Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
COL11A1	0	genome.wustl.edu	37	1	103449740	103449740	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	1	103449740	103449740	A	C	SNP	COL11A1	ENST00000358392	human	ensembl	74_37	-1	known	missense	c.2546	p.L849R	1.000	pfam_Collagen	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL11A1	HGNC	ENSG00000060718				28	0	0	21	11	34.375
VAV3	0	genome.wustl.edu	37	1	108322080	108322080	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	1	108322080	108322080	G	A	SNP	VAV3	ENST00000370056	human	ensembl	74_37	-1	known	missense	c.356	p.P119L	0.998	superfamily_CH-domain,pfscan_CH-domain	pfam_DH-domain,pfam_SH3_2,pfam_CAMSAP_CH,pfam_SH3_domain,pfam_SH2,pfam_CH-domain,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_CH-domain,superfamily_SH3_domain,smart_CH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_SH3_domain,smart_SH2,pfscan_CH-domain,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain,prints_SH2,prints_SH3_domain,prints_SM22_calponin	-	no_errors	VAV3	HGNC	ENSG00000134215				61	0	0	47	5	9.61538
LRIG2	0	genome.wustl.edu	37	1	113633962	113633962	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	1	113633962	113633962	T	C	SNP	LRIG2	ENST00000361127	human	ensembl	74_37	+1	known	missense	c.262	p.S88P	1.000	NULL	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Immunoglobulin,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LRIG2	HGNC	ENSG00000198799				67	0	0	36	19	34.5455
SIKE1	0	genome.wustl.edu	37	1	115323126	115323126	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	1	115323126	115323126	C	T	SNP	SIKE1	ENST00000369528	human	ensembl	74_37	-1	known	missense	c.103	p.A35T	0.980	pfam_SIKE	pfam_SIKE	-	no_errors	SIKE1	HGNC	ENSG00000052723				69	0	0	28	17	37.7778
SPAG17	0	genome.wustl.edu	37	1	118530484	118530484	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	1	118530484	118530484	C	T	SNP	SPAG17	ENST00000336338	human	ensembl	74_37	-1	known	missense	c.5642	p.R1881H	0.023	NULL	NULL	-	no_errors	SPAG17	HGNC	ENSG00000155761				40	0	0	26	7	21.2121
SEC22B	0	genome.wustl.edu	37	1	145103921	145103921	+	RNA	SNP	T	T	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	1	145103921	145103921	T	A	SNP	SEC22B	ENST00000453618	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SEC22B	HGNC	ENSG00000223380				28	0	0	24	4	14.2857
LCE2C	0	genome.wustl.edu	37	1	152648762	152648762	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	1	152648762	152648762	T	C	SNP	LCE2C	ENST00000368783	human	ensembl	74_37	+1	known	missense	c.271	p.C91R	0.224	NULL	NULL	-	no_errors	LCE2C	HGNC	ENSG00000187180				84	0	0	56	25	30.8642
PEAR1	0	genome.wustl.edu	37	1	156884531	156884531	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	1	156884531	156884531	T	A	SNP	PEAR1	ENST00000292357	human	ensembl	74_37	+1	known	missense	c.3055	p.Y1019N	1.000	NULL	pfam_EGF_laminin,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_EGF_laminin,pfscan_EG-like_dom,pfscan_EMI_domain	-	no_errors	PEAR1	HGNC	ENSG00000187800				118	0	0	65	27	29.3478
OR10K1	0	genome.wustl.edu	37	1	158435960	158435960	+	Silent	SNP	T	T	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	1	158435960	158435960	T	C	SNP	OR10K1	ENST00000289451	human	ensembl	74_37	+1	known	silent	c.609	p.G203	0.015	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10K1	HGNC	ENSG00000173285				135	1	0.735294	88	53	37.5887
LMX1A	0	genome.wustl.edu	37	1	165322361	165322361	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	1	165322361	165322361	G	T	SNP	LMX1A	ENST00000294816	human	ensembl	74_37	-1	known	missense	c.215	p.T72N	1.000	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeobox_dom,pfscan_Znf_LIM,pfscan_Homeobox_dom	-	no_errors	LMX1A	HGNC	ENSG00000162761				91	0	0	53	16	23.1884
PADI3	0	genome.wustl.edu	37	1	17609472	17609472	+	Silent	SNP	T	T	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	1	17609472	17609472	T	A	SNP	PADI3	ENST00000375460	human	ensembl	74_37	+1	known	silent	c.1893	p.I631	0.998	pfam_PAD_C,pirsf_Protein-arginine_deiminase_sub	pfam_PAD_C,pfam_Prot_Arg_deaminase_cen_dom,pfam_PAD_N,superfamily_Prot_Arg_deaminase_cen_dom,superfamily_Cupredoxin,pirsf_Protein-arginine_deiminase_sub	-	no_errors	PADI3	HGNC	ENSG00000142619				45	0	0	32	10	23.8095
CACNA1E	0	genome.wustl.edu	37	1	181764122	181764122	+	Silent	SNP	T	T	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	1	181764122	181764122	T	A	SNP	CACNA1E	ENST00000367573	human	ensembl	74_37	+1	known	silent	c.6150	p.R2050	0.000	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_hand_dom,prints_VDCCAlpha1,prints_VDCC_R_a1su	-	no_errors	CACNA1E	HGNC	ENSG00000198216				69	0	0	42	19	31.1475
NAV1	0	genome.wustl.edu	37	1	201779757	201779757	+	Silent	SNP	C	C	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	1	201779757	201779757	C	A	SNP	NAV1	ENST00000367296	human	ensembl	74_37	+1	known	silent	c.4668	p.L1556	1.000	superfamily_P-loop_NTPase,smart_AAA+_ATPase	superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	NAV1	HGNC	ENSG00000134369				30	0	0	26	11	29.7297
UBXN10	0	genome.wustl.edu	37	1	20517104	20517104	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	1	20517104	20517104	T	C	SNP	UBXN10	ENST00000375099	human	ensembl	74_37	+1	known	missense	c.50	p.V17A	0.000	NULL	pfam_UBX,smart_UBX,pfscan_UBX	-	no_errors	UBXN10	HGNC	ENSG00000162543				86	0	0	50	20	28.5714
USH2A	0	genome.wustl.edu	37	1	216498893	216498893	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	1	216498893	216498893	T	A	SNP	USH2A	ENST00000366943	human	ensembl	74_37	-1	known	missense	c.897	p.Q299H	1.000	smart_Laminin_N,pfscan_Laminin_N	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781				60	0	0	24	20	45.4545
HSPG2	0	genome.wustl.edu	37	1	22181166	22181166	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	1	22181166	22181166	C	T	SNP	HSPG2	ENST00000374695	human	ensembl	74_37	-1	known	missense	c.6226	p.G2076R	0.916	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Laminin_G,pfam_Laminin_B_type_IV,pfam_EGF_laminin,pfam_LDrepeatLR_classA_rpt,pfam_EG-like_dom,superfamily_ConA-like_lec_gl_sf,superfamily_LDrepeatLR_classA_rpt,smart_SEA_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Laminin_B_subgr,smart_EGF_laminin,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_LDrepeatLR_classA_rpt,pfscan_SEA_dom,pfscan_Ig-like_dom,prints_LDrepeatLR_classA_rpt	-	no_errors	HSPG2	HGNC	ENSG00000142798				19	0	0	9	7	43.75
ACBD3	0	genome.wustl.edu	37	1	226342426	226342426	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	1	226342426	226342426	C	T	SNP	ACBD3	ENST00000366812	human	ensembl	74_37	-1	known	missense	c.1012	p.A338T	1.000	NULL	pfam_Acyl-CoA-binding_protein,superfamily_GOLD,superfamily_Acyl-CoA-binding_protein,pfscan_GOLD	-	no_errors	ACBD3	HGNC	ENSG00000182827				64	0	0	38	18	32.1429
OBSCN	0	genome.wustl.edu	37	1	228525812	228525812	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	1	228525812	228525812	G	T	SNP	OBSCN	ENST00000422127	human	ensembl	74_37	+1	known	missense	c.16968	p.W5656C	1.000	superfamily_DH-domain,superfamily_SH3_domain	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358				30	0	0	10	6	37.5
GNPAT	0	genome.wustl.edu	37	1	231403644	231403644	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	1	231403644	231403644	G	C	SNP	GNPAT	ENST00000366647	human	ensembl	74_37	+1	known	missense	c.1274	p.W425S	1.000	NULL	pfam_Plipid/glycerol_acylTrfase,smart_Plipid/glycerol_acylTrfase	-	no_errors	GNPAT	HGNC	ENSG00000116906				34	0	0	12	10	45.4545
RYR2	0	genome.wustl.edu	37	1	237813237	237813237	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	1	237813237	237813237	T	G	SNP	RYR2	ENST00000360064	human	ensembl	74_37	+1	known	missense	c.7567	p.L2523V	0.678	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626				154	0	0	99	40	28.777
RYR2	0	genome.wustl.edu	37	1	237947520	237947520	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	1	237947520	237947520	A	G	SNP	RYR2	ENST00000360064	human	ensembl	74_37	+1	known	missense	c.12526	p.R4176G	0.870	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626				122	0	0	82	28	25.4545
MYOM3	0	genome.wustl.edu	37	1	24407915	24407915	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	1	24407915	24407915	T	A	SNP	MYOM3	ENST00000330966	human	ensembl	74_37	-1	known	missense	c.2315	p.E772V	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	MYOM3	HGNC	ENSG00000142661				44	0	0	29	19	39.5833
C1orf101	0	genome.wustl.edu	37	1	244716101	244716101	+	Silent	SNP	C	C	G			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	1	244716101	244716101	C	G	SNP	C1orf101	ENST00000366531	human	ensembl	74_37	+1	known	silent	c.561	p.V187	0.000	NULL	NULL	-	no_errors	C1orf101	HGNC	ENSG00000179397				60	0	0	46	14	23.3333
NLRP3	0	genome.wustl.edu	37	1	247608050	247608050	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	1	247608050	247608050	G	C	SNP	NLRP3	ENST00000336119	human	ensembl	74_37	+1	known	missense	c.2938	p.D980H	0.900	smart_Leu-rich_rpt_RNase_inh_sub-typ	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP3	HGNC	ENSG00000162711				49	0	0	26	13	33.3333
OR2G3	0	genome.wustl.edu	37	1	247769370	247769370	+	Silent	SNP	T	T	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	1	247769370	247769370	T	C	SNP	OR2G3	ENST00000320002	human	ensembl	74_37	+1	known	silent	c.483	p.T161	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2G3	HGNC	ENSG00000177476				80	0	0	57	32	35.9551
OR2T4	0	genome.wustl.edu	37	1	248524929	248524929	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	1	248524929	248524929	T	C	SNP	OR2T4	ENST00000366475	human	ensembl	74_37	+1	known	missense	c.47	p.F16S	0.138	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2T4	HGNC	ENSG00000196944				63	0	0	26	22	45.8333
SRRM1	0	genome.wustl.edu	37	1	24996643	24996643	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	1	24996643	24996643	G	C	SNP	SRRM1	ENST00000447431	human	ensembl	74_37	+1	known	missense	c.2273	p.R758T	1.000	NULL	pfam_PWI_dom,superfamily_PWI_dom,smart_PWI_dom	-	no_errors	SRRM1	HGNC	ENSG00000133226				157	0	0	111	44	28.3871
ZNF362	0	genome.wustl.edu	37	1	33760823	33760823	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	1	33760823	33760823	T	A	SNP	ZNF362	ENST00000373428	human	ensembl	74_37	+1	known	missense	c.1063	p.S355T	0.997	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF362	HGNC	ENSG00000160094				82	0	0	51	23	31.0811
CSMD2	0	genome.wustl.edu	37	1	34192262	34192262	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	1	34192262	34192262	G	A	SNP	CSMD2	ENST00000373381	human	ensembl	74_37	-1	known	missense	c.2393	p.S798L	1.000	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD2	HGNC	ENSG00000121904				47	0	0	31	10	24.3902
CTPS1	0	genome.wustl.edu	37	1	41475181	41475181	+	Silent	SNP	C	C	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	1	41475181	41475181	C	A	SNP	CTPS1	ENST00000372616	human	ensembl	74_37	+1	known	silent	c.1611	p.S537	0.596	pfam_GATASE,tigrfam_CTP_synthase	pfam_CTP_synthase_N,pfam_GATASE,pfam_Peptidase_C26,superfamily_P-loop_NTPase,tigrfam_CTP_synthase	-	no_errors	CTPS1	HGNC	ENSG00000171793				105	0	0	86	7	7.52688
MPL	0	genome.wustl.edu	37	1	43805796	43805796	+	Silent	SNP	A	A	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	1	43805796	43805796	A	C	SNP	MPL	ENST00000372470	human	ensembl	74_37	+1	known	silent	c.852	p.A284	1.000	superfamily_Fibronectin_type3	pfam_Growth/epo_recpt_lig-bind,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	MPL	HGNC	ENSG00000117400				19	0	0	7	7	50
PTCH2	0	genome.wustl.edu	37	1	45292299	45292299	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	1	45292299	45292299	G	C	SNP	PTCH2	ENST00000372192	human	ensembl	74_37	-1	known	missense	c.2837	p.P946R	1.000	pfam_Patched,tigrfam_TM_rcpt_patched	pfam_Patched,pfscan_SSD,tigrfam_TM_rcpt_patched	-	no_errors	PTCH2	HGNC	ENSG00000117425				36	0	0	18	4	18.1818
ZFYVE9	0	genome.wustl.edu	37	1	52704195	52704195	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	1	52704195	52704195	C	T	SNP	ZFYVE9	ENST00000287727	human	ensembl	74_37	+1	known	missense	c.1106	p.A369V	0.913	pirsf_Znf_FYVE_SARA/endofin	pfam_DUF3480,pfam_SARA_Smad-bd,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pirsf_Znf_FYVE_SARA/endofin,pfscan_Znf_FYVE-rel	-	no_errors	ZFYVE9	HGNC	ENSG00000157077				111	0	0	63	5	7.35294
CLCA1	0	genome.wustl.edu	37	1	86964455	86964455	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	1	86964455	86964455	A	T	SNP	CLCA1	ENST00000234701	human	ensembl	74_37	+1	known	missense	c.2314	p.T772S	1.000	superfamily_Fibronectin_type3,tigrfam_CaCC_prot	pfam_Cl_channel_Ca,pfam_DUF1973,pfam_VWF_A,superfamily_Fibronectin_type3,smart_VWF_A,pfscan_VWF_A,tigrfam_CaCC_prot	-	no_errors	CLCA1	HGNC	ENSG00000016490				97	0	0	70	30	30
CLCA4	0	genome.wustl.edu	37	1	87025894	87025894	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	1	87025894	87025894	G	T	SNP	CLCA4	ENST00000370563	human	ensembl	74_37	+1	known	missense	c.301	p.A101S	1.000	pfam_Cl_channel_Ca,tigrfam_CaCC_prot	pfam_Cl_channel_Ca,pfam_DUF1973,pfam_VWF_A,superfamily_Fibronectin_type3,smart_VWF_A,pfscan_VWF_A,tigrfam_CaCC_prot	-	no_errors	CLCA4	HGNC	ENSG00000016602				68	0	0	33	10	23.2558
AGRN	0	genome.wustl.edu	37	1	957708	957708	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	1	957708	957708	G	C	SNP	AGRN	ENST00000379370	human	ensembl	74_37	+1	known	missense	c.329	p.G110A	1.000	pfam_Agrin_NtA,superfamily_TIMP-like_OB-fold,pfscan_Agrin_NtA	pfam_Laminin_G,pfam_Agrin_NtA,pfam_Kazal_dom,pfam_EGF_laminin,pfam_SEA_dom,pfam_EG-like_dom,superfamily_TIMP-like_OB-fold,superfamily_ConA-like_lec_gl_sf,smart_FacI_MAC,smart_Fol_N,smart_Kazal_dom,smart_EG-like_dom,smart_EGF_laminin,smart_SEA_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Agrin_NtA,pfscan_SEA_dom	-	no_errors	AGRN	HGNC	ENSG00000188157				158	0	0	121	9	6.92308
PIK3CD	0	genome.wustl.edu	37	1	9770531	9770531	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	1	9770531	9770531	C	A	SNP	PIK3CD	ENST00000536656	human	ensembl	74_37	+1	known	missense	c.18	p.D6E	1.000	NULL	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,pfam_PI3K_Ras-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CD	HGNC	ENSG00000171608				186	0	0	98	41	29.4964
DPYD	0	genome.wustl.edu	37	1	97770822	97770822	+	Silent	SNP	T	T	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	1	97770822	97770822	T	A	SNP	DPYD	ENST00000370192	human	ensembl	74_37	-1	known	silent	c.2292	p.G764	0.790	pfam_Dihydroorotate_DH_1_2,tigrfam_Dihydroorotate_DH	pfam_Dihydroorotate_DH_1_2,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_tRNA_hU_synthase,superfamily_Helical_ferredxn,prints_FAD_pyr_nucl-diS_OxRdtase,tigrfam_Dihydroorotate_DH	-	no_errors	DPYD	HGNC	ENSG00000188641				112	0	0	77	43	35.8333
LPPR5	0	genome.wustl.edu	37	1	99358629	99358629	+	Nonstop_Mutation	SNP	C	C	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	1	99358629	99358629	C	A	SNP	LPPR5	ENST00000263177	human	ensembl	74_37	-1	known	nonstop	c.965	p.*322L	1.000	NULL	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	-	no_errors	LPPR5	Uniprot_gn	ENSG00000117598				42	0	0	34	20	37.037
ATRNL1	0	genome.wustl.edu	37	10	117226739	117226739	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	10	117226739	117226739	T	G	SNP	ATRNL1	ENST00000355044	human	ensembl	74_37	+1	known	missense	c.3473	p.I1158S	1.000	NULL	pfam_Kelch_1,pfam_Kelch_2,pfam_Plexin_repeat,pfam_CUB_dom,pfam_EGF_extracell,superfamily_C-type_lectin_fold,superfamily_CUB_dom,superfamily_Plexin-like_fold,smart_EG-like_dom,smart_CUB_dom,smart_Plexin-like_fold,smart_C-type_lectin,smart_EGF_laminin,pfscan_CUB_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_C-type_lectin	-	no_errors	ATRNL1	HGNC	ENSG00000107518				41	0	0	55	19	25.6757
DMBT1	0	genome.wustl.edu	37	10	124379796	124379796	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	10	124379796	124379796	C	T	SNP	DMBT1	ENST00000338354	human	ensembl	74_37	+1	known	missense	c.4886	p.A1629V	0.000	NULL	pfam_SRCR,pfam_CUB_dom,pfam_ZP_dom,superfamily_Srcr_rcpt-rel,superfamily_CUB_dom,smart_Srcr_rcpt-rel,smart_CUB_dom,smart_ZP_dom,pfscan_CUB_dom,pfscan_SRCR,pfscan_ZP_dom,prints_SRCR	-	no_errors	DMBT1	HGNC	ENSG00000187908				80	0	0	52	35	40.2299
EBF3	0	genome.wustl.edu	37	10	131639180	131639180	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	10	131639180	131639180	C	T	SNP	EBF3	ENST00000355311	human	ensembl	74_37	-1	known	missense	c.1489	p.A497T	1.000	NULL	pfam_IPT,superfamily_Ig_E-set,smart_IPT	-	no_errors	EBF3	HGNC	ENSG00000108001				177	0	0	154	47	23.3831
PTER	0	genome.wustl.edu	37	10	16553244	16553244	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	10	16553244	16553244	A	C	SNP	PTER	ENST00000298942	human	ensembl	74_37	+1	known	missense	c.1039	p.T347P	0.998	pfam_Aryldialkylphosphatase	pfam_Aryldialkylphosphatase,pfam_TatD_family	-	no_errors	PTER	HGNC	ENSG00000165983				99	0	0	91	29	24.1667
STAM	0	genome.wustl.edu	37	10	17702492	17702492	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	10	17702492	17702492	G	A	SNP	STAM	ENST00000377524	human	ensembl	74_37	+1	known	missense	c.70	p.E24K	1.000	pfam_VHS,superfamily_ENTH_VHS,smart_VHS_subgr,pfscan_VHS	pfam_VHS,pfam_SH3_domain,pfam_SH3_2,pfam_Ubiquitin-int_motif,superfamily_ENTH_VHS,superfamily_SH3_domain,smart_VHS_subgr,smart_SH3_domain,pfscan_SH3_domain,pfscan_Ubiquitin-int_motif,pfscan_VHS,prints_SH3_domain,prints_p67phox	-	no_errors	STAM	HGNC	ENSG00000136738				99	0	0	68	66	49.2537
KIAA1217	0	genome.wustl.edu	37	10	24833163	24833163	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	10	24833163	24833163	C	T	SNP	KIAA1217	ENST00000376454	human	ensembl	74_37	+1	known	missense	c.4964	p.T1655I	1.000	NULL	pfam_AIP3_C	-	no_errors	KIAA1217	HGNC	ENSG00000120549				62	0	0	47	9	16.0714
FRMPD2	0	genome.wustl.edu	37	10	49431234	49431234	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	10	49431234	49431234	C	A	SNP	FRMPD2	ENST00000374201	human	ensembl	74_37	-1	known	missense	c.1248	p.K416N	0.952	pfam_FERM_N,smart_Band_41_domain,pfscan_FERM_domain	pfam_PDZ,pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_PDZ,superfamily_FERM_central,superfamily_Kinase-like_dom,smart_KIND,smart_Band_41_domain,smart_PDZ,pfscan_FERM_domain,pfscan_PDZ,prints_Band_41_fam	-	no_errors	FRMPD2	HGNC	ENSG00000170324				74	0	0	37	59	61.4583
VSTM4	0	genome.wustl.edu	37	10	50255037	50255037	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	10	50255037	50255037	T	A	SNP	VSTM4	ENST00000332853	human	ensembl	74_37	-1	known	missense	c.828	p.K276N	0.999	NULL	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	VSTM4	HGNC	ENSG00000165633				234	0	0	198	71	26.3941
OGDHL	0	genome.wustl.edu	37	10	50955074	50955074	+	Splice_Site	SNP	C	C	G			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	10	50955074	50955074	C	G	SNP	OGDHL	ENST00000374103	human	ensembl	74_37	-1	known	splice_site	c.1167+1	e8+1	1.000	-	-	-	no_errors	OGDHL	HGNC	ENSG00000197444				66	0	0	37	36	49.3151
CTNNA3	0	genome.wustl.edu	37	10	68940188	68940188	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	10	68940188	68940188	C	A	SNP	CTNNA3	ENST00000373744	human	ensembl	74_37	-1	known	missense	c.934	p.A312S	1.000	pfam_Vinculin/catenin,prints_Alpha_catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin,prints_Vinculin	-	no_errors	CTNNA3	HGNC	ENSG00000183230				80	0	0	40	28	41.1765
KCNMA1	0	genome.wustl.edu	37	10	78651324	78651324	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	10	78651324	78651324	C	A	SNP	KCNMA1	ENST00000406533	human	ensembl	74_37	-1	known	missense	c.3313	p.A1105S	1.000	NULL	pfam_K_chnl_Ca-activ_BK_asu,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,pfam_RCK_N,prints_K_chnl_Ca-activ_BK_asu,prints_K_chnl	-	no_errors	KCNMA1	HGNC	ENSG00000156113				46	0	0	22	17	43.5897
