2	HGNC	ENSG00000149527				30	0	0	23	3	11.5385
OR2T11	0	genome.wustl.edu	37	1	248789600	248789600	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	248789600	248789600	A	G	SNP	OR2T11	ENST00000330803	human	ensembl	74_37	-1	known	missense	c.830	p.I277T	0.002	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2T11	HGNC	ENSG00000183130				110	0	0	79	7	8.13953
HMGN2	0	genome.wustl.edu	37	1	26801138	26801138	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	26801138	26801138	G	A	SNP	HMGN2	ENST00000361427	human	ensembl	74_37	+1	known	missense	c.217	p.G73R	1.000	pfam_HMGN_fam,smart_HMGN_fam,prints_HMGN_fam	pfam_HMGN_fam,smart_HMGN_fam,prints_HMGN_fam	-	no_errors	HMGN2	HGNC	ENSG00000198830				18	0	0	16	5	23.8095
WDTC1	0	genome.wustl.edu	37	1	27589647	27589647	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	27589647	27589647	G	A	SNP	WDTC1	ENST00000319394	human	ensembl	74_37	+1	known	missense	c.53	p.R18Q	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,smart_TPR_repeat,pfscan_TPR-contain_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDTC1	HGNC	ENSG00000142784				109	0	0	63	29	31.5217
SMPDL3B	0	genome.wustl.edu	37	1	28282576	28282576	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	28282576	28282576	G	A	SNP	SMPDL3B	ENST00000373894	human	ensembl	74_37	+1	known	missense	c.988	p.A330T	0.999	pirsf_ASM-like_Pdiesterase_prd	pfam_PEstase_dom,pirsf_ASM-like_Pdiesterase_prd	-	no_errors	SMPDL3B	HGNC	ENSG00000130768				47	0	0	44	10	18.5185
LAPTM5	0	genome.wustl.edu	37	1	31206723	31206723	+	Silent	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	31206723	31206723	C	T	SNP	LAPTM5	ENST00000294507	human	ensembl	74_37	-1	known	silent	c.741	p.S247	0.271	pfam_LAPTM4/5,tigrfam_LAPTM_4A/5	pfam_LAPTM4/5,tigrfam_LAPTM_4A/5	-	no_errors	LAPTM5	HGNC	ENSG00000162511				42	0	0	32	15	31.9149
SERINC2	0	genome.wustl.edu	37	1	31901827	31901827	+	Silent	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	31901827	31901827	C	T	SNP	SERINC2	ENST00000373710	human	ensembl	74_37	+1	known	silent	c.810	p.D270	0.047	pfam_TMS_TDE	pfam_TMS_TDE	-	no_errors	SERINC2	HGNC	ENSG00000168528				201	0	0	119	46	27.8788
CSMD2	0	genome.wustl.edu	37	1	34291301	34291301	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	34291301	34291301	C	T	SNP	CSMD2	ENST00000373381	human	ensembl	74_37	-1	known	missense	c.1108	p.V370M	1.000	NULL	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD2	HGNC	ENSG00000121904				31	0	0	21	3	12.5
EPHA10	0	genome.wustl.edu	37	1	38186494	38186494	+	Silent	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	38186494	38186494	G	A	SNP	EPHA10	ENST00000427468	human	ensembl	74_37	-1	known	silent	c.2169	p.T723	0.582	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_SAM/pointed,superfamily_Fibronectin_type3,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHA10	HGNC	ENSG00000183317				63	0	0	37	16	30.1887
ZMPSTE24	0	genome.wustl.edu	37	1	40735792	40735792	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	40735792	40735792	T	C	SNP	ZMPSTE24	ENST00000372759	human	ensembl	74_37	+1	known	missense	c.620	p.V207A	1.000	pfam_Peptidase_M48	pfam_Peptidase_M48	-	no_errors	ZMPSTE24	HGNC	ENSG00000084073				168	0	0	89	6	6.31579
CYP4Z1	0	genome.wustl.edu	37	1	47534390	47534390	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	47534390	47534390	A	C	SNP	CYP4Z1	ENST00000334194	human	ensembl	74_37	+1	known	missense	c.274	p.S92R	0.011	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II	-	no_errors	CYP4Z1	HGNC	ENSG00000186160				135	0	0	112	9	7.43802
TAL1	0	genome.wustl.edu	37	1	47691501	47691501	+	Silent	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	47691501	47691501	G	A	SNP	TAL1	ENST00000371883	human	ensembl	74_37	-1	known	silent	c.60	p.D20	0.956	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	TAL1	HGNC	ENSG00000162367				39	0	0	12	6	33.3333
FAM159A	0	genome.wustl.edu	37	1	53099298	53099298	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	53099298	53099298	G	A	SNP	FAM159A	ENST00000517870	human	ensembl	74_37	+1	known	missense	c.133	p.D45N	1.000	NULL	NULL	-	no_errors	FAM159A	HGNC	ENSG00000182183				73	0	0	73	8	9.87654
SSBP3	0	genome.wustl.edu	37	1	54694484	54694484	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	54694484	54694484	C	T	SNP	SSBP3	ENST00000371320	human	ensembl	74_37	-1	known	missense	c.943	p.G315S	1.000	NULL	smart_LisH_dimerisation,pfscan_LisH_dimerisation,prints_SSDP_DNA-bd	-	no_errors	SSBP3	HGNC	ENSG00000157216				20	0	0	22	2	8.33333
MROH7-TTC4	0	genome.wustl.edu	37	1	55119781	55119781	+	Silent	SNP	C	C	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	55119781	55119781	C	A	SNP	MROH7-TTC4	ENST00000414150	human	ensembl	74_37	+1	known	silent	c.1182	p.I394	0.000	NULL	superfamily_ARM-type_fold	-	no_errors	MROH7-TTC4	HGNC	ENSG00000271723				33	0	0	20	9	31.0345
ANGPTL3	0	genome.wustl.edu	37	1	63068014	63068014	+	Silent	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	63068014	63068014	G	A	SNP	ANGPTL3	ENST00000371129	human	ensembl	74_37	+1	known	silent	c.894	p.T298	0.212	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	-	no_errors	ANGPTL3	HGNC	ENSG00000132855				159	0	0	100	25	20
FOXD3	0	genome.wustl.edu	37	1	63789968	63789968	+	Silent	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	63789968	63789968	G	A	SNP	FOXD3	ENST00000371116	human	ensembl	74_37	+1	known	silent	c.1239	p.A413	0.149	NULL	pfam_TF_fork_head,smart_TF_fork_head,prints_TF_fork_head,pfscan_TF_fork_head	-	no_errors	FOXD3	HGNC	ENSG00000187140				12	0	0	2	4	66.6667
CACHD1	0	genome.wustl.edu	37	1	65143941	65143941	+	Silent	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	65143941	65143941	C	T	SNP	CACHD1	ENST00000371073	human	ensembl	74_37	+1	known	silent	c.3192	p.F1064	0.426	NULL	pfam_VWA_N,pfam_Cache_domain,pfscan_VWF_A	-	no_errors	CACHD1	HGNC	ENSG00000158966				68	0	0	47	20	29.8507
PDE4B	0	genome.wustl.edu	37	1	66798170	66798170	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	66798170	66798170	T	C	SNP	PDE4B	ENST00000371045	human	ensembl	74_37	+1	known	missense	c.98	p.M33T	1.000	NULL	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE4B	HGNC	ENSG00000184588				96	0	0	58	12	17.1429
LHX8	0	genome.wustl.edu	37	1	75606736	75606736	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	75606736	75606736	C	T	SNP	LHX8	ENST00000294638	human	ensembl	74_37	+1	known	missense	c.334	p.H112Y	1.000	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeobox_dom,pfscan_Znf_LIM,pfscan_Homeobox_dom	-	no_errors	LHX8	HGNC	ENSG00000162624				104	0	0	78	46	37.0968
UTS2	0	genome.wustl.edu	37	1	7910968	7910968	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	7910968	7910968	C	T	SNP	UTS2	ENST00000054668	human	ensembl	74_37	-1	known	missense	c.163	p.A55T	0.000	NULL	pfam_Urotensin_II	-	no_errors	UTS2	HGNC	ENSG00000049247				71	0	0	40	16	28.5714
SFXN3	0	genome.wustl.edu	37	10	102795417	102795417	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	10	102795417	102795417	T	C	SNP	SFXN3	ENST00000224807	human	ensembl	74_37	+1	known	missense	c.337	p.F113L	1.000	pfam_Mtc,tigrfam_Mtc	pfam_Mtc,tigrfam_Mtc	-	no_errors	SFXN3	HGNC	ENSG00000107819				44	0	0	36	4	10
LBX1	0	genome.wustl.edu	37	10	102987488	102987488	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	10	102987488	102987488	G	A	SNP	LBX1	ENST00000370193	human	ensembl	74_37	-1	known	missense	c.385	p.R129C	0.997	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_HTH_motif	-	no_errors	LBX1	HGNC	ENSG00000138136				79	0	0	70	4	5.40541
NPM3	0	genome.wustl.edu	37	10	103541521	103541521	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	10	103541521	103541521	G	A	SNP	NPM3	ENST00000370110	human	ensembl	74_37	-1	known	missense	c.509	p.P170L	1.000	NULL	superfamily_Nucleoplasmin_core_dom	-	no_errors	NPM3	HGNC	ENSG00000107833				264	0	0	185	70	27.451
LDB1	0	genome.wustl.edu	37	10	103871259	103871259	+	Silent	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	10	103871259	103871259	C	T	SNP	LDB1	ENST00000425280	human	ensembl	74_37	-1	known	silent	c.60	p.P20	1.000	NULL	NULL	-	no_errors	LDB1	HGNC	ENSG00000198728				42	0	0	28	6	17.6471
GBF1	0	genome.wustl.edu	37	10	104119976	104119976	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	10	104119976	104119976	C	T	SNP	GBF1	ENST00000369983	human	ensembl	74_37	+1	known	missense	c.1213	p.R405C	0.998	superfamily_ARM-type_fold	pfam_Sec7_dom,superfamily_Sec7_dom,superfamily_ARM-type_fold,smart_Sec7_dom,pfscan_Sec7_dom	-	no_errors	GBF1	HGNC	ENSG00000107862				468	0	0	440	28	5.98291
WDR96	0	genome.wustl.edu	37	10	105956617	105956617	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	10	105956617	105956617	A	T	SNP	WDR96	ENST00000357060	human	ensembl	74_37	-1	known	missense	c.1287	p.N429K	0.019	superfamily_WD40_repeat_dom	superfamily_WD40_repeat_dom,superfamily_Quino_amine_DH_bsu	-	no_errors	WDR96	HGNC	ENSG00000197748				65	0	0	52	3	5.45455
SORCS1	0	genome.wustl.edu	37	10	108923921	108923921	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	10	108923921	108923921	C	G	SNP	SORCS1	ENST00000344440	human	ensembl	74_37	-1	known	missense	c.364	p.E122Q	0.005	NULL	pfam_PKD_dom,superfamily_PKD_dom,smart_VPS10,pfscan_PKD_dom	-	no_errors	SORCS1	HGNC	ENSG00000108018				69	0	0	42	14	25
SHOC2	0	genome.wustl.edu	37	10	112724378	112724378	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	10	112724378	112724378	G	A	SNP	SHOC2	ENST00000369452	human	ensembl	74_37	+1	known	missense	c.262	p.A88T	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	SHOC2	HGNC	ENSG00000108061				103	0	0	68	28	29.1667
TCF7L2	0	genome.wustl.edu	37	10	114912188	114912188	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	10	114912188	114912188	C	T	SNP	TCF7L2	ENST00000355995	human	ensembl	74_37	+1	known	missense	c.1258	p.R420W	1.000	superfamily_HMG_box_dom	pfam_CTNNB1-bd_N,pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	TCF7L2	HGNC	ENSG00000148737				126	1	0.787402	105	50	32.2581
HSPA12A	0	genome.wustl.edu	37	10	118434447	118434447	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	10	118434447	118434447	G	A	SNP	HSPA12A	ENST00000369209	human	ensembl	74_37	-1	known	missense	c.1873	p.R625C	0.993	NULL	NULL	-	no_errors	HSPA12A	HGNC	ENSG00000165868				78	0	0	55	34	38.2022
KIAA1598	0	genome.wustl.edu	37	10	118713647	118713647	+	Silent	SNP	A	A	G			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	10	118713647	118713647	A	G	SNP	KIAA1598	ENST00000392903	human	ensembl	74_37	-1	known	silent	c.342	p.T114	0.986	NULL	superfamily_Adenylate_cyclase-assoc_CAP_N	-	no_errors	KIAA1598	HGNC	ENSG00000187164				46	0	0	35	16	31.3725
UPF2	0	genome.wustl.edu	37	10	11971928	11971928	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	10	11971928	11971928	G	A	SNP	UPF2	ENST00000356352	human	ensembl	74_37	-1	known	missense	c.3745	p.R1249W	1.000	NULL	pfam_MIF4G-like_typ-3,pfam_Up-fram_suppressor-2,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3	-	no_errors	UPF2	HGNC	ENSG00000151461				103	0	0	82	7	7.86517
PRLHR	0	genome.wustl.edu	37	10	120354648	120354648	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	10	120354648	120354648	C	T	SNP	PRLHR	ENST00000239032	human	ensembl	74_37	-1	known	missense	c.109	p.G37R	0.119	prints_Prolrel_pep_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Prolrel_pep_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	PRLHR	HGNC	ENSG00000119973				46	0	0	29	11	27.5
MCM10	0	genome.wustl.edu	37	10	13228168	13228168	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	10	13228168	13228168	G	A	SNP	MCM10	ENST00000484800	human	ensembl	74_37	+1	known	missense	c.1106	p.C369Y	1.000	NULL	pfam_Rep_factor_Mcm10,pfam_Znf_Mcm10/DnaG	-	no_errors	MCM10	HGNC	ENSG00000065328				173	0	0	82	56	40.5797
GPR123	0	genome.wustl.edu	37	10	134916258	134916258	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	10	134916258	134916258	G	A	SNP	GPR123	ENST00000607359	human	ensembl	74_37	+1	putative	missense	c.2473	p.A825T	1.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	-	no_errors	GPR123	HGNC	ENSG00000197177				30	0	0	14	6	30
ADAM8	0	genome.wustl.edu	37	10	135083962	135083962	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	10	135083962	135083962	G	A	SNP	ADAM8	ENST00000445355	human	ensembl	74_37	-1	known	missense	c.1687	p.R563C	0.009	pfam_ADAM_Cys-rich,smart_ADAM_Cys-rich	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_Blood-coag_inhib_Disintegrin,pfam_ADAM_Cys-rich,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM8	HGNC	ENSG00000151651				70	0	0	55	35	38.8889
ADARB2	0	genome.wustl.edu	37	10	1406001	1406001	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	10	1406001	1406001	C	T	SNP	ADARB2	ENST00000381312	human	ensembl	74_37	-1	known	missense	c.299	p.R100Q	1.000	NULL	pfam_A_deamin,pfam_dsRNA-bd_dom,smart_dsRNA-bd_dom,smart_A_deamin,pfscan_dsRNA-bd_dom,pfscan_A_deamin	-	no_errors	ADARB2	HGNC	ENSG00000185736				30	0	0	11	10	47.619
VIM	0	genome.wustl.edu	37	10	17271610	17271610	+	Silent	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	10	17271610	17271610	G	A	SNP	VIM	ENST00000224237	human	ensembl	74_37	+1	known	silent	c.189	p.T63	0.686	pfam_Intermed_filament_DNA-bd	pfam_IF,pfam_Intermed_filament_DNA-bd,superfamily_Prefoldin	-	no_errors	VIM	HGNC	ENSG00000026025				8	0	0	9	4	30.7692
ENKUR	0	genome.wustl.edu	37	10	25284784	25284784	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	10	25284784	25284784	G	A	SNP	ENKUR	ENST00000331161	human	ensembl	74_37	-1	known	missense	c.238	p.R80W	0.000	NULL	NULL	-	no_errors	ENKUR	HGNC	ENSG00000151023				72	0	0	45	19	29.6875
MPP7	0	genome.wustl.edu	37	10	28409129	28409129	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	10	28409129	28409129	T	A	SNP	MPP7	ENST00000337532	human	ensembl	74_37	-1	known	missense	c.881	p.Q294L	1.000	pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain	pfam_GK/Ca_channel_bsu,pfam_L27_C,pfam_PDZ,pfam_SH3_2,pfam_SH3_domain,superfamily_P-loop_NTPase,superfamily_SH3_domain,superfamily_PDZ,smart_L27,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like,prints_SH3_domain	-	no_errors	MPP7	HGNC	ENSG00000150054				58	0	0	32	19	37.2549
ZNF438	0	genome.wustl.edu	37	10	31137596	31137596	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	10	31137596	31137596	G	A	SNP	ZNF438	ENST00000361310	human	ensembl	74_37	-1	known	nonsense	c.1738	p.R580*	0.144	smart_Znf_C2H2-like	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF438	HGNC	ENSG00000183621				85	0	0	63	25	28.4091
NAMPTL	0	genome.wustl.edu	37	10	36811976	36811976	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	10	36811976	36811976	T	C	SNP	NAMPTL	ENST00000543053	human	ensembl	74_37	-1	known	missense	c.131	p.K44R	1.000	pfam_Nic_PRibTrfase-Fam,superfamily_Quinolinate_PRibosylTrfase_C	pfam_Nic_PRibTrfase-Fam,superfamily_Quinolinate_PRibosylTrfase_C	-	no_errors	NAMPTL	HGNC	ENSG00000229644				52	0	0	39	14	26.4151
ANKRD30A	0	genome.wustl.edu	37	10	37430700	37430700	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	10	37430700	37430700	C	A	SNP	ANKRD30A	ENST00000361713	human	ensembl	74_37	+1	known	missense	c.707	p.P236H	0.026	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD30A	HGNC	ENSG00000148513				49	0	0	42	12	22.2222
ZNF248	0	genome.wustl.edu	37	10	38120778	38120778	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	10	38120778	38120778	C	T	SNP	ZNF248	ENST00000357328	human	ensembl	74_37	-1	known	missense	c.1505	p.C502Y	0.991	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF248	HGNC	ENSG00000198105				108	0	0	77	22	22.2222
SYT15	0	genome.wustl.edu	37	10	46967470	46967470	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	10	46967470	46967470	G	A	SNP	SYT15	ENST00000374323	human	ensembl	74_37	-1	known	missense	c.766	p.R256C	0.775	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	SYT15	HGNC	ENSG00000204176				117	1	0.847458	92	17	15.5963
RBP3	0	genome.wustl.edu	37	10	48389220	48389220	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	10	48389220	48389220	G	C	SNP	RBP3	ENST00000224600	human	ensembl	74_37	-1	known	missense	c.1658	p.A553G	1.000	pfam_Interphotoreceptor_retinol-bd,smart_Interphotoreceptor_retinol-bd	pfam_Interphotoreceptor_retinol-bd,pfam_Interphotorcpt_retinol-bd_N,smart_Interphotoreceptor_retinol-bd	-	no_errors	RBP3	HGNC	ENSG00000107618				72	0	0	55	16	22.5352
PHYHIPL	0	genome.wustl.edu	37	10	60994193	60994193	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	10	60994193	60994193	G	A	SNP	PHYHIPL	ENST00000373880	human	ensembl	74_37	+1	known	missense	c.236	p.R79H	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	PHYHIPL	HGNC	ENSG00000165443				76	0	0	40	14	25.9259
CDH23	0	genome.wustl.edu	37	10	73270932	73270932	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	10	73270932	73270932	C	T	SNP	CDH23	ENST00000461841	human	ensembl	74_37	+1	known	missense	c.527	p.T176I	0.069	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH23	HGNC	ENSG00000107736				117	0	0	101	25	19.8413
VCL	0	genome.wustl.edu	37	10	75868773	75868773	+	Silent	SNP	T	T	C			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	10	75868773	75868773	T	C	SNP	VCL	ENST00000211998	human	ensembl	74_37	+1	known	silent	c.2604	p.G868	0.996	pfam_Vinculin/catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Vinculin	-	no_errors	VCL	HGNC	ENSG00000035403				69	0	0	60	23	27.7108
KCNMA1	0	genome.wustl.edu	37	10	79397198	79397198	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	10	79397198	79397198	G	A	SNP	KCNMA1	ENST00000406533	human	ensembl	74_37	-1	known	missense	c.203	p.A68V	1.000	NULL	pfam_K_chnl_Ca-activ_BK_asu,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,pfam_RCK_N,prints_K_chnl_Ca-activ_BK_asu,prints_K_chnl	-	no_errors	KCNMA1	HGNC	ENSG00000156113				30	0	0	18	4	18.1818
RPS24	0	genome.wustl.edu	37	10	79795304	79795304	+	Silent	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	10	79795304	79795304	G	A	SNP	RPS24	ENST00000440692	human	ensembl	74_37	+1	known	silent	c.105	p.V35	0.811	pfam_Ribosomal_S24e,superfamily_Ribosomal_L23/L15e_core_dom	pfam_Ribosomal_S24e,superfamily_Ribosomal_L23/L15e_core_dom	-	no_errors	RPS24	HGNC	ENSG00000138326				48	0	0	32	18	36
GATA3	0	genome.wustl.edu	37	10	8100351	8100351	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	10	8100351	8100351	G	A	SNP	GATA3	ENST00000379328	human	ensembl	74_37	+1	known	missense	c.325	p.A109T	1.000	pirsf_TF_GATA-1/2/3	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485				151	0	0	109	26	19.2593
GATA3	0	genome.wustl.edu	37	10	8115975	8115975	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	10	8115975	8115975	G	A	SNP	GATA3	ENST00000379328	human	ensembl	74_37	+1	known	missense	c.1324	p.A442T	1.000	pirsf_TF_GATA-1/2/3	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485				71	0	0	61	5	7.57576
PANK1	0	genome.wustl.edu	37	10	91353063	91353063	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	10	91353063	91353063	A	G	SNP	PANK1	ENST00000307534	human	ensembl	74_37	-1	known	missense	c.1502	p.M501T	1.000	pfam_Type_II_PanK,tigrfam_Type_II_PanK	pfam_Type_II_PanK,tigrfam_Type_II_PanK	-	no_errors	PANK1	HGNC	ENSG00000152782				41	0	0	26	12	31.5789
PIK3AP1	0	genome.wustl.edu	37	10	98386589	98386589	+	Silent	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	10	98386589	98386589	C	T	SNP	PIK3AP1	ENST00000339364	human	ensembl	74_37	-1	known	silent	c.1545	p.T515	0.001	NULL	superfamily_Ankyrin_rpt-contain_dom	-	no_errors	PIK3AP1	HGNC	ENSG00000155629				105	0	0	71	19	21.1111
PGR	0	genome.wustl.edu	37	11	100999479	100999479	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	11	100999479	100999479	C	A	SNP	PGR	ENST00000325455	human	ensembl	74_37	-1	known	missense	c.323	p.S108I	0.715	pfam_Progest_rcpt,prints_Progest_rcpt	pfam_Progest_rcpt,pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Progest_rcpt,prints_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt	-	no_errors	PGR	HGNC	ENSG00000082175				32	0	0	25	9	26.4706
MUC6	0	genome.wustl.edu	37	11	1016092	1016092	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	11	1016092	1016092	G	T	SNP	MUC6	ENST00000421673	human	ensembl	74_37	-1	known	missense	c.6709	p.P2237T	0.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_Cys_knot_C,pfscan_Cys_knot_C	-	no_errors	MUC6	HGNC	ENSG00000184956				103	0	0	73	32	30.4762
C11orf88	0	genome.wustl.edu	37	11	111385697	111385697	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	11	111385697	111385697	G	A	SNP	C11orf88	ENST00000529167	human	ensembl	74_37	+1	known	missense	c.188	p.R63H	0.995	NULL	NULL	-	no_errors	C11orf88	HGNC	ENSG00000183644				67	0	0	42	19	31.1475
LAYN	0	genome.wustl.edu	37	11	111431078	111431078	+	Silent	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	11	111431078	111431078	C	T	SNP	LAYN	ENST00000375615	human	ensembl	74_37	+1	known	silent	c.1044	p.S348	0.949	NULL	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	LAYN	HGNC	ENSG00000204381				100	1	0.990099	80	24	23.0769
CSNK2A3	0	genome.wustl.edu	37	11	11374613	11374613	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	11	11374613	11374613	G	C	SNP	CSNK2A3	ENST00000528848	human	ensembl	74_37	-1	novel	missense	c.54	p.H18Q	0.991	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Aminoglycoside_PTrfase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CSNK2A3	HGNC	ENSG00000254598				69	0	0	51	26	33.7662
NXPE1	0	genome.wustl.edu	37	11	114401086	114401086	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	11	114401086	114401086	T	C	SNP	NXPE1	ENST00000424269	human	ensembl	74_37	-1	known	missense	c.644	p.H215R	0.005	pfam_NXPH/NXPE	pfam_NXPH/NXPE,superfamily_Ig_E-set	-	no_errors	NXPE1	HGNC	ENSG00000095110				60	0	0	51	21	29.1667
CBL	0	genome.wustl.edu	37	11	119146846	119146846	+	Splice_Site	SNP	T	T	C			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	11	119146846	119146846	T	C	SNP	CBL	ENST00000264033	human	ensembl	74_37	+1	known	splice_site	c.1007+2	e6+2	1.000	-	-	-	no_errors	CBL	HGNC	ENSG00000110395				78	0	0	54	22	28.9474
OR8D2	0	genome.wustl.edu	37	11	124189676	124189676	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	11	124189676	124189676	C	A	SNP	OR8D2	ENST00000357438	human	ensembl	74_37	-1	known	missense	c.418	p.V140F	0.024	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8D2	HGNC	ENSG00000197263				64	0	0	62	14	18.4211
ACRV1	0	genome.wustl.edu	37	11	125548009	125548009	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	11	125548009	125548009	G	T	SNP	ACRV1	ENST00000533904	human	ensembl	74_37	-1	known	missense	c.236	p.T79N	0.000	NULL	NULL	-	no_errors	ACRV1	HGNC	ENSG00000134940				67	0	0	46	10	17.8571
TIRAP	0	genome.wustl.edu	37	11	126162737	126162737	+	Silent	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	11	126162737	126162737	C	T	SNP	TIRAP	ENST00000392678	human	ensembl	74_37	+1	known	silent	c.433	p.L145	1.000	pfam_TIR_dom,superfamily_TIR_dom,pirsf_Tol-interleuk_rcpt_adapt_Tirap,pfscan_TIR_dom	pfam_TIR_dom,superfamily_TIR_dom,pirsf_Tol-interleuk_rcpt_adapt_Tirap,pfscan_TIR_dom	-	no_errors	TIRAP	HGNC	ENSG00000150455				23	0	0	11	4	26.6667
ST14	0	genome.wustl.edu	37	11	130069878	130069878	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	11	130069878	130069878	C	T	SNP	ST14	ENST00000278742	human	ensembl	74_37	+1	known	missense	c.1840	p.R614C	0.909	pirsf_Peptidase_S1A_matripase,superfamily_Trypsin-like_Pept_dom,superfamily_LDrepeatLR_classA_rpt,smart_Peptidase_S1	pirsf_Peptidase_S1A_matripase,pfam_Peptidase_S1,pfam_LDrepeatLR_classA_rpt,pfam_CUB_dom,pfam_SEA_dom,superfamily_Trypsin-like_Pept_dom,superfamily_CUB_dom,superfamily_LDrepeatLR_classA_rpt,smart_CUB_dom,smart_LDrepeatLR_classA_rpt,smart_Peptidase_S1,prints_LDrepeatLR_classA_rpt,prints_Peptidase_S1A,pfscan_CUB_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_Peptidase_S1	-	no_errors	ST14	HGNC	ENSG00000149418				90	0	0	60	41	40.5941
IGSF9B	0	genome.wustl.edu	37	11	133791120	133791120	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	11	133791120	133791120	C	T	SNP	IGSF9B	ENST00000321016	human	ensembl	74_37	-1	known	missense	c.2500	p.V834M	1.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	IGSF9B	HGNC	ENSG00000080854				59	0	0	43	9	17.3077
MRGPRX3	0	genome.wustl.edu	37	11	18158959	18158959	+	Silent	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	11	18158959	18158959	G	A	SNP	MRGPRX3	ENST00000396275	human	ensembl	74_37	+1	known	silent	c.210	p.A70	0.022	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	MRGPRX3	HGNC	ENSG00000179826				76	0	0	61	24	28.2353
IGSF22	0	genome.wustl.edu	37	11	18736149	18736149	+	Silent	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	11	18736149	18736149	G	A	SNP	IGSF22	ENST00000513874	human	ensembl	74_37	-1	known	silent	c.1554	p.S518	0.913	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	IGSF22	HGNC	ENSG00000179057				62	0	0	50	23	31.5068
ANO5	0	genome.wustl.edu	37	11	22301182	22301182	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	11	22301182	22301182	G	A	SNP	ANO5	ENST00000324559	human	ensembl	74_37	+1	known	missense	c.2613	p.M871I	0.999	NULL	pfam_Anoctamin	-	no_errors	ANO5	HGNC	ENSG00000171714				68	0	0	51	3	5.55556
GAS2	0	genome.wustl.edu	37	11	22833350	22833350	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	11	22833350	22833350	C	T	SNP	GAS2	ENST00000278187	human	ensembl	74_37	+1	known	missense	c.730	p.H244Y	1.000	pfam_GAS2_dom,superfamily_GAS2_dom,smart_GAS2_dom	pfam_GAS2_dom,pfam_CH-domain,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_GAS2_dom,pfscan_CH-domain	-	no_errors	GAS2	HGNC	ENSG00000148935				93	0	0	75	25	25
DCDC1	0	genome.wustl.edu	37	11	31327839	31327839	+	Silent	SNP	T	T	C			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	11	31327839	31327839	T	C	SNP	DCDC1	ENST00000452803	human	ensembl	74_37	-1	known	silent	c.531	p.T177	1.000	NULL	pfscan_Doublecortin_dom	-	no_errors	DCDC1	HGNC	ENSG00000170959				86	0	0	48	5	9.43396
CD59	0	genome.wustl.edu	37	11	33731873	33731873	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	11	33731873	33731873	G	A	SNP	CD59	ENST00000533403	human	ensembl	74_37	-1	novel	missense	c.308	p.T103I	0.000	NULL	pfam_LY6_UPAR	-	no_errors	CD59	HGNC	ENSG00000085063				60	0	0	40	29	42.029
NUP98	0	genome.wustl.edu	37	11	3726529	3726529	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	11	3726529	3726529	G	A	SNP	NUP98	ENST00000324932	human	ensembl	74_37	-1	known	missense	c.2983	p.R995C	0.999	NULL	pfam_Nup96,pfam_Peptidase_S59,superfamily_Peptidase_S59	-	no_errors	NUP98	HGNC	ENSG00000110713				97	0	0	66	13	16.4557
ALKBH3	0	genome.wustl.edu	37	11	43913679	43913679	+	Silent	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	11	43913679	43913679	C	T	SNP	ALKBH3	ENST00000302708	human	ensembl	74_37	+1	known	silent	c.459	p.H153	1.000	NULL	pfam_Oxoglu/Fe-dep_dioxygenase	-	no_errors	ALKBH3	HGNC	ENSG00000166199				49	0	0	31	9	22.5
ZNF408	0	genome.wustl.edu	37	11	46726219	46726219	+	Silent	SNP	A	A	G			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	11	46726219	46726219	A	G	SNP	ZNF408	ENST00000311764	human	ensembl	74_37	+1	known	silent	c.969	p.P323	0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF408	HGNC	ENSG00000175213				67	0	0	62	4	6.06061
MADD	0	genome.wustl.edu	37	11	47312235	47312235	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	11	47312235	47312235	C	T	SNP	MADD	ENST00000311027	human	ensembl	74_37	+1	known	missense	c.3229	p.R1077W	1.000	NULL	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	MADD	HGNC	ENSG00000110514				81	0	0	56	6	9.67742
FNBP4	0	genome.wustl.edu	37	11	47744609	47744609	+	Silent	SNP	T	T	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	11	47744609	47744609	T	A	SNP	FNBP4	ENST00000263773	human	ensembl	74_37	-1	known	silent	c.2724	p.P908	0.770	NULL	pfam_WW_dom,superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom	-	no_errors	FNBP4	HGNC	ENSG00000109920				11	0	0	8	5	38.4615
OR4C11	0	genome.wustl.edu	37	11	55371101	55371101	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	11	55371101	55371101	C	T	SNP	OR4C11	ENST00000302231	human	ensembl	74_37	-1	known	missense	c.749	p.G250D	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4C11	HGNC	ENSG00000172188				81	0	0	44	18	29.0323
OR4S2	0	genome.wustl.edu	37	11	55418792	55418792	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	11	55418792	55418792	C	T	SNP	OR4S2	ENST00000312422	human	ensembl	74_37	+1	known	missense	c.413	p.T138I	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4S2	HGNC	ENSG00000174982				198	0	0	152	43	22.0513
OR10AG1	0	genome.wustl.edu	37	11	55735148	55735148	+	Silent	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	11	55735148	55735148	C	T	SNP	OR10AG1	ENST00000312345	human	ensembl	74_37	-1	known	silent	c.792	p.L264	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10AG1	HGNC	ENSG00000174970				53	0	0	25	3	10.7143
CTNND1	0	genome.wustl.edu	37	11	57571140	57571140	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	11	57571140	57571140	G	A	SNP	CTNND1	ENST00000399050	human	ensembl	74_37	+1	known	missense	c.1468	p.V490M	1.000	superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	CTNND1	HGNC	ENSG00000198561				31	0	0	10	7	41.1765
ZFP91	0	genome.wustl.edu	37	11	58384917	58384917	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	11	58384917	58384917	C	T	SNP	ZFP91	ENST00000316059	human	ensembl	74_37	+1	known	missense	c.1451	p.T484M	0.089	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFP91	HGNC	ENSG00000186660				39	0	0	27	15	35.7143
OR56A1	0	genome.wustl.edu	37	11	6048430	6048430	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	11	6048430	6048430	G	T	SNP	OR56A1	ENST00000316650	human	ensembl	74_37	-1	known	missense	c.505	p.L169I	0.076	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR56A1	HGNC	ENSG00000180934				110	0	0	89	29	24.5763
NAA40	0	genome.wustl.edu	37	11	63719910	63719910	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	11	63719910	63719910	C	T	SNP	NAA40	ENST00000377793	human	ensembl	74_37	+1	known	nonsense	c.283	p.R95*	1.000	superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	pfam_GNAT_dom,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	-	no_errors	NAA40	HGNC	ENSG00000110583				111	1	0.892857	74	27	26.7327
DRD4	0	genome.wustl.edu	37	11	639781	639781	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	11	639781	639781	C	T	SNP	DRD4	ENST00000176183	human	ensembl	74_37	+1	known	missense	c.532	p.R178C	0.939	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Dopamine_D4_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Dopamine_D4_rcpt,prints_Dopamine_rcpt	-	no_errors	DRD4	HGNC	ENSG00000069696				14	0	0	13	4	23.5294
CCDC88B	0	genome.wustl.edu	37	11	64111563	64111563	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	11	64111563	64111563	G	A	SNP	CCDC88B	ENST00000356786	human	ensembl	74_37	+1	known	missense	c.1550	p.G517D	0.000	NULL	pfam_Hook-related_fam	-	no_errors	CCDC88B	HGNC	ENSG00000168071				56	0	0	40	20	33.3333
SLC22A11	0	genome.wustl.edu	37	11	64337280	64337280	+	Silent	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	11	64337280	64337280	G	A	SNP	SLC22A11	ENST00000301891	human	ensembl	74_37	+1	known	silent	c.1539	p.P513	0.420	pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A11	HGNC	ENSG00000168065				111	0	0	67	35	34.3137
ATG2A	0	genome.wustl.edu	37	11	64677303	64677303	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	11	64677303	64677303	G	A	SNP	ATG2A	ENST00000421419	human	ensembl	74_37	-1	known	missense	c.1957	p.R653W	1.000	NULL	pfam_Autophagy-rel_C	-	no_errors	ATG2A	HGNC	ENSG00000110046				50	0	0	29	12	29.2683
VPS51	0	genome.wustl.edu	37	11	64879067	64879067	+	RNA	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	11	64879067	64879067	C	T	SNP	VPS51	ENST00000527646	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	VPS51	HGNC	ENSG00000149823				13	0	0	13	8	38.0952
ARFIP2	0	genome.wustl.edu	37	11	6499032	6499032	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	11	6499032	6499032	C	A	SNP	ARFIP2	ENST00000254584	human	ensembl	74_37	-1	known	missense	c.786	p.Q262H	1.000	pfam_AH_dom,pfscan_AH_dom	pfam_AH_dom,pfscan_AH_dom	-	no_errors	ARFIP2	HGNC	ENSG00000132254				62	0	0	45	22	32.8358
NPAS4	0	genome.wustl.edu	37	11	66189603	66189603	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	11	66189603	66189603	C	T	SNP	NPAS4	ENST00000311034	human	ensembl	74_37	+1	known	missense	c.188	p.A63V	0.687	NULL	pfam_PAS_fold_3,superfamily_PAS,smart_PAS,pfscan_PAS	-	no_errors	NPAS4	HGNC	ENSG00000174576				59	0	0	32	23	41.8182
ENSG00000250105	0	genome.wustl.edu	37	11	66326653	66326653	+	RNA	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	11	66326653	66326653	G	A	SNP	ENSG00000250105	ENST00000504911	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CTD-3074O7.2	Clone_based_vega_gene	ENSG00000250105				31	0	0	18	8	30.7692
RBM4	0	genome.wustl.edu	37	11	66407528	66407528	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	11	66407528	66407528	G	A	SNP	RBM4	ENST00000310092	human	ensembl	74_37	+1	known	missense	c.346	p.V116I	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,pfam_Znf_CCHC,smart_RRM_dom,smart_Znf_CCHC,pfscan_Znf_CCHC,pfscan_RRM_dom	-	no_errors	RBM4	HGNC	ENSG00000173933				125	0	0	96	29	23.2
ALDH3B2	0	genome.wustl.edu	37	11	67432885	67432885	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	11	67432885	67432885	C	T	SNP	ALDH3B2	ENST00000349015	human	ensembl	74_37	-1	known	missense	c.577	p.D193N	0.001	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	-	no_errors	ALDH3B2	HGNC	ENSG00000132746				102	1	0.970874	64	23	26.4368
LRP5	0	genome.wustl.edu	37	11	68201267	68201267	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	11	68201267	68201267	G	A	SNP	LRP5	ENST00000294304	human	ensembl	74_37	+1	known	missense	c.3961	p.A1321T	0.413	pirsf_Low_density_Lipo_rcpt-rel_p5/6,pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,prints_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pirsf_Low_density_Lipo_rcpt-rel_p5/6,pfam_LDLR_classB_rpt,pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDLR_classB_rpt,smart_EG-like_dom,smart_LDrepeatLR_classA_rpt,prints_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP5	HGNC	ENSG00000162337				54	0	0	27	14	34.1463
MTL5	0	genome.wustl.edu	37	11	68478438	68478438	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	11	68478438	68478438	A	G	SNP	MTL5	ENST00000255087	human	ensembl	74_37	-1	known	missense	c.1238	p.M413T	1.000	NULL	pfam_CRC,superfamily_Thionin	-	no_errors	MTL5	HGNC	ENSG00000132749				39	0	0	31	11	26.1905
IGHMBP2	0	genome.wustl.edu	37	11	68704522	68704522	+	Silent	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	11	68704522	68704522	G	A	SNP	IGHMBP2	ENST00000255078	human	ensembl	74_37	+1	known	silent	c.2574	p.Q858	0.000	NULL	pfam_R3H_ss-bd,pfam_Znf_AN1,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_AAA+_ATPase,smart_R3H_ss-bd,smart_Znf_AN1,pfscan_Znf_AN1,pfscan_R3H_ss-bd,tigrfam_DNA_helicase_put	-	no_errors	IGHMBP2	HGNC	ENSG00000132740				36	0	0	30	4	11.7647
PHOX2A	0	genome.wustl.edu	37	11	71952153	71952153	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	11	71952153	71952153	C	T	SNP	PHOX2A	ENST00000298231	human	ensembl	74_37	-1	known	missense	c.398	p.R133H	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	PHOX2A	HGNC	ENSG00000165462				35	0	0	40	5	11.1111
PDDC1	0	genome.wustl.edu	37	11	771381	771381	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	11	771381	771381	G	A	SNP	PDDC1	ENST00000397472	human	ensembl	74_37	-1	known	missense	c.496	p.P166S	1.000	NULL	pfam_ThiJ/PfpI	-	no_errors	PDDC1	HGNC	ENSG00000177225				22	0	0	21	5	19.2308
FAT3	0	genome.wustl.edu	37	11	92569759	92569759	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	11	92569759	92569759	C	T	SNP	FAT3	ENST00000298047	human	ensembl	74_37	+1	known	missense	c.10114	p.P3372S	0.812	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323				69	0	0	59	18	23.3766
MAML2	0	genome.wustl.edu	37	11	95712528	95712528	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	11	95712528	95712528	G	T	SNP	MAML2	ENST00000524717	human	ensembl	74_37	-1	known	missense	c.3055	p.Q1019K	1.000	NULL	pfam_Neuroggenic_mastermind-like_N	-	no_errors	MAML2	HGNC	ENSG00000184384				23	0	0	17	2	10.5263
UTP20	0	genome.wustl.edu	37	12	101767445	101767445	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	12	101767445	101767445	A	G	SNP	UTP20	ENST00000261637	human	ensembl	74_37	+1	known	missense	c.7031	p.K2344R	1.000	superfamily_ARM-type_fold	pfam_DRIM,superfamily_ARM-type_fold	-	no_errors	UTP20	HGNC	ENSG00000120800				53	0	0	45	15	25
CHPT1	0	genome.wustl.edu	37	12	102091823	102091823	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	12	102091823	102091823	G	C	SNP	CHPT1	ENST00000229266	human	ensembl	74_37	+1	known	missense	c.184	p.A62P	1.000	pfam_CDP-OH_P_trans,pirsf_CHOPT	pfam_CDP-OH_P_trans,pirsf_CHOPT	-	no_errors	CHPT1	HGNC	ENSG00000111666				24	0	0	9	3	25
TXNRD1	0	genome.wustl.edu	37	12	104682640	104682640	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	12	104682640	104682640	G	A	SNP	TXNRD1	ENST00000378070	human	ensembl	74_37	+1	known	missense	c.83	p.R28Q	0.387	NULL	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_Pyr_nucl-diS_OxRdtase_dimer,pfam_Pyr_OxRdtase_NAD-bd_dom,pfam_FAD_bind_dom,superfamily_FAD/NAD-linked_Rdtase_dimer,superfamily_Thioredoxin-like_fold,prints_FAD_pyr_nucl-diS_OxRdtase,prints_Hg_reductase,prints_Pyridine_nuc-diS_OxRdtase_2,tigrfam_Thioredoxin/glutathione_Rdtase	-	no_errors	TXNRD1	HGNC	ENSG00000198431				26	0	0	14	12	46.1538
TMEM119	0	genome.wustl.edu	37	12	108985723	108985723	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	12	108985723	108985723	C	G	SNP	TMEM119	ENST00000392806	human	ensembl	74_37	-1	known	missense	c.437	p.G146A	0.984	NULL	NULL	-	no_errors	TMEM119	HGNC	ENSG00000183160				16	0	0	7	4	36.3636
ALDH2	0	genome.wustl.edu	37	12	112237855	112237855	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	12	112237855	112237855	C	T	SNP	ALDH2	ENST00000261733	human	ensembl	74_37	+1	known	missense	c.1394	p.A465V	1.000	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	-	no_errors	ALDH2	HGNC	ENSG00000111275				29	0	0	18	9	33.3333
OAS3	0	genome.wustl.edu	37	12	113382430	113382430	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	12	113382430	113382430	T	G	SNP	OAS3	ENST00000228928	human	ensembl	74_37	+1	known	missense	c.610	p.L204V	0.996	pfam_2-5-oligoAdlate_synth_1_dom2/C	pfam_2-5-oligoAdlate_synth_1_dom2/C,pfam_Nucleotidyltransferase,pfscan_2-5-oligoadenylate_synth_N	-	no_errors	OAS3	HGNC	ENSG00000111331				67	0	0	76	4	5
LHX5	0	genome.wustl.edu	37	12	113907091	113907091	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	12	113907091	113907091	C	T	SNP	LHX5	ENST00000261731	human	ensembl	74_37	-1	known	missense	c.233	p.R78H	1.000	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeobox_dom,pfscan_Znf_LIM,pfscan_Homeobox_dom	-	no_errors	LHX5	HGNC	ENSG00000089116				85	0	0	88	11	11.1111
TBX3	0	genome.wustl.edu	37	12	115120667	115120667	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	12	115120667	115120667	C	T	SNP	TBX3	ENST00000257566	human	ensembl	74_37	-1	known	nonsense	c.339	p.W113*	1.000	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box	pfam_TF_T-box,pfam_TBX,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX3	HGNC	ENSG00000135111				93	0	0	54	17	23.9437
WSB2	0	genome.wustl.edu	37	12	118474278	118474278	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	12	118474278	118474278	C	T	SNP	WSB2	ENST00000315436	human	ensembl	74_37	-1	known	missense	c.698	p.R233Q	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_SOCS_C,superfamily_WD40_repeat_dom,smart_WD40_repeat,smart_SOCS_C,pfscan_SOCS_C,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WSB2	HGNC	ENSG00000176871				102	0	0	62	34	35.4167
TAOK3	0	genome.wustl.edu	37	12	118682752	118682752	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	12	118682752	118682752	T	C	SNP	TAOK3	ENST00000392533	human	ensembl	74_37	-1	known	missense	c.139	p.S47G	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TAOK3	HGNC	ENSG00000135090				110	0	0	57	30	34.4828
GCN1L1	0	genome.wustl.edu	37	12	120589077	120589077	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	12	120589077	120589077	C	T	SNP	GCN1L1	ENST00000300648	human	ensembl	74_37	-1	known	missense	c.4181	p.R1394H	1.000	superfamily_ARM-type_fold	pfam_DUF3554,pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	GCN1L1	HGNC	ENSG00000089154				52	0	0	34	6	15
PXN	0	genome.wustl.edu	37	12	120660425	120660425	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	12	120660425	120660425	G	A	SNP	PXN	ENST00000267257	human	ensembl	74_37	-1	known	missense	c.622	p.R208W	0.999	prints_Paxillin	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM,prints_Paxillin	-	no_errors	PXN	HGNC	ENSG00000089159				12	0	0	6	2	25
ACADS	0	genome.wustl.edu	37	12	121176396	121176396	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	12	121176396	121176396	G	A	SNP	ACADS	ENST00000242592	human	ensembl	74_37	+1	known	missense	c.856	p.A286T	0.994	pfam_AcylCo_DH/oxidase_C,pfam_Acyl-CoA_DH_2_C,superfamily_AcylCo_DH/oxidase_C	pfam_AcylCo_DH/oxidase_C,pfam_AcylCoA_DH/ox_N,pfam_Acyl-CoA_DH_2_C,pfam_Acyl-CoA_Oxase/DH_cen-dom,superfamily_AcylCoA_DH/oxidase_NM_dom,superfamily_AcylCo_DH/oxidase_C	-	no_errors	ACADS	HGNC	ENSG00000122971				91	0	0	63	42	40
MMP17	0	genome.wustl.edu	37	12	132329917	132329917	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	12	132329917	132329917	G	A	SNP	MMP17	ENST00000360564	human	ensembl	74_37	+1	known	missense	c.1127	p.R376Q	1.000	pfam_Hemopexin-like_repeat,superfamily_Hemopexin-like_dom,smart_Hemopexin-like_repeat,pirsf_Pept_M10A_Metazoans	pfam_Pept_M10_metallopeptidase,pfam_Hemopexin-like_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin-like_repeat,pirsf_Pept_M10A_Metazoans,prints_Pept_M10A	-	no_errors	MMP17	HGNC	ENSG00000198598				25	0	0	25	3	10.7143
ANKLE2	0	genome.wustl.edu	37	12	133304695	133304695	+	Silent	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	12	133304695	133304695	G	A	SNP	ANKLE2	ENST00000357997	human	ensembl	74_37	-1	known	silent	c.2538	p.D846	0.000	NULL	pfam_LEM_dom,superfamily_LEM/LEM-like_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Ribosomal_L9/RNase_H1_N,pfscan_LEM_dom	-	no_errors	ANKLE2	HGNC	ENSG00000176915				166	0	0	123	56	31.2849
PTPRO	0	genome.wustl.edu	37	12	15636953	15636953	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	12	15636953	15636953	G	A	SNP	PTPRO	ENST00000281171	human	ensembl	74_37	+1	known	missense	c.121	p.V41I	0.805	superfamily_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRO	HGNC	ENSG00000151490				68	0	0	44	10	18.5185
SLCO1C1	0	genome.wustl.edu	37	12	20903795	20903795	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	12	20903795	20903795	C	T	SNP	SLCO1C1	ENST00000381552	human	ensembl	74_37	+1	known	missense	c.1985	p.T662I	0.000	NULL	pfam_OA_transporter,pfam_MFS,pfam_Kazal_dom,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	-	no_errors	SLCO1C1	HGNC	ENSG00000139155				58	0	0	27	12	30.7692
SLCO1B1	0	genome.wustl.edu	37	12	21325709	21325709	+	Silent	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	12	21325709	21325709	C	T	SNP	SLCO1B1	ENST00000256958	human	ensembl	74_37	+1	known	silent	c.210	p.D70	0.996	pfam_OA_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO1B1	HGNC	ENSG00000134538				23	0	0	14	3	17.6471
GYS2	0	genome.wustl.edu	37	12	21712082	21712082	+	Silent	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	12	21712082	21712082	G	A	SNP	GYS2	ENST00000261195	human	ensembl	74_37	-1	known	silent	c.1251	p.N417	0.998	pfam_Glycogen_synth	pfam_Glycogen_synth,pfam_Glyco_trans_1	-	no_errors	GYS2	HGNC	ENSG00000111713				36	0	0	16	3	15.7895