EIF5AL1	0	genome.wustl.edu	37	10	81272683	81272683	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	10	81272683	81272683	G	T	SNP	EIF5AL1	ENST00000520547	human	ensembl	74_37	+1	known	missense	c.278	p.G93V	0.992	pfam_Transl_elong_IF5A_C,superfamily_NA-bd_OB-fold,pirsf_Transl_elong_IF5A,tigrfam_Transl_elong_IF5A	pfam_Transl_elong_IF5A_C,superfamily_Translation_prot_SH3-like,superfamily_NA-bd_OB-fold,pirsf_Transl_elong_IF5A,tigrfam_Transl_elong_IF5A	-	no_errors	EIF5AL1	HGNC	ENSG00000253626				57	0	0	18	35	66.0377
FAM35A	0	genome.wustl.edu	37	10	88911205	88911205	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	10	88911205	88911205	G	T	SNP	FAM35A	ENST00000298786	human	ensembl	74_37	+1	known	missense	c.94	p.V32F	0.000	NULL	NULL	-	no_errors	FAM35A	HGNC	ENSG00000122376				36	0	0	13	5	27.7778
PTEN	0	genome.wustl.edu	37	10	89692993	89692993	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	10	89692993	89692993	G	T	SNP	PTEN	ENST00000371953	human	ensembl	74_37	+1	known	missense	c.477	p.R159S	1.000	pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_C2_dom,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	PTEN	HGNC	ENSG00000171862				52	0	0	23	17	42.5
CNTN5	0	genome.wustl.edu	37	11	100168424	100168424	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	11	100168424	100168424	G	A	SNP	CNTN5	ENST00000279463	human	ensembl	74_37	+1	known	nonsense	c.2382	p.W794*	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CNTN5	HGNC	ENSG00000149972				18	0	0	19	4	17.3913
SIK3	0	genome.wustl.edu	37	11	116827717	116827717	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	11	116827717	116827717	C	T	SNP	SIK3	ENST00000375300	human	ensembl	74_37	-1	known	missense	c.337	p.E113K	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom	-	no_errors	SIK3	HGNC	ENSG00000160584				226	0	0	199	73	26.8382
CBL	0	genome.wustl.edu	37	11	119145617	119145617	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	11	119145617	119145617	G	C	SNP	CBL	ENST00000264033	human	ensembl	74_37	+1	known	missense	c.823	p.D275H	1.000	pfam_Adaptor_Cbl_SH2-like	pfam_Adaptor_Cbl_N_hlx,pfam_Adaptor_Cbl_SH2-like,pfam_Adaptor_Cbl_EF_hand-like,pfam_Znf_C3HC4_RING-type,pfam_UBA/Ts_N,superfamily_Adaptor_Cbl_N_hlx,superfamily_UBA-like,smart_Znf_RING,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_RING	-	no_errors	CBL	HGNC	ENSG00000110395				91	0	0	116	7	5.69106
DKK3	0	genome.wustl.edu	37	11	12023884	12023884	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	11	12023884	12023884	C	G	SNP	DKK3	ENST00000326932	human	ensembl	74_37	-1	known	missense	c.314	p.G105A	1.000	NULL	pfam_Dickkopf_N	-	no_errors	DKK3	HGNC	ENSG00000050165				67	0	0	17	37	68.5185
UBASH3B	0	genome.wustl.edu	37	11	122650272	122650272	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	11	122650272	122650272	A	C	SNP	UBASH3B	ENST00000284273	human	ensembl	74_37	+1	known	missense	c.470	p.K157T	1.000	superfamily_RNA_ligase/cNuc_Pdiesterase	pfam_His_Pase_superF_clade-1,pfam_SH3_domain,pfam_UBA/Ts_N,superfamily_UBA-like,superfamily_SH3_domain,superfamily_RNA_ligase/cNuc_Pdiesterase,smart_UBA/transl_elong_EF1B_N_euk,smart_SH3_domain,pfscan_SH3_domain,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	UBASH3B	HGNC	ENSG00000154127				71	0	0	71	20	21.978
VWA5A	0	genome.wustl.edu	37	11	124007906	124007906	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	11	124007906	124007906	G	T	SNP	VWA5A	ENST00000392748	human	ensembl	74_37	+1	known	missense	c.1810	p.A604S	0.000	NULL	pfam_VIT,pfam_VWF_A,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	VWA5A	HGNC	ENSG00000110002				54	0	0	73	14	16.092
OR8D1	0	genome.wustl.edu	37	11	124180067	124180067	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	11	124180067	124180067	A	C	SNP	OR8D1	ENST00000357821	human	ensembl	74_37	-1	known	missense	c.596	p.L199R	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8D1	HGNC	ENSG00000196341				30	0	0	41	16	28.0702
ARHGAP32	0	genome.wustl.edu	37	11	128844888	128844888	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	11	128844888	128844888	T	C	SNP	ARHGAP32	ENST00000310343	human	ensembl	74_37	-1	known	missense	c.2162	p.K721R	1.000	NULL	pfam_RhoGAP_dom,pfam_SH3_domain,pfam_SH3_2,pfam_Phox,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Phox,smart_SH3_domain,smart_RhoGAP_dom,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	ARHGAP32	HGNC	ENSG00000134909				89	0	0	78	26	25
NAV2	0	genome.wustl.edu	37	11	19961238	19961238	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	11	19961238	19961238	G	T	SNP	NAV2	ENST00000396087	human	ensembl	74_37	+1	known	missense	c.2134	p.A712S	0.990	NULL	pfam_CH-domain,superfamily_CH-domain,superfamily_P-loop_NTPase,smart_CH-domain,smart_AAA+_ATPase,pfscan_CH-domain	-	no_errors	NAV2	HGNC	ENSG00000166833				86	0	0	51	7	12.069
ANO5	0	genome.wustl.edu	37	11	22232833	22232833	+	Silent	SNP	C	C	G			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	11	22232833	22232833	C	G	SNP	ANO5	ENST00000324559	human	ensembl	74_37	+1	known	silent	c.111	p.T37	0.992	NULL	pfam_Anoctamin	-	no_errors	ANO5	HGNC	ENSG00000171714				140	0	0	99	38	27.7372
ANO3	0	genome.wustl.edu	37	11	26655759	26655759	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	11	26655759	26655759	C	T	SNP	ANO3	ENST00000256737	human	ensembl	74_37	+1	known	nonsense	c.1882	p.R628*	1.000	pfam_Anoctamin	pfam_Anoctamin	-	no_errors	ANO3	HGNC	ENSG00000134343				43	0	0	43	10	18.8679
DCDC1	0	genome.wustl.edu	37	11	31086675	31086675	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	11	31086675	31086675	T	C	SNP	DCDC1	ENST00000597505	human	ensembl	74_37	-1	putative	missense	c.2324	p.Y775C	1.000	superfamily_Ricin_B_lectin,pfscan_Ricin_B_lectin	pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Doublecortin_dom,pfscan_Doublecortin_dom,pfscan_Ricin_B_lectin	-	no_errors	DCDC1	HGNC	ENSG00000170959				48	0	0	17	30	63.8298
DEPDC7	0	genome.wustl.edu	37	11	33054236	33054236	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	11	33054236	33054236	A	G	SNP	DEPDC7	ENST00000241051	human	ensembl	74_37	+1	known	missense	c.1160	p.K387R	1.000	NULL	pfam_DEP_dom,smart_DEP_dom,pfscan_DEP_dom	-	no_errors	DEPDC7	HGNC	ENSG00000121690				39	0	0	42	3	6.66667
PAMR1	0	genome.wustl.edu	37	11	35457534	35457534	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	11	35457534	35457534	G	T	SNP	PAMR1	ENST00000278360	human	ensembl	74_37	-1	known	missense	c.1301	p.P434H	1.000	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Peptidase_S1,pfam_CUB_dom,pfam_Sushi_SCR_CCP,pfam_EG-like_dom,superfamily_Trypsin-like_Pept_dom,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_EG-like_dom,smart_CUB_dom,smart_EGF-like_Ca-bd_dom,smart_Sushi_SCR_CCP,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_CUB_dom,pfscan_EG-like_dom,pfscan_Sushi_SCR_CCP,pfscan_Peptidase_S1	-	no_errors	PAMR1	HGNC	ENSG00000149090				184	0	0	101	53	34.4156
COMMD9	0	genome.wustl.edu	37	11	36300048	36300048	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	11	36300048	36300048	G	T	SNP	COMMD9	ENST00000263401	human	ensembl	74_37	-1	known	missense	c.296	p.T99K	1.000	pfam_HCaRG	pfam_HCaRG	-	no_errors	COMMD9	HGNC	ENSG00000110442				104	0	0	31	49	61.25
ALKBH3	0	genome.wustl.edu	37	11	43904723	43904723	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	11	43904723	43904723	C	G	SNP	ALKBH3	ENST00000302708	human	ensembl	74_37	+1	known	missense	c.168	p.F56L	0.990	NULL	pfam_Oxoglu/Fe-dep_dioxygenase	-	no_errors	ALKBH3	HGNC	ENSG00000166199				26	0	0	12	13	52
MADD	0	genome.wustl.edu	37	11	47330873	47330873	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	11	47330873	47330873	G	A	SNP	MADD	ENST00000311027	human	ensembl	74_37	+1	known	missense	c.3973	p.E1325K	1.000	NULL	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	MADD	HGNC	ENSG00000110514				82	0	0	45	33	42.3077
RNH1	0	genome.wustl.edu	37	11	499100	499100	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	11	499100	499100	C	T	SNP	RNH1	ENST00000354420	human	ensembl	74_37	-1	known	missense	c.529	p.V177I	0.002	smart_Leu-rich_rpt_RNase_inh_sub-typ	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_RNase_inh_sub-typ,smart_Leu-rich_rpt_Cys-con_subtyp	-	no_errors	RNH1	HGNC	ENSG00000023191				43	0	0	15	14	48.2759
OR4C46	0	genome.wustl.edu	37	11	51516067	51516067	+	Silent	SNP	T	T	G			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	11	51516067	51516067	T	G	SNP	OR4C46	ENST00000328188	human	ensembl	74_37	+1	known	silent	c.786	p.T262	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4C46	HGNC	ENSG00000185926				64	0	0	50	48	48.9796
OR10AG1	0	genome.wustl.edu	37	11	55735739	55735739	+	Silent	SNP	G	G	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	11	55735739	55735739	G	A	SNP	OR10AG1	ENST00000312345	human	ensembl	74_37	-1	known	silent	c.201	p.I67	0.001	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10AG1	HGNC	ENSG00000174970				76	0	0	81	24	22.8571
OR5T2	0	genome.wustl.edu	37	11	55999993	55999993	+	Silent	SNP	G	G	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	11	55999993	55999993	G	A	SNP	OR5T2	ENST00000313264	human	ensembl	74_37	-1	known	silent	c.669	p.L223	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5T2	HGNC	ENSG00000181718				141	0	0	98	69	41.3174
MS4A14	0	genome.wustl.edu	37	11	60184453	60184453	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	11	60184453	60184453	T	G	SNP	MS4A14	ENST00000300187	human	ensembl	74_37	+1	known	missense	c.2012	p.L671R	0.000	NULL	pfam_CD20-like	-	no_errors	MS4A14	HGNC	ENSG00000166928				77	0	0	78	20	20.4082
NRXN2	0	genome.wustl.edu	37	11	64428403	64428403	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	11	64428403	64428403	G	T	SNP	NRXN2	ENST00000265459	human	ensembl	74_37	-1	known	missense	c.2007	p.D669E	0.995	superfamily_ConA-like_lec_gl_sf,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN2	HGNC	ENSG00000110076				23	0	0	17	19	52.7778
SF1	0	genome.wustl.edu	37	11	64533411	64533411	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	11	64533411	64533411	G	C	SNP	SF1	ENST00000377390	human	ensembl	74_37	-1	known	missense	c.1799	p.P600R	1.000	NULL	pfam_KH_dom_type_1,pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_KH_dom,smart_Znf_CCHC,pfscan_Znf_CCHC,pfscan_KH_dom_type_1	-	no_errors	SF1	HGNC	ENSG00000168066				9	0	0	6	10	62.5
C11orf85	0	genome.wustl.edu	37	11	64717264	64717264	+	Silent	SNP	A	A	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	11	64717264	64717264	A	T	SNP	C11orf85	ENST00000301896	human	ensembl	74_37	-1	known	silent	c.300	p.V100	1.000	NULL	NULL	-	no_errors	C11orf85	HGNC	ENSG00000168070				98	0	0	85	56	39.7163
DPF2	0	genome.wustl.edu	37	11	65113830	65113830	+	Silent	SNP	C	C	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	11	65113830	65113830	C	T	SNP	DPF2	ENST00000528416	human	ensembl	74_37	+1	known	silent	c.1017	p.D339	0.997	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_C2H2-like,smart_Znf_PHD,pfscan_Znf_PHD-finger,pfscan_Znf_C2H2	-	no_errors	DPF2	HGNC	ENSG00000133884				58	0	0	29	30	50.8475
NPAS4	0	genome.wustl.edu	37	11	66191589	66191589	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	11	66191589	66191589	C	T	SNP	NPAS4	ENST00000311034	human	ensembl	74_37	+1	known	missense	c.1228	p.P410S	0.999	NULL	pfam_PAS_fold_3,superfamily_PAS,smart_PAS,pfscan_PAS	-	no_errors	NPAS4	HGNC	ENSG00000174576				106	0	0	70	60	46.1538
TPP1	0	genome.wustl.edu	37	11	6638035	6638035	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	11	6638035	6638035	C	A	SNP	TPP1	ENST00000299427	human	ensembl	74_37	-1	known	missense	c.743	p.G248V	0.999	superfamily_Peptidase_S8/S53_dom	pfam_Peptidase_S53_propep,pfam_Peptidase_S8/S53_dom,superfamily_Peptidase_S8/S53_dom,superfamily_Prot_inh_propept,smart_Peptidase_S53_propep	-	no_errors	TPP1	HGNC	ENSG00000166340				219	0	0	106	46	30.2632
DCHS1	0	genome.wustl.edu	37	11	6653650	6653650	+	Silent	SNP	A	A	G			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	11	6653650	6653650	A	G	SNP	DCHS1	ENST00000299441	human	ensembl	74_37	-1	known	silent	c.3093	p.P1031	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	DCHS1	HGNC	ENSG00000166341				33	0	0	9	16	64
RPS6KB2	0	genome.wustl.edu	37	11	67200659	67200659	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	11	67200659	67200659	C	T	SNP	RPS6KB2	ENST00000312629	human	ensembl	74_37	+1	known	missense	c.770	p.A257V	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ribosomal_S6_kinase,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase,pfscan_Prot_kinase_dom	-	no_errors	RPS6KB2	HGNC	ENSG00000175634				10	0	0	3	4	57.1429
MTL5	0	genome.wustl.edu	37	11	68475825	68475825	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	11	68475825	68475825	G	T	SNP	MTL5	ENST00000255087	human	ensembl	74_37	-1	known	nonsense	c.1478	p.S493*	0.090	NULL	pfam_CRC,superfamily_Thionin	-	no_errors	MTL5	HGNC	ENSG00000132749				146	0	0	125	46	26.9006
C11orf30	0	genome.wustl.edu	37	11	76234316	76234316	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	11	76234316	76234316	C	A	SNP	C11orf30	ENST00000334736	human	ensembl	74_37	+1	known	missense	c.1802	p.T601K	1.000	NULL	pfam_ENT_N,pfscan_ENT_N	-	no_errors	C11orf30	HGNC	ENSG00000158636				35	0	0	45	12	21.0526
MTMR2	0	genome.wustl.edu	37	11	95569393	95569393	+	Silent	SNP	G	G	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	11	95569393	95569393	G	T	SNP	MTMR2	ENST00000346299	human	ensembl	74_37	-1	known	silent	c.1689	p.V563	1.000	NULL	pfam_Myotubularin-like_Pase_dom,pfam_GRAM,smart_GRAM,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase	-	no_errors	MTMR2	HGNC	ENSG00000087053				112	0	0	78	65	45.4545
KLRC3	0	genome.wustl.edu	37	12	10568373	10568373	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	12	10568373	10568373	G	C	SNP	KLRC3	ENST00000381903	human	ensembl	74_37	-1	known	missense	c.608	p.A203G	0.000	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,pfam_Herpes_UL45-like,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	KLRC3	HGNC	ENSG00000205810				70	0	0	54	5	8.47458
MED13L	0	genome.wustl.edu	37	12	116434872	116434872	+	Silent	SNP	T	T	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	12	116434872	116434872	T	C	SNP	MED13L	ENST00000281928	human	ensembl	74_37	-1	known	silent	c.2733	p.T911	0.655	NULL	pfam_Mediator_Med13,pfam_Mediator_Med13_N_met/fun	-	no_errors	MED13L	HGNC	ENSG00000123066				213	0	0	123	71	36.5979
SLCO1B7	0	genome.wustl.edu	37	12	21172239	21172239	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	12	21172239	21172239	A	C	SNP	SLCO1B7	ENST00000421593	human	ensembl	74_37	+1	known	missense	c.143	p.K48T	0.227	pfam_OA_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal_dom,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO1B7	HGNC	ENSG00000205754				47	0	0	36	11	23.4043
ABCC9	0	genome.wustl.edu	37	12	21997442	21997442	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	12	21997442	21997442	G	A	SNP	ABCC9	ENST00000261200	human	ensembl	74_37	-1	known	missense	c.3290	p.S1097L	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,prints_Sulphorea_rcpt,prints_Sulphonylurea_rcpt-2	-	no_errors	ABCC9	HGNC	ENSG00000069431				123	0	0	43	72	62.6087
LRRK2	0	genome.wustl.edu	37	12	40753186	40753186	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	12	40753186	40753186	T	C	SNP	LRRK2	ENST00000298910	human	ensembl	74_37	+1	known	missense	c.6968	p.I2323T	0.994	superfamily_WD40_repeat_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_MIRO-like,pfam_Small_GTPase,pfam_Leu-rich_rpt,pfam_Small_GTPase_ARF/SAR,superfamily_Kinase-like_dom,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,superfamily_WD40_repeat_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Small_GTPase_Rab_type,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,prints_Small_GTPase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	LRRK2	HGNC	ENSG00000188906				86	0	0	27	44	61.9718
ARID2	0	genome.wustl.edu	37	12	46298716	46298716	+	Splice_Site	SNP	G	G	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	12	46298716	46298716	G	C	SNP	ARID2	ENST00000334344	human	ensembl	74_37	+1	known	splice_site	c.5364-1	e21-1	1.000	-	-	-	no_errors	ARID2	HGNC	ENSG00000189079				27	0	0	19	21	52.5
KRT2	0	genome.wustl.edu	37	12	53044145	53044145	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	12	53044145	53044145	G	T	SNP	KRT2	ENST00000309680	human	ensembl	74_37	-1	known	missense	c.778	p.L260I	0.999	pfam_IF,prints_Keratin_II	pfam_IF,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT2	HGNC	ENSG00000172867				180	0	0	102	38	27.1429
ITGA5	0	genome.wustl.edu	37	12	54803127	54803127	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	12	54803127	54803127	G	A	SNP	ITGA5	ENST00000293379	human	ensembl	74_37	-1	known	missense	c.472	p.P158S	1.000	NULL	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA5	HGNC	ENSG00000161638				21	0	0	10	7	41.1765
PDE1B	0	genome.wustl.edu	37	12	54967231	54967231	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	12	54967231	54967231	A	T	SNP	PDE1B	ENST00000243052	human	ensembl	74_37	+1	known	missense	c.929	p.N310I	1.000	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom	pfam_PDEase_catalytic_dom,pfam_PDEase_N,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE1B	HGNC	ENSG00000123360				82	0	0	31	44	58.6667
PPP1R1A	0	genome.wustl.edu	37	12	54975775	54975775	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	12	54975775	54975775	A	T	SNP	PPP1R1A	ENST00000257905	human	ensembl	74_37	-1	known	missense	c.388	p.S130T	0.006	pfam_PPI_1DARPP-32	pfam_PPI_1DARPP-32	-	no_errors	PPP1R1A	HGNC	ENSG00000135447				109	0	0	52	22	29.7297
ARHGEF25	0	genome.wustl.edu	37	12	58004392	58004392	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	12	58004392	58004392	C	T	SNP	ARHGEF25	ENST00000333972	human	ensembl	74_37	+1	known	missense	c.139	p.P47S	0.008	NULL	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF25	HGNC	ENSG00000240771				46	0	0	10	20	66.6667
VWF	0	genome.wustl.edu	37	12	6128804	6128804	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	12	6128804	6128804	C	A	SNP	VWF	ENST00000261405	human	ensembl	74_37	-1	known	missense	c.3780	p.E1260D	0.998	pirsf_VWF	pirsf_VWF,pfam_VWF_type-D,pfam_VWF_A,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_VWF_A,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_A,pfscan_VWF_C	-	no_errors	VWF	HGNC	ENSG00000110799				55	0	0	21	29	58
CCT2	0	genome.wustl.edu	37	12	69991508	69991508	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	12	69991508	69991508	C	T	SNP	CCT2	ENST00000299300	human	ensembl	74_37	+1	known	missense	c.1193	p.A398V	1.000	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,prints_Chaprnin_Cpn60,tigrfam_Chap_CCT_beta	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,superfamily_GroEL-like_apical_dom,prints_Chaperone_TCP-1,prints_Chaprnin_Cpn60,tigrfam_Chap_CCT_beta	-	no_errors	CCT2	HGNC	ENSG00000166226				54	0	0	13	18	58.0645
TPH2	0	genome.wustl.edu	37	12	72366417	72366417	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	12	72366417	72366417	T	G	SNP	TPH2	ENST00000333850	human	ensembl	74_37	+1	known	missense	c.727	p.F243V	1.000	pfam_Aromatic-AA_hydroxylase_C,superfamily_Aromatic-AA_hydroxylase_C,pirsf_Tyrosine_3-monooxygenase-like,tigrfam_Trp_5_mOase	pfam_Aromatic-AA_hydroxylase_C,pfam_ACT_dom,superfamily_Aromatic-AA_hydroxylase_C,pirsf_Tyrosine_3-monooxygenase-like,prints_Aromatic-AA_hydroxylase_C,tigrfam_Trp_5_mOase	-	no_errors	TPH2	HGNC	ENSG00000139287				417	0	0	146	253	63.4085
TRHDE	0	genome.wustl.edu	37	12	72956767	72956767	+	Silent	SNP	T	T	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	12	72956767	72956767	T	C	SNP	TRHDE	ENST00000261180	human	ensembl	74_37	+1	known	silent	c.1854	p.H618	1.000	NULL	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	TRHDE	HGNC	ENSG00000072657				147	0	0	69	76	52.4138
PZP	0	genome.wustl.edu	37	12	9304868	9304868	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	12	9304868	9304868	A	C	SNP	PZP	ENST00000261336	human	ensembl	74_37	-1	known	missense	c.4160	p.V1387G	0.977	pfam_A-macroglobulin_rcpt-bd,superfamily_A-macroglobulin_rcpt-bd	pfam_A2M_comp,pfam_A2M_N_2,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_SV_autoAg,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd	-	no_errors	PZP	HGNC	ENSG00000126838				99	0	0	28	54	65.8537
TM9SF2	0	genome.wustl.edu	37	13	100199353	100199353	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	13	100199353	100199353	A	G	SNP	TM9SF2	ENST00000376387	human	ensembl	74_37	+1	known	missense	c.1265	p.Y422C	1.000	pfam_EMP70	pfam_EMP70	-	no_errors	TM9SF2	HGNC	ENSG00000125304				119	1	0.833333	123	32	20.6452
NALCN	0	genome.wustl.edu	37	13	101714417	101714417	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	13	101714417	101714417	A	G	SNP	NALCN	ENST00000251127	human	ensembl	74_37	-1	known	missense	c.4658	p.L1553P	1.000	NULL	pfam_Ion_trans_dom	-	no_errors	NALCN	HGNC	ENSG00000102452				60	0	0	43	31	41.8919
ITGBL1	0	genome.wustl.edu	37	13	102235690	102235690	+	Silent	SNP	T	T	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	13	102235690	102235690	T	C	SNP	ITGBL1	ENST00000376180	human	ensembl	74_37	+1	known	silent	c.852	p.S284	0.999	pfam_EGF_extracell,smart_EG-like_dom	pfam_EGF_extracell,smart_EG-like_dom	-	no_errors	ITGBL1	HGNC	ENSG00000198542				183	0	0	181	48	20.9607
SLC10A2	0	genome.wustl.edu	37	13	103703731	103703731	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	13	103703731	103703731	C	T	SNP	SLC10A2	ENST00000245312	human	ensembl	74_37	-1	known	missense	c.637	p.G213R	1.000	pfam_BilAc/Na_symport,tigrfam_Bil_ac_transpt	pfam_BilAc/Na_symport,tigrfam_Bil_ac_transpt	-	no_errors	SLC10A2	HGNC	ENSG00000125255				63	0	0	54	44	44.898
TPTE2	0	genome.wustl.edu	37	13	20024422	20024422	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	13	20024422	20024422	G	C	SNP	TPTE2	ENST00000382977	human	ensembl	74_37	-1	known	missense	c.865	p.H289D	1.000	pfam_Dual-sp_phosphatase_cat-dom,pfscan_Phosphatase_tensin-typ	pfam_Tensin_phosphatase_C2-dom,pfam_Ion_trans_dom,pfam_Dual-sp_phosphatase_cat-dom,superfamily_C2_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TPTE2	HGNC	ENSG00000132958				118	0	0	74	69	48.2517
N6AMT2	0	genome.wustl.edu	37	13	21306107	21306107	+	Silent	SNP	G	G	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	13	21306107	21306107	G	C	SNP	N6AMT2	ENST00000382754	human	ensembl	74_37	-1	known	silent	c.381	p.P127	0.000	pfam_N6_adenine_Mtase-rel_euk	pfam_N6_adenine_Mtase-rel_euk	-	no_errors	N6AMT2	HGNC	ENSG00000150456				75	0	0	59	42	41.5842
MTUS2	0	genome.wustl.edu	37	13	29601027	29601027	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	13	29601027	29601027	A	C	SNP	MTUS2	ENST00000431530	human	ensembl	74_37	+1	known	missense	c.2222	p.K741T	1.000	NULL	NULL	-	no_errors	MTUS2	HGNC	ENSG00000132938				51	0	0	36	30	45.4545
N4BP2L1	0	genome.wustl.edu	37	13	32977295	32977295	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	13	32977295	32977295	C	T	SNP	N4BP2L1	ENST00000380130	human	ensembl	74_37	-1	known	missense	c.516	p.M172I	1.000	pfam_Zeta_toxin_domain,superfamily_P-loop_NTPase	pfam_Zeta_toxin_domain,superfamily_P-loop_NTPase	-	no_errors	N4BP2L1	HGNC	ENSG00000139597				78	0	0	66	16	19.5122
CCNA1	0	genome.wustl.edu	37	13	37007220	37007220	+	Silent	SNP	A	A	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	13	37007220	37007220	A	C	SNP	CCNA1	ENST00000255465	human	ensembl	74_37	+1	known	silent	c.159	p.G53	0.004	NULL	pfam_Cyclin_N,pfam_Cyclin_C-dom,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_A/B/D/E	-	no_errors	CCNA1	HGNC	ENSG00000133101				121	0	0	75	56	42.7481
ENOX1	0	genome.wustl.edu	37	13	43934124	43934124	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	13	43934124	43934124	T	C	SNP	ENOX1	ENST00000261488	human	ensembl	74_37	-1	known	missense	c.452	p.E151G	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	ENOX1	HGNC	ENSG00000120658				58	0	0	55	18	24.6575
PCDH8	0	genome.wustl.edu	37	13	53419718	53419718	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	13	53419718	53419718	G	A	SNP	PCDH8	ENST00000377942	human	ensembl	74_37	-1	known	missense	c.2681	p.A894V	1.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH8	HGNC	ENSG00000136099				51	0	0	31	9	22.5
KLC1	0	genome.wustl.edu	37	14	104139748	104139748	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	14	104139748	104139748	G	T	SNP	KLC1	ENST00000334553	human	ensembl	74_37	+1	known	missense	c.1241	p.R414M	1.000	smart_TPR_repeat,pfscan_TPR-contain_dom	pfam_Rabaptin_Rab5-bd_dom,pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Kinesin_light	-	no_errors	KLC1	HGNC	ENSG00000126214				61	0	0	30	16	34.7826
BNIP3P1	0	genome.wustl.edu	37	14	28733791	28733791	+	RNA	SNP	A	A	G			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	14	28733791	28733791	A	G	SNP	BNIP3P1	ENST00000550043	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.926	-	-	-	no_errors	BNIP3P1	HGNC	ENSG00000197358				23	0	0	16	4	20
NIN	0	genome.wustl.edu	37	14	51239704	51239704	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	14	51239704	51239704	G	C	SNP	NIN	ENST00000245441	human	ensembl	74_37	-1	known	missense	c.776	p.T259S	1.000	NULL	superfamily_tRNA-bd_arm,pfscan_EF_hand_dom	-	no_errors	NIN	HGNC	ENSG00000100503				33	0	0	28	8	22.2222
FERMT2	0	genome.wustl.edu	37	14	53386031	53386031	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	14	53386031	53386031	C	A	SNP	FERMT2	ENST00000343279	human	ensembl	74_37	-1	known	missense	c.201	p.K67N	1.000	NULL	pfam_FERM_central,pfam_Pleckstrin_homology,pfam_FERM_N,superfamily_FERM_central,smart_Band_41_domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	FERMT2	HGNC	ENSG00000073712				121	0	0	78	23	22.7723
JKAMP	0	genome.wustl.edu	37	14	59954532	59954532	+	Silent	SNP	C	C	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	14	59954532	59954532	C	T	SNP	JKAMP	ENST00000356057	human	ensembl	74_37	+1	known	silent	c.261	p.Y87	1.000	pfam_DUF766	pfam_DUF766	-	no_errors	JKAMP	HGNC	ENSG00000050130				217	0	0	120	60	33.3333
SYNE2	0	genome.wustl.edu	37	14	64483265	64483265	+	Silent	SNP	A	A	G			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	14	64483265	64483265	A	G	SNP	SYNE2	ENST00000358025	human	ensembl	74_37	+1	known	silent	c.4803	p.L1601	0.980	NULL	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654				22	0	0	15	5	25
ZFYVE26	0	genome.wustl.edu	37	14	68273333	68273333	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	14	68273333	68273333	G	C	SNP	ZFYVE26	ENST00000347230	human	ensembl	74_37	-1	known	missense	c.946	p.P316A	0.004	NULL	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	-	no_errors	ZFYVE26	HGNC	ENSG00000072121				59	0	0	51	25	32.8947
SLC8A3	0	genome.wustl.edu	37	14	70634187	70634187	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	14	70634187	70634187	C	T	SNP	SLC8A3	ENST00000381269	human	ensembl	74_37	-1	known	missense	c.953	p.R318Q	1.000	tigrfam_Na_Ca_Ex	pfam_NaCa_Exmemb,pfam_Calx_beta,smart_Calx_beta,prints_Na_Ca_Ex,tigrfam_Na_Ca_Ex	-	no_errors	SLC8A3	HGNC	ENSG00000100678				86	0	0	39	24	38.0952
ADAM21P1	0	genome.wustl.edu	37	14	70712997	70712997	+	RNA	SNP	C	C	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	14	70712997	70712997	C	T	SNP	ADAM21P1	ENST00000530196	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.740	-	-	-	no_errors	ADAM21P1	HGNC	ENSG00000235812				49	0	0	33	13	28.2609
SIPA1L1	0	genome.wustl.edu	37	14	72055765	72055765	+	Silent	SNP	G	G	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	14	72055765	72055765	G	A	SNP	SIPA1L1	ENST00000555818	human	ensembl	74_37	+1	known	silent	c.1176	p.L392	1.000	NULL	pfam_DUF3401,pfam_Rap_GAP_dom,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP_dom	-	no_errors	SIPA1L1	HGNC	ENSG00000197555				50	0	0	30	11	26.8293
PAPLN	0	genome.wustl.edu	37	14	73711448	73711448	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	14	73711448	73711448	C	T	SNP	PAPLN	ENST00000427855	human	ensembl	74_37	+1	known	missense	c.151	p.R51C	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS	pfam_Ig_I-set,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_Prot_inh_Kunz-m,pfam_PLAC,superfamily_Prot_inh_Kunz-m,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_Prot_inh_Kunz-m,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Prot_inh_Kunz-m,pfscan_Ig-like_dom,prints_Peptidase_M12B_ADAM-TS,prints_Prot_inh_Kunz-m	-	no_errors	PAPLN	HGNC	ENSG00000100767				11	0	0	3	4	57.1429
SYNDIG1L	0	genome.wustl.edu	37	14	74874600	74874600	+	Silent	SNP	G	G	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	14	74874600	74874600	G	C	SNP	SYNDIG1L	ENST00000331628	human	ensembl	74_37	-1	known	silent	c.510	p.L170	1.000	pfam_CD225/Dispanin_fam	pfam_CD225/Dispanin_fam	-	no_errors	SYNDIG1L	HGNC	ENSG00000183379				38	0	0	31	9	22.5
NRXN3	0	genome.wustl.edu	37	14	80328202	80328202	+	Silent	SNP	C	C	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	14	80328202	80328202	C	T	SNP	NRXN3	ENST00000335750	human	ensembl	74_37	+1	known	silent	c.3081	p.I1027	1.000	NULL	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN3	HGNC	ENSG00000021645				37	0	0	16	7	30.4348
TRIP11	0	genome.wustl.edu	37	14	92470272	92470272	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	14	92470272	92470272	C	T	SNP	TRIP11	ENST00000267622	human	ensembl	74_37	-1	known	missense	c.4048	p.E1350K	0.258	NULL	superfamily_Ribosomal_L29,pfscan_GRIP	-	no_errors	TRIP11	HGNC	ENSG00000100815				100	0	0	55	29	34.5238
SLC24A4	0	genome.wustl.edu	37	14	92959928	92959928	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	14	92959928	92959928	G	A	SNP	SLC24A4	ENST00000532405	human	ensembl	74_37	+1	known	missense	c.1825	p.V609I	1.000	NULL	pfam_NaCa_Exmemb,tigrfam_K/Na/Ca-exchanger	-	no_errors	SLC24A4	HGNC	ENSG00000140090				30	0	0	14	9	39.1304
GABRB3	0	genome.wustl.edu	37	15	26806140	26806140	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	15	26806140	26806140	T	A	SNP	GABRB3	ENST00000299267	human	ensembl	74_37	-1	known	missense	c.1019	p.K340M	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,prints_GABBAg_rcpt,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,prints_GABAAb_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRB3	HGNC	ENSG00000166206				78	0	0	32	33	50.7692
OCA2	0	genome.wustl.edu	37	15	28211866	28211866	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	15	28211866	28211866	G	T	SNP	OCA2	ENST00000354638	human	ensembl	74_37	-1	known	missense	c.1606	p.L536I	1.000	pfam_Cit_transptr-like_dom,pfam_Arsenical_pump_ArsB,tigrfam_Arsenical_pump_ArsB	pfam_Cit_transptr-like_dom,pfam_Na/sul_symport,pfam_Arsenical_pump_ArsB,tigrfam_Arsenical_pump_ArsB	-	no_errors	OCA2	HGNC	ENSG00000104044				70	0	0	15	14	48.2759
RYR3	0	genome.wustl.edu	37	15	34129190	34129190	+	Splice_Site	SNP	T	T	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	15	34129190	34129190	T	C	SNP	RYR3	ENST00000389232	human	ensembl	74_37	+1	known	splice_site	c.11650+2	e88+2	1.000	-	-	-	no_errors	RYR3	HGNC	ENSG00000198838				39	0	0	6	7	53.8462
SEMA6D	0	genome.wustl.edu	37	15	48063084	48063084	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	15	48063084	48063084	A	G	SNP	SEMA6D	ENST00000316364	human	ensembl	74_37	+1	known	missense	c.2324	p.E775G	1.000	NULL	pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,pfscan_Semap_dom	-	no_errors	SEMA6D	HGNC	ENSG00000137872				70	0	0	28	19	40.4255
WDR72	0	genome.wustl.edu	37	15	53908253	53908253	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	15	53908253	53908253	T	G	SNP	WDR72	ENST00000360509	human	ensembl	74_37	-1	known	missense	c.2150	p.K717T	0.978	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR72	HGNC	ENSG00000166415				68	0	0	20	14	41.1765
ALPK3	0	genome.wustl.edu	37	15	85406846	85406846	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	15	85406846	85406846	G	A	SNP	ALPK3	ENST00000258888	human	ensembl	74_37	+1	known	missense	c.5080	p.A1694T	0.001	pfam_MHCK_EF2_kinase,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	pfam_MHCK_EF2_kinase,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase,pfscan_Ig-like_dom	-	no_errors	ALPK3	HGNC	ENSG00000136383				49	0	0	17	11	39.2857
KLHL25	0	genome.wustl.edu	37	15	86311776	86311776	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	15	86311776	86311776	G	T	SNP	KLHL25	ENST00000337975	human	ensembl	74_37	-1	known	missense	c.1266	p.N422K	1.000	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL25	HGNC	ENSG00000183655				47	0	0	12	9	42.8571
BFAR	0	genome.wustl.edu	37	16	14758921	14758921	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	16	14758921	14758921	G	C	SNP	BFAR	ENST00000261658	human	ensembl	74_37	+1	known	missense	c.1153	p.E385Q	1.000	NULL	pfam_SAM_type1,pfam_Znf_C3HC4_RING-type,pfam_SAM_2,superfamily_SAM/pointed,smart_Znf_RING,smart_SAM,pfscan_SAM,pfscan_Znf_RING	-	no_errors	BFAR	HGNC	ENSG00000103429				34	0	0	27	14	34.1463
DCUN1D3	0	genome.wustl.edu	37	16	20871547	20871547	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	16	20871547	20871547	G	T	SNP	DCUN1D3	ENST00000324344	human	ensembl	74_37	-1	known	missense	c.576	p.D192E	1.000	pfam_PONY_dom	pfam_PONY_dom	-	no_errors	DCUN1D3	HGNC	ENSG00000188215				176	0	0	60	89	59.7315
GTF3C1	0	genome.wustl.edu	37	16	27509002	27509002	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	16	27509002	27509002	T	G	SNP	GTF3C1	ENST00000356183	human	ensembl	74_37	-1	known	missense	c.2306	p.N769T	1.000	NULL	pfam_TFIIIC_Bblock-bd	-	no_errors	GTF3C1	HGNC	ENSG00000077235				94	0	0	44	19	30.1587
ADCY9	0	genome.wustl.edu	37	16	4016160	4016160	+	Silent	SNP	T	T	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	16	4016160	4016160	T	C	SNP	ADCY9	ENST00000294016	human	ensembl	74_37	-1	known	silent	c.3678	p.R1226	0.281	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY9	HGNC	ENSG00000162104				179	0	0	94	49	34.2657
ADCY7	0	genome.wustl.edu	37	16	50342255	50342255	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	16	50342255	50342255	T	A	SNP	ADCY7	ENST00000254235	human	ensembl	74_37	+1	known	missense	c.1868	p.V623E	0.981	NULL	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY7	HGNC	ENSG00000121281				142	0	0	44	69	61.0619
ADCY7	0	genome.wustl.edu	37	16	50343519	50343519	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	16	50343519	50343519	G	A	SNP	ADCY7	ENST00000254235	human	ensembl	74_37	+1	known	missense	c.2122	p.A708T	0.000	NULL	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY7	HGNC	ENSG00000121281				48	0	0	14	26	65
SALL1	0	genome.wustl.edu	37	16	51175799	51175799	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	16	51175799	51175799	C	T	SNP	SALL1	ENST00000251020	human	ensembl	74_37	-1	known	missense	c.334	p.D112N	0.999	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SALL1	HGNC	ENSG00000103449				164	0	0	83	36	30.2521
MMP2	0	genome.wustl.edu	37	16	55527097	55527097	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	16	55527097	55527097	C	A	SNP	MMP2	ENST00000219070	human	ensembl	74_37	+1	known	missense	c.1364	p.T455N	0.804	NULL	pfam_Pept_M10_metallopeptidase,pfam_FN_type2_col-bd,pfam_Hemopexin-like_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Kringle-like,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_FN_type2_col-bd,smart_Hemopexin-like_repeat,pfscan_FN_type2_col-bd,prints_Pept_M10A	-	no_errors	MMP2	HGNC	ENSG00000087245				55	0	0	16	25	60.9756
KIAA0513	0	genome.wustl.edu	37	16	85111161	85111161	+	Silent	SNP	G	G	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	16	85111161	85111161	G	A	SNP	KIAA0513	ENST00000258180	human	ensembl	74_37	+1	known	silent	c.705	p.S235	0.395	NULL	pfam_SBF2	-	no_errors	KIAA0513	HGNC	ENSG00000135709				36	0	0	17	20	54.0541
MYH13	0	genome.wustl.edu	37	17	10216005	10216005	+	Silent	SNP	C	C	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	17	10216005	10216005	C	T	SNP	MYH13	ENST00000252172	human	ensembl	74_37	-1	known	silent	c.4251	p.S1417	1.000	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH13	HGNC	ENSG00000006788				27	0	0	9	6	40
MYH4	0	genome.wustl.edu	37	17	10351989	10351989	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	17	10351989	10351989	C	T	SNP	MYH4	ENST00000255381	human	ensembl	74_37	-1	known	missense	c.4477	p.E1493K	1.000	pfam_Myosin_tail,superfamily_tRNA-bd_arm	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH4	HGNC	ENSG00000264424				111	0	0	34	33	49.2537
KRT16P2	0	genome.wustl.edu	37	17	16734855	16734855	+	RNA	SNP	C	C	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	17	16734855	16734855	C	T	SNP	KRT16P2	ENST00000579062	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.999	-	-	-	no_errors	KRT16P2	HGNC	ENSG00000227300				24	0	0	26	3	10.3448
PROCA1	0	genome.wustl.edu	37	17	27031231	27031231	+	Splice_Site	SNP	C	C	G			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	17	27031231	27031231	C	G	SNP	PROCA1	ENST00000439862	human	ensembl	74_37	-1	known	splice_site	c.363-1	e5-1	1.000	-	-	-	no_errors	PROCA1	HGNC	ENSG00000167525				87	0	0	108	29	21.1679
LHX1	0	genome.wustl.edu	37	17	35300353	35300353	+	Silent	SNP	G	G	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	17	35300353	35300353	G	A	SNP	LHX1	ENST00000254457	human	ensembl	74_37	+1	known	silent	c.1146	p.L382	1.000	NULL	pfam_Znf_LIM,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeobox_dom,pfscan_Znf_LIM,pfscan_Homeobox_dom	-	no_errors	LHX1	HGNC	ENSG00000132130				40	0	0	17	6	26.087
DGKE	0	genome.wustl.edu	37	17	54912210	54912210	+	Silent	SNP	G	G	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	17	54912210	54912210	G	A	SNP	DGKE	ENST00000284061	human	ensembl	74_37	+1	known	silent	c.54	p.A18	0.914	NULL	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	DGKE	HGNC	ENSG00000153933				243	0	0	167	71	29.8319
DGKE	0	genome.wustl.edu	37	17	54912211	54912211	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	17	54912211	54912211	G	T	SNP	DGKE	ENST00000284061	human	ensembl	74_37	+1	known	missense	c.55	p.D19Y	1.000	NULL	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	DGKE	HGNC	ENSG00000153933				238	0	0	167	70	29.5359
ABCA6	0	genome.wustl.edu	37	17	67136759	67136759	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	17	67136759	67136759	T	A	SNP	ABCA6	ENST00000284425	human	ensembl	74_37	-1	known	missense	c.86	p.E29V	0.893	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA6	HGNC	ENSG00000154262				48	0	0	42	23	35.3846
COG1	0	genome.wustl.edu	37	17	71192707	71192707	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	17	71192707	71192707	A	G	SNP	COG1	ENST00000299886	human	ensembl	74_37	+1	known	missense	c.377	p.E126G	0.883	NULL	NULL	-	no_errors	COG1	HGNC	ENSG00000166685				155	0	0	80	54	40.2985
FBF1	0	genome.wustl.edu	37	17	73913844	73913844	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	17	73913844	73913844	C	G	SNP	FBF1	ENST00000389570	human	ensembl	74_37	-1	known	missense	c.2432	p.R811P	1.000	NULL	superfamily_HRDC-like	-	no_errors	FBF1	HGNC	ENSG00000188878				17	0	0	15	3	16.6667
ZACN	0	genome.wustl.edu	37	17	74077711	74077711	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	17	74077711	74077711	G	C	SNP	ZACN	ENST00000334586	human	ensembl	74_37	+1	known	missense	c.755	p.G252A	0.949	superfamily_Neurotrans-gated_channel_TM	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM	-	no_errors	ZACN	HGNC	ENSG00000186919				185	0	0	86	40	31.746
EXOC7	0	genome.wustl.edu	37	17	74093928	74093928	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	17	74093928	74093928	G	A	SNP	EXOC7	ENST00000335146	human	ensembl	74_37	-1	known	nonsense	c.589	p.Q197*	0.962	superfamily_Cullin_repeat-like_dom	pfam_Exo70,superfamily_Cullin_repeat-like_dom	-	no_errors	EXOC7	HGNC	ENSG00000182473				106	0	0	56	29	34.1176