KRAS	0	genome.wustl.edu	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	12	25398284	25398284	C	T	SNP	KRAS	ENST00000256078	human	ensembl	74_37	-1	known	missense	c.35	p.G12D	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	KRAS	HGNC	ENSG00000133703				36	0	0	15	5	25
IQSEC3	0	genome.wustl.edu	37	12	274932	274932	+	Silent	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	12	274932	274932	G	A	SNP	IQSEC3	ENST00000326261	human	ensembl	74_37	+1	known	silent	c.2847	p.S949	0.895	NULL	pfam_Sec7_dom,superfamily_Sec7_dom,smart_Sec7_dom,pfscan_IQ_motif_EF-hand-BS,pfscan_Sec7_dom	-	no_errors	IQSEC3	HGNC	ENSG00000120645				41	0	0	41	16	28.0702
IPO8	0	genome.wustl.edu	37	12	30816463	30816463	+	Silent	SNP	A	A	G			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	12	30816463	30816463	A	G	SNP	IPO8	ENST00000256079	human	ensembl	74_37	-1	known	silent	c.1554	p.A518	0.816	superfamily_ARM-type_fold	pfam_Importin-beta_N,pfam_Cse1,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	IPO8	HGNC	ENSG00000133704				64	0	0	49	3	5.76923
TSPAN11	0	genome.wustl.edu	37	12	31135587	31135587	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	12	31135587	31135587	G	A	SNP	TSPAN11	ENST00000261177	human	ensembl	74_37	+1	known	missense	c.577	p.G193S	1.000	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	TSPAN11	HGNC	ENSG00000110900				16	0	0	6	4	40
DDX11	0	genome.wustl.edu	37	12	31247692	31247692	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	12	31247692	31247692	C	T	SNP	DDX11	ENST00000407793	human	ensembl	74_37	+1	known	missense	c.1418	p.T473M	0.948	tigrfam_DNA_helicase_DNA-repair_Rad3	pfam_DEAD_2,superfamily_P-loop_NTPase,smart_Helicase-like_DEXD_c2,smart_ATP-dep_Helicase_C,pfscan_Helic_SF1/SF2_ATP-bd_DinG/Rad3,tigrfam_DNA_helicase_DNA-repair_Rad3	-	no_errors	DDX11	HGNC	ENSG00000013573				25	0	0	21	5	19.2308
METTL20	0	genome.wustl.edu	37	12	31820818	31820818	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	12	31820818	31820818	G	A	SNP	METTL20	ENST00000357721	human	ensembl	74_37	+1	known	missense	c.683	p.S228N	0.825	NULL	pfam_Ribosomal-L11_MeTrfase_PrmA,pfam_Nicotinamide_N-MeTfrase-like	-	no_errors	METTL20	HGNC	ENSG00000139160				93	0	0	83	6	6.74157
PKP2	0	genome.wustl.edu	37	12	32974415	32974415	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	12	32974415	32974415	C	T	SNP	PKP2	ENST00000070846	human	ensembl	74_37	-1	known	missense	c.2020	p.V674M	0.959	superfamily_ARM-type_fold	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	PKP2	HGNC	ENSG00000057294				73	0	0	46	21	31.3433
C12orf5	0	genome.wustl.edu	37	12	4460522	4460522	+	Silent	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	12	4460522	4460522	C	T	SNP	C12orf5	ENST00000179259	human	ensembl	74_37	+1	known	silent	c.360	p.P120	0.000	pfam_His_Pase_superF_clade-1,smart_His_Pase_superF_clade-1	pfam_His_Pase_superF_clade-1,smart_His_Pase_superF_clade-1	-	no_errors	C12orf5	HGNC	ENSG00000078237				55	0	0	31	20	39.2157
CACNB3	0	genome.wustl.edu	37	12	49220259	49220259	+	Silent	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	12	49220259	49220259	G	A	SNP	CACNB3	ENST00000301050	human	ensembl	74_37	+1	known	silent	c.852	p.S284	0.002	pfam_GK/Ca_channel_bsu,superfamily_P-loop_NTPase,smart_GK/Ca_channel_bsu,prints_VDCC_L_bsu	pfam_GK/Ca_channel_bsu,pfam_VDCC_L_bsu,superfamily_P-loop_NTPase,superfamily_SH3_domain,smart_GK/Ca_channel_bsu,prints_VDCC_L_bsu,prints_VDCC_L_b3su	-	no_errors	CACNB3	HGNC	ENSG00000167535				39	0	0	14	10	41.6667
SMARCD1	0	genome.wustl.edu	37	12	50481152	50481152	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	12	50481152	50481152	C	T	SNP	SMARCD1	ENST00000394963	human	ensembl	74_37	+1	known	missense	c.538	p.R180W	1.000	NULL	pfam_SWIB_MDM2_domain,superfamily_SWIB_MDM2_domain,smart_SWIB_domain	-	no_errors	SMARCD1	HGNC	ENSG00000066117				239	0	0	146	10	6.41026
TMPRSS12	0	genome.wustl.edu	37	12	51279034	51279034	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	12	51279034	51279034	G	A	SNP	TMPRSS12	ENST00000398458	human	ensembl	74_37	+1	known	missense	c.658	p.A220T	0.000	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	TMPRSS12	HGNC	ENSG00000186452				63	0	0	16	10	38.4615
ACVR1B	0	genome.wustl.edu	37	12	52385715	52385715	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	12	52385715	52385715	C	T	SNP	ACVR1B	ENST00000257963	human	ensembl	74_37	+1	known	nonsense	c.1330	p.R444*	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_TGF_beta_rcpt_GS,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_TGF_beta_rcpt_GS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	ACVR1B	HGNC	ENSG00000135503				134	0	0	49	37	43.0233
SOAT2	0	genome.wustl.edu	37	12	53516883	53516883	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	12	53516883	53516883	C	T	SNP	SOAT2	ENST00000301466	human	ensembl	74_37	+1	known	nonsense	c.1255	p.R419*	0.926	pfam_MBOAT_fam	pfam_MBOAT_fam	-	no_errors	SOAT2	HGNC	ENSG00000167780				27	0	0	7	4	36.3636
HOXC12	0	genome.wustl.edu	37	12	54348881	54348881	+	Silent	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	12	54348881	54348881	G	A	SNP	HOXC12	ENST00000243103	human	ensembl	74_37	+1	known	silent	c.168	p.P56	0.991	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	HOXC12	HGNC	ENSG00000123407				22	0	0	16	8	33.3333
HOXC5	0	genome.wustl.edu	37	12	54428224	54428224	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	12	54428224	54428224	G	A	SNP	HOXC5	ENST00000312492	human	ensembl	74_37	+1	known	missense	c.617	p.R206H	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa,prints_Homeobox_antennapedia	-	no_errors	HOXC5	HGNC	ENSG00000172789				64	0	0	37	12	24.4898
ZNF385A	0	genome.wustl.edu	37	12	54764440	54764440	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	12	54764440	54764440	G	C	SNP	ZNF385A	ENST00000338010	human	ensembl	74_37	-1	known	missense	c.900	p.H300Q	1.000	NULL	pfam_Znf_C2H2_jaz,smart_Znf_U1,smart_Znf_C2H2-like	-	no_errors	ZNF385A	HGNC	ENSG00000161642				13	0	0	6	5	45.4545
ZNF385A	0	genome.wustl.edu	37	12	54764723	54764723	+	Silent	SNP	G	G	C			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	12	54764723	54764723	G	C	SNP	ZNF385A	ENST00000338010	human	ensembl	74_37	-1	known	silent	c.822	p.V274	1.000	pfam_Znf_C2H2_jaz,smart_Znf_U1,smart_Znf_C2H2-like	pfam_Znf_C2H2_jaz,smart_Znf_U1,smart_Znf_C2H2-like	-	no_errors	ZNF385A	HGNC	ENSG00000161642				130	0	0	35	30	46.1538
ZNF385A	0	genome.wustl.edu	37	12	54764782	54764782	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	12	54764782	54764782	G	A	SNP	ZNF385A	ENST00000338010	human	ensembl	74_37	-1	known	missense	c.763	p.P255S	1.000	NULL	pfam_Znf_C2H2_jaz,smart_Znf_U1,smart_Znf_C2H2-like	-	no_errors	ZNF385A	HGNC	ENSG00000161642				124	0	0	31	31	50
ZNF385A	0	genome.wustl.edu	37	12	54764831	54764831	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	12	54764831	54764831	G	C	SNP	ZNF385A	ENST00000338010	human	ensembl	74_37	-1	known	missense	c.714	p.I238M	1.000	NULL	pfam_Znf_C2H2_jaz,smart_Znf_U1,smart_Znf_C2H2-like	-	no_errors	ZNF385A	HGNC	ENSG00000161642				93	0	0	32	19	37.2549
ZNF385A	0	genome.wustl.edu	37	12	54765308	54765308	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	12	54765308	54765308	G	C	SNP	ZNF385A	ENST00000338010	human	ensembl	74_37	-1	known	missense	c.613	p.L205V	1.000	smart_Znf_U1,smart_Znf_C2H2-like	pfam_Znf_C2H2_jaz,smart_Znf_U1,smart_Znf_C2H2-like	-	no_errors	ZNF385A	HGNC	ENSG00000161642				144	0	0	41	32	43.8356
DCD	0	genome.wustl.edu	37	12	55038966	55038966	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	12	55038966	55038966	C	T	SNP	DCD	ENST00000293371	human	ensembl	74_37	-1	known	missense	c.280	p.V94M	0.000	NULL	NULL	-	no_errors	DCD	HGNC	ENSG00000161634				61	0	0	34	10	22.7273
LRP1	0	genome.wustl.edu	37	12	57569406	57569406	+	Silent	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	12	57569406	57569406	C	T	SNP	LRP1	ENST00000243077	human	ensembl	74_37	+1	known	silent	c.3711	p.C1237	0.852	smart_EG-like_dom	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1	HGNC	ENSG00000123384				75	0	0	71	18	20.2247
CHD4	0	genome.wustl.edu	37	12	6709750	6709750	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	12	6709750	6709750	C	T	SNP	CHD4	ENST00000309577	human	ensembl	74_37	-1	known	missense	c.1013	p.R338H	1.000	superfamily_Znf_FYVE_PHD	pfam_CHD_C2,pfam_DUF1086,pfam_SNF2_N,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,superfamily_Homeodomain-like,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD4	HGNC	ENSG00000111642				82	0	0	45	17	27.4194
SLC6A15	0	genome.wustl.edu	37	12	85279797	85279797	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	12	85279797	85279797	G	A	SNP	SLC6A15	ENST00000266682	human	ensembl	74_37	-1	known	missense	c.340	p.L114F	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_orphan	-	no_errors	SLC6A15	HGNC	ENSG00000072041				85	0	0	22	23	51.1111
A2ML1	0	genome.wustl.edu	37	12	9001489	9001489	+	Silent	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	12	9001489	9001489	G	A	SNP	A2ML1	ENST00000299698	human	ensembl	74_37	+1	known	silent	c.2007	p.T669	0.000	NULL	pfam_A2M_comp,pfam_Macroglobln_a2,pfam_A2M_N_2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_SV_autoAg,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd	-	no_errors	A2ML1	HGNC	ENSG00000166535				166	0	0	110	46	29.4872
DCN	0	genome.wustl.edu	37	12	91550892	91550892	+	Silent	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	12	91550892	91550892	G	A	SNP	DCN	ENST00000052754	human	ensembl	74_37	-1	known	silent	c.612	p.Y204	1.000	pirsf_SLRP_I_decor/aspor/byglycan	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,pirsf_SLRP_I_decor/aspor/byglycan	-	no_errors	DCN	HGNC	ENSG00000011465				112	0	0	82	11	11.828
METTL21C	0	genome.wustl.edu	37	13	103339401	103339401	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	13	103339401	103339401	C	A	SNP	METTL21C	ENST00000267273	human	ensembl	74_37	-1	known	missense	c.289	p.A97S	0.997	pfam_Nicotinamide_N-MeTfrase-like	pfam_Nicotinamide_N-MeTfrase-like	-	no_errors	METTL21C	HGNC	ENSG00000139780				74	0	0	32	14	30.4348
SLC10A2	0	genome.wustl.edu	37	13	103703660	103703660	+	Silent	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	13	103703660	103703660	C	T	SNP	SLC10A2	ENST00000245312	human	ensembl	74_37	-1	known	silent	c.708	p.A236	0.028	tigrfam_Bil_ac_transpt	pfam_BilAc/Na_symport,tigrfam_Bil_ac_transpt	-	no_errors	SLC10A2	HGNC	ENSG00000125255				124	0	0	94	32	25.3968
FAM155A	0	genome.wustl.edu	37	13	107822911	107822911	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	13	107822911	107822911	C	A	SNP	FAM155A	ENST00000375915	human	ensembl	74_37	-1	known	missense	c.1311	p.Q437H	0.998	NULL	NULL	-	no_errors	FAM155A	HGNC	ENSG00000204442				63	0	0	50	22	30.5556
MYO16	0	genome.wustl.edu	37	13	109661297	109661297	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	13	109661297	109661297	T	C	SNP	MYO16	ENST00000356711	human	ensembl	74_37	+1	known	missense	c.2429	p.L810P	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Ankyrin_rpt,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Myosin_head_motor_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO16	HGNC	ENSG00000041515				57	0	0	47	17	26.5625
C1QTNF9B	0	genome.wustl.edu	37	13	24465898	24465898	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	13	24465898	24465898	G	A	SNP	C1QTNF9B	ENST00000382137	human	ensembl	74_37	-1	known	missense	c.532	p.R178W	0.993	pfam_Collagen	pfam_C1q,pfam_Collagen,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	C1QTNF9B	HGNC	ENSG00000205863				50	0	0	40	7	14.8936
AMER2	0	genome.wustl.edu	37	13	25745468	25745468	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	13	25745468	25745468	G	A	SNP	AMER2	ENST00000515384	human	ensembl	74_37	-1	known	missense	c.290	p.P97L	0.173	NULL	pfam_Uncharacterised_FAM123	-	no_errors	AMER2	HGNC	ENSG00000165566				57	0	0	29	17	36.9565
FLT3	0	genome.wustl.edu	37	13	28597513	28597513	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	13	28597513	28597513	C	T	SNP	FLT3	ENST00000380982	human	ensembl	74_37	-1	known	missense	c.2392	p.G798R	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	FLT3	HGNC	ENSG00000122025				39	0	0	26	7	21.2121
N4BP2L2	0	genome.wustl.edu	37	13	33017425	33017425	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	13	33017425	33017425	G	A	SNP	N4BP2L2	ENST00000399396	human	ensembl	74_37	-1	known	nonsense	c.1249	p.Q417*	0.001	NULL	superfamily_P-loop_NTPase	-	no_errors	N4BP2L2	HGNC	ENSG00000244754				97	0	0	70	29	29.2929
STARD13	0	genome.wustl.edu	37	13	33684151	33684151	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	13	33684151	33684151	C	A	SNP	STARD13	ENST00000336934	human	ensembl	74_37	-1	known	missense	c.2906	p.R969L	1.000	pfam_START_lipid-bd_dom,smart_START_lipid-bd_dom,pfscan_START_lipid-bd_dom	pfam_START_lipid-bd_dom,pfam_RhoGAP_dom,pfam_SAM_2,superfamily_Rho_GTPase_activation_prot,superfamily_SAM/pointed,smart_RhoGAP_dom,smart_START_lipid-bd_dom,pfscan_START_lipid-bd_dom,pfscan_RhoGAP_dom	-	no_errors	STARD13	HGNC	ENSG00000133121				72	0	0	69	23	25
VWA8	0	genome.wustl.edu	37	13	42189137	42189137	+	Silent	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	13	42189137	42189137	G	A	SNP	VWA8	ENST00000379310	human	ensembl	74_37	-1	known	silent	c.4695	p.G1565	0.154	NULL	pfam_ATPase_dyneun-rel_AAA,pfam_VWF_A,superfamily_P-loop_NTPase,smart_AAA+_ATPase,smart_VWF_A,pfscan_VWF_A	-	no_errors	VWA8	HGNC	ENSG00000102763				64	0	0	60	23	27.7108
LRCH1	0	genome.wustl.edu	37	13	47315868	47315868	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	13	47315868	47315868	C	T	SNP	LRCH1	ENST00000389798	human	ensembl	74_37	+1	known	missense	c.2072	p.A691V	1.000	superfamily_CH-domain	pfam_Leu-rich_rpt,pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_Leu-rich_rpt_typical-subtyp,smart_CH-domain,pfscan_CH-domain	-	no_errors	LRCH1	HGNC	ENSG00000136141				466	2	0.42735	322	136	29.6943
PCDH8	0	genome.wustl.edu	37	13	53421242	53421242	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	13	53421242	53421242	C	T	SNP	PCDH8	ENST00000377942	human	ensembl	74_37	-1	known	missense	c.1330	p.A444T	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH8	HGNC	ENSG00000136099				8	0	0	8	3	27.2727
PCDH9	0	genome.wustl.edu	37	13	67801679	67801679	+	Silent	SNP	T	T	C			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	13	67801679	67801679	T	C	SNP	PCDH9	ENST00000377865	human	ensembl	74_37	-1	known	silent	c.894	p.A298	0.993	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH9	HGNC	ENSG00000184226				108	0	0	65	31	32.2917
EML1	0	genome.wustl.edu	37	14	100363543	100363543	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	14	100363543	100363543	G	A	SNP	EML1	ENST00000334192	human	ensembl	74_37	+1	known	missense	c.796	p.V266I	1.000	pfam_HELP,superfamily_Quinonprotein_ADH-like_supfam	pfam_HELP,pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like_supfam,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EML1	HGNC	ENSG00000066629				102	0	0	48	31	39.2405
SLC39A2	0	genome.wustl.edu	37	14	21469346	21469346	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	14	21469346	21469346	G	T	SNP	SLC39A2	ENST00000298681	human	ensembl	74_37	+1	known	missense	c.538	p.G180W	1.000	pfam_ZIP	pfam_ZIP	-	no_errors	SLC39A2	HGNC	ENSG00000165794				80	0	0	51	23	31.0811
HNRNPC	0	genome.wustl.edu	37	14	21681143	21681143	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	14	21681143	21681143	G	A	SNP	HNRNPC	ENST00000320084	human	ensembl	74_37	-1	known	missense	c.538	p.R180W	0.999	superfamily_Regulat_G_prot_signal_superfam,pirsf_hnRNP_C_Raly	pfam_RRM_dom,superfamily_Regulat_G_prot_signal_superfam,smart_RRM_dom,pirsf_hnRNP_C_Raly,pfscan_RRM_dom	-	no_errors	HNRNPC	HGNC	ENSG00000092199				201	0	0	156	53	25.3589
MYH6	0	genome.wustl.edu	37	14	23853917	23853917	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	14	23853917	23853917	T	C	SNP	MYH6	ENST00000356287	human	ensembl	74_37	-1	known	missense	c.5299	p.M1767V	1.000	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH6	HGNC	ENSG00000197616				93	0	0	74	11	12.9412
PSME1	0	genome.wustl.edu	37	14	24606965	24606965	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	14	24606965	24606965	T	G	SNP	PSME1	ENST00000382708	human	ensembl	74_37	+1	known	missense	c.349	p.L117V	0.913	pfam_Proteasome_activ_pa28_C,superfamily_Proteasome_activ_pa28	pfam_Proteasome_activ_pa28_C,pfam_Proteasome_activ_pa28_N,superfamily_Proteasome_activ_pa28	-	no_errors	PSME1	HGNC	ENSG00000092010				83	0	0	89	6	6.31579
FOXG1	0	genome.wustl.edu	37	14	29237784	29237784	+	Silent	SNP	C	C	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	14	29237784	29237784	C	A	SNP	FOXG1	ENST00000313071	human	ensembl	74_37	+1	known	silent	c.1299	p.S433	1.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXG1	HGNC	ENSG00000176165				57	0	0	28	11	28.2051
FAM179B	0	genome.wustl.edu	37	14	45432820	45432820	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	14	45432820	45432820	T	C	SNP	FAM179B	ENST00000361577	human	ensembl	74_37	+1	known	missense	c.1196	p.L399P	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	FAM179B	HGNC	ENSG00000198718				73	0	0	52	14	21.2121
DACT1	0	genome.wustl.edu	37	14	59112499	59112499	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	14	59112499	59112499	G	T	SNP	DACT1	ENST00000335867	human	ensembl	74_37	+1	known	missense	c.1158	p.Q386H	0.003	NULL	NULL	-	no_errors	DACT1	HGNC	ENSG00000165617				70	0	0	54	16	22.8571
SIX1	0	genome.wustl.edu	37	14	61115476	61115476	+	Silent	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	14	61115476	61115476	C	T	SNP	SIX1	ENST00000247182	human	ensembl	74_37	-1	known	silent	c.432	p.A144	0.972	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	SIX1	HGNC	ENSG00000126778				72	0	0	54	18	25
SYNE2	0	genome.wustl.edu	37	14	64465745	64465745	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	14	64465745	64465745	T	C	SNP	SYNE2	ENST00000358025	human	ensembl	74_37	+1	known	missense	c.3467	p.L1156P	0.978	NULL	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654				55	0	0	44	5	10.2041
SYNE2	0	genome.wustl.edu	37	14	64644169	64644169	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	14	64644169	64644169	G	A	SNP	SYNE2	ENST00000358025	human	ensembl	74_37	+1	known	missense	c.17524	p.E5842K	1.000	smart_Spectrin/alpha-actinin	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654				94	0	0	67	20	22.9885
SYNE2	0	genome.wustl.edu	37	14	64692078	64692078	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	14	64692078	64692078	G	A	SNP	SYNE2	ENST00000358025	human	ensembl	74_37	+1	known	missense	c.20558	p.R6853K	0.999	pfam_KASH,pfscan_KASH	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654				55	0	0	43	12	21.8182
SPTB	0	genome.wustl.edu	37	14	65252572	65252572	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	14	65252572	65252572	T	C	SNP	SPTB	ENST00000389722	human	ensembl	74_37	-1	known	missense	c.3659	p.N1220S	1.000	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_CAMSAP_CH,pfam_Pleckstrin_homology,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTB	HGNC	ENSG00000070182				194	0	0	155	53	25.4808
FUT8	0	genome.wustl.edu	37	14	66136109	66136109	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	14	66136109	66136109	G	A	SNP	FUT8	ENST00000360689	human	ensembl	74_37	+1	known	missense	c.746	p.R249H	1.000	pirsf_Alpha1_6FUT_euk	superfamily_SH3_domain,smart_SH3_domain,pirsf_Alpha1_6FUT_euk	-	no_errors	FUT8	HGNC	ENSG00000033170				75	0	0	57	22	27.8481
GPHN	0	genome.wustl.edu	37	14	67576930	67576930	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	14	67576930	67576930	C	T	SNP	GPHN	ENST00000478722	human	ensembl	74_37	+1	known	missense	c.1367	p.A456V	1.000	pfam_MoeA_linker/N,superfamily_MoeA_linker/N	pfam_Mopterin-bd_dom,pfam_MoeA_linker/N,pfam_MoeA_C_domain_IV,superfamily_MoeA_linker/N,superfamily_Mopterin-bd_dom,superfamily_MoeA_C_domain_IV,smart_Mopterin-bd_dom,tigrfam_Mo_cofactor_synthesis	-	no_errors	GPHN	HGNC	ENSG00000171723				204	0	0	120	61	33.7017
RGS6	0	genome.wustl.edu	37	14	72976872	72976872	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	14	72976872	72976872	A	G	SNP	RGS6	ENST00000553525	human	ensembl	74_37	+1	known	missense	c.976	p.S326G	1.000	superfamily_Regulat_G_prot_signal_superfam	pfam_RGS_dom,pfam_G-protein_gamma-like_dom,pfam_DEP_dom,superfamily_Regulat_G_prot_signal_superfam,superfamily_G-protein_gamma-like_dom,smart_DEP_dom,smart_G-protein_gamma-like_dom,smart_Regulat_G_prot_signal_superfam,pfscan_DEP_dom,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS6	HGNC	ENSG00000182732				146	0	0	101	16	13.6752
FLRT2	0	genome.wustl.edu	37	14	86089465	86089465	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	14	86089465	86089465	G	A	SNP	FLRT2	ENST00000330753	human	ensembl	74_37	+1	known	missense	c.1607	p.S536N	0.999	NULL	pfam_Leu-rich_rpt,pfam_Fibronectin_type3,pfam_LRR-contain_N,superfamily_Fibronectin_type3,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_Fibronectin_type3	-	no_errors	FLRT2	HGNC	ENSG00000185070				99	0	0	71	32	31.068
KCNK13	0	genome.wustl.edu	37	14	90651177	90651177	+	Silent	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	14	90651177	90651177	C	T	SNP	KCNK13	ENST00000282146	human	ensembl	74_37	+1	known	silent	c.1057	p.L353	0.733	NULL	pfam_2pore_dom_K_chnl_dom,prints_2pore_dom_K_chnl_THIK,prints_2pore_dom_K_chnl,prints_2pore_dom_K_chnl_TASK	-	no_errors	KCNK13	HGNC	ENSG00000152315				74	0	0	47	13	21.6667
SMEK1	0	genome.wustl.edu	37	14	91942165	91942165	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	14	91942165	91942165	A	T	SNP	SMEK1	ENST00000554943	human	ensembl	74_37	-1	known	missense	c.1256	p.I419K	1.000	superfamily_ARM-type_fold	pfam_DUF625,superfamily_ARM-type_fold	-	no_errors	SMEK1	HGNC	ENSG00000100796				45	0	0	23	10	30.303
TRIP11	0	genome.wustl.edu	37	14	92472038	92472038	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	14	92472038	92472038	T	C	SNP	TRIP11	ENST00000267622	human	ensembl	74_37	-1	known	missense	c.2282	p.H761R	0.961	NULL	superfamily_Ribosomal_L29,pfscan_GRIP	-	no_errors	TRIP11	HGNC	ENSG00000100815				205	0	0	138	28	16.8675
ITPK1	0	genome.wustl.edu	37	14	93424683	93424683	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	14	93424683	93424683	A	C	SNP	ITPK1	ENST00000267615	human	ensembl	74_37	-1	known	missense	c.533	p.L178R	1.000	pfam_Inositol_tetrakis-P_1-kinase	pfam_Inositol_tetrakis-P_1-kinase	-	no_errors	ITPK1	HGNC	ENSG00000100605				65	0	0	49	20	28.9855
FAM181A	0	genome.wustl.edu	37	14	94395175	94395175	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	14	94395175	94395175	A	G	SNP	FAM181A	ENST00000267594	human	ensembl	74_37	+1	known	missense	c.730	p.T244A	0.000	NULL	NULL	-	no_errors	FAM181A	HGNC	ENSG00000140067				29	0	0	19	13	40.625
SYNE3	0	genome.wustl.edu	37	14	95922000	95922000	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	14	95922000	95922000	G	A	SNP	SYNE3	ENST00000334258	human	ensembl	74_37	-1	known	missense	c.851	p.A284V	0.000	smart_Spectrin/alpha-actinin	pfam_KASH,pfam_Spectrin_repeat,superfamily_Retrov_capsid_C,smart_Spectrin/alpha-actinin,pfscan_KASH	-	no_errors	SYNE3	HGNC	ENSG00000176438				135	0	0	117	27	18.75
MEF2A	0	genome.wustl.edu	37	15	100250898	100250898	+	Silent	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	15	100250898	100250898	C	T	SNP	MEF2A	ENST00000338042	human	ensembl	74_37	+1	known	silent	c.1072	p.L358	1.000	NULL	pfam_TF_MADSbox,pfam_HJURP_C,superfamily_TF_MADSbox,smart_TF_MADSbox,pfscan_TF_MADSbox,prints_TF_MADSbox	-	no_errors	MEF2A	HGNC	ENSG00000068305				27	0	0	18	8	30.7692
SNORD116-19	0	genome.wustl.edu	37	15	25331742	25331742	+	RNA	SNP	G	G	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	15	25331742	25331742	G	T	SNP	SNORD116-19	ENST00000384729	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.019	-	-	-	no_errors	SNORD116-19	HGNC	ENSG00000207460				227	0	0	78	49	38.5827
HERC2	0	genome.wustl.edu	37	15	28408263	28408263	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	15	28408263	28408263	C	T	SNP	HERC2	ENST00000261609	human	ensembl	74_37	-1	known	missense	c.10723	p.G3575S	1.000	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5-like_heme/steroid-bd,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_RCC1/BLIP-II,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5-like_heme/steroid-bd,superfamily_UBA-like,superfamily_CUB_dom,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5-like_heme/steroid-bd,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731				115	0	0	71	27	27.551
HERC2	0	genome.wustl.edu	37	15	28437159	28437159	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	15	28437159	28437159	C	T	SNP	HERC2	ENST00000261609	human	ensembl	74_37	-1	known	missense	c.8399	p.R2800H	1.000	superfamily_Galactose-bd-like	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5-like_heme/steroid-bd,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_RCC1/BLIP-II,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5-like_heme/steroid-bd,superfamily_UBA-like,superfamily_CUB_dom,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5-like_heme/steroid-bd,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731				147	1	0.675676	116	53	31.3609
CHRNA7	0	genome.wustl.edu	37	15	32460269	32460269	+	Silent	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	15	32460269	32460269	C	T	SNP	CHRNA7	ENST00000454250	human	ensembl	74_37	+1	known	silent	c.1206	p.A402	0.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNA7	HGNC	ENSG00000175344				50	0	0	50	9	15.2542
MEIS2	0	genome.wustl.edu	37	15	37184485	37184485	+	Silent	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	15	37184485	37184485	G	A	SNP	MEIS2	ENST00000561208	human	ensembl	74_37	-1	known	silent	c.1323	p.H441	1.000	NULL	pfam_Homeobox_dom,pfam_Homeobox_KN_domain,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	MEIS2	HGNC	ENSG00000134138				418	2	0.47619	277	111	28.6082
SPRED1	0	genome.wustl.edu	37	15	38614539	38614539	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	15	38614539	38614539	C	T	SNP	SPRED1	ENST00000299084	human	ensembl	74_37	+1	known	missense	c.305	p.T102M	1.000	pfam_WH1/EVH1,smart_WH1/EVH1,pfscan_WH1/EVH1	pfam_Sprouty,pfam_WH1/EVH1,smart_WH1/EVH1,pfscan_WH1/EVH1	-	no_errors	SPRED1	HGNC	ENSG00000166068				135	0	0	79	19	19.3878
EIF2AK4	0	genome.wustl.edu	37	15	40322596	40322596	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	15	40322596	40322596	T	C	SNP	EIF2AK4	ENST00000263791	human	ensembl	74_37	+1	known	missense	c.4598	p.I1533T	0.036	pirsf_Ser/Thr_kinase_GCN2	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_RWD-domain,superfamily_Kinase-like_dom,superfamily_UBQ-conjugating_enzyme/RWD,superfamily_Anticodon-bd,smart_RWD-domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ser/Thr_kinase_GCN2,pfscan_RWD-domain,pfscan_Prot_kinase_dom	-	no_errors	EIF2AK4	HGNC	ENSG00000128829				33	0	0	22	6	21.4286
CASC5	0	genome.wustl.edu	37	15	40937929	40937929	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	15	40937929	40937929	G	T	SNP	CASC5	ENST00000346991	human	ensembl	74_37	+1	known	nonsense	c.6043	p.G2015*	1.000	NULL	NULL	-	no_errors	CASC5	HGNC	ENSG00000137812				39	0	0	20	4	16.6667
MAPKBP1	0	genome.wustl.edu	37	15	42106789	42106789	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	15	42106789	42106789	C	T	SNP	MAPKBP1	ENST00000456763	human	ensembl	74_37	+1	known	missense	c.1040	p.T347I	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	MAPKBP1	HGNC	ENSG00000137802				201	0	0	130	44	25.2874
SPTBN5	0	genome.wustl.edu	37	15	42150833	42150833	+	Silent	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	15	42150833	42150833	G	A	SNP	SPTBN5	ENST00000320955	human	ensembl	74_37	-1	known	silent	c.8193	p.D2731	0.017	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTBN5	HGNC	ENSG00000137877				19	0	0	21	4	16
ENSG00000258461	0	genome.wustl.edu	37	15	42694347	42694347	+	RNA	SNP	A	A	G			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	15	42694347	42694347	A	G	SNP	ENSG00000258461	ENST00000483208	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	RP11-164J13.1	Clone_based_vega_gene	ENSG00000258461				103	0	0	65	24	26.9663
UBR1	0	genome.wustl.edu	37	15	43317086	43317086	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	15	43317086	43317086	C	T	SNP	UBR1	ENST00000290650	human	ensembl	74_37	-1	known	missense	c.2680	p.V894I	0.997	NULL	pfam_ClpS_core,pfam_Znf_N-recognin,superfamily_Ribosomal_L7/12_C/ClpS-like,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR1	HGNC	ENSG00000159459				178	0	0	174	11	5.94595
GLDN	0	genome.wustl.edu	37	15	51634200	51634200	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	15	51634200	51634200	G	A	SNP	GLDN	ENST00000335449	human	ensembl	74_37	+1	known	missense	c.319	p.E107K	0.759	NULL	pfam_Olfac-like,pfam_Collagen,smart_Olfac-like,pfscan_Olfac-like	-	no_errors	GLDN	HGNC	ENSG00000186417				82	0	0	75	26	25.7426
WDR72	0	genome.wustl.edu	37	15	54025291	54025291	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	15	54025291	54025291	C	T	SNP	WDR72	ENST00000360509	human	ensembl	74_37	-1	known	missense	c.56	p.S19N	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR72	HGNC	ENSG00000166415				101	0	0	91	30	24.7934
UNC13C	0	genome.wustl.edu	37	15	54307129	54307129	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	15	54307129	54307129	G	A	SNP	UNC13C	ENST00000260323	human	ensembl	74_37	+1	known	missense	c.2029	p.D677N	1.000	NULL	pfam_Munc13_subgr_dom-2,pfam_Ca-dep_secretion_activator,pfam_C2_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_dom,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13C	HGNC	ENSG00000137766				72	0	0	41	27	39.7059
SLTM	0	genome.wustl.edu	37	15	59180672	59180672	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	15	59180672	59180672	G	A	SNP	SLTM	ENST00000380516	human	ensembl	74_37	-1	known	missense	c.2287	p.R763C	1.000	NULL	pfam_RRM_dom,pfam_SAP_dom,smart_SAP_dom,smart_RRM_dom,pfscan_SAP_dom,pfscan_RRM_dom	-	no_errors	SLTM	HGNC	ENSG00000137776				88	0	0	56	33	37.0787
GOLGA6B	0	genome.wustl.edu	37	15	72954989	72954989	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	15	72954989	72954989	G	T	SNP	GOLGA6B	ENST00000421285	human	ensembl	74_37	+1	known	missense	c.1244	p.R415M	0.914	NULL	NULL	-	no_errors	GOLGA6B	HGNC	ENSG00000215186				13	0	0	7	3	30
PML	0	genome.wustl.edu	37	15	74337044	74337044	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	15	74337044	74337044	C	T	SNP	PML	ENST00000268058	human	ensembl	74_37	+1	known	nonsense	c.2344	p.Q782*	1.000	NULL	pfam_DUF3583,pfam_Znf_B-box,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	PML	HGNC	ENSG00000140464				34	0	0	26	4	13.3333
DNAJA4	0	genome.wustl.edu	37	15	78568023	78568023	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	15	78568023	78568023	C	T	SNP	DNAJA4	ENST00000394855	human	ensembl	74_37	+1	known	missense	c.917	p.T306M	0.998	pfam_DnaJ_C,superfamily_HSP40/DnaJ_pept-bd	pfam_DnaJ_domain,pfam_DnaJ_C,pfam_HSP_DnaJ_Cys-rich_dom,superfamily_DnaJ_domain,superfamily_HSP40/DnaJ_pept-bd,superfamily_HSP_DnaJ_Cys-rich_dom,smart_DnaJ_domain,pfscan_DnaJ_domain,pfscan_HSP_DnaJ_Cys-rich_dom,prints_DnaJ_domain	-	no_errors	DNAJA4	HGNC	ENSG00000140403				33	0	0	22	7	24.1379
C15orf37	0	genome.wustl.edu	37	15	80215330	80215330	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	15	80215330	80215330	C	A	SNP	C15orf37	ENST00000560255	human	ensembl	74_37	+1	known	missense	c.215	p.T72N	0.520	NULL	NULL	-	no_errors	C15orf37	HGNC	ENSG00000259642				44	0	0	40	10	20
KIAA1199	0	genome.wustl.edu	37	15	81234667	81234667	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	15	81234667	81234667	G	A	SNP	KIAA1199	ENST00000220244	human	ensembl	74_37	+1	known	missense	c.3688	p.A1230T	0.959	NULL	pfam_G8_domain,superfamily_Pectin_lyase_fold/virulence	-	no_errors	KIAA1199	HGNC	ENSG00000103888				58	0	0	44	16	26.6667
TMC3	0	genome.wustl.edu	37	15	81627235	81627235	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	15	81627235	81627235	G	A	SNP	TMC3	ENST00000359440	human	ensembl	74_37	-1	known	missense	c.2285	p.S762L	0.013	NULL	pfam_TMC	-	no_errors	TMC3	HGNC	ENSG00000188869				71	0	0	56	12	17.6471
DET1	0	genome.wustl.edu	37	15	89074847	89074847	+	Silent	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	15	89074847	89074847	G	A	SNP	DET1	ENST00000444300	human	ensembl	74_37	-1	known	silent	c.123	p.G41	1.000	NULL	pfam_De-etiolated_protein_1_Det1	-	no_errors	DET1	HGNC	ENSG00000140543				140	0	0	111	42	27.451
IQGAP1	0	genome.wustl.edu	37	15	91040462	91040462	+	Splice_Site	SNP	A	A	G			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	15	91040462	91040462	A	G	SNP	IQGAP1	ENST00000268182	human	ensembl	74_37	+1	known	splice_site	c.4752-2	e37-2	1.000	-	-	-	no_errors	IQGAP1	HGNC	ENSG00000140575				38	0	0	19	3	13.6364
MCTP2	0	genome.wustl.edu	37	15	94901733	94901733	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	15	94901733	94901733	C	T	SNP	MCTP2	ENST00000357742	human	ensembl	74_37	+1	known	missense	c.1193	p.P398L	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_C2_dom,pfam_PRibTrfase_C,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	MCTP2	HGNC	ENSG00000140563				67	0	0	66	6	8.33333
CPPED1	0	genome.wustl.edu	37	16	12798506	12798506	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	16	12798506	12798506	C	A	SNP	CPPED1	ENST00000381774	human	ensembl	74_37	-1	known	missense	c.690	p.K230N	0.045	pfam_PEstase_dom	pfam_PEstase_dom	-	no_errors	CPPED1	HGNC	ENSG00000103381				115	0	0	85	36	29.7521
NPIPP1	0	genome.wustl.edu	37	16	15204394	15204394	+	RNA	SNP	T	T	C			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	16	15204394	15204394	T	C	SNP	NPIPP1	ENST00000448011	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	NPIPP1	HGNC	ENSG00000188599				67	0	0	54	9	14.2857
MEIOB	0	genome.wustl.edu	37	16	1889367	1889367	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	16	1889367	1889367	A	C	SNP	MEIOB	ENST00000325962	human	ensembl	74_37	-1	known	missense	c.1107	p.F369L	0.000	superfamily_NA-bd_OB-fold	superfamily_NA-bd_OB-fold	-	no_errors	MEIOB	HGNC	ENSG00000162039				41	0	0	33	5	13.1579
PKD1	0	genome.wustl.edu	37	16	2142501	2142501	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	16	2142501	2142501	C	T	SNP	PKD1	ENST00000262304	human	ensembl	74_37	-1	known	missense	c.11249	p.R3750Q	1.000	pfam_PKD1_2_channel	pfam_PKD_dom,pfam_PKD1_2_channel,pfam_PKD/REJ-like,pfam_PLAT/LH2_dom,pfam_C-type_lectin,pfam_WSC_carb-bd,pfam_GPS_dom,superfamily_C-type_lectin_fold,superfamily_Lipase_LipOase,superfamily_PKD_dom,superfamily_Fe_hydrogenase,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_WSC_carb-bd_subgr,smart_PKD/Chitinase_dom,smart_C-type_lectin,smart_GPS_dom,smart_PLAT/LH2_dom,prints_PKD_1,pfscan_GPS_dom,pfscan_C-type_lectin,pfscan_PKD_dom,pfscan_PLAT/LH2_dom,pfscan_REJ-like,pfscan_WSC_carb-bd,tigrfam_Polycystin_cat	-	no_errors	PKD1	HGNC	ENSG00000008710				33	0	0	29	2	6.45161
CDR2	0	genome.wustl.edu	37	16	22358554	22358554	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	16	22358554	22358554	T	G	SNP	CDR2	ENST00000268383	human	ensembl	74_37	-1	known	missense	c.1097	p.K366T	0.856	NULL	NULL	-	no_errors	CDR2	HGNC	ENSG00000140743				74	0	0	65	17	20.7317
E4F1	0	genome.wustl.edu	37	16	2285460	2285460	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	16	2285460	2285460	C	T	SNP	E4F1	ENST00000301727	human	ensembl	74_37	+1	known	nonsense	c.2242	p.Q748*	0.992	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	E4F1	HGNC	ENSG00000167967				20	0	0	15	7	31.8182
HS3ST4	0	genome.wustl.edu	37	16	26146979	26146979	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	16	26146979	26146979	A	G	SNP	HS3ST4	ENST00000331351	human	ensembl	74_37	+1	known	missense	c.781	p.T261A	1.000	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	HS3ST4	HGNC	ENSG00000182601				60	0	0	30	11	26.8293
SPNS1	0	genome.wustl.edu	37	16	28993369	28993369	+	Silent	SNP	C	C	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	16	28993369	28993369	C	A	SNP	SPNS1	ENST00000311008	human	ensembl	74_37	+1	known	silent	c.957	p.S319	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SPNS1	HGNC	ENSG00000169682				19	0	0	14	5	26.3158
MAZ	0	genome.wustl.edu	37	16	29821503	29821503	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	16	29821503	29821503	C	T	SNP	MAZ	ENST00000322945	human	ensembl	74_37	+1	known	missense	c.1385	p.A462V	0.997	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	MAZ	HGNC	ENSG00000103495				9	0	0	7	5	41.6667
PRRT2	0	genome.wustl.edu	37	16	29825015	29825015	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	16	29825015	29825015	G	C	SNP	PRRT2	ENST00000567659	human	ensembl	74_37	+1	known	missense	c.640	p.A214P	1.000	NULL	pfam_CD225/Dispanin_fam	-	no_errors	PRRT2	HGNC	ENSG00000167371				19	0	0	15	6	28.5714
CORO1A	0	genome.wustl.edu	37	16	30198745	30198745	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	16	30198745	30198745	G	A	SNP	CORO1A	ENST00000219150	human	ensembl	74_37	+1	known	missense	c.679	p.V227M	0.735	NULL	pfam_DUF1900,pfam_DUF1899,pfam_WD40_repeat,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CORO1A	HGNC	ENSG00000102879				51	0	0	35	15	30
ZNF689	0	genome.wustl.edu	37	16	30616501	30616501	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	16	30616501	30616501	C	T	SNP	ZNF689	ENST00000287461	human	ensembl	74_37	-1	known	missense	c.587	p.R196Q	0.975	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF689	HGNC	ENSG00000156853				58	0	0	38	16	29.6296
RNF40	0	genome.wustl.edu	37	16	30777494	30777494	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	16	30777494	30777494	T	A	SNP	RNF40	ENST00000324685	human	ensembl	74_37	+1	known	missense	c.1004	p.L335Q	1.000	NULL	smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF40	HGNC	ENSG00000103549				89	0	0	47	30	38.961
ZNF629	0	genome.wustl.edu	37	16	30794713	30794713	+	Silent	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	16	30794713	30794713	G	A	SNP	ZNF629	ENST00000262525	human	ensembl	74_37	-1	known	silent	c.936	p.H312	0.986	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF629	HGNC	ENSG00000102870				91	0	0	86	5	5.49451
ZNF629	0	genome.wustl.edu	37	16	30795016	30795016	+	Silent	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	16	30795016	30795016	G	A	SNP	ZNF629	ENST00000262525	human	ensembl	74_37	-1	known	silent	c.633	p.C211	0.990	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF629	HGNC	ENSG00000102870				43	0	0	35	8	18.6047
ZNF423	0	genome.wustl.edu	37	16	49670324	49670324	+	Silent	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	16	49670324	49670324	C	T	SNP	ZNF423	ENST00000262383	human	ensembl	74_37	-1	known	silent	c.2739	p.P913	0.008	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF423	HGNC	ENSG00000102935				80	0	0	43	26	37.6812
ADCY7	0	genome.wustl.edu	37	16	50338342	50338342	+	Silent	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	16	50338342	50338342	G	A	SNP	ADCY7	ENST00000254235	human	ensembl	74_37	+1	known	silent	c.1440	p.A480	0.513	NULL	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY7	HGNC	ENSG00000121281				71	0	0	40	7	14.8936
SNX20	0	genome.wustl.edu	37	16	50711346	50711346	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	16	50711346	50711346	C	T	SNP	SNX20	ENST00000330943	human	ensembl	74_37	-1	known	missense	c.92	p.G31D	0.008	NULL	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	SNX20	HGNC	ENSG00000167208				99	0	0	45	13	22.4138
GPR56	0	genome.wustl.edu	37	16	57690467	57690467	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	16	57690467	57690467	G	A	SNP	GPR56	ENST00000379696	human	ensembl	74_37	+1	known	missense	c.1105	p.V369I	0.000	pfam_GPS_dom,smart_GPS_dom,pfscan_GPS_dom	pfam_GPCR_2_secretin-like,pfam_GPS_dom,smart_GPS_dom,prints_GPCR_2_orphan_rcpt_GPR56,prints_GPCR_2_secretin-like,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR56	HGNC	ENSG00000205336				176	0	0	73	48	39.6694
GFOD2	0	genome.wustl.edu	37	16	67709273	67709273	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	16	67709273	67709273	G	A	SNP	GFOD2	ENST00000268797	human	ensembl	74_37	-1	known	missense	c.943	p.R315C	1.000	NULL	pfam_Oxidoreductase_N	-	no_errors	GFOD2	HGNC	ENSG00000141098				89	0	0	79	8	9.1954
COG4	0	genome.wustl.edu	37	16	70542363	70542363	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	16	70542363	70542363	C	T	SNP	COG4	ENST00000323786	human	ensembl	74_37	-1	known	missense	c.1007	p.R336Q	1.000	pfam_COG_su4,smart_COG_su4	pfam_COG_su4,smart_COG_su4	-	no_errors	COG4	HGNC	ENSG00000103051				92	0	0	68	13	16.0494
HYDIN	0	genome.wustl.edu	37	16	70972545	70972545	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	16	70972545	70972545	G	A	SNP	HYDIN	ENST00000393567	human	ensembl	74_37	-1	putative	nonsense	c.6967	p.Q2323*	0.096	NULL	superfamily_P-loop_NTPase,superfamily_PapD-like	-	no_errors	HYDIN	HGNC	ENSG00000157423				18	0	0	11	4	26.6667
HYDIN	0	genome.wustl.edu	37	16	71054191	71054191	+	Silent	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	16	71054191	71054191	G	A	SNP	HYDIN	ENST00000448089	human	ensembl	74_37	-1	known	silent	c.3072	p.Y1024	0.933	NULL	superfamily_PapD-like	-	no_errors	HYDIN	HGNC	ENSG00000157423				58	0	0	24	13	35.1351
CALB2	0	genome.wustl.edu	37	16	71423676	71423676	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	16	71423676	71423676	A	G	SNP	CALB2	ENST00000302628	human	ensembl	74_37	+1	known	missense	c.724	p.N242D	0.897	NULL	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	CALB2	HGNC	ENSG00000172137				194	0	0	136	67	33.0049
RHOT2	0	genome.wustl.edu	37	16	720944	720944	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	16	720944	720944	C	T	SNP	RHOT2	ENST00000315082	human	ensembl	74_37	+1	known	missense	c.692	p.T231M	0.994	pirsf_Rho_GTPase_Mt,pfam_EF_hand_assoc_2	pirsf_Rho_GTPase_Mt,pfam_EF_hand_assoc_2,pfam_MIRO-like,pfam_EF_hand_assoc_1,pfam_Small_GTPase,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,pfscan_EF_hand_dom	-	no_errors	RHOT2	HGNC	ENSG00000140983				37	0	0	26	6	18.75
PMFBP1	0	genome.wustl.edu	37	16	72184645	72184645	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	16	72184645	72184645	C	A	SNP	PMFBP1	ENST00000537465	human	ensembl	74_37	-1	known	missense	c.498	p.L166F	1.000	NULL	NULL	-	no_errors	PMFBP1	HGNC	ENSG00000118557				101	0	0	95	5	5
RBFOX1	0	genome.wustl.edu	37	16	7645563	7645563	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	16	7645563	7645563	G	A	SNP	RBFOX1	ENST00000547372	human	ensembl	74_37	+1	known	missense	c.610	p.V204I	1.000	pfam_RRM_dom,smart_RRM_dom,pirsf_RNA-bd_Fox-1,pfscan_RRM_dom	pfam_Fox-1_C_dom,pfam_RRM_dom,smart_RRM_dom,pirsf_RNA-bd_Fox-1,pfscan_RRM_dom	-	no_errors	RBFOX1	HGNC	ENSG00000078328				119	0	0	98	42	30
CCDC78	0	genome.wustl.edu	37	16	773012	773012	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	16	773012	773012	T	C	SNP	CCDC78	ENST00000293889	human	ensembl	74_37	-1	known	missense	c.1207	p.N403D	0.986	NULL	NULL	-	no_errors	CCDC78	HGNC	ENSG00000162004				63	0	0	38	16	29.6296
ADAMTS18	0	genome.wustl.edu	37	16	77369762	77369762	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	16	77369762	77369762	C	T	SNP	ADAMTS18	ENST00000282849	human	ensembl	74_37	-1	known	missense	c.1750	p.G584R	1.000	NULL	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS18	HGNC	ENSG00000140873				187	0	0	78	62	44.2857