SLC25A10	0	genome.wustl.edu	37	17	79671335	79671335	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	17	79671335	79671335	G	A	SNP	SLC25A10	ENST00000541223	human	ensembl	74_37	+1	known	missense	c.136	p.E46K	0.991	NULL	pfam_Mitochondrial_sb/sol_carrier,pfam_Ribosomal_L7/L12_C,superfamily_Mt_carrier_dom,superfamily_Ribosomal_L7/L12_oligo,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_uncoupling	-	no_errors	SLC25A10	HGNC	ENSG00000183048				40	0	0	18	14	43.75
DSG3	0	genome.wustl.edu	37	18	29054099	29054099	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	18	29054099	29054099	C	T	SNP	DSG3	ENST00000257189	human	ensembl	74_37	+1	known	missense	c.2117	p.T706M	0.087	NULL	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Desmoglein,prints_Desmosomal_cadherin	-	no_errors	DSG3	HGNC	ENSG00000134757				107	0	0	28	48	63.1579
SLC14A2	0	genome.wustl.edu	37	18	43262349	43262349	+	Silent	SNP	C	C	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	18	43262349	43262349	C	A	SNP	SLC14A2	ENST00000255226	human	ensembl	74_37	+1	known	silent	c.2628	p.T876	1.000	pfam_Urea_transporter	pfam_Urea_transporter	-	no_errors	SLC14A2	HGNC	ENSG00000132874				291	0	0	184	89	32.6007
ATP8B1	0	genome.wustl.edu	37	18	55338741	55338741	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	18	55338741	55338741	G	A	SNP	ATP8B1	ENST00000283684	human	ensembl	74_37	-1	known	nonsense	c.1891	p.R631*	0.992	pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP8B1	HGNC	ENSG00000081923				97	0	0	43	53	55.2083
KCNG2	0	genome.wustl.edu	37	18	77659615	77659615	+	Silent	SNP	G	G	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	18	77659615	77659615	G	A	SNP	KCNG2	ENST00000316249	human	ensembl	74_37	+1	known	silent	c.1200	p.P400	0.979	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNG2	HGNC	ENSG00000178342				78	0	0	18	38	67.8571
PPAN	0	genome.wustl.edu	37	19	10221724	10221724	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	19	10221724	10221724	G	T	SNP	PPAN	ENST00000253107	human	ensembl	74_37	+1	known	missense	c.1305	p.K435N	0.000	NULL	pfam_Brix,superfamily_Anticodon-bd,smart_Brix,pfscan_Brix	-	no_errors	PPAN	HGNC	ENSG00000130810				50	0	0	23	13	36.1111
S1PR2	0	genome.wustl.edu	37	19	10334638	10334638	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	19	10334638	10334638	C	T	SNP	S1PR2	ENST00000590320	human	ensembl	74_37	-1	known	missense	c.944	p.R315Q	0.890	prints_EDG5_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_EDG5_rcpt,prints_GPCR_Rhodpsn,prints_S1P_rcpt,prints_Melcrt_ACTH_rcpt	-	no_errors	S1PR2	HGNC	ENSG00000267534				22	0	0	5	16	76.1905
SMARCA4	0	genome.wustl.edu	37	19	11138521	11138521	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	19	11138521	11138521	C	T	SNP	SMARCA4	ENST00000358026	human	ensembl	74_37	+1	known	nonsense	c.3277	p.R1093*	1.000	superfamily_P-loop_NTPase,pfscan_Helicase_C	pfam_SNF2_N,pfam_Bromodomain,pfam_BRK_domain,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,pfam_Gln-Leu-Gln_QLQ,superfamily_P-loop_NTPase,superfamily_Bromodomain,smart_Gln-Leu-Gln_QLQ,smart_HAS_subgr,smart_BRK_domain,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Bromodomain,prints_Bromodomain,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Bromodomain	-	no_errors	SMARCA4	HGNC	ENSG00000127616				164	0	0	55	85	60.7143
ZNF333	0	genome.wustl.edu	37	19	14817553	14817553	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	19	14817553	14817553	G	T	SNP	ZNF333	ENST00000292530	human	ensembl	74_37	+1	known	missense	c.479	p.G160V	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,smart_Znf_BED_prd,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF333	HGNC	ENSG00000160961				96	0	0	52	23	30.6667
PSMD8	0	genome.wustl.edu	37	19	38873943	38873943	+	Silent	SNP	G	G	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	19	38873943	38873943	G	A	SNP	PSMD8	ENST00000215071	human	ensembl	74_37	+1	known	silent	c.966	p.Q322	1.000	NULL	pfam_SAC3/GANP/Nin1/mts3/eIF-3-p25	-	no_errors	PSMD8	HGNC	ENSG00000099341				60	0	0	7	22	75.8621
FBXO17	0	genome.wustl.edu	37	19	39439306	39439306	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	19	39439306	39439306	C	A	SNP	FBXO17	ENST00000292852	human	ensembl	74_37	-1	known	missense	c.362	p.G121V	1.000	pfam_F-box-assoc_dom,superfamily_Galactose-bd-like,pfscan_F-box-assoc_dom	pfam_F-box-assoc_dom,pfam_F-box_dom,superfamily_Galactose-bd-like,superfamily_F-box_dom,smart_F-box_dom,pfscan_F-box_dom,pfscan_F-box-assoc_dom	-	no_errors	FBXO17	HGNC	ENSG00000269190				89	0	0	29	44	60.274
PRX	0	genome.wustl.edu	37	19	40901570	40901570	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	19	40901570	40901570	G	A	SNP	PRX	ENST00000324001	human	ensembl	74_37	-1	known	nonsense	c.2689	p.R897*	0.129	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PRX	HGNC	ENSG00000105227				92	0	0	38	47	55.2941
CEACAM7	0	genome.wustl.edu	37	19	42187748	42187748	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	19	42187748	42187748	C	G	SNP	CEACAM7	ENST00000006724	human	ensembl	74_37	-1	known	missense	c.674	p.S225T	0.000	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	CEACAM7	HGNC	ENSG00000007306				252	1	0.395257	142	62	30.3922
PPP5D1	0	genome.wustl.edu	37	19	47028997	47028997	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	19	47028997	47028997	C	T	SNP	PPP5D1	ENST00000414155	human	ensembl	74_37	-1	putative	missense	c.280	p.V94M	1.000	pfam_PPP_dom	pfam_PPP_dom	-	no_errors	PPP5D1	HGNC	ENSG00000230510				21	0	0	19	3	13.6364
PRRG2	0	genome.wustl.edu	37	19	50086866	50086866	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	19	50086866	50086866	C	A	SNP	PRRG2	ENST00000246794	human	ensembl	74_37	+1	known	missense	c.153	p.N51K	0.990	superfamily_GLA_domain,smart_GLA_domain,pfscan_GLA_domain	pfam_GLA_domain,superfamily_GLA_domain,smart_GLA_domain,pfscan_GLA_domain,prints_GLA_domain	-	no_errors	PRRG2	HGNC	ENSG00000126460				140	0	0	40	58	59.1837
MUC16	0	genome.wustl.edu	37	19	9085519	9085519	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	19	9085519	9085519	G	C	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.6296	p.S2099C	0.113	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				173	0	0	89	49	35.5072
SLC5A7	0	genome.wustl.edu	37	2	108626799	108626799	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	2	108626799	108626799	A	C	SNP	SLC5A7	ENST00000264047	human	ensembl	74_37	+1	known	missense	c.1225	p.S409R	1.000	pfam_Na/solute_symporter,pfscan_Na/solute_symporter	pfam_Na/solute_symporter,pfscan_Na/solute_symporter	-	no_errors	SLC5A7	HGNC	ENSG00000115665				74	0	0	79	20	20.202
KCNF1	0	genome.wustl.edu	37	2	11053005	11053005	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	2	11053005	11053005	C	A	SNP	KCNF1	ENST00000295082	human	ensembl	74_37	+1	known	missense	c.453	p.D151E	1.000	NULL	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,pfam_PKD1_2_channel,superfamily_BTB/POZ_fold,prints_K_chnl,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv6	-	no_errors	KCNF1	HGNC	ENSG00000162975				40	0	0	30	20	40
GLI2	0	genome.wustl.edu	37	2	121744183	121744183	+	Silent	SNP	G	G	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	2	121744183	121744183	G	A	SNP	GLI2	ENST00000361492	human	ensembl	74_37	+1	known	silent	c.2286	p.P762	0.994	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI2	HGNC	ENSG00000074047				60	0	0	34	34	50
NCKAP5	0	genome.wustl.edu	37	2	133489467	133489467	+	Silent	SNP	A	A	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	2	133489467	133489467	A	C	SNP	NCKAP5	ENST00000317721	human	ensembl	74_37	-1	known	silent	c.5286	p.S1762	0.043	NULL	NULL	-	no_errors	NCKAP5	HGNC	ENSG00000176771				79	0	0	79	24	23.301
THSD7B	0	genome.wustl.edu	37	2	138163188	138163188	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	2	138163188	138163188	T	A	SNP	THSD7B	ENST00000272643	human	ensembl	74_37	+1	known	missense	c.2506	p.S836T	0.786	superfamily_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD7B	HGNC	ENSG00000144229				54	0	0	21	24	53.3333
PXDN	0	genome.wustl.edu	37	2	1639282	1639282	+	Silent	SNP	A	A	G			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	2	1639282	1639282	A	G	SNP	PXDN	ENST00000252804	human	ensembl	74_37	-1	known	silent	c.4218	p.L1406	0.996	NULL	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like_dom	-	no_errors	PXDN	HGNC	ENSG00000130508				14	0	0	4	7	63.6364
CSRNP3	0	genome.wustl.edu	37	2	166535369	166535369	+	Silent	SNP	G	G	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	2	166535369	166535369	G	A	SNP	CSRNP3	ENST00000314499	human	ensembl	74_37	+1	known	silent	c.864	p.L288	1.000	NULL	prints_Cys/Ser-rich_nuc_prot	-	no_errors	CSRNP3	HGNC	ENSG00000178662				62	0	0	57	23	28.75
GALNT3	0	genome.wustl.edu	37	2	166611517	166611517	+	Silent	SNP	T	T	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	2	166611517	166611517	T	C	SNP	GALNT3	ENST00000392701	human	ensembl	74_37	-1	known	silent	c.1449	p.K483	1.000	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT3	HGNC	ENSG00000115339				53	0	0	61	5	7.57576
SCN1A	0	genome.wustl.edu	37	2	166848769	166848769	+	Silent	SNP	G	G	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	2	166848769	166848769	G	A	SNP	SCN1A	ENST00000303395	human	ensembl	74_37	-1	known	silent	c.5016	p.N1672	1.000	pfam_Ion_trans_dom,pfam_PKD1_2_channel	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_a1su,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN1A	HGNC	ENSG00000144285				118	0	0	67	59	46.8254
SCN1A	0	genome.wustl.edu	37	2	166897847	166897847	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	2	166897847	166897847	A	G	SNP	SCN1A	ENST00000303395	human	ensembl	74_37	-1	known	missense	c.2309	p.V770A	1.000	NULL	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_a1su,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN1A	HGNC	ENSG00000144285				72	0	0	66	60	47.619
LRP2	0	genome.wustl.edu	37	2	170063676	170063676	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	2	170063676	170063676	A	C	SNP	LRP2	ENST00000263816	human	ensembl	74_37	-1	known	missense	c.6554	p.L2185R	0.999	smart_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479				79	0	0	82	34	29.3103
TTN	0	genome.wustl.edu	37	2	179453733	179453733	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	2	179453733	179453733	T	G	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.55015	p.K18339Q	1.000	pfam_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				17	0	0	15	6	28.5714
TTN	0	genome.wustl.edu	37	2	179501403	179501403	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	2	179501403	179501403	T	C	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.33347	p.K11116R	1.000	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				43	0	0	40	18	31.0345
TTN	0	genome.wustl.edu	37	2	179554061	179554061	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	2	179554061	179554061	T	C	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.28235	p.K9412R	0.086	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				36	0	0	28	14	33.3333
TTN	0	genome.wustl.edu	37	2	179604512	179604512	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	2	179604512	179604512	T	C	SNP	TTN	ENST00000342175	human	ensembl	74_37	-1	known	missense	c.12935	p.E4312G	1.000	superfamily_RNaseH-like_dom	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				162	0	0	112	114	50.4425
TTN	0	genome.wustl.edu	37	2	179611317	179611317	+	Silent	SNP	T	T	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	2	179611317	179611317	T	C	SNP	TTN	ENST00000360870	human	ensembl	74_37	-1	known	silent	c.15810	p.V5270	0.806	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Titin_Z,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				49	0	0	47	15	24.1935
DNAJC10	0	genome.wustl.edu	37	2	183622502	183622502	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	2	183622502	183622502	C	A	SNP	DNAJC10	ENST00000264065	human	ensembl	74_37	+1	known	nonsense	c.1893	p.Y631*	1.000	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold,pirsf_DnaJ_homolog_subfam-C	pfam_Thioredoxin_domain,pfam_DnaJ_domain,superfamily_Thioredoxin-like_fold,superfamily_DnaJ_domain,smart_DnaJ_domain,pirsf_DnaJ_homolog_subfam-C,pfscan_DnaJ_domain,prints_DnaJ_domain,prints_Thioredoxin	-	no_errors	DNAJC10	HGNC	ENSG00000077232				71	0	0	63	18	22.2222
DNAH7	0	genome.wustl.edu	37	2	196825250	196825250	+	Silent	SNP	A	A	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	2	196825250	196825250	A	T	SNP	DNAH7	ENST00000312428	human	ensembl	74_37	-1	known	silent	c.2625	p.S875	0.000	pfam_Dynein_heavy_dom-2	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,superfamily_P-loop_NTPase,superfamily_Signal_recog_particle_SRP9/14,smart_AAA+_ATPase,pfscan_EF_hand_dom	-	no_errors	DNAH7	HGNC	ENSG00000118997				87	0	0	74	28	27.451
ORC2	0	genome.wustl.edu	37	2	201776038	201776038	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	2	201776038	201776038	C	G	SNP	ORC2	ENST00000234296	human	ensembl	74_37	-1	known	missense	c.1720	p.E574Q	1.000	NULL	pfam_ORC2	-	no_errors	ORC2	HGNC	ENSG00000115942				41	0	0	48	10	17.2414
MAP2	0	genome.wustl.edu	37	2	210558202	210558202	+	Silent	SNP	T	T	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	2	210558202	210558202	T	C	SNP	MAP2	ENST00000360351	human	ensembl	74_37	+1	known	silent	c.1308	p.T436	0.130	pfam_MAP2_projctn	pfam_MAP2_projctn,pfam_MAP_tubulin-bd_rpt	-	no_errors	MAP2	HGNC	ENSG00000078018				48	0	0	54	12	18.1818
MAP2	0	genome.wustl.edu	37	2	210574735	210574735	+	Silent	SNP	T	T	G			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	2	210574735	210574735	T	G	SNP	MAP2	ENST00000360351	human	ensembl	74_37	+1	known	silent	c.4830	p.S1610	1.000	NULL	pfam_MAP2_projctn,pfam_MAP_tubulin-bd_rpt	-	no_errors	MAP2	HGNC	ENSG00000078018				135	0	0	107	35	24.6479
RUFY4	0	genome.wustl.edu	37	2	218940223	218940223	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	2	218940223	218940223	A	T	SNP	RUFY4	ENST00000374155	human	ensembl	74_37	+1	known	missense	c.1068	p.E356D	0.001	NULL	pfam_Run,superfamily_Znf_FYVE_PHD,smart_Run,pfscan_Run	-	no_errors	RUFY4	HGNC	ENSG00000188282				18	0	0	13	4	23.5294
CXCR1	0	genome.wustl.edu	37	2	219029005	219029005	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	2	219029005	219029005	T	G	SNP	CXCR1	ENST00000295683	human	ensembl	74_37	-1	known	missense	c.930	p.Q310H	1.000	prints_GPCR_Rhodpsn,prints_Chemokine_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Chemokine_CXCR_1/2,prints_GPCR_Rhodpsn,prints_Chemokine_CXCR1,prints_Chemokine_rcpt,prints_Chemokine_CXCR4	-	no_errors	CXCR1	HGNC	ENSG00000163464				86	0	0	90	32	26.2295
PAX3	0	genome.wustl.edu	37	2	223158874	223158874	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	2	223158874	223158874	G	C	SNP	PAX3	ENST00000409828	human	ensembl	74_37	-1	known	missense	c.598	p.R200G	0.056	NULL	pfam_Paired_dom,superfamily_Homeodomain-like,smart_Paired_dom,pfscan_Paired_dom,prints_Paired_dom	-	no_errors	PAX3	HGNC	ENSG00000135903				137	0	0	101	27	21.0938
TRIP12	0	genome.wustl.edu	37	2	230633988	230633988	+	Silent	SNP	C	C	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	2	230633988	230633988	C	T	SNP	TRIP12	ENST00000283943	human	ensembl	74_37	-1	known	silent	c.5637	p.L1879	1.000	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,superfamily_HECT,superfamily_ARM-type_fold,smart_HECT,pfscan_HECT,pfscan_WWE-dom	-	no_errors	TRIP12	HGNC	ENSG00000153827				129	0	0	96	77	44.5087
NMUR1	0	genome.wustl.edu	37	2	232393579	232393579	+	Silent	SNP	G	G	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	2	232393579	232393579	G	A	SNP	NMUR1	ENST00000305141	human	ensembl	74_37	-1	known	silent	c.153	p.Y51	1.000	prints_NeuromedU_rcpt_1	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_NeuromedU_rcpt_1,prints_NeuromedU_rcpt,prints_GPCR_Rhodpsn	-	no_errors	NMUR1	HGNC	ENSG00000171596				51	0	0	40	12	23.0769
KCNJ13	0	genome.wustl.edu	37	2	233635805	233635805	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	2	233635805	233635805	C	T	SNP	KCNJ13	ENST00000233826	human	ensembl	74_37	-1	known	missense	c.268	p.D90N	1.000	pfam_K_chnl_inward-rec_Kir,pirsf_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_KCNJ13,prints_K_chnl_inward-rec_Kir	-	no_errors	KCNJ13	HGNC	ENSG00000115474				135	0	0	140	19	11.9497
COL6A3	0	genome.wustl.edu	37	2	238285459	238285459	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	2	238285459	238285459	A	C	SNP	COL6A3	ENST00000295550	human	ensembl	74_37	-1	known	missense	c.3026	p.I1009R	0.983	smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,smart_VWF_A,smart_Prot_inh_Kunz-m,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL6A3	HGNC	ENSG00000163359				243	0	0	266	32	10.7383
HDLBP	0	genome.wustl.edu	37	2	242181946	242181946	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	2	242181946	242181946	C	T	SNP	HDLBP	ENST00000310931	human	ensembl	74_37	-1	known	missense	c.2098	p.V700I	0.992	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	HDLBP	HGNC	ENSG00000115677				47	0	0	33	18	35.2941
CXXC11	0	genome.wustl.edu	37	2	242815067	242815067	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	2	242815067	242815067	G	A	SNP	CXXC11	ENST00000343216	human	ensembl	74_37	+1	known	missense	c.1360	p.D454N	0.000	NULL	NULL	-	no_errors	CXXC11	HGNC	ENSG00000188011				57	0	0	37	35	48.6111
CAD	0	genome.wustl.edu	37	2	27446503	27446503	+	Silent	SNP	C	C	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	2	27446503	27446503	C	T	SNP	CAD	ENST00000264705	human	ensembl	74_37	+1	known	silent	c.882	p.N294	1.000	pfam_GATASE,tigrfam_CarbamoylP_synth_ssu	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_ssu_N,pfam_Asp/Orn_carbamoyltranf_P-bd,pfam_GATASE,pfam_Asp_carbamoyltransf_Asp/Orn-bd,pfam_CarbamoylP_synth_lsu_oligo,pfam_CarbamoylP_synth_lsu_N,pfam_ATP-grasp_carboxylate-amine,pfam_MGS-like_dom,pfam_Dala_Dala_lig_C,pfam_Amidohydro_1,superfamily_Asp/Orn_carbamoylTrfase,superfamily_CarbamoylP_synth_lsu_oligo,superfamily_CarbamoylP_synth_ssu_N,superfamily_PreATP-grasp_dom,superfamily_MGS-like_dom,superfamily_Metal-dep_hydrolase_composite,smart_MGS-like_dom,pfscan_ATP-grasp,prints_CbamoylP_synth_lsu_CPSase_dom,prints_Asp_carbamoyltransf,prints_Asp/Orn_carbamoylTrfase,tigrfam_CarbamoylP_synth_lsu,tigrfam_CarbamoylP_synth_ssu,tigrfam_Asp_carbamoyltransf	-	no_errors	CAD	HGNC	ENSG00000084774				244	0	0	252	59	18.9711
SNX17	0	genome.wustl.edu	37	2	27597994	27597994	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	2	27597994	27597994	C	A	SNP	SNX17	ENST00000233575	human	ensembl	74_37	+1	known	missense	c.748	p.L250M	1.000	superfamily_FERM_central	pfam_Phox,superfamily_Phox,superfamily_FERM_central,smart_Phox,pfscan_Phox,pfscan_Ras-assoc	-	no_errors	SNX17	HGNC	ENSG00000115234				60	0	0	31	36	53.7313
SLC8A1	0	genome.wustl.edu	37	2	40656585	40656585	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	2	40656585	40656585	T	C	SNP	SLC8A1	ENST00000332839	human	ensembl	74_37	-1	known	missense	c.836	p.E279G	1.000	tigrfam_Na_Ca_Ex	pfam_NaCa_Exmemb,pfam_Calx_beta,smart_Calx_beta,pfscan_DnaJ_domain,prints_Na_Ca_Ex,prints_NaCa_exhngr1,tigrfam_Na_Ca_Ex	-	no_errors	SLC8A1	HGNC	ENSG00000183023				275	1	0.362319	286	82	22.2826
FOXN2	0	genome.wustl.edu	37	2	48602449	48602449	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	2	48602449	48602449	A	G	SNP	FOXN2	ENST00000340553	human	ensembl	74_37	+1	known	missense	c.1163	p.Q388R	0.254	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXN2	HGNC	ENSG00000170802				19	0	0	14	22	61.1111
LHCGR	0	genome.wustl.edu	37	2	48915788	48915788	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	2	48915788	48915788	A	C	SNP	LHCGR	ENST00000294954	human	ensembl	74_37	-1	known	missense	c.1148	p.V383G	0.994	pfam_GPCR_Rhodpsn,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,prints_LSH_rcpt,prints_Gphrmn_rcpt_fam,prints_GPCR_Rhodpsn,prints_TSH_rcpt,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	LHCGR	HGNC	ENSG00000138039				69	0	0	60	16	21.0526
NRXN1	0	genome.wustl.edu	37	2	51255005	51255005	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	2	51255005	51255005	T	G	SNP	NRXN1	ENST00000402717	human	ensembl	74_37	-1	known	missense	c.407	p.K136T	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN1	HGNC	ENSG00000179915				67	0	0	44	17	27.8689
FBXO48	0	genome.wustl.edu	37	2	68691388	68691388	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	2	68691388	68691388	C	A	SNP	FBXO48	ENST00000377957	human	ensembl	74_37	-1	known	missense	c.421	p.D141Y	1.000	NULL	pfam_F-box_dom,superfamily_F-box_dom,smart_F-box_dom,pfscan_F-box_dom	-	no_errors	FBXO48	HGNC	ENSG00000204923				201	0	0	159	102	39.0805
FBXO48	0	genome.wustl.edu	37	2	68691466	68691466	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	2	68691466	68691466	T	C	SNP	FBXO48	ENST00000377957	human	ensembl	74_37	-1	known	missense	c.343	p.K115E	1.000	superfamily_F-box_dom	pfam_F-box_dom,superfamily_F-box_dom,smart_F-box_dom,pfscan_F-box_dom	-	no_errors	FBXO48	HGNC	ENSG00000204923				123	0	0	90	53	37.0629
MPHOSPH10	0	genome.wustl.edu	37	2	71368364	71368364	+	Silent	SNP	T	T	G			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	2	71368364	71368364	T	G	SNP	MPHOSPH10	ENST00000244230	human	ensembl	74_37	+1	known	silent	c.1311	p.A437	0.980	pfam_Mpp10,pirsf_snoRNP_Mpp10	pfam_Mpp10,pirsf_snoRNP_Mpp10	-	no_errors	MPHOSPH10	HGNC	ENSG00000124383				90	0	0	94	27	22.314
DYSF	0	genome.wustl.edu	37	2	71901407	71901407	+	Silent	SNP	C	C	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	2	71901407	71901407	C	T	SNP	DYSF	ENST00000413539	human	ensembl	74_37	+1	known	silent	c.5841	p.F1947	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom	pfam_C2_dom,pfam_Ferlin_B-domain,pfam_FerIin-domain,pfam_Ferlin_A-domain,superfamily_C2_dom,superfamily_MFS_dom_general_subst_transpt,smart_C2_dom,smart_Peroxin/Ferlin,pfscan_C2_dom	-	no_errors	DYSF	HGNC	ENSG00000135636				76	0	0	57	20	25.974
PTCD3	0	genome.wustl.edu	37	2	86361965	86361965	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	2	86361965	86361965	C	T	SNP	PTCD3	ENST00000254630	human	ensembl	74_37	+1	known	nonsense	c.1633	p.Q545*	1.000	NULL	NULL	-	no_errors	PTCD3	HGNC	ENSG00000132300				108	0	0	83	67	44.6667
KIF16B	0	genome.wustl.edu	37	20	16348445	16348445	+	Silent	SNP	C	C	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	20	16348445	16348445	C	T	SNP	KIF16B	ENST00000408042	human	ensembl	74_37	-1	known	silent	c.3525	p.L1175	0.002	NULL	pfam_Kinesin_motor_dom,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	-	no_errors	KIF16B	HGNC	ENSG00000089177				28	0	0	35	7	16.6667
PCSK2	0	genome.wustl.edu	37	20	17389911	17389911	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	20	17389911	17389911	G	T	SNP	PCSK2	ENST00000262545	human	ensembl	74_37	+1	known	missense	c.547	p.A183S	1.000	pfam_Peptidase_S8/S53_dom,superfamily_Peptidase_S8/S53_dom	pfam_Peptidase_S8/S53_dom,pfam_PrprotnconvertsP,superfamily_Peptidase_S8/S53_dom,superfamily_Galactose-bd-like,superfamily_Prot_inh_propept,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK2	HGNC	ENSG00000125851				137	0	0	221	39	15
RRBP1	0	genome.wustl.edu	37	20	17606216	17606216	+	Silent	SNP	G	G	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	20	17606216	17606216	G	A	SNP	RRBP1	ENST00000246043	human	ensembl	74_37	-1	known	silent	c.2995	p.L999	0.660	NULL	pfam_Rib_rcpt_KP,superfamily_Ribosome_recyc_fac_dom	-	no_errors	RRBP1	HGNC	ENSG00000125844				147	0	0	194	21	9.76744
DZANK1	0	genome.wustl.edu	37	20	18432537	18432537	+	Silent	SNP	C	C	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	20	18432537	18432537	C	T	SNP	DZANK1	ENST00000357236	human	ensembl	74_37	-1	known	silent	c.162	p.K54	0.001	NULL	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	DZANK1	HGNC	ENSG00000089091				70	0	0	74	38	33.9286
C20orf26	0	genome.wustl.edu	37	20	20150036	20150036	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	20	20150036	20150036	A	C	SNP	C20orf26	ENST00000245957	human	ensembl	74_37	+1	known	missense	c.1317	p.K439N	0.370	NULL	superfamily_Acyl_CoA_acyltransferase	-	no_errors	C20orf26	HGNC	ENSG00000089101				85	0	0	136	27	16.5644
CST8	0	genome.wustl.edu	37	20	23472508	23472508	+	Silent	SNP	G	G	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	20	23472508	23472508	G	T	SNP	CST8	ENST00000246012	human	ensembl	74_37	+1	known	silent	c.204	p.V68	0.017	pfam_Prot_inh_cystat,smart_Prot_inh_cystat	pfam_Prot_inh_cystat,smart_Prot_inh_cystat	-	no_errors	CST8	HGNC	ENSG00000125815				88	0	0	108	22	16.9231
DEFB119	0	genome.wustl.edu	37	20	29976843	29976843	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	20	29976843	29976843	A	T	SNP	DEFB119	ENST00000376315	human	ensembl	74_37	-1	known	missense	c.252	p.N84K	0.041	NULL	superfamily_Scorpion_toxin-like	-	no_errors	DEFB119	HGNC	ENSG00000180483				49	0	0	58	7	10.7692
DNMT3B	0	genome.wustl.edu	37	20	31388715	31388715	+	Silent	SNP	C	C	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	20	31388715	31388715	C	T	SNP	DNMT3B	ENST00000328111	human	ensembl	74_37	+1	known	silent	c.1980	p.A660	0.999	pfam_C5_MeTfrase	pfam_PWWP_dom,pfam_C5_MeTfrase,superfamily_Znf_FYVE_PHD,smart_PWWP_dom,pfscan_PWWP_dom	-	no_errors	DNMT3B	HGNC	ENSG00000088305				117	0	0	183	37	16.8182
BPIFB6	0	genome.wustl.edu	37	20	31627289	31627289	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	20	31627289	31627289	G	A	SNP	BPIFB6	ENST00000349552	human	ensembl	74_37	+1	known	missense	c.1037	p.R346Q	0.000	pfam_Lipid-bd_serum_glycop_C,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_C	pfam_Lipid-bd_serum_glycop_N,pfam_Lipid-bd_serum_glycop_C,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_C	-	no_errors	BPIFB6	HGNC	ENSG00000167104				107	1	0.925926	98	50	33.7838
SAMHD1	0	genome.wustl.edu	37	20	35526364	35526364	+	Splice_Site	SNP	T	T	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	20	35526364	35526364	T	A	SNP	SAMHD1	ENST00000262878	human	ensembl	74_37	-1	known	splice_site	c.1609-2	e15-2	0.996	-	-	-	no_errors	SAMHD1	HGNC	ENSG00000101347				95	0	0	114	62	35.2273
KIAA1755	0	genome.wustl.edu	37	20	36870039	36870039	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	20	36870039	36870039	C	A	SNP	KIAA1755	ENST00000279024	human	ensembl	74_37	-1	known	missense	c.494	p.C165F	1.000	NULL	superfamily_CRAL-TRIO_dom	-	no_errors	KIAA1755	HGNC	ENSG00000149633				103	0	0	163	33	16.8367
PTPRT	0	genome.wustl.edu	37	20	40713354	40713354	+	Silent	SNP	G	G	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	20	40713354	40713354	G	A	SNP	PTPRT	ENST00000373198	human	ensembl	74_37	-1	known	silent	c.4161	p.D1387	0.815	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRT	HGNC	ENSG00000196090				57	0	0	64	18	21.9512
SEMG1	0	genome.wustl.edu	37	20	43837264	43837264	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	20	43837264	43837264	A	C	SNP	SEMG1	ENST00000372781	human	ensembl	74_37	+1	known	missense	c.1326	p.E442D	0.000	pfam_Semenogelin	pfam_Semenogelin	-	no_errors	SEMG1	HGNC	ENSG00000124233				185	0	0	227	121	34.7701
SALL4	0	genome.wustl.edu	37	20	50406883	50406883	+	Silent	SNP	G	G	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	20	50406883	50406883	G	A	SNP	SALL4	ENST00000217086	human	ensembl	74_37	-1	known	silent	c.2139	p.P713	0.002	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SALL4	HGNC	ENSG00000101115				45	0	0	67	28	29.4737
CYP24A1	0	genome.wustl.edu	37	20	52786173	52786173	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	20	52786173	52786173	C	G	SNP	CYP24A1	ENST00000216862	human	ensembl	74_37	-1	known	missense	c.598	p.V200L	0.995	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_CYP24A_mit	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_CYP24A_mit,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450	-	no_errors	CYP24A1	HGNC	ENSG00000019186				74	0	0	125	32	20.3822
EDN3	0	genome.wustl.edu	37	20	57896115	57896115	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	20	57896115	57896115	C	T	SNP	EDN3	ENST00000337938	human	ensembl	74_37	+1	known	missense	c.409	p.R137W	0.867	NULL	pfam_Endothln-like_toxin,smart_Endothln-like_toxin,prints_Bibrotoxin/Sarafotoxin-D	-	no_errors	EDN3	HGNC	ENSG00000124205				86	0	0	127	17	11.8056
SYCP2	0	genome.wustl.edu	37	20	58475227	58475227	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	20	58475227	58475227	C	A	SNP	SYCP2	ENST00000357552	human	ensembl	74_37	-1	known	missense	c.1370	p.S457I	0.006	NULL	NULL	-	no_errors	SYCP2	HGNC	ENSG00000196074				74	0	0	131	15	10.274
COL9A3	0	genome.wustl.edu	37	20	61467870	61467870	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	20	61467870	61467870	G	T	SNP	COL9A3	ENST00000343916	human	ensembl	74_37	+1	known	missense	c.1589	p.G530V	0.999	NULL	pfam_Collagen	-	no_errors	COL9A3	HGNC	ENSG00000092758				21	0	0	28	3	9.67742
SLC17A9	0	genome.wustl.edu	37	20	61598822	61598822	+	Silent	SNP	G	G	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	20	61598822	61598822	G	C	SNP	SLC17A9	ENST00000370351	human	ensembl	74_37	+1	known	silent	c.1281	p.V427	1.000	NULL	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC17A9	HGNC	ENSG00000101194				129	0	0	168	32	16
PLCB1	0	genome.wustl.edu	37	20	8709793	8709793	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	20	8709793	8709793	G	T	SNP	PLCB1	ENST00000338037	human	ensembl	74_37	+1	known	missense	c.1860	p.Q620H	1.000	pirsf_PLC-beta,pfam_PLipase_C_Pinositol-sp_Y,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C,pfscan_PLipase_C_Pinositol-sp_Y	pirsf_PLC-beta,pfam_PLC-beta_C,pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,prints_Pinositol_PLipase_C,pfscan_C2_dom,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCB1	HGNC	ENSG00000182621				97	0	0	166	41	19.8068
DYRK1A	0	genome.wustl.edu	37	21	38865409	38865409	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	21	38865409	38865409	G	C	SNP	DYRK1A	ENST00000398960	human	ensembl	74_37	+1	known	missense	c.1042	p.G348R	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	DYRK1A	HGNC	ENSG00000157540				123	0	0	42	31	42.4658
TBX1	0	genome.wustl.edu	37	22	19770491	19770491	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	22	19770491	19770491	G	T	SNP	TBX1	ENST00000359500	human	ensembl	74_37	+1	known	missense	c.1065	p.K355N	0.002	NULL	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,prints_TF_T-box,pfscan_TF_T-box	-	no_errors	TBX1	HGNC	ENSG00000184058				140	0	0	81	92	53.1792
TRMT2A	0	genome.wustl.edu	37	22	20100088	20100088	+	Nonstop_Mutation	SNP	A	A	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	22	20100088	20100088	A	C	SNP	TRMT2A	ENST00000252136	human	ensembl	74_37	-1	known	nonstop	c.1876	p.*626E	0.001	NULL	pfam_U5_MeTrfase,pfam_PCMT,pfam_Small_mtfrase_dom,pfam_RNA_methylase_dom,pfam_RNA_MeTrfase_RsmD,pfam_Methyltransf_11,pfam_tRNA_(Gua-N-7)_MeTrfase,pfam_UbiE/COQ5_MeTrFase,pfscan_RRM_dom	-	no_errors	TRMT2A	HGNC	ENSG00000099899				29	0	0	16	11	40.7407
RAB36	0	genome.wustl.edu	37	22	23488843	23488843	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	22	23488843	23488843	C	T	SNP	RAB36	ENST00000263116	human	ensembl	74_37	+1	known	missense	c.238	p.R80C	1.000	NULL	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB36	HGNC	ENSG00000100228				71	0	0	62	10	13.8889
POM121L9P	0	genome.wustl.edu	37	22	24656895	24656895	+	RNA	SNP	C	C	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	22	24656895	24656895	C	A	SNP	POM121L9P	ENST00000414583	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.009	-	-	-	no_errors	POM121L9P	HGNC	ENSG00000128262				22	0	0	23	4	14.8148
SGSM1	0	genome.wustl.edu	37	22	25320202	25320202	+	Silent	SNP	C	C	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	22	25320202	25320202	C	T	SNP	SGSM1	ENST00000400359	human	ensembl	74_37	+1	known	silent	c.3408	p.D1136	1.000	superfamily_Rab-GTPase-TBC_dom	pfam_Run,pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Run,smart_Rab-GTPase-TBC_dom,pfscan_Run,pfscan_Rab-GTPase-TBC_dom	-	no_errors	SGSM1	HGNC	ENSG00000167037				54	0	0	55	10	15.3846
CRYBB1	0	genome.wustl.edu	37	22	26995587	26995587	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	22	26995587	26995587	T	C	SNP	CRYBB1	ENST00000215939	human	ensembl	74_37	-1	known	missense	c.626	p.E209G	1.000	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	CRYBB1	HGNC	ENSG00000100122				63	0	0	48	12	20
TCN2	0	genome.wustl.edu	37	22	31010467	31010467	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	22	31010467	31010467	C	T	SNP	TCN2	ENST00000215838	human	ensembl	74_37	+1	known	missense	c.559	p.H187Y	0.000	pfam_Cbl-bd_transpt_euk,superfamily_Terpenoid_cyclase/PrenylTrfase	pfam_Cbl-bd_transpt_euk,superfamily_Terpenoid_cyclase/PrenylTrfase	-	no_errors	TCN2	HGNC	ENSG00000185339				60	0	0	46	8	14.8148
APOL5	0	genome.wustl.edu	37	22	36123079	36123079	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	22	36123079	36123079	A	T	SNP	APOL5	ENST00000249044	human	ensembl	74_37	+1	known	missense	c.964	p.R322W	0.000	pfam_ApoL	pfam_ApoL	-	no_errors	APOL5	HGNC	ENSG00000128313				45	0	0	25	9	26.4706
CSF2RB	0	genome.wustl.edu	37	22	37322200	37322200	+	Silent	SNP	C	C	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	22	37322200	37322200	C	T	SNP	CSF2RB	ENST00000262825	human	ensembl	74_37	+1	known	silent	c.372	p.T124	0.000	pirsf_IL3_rcpt_beta,superfamily_Fibronectin_type3	pirsf_IL3_rcpt_beta,pfam_Fibronectin_type3,pfam_IL-6_rcpt_alpha-bd,pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	CSF2RB	HGNC	ENSG00000100368				79	0	0	56	14	20
CACNA1I	0	genome.wustl.edu	37	22	40037134	40037134	+	Nonsense_Mutation	SNP	A	A	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	22	40037134	40037134	A	T	SNP	CACNA1I	ENST00000336649	human	ensembl	74_37	+1	known	nonsense	c.1003	p.K335*	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_VDCCAlpha1	-	no_errors	CACNA1I	HGNC	ENSG00000100346				84	0	0	58	49	45.7944
CACNA1I	0	genome.wustl.edu	37	22	40066108	40066108	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	22	40066108	40066108	C	A	SNP	CACNA1I	ENST00000336649	human	ensembl	74_37	+1	known	missense	c.4278	p.F1426L	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_VDCCAlpha1	-	no_errors	CACNA1I	HGNC	ENSG00000100346				272	0	0	248	82	24.8485
TTLL8	0	genome.wustl.edu	37	22	50488550	50488550	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	22	50488550	50488550	C	T	SNP	TTLL8	ENST00000266182	human	ensembl	74_37	-1	known	missense	c.178	p.A60T	0.001	NULL	pfam_TTL/TTLL_fam	-	no_errors	TTLL8	HGNC	ENSG00000138892				25	0	0	23	3	11.5385
CD200	0	genome.wustl.edu	37	3	112063822	112063822	+	Silent	SNP	C	C	G			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	3	112063822	112063822	C	G	SNP	CD200	ENST00000473539	human	ensembl	74_37	+1	known	silent	c.183	p.T61	0.998	smart_Ig_sub,pfscan_Ig-like_dom	pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	CD200	HGNC	ENSG00000091972				66	0	0	45	16	26.2295
DRD3	0	genome.wustl.edu	37	3	113858501	113858501	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	3	113858501	113858501	A	T	SNP	DRD3	ENST00000383673	human	ensembl	74_37	-1	known	missense	c.569	p.I190N	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Dopamine_D3_rcpt,prints_GPCR_Rhodpsn,prints_Dopamine_rcpt	-	no_errors	DRD3	HGNC	ENSG00000151577				126	0	0	93	14	13.0841
PARP14	0	genome.wustl.edu	37	3	122420095	122420095	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	3	122420095	122420095	G	C	SNP	PARP14	ENST00000474629	human	ensembl	74_37	+1	known	missense	c.2694	p.R898S	0.001	pfam_Macro_dom,smart_Macro_dom,pfscan_Macro_dom	pfam_Macro_dom,pfam_Poly(ADP-ribose)pol_cat_dom,pfam_WWE-dom,smart_Macro_dom,pfscan_Macro_dom,pfscan_WWE-dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP14	HGNC	ENSG00000173193				21	0	0	19	7	26.9231
CNTN6	0	genome.wustl.edu	37	3	1339586	1339586	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	3	1339586	1339586	A	T	SNP	CNTN6	ENST00000350110	human	ensembl	74_37	+1	known	missense	c.672	p.E224D	0.969	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CNTN6	HGNC	ENSG00000134115				106	0	0	72	32	30.7692
SKIL	0	genome.wustl.edu	37	3	170110195	170110195	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	3	170110195	170110195	C	G	SNP	SKIL	ENST00000259119	human	ensembl	74_37	+1	known	missense	c.2045	p.A682G	0.990	NULL	pfam_c-SKI_SMAD4-bd_dom,pfam_Transform_Ski,superfamily_SAND_dom-like,superfamily_DNA-bd_dom_put	-	no_errors	SKIL	HGNC	ENSG00000136603				62	0	0	19	31	62
NLGN1	0	genome.wustl.edu	37	3	173998882	173998882	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	3	173998882	173998882	T	G	SNP	NLGN1	ENST00000401917	human	ensembl	74_37	+1	known	missense	c.2381	p.L794R	1.000	NULL	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Neuroligin	-	no_errors	NLGN1	HGNC	ENSG00000169760				110	0	0	30	53	63.8554
PARL	0	genome.wustl.edu	37	3	183602604	183602604	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	3	183602604	183602604	A	G	SNP	PARL	ENST00000317096	human	ensembl	74_37	-1	known	missense	c.31	p.W11R	1.000	NULL	pfam_Peptidase_S54_rhomboid_dom	-	no_errors	PARL	HGNC	ENSG00000175193				29	0	0	11	8	42.1053
CEP19	0	genome.wustl.edu	37	3	196434546	196434546	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	3	196434546	196434546	A	C	SNP	CEP19	ENST00000409690	human	ensembl	74_37	-1	known	missense	c.380	p.L127R	1.000	NULL	NULL	-	no_errors	CEP19	HGNC	ENSG00000174007				80	0	0	75	23	23.4694
RARB	0	genome.wustl.edu	37	3	25611286	25611286	+	Silent	SNP	T	T	G			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	3	25611286	25611286	T	G	SNP	RARB	ENST00000404969	human	ensembl	74_37	+1	known	silent	c.507	p.T169	0.998	superfamily_Nucl_hormone_rcpt_ligand-bd,prints_Retinoid-X_rcpt/HNF4	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Retinoic_acid_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Nuc_orph_rcpt,prints_Retinoid-X_rcpt/HNF4	-	no_errors	RARB	HGNC	ENSG00000077092				42	0	0	27	17	38.6364
EOMES	0	genome.wustl.edu	37	3	27759208	27759208	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	3	27759208	27759208	C	T	SNP	EOMES	ENST00000449599	human	ensembl	74_37	-1	known	missense	c.1471	p.V491I	1.000	NULL	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	EOMES	HGNC	ENSG00000163508				94	0	0	24	37	60.6557
ZNF197	0	genome.wustl.edu	37	3	44672628	44672628	+	Silent	SNP	A	A	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	3	44672628	44672628	A	T	SNP	ZNF197	ENST00000344387	human	ensembl	74_37	+1	known	silent	c.465	p.V155	0.000	NULL	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF197	HGNC	ENSG00000186448				75	0	0	25	47	65.2778
CCR9	0	genome.wustl.edu	37	3	45942859	45942859	+	Silent	SNP	C	C	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	3	45942859	45942859	C	T	SNP	CCR9	ENST00000357632	human	ensembl	74_37	+1	known	silent	c.579	p.S193	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Chemokine_CCR7	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Chemokine_CCR9,prints_Chemokine_rcpt,prints_Chemokine_CCR7,prints_ATII_rcpt,prints_Chemokine_CCRL1,prints_Chemokine_CXCR4	-	no_errors	CCR9	HGNC	ENSG00000173585				73	0	0	25	35	58.3333
SEMA3F	0	genome.wustl.edu	37	3	50211510	50211510	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	3	50211510	50211510	G	A	SNP	SEMA3F	ENST00000002829	human	ensembl	74_37	+1	known	missense	c.299	p.R100H	1.000	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Semap_dom,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_Ig_sub,smart_Ig_sub2,pfscan_Semap_dom,pfscan_Ig-like_dom	-	no_errors	SEMA3F	HGNC	ENSG00000001617				68	0	0	21	43	67.1875
DNAH1	0	genome.wustl.edu	37	3	52434400	52434400	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	3	52434400	52434400	C	T	SNP	DNAH1	ENST00000420323	human	ensembl	74_37	+1	known	missense	c.12736	p.H4246Y	0.000	pfam_Dynein_heavy_dom	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase	-	no_errors	DNAH1	HGNC	ENSG00000114841				178	0	0	112	41	26.7974