KCNG4	0	genome.wustl.edu	37	16	84270710	84270710	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	16	84270710	84270710	C	T	SNP	KCNG4	ENST00000308251	human	ensembl	74_37	-1	known	missense	c.382	p.A128T	1.000	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,prints_K_chnl,prints_K_chnl_volt-dep_Kv9	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,prints_K_chnl,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCNG4	HGNC	ENSG00000168418				41	0	0	27	5	15.625
ZFPM1	0	genome.wustl.edu	37	16	88600773	88600773	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	16	88600773	88600773	C	T	SNP	ZFPM1	ENST00000319555	human	ensembl	74_37	+1	known	missense	c.2407	p.R803C	0.085	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFPM1	HGNC	ENSG00000179588				11	0	0	7	4	36.3636
CBFA2T3	0	genome.wustl.edu	37	16	88945788	88945788	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	16	88945788	88945788	C	A	SNP	CBFA2T3	ENST00000268679	human	ensembl	74_37	-1	known	nonsense	c.1552	p.E518*	1.000	prints_ETO	pfam_NHR2,pfam_TAFH_NHR1,pfam_Znf_MYND,smart_TAFH_NHR1,pfscan_TAFH_NHR1,pfscan_Znf_MYND,prints_ETO,prints_MTG16	-	no_errors	CBFA2T3	HGNC	ENSG00000129993				41	0	0	36	14	28
MYH13	0	genome.wustl.edu	37	17	10219039	10219039	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	17	10219039	10219039	G	T	SNP	MYH13	ENST00000252172	human	ensembl	74_37	-1	known	missense	c.3955	p.L1319I	0.998	pfam_Myosin_tail,superfamily_Prefoldin	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH13	HGNC	ENSG00000006788				23	0	0	24	4	14.2857
TRPV2	0	genome.wustl.edu	37	17	16330184	16330184	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	17	16330184	16330184	T	C	SNP	TRPV2	ENST00000338560	human	ensembl	74_37	+1	known	missense	c.1244	p.L415P	1.000	prints_TRPV1-4_channel,tigrfam_TRP_channel	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_TRPV1-4_channel,tigrfam_TRP_channel	-	no_errors	TRPV2	HGNC	ENSG00000187688				66	0	0	46	20	30.303
TNFRSF13B	0	genome.wustl.edu	37	17	16843774	16843774	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	17	16843774	16843774	G	A	SNP	TNFRSF13B	ENST00000261652	human	ensembl	74_37	-1	known	missense	c.497	p.T166M	0.767	NULL	pfam_TACI_Cys-rich-dom,prints_TNFR_13B	-	no_errors	TNFRSF13B	HGNC	ENSG00000240505				39	0	0	26	14	35
RAI1	0	genome.wustl.edu	37	17	17698668	17698668	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	17	17698668	17698668	G	T	SNP	RAI1	ENST00000353383	human	ensembl	74_37	+1	known	missense	c.2406	p.K802N	0.959	NULL	smart_Znf_PHD	-	no_errors	RAI1	HGNC	ENSG00000108557				20	0	0	14	8	36.3636
FLII	0	genome.wustl.edu	37	17	18152659	18152659	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	17	18152659	18152659	C	G	SNP	FLII	ENST00000327031	human	ensembl	74_37	-1	known	missense	c.1840	p.D614H	1.000	NULL	pfam_Gelsolin_dom,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Villin/Gelsolin,prints_Villin/Gelsolin	-	no_errors	FLII	HGNC	ENSG00000177731				57	0	0	54	4	6.89655
USP32P2	0	genome.wustl.edu	37	17	18416689	18416689	+	RNA	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	17	18416689	18416689	C	T	SNP	USP32P2	ENST00000412260	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	USP32P2	HGNC	ENSG00000233327				38	0	0	10	29	74.359
RNF112	0	genome.wustl.edu	37	17	19318422	19318422	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	17	19318422	19318422	G	A	SNP	RNF112	ENST00000461366	human	ensembl	74_37	+1	novel	missense	c.1198	p.A400T	0.935	NULL	pfam_Guanylate-bd_N,superfamily_P-loop_NTPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF112	HGNC	ENSG00000128482				32	0	0	10	10	50
SPECC1	0	genome.wustl.edu	37	17	20109083	20109083	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	17	20109083	20109083	C	T	SNP	SPECC1	ENST00000261503	human	ensembl	74_37	+1	known	missense	c.1721	p.T574M	0.000	NULL	pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	SPECC1	HGNC	ENSG00000128487				62	0	0	48	15	23.8095
LOC440416	0	genome.wustl.edu	37	17	20806031	20806031	+	RNA	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	17	20806031	20806031	G	A	SNP	LOC440416	ENST00000577537	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.010	-	-	-	no_errors	RP11-344E13.3	Clone_based_vega_gene	ENSG00000233098				9	0	0	7	7	50
KCNJ12	0	genome.wustl.edu	37	17	21318767	21318767	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	17	21318767	21318767	C	T	SNP	KCNJ12	ENST00000331718	human	ensembl	74_37	+1	known	missense	c.113	p.T38M	0.999	pfam_K_chnl_inward-rec_Kir_N,pirsf_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir,pfam_K_chnl_inward-rec_Kir_N,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir2.2	-	no_errors	KCNJ12	HGNC	ENSG00000184185				56	0	0	58	9	13.4328
SLC13A2	0	genome.wustl.edu	37	17	26822686	26822686	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	17	26822686	26822686	C	T	SNP	SLC13A2	ENST00000444914	human	ensembl	74_37	+1	known	missense	c.1469	p.S490L	1.000	pfam_Na/sul_symport,pfam_Cit_transptr-like_dom	pfam_Na/sul_symport,pfam_Cit_transptr-like_dom	-	no_errors	SLC13A2	HGNC	ENSG00000007216				95	0	0	64	30	31.9149
ABHD15	0	genome.wustl.edu	37	17	27893168	27893168	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	17	27893168	27893168	C	T	SNP	ABHD15	ENST00000307201	human	ensembl	74_37	-1	known	missense	c.817	p.E273K	1.000	pirsf_AB-Hydro_YheT	pirsf_AB-Hydro_YheT	-	no_errors	ABHD15	HGNC	ENSG00000168792				52	0	0	23	11	32.3529
ATAD5	0	genome.wustl.edu	37	17	29167732	29167732	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	17	29167732	29167732	C	T	SNP	ATAD5	ENST00000321990	human	ensembl	74_37	+1	known	missense	c.2174	p.A725V	0.000	NULL	pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	ATAD5	HGNC	ENSG00000176208				123	0	0	58	29	33.3333
ATAD5	0	genome.wustl.edu	37	17	29220338	29220338	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	17	29220338	29220338	G	A	SNP	ATAD5	ENST00000321990	human	ensembl	74_37	+1	known	nonsense	c.4467	p.W1489*	1.000	NULL	pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	ATAD5	HGNC	ENSG00000176208				238	0	0	108	48	30.7692
RHBDL3	0	genome.wustl.edu	37	17	30615897	30615897	+	Silent	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	17	30615897	30615897	G	A	SNP	RHBDL3	ENST00000269051	human	ensembl	74_37	+1	known	silent	c.381	p.K127	0.996	pirsf_Peptidase_S54_rhomboid_met	pfam_Peptidase_S54_rhomboid_dom,pirsf_Peptidase_S54_rhomboid_met,pfscan_EF_hand_dom	-	no_errors	RHBDL3	HGNC	ENSG00000141314				42	0	0	21	9	30
ZNF207	0	genome.wustl.edu	37	17	30696741	30696741	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	17	30696741	30696741	T	C	SNP	ZNF207	ENST00000394670	human	ensembl	74_37	+1	known	missense	c.1448	p.M483T	1.000	NULL	smart_Znf_C2H2-like	-	no_errors	ZNF207	HGNC	ENSG00000010244				62	0	0	49	16	24.6154
ATP6V0A1	0	genome.wustl.edu	37	17	40618475	40618475	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	17	40618475	40618475	G	A	SNP	ATP6V0A1	ENST00000264649	human	ensembl	74_37	+1	known	missense	c.146	p.R49Q	0.999	pfam_V-ATPase_116kDa_su	pfam_V-ATPase_116kDa_su	-	no_errors	ATP6V0A1	HGNC	ENSG00000033627				73	0	0	48	3	5.88235
NAGLU	0	genome.wustl.edu	37	17	40690415	40690415	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	17	40690415	40690415	C	T	SNP	NAGLU	ENST00000225927	human	ensembl	74_37	+1	known	missense	c.590	p.A197V	1.000	pfam_NAGLU_tim-barrel,superfamily_Glycoside_hydrolase_SF	pfam_NAGLU_tim-barrel,superfamily_Glycoside_hydrolase_SF	-	no_errors	NAGLU	HGNC	ENSG00000108784				156	0	0	107	48	30.9677
BECN1	0	genome.wustl.edu	37	17	40966560	40966560	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	17	40966560	40966560	A	G	SNP	BECN1	ENST00000361523	human	ensembl	74_37	-1	known	missense	c.962	p.M321T	1.000	pfam_Beclin_fam,superfamily_Translin	pfam_Beclin_fam,superfamily_Translin	-	no_errors	BECN1	HGNC	ENSG00000126581				109	0	0	88	32	26.6667
AOC4P	0	genome.wustl.edu	37	17	41026151	41026151	+	RNA	SNP	C	C	G			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	17	41026151	41026151	C	G	SNP	AOC4P	ENST00000570207	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	AOC4P	HGNC	ENSG00000260105				171	0	0	115	64	35.7542
AOC4P	0	genome.wustl.edu	37	17	41026250	41026250	+	RNA	SNP	C	C	G			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	17	41026250	41026250	C	G	SNP	AOC4P	ENST00000570207	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.975	-	-	-	no_errors	AOC4P	HGNC	ENSG00000260105				49	0	0	33	14	29.7872
TMEM106A	0	genome.wustl.edu	37	17	41368528	41368528	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	17	41368528	41368528	G	A	SNP	TMEM106A	ENST00000331615	human	ensembl	74_37	+1	known	missense	c.490	p.E164K	0.954	pfam_DUF1356_TMEM106	pfam_DUF1356_TMEM106	-	no_errors	TMEM106A	HGNC	ENSG00000184988				270	0	0	198	89	31.0105
MAPT	0	genome.wustl.edu	37	17	44101486	44101486	+	Silent	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	17	44101486	44101486	C	T	SNP	MAPT	ENST00000344290	human	ensembl	74_37	+1	known	silent	c.2280	p.L760	0.104	NULL	pfam_MAP_tubulin-bd_rpt,prints_Tau	-	no_errors	MAPT	HGNC	ENSG00000186868				120	0	0	93	34	26.7717
MYBBP1A	0	genome.wustl.edu	37	17	4455891	4455891	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	17	4455891	4455891	G	A	SNP	MYBBP1A	ENST00000381556	human	ensembl	74_37	-1	known	missense	c.592	p.P198S	0.999	pfam_DNA_pol_V,superfamily_ARM-type_fold	pfam_DNA_pol_V,superfamily_ARM-type_fold	-	no_errors	MYBBP1A	HGNC	ENSG00000132382				43	0	0	31	10	24.3902
OR4D2	0	genome.wustl.edu	37	17	56247325	56247325	+	Silent	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	17	56247325	56247325	C	T	SNP	OR4D2	ENST00000545221	human	ensembl	74_37	+1	known	silent	c.309	p.F103	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4D2	HGNC	ENSG00000255713				98	0	0	54	22	28.9474
HSF5	0	genome.wustl.edu	37	17	56557589	56557589	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	17	56557589	56557589	C	T	SNP	HSF5	ENST00000323777	human	ensembl	74_37	-1	known	missense	c.590	p.R197Q	1.000	NULL	pfam_HSF_DNA-bd,smart_HSF_DNA-bd	-	no_errors	HSF5	HGNC	ENSG00000176160				78	0	0	53	23	30.2632
WSCD1	0	genome.wustl.edu	37	17	6023799	6023799	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	17	6023799	6023799	C	T	SNP	WSCD1	ENST00000317744	human	ensembl	74_37	+1	known	missense	c.1546	p.R516W	1.000	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	pfam_WSC_carb-bd,pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,smart_WSC_carb-bd_subgr,pfscan_WSC_carb-bd	-	no_errors	WSCD1	HGNC	ENSG00000179314				54	0	0	47	17	26.5625
SMARCD2	0	genome.wustl.edu	37	17	61911083	61911083	+	Splice_Site	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	17	61911083	61911083	C	T	SNP	SMARCD2	ENST00000448276	human	ensembl	74_37	-1	known	splice_site	c.1182-1	e10-1	1.000	-	-	-	no_errors	SMARCD2	HGNC	ENSG00000108604				75	0	0	45	20	30.7692
SCN4A	0	genome.wustl.edu	37	17	62045681	62045681	+	Silent	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	17	62045681	62045681	C	T	SNP	SCN4A	ENST00000435607	human	ensembl	74_37	-1	known	silent	c.738	p.S246	0.248	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_PKD1_2_channel,pfscan_IQ_motif_EF-hand-BS,prints_Na_channel_a4su,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN4A	HGNC	ENSG00000007314				103	0	0	67	26	27.957
ERN1	0	genome.wustl.edu	37	17	62144207	62144207	+	Silent	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	17	62144207	62144207	G	A	SNP	ERN1	ENST00000433197	human	ensembl	74_37	-1	known	silent	c.666	p.Y222	0.738	superfamily_Quinonprotein_ADH-like_supfam	pfam_Prot_kinase_dom,pfam_KEN_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Quinonprotein_ADH-like_supfam,smart_PQQ_beta_propeller_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PUG-dom,pfscan_Prot_kinase_dom	-	no_errors	ERN1	HGNC	ENSG00000178607				28	0	0	22	13	37.1429
PLEKHM1P	0	genome.wustl.edu	37	17	62796707	62796707	+	RNA	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	17	62796707	62796707	C	T	SNP	PLEKHM1P	ENST00000578036	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.997	-	-	-	no_errors	PLEKHM1P	HGNC	ENSG00000214176				46	0	0	38	15	28.3019
CEP112	0	genome.wustl.edu	37	17	64026051	64026051	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	17	64026051	64026051	C	T	SNP	CEP112	ENST00000392769	human	ensembl	74_37	-1	known	missense	c.1309	p.E437K	1.000	NULL	superfamily_t-SNARE	-	no_errors	CEP112	HGNC	ENSG00000154240				75	0	0	34	14	29.1667
ABCA9	0	genome.wustl.edu	37	17	67024767	67024767	+	Silent	SNP	A	A	G			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	17	67024767	67024767	A	G	SNP	ABCA9	ENST00000340001	human	ensembl	74_37	-1	known	silent	c.1524	p.Y508	0.998	superfamily_P-loop_NTPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA9	HGNC	ENSG00000154258				83	0	0	73	6	7.59494
ABCA5	0	genome.wustl.edu	37	17	67251897	67251897	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	17	67251897	67251897	T	C	SNP	ABCA5	ENST00000392677	human	ensembl	74_37	-1	known	missense	c.3956	p.Y1319C	1.000	superfamily_P-loop_NTPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA5	HGNC	ENSG00000154265				31	0	0	6	5	45.4545
ABCA5	0	genome.wustl.edu	37	17	67270228	67270228	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	17	67270228	67270228	A	G	SNP	ABCA5	ENST00000392677	human	ensembl	74_37	-1	known	missense	c.2636	p.M879T	1.000	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA5	HGNC	ENSG00000154265				47	0	0	21	5	19.2308
KCNJ16	0	genome.wustl.edu	37	17	68128892	68128892	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	17	68128892	68128892	C	T	SNP	KCNJ16	ENST00000283936	human	ensembl	74_37	+1	known	missense	c.664	p.R222C	0.231	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir5,prints_K_chnl_inward-rec_Kir	-	no_errors	KCNJ16	HGNC	ENSG00000153822				56	0	0	28	19	40.4255
ASGR1	0	genome.wustl.edu	37	17	7077112	7077112	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	17	7077112	7077112	C	T	SNP	ASGR1	ENST00000269299	human	ensembl	74_37	-1	known	missense	c.742	p.G248R	1.000	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_Lectin_N,pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_AntifreezeII	-	no_errors	ASGR1	HGNC	ENSG00000141505				69	0	0	52	18	25.7143
OTOP2	0	genome.wustl.edu	37	17	72926834	72926834	+	Silent	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	17	72926834	72926834	C	T	SNP	OTOP2	ENST00000331427	human	ensembl	74_37	+1	known	silent	c.1104	p.D368	0.817	pfam_Otopetrin	pfam_Otopetrin	-	no_errors	OTOP2	HGNC	ENSG00000183034				69	0	0	43	25	36.7647
EVPL	0	genome.wustl.edu	37	17	74003904	74003904	+	Silent	SNP	A	A	G			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	17	74003904	74003904	A	G	SNP	EVPL	ENST00000301607	human	ensembl	74_37	-1	known	silent	c.5382	p.S1794	0.999	NULL	pfam_Plectin_repeat,superfamily_Ferritin-like_SF,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	EVPL	HGNC	ENSG00000167880				65	0	0	44	16	26.6667
TP53	0	genome.wustl.edu	37	17	7577523	7577523	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	17	7577523	7577523	G	A	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	missense	c.758	p.T253I	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510				73	0	0	43	35	44.8718
DNAH17	0	genome.wustl.edu	37	17	76482144	76482144	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	17	76482144	76482144	C	A	SNP	DNAH17	ENST00000389840	human	ensembl	74_37	-1	known	missense	c.7131	p.Q2377H	0.998	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_HR1_rho-bd	-	no_errors	DNAH17	HGNC	ENSG00000187775				46	0	0	29	10	25.641
DNAH2	0	genome.wustl.edu	37	17	7681676	7681676	+	Silent	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	17	7681676	7681676	C	T	SNP	DNAH2	ENST00000389173	human	ensembl	74_37	+1	known	silent	c.5430	p.T1810	0.000	superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH2	HGNC	ENSG00000183914				54	0	0	45	25	35.7143
NPTX1	0	genome.wustl.edu	37	17	78445606	78445606	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	17	78445606	78445606	C	A	SNP	NPTX1	ENST00000306773	human	ensembl	74_37	-1	known	missense	c.1003	p.G335C	0.992	pfam_Pentaxin,superfamily_ConA-like_lec_gl_sf,smart_Pentaxin	pfam_Pentaxin,superfamily_ConA-like_lec_gl_sf,smart_Pentaxin,prints_Pentaxin	-	no_errors	NPTX1	HGNC	ENSG00000171246				58	0	0	44	4	8.33333
RPTOR	0	genome.wustl.edu	37	17	78867514	78867514	+	Silent	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	17	78867514	78867514	C	T	SNP	RPTOR	ENST00000306801	human	ensembl	74_37	+1	known	silent	c.2250	p.G750	0.623	superfamily_ARM-type_fold	pfam_HEAT,pfam_WD40_repeat,superfamily_ARM-type_fold,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom,prints_Raptor	-	no_errors	RPTOR	HGNC	ENSG00000141564				49	0	0	40	16	28.5714
GUCY2D	0	genome.wustl.edu	37	17	7907470	7907470	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	17	7907470	7907470	A	C	SNP	GUCY2D	ENST00000254854	human	ensembl	74_37	+1	known	missense	c.1022	p.Q341P	0.966	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_A/G_cyclase,pfam_ANF_lig-bd_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Haem_no_assoc-bd,superfamily_Peripla_BP_I,superfamily_A/G_cyclase,superfamily_Kinase-like_dom,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_A/G_cyclase,pfscan_Prot_kinase_dom,pfscan_A/G_cyclase,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	GUCY2D	HGNC	ENSG00000132518				16	0	0	17	6	26.087
AATK	0	genome.wustl.edu	37	17	79095065	79095065	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	17	79095065	79095065	G	A	SNP	AATK	ENST00000326724	human	ensembl	74_37	-1	known	missense	c.2671	p.R891C	0.911	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	AATK	HGNC	ENSG00000181409				29	0	0	11	7	38.8889
GPS1	0	genome.wustl.edu	37	17	80014952	80014952	+	Silent	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	17	80014952	80014952	G	A	SNP	GPS1	ENST00000355130	human	ensembl	74_37	+1	known	silent	c.1533	p.Q511	1.000	NULL	pfam_26S_proteasome_reg_su-Rpn7,pfam_PCI_dom,smart_PCI_dom	-	no_errors	GPS1	HGNC	ENSG00000169727				100	0	0	56	25	30.8642
PER1	0	genome.wustl.edu	37	17	8053891	8053891	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	17	8053891	8053891	G	A	SNP	PER1	ENST00000317276	human	ensembl	74_37	-1	known	missense	c.134	p.T45I	0.948	NULL	pfam_Period_circadian-like_C,pfam_PAS_fold_3,superfamily_PAS,smart_PAS,pfscan_PAS	-	no_errors	PER1	HGNC	ENSG00000179094				113	1	0.877193	71	40	36.036
PFAS	0	genome.wustl.edu	37	17	8170401	8170401	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	17	8170401	8170401	G	A	SNP	PFAS	ENST00000314666	human	ensembl	74_37	+1	known	missense	c.3023	p.R1008Q	1.000	superfamily_AIR_synth_C_dom,tigrfam_PRibForGlyAmidine_synth	pfam_AIR_synth_C_dom,pfam_AIR_synth_N_dom,superfamily_PurM_N-like,superfamily_AIR_synth_C_dom,tigrfam_PRibForGlyAmidine_synth	-	no_errors	PFAS	HGNC	ENSG00000178921				26	0	0	21	11	34.375
ELP2	0	genome.wustl.edu	37	18	33726216	33726216	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	18	33726216	33726216	C	T	SNP	ELP2	ENST00000358232	human	ensembl	74_37	+1	known	nonsense	c.997	p.R333*	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	ELP2	HGNC	ENSG00000134759				212	0	0	198	11	5.26316
KIAA1328	0	genome.wustl.edu	37	18	34753044	34753044	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	18	34753044	34753044	G	A	SNP	KIAA1328	ENST00000280020	human	ensembl	74_37	+1	known	missense	c.1523	p.R508Q	0.940	NULL	NULL	-	no_errors	KIAA1328	HGNC	ENSG00000150477				71	0	0	57	29	33.7209
CELF4	0	genome.wustl.edu	37	18	35145354	35145354	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	18	35145354	35145354	G	A	SNP	CELF4	ENST00000420428	human	ensembl	74_37	-1	known	missense	c.251	p.T84M	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CELF4	HGNC	ENSG00000101489				116	0	0	67	34	33.6634
SETBP1	0	genome.wustl.edu	37	18	42531385	42531385	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	18	42531385	42531385	G	T	SNP	SETBP1	ENST00000282030	human	ensembl	74_37	+1	known	missense	c.2080	p.A694S	1.000	NULL	smart_AT_hook_DNA-bd_motif	-	no_errors	SETBP1	HGNC	ENSG00000152217				61	0	0	39	26	40
TCEB3B	0	genome.wustl.edu	37	18	44561456	44561456	+	Silent	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	18	44561456	44561456	C	T	SNP	TCEB3B	ENST00000332567	human	ensembl	74_37	-1	known	silent	c.180	p.Q60	0.001	pfam_TFIIS_N,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub	pfam_RNA_pol_II_trans_fac_SIII_A,pfam_TFIIS_N,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub	-	no_errors	TCEB3B	HGNC	ENSG00000206181				14	0	0	13	3	18.75
WDR7	0	genome.wustl.edu	37	18	54446705	54446705	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	18	54446705	54446705	C	A	SNP	WDR7	ENST00000254442	human	ensembl	74_37	+1	known	missense	c.2991	p.D997E	1.000	NULL	pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like_supfam,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR7	HGNC	ENSG00000091157				106	0	0	80	34	29.8246
ZCCHC2	0	genome.wustl.edu	37	18	60241471	60241471	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	18	60241471	60241471	G	A	SNP	ZCCHC2	ENST00000269499	human	ensembl	74_37	+1	known	missense	c.2157	p.M719I	1.000	NULL	pfam_Znf_CCHC,superfamily_Phox,superfamily_Znf_CCHC,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC2	HGNC	ENSG00000141664				159	0	0	100	36	26.4706
SERPINB8	0	genome.wustl.edu	37	18	61654276	61654276	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	18	61654276	61654276	G	A	SNP	SERPINB8	ENST00000353706	human	ensembl	74_37	+1	known	missense	c.889	p.A297T	1.000	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINB8	HGNC	ENSG00000166401				53	0	0	29	19	39.5833
ADNP2	0	genome.wustl.edu	37	18	77893766	77893766	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	18	77893766	77893766	G	A	SNP	ADNP2	ENST00000262198	human	ensembl	74_37	+1	known	missense	c.470	p.C157Y	0.997	smart_Znf_C2H2-like	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ADNP2	HGNC	ENSG00000101544				40	0	0	34	10	22.7273
CDKN2D	0	genome.wustl.edu	37	19	10677827	10677827	+	Silent	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	19	10677827	10677827	G	A	SNP	CDKN2D	ENST00000335766	human	ensembl	74_37	-1	known	silent	c.408	p.D136	0.621	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	CDKN2D	HGNC	ENSG00000129355				83	0	0	69	23	25
BEST2	0	genome.wustl.edu	37	19	12866954	12866954	+	Splice_Site	SNP	G	G	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	19	12866954	12866954	G	T	SNP	BEST2	ENST00000042931	human	ensembl	74_37	+1	known	splice_site	c.949-1	e8-1	1.000	-	-	-	no_errors	BEST2	HGNC	ENSG00000039987				129	0	0	135	16	10.596
HOOK2	0	genome.wustl.edu	37	19	12874211	12874211	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	19	12874211	12874211	C	T	SNP	HOOK2	ENST00000397668	human	ensembl	74_37	-1	known	missense	c.2045	p.R682Q	0.006	pfam_Hook-related_fam	pfam_Hook-related_fam,superfamily_UBA-like	-	no_errors	HOOK2	HGNC	ENSG00000095066				72	0	0	61	4	6.15385
APC2	0	genome.wustl.edu	37	19	1460308	1460308	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	19	1460308	1460308	G	A	SNP	APC2	ENST00000233607	human	ensembl	74_37	+1	known	missense	c.1432	p.V478I	0.989	superfamily_ARM-type_fold,smart_Armadillo	pfam_APC_basic_dom,pfam_APC_dom,pfam_APC_Cys-rich_rpt,pfam_Armadillo,pfam_SAMP,superfamily_ARM-type_fold,superfamily_Prefoldin,smart_Armadillo	-	no_errors	APC2	HGNC	ENSG00000115266				89	0	0	77	7	8.33333
APC2	0	genome.wustl.edu	37	19	1466430	1466430	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	19	1466430	1466430	G	A	SNP	APC2	ENST00000233607	human	ensembl	74_37	+1	known	missense	c.3130	p.A1044T	0.011	NULL	pfam_APC_basic_dom,pfam_APC_dom,pfam_APC_Cys-rich_rpt,pfam_Armadillo,pfam_SAMP,superfamily_ARM-type_fold,superfamily_Prefoldin,smart_Armadillo	-	no_errors	APC2	HGNC	ENSG00000115266				14	0	0	9	9	50
OR7A5	0	genome.wustl.edu	37	19	14938705	14938705	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	19	14938705	14938705	C	T	SNP	OR7A5	ENST00000322301	human	ensembl	74_37	-1	known	missense	c.349	p.V117M	0.005	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR7A5	HGNC	ENSG00000188269				91	0	0	78	6	7.14286
MBD3	0	genome.wustl.edu	37	19	1578416	1578416	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	19	1578416	1578416	C	A	SNP	MBD3	ENST00000156825	human	ensembl	74_37	-1	known	missense	c.799	p.A267S	0.000	superfamily_ARM-type_fold	pfam_Methyl_CpG_DNA-bd,superfamily_DNA-bd_dom,superfamily_ARM-type_fold,smart_Methyl_CpG_DNA-bd,pfscan_Methyl_CpG_DNA-bd	-	no_errors	MBD3	HGNC	ENSG00000071655				23	0	0	15	7	31.8182
TCF3	0	genome.wustl.edu	37	19	1615385	1615385	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	19	1615385	1615385	C	T	SNP	TCF3	ENST00000262965	human	ensembl	74_37	-1	known	missense	c.1721	p.R574H	1.000	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	TCF3	HGNC	ENSG00000071564				123	1	0.806452	74	25	25.2525
CALR3	0	genome.wustl.edu	37	19	16593516	16593516	+	Silent	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	19	16593516	16593516	C	T	SNP	CALR3	ENST00000269881	human	ensembl	74_37	-1	known	silent	c.759	p.A253	0.001	pfam_Calret/calnex,superfamily_ConA-like_lec_gl_sf,superfamily_Calreticulin/calnexin_P_dom,pirsf_Calreticulin,prints_Calret/calnex	pfam_Calret/calnex,superfamily_ConA-like_lec_gl_sf,superfamily_Calreticulin/calnexin_P_dom,pirsf_Calreticulin,prints_Calret/calnex	-	no_errors	CALR3	HGNC	ENSG00000269058				47	0	0	24	8	25
RPSAP58	0	genome.wustl.edu	37	19	24010328	24010328	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	19	24010328	24010328	T	A	SNP	RPSAP58	ENST00000354585	human	ensembl	74_37	+1	known	missense	c.365	p.L122H	0.997	pfam_Ribosomal_S2,superfamily_Ribosomal_S2_flav_dom,prints_Ribosomal_S2,tigrfam_Ribosomal_S2_euk/arc	pfam_Ribosomal_S2,superfamily_Ribosomal_S2_flav_dom,prints_Ribosomal_S2,tigrfam_Ribosomal_S2_euk/arc	-	no_errors	RPSAP58	HGNC	ENSG00000205246				40	0	0	32	15	31.9149
TMPRSS9	0	genome.wustl.edu	37	19	2424144	2424144	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	19	2424144	2424144	G	A	SNP	TMPRSS9	ENST00000332578	human	ensembl	74_37	+1	known	missense	c.2504	p.R835H	0.181	pirsf_Pept_S1A_polyserase-1,pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pirsf_Pept_S1A_polyserase-1,pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,pfam_LDrepeatLR_classA_rpt,superfamily_Trypsin-like_Pept_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_LDrepeatLR_classA_rpt,pfscan_Peptidase_S1	-	no_errors	TMPRSS9	HGNC	ENSG00000178297				8	0	0	4	3	42.8571
ZNF536	0	genome.wustl.edu	37	19	30935847	30935847	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	19	30935847	30935847	A	G	SNP	ZNF536	ENST00000355537	human	ensembl	74_37	+1	known	missense	c.1378	p.M460V	0.152	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF536	HGNC	ENSG00000198597				44	0	0	30	18	37.5
CHST8	0	genome.wustl.edu	37	19	34263386	34263386	+	Silent	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	19	34263386	34263386	C	T	SNP	CHST8	ENST00000262622	human	ensembl	74_37	+1	known	silent	c.693	p.S231	0.790	pfam_Sulfotransferase	pfam_Sulfotransferase	-	no_errors	CHST8	HGNC	ENSG00000124302				68	0	0	51	28	35.443
KIAA0355	0	genome.wustl.edu	37	19	34832706	34832706	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	19	34832706	34832706	C	T	SNP	KIAA0355	ENST00000299505	human	ensembl	74_37	+1	known	missense	c.1867	p.R623C	0.728	NULL	NULL	-	no_errors	KIAA0355	HGNC	ENSG00000166398				59	0	0	42	14	25
UBA2	0	genome.wustl.edu	37	19	34957932	34957932	+	RNA	SNP	C	C	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	19	34957932	34957932	C	A	SNP	UBA2	ENST00000588585	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.008	-	-	-	no_errors	UBA2	HGNC	ENSG00000126261				44	0	0	25	4	13.7931
CD22	0	genome.wustl.edu	37	19	35831914	35831914	+	Silent	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	19	35831914	35831914	C	T	SNP	CD22	ENST00000085219	human	ensembl	74_37	+1	known	silent	c.1380	p.G460	0.000	smart_Ig_sub,pfscan_Ig-like_dom	pfam_Immunoglobulin,pfam_Ig_I-set,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	CD22	HGNC	ENSG00000012124				47	0	0	24	20	45.4545
GIPC3	0	genome.wustl.edu	37	19	3589552	3589552	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	19	3589552	3589552	C	T	SNP	GIPC3	ENST00000322315	human	ensembl	74_37	+1	known	missense	c.704	p.A235V	0.995	pirsf_UCP038083_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pirsf_UCP038083_PDZ,pfscan_PDZ	-	no_errors	GIPC3	HGNC	ENSG00000179855				61	0	0	23	18	43.9024
KRTDAP	0	genome.wustl.edu	37	19	35979569	35979569	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	19	35979569	35979569	G	A	SNP	KRTDAP	ENST00000338897	human	ensembl	74_37	-1	known	nonsense	c.163	p.R55*	0.000	NULL	NULL	-	no_errors	KRTDAP	HGNC	ENSG00000188508				130	0	0	96	46	32.3944
HKR1	0	genome.wustl.edu	37	19	37854373	37854373	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	19	37854373	37854373	G	A	SNP	HKR1	ENST00000324411	human	ensembl	74_37	+1	known	missense	c.1676	p.G559D	0.973	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	HKR1	HGNC	ENSG00000181666				43	0	0	33	5	13.1579
SIPA1L3	0	genome.wustl.edu	37	19	38655327	38655327	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	19	38655327	38655327	G	A	SNP	SIPA1L3	ENST00000222345	human	ensembl	74_37	+1	known	missense	c.3989	p.R1330Q	1.000	NULL	pfam_DUF3401,pfam_Rap_GAP_dom,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP_dom	-	no_errors	SIPA1L3	HGNC	ENSG00000105738				38	0	0	18	7	28
CATSPERG	0	genome.wustl.edu	37	19	38852388	38852388	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	19	38852388	38852388	C	T	SNP	CATSPERG	ENST00000409235	human	ensembl	74_37	+1	known	missense	c.1981	p.R661W	0.391	NULL	NULL	-	no_errors	CATSPERG	HGNC	ENSG00000099338				17	0	0	12	3	20
SIRT2	0	genome.wustl.edu	37	19	39384074	39384074	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	19	39384074	39384074	C	A	SNP	SIRT2	ENST00000249396	human	ensembl	74_37	-1	known	missense	c.206	p.R69L	0.955	pirsf_NAD-dep_deAcase_SIR2_class_I,pfscan_Ssirtuin_cat_dom	pfam_Sirtuin,pirsf_NAD-dep_deAcase_SIR2_class_I,pfscan_Ssirtuin_cat_dom	-	no_errors	SIRT2	HGNC	ENSG00000068903				33	0	0	27	6	18.1818
ZNF780B	0	genome.wustl.edu	37	19	40540359	40540359	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	19	40540359	40540359	C	T	SNP	ZNF780B	ENST00000434248	human	ensembl	74_37	-1	known	missense	c.2407	p.V803I	0.979	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF780B	HGNC	ENSG00000128000				57	0	0	46	9	16.3636
AKT2	0	genome.wustl.edu	37	19	40762934	40762934	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	19	40762934	40762934	C	T	SNP	AKT2	ENST00000392038	human	ensembl	74_37	-1	known	missense	c.74	p.R25Q	0.981	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pleckstrin_homology,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom	-	no_errors	AKT2	HGNC	ENSG00000105221				67	0	0	53	14	20.8955
TMIGD2	0	genome.wustl.edu	37	19	4292666	4292666	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	19	4292666	4292666	C	T	SNP	TMIGD2	ENST00000301272	human	ensembl	74_37	-1	known	missense	c.779	p.R260K	0.002	NULL	smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	TMIGD2	HGNC	ENSG00000167664				82	0	0	57	22	27.8481
FSD1	0	genome.wustl.edu	37	19	4318365	4318365	+	Silent	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	19	4318365	4318365	G	A	SNP	FSD1	ENST00000221856	human	ensembl	74_37	+1	known	silent	c.822	p.A274	0.979	superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Bbox_C,smart_Fibronectin_type3,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	-	no_errors	FSD1	HGNC	ENSG00000105255				36	0	0	20	15	42.8571
PSG2	0	genome.wustl.edu	37	19	43579693	43579693	+	Silent	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	19	43579693	43579693	C	T	SNP	PSG2	ENST00000406487	human	ensembl	74_37	-1	known	silent	c.522	p.P174	0.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	PSG2	HGNC	ENSG00000242221				260	0	0	173	85	32.9457
IRGQ	0	genome.wustl.edu	37	19	44097037	44097037	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	19	44097037	44097037	G	A	SNP	IRGQ	ENST00000422989	human	ensembl	74_37	-1	known	missense	c.1013	p.P338L	0.970	NULL	superfamily_P-loop_NTPase	-	no_errors	IRGQ	HGNC	ENSG00000167378				188	0	0	91	54	37.2414
SEMA6B	0	genome.wustl.edu	37	19	4557220	4557220	+	Silent	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	19	4557220	4557220	G	A	SNP	SEMA6B	ENST00000301293	human	ensembl	74_37	-1	known	silent	c.261	p.R87	0.854	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,pfscan_Semap_dom	-	no_errors	SEMA6B	HGNC	ENSG00000167680				42	0	0	16	6	27.2727
RSPH6A	0	genome.wustl.edu	37	19	46313976	46313976	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	19	46313976	46313976	G	A	SNP	RSPH6A	ENST00000221538	human	ensembl	74_37	-1	known	missense	c.773	p.T258M	0.937	pfam_Radial_spoke	pfam_Radial_spoke	-	no_errors	RSPH6A	HGNC	ENSG00000104941				51	0	0	30	28	48.2759
PNMAL2	0	genome.wustl.edu	37	19	46997563	46997563	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	19	46997563	46997563	C	T	SNP	PNMAL2	ENST00000599531	human	ensembl	74_37	-1	known	missense	c.1160	p.R387H	0.313	NULL	NULL	-	no_errors	PNMAL2	HGNC	ENSG00000204851				24	0	0	18	5	21.7391
LIG1	0	genome.wustl.edu	37	19	48646810	48646810	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	19	48646810	48646810	C	T	SNP	LIG1	ENST00000263274	human	ensembl	74_37	-1	known	missense	c.904	p.V302M	1.000	pfam_DNA_ligase_ATP-dep_N,superfamily_DNA_ligase_ATP-dep_N	pfam_DNA_ligase_ATP-dep_cent,pfam_DNA_ligase_ATP-dep_N,pfam_DNA_ligase_ATP-dep_C,superfamily_DNA_ligase_ATP-dep_N,superfamily_NA-bd_OB-fold,pfscan_DNA_ligase_ATP-dep_cent,tigrfam_DNA_ligase_ATP-dep	-	no_errors	LIG1	HGNC	ENSG00000105486				122	0	0	76	34	30.9091
GRIN2D	0	genome.wustl.edu	37	19	48919394	48919394	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	19	48919394	48919394	T	C	SNP	GRIN2D	ENST00000263269	human	ensembl	74_37	+1	known	missense	c.1717	p.S573P	1.000	pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2D	HGNC	ENSG00000105464				40	0	0	45	3	6.25
TULP2	0	genome.wustl.edu	37	19	49391323	49391323	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	19	49391323	49391323	G	A	SNP	TULP2	ENST00000221399	human	ensembl	74_37	-1	known	missense	c.832	p.R278W	1.000	superfamily_Tubby_C-like	pfam_Tubby_C,superfamily_Tubby_C-like,prints_Tubby_C,prints_Tubby_N	-	no_errors	TULP2	HGNC	ENSG00000104804				35	0	0	17	12	41.3793
PPFIA3	0	genome.wustl.edu	37	19	49632105	49632105	+	Silent	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	19	49632105	49632105	C	T	SNP	PPFIA3	ENST00000334186	human	ensembl	74_37	+1	known	silent	c.343	p.L115	1.000	NULL	pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	PPFIA3	HGNC	ENSG00000177380				86	0	0	56	13	18.8406
TEAD2	0	genome.wustl.edu	37	19	49863251	49863251	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	19	49863251	49863251	C	T	SNP	TEAD2	ENST00000311227	human	ensembl	74_37	-1	known	missense	c.82	p.G28S	0.867	pfam_TEA/ATTS,pirsf_TEF	pfam_TEA/ATTS,smart_TEA/ATTS,pirsf_TEF,pfscan_TEA/ATTS,prints_TEA/ATTS	-	no_errors	TEAD2	HGNC	ENSG00000074219				108	0	0	46	27	36.9863
SLC17A7	0	genome.wustl.edu	37	19	49934335	49934335	+	Silent	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	19	49934335	49934335	G	A	SNP	SLC17A7	ENST00000221485	human	ensembl	74_37	-1	known	silent	c.1326	p.N442	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC17A7	HGNC	ENSG00000104888				40	0	0	30	17	36.1702
TSKS	0	genome.wustl.edu	37	19	50250722	50250722	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	19	50250722	50250722	C	T	SNP	TSKS	ENST00000246801	human	ensembl	74_37	-1	known	missense	c.587	p.C196Y	1.000	NULL	NULL	-	no_errors	TSKS	HGNC	ENSG00000126467				93	0	0	76	4	5
EMC10	0	genome.wustl.edu	37	19	50983973	50983973	+	Silent	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	19	50983973	50983973	C	T	SNP	EMC10	ENST00000334976	human	ensembl	74_37	+1	known	silent	c.538	p.L180	1.000	NULL	NULL	-	no_errors	EMC10	HGNC	ENSG00000161671				12	0	0	7	3	30
CLEC11A	0	genome.wustl.edu	37	19	51228606	51228606	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	19	51228606	51228606	C	T	SNP	CLEC11A	ENST00000250340	human	ensembl	74_37	+1	known	missense	c.854	p.P285L	0.996	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	CLEC11A	HGNC	ENSG00000105472				17	0	0	13	4	23.5294
SIGLEC12	0	genome.wustl.edu	37	19	51994931	51994931	+	Silent	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	19	51994931	51994931	G	A	SNP	SIGLEC12	ENST00000291707	human	ensembl	74_37	-1	known	silent	c.1752	p.I584	0.000	NULL	pfam_Ig_V-set,pfam_Ig_I-set,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	SIGLEC12	HGNC	ENSG00000254521				107	0	0	88	34	27.8689
SIGLEC12	0	genome.wustl.edu	37	19	52002839	52002839	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	19	52002839	52002839	C	T	SNP	SIGLEC12	ENST00000291707	human	ensembl	74_37	-1	known	missense	c.940	p.V314M	0.000	pfam_CD80_C2-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_Ig_I-set,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	SIGLEC12	HGNC	ENSG00000254521				48	0	0	38	14	26.9231
ZNF808	0	genome.wustl.edu	37	19	53058467	53058467	+	Silent	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	19	53058467	53058467	C	T	SNP	ZNF808	ENST00000359798	human	ensembl	74_37	+1	known	silent	c.2298	p.N766	0.001	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF808	HGNC	ENSG00000198482				204	0	0	133	72	35.122
ZNF320	0	genome.wustl.edu	37	19	53384108	53384108	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	19	53384108	53384108	C	T	SNP	ZNF320	ENST00000391781	human	ensembl	74_37	-1	known	missense	c.1271	p.R424H	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF320	HGNC	ENSG00000182986				70	0	0	51	15	22.7273
ZNF816	0	genome.wustl.edu	37	19	53454224	53454224	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	19	53454224	53454224	C	A	SNP	ZNF816	ENST00000357666	human	ensembl	74_37	-1	known	missense	c.804	p.Q268H	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF816	HGNC	ENSG00000180257				134	0	0	67	47	41.2281
TNNT1	0	genome.wustl.edu	37	19	55658533	55658533	+	RNA	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	19	55658533	55658533	C	T	SNP	TNNT1	ENST00000592920	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.006	-	-	-	no_errors	TNNT1	HGNC	ENSG00000105048				26	0	0	19	13	40.625
PPP6R1	0	genome.wustl.edu	37	19	55758396	55758396	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	19	55758396	55758396	C	T	SNP	PPP6R1	ENST00000412770	human	ensembl	74_37	-1	known	missense	c.76	p.E26K	0.997	NULL	pfam_SAPS,superfamily_ARM-type_fold	-	no_errors	PPP6R1	HGNC	ENSG00000105063				117	0	0	80	30	27.2727
FIZ1	0	genome.wustl.edu	37	19	56104137	56104137	+	Silent	SNP	C	C	G			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	19	56104137	56104137	C	G	SNP	FIZ1	ENST00000221665	human	ensembl	74_37	-1	known	silent	c.1170	p.A390	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	FIZ1	HGNC	ENSG00000179943				20	0	0	6	4	40
EPN1	0	genome.wustl.edu	37	19	56200241	56200241	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	19	56200241	56200241	T	C	SNP	EPN1	ENST00000411543	human	ensembl	74_37	+1	known	missense	c.817	p.S273P	0.984	NULL	pfam_Epsin_dom_N,pfam_ANTH_dom,superfamily_ENTH_VHS,smart_Epsin-like_N,smart_Ubiquitin-int_motif,pfscan_Epsin-like_N,pfscan_Ubiquitin-int_motif	-	no_errors	EPN1	HGNC	ENSG00000063245				8	0	0	1	2	66.6667
NLRP11	0	genome.wustl.edu	37	19	56303726	56303726	+	Silent	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	19	56303726	56303726	G	A	SNP	NLRP11	ENST00000443188	human	ensembl	74_37	-1	known	silent	c.2454	p.Y818	0.000	NULL	pfam_DAPIN,superfamily_DEATH-like_dom,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP11	HGNC	ENSG00000179873				119	0	0	83	41	33.0645
ZNF444	0	genome.wustl.edu	37	19	56671208	56671208	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	19	56671208	56671208	G	A	SNP	ZNF444	ENST00000337080	human	ensembl	74_37	+1	known	missense	c.622	p.A208T	0.044	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF444	HGNC	ENSG00000167685				11	0	0	7	3	30
PRR22	0	genome.wustl.edu	37	19	5783938	5783938	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	19	5783938	5783938	A	G	SNP	PRR22	ENST00000419421	human	ensembl	74_37	-1	known	missense	c.320	p.V107A	0.025	NULL	NULL	-	no_errors	PRR22	HGNC	ENSG00000212123				8	0	0	3	3	50
ZNF606	0	genome.wustl.edu	37	19	58511153	58511153	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	19	58511153	58511153	G	T	SNP	ZNF606	ENST00000547121	human	ensembl	74_37	-1	putative	missense	c.200	p.P67H	0.012	NULL	NULL	-	no_errors	ZNF606	HGNC	ENSG00000166704				58	0	0	50	6	10.7143
ZSCAN18	0	genome.wustl.edu	37	19	58596096	58596096	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	19	58596096	58596096	C	T	SNP	ZSCAN18	ENST00000600404	human	ensembl	74_37	-1	known	missense	c.1657	p.V553M	0.000	NULL	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN18	HGNC	ENSG00000121413				15	0	0	7	3	30
ZNF497	0	genome.wustl.edu	37	19	58867569	58867569	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	19	58867569	58867569	G	T	SNP	ZNF497	ENST00000311044	human	ensembl	74_37	-1	known	missense	c.1433	p.P478H	0.942	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF497	HGNC	ENSG00000174586				23	0	0	23	8	25.8065
MZF1	0	genome.wustl.edu	37	19	59074762	59074762	+	Silent	SNP	T	T	C			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	19	59074762	59074762	T	C	SNP	MZF1	ENST00000215057	human	ensembl	74_37	-1	known	silent	c.882	p.S294	0.279	NULL	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	MZF1	HGNC	ENSG00000099326				11	0	0	7	2	22.2222
TUBB4A	0	genome.wustl.edu	37	19	6496189	6496189	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	19	6496189	6496189	C	T	SNP	TUBB4A	ENST00000598006	human	ensembl	74_37	-1	putative	missense	c.278	p.R93Q	0.035	NULL	superfamily_Tubulin_FtsZ_GTPase	-	no_errors	TUBB4A	HGNC	ENSG00000104833				116	0	0	73	17	18.8889
INSR	0	genome.wustl.edu	37	19	7152853	7152853	+	Silent	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	19	7152853	7152853	C	T	SNP	INSR	ENST00000302850	human	ensembl	74_37	-1	known	silent	c.2115	p.S705	0.000	pirsf_Tyr_kinase_insulin-like_rcpt,superfamily_Fibronectin_type3,smart_Fibronectin_type3	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_dom,pfam_Furin-like_Cys-rich_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_Fibronectin_type3,smart_Furin_repeat,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom	-	no_errors	INSR	HGNC	ENSG00000171105				99	0	0	113	7	5.83333
SNAPC2	0	genome.wustl.edu	37	19	7987008	7987008	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	19	7987008	7987008	T	C	SNP	SNAPC2	ENST00000221573	human	ensembl	74_37	+1	known	missense	c.461	p.L154P	0.003	pfam_SnAPC_su2-like	pfam_SnAPC_su2-like	-	no_errors	SNAPC2	HGNC	ENSG00000104976				133	0	0	87	39	30.9524
CERS4	0	genome.wustl.edu	37	19	8326868	8326868	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	19	8326868	8326868	G	A	SNP	CERS4	ENST00000251363	human	ensembl	74_37	+1	known	missense	c.1060	p.A354T	0.003	pirsf_Longevity_assurance_LAG1_LAC1	pfam_TLC-dom,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_TLC-dom,pirsf_Longevity_assurance_LAG1_LAC1,pfscan_TLC-dom,pfscan_Homeobox_dom	-	no_errors	CERS4	HGNC	ENSG00000090661				48	0	0	26	11	29.7297
MUC16	0	genome.wustl.edu	37	19	9067365	9067365	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	19	9067365	9067365	G	A	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.20081	p.A6694V	0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				193	0	0	139	53	27.6042