ITIH1	0	genome.wustl.edu	37	3	52820319	52820319	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	3	52820319	52820319	A	T	SNP	ITIH1	ENST00000273283	human	ensembl	74_37	+1	known	missense	c.1602	p.Q534H	0.995	NULL	pfam_ITI_HC_C,pfam_VIT,pfam_VWF_A,superfamily_PsdUridine_synth_cat_dom,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	ITIH1	HGNC	ENSG00000055957				10	0	0	1	2	66.6667
CADM2	0	genome.wustl.edu	37	3	85932479	85932479	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	3	85932479	85932479	T	A	SNP	CADM2	ENST00000405615	human	ensembl	74_37	+1	known	missense	c.256	p.W86R	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_CD80_C2-set,pfam_Ig_V-set,pfam_Ig_C1-set,smart_Ig_sub,smart_Ig_sub2,smart_Neurexin-like,pfscan_Ig-like_dom	-	no_errors	CADM2	HGNC	ENSG00000175161				42	0	0	17	20	54.0541
SETD5	0	genome.wustl.edu	37	3	9517681	9517681	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	3	9517681	9517681	A	G	SNP	SETD5	ENST00000402198	human	ensembl	74_37	+1	known	missense	c.4235	p.Q1412R	1.000	NULL	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	-	no_errors	SETD5	HGNC	ENSG00000168137				47	0	0	29	10	25.641
DAPP1	0	genome.wustl.edu	37	4	100756882	100756882	+	Silent	SNP	G	G	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	4	100756882	100756882	G	C	SNP	DAPP1	ENST00000512369	human	ensembl	74_37	+1	known	silent	c.204	p.G68	0.019	pfam_SH2,smart_SH2,pfscan_SH2,prints_SH2	pfam_SH2,pfam_Pleckstrin_homology,smart_SH2,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_SH2,prints_SH2	-	no_errors	DAPP1	HGNC	ENSG00000070190				68	0	0	21	20	48.7805
MMAA	0	genome.wustl.edu	37	4	146575206	146575206	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	4	146575206	146575206	G	A	SNP	MMAA	ENST00000281317	human	ensembl	74_37	+1	known	missense	c.880	p.D294N	1.000	pfam_ArgK,superfamily_P-loop_NTPase,tigrfam_ArgK	pfam_ArgK,pfam_CobW/HypB/UreG_dom,superfamily_P-loop_NTPase,tigrfam_ArgK	-	no_errors	MMAA	HGNC	ENSG00000151611				156	0	0	123	43	25.9036
GLRB	0	genome.wustl.edu	37	4	158057967	158057967	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	4	158057967	158057967	C	T	SNP	GLRB	ENST00000264428	human	ensembl	74_37	+1	known	missense	c.539	p.T180I	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_Glycine_rcpt_B,prints_GABAA_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GLRB	HGNC	ENSG00000109738				71	0	0	62	15	19.4805
FSTL5	0	genome.wustl.edu	37	4	162508606	162508606	+	Splice_Site	SNP	C	C	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	4	162508606	162508606	C	T	SNP	FSTL5	ENST00000306100	human	ensembl	74_37	-1	known	splice_site	c.1015+1	e7+1	1.000	-	-	-	no_errors	FSTL5	HGNC	ENSG00000168843				108	0	0	67	31	31.6327
CEP44	0	genome.wustl.edu	37	4	175220298	175220298	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	4	175220298	175220298	G	A	SNP	CEP44	ENST00000426172	human	ensembl	74_37	+1	known	missense	c.26	p.S9N	1.000	NULL	NULL	-	no_errors	CEP44	HGNC	ENSG00000164118				77	0	0	27	34	55.7377
PDE6B	0	genome.wustl.edu	37	4	657980	657980	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	4	657980	657980	C	T	SNP	PDE6B	ENST00000496514	human	ensembl	74_37	+1	known	missense	c.2099	p.S700F	0.997	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE6B	HGNC	ENSG00000133256				71	0	0	24	51	68
UGT2B28	0	genome.wustl.edu	37	4	70156402	70156402	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	4	70156402	70156402	T	A	SNP	UGT2B28	ENST00000335568	human	ensembl	74_37	+1	known	missense	c.1183	p.L395M	0.231	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT2B28	HGNC	ENSG00000135226				144	0	0	98	58	37.1795
SLC4A4	0	genome.wustl.edu	37	4	72319339	72319339	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	4	72319339	72319339	G	A	SNP	SLC4A4	ENST00000425175	human	ensembl	74_37	+1	known	missense	c.1450	p.A484T	1.000	pfam_HCO3_transpt_C,prints_HCO3_transpt_euk,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Na/HCO3_transpt,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A4	HGNC	ENSG00000080493				137	0	0	90	41	31.2977
ADAMTS3	0	genome.wustl.edu	37	4	73185183	73185183	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	4	73185183	73185183	C	A	SNP	ADAMTS3	ENST00000286657	human	ensembl	74_37	-1	known	missense	c.1218	p.M406I	1.000	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B	-	no_errors	ADAMTS3	HGNC	ENSG00000156140				42	0	0	27	9	25
SORCS2	0	genome.wustl.edu	37	4	7640122	7640122	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	4	7640122	7640122	C	A	SNP	SORCS2	ENST00000507866	human	ensembl	74_37	+1	known	missense	c.716	p.A239D	0.868	smart_VPS10	pfam_PKD_dom,superfamily_PKD_dom,smart_VPS10,smart_PKD/Chitinase_dom,pfscan_PKD_dom	-	no_errors	SORCS2	HGNC	ENSG00000184985				57	0	0	95	13	12.037
CPZ	0	genome.wustl.edu	37	4	8620178	8620178	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	4	8620178	8620178	T	C	SNP	CPZ	ENST00000360986	human	ensembl	74_37	+1	known	missense	c.1526	p.V509A	0.495	superfamily_CarboxyPept-like_regulatory,smart_Peptidase_M14	pfam_Peptidase_M14,pfam_Frizzled_dom,superfamily_Frizzled_dom,superfamily_CarboxyPept-like_regulatory,smart_Frizzled_dom,smart_Peptidase_M14,prints_Peptidase_M14,pfscan_Frizzled_dom	-	no_errors	CPZ	HGNC	ENSG00000109625				60	0	0	30	52	63.4146
APC	0	genome.wustl.edu	37	5	112174602	112174602	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	5	112174602	112174602	C	A	SNP	APC	ENST00000257430	human	ensembl	74_37	+1	known	nonsense	c.3311	p.S1104*	1.000	NULL	pfam_APC_basic_dom,pfam_EB1-bd,pfam_APC_Cys-rich_rpt,pfam_Armadillo,pfam_APC_dom,pfam_SAMP,pfam_APC_15aa_rpt,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	APC	HGNC	ENSG00000134982				106	0	0	31	56	64.3678
ZNF608	0	genome.wustl.edu	37	5	123983911	123983911	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	5	123983911	123983911	G	T	SNP	ZNF608	ENST00000306315	human	ensembl	74_37	-1	known	missense	c.2166	p.N722K	0.964	NULL	NULL	-	no_errors	ZNF608	HGNC	ENSG00000168916				35	0	0	19	9	32.1429
IRF1	0	genome.wustl.edu	37	5	131822029	131822029	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	5	131822029	131822029	T	A	SNP	IRF1	ENST00000245414	human	ensembl	74_37	-1	known	missense	c.581	p.D194V	0.724	pirsf_Interferon_reg_fac-1/2	pfam_Interferon_reg_fact_DNA-bd_dom,smart_Interferon_reg_fact_DNA-bd_dom,pirsf_Interferon_reg_fac-1/2,prints_Interferon_reg_fact_DNA-bd_dom	-	no_errors	IRF1	HGNC	ENSG00000125347				101	0	0	53	25	32.0513
PCDH1	0	genome.wustl.edu	37	5	141243652	141243652	+	Silent	SNP	G	G	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	5	141243652	141243652	G	T	SNP	PCDH1	ENST00000287008	human	ensembl	74_37	-1	known	silent	c.2244	p.V748	0.996	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH1	HGNC	ENSG00000156453				36	0	0	9	26	74.2857
TENM2	0	genome.wustl.edu	37	5	167545399	167545399	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	5	167545399	167545399	A	T	SNP	TENM2	ENST00000518659	human	ensembl	74_37	+1	known	missense	c.1916	p.Q639L	1.000	smart_EG-like_dom,pfscan_EG-like_dom	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,superfamily_Quino_amine_DH_bsu,superfamily_ConA-like_lec_gl_sf,superfamily_Cytokine_IL1-like,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	TENM2	HGNC	ENSG00000145934				247	0	0	77	121	61.1111
CDHR2	0	genome.wustl.edu	37	5	176016370	176016370	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	5	176016370	176016370	C	A	SNP	CDHR2	ENST00000261944	human	ensembl	74_37	+1	known	nonsense	c.3048	p.Y1016*	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDHR2	HGNC	ENSG00000074276				219	0	0	113	39	25.6579
PDLIM7	0	genome.wustl.edu	37	5	176919612	176919612	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	5	176919612	176919612	C	T	SNP	PDLIM7	ENST00000355841	human	ensembl	74_37	-1	known	missense	c.163	p.G55S	0.991	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_Znf_LIM,pfam_PDZ,superfamily_PDZ,smart_PDZ,smart_Znf_LIM,pfscan_Znf_LIM,pfscan_PDZ	-	no_errors	PDLIM7	HGNC	ENSG00000196923				82	0	0	19	40	67.7966
MAPK9	0	genome.wustl.edu	37	5	179663398	179663398	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	5	179663398	179663398	C	T	SNP	MAPK9	ENST00000452135	human	ensembl	74_37	-1	known	missense	c.1261	p.E421K	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_MAPK_JNK	-	no_errors	MAPK9	HGNC	ENSG00000050748				50	0	0	27	12	30.7692
PRDM9	0	genome.wustl.edu	37	5	23509701	23509701	+	Silent	SNP	A	A	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	5	23509701	23509701	A	T	SNP	PRDM9	ENST00000296682	human	ensembl	74_37	+1	known	silent	c.192	p.I64	0.766	superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	pfam_Znf_C2H2,pfam_SSXRD_motif,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	PRDM9	HGNC	ENSG00000164256				78	0	0	68	42	38.1818
IL7R	0	genome.wustl.edu	37	5	35857145	35857145	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	5	35857145	35857145	T	A	SNP	IL7R	ENST00000303115	human	ensembl	74_37	+1	known	missense	c.66	p.S22R	1.000	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3	-	no_errors	IL7R	HGNC	ENSG00000168685				145	0	0	122	66	35.1064
C6	0	genome.wustl.edu	37	5	41149516	41149516	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	5	41149516	41149516	T	G	SNP	C6	ENST00000263413	human	ensembl	74_37	-1	known	missense	c.2450	p.K817T	0.180	pfam_Kazal_dom,smart_FacI_MAC	pfam_MACPF,pfam_Sushi_SCR_CCP,pfam_Thrombospondin_1_rpt,pfam_LDrepeatLR_classA_rpt,pfam_Kazal_dom,superfamily_Sushi_SCR_CCP,superfamily_Thrombospondin_1_rpt,superfamily_LDrepeatLR_classA_rpt,smart_Thrombospondin_1_rpt,smart_LDrepeatLR_classA_rpt,smart_MACPF,smart_Sushi_SCR_CCP,smart_FacI_MAC,prints_MAC_perforin,pfscan_LDrepeatLR_classA_rpt,pfscan_Sushi_SCR_CCP,pfscan_Thrombospondin_1_rpt	-	no_errors	C6	HGNC	ENSG00000039537				136	0	0	158	93	37.0518
ISL1	0	genome.wustl.edu	37	5	50685698	50685698	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	5	50685698	50685698	C	T	SNP	ISL1	ENST00000230658	human	ensembl	74_37	+1	known	missense	c.697	p.R233W	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Znf_LIM,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeobox_dom,pfscan_Znf_LIM,pfscan_Homeobox_dom	-	no_errors	ISL1	HGNC	ENSG00000016082				36	0	0	43	3	6.52174
SLC38A9	0	genome.wustl.edu	37	5	54968437	54968437	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	5	54968437	54968437	C	G	SNP	SLC38A9	ENST00000318672	human	ensembl	74_37	-1	known	missense	c.200	p.R67T	1.000	NULL	pfam_AA_transpt_TM	-	no_errors	SLC38A9	HGNC	ENSG00000177058				94	0	0	40	54	57.4468
RASGRF2	0	genome.wustl.edu	37	5	80381675	80381675	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	5	80381675	80381675	C	T	SNP	RASGRF2	ENST00000265080	human	ensembl	74_37	+1	known	missense	c.1216	p.H406Y	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_Ras_GEF_dom,superfamily_DH-domain,smart_Pleckstrin_homology,smart_DH-domain,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_DH-domain,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGRF2	HGNC	ENSG00000113319				96	0	0	42	52	55.3191
GPR98	0	genome.wustl.edu	37	5	89948276	89948276	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	5	89948276	89948276	A	C	SNP	GPR98	ENST00000405460	human	ensembl	74_37	+1	known	missense	c.3530	p.N1177T	0.000	NULL	pfam_Calx_beta,pfam_EPTP,pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Gal_Oxase/kelch_b-propeller,smart_Calx_beta,pfscan_EAR,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR98	HGNC	ENSG00000164199				59	0	0	20	44	68.75
HDAC2	0	genome.wustl.edu	37	6	114274551	114274551	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	6	114274551	114274551	C	T	SNP	HDAC2	ENST00000398283	human	ensembl	74_37	-1	known	missense	c.811	p.D271N	1.000	pfam_His_deacetylse_dom,prints_His_deacetylse	pfam_His_deacetylse_dom,prints_His_deacetylse_1,prints_His_deacetylse	-	no_errors	HDAC2	HGNC	ENSG00000196591				73	0	0	56	35	38.4615
TSPYL1	0	genome.wustl.edu	37	6	116599805	116599805	+	Nonsense_Mutation	SNP	T	T	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	6	116599805	116599805	T	A	SNP	TSPYL1	ENST00000368608	human	ensembl	74_37	-1	known	nonsense	c.1189	p.K397*	1.000	pfam_NAP_family	pfam_NAP_family	-	no_errors	TSPYL1	HGNC	ENSG00000189241				48	0	0	47	16	25.3968
KPNA5	0	genome.wustl.edu	37	6	117013488	117013488	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	6	117013488	117013488	G	A	SNP	KPNA5	ENST00000356348	human	ensembl	74_37	+1	known	missense	c.273	p.M91I	1.000	pfam_Importin-a_IBB,superfamily_ARM-type_fold	pfam_Armadillo,pfam_Importin-a_IBB,pfam_HEAT,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo,pfscan_Importin-a_IBB	-	no_errors	KPNA5	HGNC	ENSG00000196911				63	0	0	93	7	7
ADTRP	0	genome.wustl.edu	37	6	11723593	11723593	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	6	11723593	11723593	T	G	SNP	ADTRP	ENST00000379413	human	ensembl	74_37	-1	known	missense	c.647	p.H216P	1.000	pfam_Far-17a_AIG1	pfam_Far-17a_AIG1	-	no_errors	ADTRP	HGNC	ENSG00000111863				186	0	0	141	26	15.5689
HIVEP1	0	genome.wustl.edu	37	6	12121047	12121047	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	6	12121047	12121047	C	G	SNP	HIVEP1	ENST00000379388	human	ensembl	74_37	+1	known	missense	c.1019	p.S340C	0.925	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP1	HGNC	ENSG00000095951				164	0	0	164	44	21.1538
NCOA7	0	genome.wustl.edu	37	6	126249876	126249876	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	6	126249876	126249876	G	C	SNP	NCOA7	ENST00000368357	human	ensembl	74_37	+1	known	missense	c.2788	p.D930H	1.000	pfam_TLDc,smart_TLDc	pfam_TLDc,pfam_LysM_dom,pfam_GRAM,smart_LysM_dom,smart_TLDc	-	no_errors	NCOA7	HGNC	ENSG00000111912				72	0	0	67	22	24.7191
LAMA2	0	genome.wustl.edu	37	6	129781441	129781441	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	6	129781441	129781441	G	A	SNP	LAMA2	ENST00000421865	human	ensembl	74_37	+1	known	missense	c.6964	p.E2322K	1.000	superfamily_ConA-like_lec_gl_sf,pfscan_Laminin_G	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_B_type_IV,pfam_Laminin_II,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,superfamily_t-SNARE,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA2	HGNC	ENSG00000196569				79	0	0	52	35	40.2299
ARHGAP18	0	genome.wustl.edu	37	6	129921797	129921797	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	6	129921797	129921797	A	C	SNP	ARHGAP18	ENST00000368149	human	ensembl	74_37	-1	known	missense	c.1562	p.L521R	1.000	superfamily_Rho_GTPase_activation_prot,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP18	HGNC	ENSG00000146376				57	0	0	61	13	17.5676
TBC1D7	0	genome.wustl.edu	37	6	13321205	13321205	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	6	13321205	13321205	C	A	SNP	TBC1D7	ENST00000356436	human	ensembl	74_37	-1	known	nonsense	c.316	p.E106*	0.987	superfamily_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D7	HGNC	ENSG00000145979				205	0	0	183	51	21.7949
PEX3	0	genome.wustl.edu	37	6	143800222	143800222	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	6	143800222	143800222	T	G	SNP	PEX3	ENST00000367591	human	ensembl	74_37	+1	known	missense	c.828	p.F276L	1.000	pfam_Peroxin-3	pfam_Peroxin-3	-	no_errors	PEX3	HGNC	ENSG00000034693				53	0	0	57	13	18.5714
TAB2	0	genome.wustl.edu	37	6	149700628	149700628	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	6	149700628	149700628	G	A	SNP	TAB2	ENST00000286332	human	ensembl	74_37	+1	known	missense	c.1577	p.G526E	1.000	NULL	pfam_CUE,pfam_Znf_RanBP2,smart_CUE,smart_Znf_RanBP2,pfscan_CUE,pfscan_Znf_RanBP2	-	no_errors	TAB2	HGNC	ENSG00000055208				129	0	0	124	10	7.46269
SCAF8	0	genome.wustl.edu	37	6	155154200	155154200	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	6	155154200	155154200	G	T	SNP	SCAF8	ENST00000367186	human	ensembl	74_37	+1	known	missense	c.3685	p.D1229Y	1.000	NULL	pfam_RNA_pol_II-bd,pfam_RRM_dom,superfamily_ENTH_VHS,smart_CID_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	SCAF8	HGNC	ENSG00000213079				75	0	0	66	14	17.5
SYNJ2	0	genome.wustl.edu	37	6	158484821	158484821	+	Splice_Site	SNP	A	A	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	6	158484821	158484821	A	C	SNP	SYNJ2	ENST00000355585	human	ensembl	74_37	+1	known	splice_site	c.1128-2	e9-2	1.000	-	-	-	no_errors	SYNJ2	HGNC	ENSG00000078269				106	0	0	67	68	50.3704
IGF2R	0	genome.wustl.edu	37	6	160453727	160453727	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	6	160453727	160453727	C	T	SNP	IGF2R	ENST00000356956	human	ensembl	74_37	+1	known	missense	c.1027	p.P343S	0.975	pfam_CIMR,superfamily_Man6P_isomerase_rcpt-bd_dom	pfam_CIMR,pfam_FN_type2_col-bd,superfamily_Man6P_isomerase_rcpt-bd_dom,superfamily_Kringle-like,smart_FN_type2_col-bd,pfscan_FN_type2_col-bd	-	no_errors	IGF2R	HGNC	ENSG00000197081				105	0	0	89	22	19.8198
SLC22A3	0	genome.wustl.edu	37	6	160863900	160863900	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	6	160863900	160863900	C	T	SNP	SLC22A3	ENST00000392145	human	ensembl	74_37	+1	known	nonsense	c.1399	p.R467*	1.000	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	-	no_errors	SLC22A3	HGNC	ENSG00000146477				47	0	0	40	11	21.5686
PDE10A	0	genome.wustl.edu	37	6	165956946	165956946	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	6	165956946	165956946	T	C	SNP	PDE10A	ENST00000539869	human	ensembl	74_37	-1	known	missense	c.178	p.K60E	1.000	NULL	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE10A	HGNC	ENSG00000112541				70	0	0	52	45	46.3918
RPS6KA2	0	genome.wustl.edu	37	6	166836802	166836802	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	6	166836802	166836802	C	T	SNP	RPS6KA2	ENST00000510118	human	ensembl	74_37	-1	known	missense	c.1760	p.R587H	0.971	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase_II,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	RPS6KA2	HGNC	ENSG00000071242				59	0	0	40	25	38.4615
SLC17A4	0	genome.wustl.edu	37	6	25762200	25762200	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	6	25762200	25762200	G	A	SNP	SLC17A4	ENST00000377905	human	ensembl	74_37	+1	known	missense	c.10	p.G4R	0.000	superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC17A4	HGNC	ENSG00000146039				38	0	0	57	16	21.9178
SLC17A2	0	genome.wustl.edu	37	6	25913642	25913642	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	6	25913642	25913642	G	C	SNP	SLC17A2	ENST00000377850	human	ensembl	74_37	-1	known	missense	c.1340	p.S447C	0.944	superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC17A2	HGNC	ENSG00000112337				42	0	0	28	18	39.1304
BTN1A1	0	genome.wustl.edu	37	6	26508302	26508302	+	Silent	SNP	T	T	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	6	26508302	26508302	T	A	SNP	BTN1A1	ENST00000244513	human	ensembl	74_37	+1	known	silent	c.894	p.A298	0.008	superfamily_ConA-like_lec_gl_sf,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Ig_V-set,pfam_CD80_C2-set,superfamily_ConA-like_lec_gl_sf,smart_Ig_sub,smart_Ig_V-set_subgr,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Ig-like_dom,prints_Butyrophylin	-	no_errors	BTN1A1	HGNC	ENSG00000124557				85	0	0	82	24	22.6415
ZNRD1	0	genome.wustl.edu	37	6	30029766	30029766	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	6	30029766	30029766	A	C	SNP	ZNRD1	ENST00000332435	human	ensembl	74_37	+1	known	missense	c.218	p.E73A	0.945	NULL	pfam_Znf_TFIIS,smart_Znf_TFIIS,pfscan_Znf_TFIIS	-	no_errors	ZNRD1	HGNC	ENSG00000066379				121	0	0	99	27	21.4286
SKIV2L	0	genome.wustl.edu	37	6	31935513	31935513	+	Silent	SNP	A	A	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	6	31935513	31935513	A	C	SNP	SKIV2L	ENST00000375394	human	ensembl	74_37	+1	known	silent	c.2605	p.R869	0.997	pirsf_RNA_helicase_ATP-dep_SK12/DOB1	pfam_DSH_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pirsf_RNA_helicase_ATP-dep_SK12/DOB1,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SKIV2L	HGNC	ENSG00000204351				134	0	0	121	32	20.915