ZNF560	0	genome.wustl.edu	37	19	9578460	9578460	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	19	9578460	9578460	G	A	SNP	ZNF560	ENST00000301480	human	ensembl	74_37	-1	known	missense	c.1163	p.P388L	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF560	HGNC	ENSG00000198028				100	0	0	76	28	26.9231
SLC9A4	0	genome.wustl.edu	37	2	103149045	103149045	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	2	103149045	103149045	G	T	SNP	SLC9A4	ENST00000295269	human	ensembl	74_37	+1	known	missense	c.2295	p.E765D	0.191	NULL	pfam_Cation/H_exchanger,prints_NaH_exchanger,prints_Na/H_exchanger_2,tigrfam_NaH_exchanger	-	no_errors	SLC9A4	HGNC	ENSG00000180251				31	0	0	18	10	35.7143
ZC3H6	0	genome.wustl.edu	37	2	113082135	113082135	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	2	113082135	113082135	C	A	SNP	ZC3H6	ENST00000343936	human	ensembl	74_37	+1	known	missense	c.1747	p.Q583K	0.987	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H6	HGNC	ENSG00000188177				24	0	0	15	6	28.5714
DPP10	0	genome.wustl.edu	37	2	116497367	116497367	+	Silent	SNP	A	A	G			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	2	116497367	116497367	A	G	SNP	DPP10	ENST00000393147	human	ensembl	74_37	+1	known	silent	c.762	p.R254	0.992	pfam_Peptidase_S9B	pfam_Peptidase_S9B,pfam_Peptidase_S9	-	no_errors	DPP10	HGNC	ENSG00000175497				116	0	0	99	37	27.2059
MAP3K2	0	genome.wustl.edu	37	2	128083333	128083333	+	Silent	SNP	A	A	G			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	2	128083333	128083333	A	G	SNP	MAP3K2	ENST00000344908	human	ensembl	74_37	-1	known	silent	c.648	p.S216	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_OPR_PB1,superfamily_Kinase-like_dom,smart_OPR_PB1,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP3K2	HGNC	ENSG00000169967				114	0	0	91	7	7.14286
AMMECR1L	0	genome.wustl.edu	37	2	128628889	128628889	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	2	128628889	128628889	C	T	SNP	AMMECR1L	ENST00000272647	human	ensembl	74_37	-1	known	missense	c.452	p.R151H	1.000	pfam_AMMECR1_domain,superfamily_AMMECR1_domain,pfscan_AMMECR1_domain,tigrfam_AMMECR1	pfam_AMMECR1_domain,superfamily_AMMECR1_domain,pfscan_AMMECR1_domain,tigrfam_AMMECR1	-	no_errors	AMMECR1L	HGNC	ENSG00000144233				52	0	0	33	13	28.2609
MYCN	0	genome.wustl.edu	37	2	16082936	16082936	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	2	16082936	16082936	G	T	SNP	MYCN	ENST00000281043	human	ensembl	74_37	+1	known	missense	c.750	p.K250N	0.947	pfam_Tscrpt_reg_Myc_N	pfam_Tscrpt_reg_Myc_N,pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom,prints_Tscrpt_reg_Myc	-	no_errors	MYCN	HGNC	ENSG00000134323				18	0	0	13	3	18.75
MLK7-AS1	0	genome.wustl.edu	37	2	174074407	174074407	+	RNA	SNP	A	A	G			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	2	174074407	174074407	A	G	SNP	MLK7-AS1	ENST00000423106	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MLK7-AS1	HGNC	ENSG00000238133				10	0	0	8	16	66.6667
KIAA1715	0	genome.wustl.edu	37	2	176857066	176857066	+	Silent	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	2	176857066	176857066	G	A	SNP	KIAA1715	ENST00000544803	human	ensembl	74_37	-1	known	silent	c.150	p.S50	0.272	NULL	pfam_DUF2296	-	no_errors	KIAA1715	HGNC	ENSG00000144320				57	0	0	17	10	37.037
HOXD13	0	genome.wustl.edu	37	2	176958155	176958155	+	Silent	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	2	176958155	176958155	G	A	SNP	HOXD13	ENST00000392539	human	ensembl	74_37	+1	putative	silent	c.537	p.P179	0.976	NULL	pfam_Homeobox_dom,pfam_HoxA13_N,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	HOXD13	HGNC	ENSG00000128714				47	0	0	28	24	46.1538
RAD51AP2	0	genome.wustl.edu	37	2	17698848	17698848	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	2	17698848	17698848	C	T	SNP	RAD51AP2	ENST00000399080	human	ensembl	74_37	-1	known	missense	c.835	p.A279T	0.001	NULL	NULL	-	no_errors	RAD51AP2	HGNC	ENSG00000214842				69	0	0	28	13	31.7073
HOXD4	0	genome.wustl.edu	37	2	177016381	177016381	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	2	177016381	177016381	T	C	SNP	HOXD4	ENST00000306324	human	ensembl	74_37	+1	known	missense	c.20	p.M7T	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa,prints_Homeobox_antennapedia	-	no_errors	HOXD4	HGNC	ENSG00000170166				85	0	0	47	14	22.9508
TTN	0	genome.wustl.edu	37	2	179416766	179416766	+	Silent	SNP	A	A	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	2	179416766	179416766	A	T	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	silent	c.83157	p.P27719	0.998	pfam_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				65	0	0	51	3	5.55556
TTN	0	genome.wustl.edu	37	2	179439492	179439492	+	Silent	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	2	179439492	179439492	G	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	silent	c.63663	p.T21221	1.000	pfam_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				84	0	0	50	23	31.5068
TTN	0	genome.wustl.edu	37	2	179481660	179481660	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	2	179481660	179481660	T	G	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.40252	p.S13418R	1.000	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				143	0	0	107	43	28.6667
ASNSD1	0	genome.wustl.edu	37	2	190531174	190531174	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	2	190531174	190531174	T	C	SNP	ASNSD1	ENST00000260952	human	ensembl	74_37	+1	known	missense	c.316	p.S106P	0.226	NULL	pfam_Asn_synthase	-	no_errors	ASNSD1	HGNC	ENSG00000138381				89	0	0	72	13	15.2941
MYT1L	0	genome.wustl.edu	37	2	1906931	1906931	+	Silent	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	2	1906931	1906931	G	A	SNP	MYT1L	ENST00000399161	human	ensembl	74_37	-1	known	silent	c.1953	p.Y651	1.000	pfam_Myelin_TF	pfam_Myelin_TF,pfam_Znf_C2HC	-	no_errors	MYT1L	HGNC	ENSG00000186487				84	0	0	50	21	29.5775
DNAH7	0	genome.wustl.edu	37	2	196759791	196759791	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	2	196759791	196759791	C	T	SNP	DNAH7	ENST00000312428	human	ensembl	74_37	-1	known	missense	c.4805	p.R1602H	1.000	superfamily_P-loop_NTPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,superfamily_P-loop_NTPase,superfamily_Signal_recog_particle_SRP9/14,smart_AAA+_ATPase,pfscan_EF_hand_dom	-	no_errors	DNAH7	HGNC	ENSG00000118997				57	0	0	28	8	22.2222
MYT1L	0	genome.wustl.edu	37	2	1983518	1983518	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	2	1983518	1983518	C	T	SNP	MYT1L	ENST00000399161	human	ensembl	74_37	-1	known	missense	c.32	p.R11H	1.000	NULL	pfam_Myelin_TF,pfam_Znf_C2HC	-	no_errors	MYT1L	HGNC	ENSG00000186487				50	0	0	31	7	18.4211
ALS2CR11	0	genome.wustl.edu	37	2	202436664	202436664	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	2	202436664	202436664	G	A	SNP	ALS2CR11	ENST00000286195	human	ensembl	74_37	-1	known	missense	c.833	p.T278I	0.872	NULL	superfamily_C2_dom	-	no_errors	ALS2CR11	HGNC	ENSG00000155754				79	0	0	26	15	36.5854
ACADL	0	genome.wustl.edu	37	2	211069401	211069401	+	Silent	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	2	211069401	211069401	G	A	SNP	ACADL	ENST00000233710	human	ensembl	74_37	-1	known	silent	c.774	p.T258	0.984	superfamily_AcylCoA_DH/oxidase_NM_dom	pfam_AcylCo_DH/oxidase_C,pfam_AcylCoA_DH/ox_N,pfam_Acyl-CoA_Oxase/DH_cen-dom,pfam_Acyl-CoA_DH_2_C,superfamily_AcylCoA_DH/oxidase_NM_dom,superfamily_AcylCo_DH/oxidase_C	-	no_errors	ACADL	HGNC	ENSG00000115361				77	0	0	53	4	7.01754
ERBB4	0	genome.wustl.edu	37	2	212615400	212615400	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	2	212615400	212615400	G	A	SNP	ERBB4	ENST00000342788	human	ensembl	74_37	-1	known	missense	c.586	p.R196C	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Furin-like_Cys-rich_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	ERBB4	HGNC	ENSG00000178568				82	0	0	40	18	31.0345
OBSL1	0	genome.wustl.edu	37	2	220430066	220430066	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	2	220430066	220430066	G	A	SNP	OBSL1	ENST00000404537	human	ensembl	74_37	-1	known	missense	c.2305	p.R769C	0.553	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	OBSL1	HGNC	ENSG00000124006				82	0	0	57	25	30.4878
OBSL1	0	genome.wustl.edu	37	2	220434995	220434995	+	Silent	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	2	220434995	220434995	G	A	SNP	OBSL1	ENST00000404537	human	ensembl	74_37	-1	known	silent	c.960	p.A320	0.012	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	OBSL1	HGNC	ENSG00000124006				15	0	0	8	6	42.8571
CHRNG	0	genome.wustl.edu	37	2	233409277	233409277	+	Silent	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	2	233409277	233409277	G	A	SNP	CHRNG	ENST00000389494	human	ensembl	74_37	+1	known	silent	c.1236	p.A412	0.263	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel	-	no_errors	CHRNG	HGNC	ENSG00000196811				39	0	0	18	11	37.931
UGT1A8	0	genome.wustl.edu	37	2	234669110	234669110	+	Silent	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	2	234669110	234669110	C	T	SNP	UGT1A8	ENST00000305208	human	ensembl	74_37	+1	known	silent	c.177	p.V59	0.008	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT1A8	HGNC	ENSG00000242366				89	0	0	67	36	34.9515
GBX2	0	genome.wustl.edu	37	2	237075034	237075034	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	2	237075034	237075034	G	A	SNP	GBX2	ENST00000551105	human	ensembl	74_37	-1	novel	nonsense	c.607	p.R203*	0.917	NULL	NULL	-	no_errors	GBX2	HGNC	ENSG00000168505				123	0	0	73	43	37.069
COL6A3	0	genome.wustl.edu	37	2	238274488	238274488	+	Silent	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	2	238274488	238274488	C	T	SNP	COL6A3	ENST00000295550	human	ensembl	74_37	-1	known	silent	c.5691	p.P1897	0.003	smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,smart_VWF_A,smart_Prot_inh_Kunz-m,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL6A3	HGNC	ENSG00000163359				77	0	0	63	18	22.2222
MFSD2B	0	genome.wustl.edu	37	2	24247037	24247037	+	Silent	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	2	24247037	24247037	C	T	SNP	MFSD2B	ENST00000338315	human	ensembl	74_37	+1	known	silent	c.1386	p.G462	0.015	superfamily_MFS_dom_general_subst_transpt	superfamily_MFS_dom_general_subst_transpt	-	no_errors	MFSD2B	HGNC	ENSG00000205639				30	0	0	20	8	28.5714
SLC5A6	0	genome.wustl.edu	37	2	27423328	27423328	+	Silent	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	2	27423328	27423328	G	A	SNP	SLC5A6	ENST00000310574	human	ensembl	74_37	-1	known	silent	c.1884	p.C628	0.948	NULL	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A6	HGNC	ENSG00000138074				42	0	0	16	13	44.8276
ALK	0	genome.wustl.edu	37	2	29462672	29462672	+	Silent	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	2	29462672	29462672	G	A	SNP	ALK	ENST00000389048	human	ensembl	74_37	-1	known	silent	c.2229	p.G743	0.718	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_MAM_dom,superfamily_Kinase-like_dom,superfamily_ConA-like_lec_gl_sf,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_MAM_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	ALK	HGNC	ENSG00000171094				59	0	0	44	18	29.0323
SPTBN1	0	genome.wustl.edu	37	2	54858256	54858256	+	Silent	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	2	54858256	54858256	C	T	SNP	SPTBN1	ENST00000356805	human	ensembl	74_37	+1	known	silent	c.3072	p.S1024	0.009	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTBN1	HGNC	ENSG00000115306				85	0	0	46	29	38.6667
USP34	0	genome.wustl.edu	37	2	61575984	61575984	+	Silent	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	2	61575984	61575984	G	A	SNP	USP34	ENST00000398571	human	ensembl	74_37	-1	known	silent	c.1581	p.S527	1.000	NULL	pfam_Peptidase_C19/C67,superfamily_ARM-type_fold,pfscan_Peptidase_C19/C67	-	no_errors	USP34	HGNC	ENSG00000115464				66	0	0	40	6	13.0435
ADD2	0	genome.wustl.edu	37	2	70905913	70905913	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	2	70905913	70905913	T	C	SNP	ADD2	ENST00000264436	human	ensembl	74_37	-1	known	missense	c.1306	p.T436A	1.000	NULL	pfam_Aldolase_II/adducin_N,superfamily_Aldolase_II/adducin_N	-	no_errors	ADD2	HGNC	ENSG00000075340				159	1	0.625	163	9	5.23256
PRADC1	0	genome.wustl.edu	37	2	73456645	73456645	+	Silent	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	2	73456645	73456645	G	A	SNP	PRADC1	ENST00000258083	human	ensembl	74_37	-1	known	silent	c.222	p.C74	0.993	pfam_Protease-assoc_domain	pfam_Protease-assoc_domain	-	no_errors	PRADC1	HGNC	ENSG00000135617				128	0	0	125	7	5.30303
FBXO41	0	genome.wustl.edu	37	2	73492583	73492583	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	2	73492583	73492583	C	T	SNP	FBXO41	ENST00000295133	human	ensembl	74_37	-1	known	missense	c.1574	p.R525H	1.000	NULL	superfamily_F-box_dom	-	no_errors	FBXO41	HGNC	ENSG00000163013				15	0	0	9	5	35.7143
ALMS1	0	genome.wustl.edu	37	2	73679208	73679208	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	2	73679208	73679208	C	A	SNP	ALMS1	ENST00000264448	human	ensembl	74_37	+1	known	missense	c.5551	p.P1851T	0.000	NULL	NULL	-	no_errors	ALMS1	HGNC	ENSG00000116127				76	0	0	59	13	18.0556
DCTN1	0	genome.wustl.edu	37	2	74597749	74597749	+	Silent	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	2	74597749	74597749	C	T	SNP	DCTN1	ENST00000361874	human	ensembl	74_37	-1	known	silent	c.1047	p.K349	0.998	NULL	pfam_Dynactin,pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,superfamily_Polyketide_synth_docking,superfamily_P-loop_NTPase,pfscan_CAP-Gly_domain	-	no_errors	DCTN1	HGNC	ENSG00000204843				114	0	0	76	29	27.619
LRRTM4	0	genome.wustl.edu	37	2	77746782	77746782	+	Silent	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	2	77746782	77746782	G	A	SNP	LRRTM4	ENST00000409911	human	ensembl	74_37	-1	known	silent	c.216	p.N72	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRTM4	HGNC	ENSG00000176204				94	0	0	58	28	32.5581
TEKT4	0	genome.wustl.edu	37	2	95537568	95537568	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	2	95537568	95537568	C	T	SNP	TEKT4	ENST00000295201	human	ensembl	74_37	+1	known	missense	c.244	p.R82C	1.000	pfam_Tektin	pfam_Tektin,prints_Tektin	-	no_errors	TEKT4	HGNC	ENSG00000163060				21	0	0	9	5	35.7143
ZAP70	0	genome.wustl.edu	37	2	98354293	98354293	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	2	98354293	98354293	G	A	SNP	ZAP70	ENST00000264972	human	ensembl	74_37	+1	known	missense	c.1556	p.R519H	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_SYK/ZAP70,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,superfamily_Kinase-like_dom,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_SYK/ZAP70,pfscan_SH2,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	ZAP70	HGNC	ENSG00000115085				204	0	0	156	46	22.7723
ESF1	0	genome.wustl.edu	37	20	13763472	13763472	+	Silent	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	20	13763472	13763472	G	A	SNP	ESF1	ENST00000202816	human	ensembl	74_37	-1	known	silent	c.315	p.I105	0.023	NULL	pfam_NUC153	-	no_errors	ESF1	HGNC	ENSG00000089048				16	0	0	4	3	42.8571
NAA20	0	genome.wustl.edu	37	20	20007472	20007472	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	20	20007472	20007472	G	A	SNP	NAA20	ENST00000334982	human	ensembl	74_37	+1	known	missense	c.214	p.G72R	1.000	pfam_GNAT_dom,pfam_FR47,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	pfam_GNAT_dom,pfam_FR47,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	-	no_errors	NAA20	HGNC	ENSG00000173418				159	0	0	107	33	23.5714
GZF1	0	genome.wustl.edu	37	20	23345920	23345920	+	Silent	SNP	A	A	G			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	20	23345920	23345920	A	G	SNP	GZF1	ENST00000338121	human	ensembl	74_37	+1	known	silent	c.900	p.E300	0.000	NULL	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	GZF1	HGNC	ENSG00000125812				45	0	0	25	9	26.4706
TMC2	0	genome.wustl.edu	37	20	2575544	2575544	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	20	2575544	2575544	G	A	SNP	TMC2	ENST00000358864	human	ensembl	74_37	+1	known	missense	c.1007	p.R336Q	1.000	NULL	pfam_TMC	-	no_errors	TMC2	HGNC	ENSG00000149488				90	0	0	86	6	6.52174
PTPRA	0	genome.wustl.edu	37	20	3001963	3001963	+	Silent	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	20	3001963	3001963	C	T	SNP	PTPRA	ENST00000425918	human	ensembl	74_37	+1	known	silent	c.1083	p.C361	1.000	pirsf_Tyr_Pase_rcpt_a/e-type,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pirsf_Tyr_Pase_rcpt_a/e-type,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRA	HGNC	ENSG00000132670				93	0	0	63	16	20.2532
CBFA2T2	0	genome.wustl.edu	37	20	32232360	32232360	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	20	32232360	32232360	G	A	SNP	CBFA2T2	ENST00000346541	human	ensembl	74_37	+1	known	missense	c.1723	p.V575M	0.244	prints_MTGR1	pfam_NHR2,pfam_TAFH_NHR1,pfam_Znf_MYND,smart_TAFH_NHR1,pfscan_TAFH_NHR1,pfscan_Znf_MYND,prints_ETO,prints_MTGR1	-	no_errors	CBFA2T2	HGNC	ENSG00000078699				84	0	0	90	5	5.26316
EIF6	0	genome.wustl.edu	37	20	33868473	33868473	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	20	33868473	33868473	T	C	SNP	EIF6	ENST00000374436	human	ensembl	74_37	-1	known	missense	c.353	p.H118R	1.000	pfam_eIF6,smart_eIF6,pirsf_eIF6,tigrfam_eIF6	pfam_eIF6,smart_eIF6,pirsf_eIF6,tigrfam_eIF6	-	no_errors	EIF6	HGNC	ENSG00000242372				23	0	0	26	2	7.14286
CEP250	0	genome.wustl.edu	37	20	34067839	34067839	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	20	34067839	34067839	C	T	SNP	CEP250	ENST00000397527	human	ensembl	74_37	+1	known	missense	c.2455	p.R819W	0.829	NULL	superfamily_Prefoldin	-	no_errors	CEP250	HGNC	ENSG00000126001				92	0	0	60	25	29.4118
ATRN	0	genome.wustl.edu	37	20	3557644	3557644	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	20	3557644	3557644	G	A	SNP	ATRN	ENST00000262919	human	ensembl	74_37	+1	known	missense	c.2353	p.E785K	1.000	smart_Plexin-like_fold	pfam_Kelch_1,pfam_Plexin_repeat,pfam_CUB_dom,superfamily_C-type_lectin_fold,superfamily_CUB_dom,superfamily_Plexin-like_fold,smart_EG-like_dom,smart_CUB_dom,smart_Plexin-like_fold,smart_C-type_lectin,smart_EGF_laminin,pfscan_CUB_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_C-type_lectin	-	no_errors	ATRN	HGNC	ENSG00000088812				69	0	0	46	21	31.3433
ATRN	0	genome.wustl.edu	37	20	3562942	3562942	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	20	3562942	3562942	G	A	SNP	ATRN	ENST00000262919	human	ensembl	74_37	+1	known	missense	c.2705	p.R902Q	0.983	superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_Kelch_1,pfam_Plexin_repeat,pfam_CUB_dom,superfamily_C-type_lectin_fold,superfamily_CUB_dom,superfamily_Plexin-like_fold,smart_EG-like_dom,smart_CUB_dom,smart_Plexin-like_fold,smart_C-type_lectin,smart_EGF_laminin,pfscan_CUB_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_C-type_lectin	-	no_errors	ATRN	HGNC	ENSG00000088812				93	0	0	62	31	33.3333
SRC	0	genome.wustl.edu	37	20	36024669	36024669	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	20	36024669	36024669	C	A	SNP	SRC	ENST00000360723	human	ensembl	74_37	+1	known	missense	c.676	p.R226S	1.000	pfam_SH2,smart_SH2,pfscan_SH2	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,prints_SH3_domain	-	no_errors	SRC	HGNC	ENSG00000197122				93	0	0	62	29	31.8681
SIGLEC1	0	genome.wustl.edu	37	20	3675116	3675116	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	20	3675116	3675116	A	T	SNP	SIGLEC1	ENST00000344754	human	ensembl	74_37	-1	known	missense	c.3008	p.L1003H	0.992	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	SIGLEC1	HGNC	ENSG00000088827				9	0	0	5	3	37.5
ACTR5	0	genome.wustl.edu	37	20	37384640	37384640	+	Silent	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	20	37384640	37384640	G	A	SNP	ACTR5	ENST00000243903	human	ensembl	74_37	+1	known	silent	c.1134	p.A378	0.033	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,smart_Actin-related	-	no_errors	ACTR5	HGNC	ENSG00000101442				26	0	0	23	10	30.303
CHD6	0	genome.wustl.edu	37	20	40112160	40112160	+	Splice_Site	SNP	C	C	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	20	40112160	40112160	C	A	SNP	CHD6	ENST00000373233	human	ensembl	74_37	-1	known	splice_site	c.2258-1	e15-1	1.000	-	-	-	no_errors	CHD6	HGNC	ENSG00000124177				14	0	0	9	5	35.7143
OSER1	0	genome.wustl.edu	37	20	42825845	42825845	+	Silent	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	20	42825845	42825845	G	A	SNP	OSER1	ENST00000255174	human	ensembl	74_37	-1	known	silent	c.726	p.H242	0.036	NULL	pfam_DUF776	-	no_errors	OSER1	HGNC	ENSG00000132823				82	0	0	45	24	34.7826
SEMG2	0	genome.wustl.edu	37	20	43850895	43850895	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	20	43850895	43850895	C	T	SNP	SEMG2	ENST00000372769	human	ensembl	74_37	+1	known	missense	c.622	p.R208C	0.000	pfam_Semenogelin	pfam_Semenogelin	-	no_errors	SEMG2	HGNC	ENSG00000124157				83	0	0	43	18	29.5082
MATN4	0	genome.wustl.edu	37	20	43926884	43926884	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	20	43926884	43926884	C	T	SNP	MATN4	ENST00000372754	human	ensembl	74_37	-1	known	missense	c.1475	p.R492H	0.997	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_EGF-like_Ca-bd_dom,pfam_Matrilin_coiled-coil_trimer,smart_VWF_A,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_VWF_A	-	no_errors	MATN4	HGNC	ENSG00000124159				84	0	0	65	5	7.14286
PREX1	0	genome.wustl.edu	37	20	47253137	47253137	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	20	47253137	47253137	G	A	SNP	PREX1	ENST00000371941	human	ensembl	74_37	-1	known	missense	c.4031	p.A1344V	0.988	NULL	pfam_DH-domain,pfam_DEP_dom,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX1	HGNC	ENSG00000124126				25	0	0	15	7	31.8182
STAU1	0	genome.wustl.edu	37	20	47741116	47741116	+	Silent	SNP	C	C	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	20	47741116	47741116	C	A	SNP	STAU1	ENST00000371856	human	ensembl	74_37	-1	known	silent	c.618	p.R206	1.000	pfam_dsRNA-bd_dom,smart_dsRNA-bd_dom,pfscan_dsRNA-bd_dom	pfam_dsRNA-bd_dom,smart_dsRNA-bd_dom,pfscan_dsRNA-bd_dom	-	no_errors	STAU1	HGNC	ENSG00000124214				76	0	0	43	22	33.8462
ZNF217	0	genome.wustl.edu	37	20	52193262	52193262	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	20	52193262	52193262	C	T	SNP	ZNF217	ENST00000302342	human	ensembl	74_37	-1	known	missense	c.2041	p.D681N	0.133	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF217	HGNC	ENSG00000171940				200	0	0	138	48	25.8065
TFAP2C	0	genome.wustl.edu	37	20	55206438	55206438	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	20	55206438	55206438	T	C	SNP	TFAP2C	ENST00000201031	human	ensembl	74_37	+1	known	missense	c.226	p.Y76H	1.000	NULL	pfam_TF_AP2_C,prints_TF_AP2_C,prints_TF_AP2_gamma	-	no_errors	TFAP2C	HGNC	ENSG00000087510				28	0	0	22	3	12
LAMA5	0	genome.wustl.edu	37	20	60913608	60913608	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	20	60913608	60913608	C	T	SNP	LAMA5	ENST00000252999	human	ensembl	74_37	-1	known	missense	c.1534	p.V512M	0.000	pfam_EGF_laminin,smart_EGF_laminin,smart_EG-like_dom,pfscan_EGF_laminin	pfam_EGF_laminin,pfam_Laminin_I,pfam_Laminin_G,pfam_Laminin_N,pfam_Laminin_II,pfam_Laminin_B_type_IV,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N,pfscan_TNFR/NGFR_Cys_rich_reg	-	no_errors	LAMA5	HGNC	ENSG00000130702				16	0	0	12	6	33.3333
TPD52L2	0	genome.wustl.edu	37	20	62500698	62500698	+	Silent	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	20	62500698	62500698	G	A	SNP	TPD52L2	ENST00000217121	human	ensembl	74_37	+1	known	silent	c.69	p.T23	0.002	NULL	pfam_TPD52	-	no_errors	TPD52L2	HGNC	ENSG00000101150				112	0	0	78	29	27.1028
MYT1	0	genome.wustl.edu	37	20	62848507	62848507	+	Silent	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	20	62848507	62848507	G	A	SNP	MYT1	ENST00000536311	human	ensembl	74_37	+1	known	silent	c.1719	p.L573	1.000	pfam_Myelin_TF	pfam_Myelin_TF,pfam_Znf_C2HC	-	no_errors	MYT1	HGNC	ENSG00000196132				92	0	0	57	33	36.6667
PLCB1	0	genome.wustl.edu	37	20	8639224	8639224	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	20	8639224	8639224	G	T	SNP	PLCB1	ENST00000338037	human	ensembl	74_37	+1	known	missense	c.735	p.M245I	1.000	pirsf_PLC-beta,pfam_PLipase_C_EF-hand-like	pirsf_PLC-beta,pfam_PLC-beta_C,pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,prints_Pinositol_PLipase_C,pfscan_C2_dom,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCB1	HGNC	ENSG00000182621				103	0	0	50	18	26.4706
BAGE2	0	genome.wustl.edu	37	21	11039011	11039011	+	RNA	SNP	T	T	C			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	21	11039011	11039011	T	C	SNP	BAGE2	ENST00000470054	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.737	-	-	-	no_errors	BAGE2	HGNC	ENSG00000187172				498	1	0.200401	397	25	5.92417
BAGE2	0	genome.wustl.edu	37	21	11049460	11049460	+	RNA	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	21	11049460	11049460	G	A	SNP	BAGE2	ENST00000470054	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	BAGE2	HGNC	ENSG00000187172				148	0	0	132	7	5.03597
SAMSN1	0	genome.wustl.edu	37	21	15882784	15882784	+	Splice_Site	SNP	T	T	C			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	21	15882784	15882784	T	C	SNP	SAMSN1	ENST00000400566	human	ensembl	74_37	-1	known	splice_site	c.410-2	e5-2	1.000	-	-	-	no_errors	SAMSN1	HGNC	ENSG00000155307				79	0	0	59	21	26.25
GABPA	0	genome.wustl.edu	37	21	27137089	27137089	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	21	27137089	27137089	G	A	SNP	GABPA	ENST00000354828	human	ensembl	74_37	+1	known	missense	c.1127	p.R376H	1.000	pfam_Ets_dom,smart_Ets_dom,pirsf_TF_GA-bd_asu,pfscan_Ets_dom,prints_Ets_dom	pfam_GABP_asu_N,pfam_Ets_dom,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets_dom,pirsf_TF_GA-bd_asu,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	GABPA	HGNC	ENSG00000154727				63	0	0	29	15	34.0909
LTN1	0	genome.wustl.edu	37	21	30325581	30325581	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	21	30325581	30325581	A	G	SNP	LTN1	ENST00000389194	human	ensembl	74_37	-1	known	missense	c.3335	p.V1112A	0.190	NULL	pfam_Znf_C3HC4_RING-type,superfamily_ARM-type_fold,smart_Znf_RING-CH,pfscan_Znf_RING	-	no_errors	LTN1	HGNC	ENSG00000198862				69	0	0	44	17	27.8689
BRWD1	0	genome.wustl.edu	37	21	40587277	40587277	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	21	40587277	40587277	G	A	SNP	BRWD1	ENST00000333229	human	ensembl	74_37	-1	known	missense	c.3671	p.A1224V	1.000	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain	pfam_WD40_repeat,pfam_Bromodomain,superfamily_WD40_repeat_dom,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Bromodomain	-	no_errors	BRWD1	HGNC	ENSG00000185658				59	0	0	29	3	9.375
CBS	0	genome.wustl.edu	37	21	44488617	44488617	+	Splice_Site	SNP	A	A	G			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	21	44488617	44488617	A	G	SNP	CBS	ENST00000398168	human	ensembl	74_37	-1	known	splice_site	c.316+2	e2+2	1.000	-	-	-	no_errors	CBS	HGNC	ENSG00000160200				80	0	0	34	17	33.3333
ICOSLG	0	genome.wustl.edu	37	21	45657063	45657063	+	Silent	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	21	45657063	45657063	G	A	SNP	ICOSLG	ENST00000344330	human	ensembl	74_37	-1	known	silent	c.93	p.S31	0.044	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_CD80_C2-set,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	ICOSLG	HGNC	ENSG00000160223				69	0	0	41	20	32.7869
DIP2A	0	genome.wustl.edu	37	21	47987520	47987520	+	Silent	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	21	47987520	47987520	C	T	SNP	DIP2A	ENST00000318711	human	ensembl	74_37	+1	known	silent	c.4704	p.V1568	0.894	NULL	pfam_AMP-dep_Synth/Lig,pfam_DMAP1-bd	-	no_errors	DIP2A	HGNC	ENSG00000160305				91	0	0	69	21	23.3333
TPTEP1	0	genome.wustl.edu	37	22	17178529	17178529	+	RNA	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	22	17178529	17178529	C	T	SNP	TPTEP1	ENST00000558085	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.093	-	-	-	no_errors	TPTEP1	HGNC	ENSG00000100181				67	0	0	54	13	19.403
ENSG00000161103	0	genome.wustl.edu	37	22	18846040	18846040	+	RNA	SNP	T	T	C			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	22	18846040	18846040	T	C	SNP	ENSG00000161103	ENST00000412938	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	AC008132.13	Clone_based_vega_gene	ENSG00000161103				70	0	0	46	8	14.8148
SCARF2	0	genome.wustl.edu	37	22	20783851	20783851	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	22	20783851	20783851	C	T	SNP	SCARF2	ENST00000405555	human	ensembl	74_37	-1	known	missense	c.1396	p.A466T	1.000	NULL	pfam_EGF_laminin,superfamily_Growth_fac_rcpt_N_dom,smart_EGF_laminin,smart_EG-like_dom,pfscan_EG-like_dom	-	no_errors	SCARF2	HGNC	ENSG00000244486				47	0	0	26	11	29.7297
PPIL2	0	genome.wustl.edu	37	22	22035655	22035655	+	Silent	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	22	22035655	22035655	G	A	SNP	PPIL2	ENST00000412327	human	ensembl	74_37	+1	known	silent	c.363	p.T121	0.789	pfam_Rtf2_RING-finger	pfam_Cyclophilin-like_PPIase_dom,pfam_Rtf2_RING-finger,superfamily_Cyclophilin-like_PPIase_dom,smart_Ubox_domain,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	PPIL2	HGNC	ENSG00000100023				83	0	0	50	24	32.4324
GNAZ	0	genome.wustl.edu	37	22	23437850	23437850	+	RNA	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	22	23437850	23437850	G	A	SNP	GNAZ	ENST00000492538	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GNAZ	HGNC	ENSG00000128266				15	0	0	15	3	16.6667
CABIN1	0	genome.wustl.edu	37	22	24563190	24563190	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	22	24563190	24563190	A	G	SNP	CABIN1	ENST00000263119	human	ensembl	74_37	+1	known	missense	c.5591	p.Y1864C	1.000	NULL	pfam_MEF2_binding,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	CABIN1	HGNC	ENSG00000099991				35	0	0	24	6	20
SEZ6L	0	genome.wustl.edu	37	22	26743798	26743798	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	22	26743798	26743798	G	A	SNP	SEZ6L	ENST00000248933	human	ensembl	74_37	+1	known	missense	c.2326	p.G776S	1.000	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	SEZ6L	HGNC	ENSG00000100095				103	0	0	63	28	30.7692
KREMEN1	0	genome.wustl.edu	37	22	29534746	29534746	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	22	29534746	29534746	A	G	SNP	KREMEN1	ENST00000327813	human	ensembl	74_37	+1	known	missense	c.1099	p.S367G	1.000	pirsf_Kremen	pirsf_Kremen,pfam_Kringle,pfam_WSC_carb-bd,pfam_CUB_dom,superfamily_Kringle-like,superfamily_CUB_dom,superfamily_Scorpion_toxin-like,smart_Kringle,smart_WSC_carb-bd_subgr,smart_CUB_dom,pfscan_CUB_dom,pfscan_Kringle,pfscan_WSC_carb-bd	-	no_errors	KREMEN1	HGNC	ENSG00000183762				106	0	0	86	7	7.52688
THOC5	0	genome.wustl.edu	37	22	29940500	29940500	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	22	29940500	29940500	C	A	SNP	THOC5	ENST00000397871	human	ensembl	74_37	-1	known	missense	c.189	p.Q63H	0.997	NULL	pfam_THO_Thoc5	-	no_errors	THOC5	HGNC	ENSG00000100296				134	0	0	82	49	37.4046
C22orf42	0	genome.wustl.edu	37	22	32546324	32546324	+	Silent	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	22	32546324	32546324	G	A	SNP	C22orf42	ENST00000382097	human	ensembl	74_37	-1	known	silent	c.636	p.D212	0.005	NULL	NULL	-	no_errors	C22orf42	HGNC	ENSG00000205856				144	0	0	95	39	29.1045
MYH9	0	genome.wustl.edu	37	22	36684413	36684413	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	22	36684413	36684413	G	A	SNP	MYH9	ENST00000216181	human	ensembl	74_37	-1	known	missense	c.4817	p.S1606L	0.999	pfam_Myosin_tail	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Regulat_G_prot_signal_superfam,superfamily_Prefoldin,superfamily_Myosin_S1_N,superfamily_STAT_TF_coiled-coil,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH9	HGNC	ENSG00000100345				81	0	0	61	25	29.0698
MYH9	0	genome.wustl.edu	37	22	36693034	36693034	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	22	36693034	36693034	G	A	SNP	MYH9	ENST00000216181	human	ensembl	74_37	-1	known	nonsense	c.3127	p.R1043*	1.000	superfamily_Prefoldin	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Regulat_G_prot_signal_superfam,superfamily_Prefoldin,superfamily_Myosin_S1_N,superfamily_STAT_TF_coiled-coil,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH9	HGNC	ENSG00000100345				44	0	0	30	20	40
CSF2RB	0	genome.wustl.edu	37	22	37332596	37332596	+	Silent	SNP	G	G	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	22	37332596	37332596	G	T	SNP	CSF2RB	ENST00000262825	human	ensembl	74_37	+1	known	silent	c.1488	p.G496	0.000	pirsf_IL3_rcpt_beta	pirsf_IL3_rcpt_beta,pfam_Fibronectin_type3,pfam_IL-6_rcpt_alpha-bd,pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	CSF2RB	HGNC	ENSG00000100368				55	0	0	32	14	30.4348
IL2RB	0	genome.wustl.edu	37	22	37524250	37524250	+	Silent	SNP	G	G	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	22	37524250	37524250	G	T	SNP	IL2RB	ENST00000216223	human	ensembl	74_37	-1	known	silent	c.1542	p.S514	0.000	NULL	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL2RB	HGNC	ENSG00000100385				59	0	0	43	12	21.8182
NPTXR	0	genome.wustl.edu	37	22	39222674	39222674	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	22	39222674	39222674	C	T	SNP	NPTXR	ENST00000333039	human	ensembl	74_37	-1	known	missense	c.929	p.R310Q	1.000	pfam_Pentaxin,superfamily_ConA-like_lec_gl_sf,smart_Pentaxin	pfam_Pentaxin,superfamily_ConA-like_lec_gl_sf,smart_Pentaxin,prints_Pentaxin	-	no_errors	NPTXR	HGNC	ENSG00000221890				56	0	0	37	21	36.2069
PDGFB	0	genome.wustl.edu	37	22	39621798	39621798	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	22	39621798	39621798	G	T	SNP	PDGFB	ENST00000331163	human	ensembl	74_37	-1	known	missense	c.656	p.P219H	1.000	NULL	pfam_PDGF/VEGF_dom,pfam_PDGF_N,smart_PDGF/VEGF_dom,pfscan_PDGF/VEGF_dom	-	no_errors	PDGFB	HGNC	ENSG00000100311				33	0	0	12	12	50
PDGFB	0	genome.wustl.edu	37	22	39631827	39631827	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	22	39631827	39631827	C	T	SNP	PDGFB	ENST00000331163	human	ensembl	74_37	-1	known	missense	c.116	p.R39H	1.000	pfam_PDGF_N	pfam_PDGF/VEGF_dom,pfam_PDGF_N,smart_PDGF/VEGF_dom,pfscan_PDGF/VEGF_dom	-	no_errors	PDGFB	HGNC	ENSG00000100311				43	0	0	29	10	25.641
ENTHD1	0	genome.wustl.edu	37	22	40140075	40140075	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	22	40140075	40140075	A	G	SNP	ENTHD1	ENST00000325157	human	ensembl	74_37	-1	known	missense	c.1433	p.V478A	0.000	NULL	pfam_Epsin_dom_N,pfam_VHS,superfamily_ENTH_VHS,smart_Epsin-like_N,pfscan_Epsin-like_N	-	no_errors	ENTHD1	HGNC	ENSG00000176177				65	0	0	48	4	7.69231
TTLL1	0	genome.wustl.edu	37	22	43442449	43442449	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	22	43442449	43442449	G	A	SNP	TTLL1	ENST00000266254	human	ensembl	74_37	-1	known	missense	c.1109	p.P370L	1.000	NULL	pfam_TTL/TTLL_fam	-	no_errors	TTLL1	HGNC	ENSG00000100271				235	0	0	220	21	8.71369
KIAA0930	0	genome.wustl.edu	37	22	45595911	45595911	+	Silent	SNP	G	G	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	22	45595911	45595911	G	T	SNP	KIAA0930	ENST00000251993	human	ensembl	74_37	-1	known	silent	c.873	p.T291	0.995	NULL	pfam_DUF2045	-	no_errors	KIAA0930	HGNC	ENSG00000100364				38	0	0	47	5	9.61538
PKDREJ	0	genome.wustl.edu	37	22	46657156	46657156	+	Silent	SNP	C	C	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	22	46657156	46657156	C	A	SNP	PKDREJ	ENST00000253255	human	ensembl	74_37	-1	known	silent	c.2064	p.V688	0.000	pfam_PKD/REJ-like,pfscan_REJ-like	pfam_PKD1_2_channel,pfam_PKD/REJ-like,pfam_PLAT/LH2_dom,pfam_Ion_trans_dom,superfamily_Lipase_LipOase,smart_GPS_dom,smart_PLAT/LH2_dom,pfscan_PLAT/LH2_dom,pfscan_REJ-like,prints_PKD_2	-	no_errors	PKDREJ	HGNC	ENSG00000130943				97	0	0	90	15	14.2857
CELSR1	0	genome.wustl.edu	37	22	46760632	46760632	+	Silent	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	22	46760632	46760632	C	T	SNP	CELSR1	ENST00000262738	human	ensembl	74_37	-1	known	silent	c.8556	p.G2852	0.683	NULL	pfam_Cadherin,pfam_DUF3497,pfam_Laminin_G,pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EG-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR1	HGNC	ENSG00000075275				22	0	0	22	4	15.3846
TUBGCP6	0	genome.wustl.edu	37	22	50660233	50660233	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	22	50660233	50660233	G	A	SNP	TUBGCP6	ENST00000248846	human	ensembl	74_37	-1	known	missense	c.2555	p.S852L	0.000	pfam_TUBGCP	pfam_TUBGCP	-	no_errors	TUBGCP6	HGNC	ENSG00000128159				46	0	0	30	17	36.1702
PVRL3	0	genome.wustl.edu	37	3	110831167	110831167	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	3	110831167	110831167	G	A	SNP	PVRL3	ENST00000485303	human	ensembl	74_37	+1	known	missense	c.451	p.V151I	1.000	pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_CD80_C2-set,pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	PVRL3	HGNC	ENSG00000177707				119	0	0	60	16	21.0526
HCLS1	0	genome.wustl.edu	37	3	121350739	121350739	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	3	121350739	121350739	C	T	SNP	HCLS1	ENST00000314583	human	ensembl	74_37	-1	known	missense	c.1415	p.G472D	1.000	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_p67phox	pfam_Hs1_Cortactin,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_Hs1_Cortactin,pfscan_SH3_domain,prints_SH3_domain,prints_p67phox	-	no_errors	HCLS1	HGNC	ENSG00000180353				80	0	0	55	26	32.0988
CASR	0	genome.wustl.edu	37	3	122002860	122002860	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	3	122002860	122002860	A	G	SNP	CASR	ENST00000498619	human	ensembl	74_37	+1	known	missense	c.2089	p.S697G	1.000	pfam_GPCR_3_C,pfscan_GPCR_3_C,prints_GPCR_3	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,superfamily_Growth_fac_rcpt_N_dom,pfscan_GPCR_3_C,prints_GPCR_3	-	no_errors	CASR	HGNC	ENSG00000036828				70	0	0	63	4	5.97015
DTX3L	0	genome.wustl.edu	37	3	122284875	122284875	+	Silent	SNP	T	T	C			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	3	122284875	122284875	T	C	SNP	DTX3L	ENST00000296161	human	ensembl	74_37	+1	known	silent	c.357	p.H119	0.000	NULL	smart_Znf_RING,pfscan_Znf_RING	-	no_errors	DTX3L	HGNC	ENSG00000163840				55	0	0	52	4	7.14286
PARP14	0	genome.wustl.edu	37	3	122422609	122422609	+	Silent	SNP	C	C	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	3	122422609	122422609	C	A	SNP	PARP14	ENST00000474629	human	ensembl	74_37	+1	known	silent	c.3102	p.S1034	0.058	smart_Macro_dom,pfscan_Macro_dom	pfam_Macro_dom,pfam_Poly(ADP-ribose)pol_cat_dom,pfam_WWE-dom,smart_Macro_dom,pfscan_Macro_dom,pfscan_WWE-dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP14	HGNC	ENSG00000173193				22	0	0	8	2	20
RYK	0	genome.wustl.edu	37	3	133878114	133878114	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	3	133878114	133878114	C	T	SNP	RYK	ENST00000427044	human	ensembl	74_37	-1	known	missense	c.1112	p.R371Q	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	RYK	HGNC	ENSG00000163785				35	0	0	25	9	26.4706
AMOTL2	0	genome.wustl.edu	37	3	134089854	134089854	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	3	134089854	134089854	C	T	SNP	AMOTL2	ENST00000249883	human	ensembl	74_37	-1	known	missense	c.422	p.R141Q	0.000	NULL	pfam_Angiomotin_C,prints_Angiomotin	-	no_errors	AMOTL2	HGNC	ENSG00000114019				9	0	0	3	3	50
COMMD2	0	genome.wustl.edu	37	3	149459487	149459487	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	3	149459487	149459487	T	C	SNP	COMMD2	ENST00000473414	human	ensembl	74_37	-1	known	missense	c.421	p.R141G	1.000	pfam_HCaRG	pfam_HCaRG	-	no_errors	COMMD2	HGNC	ENSG00000114744				112	0	0	73	30	29.1262
P2RY1	0	genome.wustl.edu	37	3	152554180	152554180	+	Silent	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	3	152554180	152554180	C	T	SNP	P2RY1	ENST00000305097	human	ensembl	74_37	+1	known	silent	c.609	p.Y203	0.467	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_P2Y1_rcpt,prints_GPCR_Rhodpsn	-	no_errors	P2RY1	HGNC	ENSG00000169860				130	0	0	90	23	20.354
SH3BP5-AS1	0	genome.wustl.edu	37	3	15297933	15297933	+	RNA	SNP	A	A	G			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	3	15297933	15297933	A	G	SNP	SH3BP5-AS1	ENST00000420195	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	SH3BP5-AS1	HGNC	ENSG00000224660				32	0	0	26	2	7.14286
SLITRK3	0	genome.wustl.edu	37	3	164906366	164906366	+	Silent	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	3	164906366	164906366	G	A	SNP	SLITRK3	ENST00000241274	human	ensembl	74_37	-1	known	silent	c.2253	p.C751	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK3	HGNC	ENSG00000121871				100	0	0	40	11	21.5686
BCHE	0	genome.wustl.edu	37	3	165548346	165548346	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	3	165548346	165548346	T	G	SNP	BCHE	ENST00000264381	human	ensembl	74_37	-1	known	missense	c.476	p.K159T	0.989	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Cholinesterase	pfam_CarbesteraseB,pfam_AChE_tetra,pfam_AB_hydrolase_3,prints_Cholinesterase	-	no_errors	BCHE	HGNC	ENSG00000114200				62	0	0	25	20	44.4444
PLD1	0	genome.wustl.edu	37	3	171330108	171330108	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	3	171330108	171330108	G	A	SNP	PLD1	ENST00000351298	human	ensembl	74_37	-1	known	missense	c.2843	p.A948V	1.000	pirsf_PLipase_D_euk	pfam_Phox,pfam_PLipase_D/transphosphatidylase,pfam_Pleckstrin_homology,superfamily_Phox,smart_Phox,smart_Pleckstrin_homology,smart_PLipase_D/transphosphatidylase,pirsf_PLipase_D_euk,pfscan_Phox,pfscan_PLipase_D/transphosphatidylase	-	no_errors	PLD1	HGNC	ENSG00000075651				90	0	0	39	38	49.3506
ACTL6A	0	genome.wustl.edu	37	3	179305773	179305773	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	3	179305773	179305773	A	C	SNP	ACTL6A	ENST00000429709	human	ensembl	74_37	+1	known	missense	c.1265	p.Q422P	1.000	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,smart_Actin-related,prints_Actin-related	-	no_errors	ACTL6A	HGNC	ENSG00000136518				46	0	0	20	6	23.0769
KLHL6	0	genome.wustl.edu	37	3	183273234	183273234	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	3	183273234	183273234	C	T	SNP	KLHL6	ENST00000341319	human	ensembl	74_37	-1	known	missense	c.208	p.A70T	0.376	pfam_BTB_POZ,superfamily_BTB/POZ_fold,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL6	HGNC	ENSG00000172578				134	0	0	90	58	39.1892
SATB1	0	genome.wustl.edu	37	3	18391065	18391065	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	3	18391065	18391065	G	A	SNP	SATB1	ENST00000417717	human	ensembl	74_37	-1	known	missense	c.1985	p.T662M	1.000	NULL	pfam_Hmoeo_CUT,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Hmoeo_CUT	-	no_errors	SATB1	HGNC	ENSG00000182568				55	0	0	27	12	30.7692
SNORD2	0	genome.wustl.edu	37	3	186502615	186502615	+	RNA	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	3	186502615	186502615	C	T	SNP	SNORD2	ENST00000459163	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SNORD2	HGNC	ENSG00000238942				119	0	0	64	31	32.6316
LPP	0	genome.wustl.edu	37	3	188242523	188242523	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	3	188242523	188242523	G	A	SNP	LPP	ENST00000312675	human	ensembl	74_37	+1	known	missense	c.377	p.S126N	1.000	NULL	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	LPP	HGNC	ENSG00000145012				152	1	0.653595	106	43	28.8591
CCDC50	0	genome.wustl.edu	37	3	191097971	191097971	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	3	191097971	191097971	G	T	SNP	CCDC50	ENST00000392456	human	ensembl	74_37	+1	known	nonsense	c.1000	p.E334*	0.948	NULL	NULL	-	no_errors	CCDC50	HGNC	ENSG00000152492				32	0	0	26	9	25.7143
KCNH8	0	genome.wustl.edu	37	3	19389429	19389429	+	Silent	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	3	19389429	19389429	C	T	SNP	KCNH8	ENST00000328405	human	ensembl	74_37	+1	known	silent	c.783	p.D261	1.000	pfam_Ion_trans_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_2pore_dom_K_chnl_dom,pfam_PAS_fold_3,pfam_PAS_4,pfam_PAS_fold,superfamily_cNMP-bd-like,superfamily_PAS,superfamily_tRNA-bd_arm,smart_PAC,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,pfscan_PAS-assoc_C,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ELK,prints_K_chnl_volt-dep_ERG,prints_K_chnl_volt-dep_EAG,tigrfam_PAS	-	no_errors	KCNH8	HGNC	ENSG00000183960				97	0	0	55	22	28.5714