CYP21A2	0	genome.wustl.edu	37	6	32006979	32006979	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	6	32006979	32006979	A	T	SNP	CYP21A2	ENST00000418967	human	ensembl	74_37	+1	known	missense	c.401	p.D134V	0.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP21A2	HGNC	ENSG00000231852				10	0	0	10	3	23.0769
TNXB	0	genome.wustl.edu	37	6	32017337	32017337	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	6	32017337	32017337	G	T	SNP	TNXB	ENST00000375247	human	ensembl	74_37	-1	known	missense	c.9461	p.P3154H	0.756	NULL	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNXB	HGNC	ENSG00000168477				38	0	0	29	12	29.2683
GPSM3	0	genome.wustl.edu	37	6	32159994	32159994	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	6	32159994	32159994	G	A	SNP	GPSM3	ENST00000375040	human	ensembl	74_37	-1	known	missense	c.76	p.P26S	0.686	NULL	pfam_GoLoco_motif,smart_GoLoco_motif,pfscan_GoLoco_motif	-	no_errors	GPSM3	HGNC	ENSG00000213654				69	0	0	48	15	23.8095
BRD2	0	genome.wustl.edu	37	6	32942489	32942489	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	6	32942489	32942489	C	T	SNP	BRD2	ENST00000395289	human	ensembl	74_37	+1	known	nonsense	c.280	p.Q94*	1.000	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRD2	HGNC	ENSG00000204256				59	0	0	50	13	20.6349
PTK7	0	genome.wustl.edu	37	6	43098135	43098135	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	6	43098135	43098135	A	G	SNP	PTK7	ENST00000230419	human	ensembl	74_37	+1	known	missense	c.638	p.Q213R	1.000	smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Immunoglobulin,pfam_Prot_kinase_dom,pfam_Ig_V-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PTK7	HGNC	ENSG00000112655				66	0	0	43	16	27.1186
LY86	0	genome.wustl.edu	37	6	6626652	6626652	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	6	6626652	6626652	G	A	SNP	LY86	ENST00000230568	human	ensembl	74_37	+1	known	missense	c.350	p.G117E	1.000	pfam_ML_dom,superfamily_Ig_E-set,smart_ML_dom	pfam_ML_dom,superfamily_Ig_E-set,smart_ML_dom	-	no_errors	LY86	HGNC	ENSG00000112799				55	0	0	46	28	37.8378
COL9A1	0	genome.wustl.edu	37	6	70935702	70935702	+	Silent	SNP	T	T	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	6	70935702	70935702	T	A	SNP	COL9A1	ENST00000357250	human	ensembl	74_37	-1	known	silent	c.2514	p.G838	0.983	pfam_Collagen	pfam_Collagen,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	-	no_errors	COL9A1	HGNC	ENSG00000112280				66	0	0	64	20	23.8095
HTR1E	0	genome.wustl.edu	37	6	87725329	87725329	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	6	87725329	87725329	T	C	SNP	HTR1E	ENST00000305344	human	ensembl	74_37	+1	known	missense	c.277	p.F93L	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_5HT_rcpt	-	no_errors	HTR1E	HGNC	ENSG00000168830				141	0	0	77	59	43.3824
MDN1	0	genome.wustl.edu	37	6	90418231	90418231	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	6	90418231	90418231	C	A	SNP	MDN1	ENST00000369393	human	ensembl	74_37	-1	known	nonsense	c.7882	p.E2628*	1.000	pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159				119	1	0.833333	131	43	24.7126
UFL1	0	genome.wustl.edu	37	6	96997371	96997371	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	6	96997371	96997371	G	A	SNP	UFL1	ENST00000369278	human	ensembl	74_37	+1	known	missense	c.1604	p.R535H	1.000	NULL	pfam_E3_UFM1_ligase_1	-	no_errors	UFL1	HGNC	ENSG00000014123				60	0	0	40	37	48.0519
MUC17	0	genome.wustl.edu	37	7	100685361	100685361	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	7	100685361	100685361	G	A	SNP	MUC17	ENST00000306151	human	ensembl	74_37	+1	known	missense	c.10664	p.S3555N	0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_EG-like_dom,pfscan_SEA_dom	-	no_errors	MUC17	HGNC	ENSG00000169876				343	0	0	319	98	23.5012
SLC26A4	0	genome.wustl.edu	37	7	107330610	107330610	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	7	107330610	107330610	C	G	SNP	SLC26A4	ENST00000265715	human	ensembl	74_37	+1	known	missense	c.1191	p.F397L	1.000	pfam_Sulph_transpt,tigrfam_SulP_transpt	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	-	no_errors	SLC26A4	HGNC	ENSG00000091137				152	0	0	108	93	46.2687
SCIN	0	genome.wustl.edu	37	7	12683929	12683929	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	7	12683929	12683929	G	C	SNP	SCIN	ENST00000297029	human	ensembl	74_37	+1	known	missense	c.1748	p.G583A	0.999	pfam_Gelsolin_dom,smart_Villin/Gelsolin,prints_Villin/Gelsolin	pfam_Gelsolin_dom,smart_Villin/Gelsolin,prints_Villin/Gelsolin	-	no_errors	SCIN	HGNC	ENSG00000006747				9	0	0	7	3	30
CCDC136	0	genome.wustl.edu	37	7	128454794	128454794	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	7	128454794	128454794	C	G	SNP	CCDC136	ENST00000297788	human	ensembl	74_37	+1	known	missense	c.2866	p.Q956E	0.998	NULL	NULL	-	no_errors	CCDC136	HGNC	ENSG00000128596				18	0	0	16	5	23.8095
PLXNA4	0	genome.wustl.edu	37	7	131825391	131825391	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	7	131825391	131825391	T	G	SNP	PLXNA4	ENST00000321063	human	ensembl	74_37	-1	known	missense	c.5405	p.K1802T	1.000	pfam_Plexin_cytoplasmic_RasGAP_dom,superfamily_Rho_GTPase_activation_prot	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA4	HGNC	ENSG00000221866				95	0	0	54	19	26.0274
TRPV5	0	genome.wustl.edu	37	7	142609646	142609646	+	Splice_Site	SNP	A	A	G			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	7	142609646	142609646	A	G	SNP	TRPV5	ENST00000265310	human	ensembl	74_37	-1	known	splice_site	c.1788+2	e13+2	1.000	-	-	-	no_errors	TRPV5	HGNC	ENSG00000127412				78	0	0	42	21	33.3333
ABCB5	0	genome.wustl.edu	37	7	20682932	20682932	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	7	20682932	20682932	T	G	SNP	ABCB5	ENST00000404938	human	ensembl	74_37	+1	putative	missense	c.440	p.V147G	0.515	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,pfam_ABC_ATPase_put,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCB5	HGNC	ENSG00000004846				48	0	0	42	6	12.5
PCLO	0	genome.wustl.edu	37	7	82451955	82451955	+	Nonsense_Mutation	SNP	T	T	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	7	82451955	82451955	T	A	SNP	PCLO	ENST00000333891	human	ensembl	74_37	-1	known	nonsense	c.14647	p.K4883*	1.000	NULL	pfam_Znf_piccolo,pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472				257	0	0	260	83	24.1983
PCLO	0	genome.wustl.edu	37	7	82544574	82544574	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	7	82544574	82544574	A	C	SNP	PCLO	ENST00000333891	human	ensembl	74_37	-1	known	missense	c.12728	p.F4243C	1.000	NULL	pfam_Znf_piccolo,pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472				38	0	0	18	17	48.5714
PCLO	0	genome.wustl.edu	37	7	82545563	82545563	+	Silent	SNP	A	A	G			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	7	82545563	82545563	A	G	SNP	PCLO	ENST00000333891	human	ensembl	74_37	-1	known	silent	c.11739	p.T3913	0.989	NULL	pfam_Znf_piccolo,pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472				401	0	0	322	117	26.6515
SEMA3D	0	genome.wustl.edu	37	7	84666269	84666269	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	7	84666269	84666269	T	C	SNP	SEMA3D	ENST00000284136	human	ensembl	74_37	-1	known	missense	c.1127	p.K376R	1.000	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Semap_dom,pfam_Ig_V-set,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_Ig_sub,pfscan_Semap_dom,pfscan_Ig-like_dom	-	no_errors	SEMA3D	HGNC	ENSG00000153993				113	0	0	110	40	26.6667
SEMA3D	0	genome.wustl.edu	37	7	84751064	84751064	+	Silent	SNP	G	G	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	7	84751064	84751064	G	T	SNP	SEMA3D	ENST00000284136	human	ensembl	74_37	-1	known	silent	c.144	p.T48	0.989	superfamily_Semap_dom,pfscan_Semap_dom	pfam_Semap_dom,pfam_Ig_V-set,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_Ig_sub,pfscan_Semap_dom,pfscan_Ig-like_dom	-	no_errors	SEMA3D	HGNC	ENSG00000153993				29	0	0	29	7	19.4444
RUNDC3B	0	genome.wustl.edu	37	7	87280192	87280192	+	Silent	SNP	T	T	G			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	7	87280192	87280192	T	G	SNP	RUNDC3B	ENST00000338056	human	ensembl	74_37	+1	known	silent	c.177	p.S59	0.965	pfscan_Run	pfam_Run,smart_Run,pfscan_Run	-	no_errors	RUNDC3B	HGNC	ENSG00000105784				48	0	0	33	27	45
DPY19L2P4	0	genome.wustl.edu	37	7	89749029	89749029	+	RNA	SNP	G	G	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	7	89749029	89749029	G	A	SNP	DPY19L2P4	ENST00000497063	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	DPY19L2P4	HGNC	ENSG00000235436				20	0	0	14	4	22.2222
KRIT1	0	genome.wustl.edu	37	7	91863882	91863882	+	Silent	SNP	A	A	G			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	7	91863882	91863882	A	G	SNP	KRIT1	ENST00000340022	human	ensembl	74_37	-1	known	silent	c.870	p.F290	1.000	smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_FERM_central,superfamily_Ankyrin_rpt-contain_dom,superfamily_FERM_central,smart_Ankyrin_rpt,smart_Band_41_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_FERM_domain	-	no_errors	KRIT1	HGNC	ENSG00000001631				61	0	0	73	16	17.9775
COL1A2	0	genome.wustl.edu	37	7	94054940	94054940	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	7	94054940	94054940	G	A	SNP	COL1A2	ENST00000297268	human	ensembl	74_37	+1	known	missense	c.2800	p.G934S	1.000	NULL	pfam_Collagen,pfam_Fib_collagen_C,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fib_collagen_C	-	no_errors	COL1A2	HGNC	ENSG00000164692				92	0	0	78	14	15.2174
LMTK2	0	genome.wustl.edu	37	7	97821315	97821315	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	7	97821315	97821315	C	T	SNP	LMTK2	ENST00000297293	human	ensembl	74_37	+1	known	missense	c.1538	p.S513L	0.708	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	LMTK2	HGNC	ENSG00000164715				72	0	0	73	12	14.1176
TRRAP	0	genome.wustl.edu	37	7	98567766	98567766	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	7	98567766	98567766	C	G	SNP	TRRAP	ENST00000359863	human	ensembl	74_37	+1	known	missense	c.7523	p.P2508R	0.992	superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	TRRAP	HGNC	ENSG00000196367				128	0	0	95	18	15.9292
ANGPT1	0	genome.wustl.edu	37	8	108334272	108334272	+	Silent	SNP	T	T	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	8	108334272	108334272	T	C	SNP	ANGPT1	ENST00000517746	human	ensembl	74_37	-1	known	silent	c.660	p.Q220	0.971	NULL	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	-	no_errors	ANGPT1	HGNC	ENSG00000154188				45	0	0	63	12	16
PKHD1L1	0	genome.wustl.edu	37	8	110417313	110417313	+	Silent	SNP	A	A	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	8	110417313	110417313	A	C	SNP	PKHD1L1	ENST00000378402	human	ensembl	74_37	+1	known	silent	c.1623	p.S541	0.566	NULL	pfam_IPT,pfam_G8_domain,pfam_PA14,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,superfamily_Cupredoxin,smart_IPT,smart_PA14,smart_PbH1	-	no_errors	PKHD1L1	HGNC	ENSG00000205038				8	0	0	4	3	42.8571
MTMR9	0	genome.wustl.edu	37	8	11142565	11142565	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	8	11142565	11142565	C	G	SNP	MTMR9	ENST00000221086	human	ensembl	74_37	+1	known	missense	c.168	p.D56E	1.000	NULL	pfam_Myotubularin-like_Pase_dom	-	no_errors	MTMR9	HGNC	ENSG00000104643				23	0	0	24	3	11.1111
SNTB1	0	genome.wustl.edu	37	8	121551190	121551190	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	8	121551190	121551190	C	A	SNP	SNTB1	ENST00000395601	human	ensembl	74_37	-1	known	missense	c.1544	p.C515F	1.000	NULL	pfam_PDZ,pfam_Pleckstrin_homology,superfamily_PDZ,smart_Pleckstrin_homology,smart_PDZ,pfscan_PDZ,pfscan_Pleckstrin_homology	-	no_errors	SNTB1	HGNC	ENSG00000172164				35	0	0	35	12	25.5319
KCNQ3	0	genome.wustl.edu	37	8	133142094	133142094	+	Silent	SNP	G	G	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	8	133142094	133142094	G	A	SNP	KCNQ3	ENST00000388996	human	ensembl	74_37	-1	known	silent	c.2034	p.S678	0.054	NULL	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ankyrin-G_BS,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl_volt-dep_KCNQ3,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ3	HGNC	ENSG00000184156				146	0	0	128	22	14.6667
KCNQ3	0	genome.wustl.edu	37	8	133492407	133492407	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	8	133492407	133492407	A	T	SNP	KCNQ3	ENST00000388996	human	ensembl	74_37	-1	known	missense	c.373	p.Y125N	1.000	NULL	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ankyrin-G_BS,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl_volt-dep_KCNQ3,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ3	HGNC	ENSG00000184156				31	0	0	20	16	44.4444
TG	0	genome.wustl.edu	37	8	133895189	133895189	+	Silent	SNP	C	C	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	8	133895189	133895189	C	T	SNP	TG	ENST00000220616	human	ensembl	74_37	+1	known	silent	c.1020	p.D340	0.000	pfam_Thyroglobulin_1,superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,pirsf_Thyroglobulin,pfscan_Thyroglobulin_1	pfam_Thyroglobulin_1,pfam_CarbesteraseB,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,pirsf_Thyroglobulin,pfscan_Thyroglobulin_1	-	no_errors	TG	HGNC	ENSG00000042832				30	0	0	18	18	50
FAM135B	0	genome.wustl.edu	37	8	139189620	139189620	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	8	139189620	139189620	T	G	SNP	FAM135B	ENST00000395297	human	ensembl	74_37	-1	known	missense	c.1073	p.K358T	0.984	pfam_DUF3657	pfam_DUF676_lipase-like,pfam_DUF3657,pfam_PGAP1-like	-	no_errors	FAM135B	HGNC	ENSG00000147724				35	0	0	48	10	17.2414
PTK2	0	genome.wustl.edu	37	8	141771262	141771262	+	Splice_Site	SNP	A	A	G			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	8	141771262	141771262	A	G	SNP	PTK2	ENST00000395218	human	ensembl	74_37	-1	known	splice_site	c.1332+2	e14+2	1.000	-	-	-	no_errors	PTK2	HGNC	ENSG00000169398				65	0	0	61	22	26.506
MSR1	0	genome.wustl.edu	37	8	16026026	16026026	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	8	16026026	16026026	G	A	SNP	MSR1	ENST00000262101	human	ensembl	74_37	-1	known	nonsense	c.571	p.Q191*	0.273	superfamily_STAT_TF_coiled-coil	pfam_SRCR,pfam_Macro_scav_rcpt,pfam_Collagen,superfamily_Srcr_rcpt-rel,superfamily_STAT_TF_coiled-coil,smart_Srcr_rcpt-rel,prints_Macro_scav_rcpt,prints_SRCR,pfscan_SRCR	-	no_errors	MSR1	HGNC	ENSG00000038945				56	0	0	54	16	22.8571
MSR1	0	genome.wustl.edu	37	8	16026126	16026126	+	Silent	SNP	C	C	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	8	16026126	16026126	C	A	SNP	MSR1	ENST00000262101	human	ensembl	74_37	-1	known	silent	c.471	p.L157	0.926	pfam_Macro_scav_rcpt,prints_Macro_scav_rcpt	pfam_SRCR,pfam_Macro_scav_rcpt,pfam_Collagen,superfamily_Srcr_rcpt-rel,superfamily_STAT_TF_coiled-coil,smart_Srcr_rcpt-rel,prints_Macro_scav_rcpt,prints_SRCR,pfscan_SRCR	-	no_errors	MSR1	HGNC	ENSG00000038945				96	0	0	101	33	24.6269
NRG1	0	genome.wustl.edu	37	8	32453467	32453467	+	Silent	SNP	G	G	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	8	32453467	32453467	G	A	SNP	NRG1	ENST00000338921	human	ensembl	74_37	+1	known	silent	c.222	p.G74	0.996	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Neuregulin_1_C,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Ig-like_dom,prints_Neuregulin	-	no_errors	NRG1	HGNC	ENSG00000157168				106	0	0	66	52	44.0678
UNC5D	0	genome.wustl.edu	37	8	35584038	35584038	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	8	35584038	35584038	C	G	SNP	UNC5D	ENST00000404895	human	ensembl	74_37	+1	known	missense	c.1672	p.P558A	1.000	pfam_ZU5,smart_ZU5,pfscan_ZU5	pfam_ZU5,pfam_Ig_I-set,pfam_Thrombospondin_1_rpt,pfam_Death_domain,pfam_Immunoglobulin,superfamily_DEATH-like_dom,superfamily_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,smart_Thrombospondin_1_rpt,smart_ZU5,smart_Death_domain,pfscan_Thrombospondin_1_rpt,pfscan_ZU5,pfscan_Ig-like_dom	-	no_errors	UNC5D	HGNC	ENSG00000156687				186	0	0	105	110	51.1628
VCPIP1	0	genome.wustl.edu	37	8	67577683	67577683	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	8	67577683	67577683	G	A	SNP	VCPIP1	ENST00000310421	human	ensembl	74_37	-1	known	missense	c.1511	p.T504I	1.000	NULL	pfam_OTU,pfscan_OTU	-	no_errors	VCPIP1	HGNC	ENSG00000175073				184	0	0	162	55	25.3456
PREX2	0	genome.wustl.edu	37	8	68981299	68981299	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	8	68981299	68981299	G	T	SNP	PREX2	ENST00000288368	human	ensembl	74_37	+1	known	missense	c.1371	p.Q457H	1.000	pfam_DEP_dom,smart_DEP_dom,pfscan_DEP_dom	pfam_DH-domain,pfam_DEP_dom,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX2	HGNC	ENSG00000046889				43	0	0	32	21	39.6226
NCOA2	0	genome.wustl.edu	37	8	71068598	71068598	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	8	71068598	71068598	A	T	SNP	NCOA2	ENST00000452400	human	ensembl	74_37	-1	known	missense	c.2002	p.S668T	1.000	pfam_SRC-1,pirsf_Nuclear_rcpt_coactivator	pfam_DUF1518,pfam_SRC-1,pfam_Nuc_rcpt_coact_Ncoa-typ,pfam_PAS_fold,superfamily_PAS,superfamily_Nuc_rcpt_coact,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,pirsf_Nuclear_rcpt_coactivator,pfscan_PAS,pfscan_bHLH_dom	-	no_errors	NCOA2	HGNC	ENSG00000140396				150	0	0	86	72	45.5696
ZFHX4	0	genome.wustl.edu	37	8	77616667	77616667	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	8	77616667	77616667	A	G	SNP	ZFHX4	ENST00000521891	human	ensembl	74_37	+1	known	missense	c.344	p.E115G	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656				140	0	0	120	41	25.4658
COL15A1	0	genome.wustl.edu	37	9	101784383	101784383	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	9	101784383	101784383	G	C	SNP	COL15A1	ENST00000375001	human	ensembl	74_37	+1	known	missense	c.1712	p.G571A	0.036	NULL	pfam_Collagenase_NC10/endostatin,pfam_Collagen,superfamily_C-type_lectin_fold,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	-	no_errors	COL15A1	HGNC	ENSG00000204291				164	0	0	165	34	17.0854
GRIN3A	0	genome.wustl.edu	37	9	104432369	104432369	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	9	104432369	104432369	T	G	SNP	GRIN3A	ENST00000361820	human	ensembl	74_37	-1	known	missense	c.2325	p.E775D	1.000	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,superfamily_Peripla_BP_I,smart_Glu_rcpt_Glu/Gly-bd,smart_Iontro_glu_rcpt,prints_NMDA_rcpt	-	no_errors	GRIN3A	HGNC	ENSG00000198785				80	0	0	66	58	46.7742
OR13C4	0	genome.wustl.edu	37	9	107289434	107289434	+	Silent	SNP	A	A	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	9	107289434	107289434	A	C	SNP	OR13C4	ENST00000277216	human	ensembl	74_37	-1	known	silent	c.57	p.G19	0.123	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR13C4	HGNC	ENSG00000148136				87	0	0	59	43	42.1569
SVEP1	0	genome.wustl.edu	37	9	113212395	113212395	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	9	113212395	113212395	A	C	SNP	SVEP1	ENST00000401783	human	ensembl	74_37	-1	known	missense	c.4047	p.C1349W	1.000	pfam_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_Sushi_SCR_CCP,pfam_EG-like_dom,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_Hyalin,pfam_VWF_A,pfam_Pentaxin,pfam_EGF_extracell,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Sushi_SCR_CCP,superfamily_Growth_fac_rcpt_N_dom,smart_VWF_A,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Pentaxin,pfscan_EG-like_dom,pfscan_Hyalin,pfscan_Sushi_SCR_CCP,pfscan_VWF_A,prints_Pentaxin	-	no_errors	SVEP1	HGNC	ENSG00000165124				298	0	0	279	86	23.5616
MAPKAP1	0	genome.wustl.edu	37	9	128268643	128268643	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	9	128268643	128268643	C	A	SNP	MAPKAP1	ENST00000265960	human	ensembl	74_37	-1	known	missense	c.1012	p.D338Y	1.000	pfam_SIN1	pfam_SIN1	-	no_errors	MAPKAP1	HGNC	ENSG00000119487				115	0	0	82	35	29.9145
RAPGEF1	0	genome.wustl.edu	37	9	134501456	134501456	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	9	134501456	134501456	C	T	SNP	RAPGEF1	ENST00000372190	human	ensembl	74_37	-1	known	missense	c.1558	p.V520I	0.000	NULL	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RAPGEF1	HGNC	ENSG00000107263				32	0	0	30	16	34.7826