KCNH8	0	genome.wustl.edu	37	3	19554720	19554720	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	3	19554720	19554720	G	T	SNP	KCNH8	ENST00000328405	human	ensembl	74_37	+1	known	nonsense	c.2338	p.E780*	0.988	NULL	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_2pore_dom_K_chnl_dom,pfam_PAS_fold_3,pfam_PAS_4,pfam_PAS_fold,superfamily_cNMP-bd-like,superfamily_PAS,superfamily_tRNA-bd_arm,smart_PAC,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,pfscan_PAS-assoc_C,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ELK,prints_K_chnl_volt-dep_ERG,prints_K_chnl_volt-dep_EAG,tigrfam_PAS	-	no_errors	KCNH8	HGNC	ENSG00000183960				82	0	0	52	29	35.8025
VILL	0	genome.wustl.edu	37	3	38045884	38045884	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	3	38045884	38045884	G	A	SNP	VILL	ENST00000283713	human	ensembl	74_37	+1	known	nonsense	c.1944	p.W648*	1.000	pfam_Gelsolin_dom,smart_Villin/Gelsolin,prints_Villin/Gelsolin	pfam_Gelsolin_dom,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Villin/Gelsolin,smart_Villin_headpiece,pfscan_Villin_headpiece,prints_Villin/Gelsolin	-	no_errors	VILL	HGNC	ENSG00000136059				53	0	0	34	11	24.4444
SCN5A	0	genome.wustl.edu	37	3	38591857	38591857	+	Silent	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	3	38591857	38591857	G	A	SNP	SCN5A	ENST00000333535	human	ensembl	74_37	-1	known	silent	c.6006	p.A2002	0.000	NULL	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,prints_Na_channel_a5su,prints_Na_channel_asu	-	no_errors	SCN5A	HGNC	ENSG00000183873				158	0	0	80	30	27.2727
NKTR	0	genome.wustl.edu	37	3	42674107	42674107	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	3	42674107	42674107	A	G	SNP	NKTR	ENST00000232978	human	ensembl	74_37	+1	known	missense	c.565	p.R189G	1.000	NULL	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	NKTR	HGNC	ENSG00000114857				25	0	0	14	5	26.3158
CDCP1	0	genome.wustl.edu	37	3	45153659	45153659	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	3	45153659	45153659	C	A	SNP	CDCP1	ENST00000296129	human	ensembl	74_37	-1	known	nonsense	c.571	p.G191*	0.997	NULL	superfamily_CUB_dom	-	no_errors	CDCP1	HGNC	ENSG00000163814				106	0	0	109	7	6.03448
LIMD1	0	genome.wustl.edu	37	3	45637136	45637136	+	Silent	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	3	45637136	45637136	C	T	SNP	LIMD1	ENST00000273317	human	ensembl	74_37	+1	known	silent	c.765	p.S255	0.001	NULL	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	LIMD1	HGNC	ENSG00000144791				80	0	0	56	14	20
LTF	0	genome.wustl.edu	37	3	46497878	46497878	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	3	46497878	46497878	G	A	SNP	LTF	ENST00000231751	human	ensembl	74_37	-1	known	missense	c.218	p.A73V	0.912	pfam_Transferrin_fam,smart_Transferrin_fam,pirsf_Transferrin,prints_Transferrin_fam	pfam_Transferrin_fam,smart_Transferrin_fam,pirsf_Transferrin,prints_Transferrin_fam	-	no_errors	LTF	HGNC	ENSG00000012223				50	0	0	36	12	25
KIF9	0	genome.wustl.edu	37	3	47277592	47277592	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	3	47277592	47277592	G	A	SNP	KIF9	ENST00000265529	human	ensembl	74_37	-1	known	nonsense	c.2149	p.Q717*	0.986	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF9	HGNC	ENSG00000088727				97	0	0	56	26	31.7073
ITPR1	0	genome.wustl.edu	37	3	4816936	4816936	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	3	4816936	4816936	G	A	SNP	ITPR1	ENST00000302640	human	ensembl	74_37	+1	known	missense	c.5945	p.R1982H	1.000	pfam_RIH_assoc-dom	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR1	HGNC	ENSG00000150995				156	0	0	123	9	6.81818
ZNF589	0	genome.wustl.edu	37	3	48310025	48310025	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	3	48310025	48310025	G	T	SNP	ZNF589	ENST00000354698	human	ensembl	74_37	+1	known	missense	c.844	p.G282W	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Krueppel-associated_box,pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF589	HGNC	ENSG00000164048				94	0	0	62	17	21.519
MANF	0	genome.wustl.edu	37	3	51425198	51425198	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	3	51425198	51425198	G	T	SNP	MANF	ENST00000528157	human	ensembl	74_37	+1	known	missense	c.253	p.A85S	1.000	pfam_Armet_prot,superfamily_Saposin-like	pfam_Armet_prot,superfamily_Saposin-like	-	no_errors	MANF	HGNC	ENSG00000145050				18	0	0	10	2	16.6667
NISCH	0	genome.wustl.edu	37	3	52523363	52523363	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	3	52523363	52523363	G	A	SNP	NISCH	ENST00000345716	human	ensembl	74_37	+1	known	missense	c.3125	p.R1042H	0.004	NULL	pfam_Phox,pfam_Leu-rich_rpt,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	NISCH	HGNC	ENSG00000010322				47	0	0	36	16	30.7692
CACNA1D	0	genome.wustl.edu	37	3	53766961	53766961	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	3	53766961	53766961	G	A	SNP	CACNA1D	ENST00000288139	human	ensembl	74_37	+1	known	missense	c.2653	p.A885T	1.000	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su,prints_LVDCC_a1dsu	-	no_errors	CACNA1D	HGNC	ENSG00000157388				52	0	0	44	4	8.33333
CCDC66	0	genome.wustl.edu	37	3	56651334	56651334	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	3	56651334	56651334	C	T	SNP	CCDC66	ENST00000394672	human	ensembl	74_37	+1	known	nonsense	c.2038	p.Q680*	0.000	NULL	NULL	-	no_errors	CCDC66	HGNC	ENSG00000180376				40	0	0	17	10	37.037
FLNB	0	genome.wustl.edu	37	3	58121816	58121816	+	Silent	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	3	58121816	58121816	C	T	SNP	FLNB	ENST00000295956	human	ensembl	74_37	+1	known	silent	c.4782	p.Y1594	0.635	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNB	HGNC	ENSG00000136068				40	0	0	37	15	28.8462
CNTN3	0	genome.wustl.edu	37	3	74418379	74418379	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	3	74418379	74418379	G	A	SNP	CNTN3	ENST00000263665	human	ensembl	74_37	-1	known	nonsense	c.907	p.R303*	0.738	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CNTN3	HGNC	ENSG00000113805				33	0	0	24	12	33.3333
CHMP2B	0	genome.wustl.edu	37	3	87276641	87276641	+	RNA	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	3	87276641	87276641	C	T	SNP	CHMP2B	ENST00000472024	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	CHMP2B	HGNC	ENSG00000083937				60	0	0	54	8	12.9032
THUMPD3	0	genome.wustl.edu	37	3	9426229	9426229	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	3	9426229	9426229	G	A	SNP	THUMPD3	ENST00000345094	human	ensembl	74_37	+1	known	missense	c.1381	p.V461I	0.011	pfam_RNA_methylase_dom	pfam_RNA_methylase_dom,pfam_THUMP,smart_THUMP,pfscan_THUMP	-	no_errors	THUMPD3	HGNC	ENSG00000134077				253	0	0	167	81	32.6613
OR5K1	0	genome.wustl.edu	37	3	98188635	98188635	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	3	98188635	98188635	G	T	SNP	OR5K1	ENST00000332650	human	ensembl	74_37	+1	known	missense	c.215	p.C72F	0.033	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5K1	HGNC	ENSG00000232382				240	1	0.414938	167	61	26.7544
CXXC4	0	genome.wustl.edu	37	4	105412446	105412446	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	4	105412446	105412446	G	A	SNP	CXXC4	ENST00000394767	human	ensembl	74_37	-1	known	missense	c.514	p.H172Y	1.000	NULL	pfam_Znf_CXXC,pfscan_Znf_CXXC	-	no_errors	CXXC4	HGNC	ENSG00000168772				106	0	0	72	39	35.1351
FAT4	0	genome.wustl.edu	37	4	126370366	126370366	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	4	126370366	126370366	A	G	SNP	FAT4	ENST00000394329	human	ensembl	74_37	+1	known	missense	c.8195	p.D2732G	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159				75	0	0	50	20	28.5714
FAT4	0	genome.wustl.edu	37	4	126412392	126412392	+	Silent	SNP	C	C	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	4	126412392	126412392	C	A	SNP	FAT4	ENST00000394329	human	ensembl	74_37	+1	known	silent	c.14415	p.I4805	1.000	NULL	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159				80	0	0	40	18	31.0345
PCDH10	0	genome.wustl.edu	37	4	134071731	134071731	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	4	134071731	134071731	G	A	SNP	PCDH10	ENST00000264360	human	ensembl	74_37	+1	known	missense	c.436	p.A146T	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH10	HGNC	ENSG00000138650				104	0	0	62	32	34.0426
CC2D2A	0	genome.wustl.edu	37	4	15569074	15569074	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	4	15569074	15569074	C	A	SNP	CC2D2A	ENST00000413206	human	ensembl	74_37	+1	known	missense	c.3257	p.P1086Q	0.932	superfamily_C2_dom,smart_C2_dom	superfamily_C2_dom,smart_C2_dom	-	no_errors	CC2D2A	HGNC	ENSG00000048342				75	0	0	31	11	26.1905
NPY5R	0	genome.wustl.edu	37	4	164272323	164272323	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	4	164272323	164272323	C	A	SNP	NPY5R	ENST00000338566	human	ensembl	74_37	+1	known	missense	c.898	p.P300T	0.698	pfam_GPCR_Rhodpsn,prints_NPY5_rcpt,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_NPY5_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	NPY5R	HGNC	ENSG00000164129				81	0	0	48	17	26.1538
NPY5R	0	genome.wustl.edu	37	4	164272327	164272327	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	4	164272327	164272327	A	G	SNP	NPY5R	ENST00000338566	human	ensembl	74_37	+1	known	missense	c.902	p.E301G	0.008	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_NPY5_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	NPY5R	HGNC	ENSG00000164129				80	0	0	47	17	26.5625
SORBS2	0	genome.wustl.edu	37	4	186559238	186559238	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	4	186559238	186559238	G	A	SNP	SORBS2	ENST00000393528	human	ensembl	74_37	-1	putative	missense	c.901	p.R301C	1.000	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_Sorb,superfamily_SH3_domain,smart_Sorb,smart_SH3_domain,pfscan_Sorb,pfscan_SH3_domain,prints_p67phox,prints_SH3_domain	-	no_errors	SORBS2	HGNC	ENSG00000154556				102	1	0.970874	67	6	8.21918
HTT	0	genome.wustl.edu	37	4	3230455	3230455	+	Silent	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	4	3230455	3230455	G	A	SNP	HTT	ENST00000355072	human	ensembl	74_37	+1	known	silent	c.7962	p.T2654	0.062	NULL	pfam_Huntingtin_middle-repeat,pfam_HEAT,superfamily_ARM-type_fold,prints_Huntingtin	-	no_errors	HTT	HGNC	ENSG00000197386				52	0	0	45	10	18.1818
ENSG00000248840	0	genome.wustl.edu	37	4	3314551	3314551	+	RNA	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	4	3314551	3314551	G	A	SNP	ENSG00000248840	ENST00000600073	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.006	-	-	-	no_errors	RP11-357G3.2	Clone_based_vega_gene	ENSG00000248840				18	0	0	12	4	25
EVC	0	genome.wustl.edu	37	4	5733298	5733298	+	Silent	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	4	5733298	5733298	C	T	SNP	EVC	ENST00000264956	human	ensembl	74_37	+1	known	silent	c.531	p.S177	0.648	NULL	NULL	-	no_errors	EVC	HGNC	ENSG00000072840				67	0	0	47	22	31.8841
EPHA5	0	genome.wustl.edu	37	4	66189927	66189927	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	4	66189927	66189927	G	A	SNP	EPHA5	ENST00000273854	human	ensembl	74_37	-1	known	missense	c.3019	p.R1007W	1.000	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pirsf_Tyr_kinase_ephrin_rcpt,pfscan_SAM	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,pirsf_Tyr_kinase_ephrin_rcpt,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	EPHA5	HGNC	ENSG00000145242				64	0	0	53	24	31.1688
NPFFR2	0	genome.wustl.edu	37	4	73012934	73012934	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	4	73012934	73012934	T	G	SNP	NPFFR2	ENST00000308744	human	ensembl	74_37	+1	known	missense	c.974	p.L325R	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_NPFF_rcpt_2,prints_NPFF_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	NPFFR2	HGNC	ENSG00000056291				57	0	0	29	16	35.5556
EREG	0	genome.wustl.edu	37	4	75245185	75245185	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	4	75245185	75245185	G	A	SNP	EREG	ENST00000244869	human	ensembl	74_37	+1	known	missense	c.88	p.V30I	0.006	NULL	pfscan_EG-like_dom	-	no_errors	EREG	HGNC	ENSG00000124882				158	0	0	84	32	27.5862
USO1	0	genome.wustl.edu	37	4	76731599	76731599	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	4	76731599	76731599	G	T	SNP	USO1	ENST00000538159	human	ensembl	74_37	+1	known	missense	c.2517	p.E839D	0.960	pfam_Uso1_p115_C,superfamily_ARM-type_fold	pfam_Vesicle_Uso1_P115_head,pfam_Uso1_p115_C,superfamily_ARM-type_fold,superfamily_t-SNARE	-	no_errors	USO1	HGNC	ENSG00000138768				15	0	0	10	4	28.5714
FRAS1	0	genome.wustl.edu	37	4	79328882	79328882	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	4	79328882	79328882	G	A	SNP	FRAS1	ENST00000264895	human	ensembl	74_37	+1	known	missense	c.4195	p.D1399N	1.000	NULL	pfam_Calx_beta,pfam_VWF_C,superfamily_Growth_fac_rcpt_N_dom,superfamily_Cadherin-like,smart_VWC_out,smart_VWF_C,smart_Furin_repeat,smart_EG-like_dom,smart_Calx_beta,pfscan_VWF_C	-	no_errors	FRAS1	HGNC	ENSG00000138759				67	0	0	51	26	33.7662
HNRNPDL	0	genome.wustl.edu	37	4	83347709	83347709	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	4	83347709	83347709	C	A	SNP	HNRNPDL	ENST00000295470	human	ensembl	74_37	-1	known	missense	c.1099	p.G367C	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HNRNPDL	HGNC	ENSG00000152795				106	0	0	85	13	13.2653
CPZ	0	genome.wustl.edu	37	4	8603164	8603164	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	4	8603164	8603164	T	C	SNP	CPZ	ENST00000360986	human	ensembl	74_37	+1	known	missense	c.436	p.C146R	1.000	pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom	pfam_Peptidase_M14,pfam_Frizzled_dom,superfamily_Frizzled_dom,superfamily_CarboxyPept-like_regulatory,smart_Frizzled_dom,smart_Peptidase_M14,prints_Peptidase_M14,pfscan_Frizzled_dom	-	no_errors	CPZ	HGNC	ENSG00000109625				9	0	0	6	7	53.8462
ARHGAP24	0	genome.wustl.edu	37	4	86915861	86915861	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	4	86915861	86915861	A	G	SNP	ARHGAP24	ENST00000395184	human	ensembl	74_37	+1	known	missense	c.1054	p.K352E	1.000	NULL	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom	-	no_errors	ARHGAP24	HGNC	ENSG00000138639				107	0	0	89	21	19.0909
DRD5	0	genome.wustl.edu	37	4	9783746	9783746	+	Silent	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	4	9783746	9783746	G	A	SNP	DRD5	ENST00000304374	human	ensembl	74_37	+1	known	silent	c.93	p.A31	0.007	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Dopamine_D5_rcpt,prints_Dopamine_rcpt	-	no_errors	DRD5	HGNC	ENSG00000169676				12	0	0	10	5	33.3333
ST8SIA4	0	genome.wustl.edu	37	5	100147820	100147820	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	5	100147820	100147820	T	C	SNP	ST8SIA4	ENST00000231461	human	ensembl	74_37	-1	known	missense	c.811	p.N271D	1.000	pfam_Glyco_trans_29,pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST8SIA4	HGNC	ENSG00000113532				50	0	0	34	13	27.6596
CAMK4	0	genome.wustl.edu	37	5	110809009	110809009	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	5	110809009	110809009	C	T	SNP	CAMK4	ENST00000282356	human	ensembl	74_37	+1	known	missense	c.626	p.A209V	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CAMK4	HGNC	ENSG00000152495				131	0	0	66	12	15.3846
APC	0	genome.wustl.edu	37	5	112162834	112162834	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	5	112162834	112162834	C	T	SNP	APC	ENST00000257430	human	ensembl	74_37	+1	known	nonsense	c.1438	p.Q480*	1.000	superfamily_ARM-type_fold,smart_Armadillo	pfam_APC_basic_dom,pfam_EB1-bd,pfam_APC_Cys-rich_rpt,pfam_Armadillo,pfam_APC_dom,pfam_SAMP,pfam_APC_15aa_rpt,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	APC	HGNC	ENSG00000134982				55	0	0	35	19	35.1852
PGGT1B	0	genome.wustl.edu	37	5	114588851	114588851	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	5	114588851	114588851	A	G	SNP	PGGT1B	ENST00000419445	human	ensembl	74_37	-1	known	missense	c.242	p.V81A	1.000	superfamily_Terpenoid_cyclase/PrenylTrfase	pfam_Prenyltrans,superfamily_Terpenoid_cyclase/PrenylTrfase	-	no_errors	PGGT1B	HGNC	ENSG00000164219				69	0	0	68	5	6.84932
ADAMTS19	0	genome.wustl.edu	37	5	128984551	128984551	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	5	128984551	128984551	T	A	SNP	ADAMTS19	ENST00000274487	human	ensembl	74_37	+1	known	missense	c.2046	p.N682K	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_PLAC,pfam_Pept_M10_metallopeptidase,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS19	HGNC	ENSG00000145808				114	0	0	81	31	27.6786
CHSY3	0	genome.wustl.edu	37	5	129243994	129243994	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	5	129243994	129243994	G	A	SNP	CHSY3	ENST00000305031	human	ensembl	74_37	+1	known	missense	c.1027	p.V343M	1.000	pfam_Chond_GalNAc,pfam_Fringe-like	pfam_Chond_GalNAc,pfam_Fringe-like	-	no_errors	CHSY3	HGNC	ENSG00000198108				62	0	0	54	13	19.403
TIFAB	0	genome.wustl.edu	37	5	134785283	134785283	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	5	134785283	134785283	A	G	SNP	TIFAB	ENST00000537858	human	ensembl	74_37	-1	known	missense	c.347	p.V116A	0.000	superfamily_SMAD_FHA_domain	pfam_FHA_dom,superfamily_SMAD_FHA_domain	-	no_errors	TIFAB	HGNC	ENSG00000255833				111	0	0	62	32	34.0426
DNAH5	0	genome.wustl.edu	37	5	13829793	13829793	+	Silent	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	5	13829793	13829793	C	T	SNP	DNAH5	ENST00000265104	human	ensembl	74_37	-1	known	silent	c.6270	p.R2090	0.883	superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139				59	0	0	34	11	24.4444
DNAH5	0	genome.wustl.edu	37	5	13830149	13830149	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	5	13830149	13830149	G	T	SNP	DNAH5	ENST00000265104	human	ensembl	74_37	-1	known	missense	c.6235	p.L2079I	1.000	superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139				45	0	0	27	2	6.89655
PCDHA10	0	genome.wustl.edu	37	5	140237829	140237829	+	Silent	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	5	140237829	140237829	G	A	SNP	PCDHA10	ENST00000307360	human	ensembl	74_37	+1	known	silent	c.2196	p.P732	0.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA10	HGNC	ENSG00000250120				34	0	0	17	10	37.037
PCDHB4	0	genome.wustl.edu	37	5	140503167	140503167	+	Silent	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	5	140503167	140503167	C	T	SNP	PCDHB4	ENST00000194152	human	ensembl	74_37	+1	known	silent	c.1587	p.R529	0.003	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB4	HGNC	ENSG00000081818				87	0	0	65	25	27.7778
PCDHB8	0	genome.wustl.edu	37	5	140559327	140559327	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	5	140559327	140559327	C	T	SNP	PCDHB8	ENST00000239444	human	ensembl	74_37	+1	known	missense	c.1712	p.A571V	0.086	superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB8	HGNC	ENSG00000120322				118	0	0	107	16	13.0081
PCDHB16	0	genome.wustl.edu	37	5	140563551	140563551	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	5	140563551	140563551	G	A	SNP	PCDHB16	ENST00000361016	human	ensembl	74_37	+1	known	missense	c.1417	p.V473I	0.190	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB16	HGNC	ENSG00000196963				175	0	0	193	11	5.39216
PCDHGB7	0	genome.wustl.edu	37	5	140799030	140799030	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	5	140799030	140799030	G	A	SNP	PCDHGB7	ENST00000398594	human	ensembl	74_37	+1	known	missense	c.1604	p.R535H	0.361	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB7	HGNC	ENSG00000254122				48	0	0	30	14	31.8182
PCDH1	0	genome.wustl.edu	37	5	141243291	141243291	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	5	141243291	141243291	C	T	SNP	PCDH1	ENST00000287008	human	ensembl	74_37	-1	known	missense	c.2605	p.A869T	0.749	pfam_Protocadherin	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH1	HGNC	ENSG00000156453				304	0	0	211	100	32.1543
TRIO	0	genome.wustl.edu	37	5	14401083	14401083	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	5	14401083	14401083	G	T	SNP	TRIO	ENST00000344204	human	ensembl	74_37	+1	known	missense	c.4626	p.L1542F	1.000	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,pfam_Prot_kinase_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,superfamily_Capsid/spike_ssDNA_virus,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	TRIO	HGNC	ENSG00000038382				63	0	0	47	3	6
TRIO	0	genome.wustl.edu	37	5	14485239	14485239	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	5	14485239	14485239	C	T	SNP	TRIO	ENST00000344204	human	ensembl	74_37	+1	known	missense	c.6719	p.S2240L	1.000	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,pfam_Prot_kinase_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,superfamily_Capsid/spike_ssDNA_virus,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	TRIO	HGNC	ENSG00000038382				108	0	0	70	30	30
TRIO	0	genome.wustl.edu	37	5	14504593	14504593	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	5	14504593	14504593	G	A	SNP	TRIO	ENST00000344204	human	ensembl	74_37	+1	known	missense	c.8503	p.D2835N	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_DH-domain,pfam_Prot_kinase_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,superfamily_Capsid/spike_ssDNA_virus,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	TRIO	HGNC	ENSG00000038382				227	0	0	198	67	25.283
TCERG1	0	genome.wustl.edu	37	5	145878172	145878172	+	Silent	SNP	C	C	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	5	145878172	145878172	C	A	SNP	TCERG1	ENST00000296702	human	ensembl	74_37	+1	known	silent	c.2305	p.R769	1.000	pfam_FF_domain,superfamily_FF_domain,smart_FF_domain	pfam_FF_domain,pfam_WW_dom,superfamily_FF_domain,superfamily_WW_dom,smart_WW_dom,smart_FF_domain,pfscan_WW_dom	-	no_errors	TCERG1	HGNC	ENSG00000113649				38	0	0	30	3	9.09091
GPR151	0	genome.wustl.edu	37	5	145895064	145895064	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	5	145895064	145895064	G	A	SNP	GPR151	ENST00000311104	human	ensembl	74_37	-1	known	missense	c.613	p.L205F	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR151	HGNC	ENSG00000173250				37	0	0	20	10	33.3333
PPP2R2B	0	genome.wustl.edu	37	5	145969461	145969461	+	RNA	SNP	G	G	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	5	145969461	145969461	G	T	SNP	PPP2R2B	ENST00000530902	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	PPP2R2B	HGNC	ENSG00000156475				81	0	0	36	20	35.7143
PDE6A	0	genome.wustl.edu	37	5	149274815	149274815	+	Silent	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	5	149274815	149274815	G	A	SNP	PDE6A	ENST00000255266	human	ensembl	74_37	-1	known	silent	c.1659	p.Y553	1.000	NULL	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE6A	HGNC	ENSG00000132915				121	1	0.819672	75	42	35.8974
LPCAT1	0	genome.wustl.edu	37	5	1501615	1501615	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	5	1501615	1501615	G	A	SNP	LPCAT1	ENST00000283415	human	ensembl	74_37	-1	known	missense	c.239	p.A80V	0.232	NULL	pfam_Plipid/glycerol_acylTrfase,smart_Plipid/glycerol_acylTrfase,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	LPCAT1	HGNC	ENSG00000153395				31	0	0	24	14	36.8421
FAT2	0	genome.wustl.edu	37	5	150892047	150892047	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	5	150892047	150892047	C	T	SNP	FAT2	ENST00000261800	human	ensembl	74_37	-1	known	missense	c.11584	p.A3862T	0.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Cadherin,pfam_Laminin_G,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT2	HGNC	ENSG00000086570				80	0	0	54	29	34.9398
FAT2	0	genome.wustl.edu	37	5	150948063	150948063	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	5	150948063	150948063	G	T	SNP	FAT2	ENST00000261800	human	ensembl	74_37	-1	known	missense	c.430	p.L144M	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT2	HGNC	ENSG00000086570				108	0	0	86	37	30.0813
MAT2B	0	genome.wustl.edu	37	5	162945228	162945228	+	Silent	SNP	A	A	G			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	5	162945228	162945228	A	G	SNP	MAT2B	ENST00000321757	human	ensembl	74_37	+1	known	silent	c.864	p.Q288	0.011	pfam_dTDP_dehydrorham_reduct	pfam_dTDP_dehydrorham_reduct,pfam_Epimerase_deHydtase,pfam_Polysac_CapD-like,pfam_3Beta_OHSteriod_DH/Estase	-	no_errors	MAT2B	HGNC	ENSG00000038274				25	0	0	23	10	30.303
TENM2	0	genome.wustl.edu	37	5	167673928	167673928	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	5	167673928	167673928	C	T	SNP	TENM2	ENST00000518659	human	ensembl	74_37	+1	known	missense	c.5984	p.S1995L	0.997	superfamily_ConA-like_lec_gl_sf	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,superfamily_Quino_amine_DH_bsu,superfamily_ConA-like_lec_gl_sf,superfamily_Cytokine_IL1-like,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	TENM2	HGNC	ENSG00000145934				64	0	0	59	16	21.3333
RARS	0	genome.wustl.edu	37	5	167937620	167937620	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	5	167937620	167937620	C	T	SNP	RARS	ENST00000231572	human	ensembl	74_37	+1	known	missense	c.1381	p.R461C	1.000	pfam_Arg-tRNA-synth_Ia_core,tigrfam_Arg-tRNA-ligase_Ia	pfam_Arg-tRNA-synth_Ia_core,pfam_DALR_anticod-bd,pfam_Arg-tRNA-synth_N,superfamily_tRNAsynth_1a_anticodon-bd,superfamily_Arg-tRNA-synth_N,smart_DALR_anticod-bd,prints_Arg-tRNA-synth_Ia_core,tigrfam_Arg-tRNA-ligase_Ia	-	no_errors	RARS	HGNC	ENSG00000113643				45	0	0	33	3	8.33333
DOCK2	0	genome.wustl.edu	37	5	169267846	169267846	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	5	169267846	169267846	A	G	SNP	DOCK2	ENST00000256935	human	ensembl	74_37	+1	known	missense	c.2789	p.H930R	0.936	superfamily_ARM-type_fold	pfam_DOCK_C,pfam_SH3_2,superfamily_SH3_domain,superfamily_Cyt_c-like_dom,superfamily_ARM-type_fold,superfamily_Ferritin-like_SF,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK2	HGNC	ENSG00000134516				46	0	0	33	9	21.4286
GRK6	0	genome.wustl.edu	37	5	176861093	176861093	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	5	176861093	176861093	G	A	SNP	GRK6	ENST00000528793	human	ensembl	74_37	+1	known	missense	c.917	p.R306H	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_RGS_dom,superfamily_Kinase-like_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Regulat_G_prot_signal_superfam,pfscan_Prot_kinase_dom,prints_GPCR_kinase	-	no_errors	GRK6	HGNC	ENSG00000198055				27	0	0	13	6	31.5789
FLT4	0	genome.wustl.edu	37	5	180048836	180048836	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	5	180048836	180048836	G	T	SNP	FLT4	ENST00000261937	human	ensembl	74_37	-1	known	missense	c.1726	p.L576M	1.000	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_VEGFR3_rcpt	-	no_errors	FLT4	HGNC	ENSG00000037280				122	0	0	105	32	23.3577
FLT4	0	genome.wustl.edu	37	5	180056346	180056346	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	5	180056346	180056346	C	T	SNP	FLT4	ENST00000261937	human	ensembl	74_37	-1	known	missense	c.898	p.V300I	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_VEGFR3_rcpt	-	no_errors	FLT4	HGNC	ENSG00000037280				61	0	0	47	20	29.8507
TRIM7	0	genome.wustl.edu	37	5	180630566	180630566	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	5	180630566	180630566	C	A	SNP	TRIM7	ENST00000274773	human	ensembl	74_37	-1	known	missense	c.597	p.K199N	1.000	NULL	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin,prints_Znf_B-box_chordata	-	no_errors	TRIM7	HGNC	ENSG00000146054				64	0	0	36	23	38.9831
IRX2	0	genome.wustl.edu	37	5	2748541	2748541	+	Silent	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	5	2748541	2748541	C	T	SNP	IRX2	ENST00000302057	human	ensembl	74_37	-1	known	silent	c.1281	p.A427	0.971	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,smart_Iroquois_homeo,pfscan_Homeobox_dom	-	no_errors	IRX2	HGNC	ENSG00000170561				11	0	0	2	4	66.6667
RXFP3	0	genome.wustl.edu	37	5	33937043	33937043	+	Silent	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	5	33937043	33937043	G	A	SNP	RXFP3	ENST00000330120	human	ensembl	74_37	+1	known	silent	c.198	p.P66	0.000	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Formyl_pep_rcpt	-	no_errors	RXFP3	HGNC	ENSG00000182631				79	0	0	46	23	33.3333
IRX1	0	genome.wustl.edu	37	5	3600194	3600194	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	5	3600194	3600194	G	A	SNP	IRX1	ENST00000302006	human	ensembl	74_37	+1	known	missense	c.1132	p.A378T	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,smart_Iroquois_homeo,pfscan_Homeobox_dom	-	no_errors	IRX1	HGNC	ENSG00000170549				23	0	0	16	16	50
DAB2	0	genome.wustl.edu	37	5	39377057	39377057	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	5	39377057	39377057	A	G	SNP	DAB2	ENST00000320816	human	ensembl	74_37	-1	known	missense	c.1832	p.M611T	0.006	NULL	pfam_PTB/PI_dom,smart_PTB/PI_dom,pfscan_PTB/PI_dom	-	no_errors	DAB2	HGNC	ENSG00000153071				153	0	0	129	54	29.5082
AHRR	0	genome.wustl.edu	37	5	433983	433983	+	Silent	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	5	433983	433983	G	A	SNP	AHRR	ENST00000316418	human	ensembl	74_37	+1	known	silent	c.1194	p.E398	0.000	NULL	pfam_PAS_fold,pfam_bHLH_dom,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,pfscan_PAS,pfscan_bHLH_dom	-	no_errors	AHRR	HGNC	ENSG00000063438				25	0	0	9	7	43.75
ANKRA2	0	genome.wustl.edu	37	5	72857049	72857049	+	Silent	SNP	A	A	G			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	5	72857049	72857049	A	G	SNP	ANKRA2	ENST00000296785	human	ensembl	74_37	-1	known	silent	c.354	p.S118	0.997	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRA2	HGNC	ENSG00000164331				86	0	0	38	26	40.625
HOMER1	0	genome.wustl.edu	37	5	78693429	78693429	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	5	78693429	78693429	G	T	SNP	HOMER1	ENST00000334082	human	ensembl	74_37	-1	known	missense	c.716	p.A239E	1.000	NULL	pfam_WH1/EVH1,smart_WH1/EVH1,pfscan_WH1/EVH1	-	no_errors	HOMER1	HGNC	ENSG00000152413				144	0	0	69	22	24.1758
VCAN	0	genome.wustl.edu	37	5	82835533	82835533	+	Silent	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	5	82835533	82835533	G	A	SNP	VCAN	ENST00000265077	human	ensembl	74_37	+1	known	silent	c.6711	p.P2237	0.000	NULL	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_EG-like_dom,pfam_Sushi_SCR_CCP,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_Ig_sub,smart_Link,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like_dom,prints_Link	-	no_errors	VCAN	HGNC	ENSG00000038427				57	0	0	38	18	32.1429
CCNH	0	genome.wustl.edu	37	5	86695286	86695286	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	5	86695286	86695286	C	T	SNP	CCNH	ENST00000256897	human	ensembl	74_37	-1	known	missense	c.797	p.R266K	0.931	superfamily_Cyclin-like,pirsf_CyclinC,tigrfam_CyclinH/Ccl1	pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_CyclinC,tigrfam_CyclinH/Ccl1	-	no_errors	CCNH	HGNC	ENSG00000134480				208	0	0	121	47	27.9762
HDDC2	0	genome.wustl.edu	37	6	125619888	125619888	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	6	125619888	125619888	G	T	SNP	HDDC2	ENST00000398153	human	ensembl	74_37	-1	known	missense	c.281	p.P94H	1.000	pfam_HD_domain,smart_HD/PDEase_dom	pfam_HD_domain,smart_HD/PDEase_dom	-	no_errors	HDDC2	HGNC	ENSG00000111906				86	0	0	54	24	30.7692
TMEM200A	0	genome.wustl.edu	37	6	130762378	130762378	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	6	130762378	130762378	G	A	SNP	TMEM200A	ENST00000296978	human	ensembl	74_37	+1	known	missense	c.811	p.G271S	0.000	NULL	pfam_DUF2371_TMEM200	-	no_errors	TMEM200A	HGNC	ENSG00000164484				130	0	0	83	31	27.193
MOXD1	0	genome.wustl.edu	37	6	132643931	132643931	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	6	132643931	132643931	T	C	SNP	MOXD1	ENST00000367963	human	ensembl	74_37	-1	known	missense	c.1192	p.R398G	1.000	superfamily_PHM/PNGase_F_dom	pfam_Cu2_ascorb_mOase_N,pfam_DOMON_domain,superfamily_PHM/PNGase_F_dom,smart_DOMON_domain,pfscan_DOMON_domain,prints_Dopamine_b_mOase	-	no_errors	MOXD1	HGNC	ENSG00000079931				49	0	0	44	17	27.8689
HIVEP2	0	genome.wustl.edu	37	6	143093193	143093193	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	6	143093193	143093193	C	T	SNP	HIVEP2	ENST00000012134	human	ensembl	74_37	-1	known	missense	c.2683	p.E895K	1.000	NULL	pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP2	HGNC	ENSG00000010818				54	0	0	32	11	25.5814
UTRN	0	genome.wustl.edu	37	6	144780470	144780470	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	6	144780470	144780470	G	A	SNP	UTRN	ENST00000367545	human	ensembl	74_37	+1	known	missense	c.2687	p.R896H	0.001	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_dom,superfamily_CH-domain,superfamily_WW_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_dom,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_dom,pfscan_Znf_ZZ	-	no_errors	UTRN	HGNC	ENSG00000152818				61	0	0	52	18	25.7143
SYNE1	0	genome.wustl.edu	37	6	152476161	152476161	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	6	152476161	152476161	G	A	SNP	SYNE1	ENST00000265368	human	ensembl	74_37	-1	known	nonsense	c.23995	p.R7999*	0.997	superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018				139	1	0.714286	92	25	21.3675
LPAL2	0	genome.wustl.edu	37	6	160908436	160908436	+	RNA	SNP	G	G	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	6	160908436	160908436	G	T	SNP	LPAL2	ENST00000335388	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.926	-	-	-	no_errors	LPAL2	HGNC	ENSG00000213071				89	0	0	61	4	6.15385
FRMD1	0	genome.wustl.edu	37	6	168461723	168461723	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	6	168461723	168461723	G	A	SNP	FRMD1	ENST00000283309	human	ensembl	74_37	-1	known	missense	c.1060	p.R354W	1.000	pfscan_FERM_domain	pfam_FERM_central,pfam_FERM_N,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	-	no_errors	FRMD1	HGNC	ENSG00000153303				34	0	0	9	7	43.75
MRS2	0	genome.wustl.edu	37	6	24418358	24418358	+	Silent	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	6	24418358	24418358	C	T	SNP	MRS2	ENST00000443868	human	ensembl	74_37	+1	known	silent	c.892	p.L298	1.000	NULL	NULL	-	no_errors	MRS2	HGNC	ENSG00000124532				158	0	0	93	34	26.7717
ZNF322	0	genome.wustl.edu	37	6	26638628	26638628	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	6	26638628	26638628	A	C	SNP	ZNF322	ENST00000415922	human	ensembl	74_37	-1	known	missense	c.154	p.F52V	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF322	HGNC	ENSG00000181315				443	0	0	230	74	24.3421
OR2J2	0	genome.wustl.edu	37	6	29141713	29141713	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	6	29141713	29141713	C	A	SNP	OR2J2	ENST00000377167	human	ensembl	74_37	+1	known	missense	c.301	p.Q101K	0.789	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2J2	HGNC	ENSG00000204700				196	0	0	106	50	32.0513
HLA-J	0	genome.wustl.edu	37	6	29976077	29976077	+	RNA	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	6	29976077	29976077	G	A	SNP	HLA-J	ENST00000462773	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.997	-	-	-	no_errors	HLA-J	HGNC	ENSG00000204622				71	0	0	55	5	8.33333
PPP1R18	0	genome.wustl.edu	37	6	30647115	30647115	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	6	30647115	30647115	A	G	SNP	PPP1R18	ENST00000274853	human	ensembl	74_37	-1	known	missense	c.1663	p.S555P	0.994	NULL	NULL	-	no_errors	PPP1R18	HGNC	ENSG00000146112				54	0	0	57	3	5
MDC1	0	genome.wustl.edu	37	6	30672422	30672422	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	6	30672422	30672422	C	T	SNP	MDC1	ENST00000376406	human	ensembl	74_37	-1	known	missense	c.4538	p.R1513Q	0.000	NULL	pfam_FHA_dom,superfamily_BRCT_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_BRCT_dom,pfscan_FHA_dom	-	no_errors	MDC1	HGNC	ENSG00000137337				171	0	0	125	52	29.3785
VWA7	0	genome.wustl.edu	37	6	31734483	31734483	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	6	31734483	31734483	C	T	SNP	VWA7	ENST00000447450	human	ensembl	74_37	-1	known	missense	c.1921	p.G641R	0.000	NULL	NULL	-	no_errors	VWA7	HGNC	ENSG00000204396				103	0	0	93	5	5.10204
EHMT2	0	genome.wustl.edu	37	6	31857080	31857080	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	6	31857080	31857080	G	A	SNP	EHMT2	ENST00000395728	human	ensembl	74_37	-1	known	nonsense	c.1210	p.R404*	1.000	NULL	pfam_Ankyrin_rpt,pfam_SET_dom,pfam_Pre-SET_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SET_dom,pfscan_Pre-SET_dom,prints_Ankyrin_rpt	-	no_errors	EHMT2	HGNC	ENSG00000204371				28	0	0	21	7	25
SKIV2L	0	genome.wustl.edu	37	6	31931727	31931727	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	6	31931727	31931727	G	A	SNP	SKIV2L	ENST00000375394	human	ensembl	74_37	+1	known	missense	c.1685	p.R562H	0.829	superfamily_P-loop_NTPase,pirsf_RNA_helicase_ATP-dep_SK12/DOB1	pfam_DSH_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pirsf_RNA_helicase_ATP-dep_SK12/DOB1,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SKIV2L	HGNC	ENSG00000204351				311	0	0	206	79	27.7193
C4B	0	genome.wustl.edu	37	6	31997400	31997400	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	6	31997400	31997400	C	T	SNP	C4B	ENST00000435363	human	ensembl	74_37	+1	known	missense	c.3734	p.P1245L	0.000	pfam_A2M_comp,superfamily_Terpenoid_cyclase/PrenylTrfase	pfam_A2M_comp,pfam_A-macroglobulin_rcpt-bd,pfam_Macroglobln_a2,pfam_A2M_N_2,pfam_Netrin_module_non-TIMP,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_Anaphylatoxin/fibulin,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd,superfamily_TIMP-like_OB-fold,superfamily_Anaphylatoxin_comp_syst,superfamily_Invasin/intimin_cell_adhesion,smart_Anaphylatoxin/fibulin,smart_Netrin_module_non-TIMP,pfscan_Anaphylatoxin/fibulin,pfscan_Netrin_domain,prints_Anaphylatoxn_comp_syst_dom	-	no_errors	C4B	HGNC	ENSG00000224389				50	0	0	24	7	22.5806
TNXB	0	genome.wustl.edu	37	6	32036744	32036744	+	Silent	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	6	32036744	32036744	G	A	SNP	TNXB	ENST00000375247	human	ensembl	74_37	-1	known	silent	c.5757	p.D1919	0.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNXB	HGNC	ENSG00000168477				157	0	0	106	51	32.4841
HLA-DMB	0	genome.wustl.edu	37	6	32903313	32903313	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	6	32903313	32903313	T	C	SNP	HLA-DMB	ENST00000418107	human	ensembl	74_37	-1	known	missense	c.739	p.S247G	0.519	NULL	pfam_Ig_C1-set,pfam_MHC_II_b_N,pfam_CD80_C2-set,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_b_N,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	HLA-DMB	HGNC	ENSG00000242574				189	0	0	108	49	31.2102
TAPBP	0	genome.wustl.edu	37	6	33281220	33281220	+	Silent	SNP	C	C	G			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	6	33281220	33281220	C	G	SNP	TAPBP	ENST00000426633	human	ensembl	74_37	-1	known	silent	c.243	p.R81	0.394	NULL	pfam_Ig_C1-set,pfscan_Ig-like_dom,prints_Tapasin	-	no_errors	TAPBP	HGNC	ENSG00000231925				13	0	0	12	5	29.4118
GRM4	0	genome.wustl.edu	37	6	34101144	34101144	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	6	34101144	34101144	G	A	SNP	GRM4	ENST00000374181	human	ensembl	74_37	-1	known	missense	c.130	p.R44C	1.000	superfamily_Peripla_BP_I,prints_GPCR_3_mtglu_rcpt_4	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_4,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_GABA_rcpt_B	-	no_errors	GRM4	HGNC	ENSG00000124493				43	0	0	33	3	8.33333
MTCH1	0	genome.wustl.edu	37	6	36946316	36946316	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	6	36946316	36946316	C	T	SNP	MTCH1	ENST00000373627	human	ensembl	74_37	-1	known	missense	c.478	p.A160T	1.000	superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	MTCH1	HGNC	ENSG00000137409				150	0	0	101	34	25.1852
MOCS1	0	genome.wustl.edu	37	6	39881119	39881119	+	Silent	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	6	39881119	39881119	C	T	SNP	MOCS1	ENST00000340692	human	ensembl	74_37	-1	known	silent	c.699	p.A233	1.000	pfam_rSAM,smart_Elp3/MiaB/NifB,tigrfam_MoaA	pfam_Mopterin_CF_biosynth-C_dom,pfam_Mob_synth_C,pfam_rSAM,superfamily_Mopterin_CF_biosynth-C_dom,smart_Elp3/MiaB/NifB,tigrfam_MoaA,tigrfam_Mo_CF_biosynth-C	-	no_errors	MOCS1	HGNC	ENSG00000124615				75	0	0	55	23	29.4872
PRPF4B	0	genome.wustl.edu	37	6	4056600	4056600	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	6	4056600	4056600	G	A	SNP	PRPF4B	ENST00000337659	human	ensembl	74_37	+1	known	missense	c.2512	p.A838T	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	PRPF4B	HGNC	ENSG00000112739				144	0	0	77	33	30
TREM1	0	genome.wustl.edu	37	6	41243898	41243898	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	6	41243898	41243898	G	T	SNP	TREM1	ENST00000244709	human	ensembl	74_37	-1	known	missense	c.670	p.L224M	0.043	NULL	pfam_Ig_V-set,smart_Ig_sub	-	no_errors	TREM1	HGNC	ENSG00000124731				78	0	0	63	19	23.1707
NCR2	0	genome.wustl.edu	37	6	41309825	41309825	+	Silent	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	6	41309825	41309825	G	A	SNP	NCR2	ENST00000373089	human	ensembl	74_37	+1	known	silent	c.582	p.V194	0.002	NULL	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	NCR2	HGNC	ENSG00000096264				143	0	0	105	48	31.3725
CYP39A1	0	genome.wustl.edu	37	6	46607365	46607365	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	6	46607365	46607365	T	A	SNP	CYP39A1	ENST00000275016	human	ensembl	74_37	-1	known	missense	c.354	p.K118N	0.073	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I	-	no_errors	CYP39A1	HGNC	ENSG00000146233				30	0	0	24	10	29.4118
FARS2	0	genome.wustl.edu	37	6	5369396	5369396	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	6	5369396	5369396	G	A	SNP	FARS2	ENST00000274680	human	ensembl	74_37	+1	known	missense	c.593	p.R198Q	1.000	pfam_Phenylalanyl-tRNA_Synthase,pfscan_aa-tRNA-synth_II	pfam_Phenylalanyl-tRNA_Synthase,pfam_PheS_beta_Fdx_antiC-bd,superfamily_PheS_beta_Fdx_antiC-bd,smart_PheS_beta_Fdx_antiC-bd,pfscan_aa-tRNA-synth_II,tigrfam_Phe-tRNA-synth_IIc_mito	-	no_errors	FARS2	HGNC	ENSG00000145982				46	0	0	26	11	29.7297
FILIP1	0	genome.wustl.edu	37	6	76024734	76024734	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	6	76024734	76024734	T	C	SNP	FILIP1	ENST00000237172	human	ensembl	74_37	-1	known	missense	c.814	p.T272A	0.248	NULL	pfam_Cortactin-binding_p2_N,prints_Tropomyosin	-	no_errors	FILIP1	HGNC	ENSG00000118407				121	0	0	68	41	37.6147
MYO6	0	genome.wustl.edu	37	6	76582940	76582940	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	6	76582940	76582940	G	T	SNP	MYO6	ENST00000369981	human	ensembl	74_37	+1	known	missense	c.2000	p.R667L	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO6	HGNC	ENSG00000196586				49	0	0	23	13	36.1111
LCA5	0	genome.wustl.edu	37	6	80223368	80223368	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	6	80223368	80223368	C	T	SNP	LCA5	ENST00000369846	human	ensembl	74_37	-1	known	missense	c.281	p.R94Q	1.000	NULL	NULL	-	no_errors	LCA5	HGNC	ENSG00000135338				226	0	0	141	53	27.3196
BCKDHB	0	genome.wustl.edu	37	6	80881109	80881109	+	Splice_Site	SNP	T	T	C			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	6	80881109	80881109	T	C	SNP	BCKDHB	ENST00000320393	human	ensembl	74_37	+1	known	splice_site	c.742+2	e6+2	1.000	-	-	-	no_errors	BCKDHB	HGNC	ENSG00000083123				38	0	0	10	5	33.3333
SNX14	0	genome.wustl.edu	37	6	86256893	86256893	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	6	86256893	86256893	G	A	SNP	SNX14	ENST00000314673	human	ensembl	74_37	-1	known	missense	c.1045	p.R349C	1.000	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam	pfam_Phox_assoc,pfam_Sorting_nexin_C,pfam_Phox,pfam_RGS_dom,superfamily_Phox,superfamily_Regulat_G_prot_signal_superfam,smart_PX_assoc_Snx13,smart_Regulat_G_prot_signal_superfam,smart_Phox,pfscan_Phox,pfscan_Phox_assoc,pfscan_Regulat_G_prot_signal_superfam	-	no_errors	SNX14	HGNC	ENSG00000135317				36	0	0	30	7	18.9189
SNX14	0	genome.wustl.edu	37	6	86283982	86283982	+	Silent	SNP	T	T	C			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	6	86283982	86283982	T	C	SNP	SNX14	ENST00000314673	human	ensembl	74_37	-1	known	silent	c.255	p.K85	1.000	NULL	pfam_Phox_assoc,pfam_Sorting_nexin_C,pfam_Phox,pfam_RGS_dom,superfamily_Phox,superfamily_Regulat_G_prot_signal_superfam,smart_PX_assoc_Snx13,smart_Regulat_G_prot_signal_superfam,smart_Phox,pfscan_Phox,pfscan_Phox_assoc,pfscan_Regulat_G_prot_signal_superfam	-	no_errors	SNX14	HGNC	ENSG00000135317				138	0	0	45	19	29.6875
ZNF292	0	genome.wustl.edu	37	6	87925676	87925676	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	6	87925676	87925676	T	C	SNP	ZNF292	ENST00000369577	human	ensembl	74_37	+1	known	missense	c.224	p.L75S	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF292	HGNC	ENSG00000188994				52	0	0	32	2	5.88235
EPHA7	0	genome.wustl.edu	37	6	93982022	93982022	+	Silent	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	6	93982022	93982022	G	A	SNP	EPHA7	ENST00000369303	human	ensembl	74_37	-1	known	silent	c.1443	p.Y481	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHA7	HGNC	ENSG00000135333				217	0	0	139	56	28.7179
TSC22D4	0	genome.wustl.edu	37	7	100064674	100064674	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	7	100064674	100064674	G	A	SNP	TSC22D4	ENST00000300181	human	ensembl	74_37	-1	known	missense	c.1096	p.R366C	0.989	pfam_TSC-22_Dip_Bun	pfam_TSC-22_Dip_Bun	-	no_errors	TSC22D4	HGNC	ENSG00000166925				25	0	0	17	11	39.2857
CUX1	0	genome.wustl.edu	37	7	101671385	101671385	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	7	101671385	101671385	G	A	SNP	CUX1	ENST00000360264	human	ensembl	74_37	+1	known	missense	c.182	p.R61H	1.000	NULL	pfam_Hmoeo_CUT,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,superfamily_LemA-like_dom,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Hmoeo_CUT	-	no_errors	CUX1	HGNC	ENSG00000257923				61	0	0	27	2	6.89655
CUX1	0	genome.wustl.edu	37	7	101870917	101870917	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	7	101870917	101870917	G	A	SNP	CUX1	ENST00000360264	human	ensembl	74_37	+1	known	missense	c.3434	p.R1145Q	1.000	pfam_Hmoeo_CUT,superfamily_Lambda_DNA-bd_dom,pfscan_Hmoeo_CUT	pfam_Hmoeo_CUT,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,superfamily_LemA-like_dom,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Hmoeo_CUT	-	no_errors	CUX1	HGNC	ENSG00000257923				91	0	0	38	25	39.6825
ORAI2	0	genome.wustl.edu	37	7	102087196	102087196	+	Silent	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	7	102087196	102087196	C	T	SNP	ORAI2	ENST00000356387	human	ensembl	74_37	+1	known	silent	c.462	p.T154	0.759	pfam_CRAC_channel	pfam_CRAC_channel	-	no_errors	ORAI2	HGNC	ENSG00000160991				180	0	0	171	35	16.9903
PMPCB	0	genome.wustl.edu	37	7	102948086	102948086	+	Silent	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	7	102948086	102948086	C	T	SNP	PMPCB	ENST00000249269	human	ensembl	74_37	+1	known	silent	c.780	p.F260	0.999	pfam_Peptidase_M16_C,superfamily_Metalloenz_LuxS/M16	pfam_Pept_M16_N,pfam_Peptidase_M16_C,superfamily_Metalloenz_LuxS/M16	-	no_errors	PMPCB	HGNC	ENSG00000105819				66	0	0	38	19	33.3333
RELN	0	genome.wustl.edu	37	7	103113285	103113285	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	7	103113285	103113285	G	A	SNP	RELN	ENST00000424685	human	ensembl	74_37	-1	known	nonsense	c.10357	p.R3453*	1.000	NULL	pfam_EGF_extracell,pfam_Reeler_dom,pfam_BNR_rpt,superfamily_Sialidases,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Reeler_dom	-	no_errors	RELN	HGNC	ENSG00000189056				69	0	0	50	27	35.0649
RELN	0	genome.wustl.edu	37	7	103124242	103124242	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	7	103124242	103124242	T	C	SNP	RELN	ENST00000424685	human	ensembl	74_37	-1	known	missense	c.10039	p.S3347G	1.000	NULL	pfam_EGF_extracell,pfam_Reeler_dom,pfam_BNR_rpt,superfamily_Sialidases,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Reeler_dom	-	no_errors	RELN	HGNC	ENSG00000189056				85	0	0	77	40	34.188
ATXN7L1	0	genome.wustl.edu	37	7	105429099	105429099	+	Silent	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	7	105429099	105429099	G	A	SNP	ATXN7L1	ENST00000419735	human	ensembl	74_37	-1	known	silent	c.306	p.C102	1.000	NULL	pfam_SCA7_dom	-	no_errors	ATXN7L1	HGNC	ENSG00000146776				58	0	0	51	22	30.137
LRRN3	0	genome.wustl.edu	37	7	110764026	110764026	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	7	110764026	110764026	C	T	SNP	LRRN3	ENST00000308478	human	ensembl	74_37	+1	known	missense	c.1198	p.P400S	1.000	smart_Cys-rich_flank_reg_C	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_LRR-contain_N,superfamily_Fibronectin_type3,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	LRRN3	HGNC	ENSG00000173114				68	0	0	52	24	31.5789
THSD7A	0	genome.wustl.edu	37	7	11675852	11675852	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	7	11675852	11675852	C	A	SNP	THSD7A	ENST00000423059	human	ensembl	74_37	-1	known	missense	c.927	p.Q309H	1.000	NULL	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD7A	HGNC	ENSG00000005108				113	0	0	65	35	35
GRM8	0	genome.wustl.edu	37	7	126173502	126173502	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	7	126173502	126173502	G	T	SNP	GRM8	ENST00000339582	human	ensembl	74_37	-1	known	missense	c.1934	p.T645K	1.000	pfam_GPCR_3_C,pfscan_GPCR_3_C	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_8,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_4,pfscan_GPCR_3_C	-	no_errors	GRM8	HGNC	ENSG00000179603				59	0	0	38	18	32.1429
FSCN3	0	genome.wustl.edu	37	7	127235874	127235874	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	7	127235874	127235874	C	T	SNP	FSCN3	ENST00000265825	human	ensembl	74_37	+1	known	missense	c.658	p.R220W	0.979	superfamily_Actin_cross-linking	pfam_Fascin-domain,superfamily_Actin_cross-linking	-	no_errors	FSCN3	HGNC	ENSG00000106328				81	0	0	88	5	5.37634
FLNC	0	genome.wustl.edu	37	7	128470957	128470957	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	7	128470957	128470957	G	A	SNP	FLNC	ENST00000325888	human	ensembl	74_37	+1	known	missense	c.266	p.R89H	1.000	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNC	HGNC	ENSG00000128591				71	0	0	52	12	18.75
CNTNAP2	0	genome.wustl.edu	37	7	146741062	146741062	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	7	146741062	146741062	G	A	SNP	CNTNAP2	ENST00000361727	human	ensembl	74_37	+1	known	missense	c.466	p.A156T	0.997	pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl_sf,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,pfam_EG-like_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EG-like_dom,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP2	HGNC	ENSG00000174469				167	0	0	127	45	26.1628
SSPO	0	genome.wustl.edu	37	7	149500830	149500830	+	RNA	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	7	149500830	149500830	C	T	SNP	SSPO	ENST00000378016	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.928	-	-	-	no_errors	SSPO	HGNC	ENSG00000197558				11	0	0	6	5	45.4545
GIMAP7	0	genome.wustl.edu	37	7	150217082	150217082	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	7	150217082	150217082	G	A	SNP	GIMAP7	ENST00000313543	human	ensembl	74_37	+1	known	missense	c.20	p.R7H	0.000	superfamily_P-loop_NTPase	pfam_AIG1,superfamily_P-loop_NTPase	-	no_errors	GIMAP7	HGNC	ENSG00000179144				62	0	0	36	25	40.9836
ASB10	0	genome.wustl.edu	37	7	150883931	150883931	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	7	150883931	150883931	C	G	SNP	ASB10	ENST00000422024	human	ensembl	74_37	-1	known	missense	c.422	p.R141T	1.000	superfamily_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C,prints_Ankyrin_rpt	-	no_errors	ASB10	HGNC	ENSG00000146926				16	0	0	21	5	19.2308
NUB1	0	genome.wustl.edu	37	7	151065014	151065014	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	7	151065014	151065014	A	G	SNP	NUB1	ENST00000568733	human	ensembl	74_37	+1	known	missense	c.1127	p.H376R	1.000	superfamily_UBA-like	pfam_UBA/Ts_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	NUB1	HGNC	ENSG00000013374				15	0	0	4	2	33.3333
PRKAG2	0	genome.wustl.edu	37	7	151329217	151329217	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	7	151329217	151329217	A	C	SNP	PRKAG2	ENST00000287878	human	ensembl	74_37	-1	known	missense	c.692	p.L231R	0.993	NULL	pfam_CBS_dom,smart_CBS_dom	-	no_errors	PRKAG2	HGNC	ENSG00000106617				41	0	0	17	7	29.1667
INTS1	0	genome.wustl.edu	37	7	1514368	1514368	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	7	1514368	1514368	G	A	SNP	INTS1	ENST00000389470	human	ensembl	74_37	-1	known	missense	c.6221	p.A2074V	1.000	NULL	pfam_DUF3677,superfamily_ARM-type_fold	-	no_errors	INTS1	HGNC	ENSG00000164880				8	0	0	5	4	44.4444
INTS1	0	genome.wustl.edu	37	7	1533409	1533409	+	Silent	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	7	1533409	1533409	C	T	SNP	INTS1	ENST00000389470	human	ensembl	74_37	-1	known	silent	c.2433	p.A811	0.478	NULL	pfam_DUF3677,superfamily_ARM-type_fold	-	no_errors	INTS1	HGNC	ENSG00000164880				8	0	0	3	2	40
DFNA5	0	genome.wustl.edu	37	7	24784260	24784260	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	7	24784260	24784260	C	T	SNP	DFNA5	ENST00000342947	human	ensembl	74_37	-1	known	missense	c.325	p.V109I	0.109	pfam_Gasdermin	pfam_Gasdermin	-	no_errors	DFNA5	HGNC	ENSG00000105928				62	0	0	32	23	41.8182
WIPF3	0	genome.wustl.edu	37	7	29915533	29915533	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	7	29915533	29915533	C	T	SNP	WIPF3	ENST00000242140	human	ensembl	74_37	+1	known	missense	c.178	p.R60C	0.203	pfam_WH2_dom,smart_WH2_dom,pfscan_WH2_dom	pfam_WH2_dom,smart_WH2_dom,pfscan_WH2_dom	-	no_errors	WIPF3	HGNC	ENSG00000122574				55	0	0	52	5	8.77193
C7orf41	0	genome.wustl.edu	37	7	30197086	30197086	+	Silent	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	7	30197086	30197086	G	A	SNP	C7orf41	ENST00000324453	human	ensembl	74_37	+1	known	silent	c.318	p.A106	0.001	NULL	NULL	-	no_errors	C7orf41	HGNC	ENSG00000180354				232	1	0.429185	146	65	30.8057
KIAA0895	0	genome.wustl.edu	37	7	36396457	36396457	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	7	36396457	36396457	G	C	SNP	KIAA0895	ENST00000415803	human	ensembl	74_37	-1	known	missense	c.882	p.I294M	0.000	NULL	NULL	-	no_errors	KIAA0895	HGNC	ENSG00000164542				19	0	0	13	5	27.7778
KIAA0895	0	genome.wustl.edu	37	7	36396613	36396613	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	7	36396613	36396613	G	C	SNP	KIAA0895	ENST00000297063	human	ensembl	74_37	-1	known	missense	c.765	p.F255L	1.000	NULL	pfam_DUF1704	-	no_errors	KIAA0895	HGNC	ENSG00000164542				68	0	0	46	25	35.2113
KIAA0895	0	genome.wustl.edu	37	7	36397160	36397160	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	7	36397160	36397160	G	C	SNP	KIAA0895	ENST00000297063	human	ensembl	74_37	-1	known	missense	c.218	p.S73C	0.850	NULL	pfam_DUF1704	-	no_errors	KIAA0895	HGNC	ENSG00000164542				47	0	0	26	14	35
NME8	0	genome.wustl.edu	37	7	37901736	37901736	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	7	37901736	37901736	C	T	SNP	NME8	ENST00000199447	human	ensembl	74_37	+1	known	missense	c.377	p.A126V	0.000	NULL	pfam_Nucleoside_diP_kinase,pfam_Thioredoxin_domain,superfamily_Nucleoside_diP_kinase,superfamily_Thioredoxin-like_fold,smart_Nucleoside_diP_kinase	-	no_errors	NME8	HGNC	ENSG00000086288				36	0	0	29	9	23.6842
SDK1	0	genome.wustl.edu	37	7	4188998	4188998	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	7	4188998	4188998	C	T	SNP	SDK1	ENST00000404826	human	ensembl	74_37	+1	known	missense	c.4528	p.R1510W	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	SDK1	HGNC	ENSG00000146555				16	0	0	7	4	36.3636
CCM2	0	genome.wustl.edu	37	7	45115406	45115406	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	7	45115406	45115406	G	A	SNP	CCM2	ENST00000381112	human	ensembl	74_37	+1	known	missense	c.1148	p.S383N	1.000	NULL	pfscan_PTB/PI_dom	-	no_errors	CCM2	HGNC	ENSG00000136280				76	0	0	52	15	22.3881
TNS3	0	genome.wustl.edu	37	7	47333332	47333332	+	Silent	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	7	47333332	47333332	G	A	SNP	TNS3	ENST00000311160	human	ensembl	74_37	-1	known	silent	c.3771	p.F1257	0.008	pfam_SH2,smart_SH2,pfscan_SH2	pfam_PTB,pfam_Tensin_phosphatase_C2-dom,pfam_SH2,superfamily_C2_dom,smart_Tyr_Pase_cat,smart_SH2,smart_PTB/PI_dom,pfscan_SH2,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TNS3	HGNC	ENSG00000136205				104	0	0	83	21	20.1923
TMEM248	0	genome.wustl.edu	37	7	66413644	66413644	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	7	66413644	66413644	A	G	SNP	TMEM248	ENST00000341567	human	ensembl	74_37	+1	known	missense	c.559	p.T187A	1.000	NULL	NULL	-	no_errors	TMEM248	HGNC	ENSG00000106609				62	0	0	52	3	5.45455
HIP1	0	genome.wustl.edu	37	7	75168711	75168711	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	7	75168711	75168711	C	T	SNP	HIP1	ENST00000336926	human	ensembl	74_37	-1	known	missense	c.2993	p.R998H	1.000	pfam_ILWEQ_dom,smart_ILWEQ_dom,pfscan_ILWEQ_dom	pfam_ANTH_dom,pfam_ILWEQ_dom,pfam_Epsin_dom_N,superfamily_ENTH_VHS,superfamily_ARM-type_fold,superfamily_Prefoldin,smart_Epsin-like_N,smart_ILWEQ_dom,pfscan_Epsin-like_N,pfscan_ILWEQ_dom	-	no_errors	HIP1	HGNC	ENSG00000127946				292	0	0	191	58	23.2932
MAGI2	0	genome.wustl.edu	37	7	77814969	77814969	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	7	77814969	77814969	G	T	SNP	MAGI2	ENST00000354212	human	ensembl	74_37	-1	known	missense	c.2288	p.T763N	1.000	superfamily_PDZ	pfam_PDZ,pfam_WW_dom,pfam_GK/Ca_channel_bsu,superfamily_PDZ,superfamily_P-loop_NTPase,superfamily_WW_dom,smart_PDZ,smart_GK/Ca_channel_bsu,smart_WW_dom,pfscan_PDZ,pfscan_WW_dom,pfscan_Guanylate_kin-like	-	no_errors	MAGI2	HGNC	ENSG00000187391				91	0	0	74	27	26.7327
GRM3	0	genome.wustl.edu	37	7	86468840	86468840	+	Silent	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	7	86468840	86468840	C	T	SNP	GRM3	ENST00000361669	human	ensembl	74_37	+1	known	silent	c.2010	p.F670	0.949	pfam_GPCR_3_C,pfscan_GPCR_3_C,prints_GPCR_3	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_3,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_2,prints_GPCR_3_GABA_rcpt_B	-	no_errors	GRM3	HGNC	ENSG00000198822				116	0	0	113	8	6.61157
ABCB4	0	genome.wustl.edu	37	7	87076415	87076415	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	7	87076415	87076415	G	T	SNP	ABCB4	ENST00000265723	human	ensembl	74_37	-1	known	missense	c.940	p.L314M	0.986	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,pfam_ABC_ATPase_put,pfam_Zeta_toxin_domain,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCB4	HGNC	ENSG00000005471				66	0	0	34	3	8.10811
SLC25A13	0	genome.wustl.edu	37	7	95906629	95906629	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	7	95906629	95906629	C	T	SNP	SLC25A13	ENST00000416240	human	ensembl	74_37	-1	known	missense	c.91	p.G31S	1.000	NULL	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_EF_hand_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	-	no_errors	SLC25A13	HGNC	ENSG00000004864				45	0	0	27	8	22.8571
RIMS2	0	genome.wustl.edu	37	8	105161049	105161049	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	8	105161049	105161049	C	T	SNP	RIMS2	ENST00000436393	human	ensembl	74_37	+1	novel	missense	c.3361	p.R1121C	1.000	NULL	pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ	-	no_errors	RIMS2	HGNC	ENSG00000176406				94	0	0	68	20	22.7273
DCSTAMP	0	genome.wustl.edu	37	8	105361503	105361503	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	8	105361503	105361503	G	T	SNP	DCSTAMP	ENST00000297581	human	ensembl	74_37	+1	known	missense	c.723	p.K241N	0.994	NULL	pfam_DC_STAMP-like,superfamily_ABC1_TM_dom	-	no_errors	DCSTAMP	HGNC	ENSG00000164935				82	0	0	44	16	26.6667
CTSB	0	genome.wustl.edu	37	8	11703216	11703216	+	Silent	SNP	G	G	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	8	11703216	11703216	G	T	SNP	CTSB	ENST00000345125	human	ensembl	74_37	-1	known	silent	c.876	p.P292	0.998	pfam_Peptidase_C1A_C,smart_Peptidase_C1A_C	pfam_Peptidase_C1A_C,pfam_Propeptide_C1A,smart_Peptidase_C1A_C,prints_Peptidase_C1A_C	-	no_errors	CTSB	HGNC	ENSG00000164733				61	0	0	39	19	32.7586
FER1L6	0	genome.wustl.edu	37	8	125083798	125083798	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	8	125083798	125083798	G	A	SNP	FER1L6	ENST00000399018	human	ensembl	74_37	+1	known	missense	c.4018	p.G1340R	0.898	superfamily_C2_dom	pfam_C2_dom,pfam_Ferlin_B-domain,pfam_FerIin-domain,superfamily_C2_dom,superfamily_ABC1_TM_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	FER1L6	HGNC	ENSG00000214814				65	0	0	47	27	36.4865
ENSG00000223697	0	genome.wustl.edu	37	8	133851615	133851615	+	RNA	SNP	A	A	G			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	8	133851615	133851615	A	G	SNP	ENSG00000223697	ENST00000429151	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	AF230666.2	Clone_based_vega_gene	ENSG00000223697				97	0	0	73	30	29.1262
TG	0	genome.wustl.edu	37	8	133898733	133898733	+	Silent	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	8	133898733	133898733	G	A	SNP	TG	ENST00000220616	human	ensembl	74_37	+1	known	silent	c.1116	p.L372	1.000	pirsf_Thyroglobulin	pfam_Thyroglobulin_1,pfam_CarbesteraseB,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,pirsf_Thyroglobulin,pfscan_Thyroglobulin_1	-	no_errors	TG	HGNC	ENSG00000042832				132	1	0.75188	92	47	33.8129
WISP1	0	genome.wustl.edu	37	8	134239730	134239730	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	8	134239730	134239730	G	A	SNP	WISP1	ENST00000250160	human	ensembl	74_37	+1	known	missense	c.881	p.R294H	0.075	pfam_Cys_knot,smart_Cys_knot_C,pirsf_IGFBP_CNN,pfscan_Cys_knot_C	pfam_IGFBP-like,pfam_VWF_C,pfam_Cys_knot,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_IGFBP-like,smart_VWF_C,smart_Thrombospondin_1_rpt,smart_Cys_knot_C,pirsf_IGFBP_CNN,pfscan_Cys_knot_C,pfscan_Thrombospondin_1_rpt,pfscan_VWF_C	-	no_errors	WISP1	HGNC	ENSG00000104415				95	0	0	86	8	8.51064
KCNK9	0	genome.wustl.edu	37	8	140631311	140631311	+	Silent	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	8	140631311	140631311	C	T	SNP	KCNK9	ENST00000303015	human	ensembl	74_37	-1	known	silent	c.315	p.A105	0.037	pfam_2pore_dom_K_chnl_dom,pirsf_2pore_dom_K_chnl_TASK,prints_2pore_dom_K_chnl	pfam_2pore_dom_K_chnl_dom,pirsf_2pore_dom_K_chnl_TASK,prints_2pore_dom_K_chnl_TASK,prints_KCNK9,prints_2pore_dom_K_chnl	-	no_errors	KCNK9	HGNC	ENSG00000169427				24	0	0	19	11	36.6667
SCRT1	0	genome.wustl.edu	37	8	145557213	145557213	+	Silent	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	8	145557213	145557213	G	A	SNP	SCRT1	ENST00000332135	human	ensembl	74_37	-1	known	silent	c.681	p.C227	1.000	smart_Znf_C2H2-like	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SCRT1	HGNC	ENSG00000170616				20	0	0	8	10	55.5556
LRRC14	0	genome.wustl.edu	37	8	145749487	145749487	+	RNA	SNP	G	G	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	8	145749487	145749487	G	T	SNP	LRRC14	ENST00000528528	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.022	-	-	-	no_errors	LRRC14	HGNC	ENSG00000160959				167	0	0	113	37	24.6667
TUSC3	0	genome.wustl.edu	37	8	15601103	15601103	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	8	15601103	15601103	G	A	SNP	TUSC3	ENST00000503731	human	ensembl	74_37	+1	known	missense	c.919	p.D307N	1.000	pfam_OligosaccharylTrfase_OST3/OST6	pfam_OligosaccharylTrfase_OST3/OST6,pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	-	no_errors	TUSC3	HGNC	ENSG00000104723				157	0	0	78	36	31.5789
NAT2	0	genome.wustl.edu	37	8	18258064	18258064	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	8	18258064	18258064	A	C	SNP	NAT2	ENST00000286479	human	ensembl	74_37	+1	known	missense	c.551	p.K184T	0.000	pfam_Arylamine_N-AcTrfase	pfam_Arylamine_N-AcTrfase,prints_Arylamine_N-AcTrfase	-	no_errors	NAT2	HGNC	ENSG00000156006				64	0	0	22	19	46.3415
ATP6V1B2	0	genome.wustl.edu	37	8	20072357	20072357	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	8	20072357	20072357	G	C	SNP	ATP6V1B2	ENST00000276390	human	ensembl	74_37	+1	known	missense	c.956	p.G319A	1.000	pfam_ATPase_F1/V1/A1_a/bsu_nucl-bd,superfamily_P-loop_NTPase,tigrfam_ATPase_V1-cplx_bsu	pfam_ATPase_F1/V1/A1_a/bsu_nucl-bd,pfam_ATPase_F1/V1/A1-cplx_a/bsu_C,pfam_ATPase_F1_a/bsu_N,superfamily_P-loop_NTPase,superfamily_ATPase_F1/V1/A1-cplx_a/bsu_C,tigrfam_ATPase_V1-cplx_bsu	-	no_errors	ATP6V1B2	HGNC	ENSG00000147416				63	0	0	61	8	11.5942
NEFM	0	genome.wustl.edu	37	8	24771944	24771944	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	8	24771944	24771944	C	T	SNP	NEFM	ENST00000221166	human	ensembl	74_37	+1	known	missense	c.638	p.A213V	0.998	pfam_IF,prints_Keratin_I	pfam_IF,pfam_Intermed_filament_DNA-bd,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	NEFM	HGNC	ENSG00000104722				26	0	0	13	9	40.9091
SCARA5	0	genome.wustl.edu	37	8	27779236	27779236	+	Silent	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	8	27779236	27779236	G	A	SNP	SCARA5	ENST00000354914	human	ensembl	74_37	-1	known	silent	c.768	p.S256	0.986	NULL	pfam_SRCR,pfam_Collagen,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,prints_SRCR,pfscan_SRCR	-	no_errors	SCARA5	HGNC	ENSG00000168079				11	0	0	5	3	37.5
KIF13B	0	genome.wustl.edu	37	8	28976394	28976394	+	Silent	SNP	A	A	G			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	8	28976394	28976394	A	G	SNP	KIF13B	ENST00000524189	human	ensembl	74_37	-1	known	silent	c.3651	p.H1217	1.000	pfam_Kinesin-like	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_CAP-Gly_domain,pfam_KIF1B,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_CAP-Gly_domain,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,pfscan_CAP-Gly_domain,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF13B	HGNC	ENSG00000197892				132	0	0	101	14	12.1739
KAT6A	0	genome.wustl.edu	37	8	41836217	41836217	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	8	41836217	41836217	C	T	SNP	KAT6A	ENST00000265713	human	ensembl	74_37	-1	known	missense	c.986	p.R329Q	1.000	superfamily_Znf_FYVE_PHD	pfam_MOZ_SAS,pfam_Znf_PHD-finger,superfamily_Acyl_CoA_acyltransferase,superfamily_Znf_FYVE_PHD,smart_Histone_H1/H5_H15,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	KAT6A	HGNC	ENSG00000083168				228	0	0	149	56	27.3171
KAT6A	0	genome.wustl.edu	37	8	41839431	41839431	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	8	41839431	41839431	G	A	SNP	KAT6A	ENST00000265713	human	ensembl	74_37	-1	known	nonsense	c.751	p.R251*	0.998	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	pfam_MOZ_SAS,pfam_Znf_PHD-finger,superfamily_Acyl_CoA_acyltransferase,superfamily_Znf_FYVE_PHD,smart_Histone_H1/H5_H15,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	KAT6A	HGNC	ENSG00000083168				40	0	0	40	8	16.6667
PLAG1	0	genome.wustl.edu	37	8	57080658	57080658	+	Silent	SNP	T	T	C			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	8	57080658	57080658	T	C	SNP	PLAG1	ENST00000316981	human	ensembl	74_37	-1	known	silent	c.171	p.T57	1.000	pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	PLAG1	HGNC	ENSG00000181690				57	0	0	32	11	25.5814
MIR124-2	0	genome.wustl.edu	37	8	65291742	65291742	+	RNA	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	8	65291742	65291742	G	A	SNP	MIR124-2	ENST00000385081	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MIR124-2	HGNC	ENSG00000207816				44	0	0	20	14	41.1765
CYP7B1	0	genome.wustl.edu	37	8	65527633	65527633	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	8	65527633	65527633	C	A	SNP	CYP7B1	ENST00000310193	human	ensembl	74_37	-1	known	missense	c.1007	p.G336V	0.986	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I,prints_Cyt_P450	-	no_errors	CYP7B1	HGNC	ENSG00000172817				86	0	0	67	28	29.4737
SULF1	0	genome.wustl.edu	37	8	70476305	70476305	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	8	70476305	70476305	G	A	SNP	SULF1	ENST00000260128	human	ensembl	74_37	+1	known	missense	c.95	p.G32E	1.000	pirsf_Extracellular_sulfatase	pfam_Sulfatase,pfam_Extracellular_sulfatase_C,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core,pirsf_Extracellular_sulfatase	-	no_errors	SULF1	HGNC	ENSG00000137573				96	0	0	82	6	6.81818
STAU2	0	genome.wustl.edu	37	8	74515987	74515987	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	8	74515987	74515987	G	A	SNP	STAU2	ENST00000524300	human	ensembl	74_37	-1	known	missense	c.1003	p.P335S	1.000	pfam_dsRNA-bd_dom,smart_dsRNA-bd_dom,pfscan_dsRNA-bd_dom	pfam_dsRNA-bd_dom,smart_dsRNA-bd_dom,pfscan_dsRNA-bd_dom	-	no_errors	STAU2	HGNC	ENSG00000040341				92	0	0	55	18	24.6575
ZFHX4	0	genome.wustl.edu	37	8	77768138	77768138	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	8	77768138	77768138	C	A	SNP	ZFHX4	ENST00000521891	human	ensembl	74_37	+1	known	missense	c.8981	p.P2994H	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656				20	0	0	12	5	29.4118
DPY19L4	0	genome.wustl.edu	37	8	95751977	95751977	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	8	95751977	95751977	G	A	SNP	DPY19L4	ENST00000414645	human	ensembl	74_37	+1	known	nonsense	c.570	p.W190*	1.000	pfam_Dpy-19	pfam_Dpy-19	-	no_errors	DPY19L4	HGNC	ENSG00000156162				263	0	0	179	53	22.8448
C9orf156	0	genome.wustl.edu	37	9	100678467	100678467	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	9	100678467	100678467	A	G	SNP	C9orf156	ENST00000375119	human	ensembl	74_37	-1	known	missense	c.230	p.L77P	1.000	pfam_UPF0066,superfamily_UPF0066_YaeB,tigrfam_UPF0066	pfam_UPF0066,superfamily_UPF0066_YaeB,tigrfam_UPF0066	-	no_errors	C9orf156	HGNC	ENSG00000136932				46	0	0	28	4	12.5
ANKS6	0	genome.wustl.edu	37	9	101547146	101547146	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	9	101547146	101547146	C	T	SNP	ANKS6	ENST00000375018	human	ensembl	74_37	-1	known	missense	c.875	p.R292K	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_SAM_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SAM,prints_Ankyrin_rpt	-	no_errors	ANKS6	HGNC	ENSG00000165138				74	0	0	38	15	28.3019
COL15A1	0	genome.wustl.edu	37	9	101747954	101747954	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	9	101747954	101747954	G	A	SNP	COL15A1	ENST00000375001	human	ensembl	74_37	+1	known	missense	c.208	p.G70R	0.181	superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	pfam_Collagenase_NC10/endostatin,pfam_Collagen,superfamily_C-type_lectin_fold,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	-	no_errors	COL15A1	HGNC	ENSG00000204291				43	0	0	41	17	29.3103
ABCA1	0	genome.wustl.edu	37	9	107589231	107589231	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	9	107589231	107589231	C	T	SNP	ABCA1	ENST00000374736	human	ensembl	74_37	-1	known	missense	c.2335	p.A779T	0.396	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA1	HGNC	ENSG00000165029				45	0	0	44	15	25.4237
ACTL7A	0	genome.wustl.edu	37	9	111625036	111625036	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	9	111625036	111625036	C	T	SNP	ACTL7A	ENST00000333999	human	ensembl	74_37	+1	known	missense	c.434	p.T145I	0.750	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,smart_Actin-related,prints_Actin-related	-	no_errors	ACTL7A	HGNC	ENSG00000187003				52	0	0	40	20	33.3333
PTPN3	0	genome.wustl.edu	37	9	112207536	112207536	+	Silent	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	9	112207536	112207536	C	T	SNP	PTPN3	ENST00000374541	human	ensembl	74_37	-1	known	silent	c.450	p.A150	0.755	pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pirsf_Tyr_Pase_non-rcpt_typ-3/4,prints_Band_41_fam,prints_Ez/rad/moesin_like,pfscan_FERM_domain	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_PDZ,pfam_Dual-sp_phosphatase_cat-dom,superfamily_FERM_central,superfamily_PDZ,smart_Band_41_domain,smart_PDZ,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-3/4,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam,prints_Ez/rad/moesin_like,pfscan_FERM_domain,pfscan_PDZ,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN3	HGNC	ENSG00000070159				65	0	0	44	14	24.1379
SVEP1	0	genome.wustl.edu	37	9	113245948	113245948	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	9	113245948	113245948	C	A	SNP	SVEP1	ENST00000401783	human	ensembl	74_37	-1	known	missense	c.1956	p.W652C	1.000	pfam_Hyalin,pfscan_Hyalin	pfam_Sushi_SCR_CCP,pfam_EG-like_dom,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_Hyalin,pfam_VWF_A,pfam_Pentaxin,pfam_EGF_extracell,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Sushi_SCR_CCP,superfamily_Growth_fac_rcpt_N_dom,smart_VWF_A,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Pentaxin,pfscan_EG-like_dom,pfscan_Hyalin,pfscan_Sushi_SCR_CCP,pfscan_VWF_A,prints_Pentaxin	-	no_errors	SVEP1	HGNC	ENSG00000165124				37	0	0	15	14	48.2759
PTGR1	0	genome.wustl.edu	37	9	114345823	114345823	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	9	114345823	114345823	C	T	SNP	PTGR1	ENST00000309195	human	ensembl	74_37	-1	known	missense	c.424	p.G142R	1.000	superfamily_GroES-like,smart_PKS_ER,tigrfam_B4_12hDH	pfam_ADH_C,superfamily_GroES-like,smart_PKS_ER,tigrfam_B4_12hDH	-	no_errors	PTGR1	HGNC	ENSG00000106853				177	0	0	158	9	5.38922
ZNF618	0	genome.wustl.edu	37	9	116750765	116750765	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	9	116750765	116750765	A	G	SNP	ZNF618	ENST00000374126	human	ensembl	74_37	+1	known	missense	c.242	p.K81R	1.000	NULL	superfamily_RNaseH-like_dom,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF618	HGNC	ENSG00000157657				28	0	0	22	11	33.3333
PAPPA	0	genome.wustl.edu	37	9	119130012	119130012	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	9	119130012	119130012	G	A	SNP	PAPPA	ENST00000328252	human	ensembl	74_37	+1	known	nonsense	c.4584	p.W1528*	1.000	NULL	pfam_Sushi_SCR_CCP,pfam_Notch_dom,pfam_Peptidase_M43,superfamily_ConA-like_lec_gl_sf,superfamily_Sushi_SCR_CCP,superfamily_Fibronectin_type3,superfamily_Notch_dom,smart_LamG-like,smart_Notch_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,tigrfam_Myxo_disulph_rpt	-	no_errors	PAPPA	HGNC	ENSG00000182752				58	0	0	40	13	24.5283
DAB2IP	0	genome.wustl.edu	37	9	124532938	124532938	+	Silent	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	9	124532938	124532938	G	A	SNP	DAB2IP	ENST00000408936	human	ensembl	74_37	+1	known	silent	c.2013	p.P671	0.007	pfam_DUF3498	pfam_DUF3498,pfam_RasGAP,pfam_C2_dom,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_Pleckstrin_homology,smart_C2_dom,smart_RasGAP,pfscan_Pleckstrin_homology,pfscan_RasGAP	-	no_errors	DAB2IP	HGNC	ENSG00000136848				44	0	0	31	15	32.6087
ZBTB6	0	genome.wustl.edu	37	9	125673938	125673938	+	Silent	SNP	T	T	C			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	9	125673938	125673938	T	C	SNP	ZBTB6	ENST00000373659	human	ensembl	74_37	-1	known	silent	c.414	p.Q138	0.166	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB6	HGNC	ENSG00000186130				74	0	0	56	4	6.66667
ENSG00000234921	0	genome.wustl.edu	37	9	126794688	126794688	+	RNA	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	9	126794688	126794688	G	A	SNP	ENSG00000234921	ENST00000429482	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-85O21.5	Clone_based_vega_gene	ENSG00000234921				92	0	0	51	28	35.443
TBC1D13	0	genome.wustl.edu	37	9	131568559	131568559	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	9	131568559	131568559	G	A	SNP	TBC1D13	ENST00000372648	human	ensembl	74_37	+1	known	missense	c.1106	p.G369E	1.000	superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D13	HGNC	ENSG00000107021				82	0	0	55	16	22.5352
GFI1B	0	genome.wustl.edu	37	9	135862760	135862760	+	Silent	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	9	135862760	135862760	G	A	SNP	GFI1B	ENST00000339463	human	ensembl	74_37	+1	known	silent	c.192	p.P64	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GFI1B	HGNC	ENSG00000165702				48	0	0	45	14	23.7288
SARDH	0	genome.wustl.edu	37	9	136597638	136597638	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	9	136597638	136597638	C	A	SNP	SARDH	ENST00000371872	human	ensembl	74_37	-1	known	missense	c.417	p.E139D	1.000	pfam_FAD-dep_OxRdtase	pfam_FAD-dep_OxRdtase,pfam_GCV_T_N,pfam_GCV_T_C	-	no_errors	SARDH	HGNC	ENSG00000123453				224	0	0	155	49	24.0196
RXRA	0	genome.wustl.edu	37	9	137328340	137328340	+	Silent	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	9	137328340	137328340	G	A	SNP	RXRA	ENST00000481739	human	ensembl	74_37	+1	known	silent	c.1269	p.P423	0.003	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Str_hrmn_rcpt,prints_COUP_TF	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Nuc_recep-AF1,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Retinoid-X_rcpt/HNF4,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_COUP_TF,prints_Retinoic_acid_rcpt	-	no_errors	RXRA	HGNC	ENSG00000186350				91	0	0	72	6	7.69231
CAMSAP1	0	genome.wustl.edu	37	9	138713536	138713536	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	9	138713536	138713536	C	T	SNP	CAMSAP1	ENST00000409386	human	ensembl	74_37	-1	known	missense	c.3004	p.V1002M	0.010	NULL	pfam_CKK_domain,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_PRC_barrel-like,superfamily_CH-domain	-	no_errors	CAMSAP1	HGNC	ENSG00000130559				23	0	0	15	11	42.3077
SLC34A3	0	genome.wustl.edu	37	9	140127502	140127502	+	Silent	SNP	A	A	G			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	9	140127502	140127502	A	G	SNP	SLC34A3	ENST00000361134	human	ensembl	74_37	+1	known	silent	c.495	p.V165	0.997	pfam_Na/Pi_transpt,tigrfam_Na/Pi_transpt	pfam_Na/Pi_transpt,tigrfam_Na/Pi_transpt	-	no_errors	SLC34A3	HGNC	ENSG00000198569				46	0	0	24	4	14.2857
CACNA1B	0	genome.wustl.edu	37	9	140773613	140773613	+	Splice_Site	SNP	T	T	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	9	140773613	140773613	T	A	SNP	CACNA1B	ENST00000371355	human	ensembl	74_37	+1	known	splice_site	c.390+2	e2+2	1.000	-	-	-	no_errors	CACNA1B	HGNC	ENSG00000148408				22	0	0	18	3	14.2857
ENSG00000265194	0	genome.wustl.edu	37	9	21861867	21861867	+	RNA	SNP	C	C	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	9	21861867	21861867	C	A	SNP	ENSG00000265194	ENST00000581788	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-70L8.4	Clone_based_vega_gene	ENSG00000265194				8	0	0	4	4	50
DDX58	0	genome.wustl.edu	37	9	32526164	32526164	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	9	32526164	32526164	T	C	SNP	DDX58	ENST00000379883	human	ensembl	74_37	-1	known	missense	c.1	p.M1V	0.957	superfamily_DEATH-like_dom	pfam_RIG-I_C-RD,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_DEATH-like_dom,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX58	HGNC	ENSG00000107201				34	0	0	22	13	37.1429
DOCK8	0	genome.wustl.edu	37	9	332438	332438	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	9	332438	332438	C	T	SNP	DOCK8	ENST00000453981	human	ensembl	74_37	+1	known	missense	c.1085	p.A362V	1.000	NULL	pfam_DOCK_C,pfam_DOCK_C/D_N,superfamily_ARM-type_fold	-	no_errors	DOCK8	HGNC	ENSG00000107099				67	0	0	51	3	5.55556
PGM5	0	genome.wustl.edu	37	9	70993152	70993152	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	9	70993152	70993152	C	T	SNP	PGM5	ENST00000396396	human	ensembl	74_37	+1	known	missense	c.299	p.S100L	1.000	pfam_A-D-PHexomutase_a/b/a-I,superfamily_A-D-PHexomutase_a/b/a-I/II/III	pfam_A-D-PHexomutase_a/b/a-I,pfam_A-D-PHexomutase_a/b/a-III,pfam_A-D-PHexomutase_a/b/a-II,superfamily_A-D-PHexomutase_a/b/a-I/II/III,prints_Alpha-D-phosphohexomutase_SF	-	no_errors	PGM5	HGNC	ENSG00000154330				39	0	0	56	12	17.6471
AGTPBP1	0	genome.wustl.edu	37	9	88190328	88190328	+	Silent	SNP	T	T	C			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	9	88190328	88190328	T	C	SNP	AGTPBP1	ENST00000376109	human	ensembl	74_37	-1	known	silent	c.3441	p.L1147	0.997	NULL	pfam_Peptidase_M14,superfamily_ARM-type_fold	-	no_errors	AGTPBP1	HGNC	ENSG00000135049				136	0	0	58	22	27.5
ROR2	0	genome.wustl.edu	37	9	94493197	94493197	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	9	94493197	94493197	G	A	SNP	ROR2	ENST00000375708	human	ensembl	74_37	-1	known	missense	c.1178	p.S393L	0.827	pirsf_Tyr_kinase_rcpt_ROR,pfam_Kringle,superfamily_Kringle-like,smart_Kringle,pfscan_Kringle	pirsf_Tyr_kinase_rcpt_ROR,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Kringle,pfam_Frizzled_dom,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Kinase-like_dom,superfamily_Kringle-like,superfamily_Frizzled_dom,smart_Ig_sub,smart_Ig_sub2,smart_Kringle,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Frizzled_dom,pfscan_Kringle,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	ROR2	HGNC	ENSG00000169071				122	0	0	74	36	32.7273
ASPN	0	genome.wustl.edu	37	9	95219673	95219673	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	9	95219673	95219673	A	G	SNP	ASPN	ENST00000375544	human	ensembl	74_37	-1	known	missense	c.1040	p.I347T	1.000	pirsf_SLRP_I_decor/aspor/byglycan	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,pirsf_SLRP_I_decor/aspor/byglycan	-	no_errors	ASPN	HGNC	ENSG00000106819				66	0	0	63	13	17.1053
ZNF484	0	genome.wustl.edu	37	9	95609710	95609710	+	Silent	SNP	T	T	C			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	9	95609710	95609710	T	C	SNP	ZNF484	ENST00000395506	human	ensembl	74_37	-1	known	silent	c.1365	p.S455	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF484	HGNC	ENSG00000127081				63	0	0	42	13	23.6364
SUSD3	0	genome.wustl.edu	37	9	95838255	95838255	+	Splice_Site	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	9	95838255	95838255	G	A	SNP	SUSD3	ENST00000375472	human	ensembl	74_37	+1	known	splice_site	c.277+1	e2+1	0.994	-	-	-	no_errors	SUSD3	HGNC	ENSG00000157303				49	0	0	47	4	7.84314
PTCH1	0	genome.wustl.edu	37	9	98244469	98244469	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	9	98244469	98244469	G	A	SNP	PTCH1	ENST00000331920	human	ensembl	74_37	-1	known	missense	c.601	p.H201Y	1.000	tigrfam_TM_rcpt_patched	pfam_Patched,pfscan_SSD,tigrfam_TM_rcpt_patched	-	no_errors	PTCH1	HGNC	ENSG00000185920				52	0	0	15	11	42.3077
MT-ND5	0	genome.wustl.edu	37	MT	13970	13970	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	MT	13970	13970	G	A	SNP	MT-ND5	ENST00000361567	human	ensembl	74_37	+1	known	missense	c.1634	p.S545N	NULL	pfam_NADH_DH_su5_C	pfam_NADH_UbQ/plastoQ_OxRdtase,pfam_NADH_DH_su5_C,pfam_NADH_UbQ_OxRdtase_chain5/L_N,tigrfam_NADHpl_OxRdtase_5	-	no_errors	MT-ND5	HGNC	ENSG00000198786				25	0	0	0	6	100
CSTF2	0	genome.wustl.edu	37	X	100077380	100077380	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	X	100077380	100077380	C	T	SNP	CSTF2	ENST00000415585	human	ensembl	74_37	+1	known	missense	c.278	p.A93V	1.000	pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CSTF2	HGNC	ENSG00000101811				36	0	0	35	10	22.2222
PLP1	0	genome.wustl.edu	37	X	103041710	103041710	+	RNA	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	X	103041710	103041710	C	T	SNP	PLP1	ENST00000465975	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.998	-	-	-	no_errors	PLP1	HGNC	ENSG00000123560				40	0	0	13	27	67.5
DCAF12L1	0	genome.wustl.edu	37	X	125685490	125685490	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	X	125685490	125685490	C	T	SNP	DCAF12L1	ENST00000371126	human	ensembl	74_37	-1	known	missense	c.1102	p.G368S	0.996	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF12L1	HGNC	ENSG00000198889				33	0	0	22	5	18.5185
IGSF1	0	genome.wustl.edu	37	X	130408768	130408768	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	X	130408768	130408768	G	T	SNP	IGSF1	ENST00000370903	human	ensembl	74_37	-1	known	missense	c.3571	p.P1191T	0.989	smart_Ig_sub,smart_Ig_sub2	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	IGSF1	HGNC	ENSG00000147255				123	0	0	83	9	9.78261
LDOC1	0	genome.wustl.edu	37	X	140271020	140271020	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	X	140271020	140271020	G	A	SNP	LDOC1	ENST00000370526	human	ensembl	74_37	-1	known	missense	c.187	p.R63W	0.957	NULL	NULL	-	no_errors	LDOC1	HGNC	ENSG00000182195				32	0	0	7	20	74.0741
CXorf40B	0	genome.wustl.edu	37	X	149101879	149101879	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	X	149101879	149101879	G	A	SNP	CXorf40B	ENST00000355203	human	ensembl	74_37	-1	known	missense	c.214	p.L72F	0.009	superfamily_PUA-like_domain	superfamily_PUA-like_domain	-	no_errors	CXorf40B	HGNC	ENSG00000197021				123	0	0	57	42	42.4242
CXorf40B	0	genome.wustl.edu	37	X	149101975	149101975	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	X	149101975	149101975	C	T	SNP	CXorf40B	ENST00000355203	human	ensembl	74_37	-1	known	missense	c.118	p.A40T	0.982	superfamily_PUA-like_domain	superfamily_PUA-like_domain	-	no_errors	CXorf40B	HGNC	ENSG00000197021				48	0	0	10	24	70.5882
ZNF185	0	genome.wustl.edu	37	X	152085675	152085675	+	Silent	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	X	152085675	152085675	G	A	SNP	ZNF185	ENST00000370270	human	ensembl	74_37	+1	known	silent	c.225	p.R75	0.237	NULL	smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	ZNF185	HGNC	ENSG00000147394				43	0	0	35	11	23.913
ASMTL	0	genome.wustl.edu	37	X	1537979	1537979	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	X	1537979	1537979	C	T	SNP	ASMTL	ENST00000381317	human	ensembl	74_37	-1	known	missense	c.1274	p.R425Q	0.240	pfam_O_MeTrfase_2	pfam_Maf,pfam_O_MeTrfase_2,tigrfam_Maf	-	no_errors	ASMTL	HGNC	ENSG00000169093				19	0	0	13	2	13.3333
CTAG2	0	genome.wustl.edu	37	X	153881608	153881608	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	X	153881608	153881608	G	A	SNP	CTAG2	ENST00000369585	human	ensembl	74_37	-1	known	missense	c.182	p.P61L	0.000	NULL	pfam_EKC/KEOPS_Pcc1	-	no_errors	CTAG2	HGNC	ENSG00000126890				10	0	0	2	5	71.4286
BRCC3	0	genome.wustl.edu	37	X	154305518	154305518	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	X	154305518	154305518	T	C	SNP	BRCC3	ENST00000399042	human	ensembl	74_37	+1	known	missense	c.269	p.V90A	1.000	pfam_JAB_MPN_dom,smart_JAB_MPN_dom	pfam_JAB_MPN_dom,smart_JAB_MPN_dom	-	no_errors	BRCC3	HGNC	ENSG00000185515				54	0	0	19	26	57.7778
P2RY8	0	genome.wustl.edu	37	X	1584882	1584882	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	X	1584882	1584882	C	A	SNP	P2RY8	ENST00000381297	human	ensembl	74_37	-1	known	missense	c.570	p.W190C	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Protea_act_rcpt	-	no_errors	P2RY8	HGNC	ENSG00000182162				62	0	0	52	4	7.14286
PCYT1B	0	genome.wustl.edu	37	X	24608251	24608251	+	Silent	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	X	24608251	24608251	G	A	SNP	PCYT1B	ENST00000379144	human	ensembl	74_37	-1	known	silent	c.375	p.T125	0.004	pfam_Cyt_trans-like,tigrfam_Cyt_trans-like	pfam_Cyt_trans-like,tigrfam_Cyt_trans-like	-	no_errors	PCYT1B	HGNC	ENSG00000102230				33	0	0	7	22	75.8621
FAM47B	0	genome.wustl.edu	37	X	34962029	34962029	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	X	34962029	34962029	C	T	SNP	FAM47B	ENST00000329357	human	ensembl	74_37	+1	known	missense	c.1081	p.R361W	0.001	NULL	NULL	-	no_errors	FAM47B	HGNC	ENSG00000189132				27	0	0	11	13	54.1667
DDX3X	0	genome.wustl.edu	37	X	41201759	41201759	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	X	41201759	41201759	G	A	SNP	DDX3X	ENST00000399959	human	ensembl	74_37	+1	known	missense	c.296	p.R99H	1.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX3X	HGNC	ENSG00000215301				45	0	0	43	3	6.52174
AR	0	genome.wustl.edu	37	X	66765081	66765081	+	Silent	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	X	66765081	66765081	C	T	SNP	AR	ENST00000374690	human	ensembl	74_37	+1	known	silent	c.93	p.R31	1.000	pfam_Andrgn_rcpt,prints_Andrgn_rcpt	pfam_Andrgn_rcpt,pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Andrgn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	AR	HGNC	ENSG00000169083				30	0	0	9	18	66.6667
MED12	0	genome.wustl.edu	37	X	70360635	70360635	+	Silent	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	X	70360635	70360635	G	A	SNP	MED12	ENST00000333646	human	ensembl	74_37	+1	known	silent	c.6204	p.Q2068	1.000	NULL	pfam_Mediator_Med12_LCEWAV,pfam_Mediator_Med12_catenin-bd,pfam_Mediator_Med12	-	no_errors	MED12	HGNC	ENSG00000184634				18	0	0	23	3	11.5385
MED12	0	genome.wustl.edu	37	X	70360647	70360647	+	Silent	SNP	A	A	G			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	X	70360647	70360647	A	G	SNP	MED12	ENST00000333646	human	ensembl	74_37	+1	known	silent	c.6216	p.Q2072	0.341	NULL	pfam_Mediator_Med12_LCEWAV,pfam_Mediator_Med12_catenin-bd,pfam_Mediator_Med12	-	no_errors	MED12	HGNC	ENSG00000184634				17	0	0	21	3	12.5
RPS6KA6	0	genome.wustl.edu	37	X	83403075	83403075	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	X	83403075	83403075	C	A	SNP	RPS6KA6	ENST00000262752	human	ensembl	74_37	-1	known	missense	c.315	p.K105N	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_dom	-	no_errors	RPS6KA6	HGNC	ENSG00000072133				23	0	0	5	8	61.5385
PCDH11X	0	genome.wustl.edu	37	X	91133952	91133952	+	Silent	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	X	91133952	91133952	C	T	SNP	PCDH11X	ENST00000373094	human	ensembl	74_37	+1	known	silent	c.2713	p.L905	0.984	pfam_Protocadherin	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH11X	HGNC	ENSG00000102290				71	0	0	64	5	7.24638
PCDH11X	0	genome.wustl.edu	37	X	91873424	91873424	+	Silent	SNP	C	C	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	X	91873424	91873424	C	T	SNP	PCDH11X	ENST00000373094	human	ensembl	74_37	+1	known	silent	c.3529	p.L1177	0.000	NULL	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH11X	HGNC	ENSG00000102290				74	0	0	40	34	45.9459
USP9Y	0	genome.wustl.edu	37	Y	14951943	14951943	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	Y	14951943	14951943	G	A	SNP	USP9Y	ENST00000338981	human	ensembl	74_37	+1	known	missense	c.5491	p.V1831I	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,superfamily_ARM-type_fold,superfamily_Glycoside_hydrolase_SF,pfscan_Peptidase_C19/C67	-	no_errors	USP9Y	HGNC	ENSG00000114374				65	0	0	15	37	71.1538
ENSG00000269175	0	genome.wustl.edu	37	1	101456192	101456193	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	101456192	101456193	-	A	INS	ENSG00000269175	ENST00000593496	human	ensembl	74_37	+1	known	frame_shift_ins	c.186_187	p.R65fs	0.576:0.002	NULL	NULL	-	no_errors	AC093157.1	Clone_based_ensembl_gene	ENSG00000269175				30	0	0	25	3	10.7143
GPR61	0	genome.wustl.edu	37	1	110086456	110086456	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	110086456	110086456	C	-	DEL	GPR61	ENST00000404129	human	ensembl	74_37	+1	known	frame_shift_del	c.812	p.Q273fs	0.998	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	GPR61	HGNC	ENSG00000156097				66	0	0	53	14	20.8955
OVGP1	0	genome.wustl.edu	37	1	111959067	111959068	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	111959067	111959068	-	T	INS	OVGP1	ENST00000369732	human	ensembl	74_37	-1	known	frame_shift_ins	c.1034_1033	p.R345fs	0.069:0.157	pfam_Glyco_hydro18cat,superfamily_Glycoside_hydrolase_SF,smart_Chitinase_II	pfam_Glyco_hydro18cat,superfamily_Glycoside_hydrolase_SF,smart_Chitinase_II	-	no_errors	OVGP1	HGNC	ENSG00000085465				141	0	0	127	29	18.5897
PHTF1	0	genome.wustl.edu	37	1	114280758	114280761	+	Frame_Shift_Del	DEL	CAAA	CAAA	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	CAAA	CAAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	114280758	114280761	CAAA	-	DEL	PHTF1	ENST00000369604	human	ensembl	74_37	-1	known	frame_shift_del	c.305_302	p.V101fs	1.000:1.000:0.996:1.000	pfam_TF_homeodomain_male	pfam_TF_homeodomain_male	-	no_errors	PHTF1	HGNC	ENSG00000116793				56	0	0	33	6	15.3846
SPAG17	0	genome.wustl.edu	37	1	118514590	118514590	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	118514590	118514590	A	-	DEL	SPAG17	ENST00000336338	human	ensembl	74_37	-1	known	frame_shift_del	c.6222	p.F2074fs	0.223	NULL	NULL	-	no_errors	SPAG17	HGNC	ENSG00000155761				80	0	0	48	14	22.5806
AADACL3	0	genome.wustl.edu	37	1	12785494	12785494	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	12785494	12785494	G	-	DEL	AADACL3	ENST00000359318	human	ensembl	74_37	+1	known	frame_shift_del	c.584	p.C195fs	0.040	NULL	pfam_AB_hydrolase_3	-	no_errors	AADACL3	HGNC	ENSG00000188984				217	0	0	146	30	17.0455
SEMA6C	0	genome.wustl.edu	37	1	151110223	151110225	+	In_Frame_Del	DEL	GAA	GAA	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	GAA	GAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	151110223	151110225	GAA	-	DEL	SEMA6C	ENST00000368913	human	ensembl	74_37	-1	known	in_frame_del	c.720_718	p.F240in_frame_del	1.000:1.000:1.000	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,pfscan_Semap_dom	-	no_errors	SEMA6C	HGNC	ENSG00000143434				148	0	0	113	14	11.0236
TDRD10	0	genome.wustl.edu	37	1	154493908	154493908	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	154493908	154493908	C	-	DEL	TDRD10	ENST00000368480	human	ensembl	74_37	+1	known	frame_shift_del	c.322	p.K110fs	0.000	NULL	pfam_Tudor,pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	TDRD10	HGNC	ENSG00000163239				287	1	0.347222	215	41	16.0156
KCNN3	0	genome.wustl.edu	37	1	154842106	154842106	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	154842106	154842106	G	-	DEL	KCNN3	ENST00000271915	human	ensembl	74_37	-1	novel	frame_shift_del	c.335	p.P112fs	0.918	NULL	pfam_K_chnl_Ca-activ_SK,pfam_CaM-bd_dom,pfam_2pore_dom_K_chnl_dom,superfamily_CaM-bd_dom,prints_K_chnl_Ca-activ_SK	-	no_errors	KCNN3	HGNC	ENSG00000143603				44	0	0	16	6	27.2727
LAMTOR2	0	genome.wustl.edu	37	1	156028246	156028246	+	RNA	DEL	G	G	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	156028246	156028246	G	-	DEL	LAMTOR2	ENST00000463371	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	LAMTOR2	HGNC	ENSG00000116586				10	0	0	8	6	42.8571
LOC100131825	0	genome.wustl.edu	37	1	159166613	159166613	+	RNA	DEL	T	T	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	159166613	159166613	T	-	DEL	LOC100131825	ENST00000415675	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CTA-134P22.2	Clone_based_vega_gene	ENSG00000225670				22	0	0	8	3	27.2727
KCNJ10	0	genome.wustl.edu	37	1	160012018	160012018	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	160012018	160012018	G	-	DEL	KCNJ10	ENST00000368089	human	ensembl	74_37	-1	known	frame_shift_del	c.305	p.P102fs	0.995	pfam_K_chnl_inward-rec_Kir,pirsf_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir1.2,prints_K_chnl_inward-rec_Kir1.1	-	no_errors	KCNJ10	HGNC	ENSG00000177807				94	0	0	87	5	5.43478
PLEKHM2	0	genome.wustl.edu	37	1	16011068	16011070	+	In_Frame_Del	DEL	GGT	GGT	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	GGT	GGT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	16011068	16011070	GGT	-	DEL	PLEKHM2	ENST00000375799	human	ensembl	74_37	+1	known	in_frame_del	c.15_17	p.V6in_frame_del	1.000:1.000:1.000	NULL	pfam_Run,pfam_Pleckstrin_homology,smart_Run,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Run	-	no_errors	PLEKHM2	HGNC	ENSG00000116786				26	0	0	15	3	16.6667
ARHGAP30	0	genome.wustl.edu	37	1	161021106	161021106	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	161021106	161021106	G	-	DEL	ARHGAP30	ENST00000368013	human	ensembl	74_37	-1	known	frame_shift_del	c.1418	p.P473fs	1.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP30	HGNC	ENSG00000186517				41	0	0	48	8	14.2857
DEDD	0	genome.wustl.edu	37	1	161091815	161091817	+	RNA	DEL	AAA	AAA	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	AAA	AAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	161091815	161091817	AAA	-	DEL	DEDD	ENST00000486041	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000:1.000:1.000	-	-	-	no_errors	DEDD	HGNC	ENSG00000158796				18	0	0	6	6	50
DDX59	0	genome.wustl.edu	37	1	200594042	200594042	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	200594042	200594042	T	-	DEL	DDX59	ENST00000447706	human	ensembl	74_37	-1	known	frame_shift_del	c.1730	p.N577fs	0.001	pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Znf_HIT,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX59	HGNC	ENSG00000118197				57	0	0	48	6	11.1111
USP48	0	genome.wustl.edu	37	1	22033386	22033387	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	22033386	22033387	AA	-	DEL	USP48	ENST00000529637	human	ensembl	74_37	-1	novel	frame_shift_del	c.1975_1974	p.S659fs	0.000:0.000	NULL	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67,pfscan_Ubiquitin_supergroup	-	no_errors	USP48	HGNC	ENSG00000090686				29	0	0	15	4	21.0526
TCEB3	0	genome.wustl.edu	37	1	24078404	24078404	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	24078404	24078404	A	-	DEL	TCEB3	ENST00000418390	human	ensembl	74_37	+1	known	frame_shift_del	c.1387	p.N465fs	0.998	NULL	pfam_RNA_pol_II_trans_fac_SIII_A,pfam_TFIIS_N,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub,pfscan_F-box_dom	-	no_errors	TCEB3	HGNC	ENSG00000011007				116	1	0.854701	74	27	26.7327
OR14C36	0	genome.wustl.edu	37	1	248512384	248512384	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	248512384	248512384	T	-	DEL	OR14C36	ENST00000317861	human	ensembl	74_37	+1	known	frame_shift_del	c.308	p.F105fs	0.004	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR14C36	HGNC	ENSG00000177174				34	0	0	28	5	15.1515
WDTC1	0	genome.wustl.edu	37	1	27621108	27621108	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	27621108	27621108	G	-	DEL	WDTC1	ENST00000319394	human	ensembl	74_37	+1	known	frame_shift_del	c.861	p.E290fs	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,smart_TPR_repeat,pfscan_TPR-contain_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDTC1	HGNC	ENSG00000142784				57	0	0	45	11	19.6429
RAB42	0	genome.wustl.edu	37	1	28920547	28920547	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	28920547	28920547	G	-	DEL	RAB42	ENST00000373826	human	ensembl	74_37	+1	known	frame_shift_del	c.236	p.G81fs	1.000	superfamily_P-loop_NTPase	pfam_Small_GTPase,superfamily_P-loop_NTPase,smart_Small_GTPase_Rab_type,prints_Small_GTPase	-	no_errors	RAB42	HGNC	ENSG00000188060				54	0	0	42	11	20.7547
ENSG00000271554	0	genome.wustl.edu	37	1	36475027	36475027	+	RNA	DEL	A	A	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	36475027	36475027	A	-	DEL	ENSG00000271554	ENST00000479395	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.011	-	-	-	no_errors	RP4-665N4.8	Clone_based_vega_gene	ENSG00000271554				21	0	0	23	6	20.6897
SMAP2	0	genome.wustl.edu	37	1	40878733	40878734	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	40878733	40878734	-	A	INS	SMAP2	ENST00000372718	human	ensembl	74_37	+1	known	frame_shift_ins	c.448_449	p.L153fs	1.000:1.000	NULL	pfam_ArfGAP,smart_ArfGAP,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	SMAP2	HGNC	ENSG00000084070				60	0	0	36	12	25
CLDN19	0	genome.wustl.edu	37	1	43200768	43200768	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	43200768	43200768	G	-	DEL	CLDN19	ENST00000296387	human	ensembl	74_37	-1	known	frame_shift_del	c.664	p.L222fs	1.000	NULL	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin	-	no_errors	CLDN19	HGNC	ENSG00000164007				46	0	0	30	7	18.9189
TESK2	0	genome.wustl.edu	37	1	45812430	45812432	+	In_Frame_Del	DEL	CAT	CAT	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	CAT	CAT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	45812430	45812432	CAT	-	DEL	TESK2	ENST00000372086	human	ensembl	74_37	-1	known	in_frame_del	c.814_812	p.D271in_frame_del	1.000:0.999:1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	TESK2	HGNC	ENSG00000070759				42	0	0	34	9	20.9302
CYP4X1	0	genome.wustl.edu	37	1	47489498	47489500	+	In_Frame_Del	DEL	CTC	CTC	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	47489498	47489500	CTC	-	DEL	CYP4X1	ENST00000371901	human	ensembl	74_37	+1	known	in_frame_del	c.9_11	p.S4in_frame_del	0.054:0.964:0.988	NULL	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II	-	no_errors	CYP4X1	HGNC	ENSG00000186377				66	0	0	44	9	16.9811
DOCK7	0	genome.wustl.edu	37	1	62941104	62941105	+	RNA	DEL	AA	AA	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	62941104	62941105	AA	-	DEL	DOCK7	ENST00000467758	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.057:0.079	-	-	-	no_errors	DOCK7	HGNC	ENSG00000116641				15	0	0	4	3	42.8571
ENSG00000252404	0	genome.wustl.edu	37	1	9142938	9142940	+	RNA	DEL	ACA	ACA	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	ACA	ACA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	1	9142938	9142940	ACA	-	DEL	ENSG00000252404	ENST00000516595	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.023:0.021:0.026	-	-	-	no_errors	SCARNA16	RFAM	ENSG00000252404				22	0	0	10	2	16.6667
NOLC1	0	genome.wustl.edu	37	10	103919299	103919299	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	10	103919299	103919299	A	-	DEL	NOLC1	ENST00000405356	human	ensembl	74_37	+1	known	frame_shift_del	c.863	p.K290fs	0.998	NULL	pfam_SRP40_C,pfscan_LisH_dimerisation	-	no_errors	NOLC1	HGNC	ENSG00000166197				50	0	0	33	5	13.1579
PSD	0	genome.wustl.edu	37	10	104176197	104176197	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	10	104176197	104176197	G	-	DEL	PSD	ENST00000020673	human	ensembl	74_37	-1	known	frame_shift_del	c.599	p.P200fs	0.881	NULL	pfam_Sec7_dom,pfam_Pleckstrin_homology,superfamily_Sec7_dom,smart_Sec7_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Sec7_dom,prints_PH_dom-spectrin-type	-	no_errors	PSD	HGNC	ENSG00000059915				24	0	0	10	2	16.6667
OAT	0	genome.wustl.edu	37	10	126091634	126091634	+	RNA	DEL	A	A	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	10	126091634	126091634	A	-	DEL	OAT	ENST00000471127	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	OAT	HGNC	ENSG00000065154				171	1	0.581395	63	21	25
FAM196A	0	genome.wustl.edu	37	10	128974289	128974289	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	10	128974289	128974289	T	-	DEL	FAM196A	ENST00000522781	human	ensembl	74_37	-1	known	frame_shift_del	c.371	p.K124fs	0.991	NULL	NULL	-	no_errors	FAM196A	HGNC	ENSG00000188916				57	0	0	30	8	21.0526
ENSG00000235939	0	genome.wustl.edu	37	10	50680934	50680934	+	RNA	DEL	A	A	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	10	50680934	50680934	A	-	DEL	ENSG00000235939	ENST00000423283	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-123B3.2	Clone_based_vega_gene	ENSG00000235939				28	0	0	16	7	30.4348
NCOA4	0	genome.wustl.edu	37	10	51581288	51581289	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	10	51581288	51581289	-	A	INS	NCOA4	ENST00000452682	human	ensembl	74_37	+1	known	frame_shift_ins	c.438_439	p.P147fs	0.986:1.000	pfam_ARA70	pfam_ARA70	-	no_errors	NCOA4	HGNC	ENSG00000138293				121	0	0	76	22	22.449
DDX50	0	genome.wustl.edu	37	10	70673882	70673882	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	10	70673882	70673882	A	-	DEL	DDX50	ENST00000373585	human	ensembl	74_37	+1	known	frame_shift_del	c.1011	p.K339fs	1.000	superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_GUCT,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX50	HGNC	ENSG00000107625				51	0	0	29	15	34.0909
KIAA1279	0	genome.wustl.edu	37	10	70775814	70775815	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	10	70775814	70775815	-	A	INS	KIAA1279	ENST00000361983	human	ensembl	74_37	+1	known	frame_shift_ins	c.1508_1509	p.I506fs	0.805:0.024	pfam_KBP	pfam_KBP	-	no_errors	KIAA1279	HGNC	ENSG00000198954				41	0	0	42	10	19.2308
C10orf54	0	genome.wustl.edu	37	10	73511467	73511467	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	10	73511467	73511467	G	-	DEL	C10orf54	ENST00000394957	human	ensembl	74_37	-1	known	frame_shift_del	c.856	p.L286fs	0.979	NULL	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	C10orf54	HGNC	ENSG00000107738				42	0	0	25	8	24.2424
ZSWIM8	0	genome.wustl.edu	37	10	75560546	75560546	+	RNA	DEL	C	C	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	10	75560546	75560546	C	-	DEL	ZSWIM8	ENST00000603195	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.749	-	-	-	no_errors	ZSWIM8	HGNC	ENSG00000214655				26	0	0	19	5	20.8333
ATP5C1	0	genome.wustl.edu	37	10	7849654	7849654	+	RNA	DEL	T	T	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	10	7849654	7849654	T	-	DEL	ATP5C1	ENST00000465936	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.586	-	-	-	no_errors	ATP5C1	HGNC	ENSG00000165629				117	0	0	60	14	18.9189
IDE	0	genome.wustl.edu	37	10	94243044	94243045	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	10	94243044	94243045	-	A	INS	IDE	ENST00000265986	human	ensembl	74_37	-1	known	frame_shift_ins	c.1707_1706	p.L569fs	1.000:1.000	superfamily_Metalloenz_LuxS/M16	pfam_Pept_M16_N,pfam_Peptidase_M16_C,superfamily_Metalloenz_LuxS/M16	-	no_errors	IDE	HGNC	ENSG00000119912				50	0	0	16	3	15.7895
ZNF518A	0	genome.wustl.edu	37	10	97918856	97918856	+	RNA	DEL	A	A	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	10	97918856	97918856	A	-	DEL	ZNF518A	ENST00000316045	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.867	-	-	-	no_errors	ZNF518A	HGNC	ENSG00000177853				30	0	0	10	9	47.3684
REXO2	0	genome.wustl.edu	37	11	114320750	114320750	+	RNA	DEL	T	T	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	11	114320750	114320750	T	-	DEL	REXO2	ENST00000544507	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	REXO2	HGNC	ENSG00000076043				74	0	0	48	13	21.3115
HYOU1	0	genome.wustl.edu	37	11	118918525	118918526	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	11	118918525	118918526	-	C	INS	HYOU1	ENST00000404233	human	ensembl	74_37	-1	known	frame_shift_ins	c.2516_2515	p.A839fs	1.000:1.000	NULL	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HYOU1	HGNC	ENSG00000149428				77	0	0	46	14	23.3333
DPAGT1	0	genome.wustl.edu	37	11	118969143	118969143	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	11	118969143	118969143	A	-	DEL	DPAGT1	ENST00000354202	human	ensembl	74_37	-1	known	frame_shift_del	c.698	p.F233fs	1.000	pfam_Glycosyl_transferase_4	pfam_Glycosyl_transferase_4	-	no_errors	DPAGT1	HGNC	ENSG00000172269				108	0	0	122	29	19.2053
VWA5A	0	genome.wustl.edu	37	11	124005694	124005694	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	11	124005694	124005694	G	-	DEL	VWA5A	ENST00000392748	human	ensembl	74_37	+1	known	frame_shift_del	c.1312	p.G439fs	0.871	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VIT,pfam_VWF_A,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	VWA5A	HGNC	ENSG00000110002				100	0	0	75	15	16.6667
CCDC15	0	genome.wustl.edu	37	11	124845049	124845049	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	11	124845049	124845049	A	-	DEL	CCDC15	ENST00000344762	human	ensembl	74_37	+1	known	frame_shift_del	c.574	p.K194fs	0.000	NULL	NULL	-	no_errors	CCDC15	HGNC	ENSG00000149548				28	0	0	28	6	17.6471
PAX6	0	genome.wustl.edu	37	11	31812317	31812317	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	11	31812317	31812317	G	-	DEL	PAX6	ENST00000379107	human	ensembl	74_37	-1	known	frame_shift_del	c.1166	p.P389fs	1.000	NULL	pfam_Paired_dom,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Paired_dom,smart_Homeobox_dom,prints_Paired_dom,pfscan_Homeobox_dom,pfscan_Paired_dom	-	no_errors	PAX6	HGNC	ENSG00000007372				77	0	0	66	15	18.5185
APIP	0	genome.wustl.edu	37	11	34910341	34910341	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	11	34910341	34910341	T	-	DEL	APIP	ENST00000278359	human	ensembl	74_37	-1	known	frame_shift_del	c.334	p.S112fs	1.000	pfam_Aldolase_II/adducin_N,superfamily_Aldolase_II/adducin_N,tigrfam_MethylthioRu-1-P_deHdtase_MtnB	pfam_Aldolase_II/adducin_N,superfamily_Aldolase_II/adducin_N,tigrfam_MethylthioRu-1-P_deHdtase_MtnB	-	no_errors	APIP	HGNC	ENSG00000149089				79	0	0	47	7	12.963
OR51E2	0	genome.wustl.edu	37	11	4703475	4703475	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	11	4703475	4703475	A	-	DEL	OR51E2	ENST00000396950	human	ensembl	74_37	-1	known	frame_shift_del	c.467	p.F156fs	0.027	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR51E2	HGNC	ENSG00000167332				71	0	0	74	8	9.7561
TRIM51	0	genome.wustl.edu	37	11	55653610	55653610	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	11	55653610	55653610	A	-	DEL	TRIM51	ENST00000449290	human	ensembl	74_37	+1	known	frame_shift_del	c.423	p.M144fs	0.001	NULL	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM51	HGNC	ENSG00000124900				47	0	0	19	8	29.6296
OR5B21	0	genome.wustl.edu	37	11	58275490	58275490	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	11	58275490	58275490	A	-	DEL	OR5B21	ENST00000360374	human	ensembl	74_37	-1	known	frame_shift_del	c.89	p.L30fs	0.001	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5B21	HGNC	ENSG00000198283				163	0	0	120	30	20
PITPNM1	0	genome.wustl.edu	37	11	67267649	67267649	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	11	67267649	67267649	G	-	DEL	PITPNM1	ENST00000356404	human	ensembl	74_37	-1	known	frame_shift_del	c.884	p.P295fs	0.012	NULL	pfam_PI_transfer,pfam_DDHD,pfam_LNS2,superfamily_HAD-like_dom,smart_LNS2,pfscan_DDHD,prints_PI_transfer	-	no_errors	PITPNM1	HGNC	ENSG00000110697				67	0	0	49	12	19.6721
OR2D3	0	genome.wustl.edu	37	11	6942990	6942991	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	11	6942990	6942991	-	T	INS	OR2D3	ENST00000317834	human	ensembl	74_37	+1	known	frame_shift_ins	c.758_759	p.S255fs	0.465:0.013	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2D3	HGNC	ENSG00000178358				54	0	0	24	11	31.4286
KRTAP5-8	0	genome.wustl.edu	37	11	71249165	71249165	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	11	71249165	71249165	G	-	DEL	KRTAP5-8	ENST00000398534	human	ensembl	74_37	+1	known	frame_shift_del	c.64	p.G23fs	0.980	NULL	NULL	-	no_errors	KRTAP5-8	HGNC	ENSG00000241233				186	0	0	156	17	9.82659
SYTL2	0	genome.wustl.edu	37	11	85435356	85435356	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	11	85435356	85435356	G	-	DEL	SYTL2	ENST00000359152	human	ensembl	74_37	-1	known	frame_shift_del	c.3716	p.P1239fs	0.000	NULL	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	SYTL2	HGNC	ENSG00000137501				103	1	0.961538	91	7	7.14286
HEPHL1	0	genome.wustl.edu	37	11	93754625	93754626	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	11	93754625	93754626	-	T	INS	HEPHL1	ENST00000315765	human	ensembl	74_37	+1	known	frame_shift_ins	c.91_92	p.G32fs	0.997:0.999	superfamily_Cupredoxin	pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Cupredoxin	-	no_errors	HEPHL1	HGNC	ENSG00000181333				156	0	0	125	25	16.6667
ACACB	0	genome.wustl.edu	37	12	109671600	109671600	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	12	109671600	109671600	C	-	DEL	ACACB	ENST00000338432	human	ensembl	74_37	+1	known	frame_shift_del	c.4187	p.L1398fs	0.001	pfam_AcCoA_COase_cen	pfam_AcCoA_COase_cen,pfam_Carboxyl_trans,pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,superfamily_PreATP-grasp_dom,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_COA_CT_N,pfscan_COA_CT_C,pfscan_Biotin_lipoyl	-	no_errors	ACACB	HGNC	ENSG00000076555				152	0	0	108	7	6.08696
RNF10	0	genome.wustl.edu	37	12	121014514	121014514	+	RNA	DEL	T	T	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	12	121014514	121014514	T	-	DEL	RNF10	ENST00000535470	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.011	-	-	-	no_errors	RNF10	HGNC	ENSG00000022840				103	0	0	71	21	22.8261
ULK1	0	genome.wustl.edu	37	12	132401026	132401027	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	12	132401026	132401027	-	C	INS	ULK1	ENST00000321867	human	ensembl	74_37	+1	known	frame_shift_ins	c.1962_1963	p.R656fs	0.001:0.993	pirsf_Ser/Thr_kin_STPK_Ulk-1/2	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ser/Thr_kinase_C,pfam_LipoPS_kinase,pfam_RIO-like_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ser/Thr_kin_STPK_Ulk-1/2,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	ULK1	HGNC	ENSG00000177169				94	0	0	71	9	11.25
DCP1B	0	genome.wustl.edu	37	12	2062122	2062122	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	12	2062122	2062122	A	-	DEL	DCP1B	ENST00000280665	human	ensembl	74_37	-1	known	frame_shift_del	c.984	p.F328fs	0.000	NULL	pfam_DCP1	-	no_errors	DCP1B	HGNC	ENSG00000151065				77	0	0	62	22	26.1905
ST8SIA1	0	genome.wustl.edu	37	12	22486986	22486986	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	12	22486986	22486986	C	-	DEL	ST8SIA1	ENST00000396037	human	ensembl	74_37	-1	known	frame_shift_del	c.181	p.V61fs	1.000	pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST8SIA1	HGNC	ENSG00000111728				117	0	0	108	29	21.1679
ABCD2	0	genome.wustl.edu	37	12	39997743	39997745	+	In_Frame_Del	DEL	CTC	CTC	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	12	39997743	39997745	CTC	-	DEL	ABCD2	ENST00000308666	human	ensembl	74_37	-1	known	in_frame_del	c.1471_1469	p.G490in_frame_del	1.000:1.000:1.000	superfamily_P-loop_NTPase,pfscan_ABC_transporter-like	pfam_ABC_Peroxi_TM,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCD2	HGNC	ENSG00000173208				153	0	0	61	23	27.381
LRP1	0	genome.wustl.edu	37	12	57572242	57572242	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	12	57572242	57572242	G	-	DEL	LRP1	ENST00000243077	human	ensembl	74_37	+1	known	frame_shift_del	c.4462	p.E1490fs	1.000	smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1	HGNC	ENSG00000123384				126	0	0	116	33	22.1477
XPOT	0	genome.wustl.edu	37	12	64812755	64812755	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	12	64812755	64812755	T	-	DEL	XPOT	ENST00000332707	human	ensembl	74_37	+1	known	frame_shift_del	c.370	p.F126fs	1.000	pfam_Exportin-1/Importin-b-like,superfamily_ARM-type_fold	pfam_Exportin-1/Importin-b-like,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N	-	no_errors	XPOT	HGNC	ENSG00000184575				103	1	0.961538	41	27	39.7059
GPR162	0	genome.wustl.edu	37	12	6936082	6936082	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	12	6936082	6936082	C	-	DEL	GPR162	ENST00000311268	human	ensembl	74_37	+1	known	frame_shift_del	c.1480	p.P495fs	0.999	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPR162,prints_GCR_153/162	-	no_errors	GPR162	HGNC	ENSG00000250510				139	0	0	70	26	27.0833
VEZT	0	genome.wustl.edu	37	12	95650969	95650969	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	12	95650969	95650969	T	-	DEL	VEZT	ENST00000436874	human	ensembl	74_37	+1	known	frame_shift_del	c.212	p.S74fs	0.065	NULL	NULL	-	no_errors	VEZT	HGNC	ENSG00000028203				21	0	0	23	6	20.6897
TMPO	0	genome.wustl.edu	37	12	98941485	98941486	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	12	98941485	98941486	-	A	INS	TMPO	ENST00000556029	human	ensembl	74_37	+1	known	frame_shift_ins	c.1214_1215	p.G409fs	0.990:0.976	NULL	pfam_LEM-like_dom,pfam_LEM_dom,superfamily_LEM/LEM-like_dom,smart_LEM_dom,pfscan_LEM_dom,pfscan_LEM-like_dom	-	no_errors	TMPO	HGNC	ENSG00000120802				60	0	0	51	6	10.5263
CLYBL	0	genome.wustl.edu	37	13	100543659	100543660	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	13	100543659	100543660	-	A	INS	CLYBL	ENST00000339105	human	ensembl	74_37	+1	known	frame_shift_ins	c.1015_1016	p.*341fs	1.000:1.000	NULL	pfam_Aldehyde-lyase_domain,superfamily_Pyrv/PenolPyrv_Kinase-like_dom,pirsf_Citrate_lyase_beta	-	no_errors	CLYBL	HGNC	ENSG00000125246				78	0	0	47	19	28.7879
COL4A2	0	genome.wustl.edu	37	13	111114439	111114439	+	RNA	DEL	T	T	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	13	111114439	111114439	T	-	DEL	COL4A2	ENST00000478681	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	COL4A2	HGNC	ENSG00000134871				29	0	0	29	11	27.5
PSPC1	0	genome.wustl.edu	37	13	20277345	20277346	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	13	20277345	20277346	AA	-	DEL	PSPC1	ENST00000338910	human	ensembl	74_37	-1	known	frame_shift_del	c.1542_1541	p.F514fs	1.000:1.000	NULL	pfam_RRM_dom,pfam_NOPS,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	PSPC1	HGNC	ENSG00000121390				161	0	0	104	17	14.0496
KLF5	0	genome.wustl.edu	37	13	73636730	73636730	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	13	73636730	73636730	A	-	DEL	KLF5	ENST00000377687	human	ensembl	74_37	+1	known	frame_shift_del	c.993	p.I332fs	0.238	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	KLF5	HGNC	ENSG00000102554				200	0	0	127	48	27.4286
PCK2	0	genome.wustl.edu	37	14	24567477	24567479	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	14	24567477	24567479	CTT	-	DEL	PCK2	ENST00000216780	human	ensembl	74_37	+1	known	in_frame_del	c.341_343	p.S115in_frame_del	0.997:1.000:1.000	pfam_PEP_carboxykinase_GTP,superfamily_PEP_carboxykinase_N,pirsf_PEP_carboxykinase_GTP	pfam_PEP_carboxykinase_GTP,superfamily_PEP_carboxykinase_N,pirsf_PEP_carboxykinase_GTP	-	no_errors	PCK2	HGNC	ENSG00000100889				53	0	0	55	22	28.5714
DAAM1	0	genome.wustl.edu	37	14	59835592	59835592	+	RNA	DEL	T	T	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	14	59835592	59835592	T	-	DEL	DAAM1	ENST00000553966	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.059	-	-	-	no_errors	DAAM1	HGNC	ENSG00000100592				19	0	0	21	4	16
RBM25	0	genome.wustl.edu	37	14	73572607	73572608	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	14	73572607	73572608	AG	-	DEL	RBM25	ENST00000261973	human	ensembl	74_37	+1	known	frame_shift_del	c.1195_1196	p.E402fs	0.998:1.000	NULL	pfam_PWI_dom,pfam_RRM_dom,superfamily_PWI_dom,smart_RRM_dom,smart_PWI_dom,pfscan_RRM_dom	-	no_errors	RBM25	HGNC	ENSG00000119707				18	0	0	6	2	25
LTBP2	0	genome.wustl.edu	37	14	75016599	75016599	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	14	75016599	75016599	C	-	DEL	LTBP2	ENST00000261978	human	ensembl	74_37	-1	known	frame_shift_del	c.1756	p.V586fs	0.339	pfam_TB_dom,superfamily_TB_dom	pfam_EGF-like_Ca-bd_dom,pfam_TB_dom,pfam_EG-like_dom,superfamily_TB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	LTBP2	HGNC	ENSG00000119681				177	0	0	157	28	15.1351
OCA2	0	genome.wustl.edu	37	15	28200305	28200305	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	15	28200305	28200305	T	-	DEL	OCA2	ENST00000354638	human	ensembl	74_37	-1	known	frame_shift_del	c.1841	p.K614fs	1.000	pfam_Cit_transptr-like_dom,pfam_Arsenical_pump_ArsB,tigrfam_Arsenical_pump_ArsB	pfam_Cit_transptr-like_dom,pfam_Na/sul_symport,pfam_Arsenical_pump_ArsB,tigrfam_Arsenical_pump_ArsB	-	no_errors	OCA2	HGNC	ENSG00000104044				139	1	0.714286	96	7	6.79612
TJP1	0	genome.wustl.edu	37	15	30065503	30065504	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	15	30065503	30065504	-	A	INS	TJP1	ENST00000346128	human	ensembl	74_37	-1	known	frame_shift_ins	c.142_141	p.Q47fs	1.000:1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,pfam_ZU5,pfam_GK/Ca_channel_bsu,pfam_SH3_2,superfamily_PDZ,superfamily_P-loop_NTPase,superfamily_SH3_domain,smart_PDZ,smart_GK/Ca_channel_bsu,smart_ZU5,pfscan_PDZ,pfscan_SH3_domain,pfscan_ZU5,pfscan_Guanylate_kin-like,prints_ZonOcculS1,prints_ZonOcculdens	-	no_errors	TJP1	HGNC	ENSG00000104067				131	0	0	102	20	16.3934
PLA2G4E	0	genome.wustl.edu	37	15	42302330	42302331	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	15	42302330	42302331	-	C	INS	PLA2G4E	ENST00000413860	human	ensembl	74_37	-1	known	frame_shift_ins	c.116_115	p.A39fs	0.000:0.000	pfscan_C2_dom	pfam_LysoPLipase_cat_dom,pfam_C2_dom,superfamily_Acyl_Trfase/lysoPLipase,superfamily_C2_dom,smart_C2_dom,smart_LysoPLipase_cat_dom,pfscan_C2_dom,pfscan_LysoPLipase_cat_dom	-	no_errors	PLA2G4E	HGNC	ENSG00000188089				88	0	0	59	13	18.0556
TRPM7	0	genome.wustl.edu	37	15	50931657	50931658	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	15	50931657	50931658	-	C	INS	TRPM7	ENST00000313478	human	ensembl	74_37	-1	known	frame_shift_ins	c.624_623	p.V209fs	1.000:1.000	NULL	pfam_MHCK_EF2_kinase,pfam_Ion_trans_dom,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	TRPM7	HGNC	ENSG00000092439				112	0	0	66	29	30.5263
SCAPER	0	genome.wustl.edu	37	15	77064150	77064150	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	15	77064150	77064150	T	-	DEL	SCAPER	ENST00000324767	human	ensembl	74_37	-1	known	frame_shift_del	c.1181	p.N394fs	0.000	NULL	smart_Znf_U1	-	no_errors	SCAPER	HGNC	ENSG00000140386				168	0	0	122	25	17.0068
C15orf40	0	genome.wustl.edu	37	15	83674353	83674354	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	15	83674353	83674354	-	T	INS	C15orf40	ENST00000513601	human	ensembl	74_37	-1	known	frame_shift_ins	c.458_457	p.T153fs	0.010:0.000	NULL	pfam_DUF167,superfamily_DUF167	-	no_errors	C15orf40	HGNC	ENSG00000169609				93	0	0	58	20	25.641
AKAP13	0	genome.wustl.edu	37	15	86278855	86278855	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	15	86278855	86278855	A	-	DEL	AKAP13	ENST00000361243	human	ensembl	74_37	+1	known	frame_shift_del	c.7518	p.K2508fs	0.998	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_Ankyrin_rpt-contain_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain	-	no_errors	AKAP13	HGNC	ENSG00000170776				77	0	0	47	18	27.6923
SLCO3A1	0	genome.wustl.edu	37	15	92706441	92706441	+	RNA	DEL	A	A	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	15	92706441	92706441	A	-	DEL	SLCO3A1	ENST00000555549	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.813	-	-	-	no_errors	SLCO3A1	HGNC	ENSG00000176463				24	0	0	13	8	38.0952
ZC3H7A	0	genome.wustl.edu	37	16	11846657	11846657	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	16	11846657	11846657	T	-	DEL	ZC3H7A	ENST00000355758	human	ensembl	74_37	-1	known	frame_shift_del	c.2594	p.N865fs	1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H7A	HGNC	ENSG00000122299				129	0	0	88	23	20.7207
SNX29	0	genome.wustl.edu	37	16	12492337	12492338	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	16	12492337	12492338	AG	-	DEL	SNX29	ENST00000306030	human	ensembl	74_37	+1	known	frame_shift_del	c.779_780	p.S261fs	1.000:1.000	NULL	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	SNX29	HGNC	ENSG00000048471				154	0	0	86	23	21.1009
NOMO1	0	genome.wustl.edu	37	16	14989451	14989451	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	16	14989451	14989451	C	-	DEL	NOMO1	ENST00000287667	human	ensembl	74_37	+1	known	frame_shift_del	c.3618	p.P1207fs	0.998	NULL	pfam_DUF2012,superfamily_CarboxyPept-like_regulatory,superfamily_Carb-bd-like_fold,superfamily_Collagen-bd_Cna_B-typ_dom	-	no_errors	NOMO1	HGNC	ENSG00000103512				686	0	0	610	73	10.6881
TMC5	0	genome.wustl.edu	37	16	19455473	19455474	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	16	19455473	19455474	-	G	INS	TMC5	ENST00000396229	human	ensembl	74_37	+1	known	frame_shift_ins	c.859_860	p.E289fs	0.000:0.000	NULL	pfam_TMC	-	no_errors	TMC5	HGNC	ENSG00000103534				123	0	0	109	28	20.438
ENSG00000261312	0	genome.wustl.edu	37	16	19718153	19718153	+	RNA	DEL	A	A	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	16	19718153	19718153	A	-	DEL	ENSG00000261312	ENST00000565916	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.126	-	-	-	no_errors	AC002550.5	Clone_based_vega_gene	ENSG00000261312				83	0	0	63	16	20.2532
SNORA64	0	genome.wustl.edu	37	16	2013100	2013101	+	RNA	DEL	GA	GA	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	GA	GA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	16	2013100	2013101	GA	-	DEL	SNORA64	ENST00000384674	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002:0.000	-	-	-	no_errors	SNORA64	HGNC	ENSG00000207405				34	0	0	20	7	25.9259
IL21R	0	genome.wustl.edu	37	16	27460530	27460530	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	16	27460530	27460530	C	-	DEL	IL21R	ENST00000337929	human	ensembl	74_37	+1	known	frame_shift_del	c.1543	p.R517fs	0.552	NULL	superfamily_Fibronectin_type3	-	no_errors	IL21R	HGNC	ENSG00000103522				91	0	0	73	13	15.1163
GTF3C1	0	genome.wustl.edu	37	16	27489822	27489822	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	16	27489822	27489822	T	-	DEL	GTF3C1	ENST00000356183	human	ensembl	74_37	-1	known	frame_shift_del	c.4227	p.D1410fs	0.975	NULL	pfam_TFIIIC_Bblock-bd	-	no_errors	GTF3C1	HGNC	ENSG00000077235				121	0	0	96	7	6.79612
ATXN2L	0	genome.wustl.edu	37	16	28847356	28847356	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	16	28847356	28847356	C	-	DEL	ATXN2L	ENST00000395547	human	ensembl	74_37	+1	known	frame_shift_del	c.2998	p.Q1002fs	0.998	NULL	pfam_LsmAD_domain,pfam_Ataxin-2_C,superfamily_LSM_dom	-	no_errors	ATXN2L	HGNC	ENSG00000168488				99	0	0	87	23	20.9091
MAZ	0	genome.wustl.edu	37	16	29818054	29818054	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	16	29818054	29818054	C	-	DEL	MAZ	ENST00000219782	human	ensembl	74_37	+1	known	frame_shift_del	c.32	p.F14fs	0.006	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	MAZ	HGNC	ENSG00000103495				28	0	0	23	5	17.8571
GLYR1	0	genome.wustl.edu	37	16	4862228	4862229	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	16	4862228	4862229	-	C	INS	GLYR1	ENST00000321919	human	ensembl	74_37	-1	known	frame_shift_ins	c.1141_1140	p.R380fs	0.990:0.170	pfam_6PGDH_NADP-bd	pfam_6PGDH_NADP-bd,pfam_PWWP_dom,superfamily_6-PGluconate_DH_C-like,smart_PWWP_dom,pfscan_PWWP_dom	-	no_errors	GLYR1	HGNC	ENSG00000140632				56	0	0	32	6	15.7895
CHTF18	0	genome.wustl.edu	37	16	842546	842546	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	16	842546	842546	G	-	DEL	CHTF18	ENST00000317063	human	ensembl	74_37	+1	known	frame_shift_del	c.2019	p.L676fs	0.441	superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	CHTF18	HGNC	ENSG00000127586				35	0	0	28	6	17.6471
ZC3H18	0	genome.wustl.edu	37	16	88691141	88691141	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	16	88691141	88691141	C	-	DEL	ZC3H18	ENST00000301011	human	ensembl	74_37	+1	known	frame_shift_del	c.2030	p.R680fs	0.568	NULL	smart_Znf_CCCH	-	no_errors	ZC3H18	HGNC	ENSG00000158545				34	0	0	27	8	22.8571
CRK	0	genome.wustl.edu	37	17	1326755	1326756	+	RNA	DEL	AA	AA	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	17	1326755	1326756	AA	-	DEL	CRK	ENST00000572145	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.352:0.023	-	-	-	no_errors	CRK	HGNC	ENSG00000167193				43	0	0	23	19	45.2381
UBBP4	0	genome.wustl.edu	37	17	21731489	21731489	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	17	21731489	21731489	C	-	DEL	UBBP4	ENST00000578713	human	ensembl	74_37	+1	putative	frame_shift_del	c.564	p.D191fs	1.000	pfam_Ubiquitin_dom,pfam_Rad60/SUMO_like,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup	pfam_Ubiquitin_dom,pfam_Rad60/SUMO_like,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup,prints_Ubiquitin	-	no_errors	UBBP4	HGNC	ENSG00000263563				55	0	0	31	9	22.5
KIAA0100	0	genome.wustl.edu	37	17	26971123	26971123	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	17	26971123	26971123	A	-	DEL	KIAA0100	ENST00000528896	human	ensembl	74_37	-1	known	frame_shift_del	c.151	p.W51fs	1.000	pfam_FMP27_N	pfam_FMP27_C,pfam_FMP27_N,pfam_FMP27_GFWDK_dom	-	no_errors	KIAA0100	HGNC	ENSG00000007202				124	0	0	91	27	22.8814
CCDC103	0	genome.wustl.edu	37	17	42980014	42980015	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	17	42980014	42980015	AG	-	DEL	CCDC103	ENST00000410006	human	ensembl	74_37	+1	known	frame_shift_del	c.558_559	p.S190fs	0.000:0.999	NULL	NULL	-	no_errors	CCDC103	HGNC	ENSG00000167131				48	0	0	40	9	18.3673
KANSL1	0	genome.wustl.edu	37	17	44248899	44248899	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	17	44248899	44248899	C	-	DEL	KANSL1	ENST00000262419	human	ensembl	74_37	-1	known	frame_shift_del	c.611	p.G204fs	1.000	NULL	NULL	-	no_errors	KANSL1	HGNC	ENSG00000120071				371	0	0	267	49	15.5063
FAM117A	0	genome.wustl.edu	37	17	47788753	47788754	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	17	47788753	47788754	-	G	INS	FAM117A	ENST00000240364	human	ensembl	74_37	-1	known	frame_shift_ins	c.1226_1225	p.L409fs	0.001:0.003	NULL	NULL	-	no_errors	FAM117A	HGNC	ENSG00000121104				54	0	0	26	5	16.129
RNF167	0	genome.wustl.edu	37	17	4844271	4844272	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	17	4844271	4844272	-	G	INS	RNF167	ENST00000262482	human	ensembl	74_37	+1	known	frame_shift_ins	c.67_68	p.L25fs	0.429:0.511	NULL	pfam_Protease-assoc_domain,pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF167	HGNC	ENSG00000108523				55	0	0	39	18	31.5789
PSMD12	0	genome.wustl.edu	37	17	65340757	65340757	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	17	65340757	65340757	T	-	DEL	PSMD12	ENST00000356126	human	ensembl	74_37	-1	known	frame_shift_del	c.1048	p.R350fs	0.987	pfam_PCI_dom,smart_PCI_dom	pfam_PCI_dom,smart_PCI_dom	-	no_errors	PSMD12	HGNC	ENSG00000197170				62	0	0	47	13	21.6667
ENSG00000272884	0	genome.wustl.edu	37	17	7344777	7344778	+	RNA	DEL	TC	TC	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	TC	TC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	17	7344777	7344778	TC	-	DEL	ENSG00000272884	ENST00000575331	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.982:0.987	-	-	-	no_errors	RP11-104H15.10	Clone_based_vega_gene	ENSG00000272884				46	0	0	17	14	45.1613
TMC8	0	genome.wustl.edu	37	17	76134523	76134524	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	17	76134523	76134524	-	T	INS	TMC8	ENST00000318430	human	ensembl	74_37	+1	known	frame_shift_ins	c.1627_1628	p.L544fs	0.979:0.951	NULL	pfam_TMC	-	no_errors	TMC8	HGNC	ENSG00000167895				129	0	0	103	30	22.5564
DTNA	0	genome.wustl.edu	37	18	32395860	32395860	+	RNA	DEL	T	T	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	18	32395860	32395860	T	-	DEL	DTNA	ENST00000592114	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.029	-	-	-	no_errors	DTNA	HGNC	ENSG00000134769				59	0	0	39	18	31.5789
SMAD7	0	genome.wustl.edu	37	18	46474794	46474795	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	18	46474794	46474795	-	G	INS	SMAD7	ENST00000262158	human	ensembl	74_37	-1	known	frame_shift_ins	c.627_626	p.P210fs	1.000:1.000	superfamily_SMAD_FHA_domain	pfam_SMAD_dom_Dwarfin-type,pfam_MAD_homology1_Dwarfin-type,superfamily_SMAD_FHA_domain,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,smart_SMAD_dom_Dwarfin-type,pfscan_MAD_homology_MH1,pfscan_SMAD_dom_Dwarfin-type	-	no_errors	SMAD7	HGNC	ENSG00000101665				65	0	0	45	8	15.0943
C19orf26	0	genome.wustl.edu	37	19	1231033	1231034	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	19	1231033	1231034	-	G	INS	C19orf26	ENST00000590083	human	ensembl	74_37	-1	known	frame_shift_ins	c.1221_1220	p.R408fs	0.000:0.001	NULL	NULL	-	no_errors	C19orf26	HGNC	ENSG00000099625				26	0	0	31	7	18.4211
FBXW9	0	genome.wustl.edu	37	19	12800973	12800974	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	19	12800973	12800974	-	C	INS	FBXW9	ENST00000380339	human	ensembl	74_37	-1	known	frame_shift_ins	c.925_924	p.P308fs	0.001:0.002	superfamily_WD40_repeat_dom	pfam_WD40_repeat,pfam_F-box_dom,superfamily_WD40_repeat_dom,superfamily_F-box_dom,smart_F-box_dom,smart_WD40_repeat,pfscan_F-box_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	FBXW9	HGNC	ENSG00000132004				27	0	0	29	7	19.4444
KLHL26	0	genome.wustl.edu	37	19	18780032	18780032	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	19	18780032	18780032	C	-	DEL	KLHL26	ENST00000300976	human	ensembl	74_37	+1	known	frame_shift_del	c.1825	p.R610fs	1.000	pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL26	HGNC	ENSG00000167487				75	0	0	55	13	19.1176
CRTC1	0	genome.wustl.edu	37	19	18887993	18887993	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	19	18887993	18887993	C	-	DEL	CRTC1	ENST00000338797	human	ensembl	74_37	+1	known	frame_shift_del	c.1754	p.S588fs	1.000	NULL	NULL	-	no_errors	CRTC1	HGNC	ENSG00000105662				89	0	0	73	19	20.6522
TLE2	0	genome.wustl.edu	37	19	3013795	3013796	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	19	3013795	3013796	-	G	INS	TLE2	ENST00000262953	human	ensembl	74_37	-1	known	frame_shift_ins	c.745_744	p.S248fs	1.000:1.000	NULL	pfam_Groucho/TLE_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_Groucho_enhance,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TLE2	HGNC	ENSG00000065717				112	0	0	68	28	29.1667
TSHZ3	0	genome.wustl.edu	37	19	31768896	31768896	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	19	31768896	31768896	G	-	DEL	TSHZ3	ENST00000240587	human	ensembl	74_37	-1	known	frame_shift_del	c.1803	p.M602fs	0.958	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	TSHZ3	HGNC	ENSG00000121297				160	0	0	117	37	24.026
C19orf33	0	genome.wustl.edu	37	19	38795555	38795557	+	In_Frame_Del	DEL	AGG	AGG	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	AGG	AGG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	19	38795555	38795557	AGG	-	DEL	C19orf33	ENST00000301246	human	ensembl	74_37	+1	known	in_frame_del	c.272_274	p.E92in_frame_del	0.000:0.000:0.001	NULL	NULL	-	no_errors	C19orf33	HGNC	ENSG00000167644				23	0	0	16	4	20
LMTK3	0	genome.wustl.edu	37	19	49002564	49002564	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	19	49002564	49002564	G	-	DEL	LMTK3	ENST00000270238	human	ensembl	74_37	-1	known	frame_shift_del	c.1849	p.L617fs	1.000	smart_Ser/Thr_dual-sp_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	LMTK3	HGNC	ENSG00000142235				8	0	0	1	4	80
BAX	0	genome.wustl.edu	37	19	49458971	49458971	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	19	49458971	49458971	G	-	DEL	BAX	ENST00000293288	human	ensembl	74_37	+1	known	frame_shift_del	c.114	p.E41fs	0.588	NULL	pfam_Blc2_fam,pfscan_Bcl2-like,prints_Blc2_fam	-	no_errors	BAX	HGNC	ENSG00000087088				108	1	0.917431	68	26	27.6596
MIR525	0	genome.wustl.edu	37	19	54200830	54200830	+	RNA	DEL	A	A	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	19	54200830	54200830	A	-	DEL	MIR525	ENST00000384978	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.007	-	-	-	no_errors	MIR525	HGNC	ENSG00000207711				82	0	0	56	17	23.2877
LILRB1	0	genome.wustl.edu	37	19	55147140	55147140	+	RNA	DEL	C	C	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	19	55147140	55147140	C	-	DEL	LILRB1	ENST00000462628	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	LILRB1	HGNC	ENSG00000104972				73	0	0	58	17	22.6667
PPP1R12C	0	genome.wustl.edu	37	19	55607456	55607456	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	19	55607456	55607456	G	-	DEL	PPP1R12C	ENST00000263433	human	ensembl	74_37	-1	known	frame_shift_del	c.1116	p.I373fs	0.157	pirsf_Pase-1_reg_su_12A/B/C_euk	pirsf_Pase-1_reg_su_12A/B/C_euk,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	PPP1R12C	HGNC	ENSG00000125503				61	0	0	38	18	32.1429
ENSG00000269275	0	genome.wustl.edu	37	19	55889294	55889294	+	RNA	DEL	G	G	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	19	55889294	55889294	G	-	DEL	ENSG00000269275	ENST00000595064	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CTD-2105E13.15	Clone_based_vega_gene	ENSG00000269275				33	0	0	23	8	25.8065
ZSCAN18	0	genome.wustl.edu	37	19	58596141	58596141	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	19	58596141	58596141	G	-	DEL	ZSCAN18	ENST00000600404	human	ensembl	74_37	-1	known	frame_shift_del	c.1612	p.R538fs	0.000	NULL	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN18	HGNC	ENSG00000121413				8	0	0	8	3	27.2727
ACSBG2	0	genome.wustl.edu	37	19	6147615	6147615	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	19	6147615	6147615	A	-	DEL	ACSBG2	ENST00000252669	human	ensembl	74_37	+1	known	frame_shift_del	c.226	p.K77fs	0.000	NULL	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSBG2	HGNC	ENSG00000130377				274	0	0	222	45	16.8539
OR7E24	0	genome.wustl.edu	37	19	9361741	9361741	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	19	9361741	9361741	T	-	DEL	OR7E24	ENST00000456448	human	ensembl	74_37	+1	known	frame_shift_del	c.22	p.F11fs	0.000	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR7E24	HGNC	ENSG00000237521				14	0	0	6	5	45.4545
CD8BP	0	genome.wustl.edu	37	2	107107415	107107416	+	RNA	INS	-	-	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	2	107107415	107107416	-	A	INS	CD8BP	ENST00000416057	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	CD8BP	HGNC	ENSG00000254126				74	0	0	55	22	28.5714
SEPT10	0	genome.wustl.edu	37	2	110301828	110301828	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	2	110301828	110301828	T	-	DEL	SEPT10	ENST00000356688	human	ensembl	74_37	-1	putative	frame_shift_del	c.1506	p.K502fs	0.004	NULL	pfam_Cell_div_GTP-bd,superfamily_P-loop_NTPase	-	no_errors	SEPT10	HGNC	ENSG00000186522				39	0	0	22	8	26.6667
SAP130	0	genome.wustl.edu	37	2	128767857	128767859	+	In_Frame_Del	DEL	AGT	AGT	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	AGT	AGT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	2	128767857	128767859	AGT	-	DEL	SAP130	ENST00000357702	human	ensembl	74_37	-1	known	in_frame_del	c.933_931	p.T311in_frame_del	0.908:0.990:0.962	NULL	NULL	-	no_errors	SAP130	HGNC	ENSG00000136715				91	0	0	63	19	23.1707
LRP1B	0	genome.wustl.edu	37	2	141032034	141032034	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	2	141032034	141032034	C	-	DEL	LRP1B	ENST00000389484	human	ensembl	74_37	-1	known	frame_shift_del	c.13101	p.H4368fs	0.016	smart_EG-like_dom	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702				115	0	0	83	19	18.6275
ACVR2A	0	genome.wustl.edu	37	2	148680608	148680608	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	2	148680608	148680608	T	-	DEL	ACVR2A	ENST00000241416	human	ensembl	74_37	+1	known	frame_shift_del	c.1144	p.L383fs	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_TGFB_receptor	-	no_errors	ACVR2A	HGNC	ENSG00000121989				306	0	0	238	70	22.7273
XIRP2	0	genome.wustl.edu	37	2	168101959	168101960	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	2	168101959	168101960	-	T	INS	XIRP2	ENST00000295237	human	ensembl	74_37	+1	known	frame_shift_ins	c.4057_4058	p.E1355fs	1.000:1.000	pfam_Actin-binding_Xin_repeat	pfam_Actin-binding_Xin_repeat	-	no_errors	XIRP2	HGNC	ENSG00000163092				85	0	0	69	14	16.8675
SMC6	0	genome.wustl.edu	37	2	17913083	17913084	+	Frame_Shift_Del	DEL	AC	AC	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	AC	AC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	2	17913083	17913084	AC	-	DEL	SMC6	ENST00000381272	human	ensembl	74_37	-1	known	frame_shift_del	c.484_483	p.Y162fs	1.000:0.957	superfamily_P-loop_NTPase	superfamily_P-loop_NTPase	-	no_errors	SMC6	HGNC	ENSG00000163029				85	0	0	51	19	27.1429
KCNS3	0	genome.wustl.edu	37	2	18112530	18112530	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	2	18112530	18112530	G	-	DEL	KCNS3	ENST00000304101	human	ensembl	74_37	+1	known	frame_shift_del	c.255	p.K87fs	0.895	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv3	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv2	-	no_errors	KCNS3	HGNC	ENSG00000170745				168	0	0	104	28	21.2121
COL5A2	0	genome.wustl.edu	37	2	189899775	189899775	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	2	189899775	189899775	T	-	DEL	COL5A2	ENST00000374866	human	ensembl	74_37	-1	known	frame_shift_del	c.4220	p.N1407fs	1.000	pfam_Fib_collagen_C,smart_Fib_collagen_C	pfam_Collagen,pfam_Fib_collagen_C,pfam_VWF_C,superfamily_Fibrinogen_a/b/g_C_dom,smart_VWF_C,smart_Fib_collagen_C,pfscan_VWF_C	-	no_errors	COL5A2	HGNC	ENSG00000204262				90	0	0	56	17	23.2877
SGOL2	0	genome.wustl.edu	37	2	201437004	201437004	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	2	201437004	201437004	T	-	DEL	SGOL2	ENST00000357799	human	ensembl	74_37	+1	known	frame_shift_del	c.1935	p.F648fs	0.016	NULL	NULL	-	no_errors	SGOL2	HGNC	ENSG00000163535				130	1	0.763359	56	17	23.2877
BMPR2	0	genome.wustl.edu	37	2	203420130	203420130	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	2	203420130	203420130	A	-	DEL	BMPR2	ENST00000374580	human	ensembl	74_37	+1	known	frame_shift_del	c.1742	p.N583fs	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	BMPR2	HGNC	ENSG00000204217				103	0	0	74	16	17.7778
ABI2	0	genome.wustl.edu	37	2	204193211	204193213	+	RNA	DEL	GAG	GAG	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	GAG	GAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	2	204193211	204193213	GAG	-	DEL	ABI2	ENST00000376135	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000:1.000:1.000	-	-	-	no_errors	ABI2	HGNC	ENSG00000138443				11	0	0	4	2	33.3333
HEATR5B	0	genome.wustl.edu	37	2	37208634	37208635	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	2	37208634	37208635	-	A	INS	HEATR5B	ENST00000233099	human	ensembl	74_37	-1	known	frame_shift_ins	c.6215_6214	p.*2072fs	0.999:1.000	NULL	superfamily_ARM-type_fold	-	no_errors	HEATR5B	HGNC	ENSG00000008869				36	0	0	26	6	18.75
SOS1	0	genome.wustl.edu	37	2	39222520	39222520	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	2	39222520	39222520	T	-	DEL	SOS1	ENST00000402219	human	ensembl	74_37	-1	known	frame_shift_del	c.3090	p.K1030fs	1.000	superfamily_Ras_GEF_dom	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Histone_core_D,superfamily_Ras_GEF_dom,superfamily_Histone-fold,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_Pleckstrin_homology,pfscan_DH-domain,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	SOS1	HGNC	ENSG00000115904				107	1	0.925926	70	18	20.4545
MAP4K3	0	genome.wustl.edu	37	2	39552896	39552897	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	2	39552896	39552897	-	T	INS	MAP4K3	ENST00000263881	human	ensembl	74_37	-1	known	frame_shift_ins	c.782_781	p.R261fs	1.000:1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Citron,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_dom	-	no_errors	MAP4K3	HGNC	ENSG00000011566				93	0	0	41	9	18
PSME4	0	genome.wustl.edu	37	2	54093345	54093345	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	2	54093345	54093345	T	-	DEL	PSME4	ENST00000404125	human	ensembl	74_37	-1	known	frame_shift_del	c.5413	p.T1805fs	1.000	pfam_DUF3437,superfamily_ARM-type_fold	pfam_DUF3437,superfamily_ARM-type_fold	-	no_errors	PSME4	HGNC	ENSG00000068878				136	0	0	105	44	29.5302
MTIF2	0	genome.wustl.edu	37	2	55464461	55464461	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	2	55464461	55464461	T	-	DEL	MTIF2	ENST00000263629	human	ensembl	74_37	-1	known	frame_shift_del	c.1974	p.K658fs	0.996	superfamily_Transl_B-barrel	pfam_EF_GTP-bd_dom,pfam_TIF_IF2_dom3,pfam_Transl_elong_EFTu/EF1A_2,pfam_MIRO-like,pfam_GTP_binding_domain,pfam_Small_GTPase,pfam_SRP_receptor_beta_su,superfamily_P-loop_NTPase,superfamily_TIF_IF2_dom3,superfamily_Transl_B-barrel,tigrfam_Small_GTP-bd_dom	-	no_errors	MTIF2	HGNC	ENSG00000085760				92	0	0	55	25	31.25
SUCLG1	0	genome.wustl.edu	37	2	84650857	84650857	+	RNA	DEL	T	T	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	2	84650857	84650857	T	-	DEL	SUCLG1	ENST00000491123	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	SUCLG1	HGNC	ENSG00000163541				22	0	0	4	4	50
EIF2AK3	0	genome.wustl.edu	37	2	88874268	88874269	+	Frame_Shift_Ins	INS	-	-	CT			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	2	88874268	88874269	-	CT	INS	EIF2AK3	ENST00000303236	human	ensembl	74_37	-1	known	frame_shift_ins	c.2733_2732	p.S912fs	0.922:0.973	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Quinonprotein_ADH-like_supfam,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	EIF2AK3	HGNC	ENSG00000172071				118	0	0	89	6	6.31579
BTBD3	0	genome.wustl.edu	37	20	11899210	11899210	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	20	11899210	11899210	C	-	DEL	BTBD3	ENST00000378226	human	ensembl	74_37	+1	known	frame_shift_del	c.287	p.P97fs	1.000	superfamily_BTB/POZ_fold	pfam_PHR,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	BTBD3	HGNC	ENSG00000132640				169	0	0	186	22	10.5769
CD93	0	genome.wustl.edu	37	20	23065992	23065992	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	20	23065992	23065992	C	-	DEL	CD93	ENST00000246006	human	ensembl	74_37	-1	known	frame_shift_del	c.838	p.D280fs	0.033	pirsf_CD93/CD141,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom	pirsf_CD93/CD141,pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_C-type_lectin,superfamily_C-type_lectin_fold,superfamily_MFS_dom_general_subst_transpt,smart_C-type_lectin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_C-type_lectin	-	no_errors	CD93	HGNC	ENSG00000125810				202	0	0	137	38	21.7143
SLC4A11	0	genome.wustl.edu	37	20	3215425	3215425	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	20	3215425	3215425	A	-	DEL	SLC4A11	ENST00000380059	human	ensembl	74_37	-1	known	frame_shift_del	c.333	p.F111fs	1.000	NULL	pfam_HCO3_transpt_C,pfam_PTS_EIIA_type-2_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk	-	no_errors	SLC4A11	HGNC	ENSG00000088836				76	0	0	45	17	27.4194
SYCP2	0	genome.wustl.edu	37	20	58444990	58444990	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	20	58444990	58444990	T	-	DEL	SYCP2	ENST00000357552	human	ensembl	74_37	-1	known	frame_shift_del	c.3604	p.I1202fs	0.000	NULL	NULL	-	no_errors	SYCP2	HGNC	ENSG00000196074				45	0	0	19	4	17.3913
MTG2	0	genome.wustl.edu	37	20	60770930	60770931	+	Frame_Shift_Del	DEL	CA	CA	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	20	60770930	60770931	CA	-	DEL	MTG2	ENST00000370823	human	ensembl	74_37	+1	known	frame_shift_del	c.277_278	p.H93fs	1.000:1.000	pfam_GTP1_OBG_dom,superfamily_GTP1_OBG_dom,pirsf_GTP-bd_Obg/CgtA,tigrfam_GTP-bd_Obg/CgtA	pfam_GTP1_OBG_dom,pfam_GTP_binding_domain,pfam_Fe2_transport_prot_B_N,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,superfamily_GTP1_OBG_dom,pirsf_GTP-bd_Obg/CgtA,prints_GTP_binding_domain,tigrfam_GTP-bd_Obg/CgtA,tigrfam_Small_GTP-bd_dom	-	no_errors	MTG2	HGNC	ENSG00000101181				59	0	0	37	15	28.8462
DIDO1	0	genome.wustl.edu	37	20	61511207	61511207	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	20	61511207	61511207	G	-	DEL	DIDO1	ENST00000266070	human	ensembl	74_37	-1	known	frame_shift_del	c.6101	p.P2034fs	0.795	NULL	pfam_TFIIS_cen_dom,pfam_SPOC_C,pfam_Znf_PHD-finger,superfamily_TFIIS_cen_dom,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_TFS2M,pfscan_Znf_PHD-finger	-	no_errors	DIDO1	HGNC	ENSG00000101191				36	0	0	46	12	20.6897
COL18A1	0	genome.wustl.edu	37	21	46888672	46888673	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	21	46888672	46888673	-	G	INS	COL18A1	ENST00000359759	human	ensembl	74_37	+1	known	frame_shift_ins	c.1868_1869	p.A626fs	0.996:0.000	superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	pfam_Collagenase_NC10/endostatin,pfam_DUF959_COL18_N,pfam_Collagen,pfam_Frizzled_dom,superfamily_C-type_lectin_fold,superfamily_ConA-like_lec_gl_sf,superfamily_Frizzled_dom,smart_Frizzled_dom,smart_Laminin_G,pfscan_Frizzled_dom	-	no_errors	COL18A1	HGNC	ENSG00000182871				15	0	0	13	2	13.3333
C22orf24	0	genome.wustl.edu	37	22	32334105	32334105	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	22	32334105	32334105	A	-	DEL	C22orf24	ENST00000543051	human	ensembl	74_37	-1	known	frame_shift_del	c.149	p.F50fs	0.000	NULL	NULL	-	no_errors	C22orf24	HGNC	ENSG00000128254				115	0	0	108	6	5.26316
SREBF2	0	genome.wustl.edu	37	22	42271637	42271637	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	22	42271637	42271637	C	-	DEL	SREBF2	ENST00000361204	human	ensembl	74_37	+1	known	frame_shift_del	c.1295	p.P434fs	1.000	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	SREBF2	HGNC	ENSG00000198911				124	1	0.8	83	25	23.1481
SAMM50	0	genome.wustl.edu	37	22	44392208	44392209	+	RNA	INS	-	-	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	22	44392208	44392209	-	T	INS	SAMM50	ENST00000493621	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	SAMM50	HGNC	ENSG00000100347				633	1	0.157729	533	42	7.30435
ARHGAP8	0	genome.wustl.edu	37	22	45127647	45127649	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	22	45127647	45127649	CTT	-	DEL	ARHGAP8	ENST00000517296	human	ensembl	74_37	+1	known	in_frame_del	c.360_362	p.F123in_frame_del	0.996:1.000:1.000	pfam_HbrB	pfam_RhoGAP_dom,pfam_HbrB,pfam_CRAL-TRIO_dom,superfamily_Rho_GTPase_activation_prot,superfamily_CRAL-TRIO_dom,smart_RhoGAP_dom,pfscan_CRAL-TRIO_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP8	HGNC	ENSG00000241484				61	0	0	52	15	22.3881
TRMU	0	genome.wustl.edu	37	22	46746285	46746285	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	22	46746285	46746285	G	-	DEL	TRMU	ENST00000290846	human	ensembl	74_37	+1	known	frame_shift_del	c.576	p.G194fs	0.998	pfam_tRNA-specific_2-thiouridylase,tigrfam_tRNA-specific_2-thiouridylase	pfam_tRNA-specific_2-thiouridylase,pfam_ThiI_C_dom,pfam_NAD/GMP_synthase,tigrfam_tRNA-specific_2-thiouridylase	-	no_errors	TRMU	HGNC	ENSG00000100416				131	0	0	123	8	6.10687
TBC1D23	0	genome.wustl.edu	37	3	100039735	100039736	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	3	100039735	100039736	-	A	INS	TBC1D23	ENST00000394144	human	ensembl	74_37	+1	known	frame_shift_ins	c.1938_1939	p.H649fs	1.000:1.000	NULL	pfam_Rab-GTPase-TBC_dom,pfam_Rhodanese-like_dom,superfamily_Rab-GTPase-TBC_dom,superfamily_Rhodanese-like_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom,pfscan_Rhodanese-like_dom	-	no_errors	TBC1D23	HGNC	ENSG00000036054				65	0	0	44	9	16.9811
MORC1	0	genome.wustl.edu	37	3	108682418	108682419	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	3	108682418	108682419	-	T	INS	MORC1	ENST00000232603	human	ensembl	74_37	-1	known	frame_shift_ins	c.2642_2641	p.I881fs	0.154:0.062	NULL	pfam_Znf_CW,superfamily_HATPase_ATP-bd,pfscan_Znf_CW	-	no_errors	MORC1	HGNC	ENSG00000114487				37	0	0	16	5	23.8095
ZBTB20	0	genome.wustl.edu	37	3	114058003	114058003	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	3	114058003	114058003	G	-	DEL	ZBTB20	ENST00000474710	human	ensembl	74_37	-1	known	frame_shift_del	c.2075	p.P692fs	0.678	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB20	HGNC	ENSG00000181722				49	0	0	31	15	32.6087
POLQ	0	genome.wustl.edu	37	3	121207489	121207489	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	3	121207489	121207489	A	-	DEL	POLQ	ENST00000264233	human	ensembl	74_37	-1	known	frame_shift_del	c.4289	p.L1430fs	0.152	NULL	pfam_DNA-dir_DNA_pol_A_palm_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_RNaseH-like_dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_DNA-dir_DNA_pol_A_palm_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_DNA_polymerase_A	-	no_errors	POLQ	HGNC	ENSG00000051341				37	0	0	19	7	26.9231
ILDR1	0	genome.wustl.edu	37	3	121712444	121712444	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	3	121712444	121712444	C	-	DEL	ILDR1	ENST00000344209	human	ensembl	74_37	-1	known	frame_shift_del	c.1152	p.P385fs	0.001	NULL	pfam_LISCH7,smart_Ig_sub	-	no_errors	ILDR1	HGNC	ENSG00000145103				91	0	0	77	17	18.0851
IQSEC1	0	genome.wustl.edu	37	3	12977232	12977232	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	3	12977232	12977232	G	-	DEL	IQSEC1	ENST00000273221	human	ensembl	74_37	-1	known	frame_shift_del	c.1326	p.R443fs	1.000	NULL	pfam_Sec7_dom,superfamily_Sec7_dom,smart_Sec7_dom,smart_Pleckstrin_homology,pfscan_IQ_motif_EF-hand-BS,pfscan_Sec7_dom	-	no_errors	IQSEC1	HGNC	ENSG00000144711				40	0	0	26	8	23.5294
NUP210	0	genome.wustl.edu	37	3	13438890	13438890	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	3	13438890	13438890	G	-	DEL	NUP210	ENST00000254508	human	ensembl	74_37	-1	known	frame_shift_del	c.403	p.L135fs	0.996	superfamily_Cadherin-like	pfam_Big_2,superfamily_Invasin/intimin_cell_adhesion,superfamily_Cadherin-like,smart_Big_2	-	no_errors	NUP210	HGNC	ENSG00000132182				61	0	0	46	20	30.303
MSL2	0	genome.wustl.edu	37	3	135870433	135870433	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	3	135870433	135870433	T	-	DEL	MSL2	ENST00000309993	human	ensembl	74_37	-1	known	frame_shift_del	c.1290	p.D431fs	1.000	NULL	pfscan_Znf_RING	-	no_errors	MSL2	HGNC	ENSG00000174579				116	0	0	59	15	20.2703
FAIM	0	genome.wustl.edu	37	3	138340266	138340266	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	3	138340266	138340266	A	-	DEL	FAIM	ENST00000338446	human	ensembl	74_37	+1	known	frame_shift_del	c.98	p.M35fs	0.997	pfam_FAIM	pfam_FAIM	-	no_errors	FAIM	HGNC	ENSG00000158234				126	0	0	64	18	21.9512
GALNT15	0	genome.wustl.edu	37	3	16217061	16217062	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	3	16217061	16217062	-	G	INS	GALNT15	ENST00000339732	human	ensembl	74_37	+1	known	frame_shift_ins	c.403_404	p.A137fs	0.999:0.998	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT15	HGNC	ENSG00000131386				34	0	0	27	11	28.9474
ABCC5	0	genome.wustl.edu	37	3	183665256	183665257	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	3	183665256	183665257	-	A	INS	ABCC5	ENST00000334444	human	ensembl	74_37	-1	known	frame_shift_ins	c.3270_3269	p.L1090fs	1.000:1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC1_TM_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCC5	HGNC	ENSG00000114770				26	0	0	18	2	10
SGOL1	0	genome.wustl.edu	37	3	20212755	20212755	+	RNA	DEL	A	A	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	3	20212755	20212755	A	-	DEL	SGOL1	ENST00000460637	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	SGOL1	HGNC	ENSG00000129810				25	0	0	14	4	22.2222
DYNC1LI1	0	genome.wustl.edu	37	3	32571049	32571050	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	3	32571049	32571050	-	T	INS	DYNC1LI1	ENST00000273130	human	ensembl	74_37	-1	known	frame_shift_ins	c.1289_1288	p.I430fs	1.000:1.000	pfam_Dynein_light_int_chain	pfam_Dynein_light_int_chain,superfamily_P-loop_NTPase	-	no_errors	DYNC1LI1	HGNC	ENSG00000144635				42	0	0	24	4	14.2857
WDR48	0	genome.wustl.edu	37	3	39135499	39135501	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	3	39135499	39135501	AAG	-	DEL	WDR48	ENST00000302313	human	ensembl	74_37	+1	known	in_frame_del	c.1880_1882	p.E629in_frame_del	1.000:1.000:1.000	pfam_DUF3337	pfam_DUF3337,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR48	HGNC	ENSG00000114742				79	0	0	44	20	31.25
GORASP1	0	genome.wustl.edu	37	3	39145036	39145038	+	In_Frame_Del	DEL	CTC	CTC	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	3	39145036	39145038	CTC	-	DEL	GORASP1	ENST00000319283	human	ensembl	74_37	-1	known	in_frame_del	c.72_70	p.E24in_frame_del	1.000:1.000:1.000	pfam_GRASP55/65_PDZ,superfamily_PDZ	pfam_GRASP55/65_PDZ,superfamily_PDZ	-	no_errors	GORASP1	HGNC	ENSG00000114745				66	0	0	48	14	22.5806
XIRP1	0	genome.wustl.edu	37	3	39227535	39227535	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	3	39227535	39227535	C	-	DEL	XIRP1	ENST00000340369	human	ensembl	74_37	-1	known	frame_shift_del	c.3402	p.W1135fs	0.997	NULL	pfam_Actin-binding_Xin_repeat	-	no_errors	XIRP1	HGNC	ENSG00000168334				180	0	0	135	32	19.1617
GLT8D1	0	genome.wustl.edu	37	3	52730572	52730572	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	3	52730572	52730572	C	-	DEL	GLT8D1	ENST00000266014	human	ensembl	74_37	-1	known	frame_shift_del	c.433	p.E145fs	0.994	pfam_Glyco_trans_8	pfam_Glyco_trans_8	-	no_errors	GLT8D1	HGNC	ENSG00000016864				67	0	0	47	17	26.5625
USP38	0	genome.wustl.edu	37	4	144135592	144135593	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	4	144135592	144135593	-	A	INS	USP38	ENST00000307017	human	ensembl	74_37	+1	known	frame_shift_ins	c.2463_2464	p.L823fs	1.000:1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP38	HGNC	ENSG00000170185				105	0	0	64	18	21.9512
CPEB2	0	genome.wustl.edu	37	4	15067858	15067858	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	4	15067858	15067858	T	-	DEL	CPEB2	ENST00000538197	human	ensembl	74_37	+1	known	frame_shift_del	c.2959	p.C989fs	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CPEB2	HGNC	ENSG00000137449				159	0	0	158	33	17.2775
TKTL2	0	genome.wustl.edu	37	4	164394544	164394544	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	4	164394544	164394544	G	-	DEL	TKTL2	ENST00000280605	human	ensembl	74_37	-1	known	frame_shift_del	c.343	p.R115fs	0.001	pfam_Transketolase_N	pfam_Transketolase_N,pfam_Transketolase-like_Pyr-bd,pfam_Transketolase_C,pfam_DH_E1,superfamily_Transketo_C/Pyr-ferredox_oxred,smart_Transketolase-like_Pyr-bd	-	no_errors	TKTL2	HGNC	ENSG00000151005				55	0	0	50	13	20.6349
GPR125	0	genome.wustl.edu	37	4	22389604	22389605	+	Frame_Shift_Del	DEL	TC	TC	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	TC	TC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	4	22389604	22389605	TC	-	DEL	GPR125	ENST00000334304	human	ensembl	74_37	-1	known	frame_shift_del	c.3690_3689	p.R1230fs	0.297:1.000	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_GPCR_2_extracellular_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,pfscan_Ig-like_dom	-	no_errors	GPR125	HGNC	ENSG00000152990				106	0	0	107	25	18.9394
RBPJ	0	genome.wustl.edu	37	4	26417146	26417146	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	4	26417146	26417146	A	-	DEL	RBPJ	ENST00000342295	human	ensembl	74_37	+1	known	frame_shift_del	c.244	p.E85fs	1.000	pfam_LAG1_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_Beta-trefoil_DNA-bd_dom,pfam_LAG1_DNA-bd,pfam_IPT,superfamily_Beta-trefoil_DNA-bd_dom,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set	-	no_errors	RBPJ	HGNC	ENSG00000168214				112	0	0	83	23	21.6981
POLR2B	0	genome.wustl.edu	37	4	57871589	57871589	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	4	57871589	57871589	A	-	DEL	POLR2B	ENST00000314595	human	ensembl	74_37	+1	known	frame_shift_del	c.1078	p.A362fs	1.000	pfam_RNA_pol_bsu_protrusion,pfam_RNA_pol_Rpb2_2	pfam_DNA-dir_RNA_pol_su2_6,pfam_RNA_pol_bsu_protrusion,pfam_RNA_pol_Rpb2_2,pfam_RNA_pol_Rpb2_7,pfam_RNA_pol_Rpb2_4,pfam_RNA_pol_Rpb2_3,pfam_RNA_pol_Rpb2_5	-	no_errors	POLR2B	HGNC	ENSG00000047315				138	0	0	59	16	21.3333
PCGF3	0	genome.wustl.edu	37	4	728799	728799	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	4	728799	728799	C	-	DEL	PCGF3	ENST00000362003	human	ensembl	74_37	+1	known	frame_shift_del	c.189	p.L65fs	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	PCGF3	HGNC	ENSG00000185619				50	0	0	17	4	19.0476
ANTXR2	0	genome.wustl.edu	37	4	80905990	80905990	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	4	80905990	80905990	C	-	DEL	ANTXR2	ENST00000307333	human	ensembl	74_37	-1	known	frame_shift_del	c.1069	p.A357fs	0.559	pirsf_Anthrax_toxin_rcpt	pirsf_Anthrax_toxin_rcpt,pfam_Anthrax_toxin_rcpt_C,pfam_Anthrax_toxin_rcpt_extracel,pfam_VWF_A,superfamily_Ig_E-set,smart_VWF_A,pfscan_VWF_A	-	no_errors	ANTXR2	HGNC	ENSG00000163297				23	0	0	22	3	12
ABCG2	0	genome.wustl.edu	37	4	89052270	89052271	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	4	89052270	89052271	-	T	INS	ABCG2	ENST00000237612	human	ensembl	74_37	-1	known	frame_shift_ins	c.474_473	p.N158fs	1.000:1.000	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_2_trans,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCG2	HGNC	ENSG00000118777				177	0	0	144	27	15.7895
GRID2	0	genome.wustl.edu	37	4	93225753	93225753	+	RNA	DEL	A	A	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	4	93225753	93225753	A	-	DEL	GRID2	ENST00000505687	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GRID2	HGNC	ENSG00000152208				18	0	0	9	5	35.7143
APC	0	genome.wustl.edu	37	5	112164566	112164566	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	5	112164566	112164566	T	-	DEL	APC	ENST00000257430	human	ensembl	74_37	+1	known	frame_shift_del	c.1640	p.L548fs	1.000	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo	pfam_APC_basic_dom,pfam_EB1-bd,pfam_APC_Cys-rich_rpt,pfam_Armadillo,pfam_APC_dom,pfam_SAMP,pfam_APC_15aa_rpt,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	APC	HGNC	ENSG00000134982				67	0	0	43	9	17.3077
DNAH5	0	genome.wustl.edu	37	5	13701426	13701426	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	5	13701426	13701426	A	-	DEL	DNAH5	ENST00000265104	human	ensembl	74_37	-1	known	frame_shift_del	c.13458	p.F4486fs	1.000	pfam_Dynein_heavy_dom	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139				119	0	0	81	21	20.5882
RBM27	0	genome.wustl.edu	37	5	145647320	145647320	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	5	145647320	145647320	A	-	DEL	RBM27	ENST00000265271	human	ensembl	74_37	+1	known	frame_shift_del	c.2440	p.K816fs	1.000	NULL	pfam_PWI_dom,pfam_Znf_CCCH,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM27	HGNC	ENSG00000091009				68	0	0	48	6	11.1111
LARP1	0	genome.wustl.edu	37	5	154173390	154173390	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	5	154173390	154173390	C	-	DEL	LARP1	ENST00000336314	human	ensembl	74_37	+1	known	frame_shift_del	c.668	p.T226fs	0.999	NULL	pfam_Lupus_La_RNA-bd,smart_Lupus_La_RNA-bd,smart_DM15,pfscan_Lupus_La_RNA-bd	-	no_errors	LARP1	HGNC	ENSG00000155506				291	0	0	244	56	18.6667
ZFR	0	genome.wustl.edu	37	5	32403482	32403482	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	5	32403482	32403482	T	-	DEL	ZFR	ENST00000265069	human	ensembl	74_37	-1	known	frame_shift_del	c.1245	p.K415fs	1.000	NULL	pfam_DZF,pfam_Znf_C2H2_jaz,smart_Znf_U1,smart_Znf_C2H2-like,smart_DZF	-	no_errors	ZFR	HGNC	ENSG00000056097				127	0	0	109	8	6.83761
ADAMTS12	0	genome.wustl.edu	37	5	33881400	33881401	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	5	33881400	33881401	-	A	INS	ADAMTS12	ENST00000504830	human	ensembl	74_37	-1	known	frame_shift_ins	c.313_312	p.N104fs	1.000:0.991	pfam_Peptidase_M12B_N	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS12	HGNC	ENSG00000151388				152	0	0	105	27	20.4545
SOBP	0	genome.wustl.edu	37	6	107955431	107955431	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	6	107955431	107955431	C	-	DEL	SOBP	ENST00000317357	human	ensembl	74_37	+1	known	frame_shift_del	c.1383	p.P463fs	1.000	NULL	NULL	-	no_errors	SOBP	HGNC	ENSG00000112320				34	0	0	17	5	22.7273
ENSG00000229036	0	genome.wustl.edu	37	6	143811978	143811978	+	RNA	DEL	A	A	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	6	143811978	143811978	A	-	DEL	ENSG00000229036	ENST00000589563	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP1-20N2.6	Clone_based_vega_gene	ENSG00000229036				36	0	0	39	4	9.30233
RMND1	0	genome.wustl.edu	37	6	151766726	151766726	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	6	151766726	151766726	T	-	DEL	RMND1	ENST00000367303	human	ensembl	74_37	-1	known	frame_shift_del	c.221	p.K74fs	0.000	NULL	pfam_DUF155	-	no_errors	RMND1	HGNC	ENSG00000155906				268	0	0	215	12	5.28634
IGF2R	0	genome.wustl.edu	37	6	160485488	160485488	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	6	160485488	160485488	G	-	DEL	IGF2R	ENST00000356956	human	ensembl	74_37	+1	known	frame_shift_del	c.3942	p.D1317fs	0.125	pfam_CIMR,superfamily_Man6P_isomerase_rcpt-bd_dom	pfam_CIMR,pfam_FN_type2_col-bd,superfamily_Man6P_isomerase_rcpt-bd_dom,superfamily_Kringle-like,smart_FN_type2_col-bd,pfscan_FN_type2_col-bd	-	no_errors	IGF2R	HGNC	ENSG00000197081				192	0	0	150	19	11.2426
RBM24	0	genome.wustl.edu	37	6	17292449	17292450	+	RNA	DEL	AA	AA	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	6	17292449	17292450	AA	-	DEL	RBM24	ENST00000508508	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.915:0.719	-	-	-	no_errors	RBM24	HGNC	ENSG00000112183				19	0	0	10	3	23.0769
HIST1H1B	0	genome.wustl.edu	37	6	27835239	27835241	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	6	27835239	27835241	CTT	-	DEL	HIST1H1B	ENST00000331442	human	ensembl	74_37	-1	known	in_frame_del	c.69_67	p.K23in_frame_del	0.386:1.000:1.000	NULL	pfam_Histone_H1/H5_H15,smart_Histone_H1/H5_H15,prints_Histone_H5	-	no_errors	HIST1H1B	HGNC	ENSG00000184357				52	0	0	28	9	24.3243
GPX5	0	genome.wustl.edu	37	6	28497212	28497212	+	RNA	DEL	A	A	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	6	28497212	28497212	A	-	DEL	GPX5	ENST00000442674	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.025	-	-	-	no_errors	GPX5	HGNC	ENSG00000224586				75	0	0	39	5	11.3636
MRPS18B	0	genome.wustl.edu	37	6	30587710	30587712	+	In_Frame_Del	DEL	GTT	GTT	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	GTT	GTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	6	30587710	30587712	GTT	-	DEL	MRPS18B	ENST00000259873	human	ensembl	74_37	+1	known	in_frame_del	c.298_300	p.V101in_frame_del	0.985:0.997:0.995	superfamily_Ribosomal_S18	pfam_Ribosomal_S18,superfamily_Ribosomal_S18	-	no_errors	MRPS18B	HGNC	ENSG00000204568				182	0	0	116	20	14.7059
STK38	0	genome.wustl.edu	37	6	36465583	36465583	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	6	36465583	36465583	A	-	DEL	STK38	ENST00000229812	human	ensembl	74_37	-1	known	frame_shift_del	c.1146	p.F382fs	1.000	superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_dom	-	no_errors	STK38	HGNC	ENSG00000112079				91	0	0	33	13	28.2609
SMAP1	0	genome.wustl.edu	37	6	71546674	71546674	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	6	71546674	71546674	A	-	DEL	SMAP1	ENST00000370455	human	ensembl	74_37	+1	known	frame_shift_del	c.607	p.S205fs	0.970	NULL	pfam_ArfGAP,smart_ArfGAP,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	SMAP1	HGNC	ENSG00000112305				26	0	0	15	5	25
TTK	0	genome.wustl.edu	37	6	80751910	80751910	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	6	80751910	80751910	A	-	DEL	TTK	ENST00000369798	human	ensembl	74_37	+1	known	frame_shift_del	c.2565	p.K857fs	0.011	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TTK	HGNC	ENSG00000112742				73	0	0	23	4	14.8148
MEPCE	0	genome.wustl.edu	37	7	100028067	100028068	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	7	100028067	100028068	-	G	INS	MEPCE	ENST00000310512	human	ensembl	74_37	+1	known	frame_shift_ins	c.426_427	p.G145fs	0.466:0.496	NULL	pfam_Bin3	-	no_errors	MEPCE	HGNC	ENSG00000146834				34	0	0	18	10	35.7143
GIGYF1	0	genome.wustl.edu	37	7	100284335	100284337	+	In_Frame_Del	DEL	CCT	CCT	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	CCT	CCT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	7	100284335	100284337	CCT	-	DEL	GIGYF1	ENST00000275732	human	ensembl	74_37	-1	known	in_frame_del	c.631_629	p.E210in_frame_del	1.000:0.992:0.999	NULL	pfam_GYF,superfamily_GYF,smart_GYF,pfscan_GYF	-	no_errors	GIGYF1	HGNC	ENSG00000146830				31	0	0	41	4	8.88889
CBLL1	0	genome.wustl.edu	37	7	107395909	107395909	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	7	107395909	107395909	A	-	DEL	CBLL1	ENST00000440859	human	ensembl	74_37	+1	known	frame_shift_del	c.413	p.K140fs	1.000	pfscan_Znf_RING	pfscan_Znf_RING	-	no_errors	CBLL1	HGNC	ENSG00000105879				269	2	0.738007	117	29	19.863
LAMB4	0	genome.wustl.edu	37	7	107745044	107745045	+	Frame_Shift_Del	DEL	AC	AC	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	AC	AC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	7	107745044	107745045	AC	-	DEL	LAMB4	ENST00000205386	human	ensembl	74_37	-1	known	frame_shift_del	c.891_890	p.C297fs	0.983:1.000	pfam_EGF_laminin,smart_EGF_laminin,pfscan_EGF_laminin	pfam_EGF_laminin,pfam_Laminin_N,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,pfscan_Laminin_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB4	HGNC	ENSG00000091128				301	1	0.331126	259	56	17.7778
ATG9B	0	genome.wustl.edu	37	7	150720306	150720307	+	RNA	INS	-	-	G			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	7	150720306	150720307	-	G	INS	ATG9B	ENST00000473698	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.007	-	-	-	no_errors	ATG9B	HGNC	ENSG00000181652				135	1	0.735294	139	22	13.6646
ABCB4	0	genome.wustl.edu	37	7	87074282	87074282	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	7	87074282	87074282	A	-	DEL	ABCB4	ENST00000265723	human	ensembl	74_37	-1	known	frame_shift_del	c.1015	p.S339fs	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,pfam_ABC_ATPase_put,pfam_Zeta_toxin_domain,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCB4	HGNC	ENSG00000005471				32	0	0	19	6	24
MTERF	0	genome.wustl.edu	37	7	91509448	91509449	+	RNA	INS	-	-	AA			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	7	91509448	91509449	-	AA	INS	MTERF	ENST00000481516	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.003	-	-	-	no_errors	MTERF	HGNC	ENSG00000127989				27	0	0	18	5	21.7391
FAM135B	0	genome.wustl.edu	37	8	139151232	139151232	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	8	139151232	139151232	T	-	DEL	FAM135B	ENST00000395297	human	ensembl	74_37	-1	known	frame_shift_del	c.3898	p.T1300fs	1.000	pfam_DUF676_lipase-like	pfam_DUF676_lipase-like,pfam_DUF3657,pfam_PGAP1-like	-	no_errors	FAM135B	HGNC	ENSG00000147724				86	0	0	61	16	20.7792
EPPK1	0	genome.wustl.edu	37	8	144941378	144941378	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	8	144941378	144941378	C	-	DEL	EPPK1	ENST00000525985	human	ensembl	74_37	-1	known	frame_shift_del	c.6044	p.G2015fs	0.996	pfam_Plectin_repeat,smart_Plectin_repeat	pfam_Plectin_repeat,smart_Plectin_repeat	-	no_errors	EPPK1	HGNC	ENSG00000227184				36	0	0	21	14	40
PLEC	0	genome.wustl.edu	37	8	144995352	144995352	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	8	144995352	144995352	C	-	DEL	PLEC	ENST00000322810	human	ensembl	74_37	-1	known	frame_shift_del	c.9048	p.C3017fs	0.002	NULL	pfam_Plectin_repeat,pfam_CH-domain,pfam_S10_plectin_N,superfamily_CH-domain,superfamily_Chorismate_mutase_type_II,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,pfscan_CH-domain	-	no_errors	PLEC	HGNC	ENSG00000178209				91	0	0	69	14	16.8675
OPLAH	0	genome.wustl.edu	37	8	145113719	145113720	+	Frame_Shift_Del	DEL	GA	GA	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	GA	GA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	8	145113719	145113720	GA	-	DEL	OPLAH	ENST00000426825	human	ensembl	74_37	-1	known	frame_shift_del	c.544_543	p.G183fs	0.559:0.439	pfam_Hydant_A_N	pfam_Hydantoinase_B,pfam_Hydantoinase_A,pfam_Hydant_A_N	-	no_errors	OPLAH	HGNC	ENSG00000178814				14	0	0	9	4	30.7692
TUBBP1	0	genome.wustl.edu	37	8	30209504	30209504	+	RNA	DEL	A	A	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	8	30209504	30209504	A	-	DEL	TUBBP1	ENST00000518096	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.026	-	-	-	no_errors	TUBBP1	HGNC	ENSG00000127589				47	0	0	36	11	23.4043
WRN	0	genome.wustl.edu	37	8	30915970	30915971	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	8	30915970	30915971	-	A	INS	WRN	ENST00000298139	human	ensembl	74_37	+1	known	frame_shift_ins	c.7_8	p.L6fs	0.148:0.139	NULL	pfam_3'-5'_exonuclease_dom,pfam_Helicase_C,pfam_RQC_domain,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_HRDC_dom,superfamily_P-loop_NTPase,superfamily_RNaseH-like_dom,superfamily_HRDC-like,smart_3'-5'_exonuclease_dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_RQC_domain,smart_HRDC_dom,pfscan_HRDC_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ	-	no_errors	WRN	HGNC	ENSG00000165392				34	0	0	16	8	33.3333
XKR4	0	genome.wustl.edu	37	8	56270310	56270311	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	8	56270310	56270311	-	A	INS	XKR4	ENST00000327381	human	ensembl	74_37	+1	known	frame_shift_ins	c.879_880	p.M294fs	1.000:1.000	pfam_Transport_prot_XK	pfam_Transport_prot_XK	-	no_errors	XKR4	HGNC	ENSG00000206579				173	0	0	115	27	19.0141
COL27A1	0	genome.wustl.edu	37	9	117069907	117069907	+	RNA	DEL	C	C	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	9	117069907	117069907	C	-	DEL	COL27A1	ENST00000468565	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	COL27A1	HGNC	ENSG00000196739				83	0	0	43	15	25.8621
FNBP1	0	genome.wustl.edu	37	9	132678318	132678318	+	RNA	DEL	A	A	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	9	132678318	132678318	A	-	DEL	FNBP1	ENST00000462766	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	FNBP1	HGNC	ENSG00000187239				11	0	0	11	5	31.25
NTNG2	0	genome.wustl.edu	37	9	135116231	135116232	+	RNA	INS	-	-	G			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	9	135116231	135116232	-	G	INS	NTNG2	ENST00000490694	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.001	-	-	-	no_errors	NTNG2	HGNC	ENSG00000196358				18	0	0	14	2	12.5
WDR5	0	genome.wustl.edu	37	9	137019598	137019598	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	9	137019598	137019598	C	-	DEL	WDR5	ENST00000358625	human	ensembl	74_37	+1	known	frame_shift_del	c.642	p.V217fs	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_TIF_beta_prop-like,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR5	HGNC	ENSG00000196363				484	1	0.206186	376	51	11.9438
PSIP1	0	genome.wustl.edu	37	9	15472612	15472613	+	RNA	DEL	AA	AA	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	9	15472612	15472613	AA	-	DEL	PSIP1	ENST00000495873	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001:0.000	-	-	-	no_errors	PSIP1	HGNC	ENSG00000164985				56	0	0	42	11	20.7547
ADAMTSL1	0	genome.wustl.edu	37	9	18680350	18680350	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	9	18680350	18680350	G	-	DEL	ADAMTSL1	ENST00000327883	human	ensembl	74_37	+1	known	frame_shift_del	c.1177	p.G395fs	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,pfam_ADAM_spacer1,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_Thrombospondin_1_rpt	-	no_errors	ADAMTSL1	HGNC	ENSG00000178031				70	0	0	42	11	20.7547
UHRF2	0	genome.wustl.edu	37	9	6499822	6499822	+	RNA	DEL	C	C	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	9	6499822	6499822	C	-	DEL	UHRF2	ENST00000492853	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	UHRF2	HGNC	ENSG00000147854				41	0	0	31	11	26.1905
TMEM252	0	genome.wustl.edu	37	9	71152337	71152338	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	9	71152337	71152338	CT	-	DEL	TMEM252	ENST00000377311	human	ensembl	74_37	-1	known	frame_shift_del	c.351_350	p.E117fs	0.001:0.001	NULL	NULL	-	no_errors	TMEM252	HGNC	ENSG00000181778				48	0	0	35	3	7.89474
VPS13A	0	genome.wustl.edu	37	9	79999547	79999548	+	In_Frame_Ins	INS	-	-	TGA			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	9	79999547	79999548	-	TGA	INS	VPS13A	ENST00000357409	human	ensembl	74_37	+1	known	in_frame_ins	c.9236_9237	p.3083in_frame_insD	1.000:0.999	NULL	pfam_VPSAP_dom,pfam_Autophagy-rel_C	-	no_errors	VPS13A	HGNC	ENSG00000197969				73	0	0	62	7	10.1449
ENSG00000234050	0	genome.wustl.edu	37	X	102193128	102193129	+	RNA	DEL	CT	CT	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	X	102193128	102193129	CT	-	DEL	ENSG00000234050	ENST00000413528	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.005:0.002	-	-	-	no_errors	LL0XNC01-237H1.3	Clone_based_vega_gene	ENSG00000234050				22	0	0	11	12	52.1739
GPC4	0	genome.wustl.edu	37	X	132439923	132439923	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	X	132439923	132439923	G	-	DEL	GPC4	ENST00000370828	human	ensembl	74_37	-1	known	frame_shift_del	c.1032	p.K345fs	0.073	pfam_Glypican	pfam_Glypican	-	no_errors	GPC4	HGNC	ENSG00000076716				210	1	0.473934	130	59	31.2169
DKC1	0	genome.wustl.edu	37	X	154005089	154005091	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	X	154005089	154005091	AAG	-	DEL	DKC1	ENST00000369550	human	ensembl	74_37	+1	known	in_frame_del	c.1492_1494	p.K501in_frame_del	0.284:0.284:0.273	NULL	pfam_Dyskerin-like,pfam_PsdUridine_synth,pfam_PUA,superfamily_PsdUridine_synth_cat_dom,superfamily_PUA-like_domain,smart_PUA,pfscan_PUA,tigrfam_tRNA_PsdUridine_synth_B_fam,tigrfam_Uncharacterised_CHP00451	-	no_errors	DKC1	HGNC	ENSG00000130826				14	0	0	6	3	33.3333
CNKSR2	0	genome.wustl.edu	37	X	21609256	21609256	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	X	21609256	21609256	A	-	DEL	CNKSR2	ENST00000379510	human	ensembl	74_37	+1	known	frame_shift_del	c.1774	p.K593fs	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_CNKSR2,pfam_CRIC_domain_Chordata,pfam_SAM_type1,pfam_Pleckstrin_homology,pfam_SAM_2,pfam_PDZ,superfamily_SAM/pointed,superfamily_PDZ,smart_SAM,smart_PDZ,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_SAM	-	no_errors	CNKSR2	HGNC	ENSG00000149970				63	0	0	16	18	52.9412
FAM155B	0	genome.wustl.edu	37	X	68725612	68725613	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-7703-01A-11D-2053-08	TCGA-BR-7703-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	12b64874-014c-4891-baf0-ad25f27d871f	2c7c8b56-3521-48af-81e5-7788523b61c8	X	68725612	68725613	-	C	INS	FAM155B	ENST00000252338	human	ensembl	74_37	+1	known	frame_shift_ins	c.487_488	p.L166fs	0.069:0.029	NULL	NULL	-	no_errors	FAM155B	HGNC	ENSG00000130054				56	0	0	24	15	38.4615