ADAMTS13	0	genome.wustl.edu	37	9	136310934	136310934	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	9	136310934	136310934	G	A	SNP	ADAMTS13	ENST00000371929	human	ensembl	74_37	+1	known	missense	c.2725	p.G909R	0.998	superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,superfamily_CUB_dom,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS13	HGNC	ENSG00000160323				61	0	0	35	40	53.3333
TRPM3	0	genome.wustl.edu	37	9	73457939	73457939	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	9	73457939	73457939	C	G	SNP	TRPM3	ENST00000423814	human	ensembl	74_37	-1	known	missense	c.787	p.E263Q	1.000	NULL	pfam_Ion_trans_dom	-	no_errors	TRPM3	HGNC	ENSG00000083067				39	0	0	55	12	17.9104
VPS13A	0	genome.wustl.edu	37	9	79985399	79985399	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	9	79985399	79985399	G	C	SNP	VPS13A	ENST00000360280	human	ensembl	74_37	+1	known	missense	c.8812	p.D2938H	1.000	NULL	pfam_VPSAP_dom,pfam_Autophagy-rel_C	-	no_errors	VPS13A	HGNC	ENSG00000197969				65	0	0	46	47	50.5376
VPS13A	0	genome.wustl.edu	37	9	79985400	79985400	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	9	79985400	79985400	A	T	SNP	VPS13A	ENST00000360280	human	ensembl	74_37	+1	known	missense	c.8813	p.D2938V	1.000	NULL	pfam_VPSAP_dom,pfam_Autophagy-rel_C	-	no_errors	VPS13A	HGNC	ENSG00000197969				65	0	0	46	47	50.5376
KIF27	0	genome.wustl.edu	37	9	86506355	86506355	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	9	86506355	86506355	A	C	SNP	KIF27	ENST00000297814	human	ensembl	74_37	-1	known	missense	c.1664	p.L555R	1.000	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF27	HGNC	ENSG00000165115				31	0	0	27	24	47.0588
GLA	0	genome.wustl.edu	37	X	100656666	100656666	+	Silent	SNP	T	T	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	X	100656666	100656666	T	C	SNP	GLA	ENST00000218516	human	ensembl	74_37	-1	known	silent	c.501	p.L167	0.819	superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_27	pfam_Glyco_hydro_GHD,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_27	-	no_errors	GLA	HGNC	ENSG00000102393				157	0	0	203	17	7.72727
TCEAL6	0	genome.wustl.edu	37	X	101396123	101396123	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	X	101396123	101396123	C	T	SNP	TCEAL6	ENST00000372773	human	ensembl	74_37	-1	known	missense	c.181	p.E61K	0.000	pfam_TF_A-like/BEX-like	pfam_TF_A-like/BEX-like	-	no_errors	TCEAL6	HGNC	ENSG00000204071				144	0	0	164	12	6.81818
WDR44	0	genome.wustl.edu	37	X	117526603	117526603	+	Silent	SNP	A	A	G			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	X	117526603	117526603	A	G	SNP	WDR44	ENST00000254029	human	ensembl	74_37	+1	known	silent	c.195	p.E65	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR44	HGNC	ENSG00000131725				54	0	0	65	45	40.9091
RBMX2	0	genome.wustl.edu	37	X	129545434	129545434	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	X	129545434	129545434	G	A	SNP	RBMX2	ENST00000305536	human	ensembl	74_37	+1	known	missense	c.416	p.R139H	0.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBMX2	HGNC	ENSG00000134597				43	0	0	49	28	36.3636
IGSF1	0	genome.wustl.edu	37	X	130408803	130408803	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	X	130408803	130408803	T	A	SNP	IGSF1	ENST00000370903	human	ensembl	74_37	-1	known	missense	c.3536	p.K1179M	0.994	smart_Ig_sub,smart_Ig_sub2	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	IGSF1	HGNC	ENSG00000147255				188	0	0	165	91	35.5469
IGSF1	0	genome.wustl.edu	37	X	130416654	130416654	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	X	130416654	130416654	T	G	SNP	IGSF1	ENST00000370903	human	ensembl	74_37	-1	known	missense	c.1010	p.Q337P	0.445	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	IGSF1	HGNC	ENSG00000147255				116	0	0	119	51	30
ZNF75D	0	genome.wustl.edu	37	X	134426356	134426356	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	X	134426356	134426356	C	T	SNP	ZNF75D	ENST00000370766	human	ensembl	74_37	-1	known	missense	c.455	p.G152E	0.357	smart_Tscrpt_reg_SCAN	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF75D	HGNC	ENSG00000186376				144	0	0	143	39	21.4286
SAGE1	0	genome.wustl.edu	37	X	134993908	134993908	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	X	134993908	134993908	G	C	SNP	SAGE1	ENST00000324447	human	ensembl	74_37	+1	known	missense	c.2317	p.D773H	0.972	NULL	NULL	-	no_errors	SAGE1	HGNC	ENSG00000181433				199	0	0	183	111	37.7551
F9	0	genome.wustl.edu	37	X	138633258	138633258	+	Silent	SNP	T	T	G			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	X	138633258	138633258	T	G	SNP	F9	ENST00000218099	human	ensembl	74_37	+1	known	silent	c.558	p.T186	0.000	pirsf_Pept_S1A_FX	pfam_Peptidase_S1,pfam_GLA_domain,pfam_EG-like_dom,superfamily_Trypsin-like_Pept_dom,superfamily_GLA_domain,smart_GLA_domain,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Peptidase_S1,pirsf_Pept_S1A_FX,pfscan_EG-like_dom,pfscan_GLA_domain,pfscan_Peptidase_S1,prints_Peptidase_S1A,prints_GLA_domain	-	no_errors	F9	HGNC	ENSG00000101981				69	0	0	57	34	37.3626
CXorf66	0	genome.wustl.edu	37	X	139038893	139038893	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	X	139038893	139038893	T	G	SNP	CXorf66	ENST00000370540	human	ensembl	74_37	-1	known	missense	c.248	p.K83T	0.006	NULL	NULL	-	no_errors	CXorf66	HGNC	ENSG00000203933				98	0	0	116	34	22.6667
SOX3	0	genome.wustl.edu	37	X	139586756	139586756	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	X	139586756	139586756	A	G	SNP	SOX3	ENST00000370536	human	ensembl	74_37	-1	known	missense	c.470	p.M157T	1.000	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	pfam_HMG_box_dom,pfam_TF_SOX,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	SOX3	HGNC	ENSG00000134595				69	0	0	83	42	33.6
MAGEC1	0	genome.wustl.edu	37	X	140996141	140996141	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	X	140996141	140996141	C	A	SNP	MAGEC1	ENST00000285879	human	ensembl	74_37	+1	known	missense	c.2951	p.S984Y	0.013	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEC1	HGNC	ENSG00000155495				158	0	0	192	41	17.5966
MAGEA8	0	genome.wustl.edu	37	X	149013559	149013559	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	X	149013559	149013559	A	C	SNP	MAGEA8	ENST00000286482	human	ensembl	74_37	+1	known	missense	c.513	p.E171D	0.027	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEA8	HGNC	ENSG00000156009				95	0	0	95	41	30.1471
MAGEA3	0	genome.wustl.edu	37	X	151935504	151935504	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	X	151935504	151935504	G	C	SNP	MAGEA3	ENST00000370278	human	ensembl	74_37	-1	known	missense	c.663	p.I221M	0.007	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEA3	HGNC	ENSG00000221867				260	0	0	246	161	39.5577
GDI1	0	genome.wustl.edu	37	X	153670030	153670030	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	X	153670030	153670030	G	C	SNP	GDI1	ENST00000447750	human	ensembl	74_37	+1	known	missense	c.880	p.A294P	1.000	pfam_GDP_dissociation_inhibitor	pfam_GDP_dissociation_inhibitor,prints_RabGDI,prints_GDP_dissociation_inhibitor	-	no_errors	GDI1	HGNC	ENSG00000203879				132	0	0	143	32	18.2857
PLXNA3	0	genome.wustl.edu	37	X	153699945	153699945	+	Silent	SNP	C	C	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	X	153699945	153699945	C	T	SNP	PLXNA3	ENST00000369682	human	ensembl	74_37	+1	known	silent	c.5484	p.N1828	0.524	pfam_Plexin_cytoplasmic_RasGAP_dom,superfamily_Rho_GTPase_activation_prot	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA3	HGNC	ENSG00000130827				78	0	0	76	35	31.5315
DKC1	0	genome.wustl.edu	37	X	154002965	154002965	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	X	154002965	154002965	A	G	SNP	DKC1	ENST00000369550	human	ensembl	74_37	+1	known	missense	c.1244	p.E415G	0.299	NULL	pfam_Dyskerin-like,pfam_PsdUridine_synth,pfam_PUA,superfamily_PsdUridine_synth_cat_dom,superfamily_PUA-like_domain,smart_PUA,pfscan_PUA,tigrfam_tRNA_PsdUridine_synth_B_fam,tigrfam_Uncharacterised_CHP00451	-	no_errors	DKC1	HGNC	ENSG00000130826				54	0	0	35	14	28.5714
REPS2	0	genome.wustl.edu	37	X	17024429	17024429	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	X	17024429	17024429	A	T	SNP	REPS2	ENST00000357277	human	ensembl	74_37	+1	known	missense	c.359	p.Q120L	1.000	pfscan_EPS15_homology	smart_EPS15_homology,pfscan_EF_hand_dom,pfscan_EPS15_homology	-	no_errors	REPS2	HGNC	ENSG00000169891				169	0	0	238	46	16.1972
RAI2	0	genome.wustl.edu	37	X	17818669	17818669	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	X	17818669	17818669	T	A	SNP	RAI2	ENST00000331511	human	ensembl	74_37	-1	known	missense	c.1462	p.M488L	0.974	NULL	NULL	-	no_errors	RAI2	HGNC	ENSG00000131831				300	0	0	515	34	6.19308
RAI2	0	genome.wustl.edu	37	X	17818670	17818670	+	Silent	SNP	G	G	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	X	17818670	17818670	G	T	SNP	RAI2	ENST00000331511	human	ensembl	74_37	-1	known	silent	c.1461	p.S487	1.000	NULL	NULL	-	no_errors	RAI2	HGNC	ENSG00000131831				302	0	0	513	34	6.21572
SH3KBP1	0	genome.wustl.edu	37	X	19587262	19587262	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	X	19587262	19587262	C	G	SNP	SH3KBP1	ENST00000397821	human	ensembl	74_37	-1	known	missense	c.1343	p.G448A	0.981	NULL	pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_p67phox,prints_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SH3KBP1	HGNC	ENSG00000147010				220	0	0	224	107	32.3263
DMD	0	genome.wustl.edu	37	X	32381009	32381009	+	Silent	SNP	A	A	G			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	X	32381009	32381009	A	G	SNP	DMD	ENST00000357033	human	ensembl	74_37	-1	known	silent	c.5221	p.L1741	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_dom,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_dom,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947				74	0	0	62	44	41.5094
FAM47A	0	genome.wustl.edu	37	X	34148104	34148104	+	Silent	SNP	A	A	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	X	34148104	34148104	A	C	SNP	FAM47A	ENST00000346193	human	ensembl	74_37	-1	known	silent	c.2292	p.T764	0.020	NULL	NULL	-	no_errors	FAM47A	HGNC	ENSG00000185448				143	0	0	137	80	36.8664
CXorf67	0	genome.wustl.edu	37	X	51150232	51150232	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	X	51150232	51150232	G	A	SNP	CXorf67	ENST00000342995	human	ensembl	74_37	+1	known	missense	c.364	p.A122T	0.000	NULL	NULL	-	no_errors	CXorf67	HGNC	ENSG00000187690				13	0	0	18	5	21.7391
CXorf67	0	genome.wustl.edu	37	X	51151081	51151081	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	X	51151081	51151081	C	T	SNP	CXorf67	ENST00000342995	human	ensembl	74_37	+1	known	missense	c.1213	p.R405C	0.001	NULL	NULL	-	no_errors	CXorf67	HGNC	ENSG00000187690				53	0	0	44	25	36.2319
AR	0	genome.wustl.edu	37	X	66941796	66941796	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	X	66941796	66941796	T	C	SNP	AR	ENST00000374690	human	ensembl	74_37	+1	known	missense	c.2440	p.F814L	1.000	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core	pfam_Andrgn_rcpt,pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Andrgn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	AR	HGNC	ENSG00000169083				58	0	0	60	19	24.0506
SLC7A3	0	genome.wustl.edu	37	X	70149577	70149577	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	X	70149577	70149577	C	G	SNP	SLC7A3	ENST00000298085	human	ensembl	74_37	-1	known	missense	c.271	p.V91L	0.989	pfam_AA-permease/SLC12A_dom,pirsf_AA/rel_permease1,tigrfam_Cat_AA_permease	pfam_AA-permease/SLC12A_dom,pirsf_AA/rel_permease1,tigrfam_Cat_AA_permease	-	no_errors	SLC7A3	HGNC	ENSG00000165349				36	0	0	36	20	35.7143
CXCR3	0	genome.wustl.edu	37	X	70836601	70836601	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	X	70836601	70836601	C	T	SNP	CXCR3	ENST00000373691	human	ensembl	74_37	-1	known	missense	c.862	p.V288M	0.188	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Chemokine_CXCR4	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Chemokine_CXCR3,prints_GPCR_Rhodpsn,prints_Chemokine_CXCR4,prints_Chemokine_rcpt,prints_ATII_rcpt	-	no_errors	CXCR3	HGNC	ENSG00000186810				12	0	0	13	4	23.5294
NAP1L2	0	genome.wustl.edu	37	X	72433470	72433470	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	X	72433470	72433470	G	C	SNP	NAP1L2	ENST00000373517	human	ensembl	74_37	-1	known	missense	c.859	p.L287V	0.992	pfam_NAP_family	pfam_NAP_family	-	no_errors	NAP1L2	HGNC	ENSG00000186462				49	0	0	55	28	33.7349
ATRX	0	genome.wustl.edu	37	X	76888866	76888866	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	X	76888866	76888866	C	T	SNP	ATRX	ENST00000373344	human	ensembl	74_37	-1	known	missense	c.4963	p.E1655K	1.000	pfam_SNF2_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_SNF2_N,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Znf_FYVE_PHD,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ATRX	HGNC	ENSG00000085224				181	0	0	182	112	38.0952
ATP7A	0	genome.wustl.edu	37	X	77284767	77284767	+	Silent	SNP	C	C	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	X	77284767	77284767	C	T	SNP	ATP7A	ENST00000341514	human	ensembl	74_37	+1	known	silent	c.2937	p.S979	0.740	pfam_ATPase_P-typ_transduc_dom_A,tigrfam_Cation_transp_P-typ_ATPase_IB	pfam_HeavyMe-assoc_HMA,pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_HeavyMe-assoc_HMA,pfscan_HeavyMe-assoc_HMA,prints_Cation_transp_P_typ_ATPase,prints_HG_scavenger,tigrfam_Cation_transp_P-typ_ATPase_IB,tigrfam_Cation_transp_P_typ_ATPase,tigrfam_HMA_Cu_ion-bd	-	no_errors	ATP7A	HGNC	ENSG00000165240				255	0	0	346	70	16.8269
LPAR4	0	genome.wustl.edu	37	X	78010580	78010580	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	X	78010580	78010580	A	C	SNP	LPAR4	ENST00000435339	human	ensembl	74_37	+1	known	missense	c.214	p.S72R	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	LPAR4	HGNC	ENSG00000147145				186	0	0	231	78	25.2427
TBX22	0	genome.wustl.edu	37	X	79282369	79282369	+	Splice_Site	SNP	T	T	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	X	79282369	79282369	T	A	SNP	TBX22	ENST00000373294	human	ensembl	74_37	+1	known	splice_site	c.798+2	e5+2	1.000	-	-	-	no_errors	TBX22	HGNC	ENSG00000122145				66	0	0	87	17	16.3462
RPS6KA6	0	genome.wustl.edu	37	X	83359576	83359576	+	Silent	SNP	G	G	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	X	83359576	83359576	G	A	SNP	RPS6KA6	ENST00000262752	human	ensembl	74_37	-1	known	silent	c.1545	p.F515	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_dom	-	no_errors	RPS6KA6	HGNC	ENSG00000072133				56	0	0	56	31	35.6322
PCDH11X	0	genome.wustl.edu	37	X	91137918	91137918	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	X	91137918	91137918	A	T	SNP	PCDH11X	ENST00000395337	human	ensembl	74_37	+1	known	missense	c.3046	p.T1016S	1.000	NULL	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDH11X	HGNC	ENSG00000102290				65	0	0	55	28	33.7349
KMT2A	0	genome.wustl.edu	37	11	118352441	118352441	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	11	118352441	118352441	A	-	DEL	KMT2A	ENST00000389506	human	ensembl	74_37	+1	known	frame_shift_del	c.3646	p.E1217fs	1.000	pirsf_MeTrfase_trithorax	pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_Bromodomain,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pirsf_MeTrfase_trithorax,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC,pfscan_Bromodomain	-	no_errors	KMT2A	HGNC	ENSG00000118058				106	0	0	102	18	15
ARCN1	0	genome.wustl.edu	37	11	118461214	118461215	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	11	118461214	118461215	-	G	INS	ARCN1	ENST00000264028	human	ensembl	74_37	+1	known	frame_shift_ins	c.977_978	p.L327fs	1.000:1.000	pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C,pfscan_Clathrin_mu_C	pfam_Clathrin_mu_C,pfam_AP_mu_sigma_su,superfamily_Clathrin_mu_C,superfamily_Longin-like_dom,pfscan_Clathrin_mu_C	-	no_errors	ARCN1	HGNC	ENSG00000095139				103	0	0	54	45	45.4545
KLHL28	0	genome.wustl.edu	37	14	45414614	45414615	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	14	45414614	45414615	-	C	INS	KLHL28	ENST00000396128	human	ensembl	74_37	-1	known	frame_shift_ins	c.518_517	p.F173fs	1.000:1.000	pfam_BACK,smart_BACK,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL28	HGNC	ENSG00000179454				101	0	0	112	31	21.6783
MT1L	0	genome.wustl.edu	37	16	56652646	56652647	+	RNA	INS	-	-	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	16	56652646	56652647	-	T	INS	MT1L	ENST00000565768	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.001	-	-	-	no_errors	MT1L	HGNC	ENSG00000260549				27	0	0	14	8	36.3636
MYO9B	0	genome.wustl.edu	37	19	17294679	17294680	+	Splice_Site	INS	-	-	A			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	19	17294679	17294680	-	A	INS	MYO9B	ENST00000594824	human	ensembl	74_37	+1	known	splice_site_ins	c.2373+2_2373+1	e15+2	1.000:1.000	-	-	-	no_errors	MYO9B	HGNC	ENSG00000099331				8	0	0	4	3	42.8571
ZNF283	0	genome.wustl.edu	37	19	44339705	44339712	+	Frame_Shift_Del	DEL	AGCATTAA	AGCATTAA	-			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	AGCATTAA	AGCATTAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	19	44339705	44339712	AGCATTAA	-	DEL	ZNF283	ENST00000324461	human	ensembl	74_37	+1	known	frame_shift_del	c.171_178	p.A58fs	0.390:0.080:0.041:0.040:0.038:0.046:0.035:0.023	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF283	HGNC	ENSG00000167637				30	0	0	11	4	26.6667
ICOS	0	genome.wustl.edu	37	2	204820653	204820654	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	2	204820653	204820654	-	T	INS	ICOS	ENST00000316386	human	ensembl	74_37	+1	known	frame_shift_ins	c.353_354	p.K120fs	1.000:0.990	NULL	NULL	-	no_errors	ICOS	HGNC	ENSG00000163600				56	0	0	67	22	24.7191
ECEL1	0	genome.wustl.edu	37	2	233345443	233345445	+	In_Frame_Del	DEL	GAA	GAA	-			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	GAA	GAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	2	233345443	233345445	GAA	-	DEL	ECEL1	ENST00000304546	human	ensembl	74_37	-1	known	in_frame_del	c.2136_2134	p.F712in_frame_del	1.000:1.000:1.000	pfam_Peptidase_M13_C	pfam_Peptidase_M13_N,pfam_Peptidase_M13_C,prints_Peptidase_M13_C	-	no_errors	ECEL1	HGNC	ENSG00000171551				73	0	0	79	6	7.05882
GZF1	0	genome.wustl.edu	37	20	23345921	23345923	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	GAG	GAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	20	23345921	23345923	GAG	-	DEL	GZF1	ENST00000338121	human	ensembl	74_37	+1	known	in_frame_del	c.901_903	p.E304in_frame_del	0.114:0.119:0.104	NULL	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	GZF1	HGNC	ENSG00000125812				60	0	0	76	6	7.31707
CST1	0	genome.wustl.edu	37	20	23729696	23729696	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	20	23729696	23729696	T	-	DEL	CST1	ENST00000304749	human	ensembl	74_37	-1	known	frame_shift_del	c.299	p.N100fs	0.419	pfam_Prot_inh_cystat,smart_Prot_inh_cystat	pfam_Prot_inh_cystat,smart_Prot_inh_cystat	-	no_errors	CST1	HGNC	ENSG00000170373				340	0	0	427	42	8.95522
APC	0	genome.wustl.edu	37	5	112174736	112174738	+	In_Frame_Del	DEL	GAA	GAA	-			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	GAA	GAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	5	112174736	112174738	GAA	-	DEL	APC	ENST00000257430	human	ensembl	74_37	+1	known	in_frame_del	c.3445_3447	p.E1151in_frame_del	1.000:1.000:1.000	pfam_APC_15aa_rpt	pfam_APC_basic_dom,pfam_EB1-bd,pfam_APC_Cys-rich_rpt,pfam_Armadillo,pfam_APC_dom,pfam_SAMP,pfam_APC_15aa_rpt,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	APC	HGNC	ENSG00000134982				57	0	0	42	16	27.5862
KATNA1	0	genome.wustl.edu	37	6	149922727	149922729	+	Splice_Site	DEL	CAC	CAC	-			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	CAC	CAC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	6	149922727	149922729	CAC	-	DEL	KATNA1	ENST00000335647	human	ensembl	74_37	-1	known	splice_site_del	c.888+1_888+1	e6+1	1.000:1.000:1.000	-	-	-	no_errors	KATNA1	HGNC	ENSG00000186625				111	0	0	93	16	14.6789
ZNF716	0	genome.wustl.edu	37	7	57529418	57529421	+	Frame_Shift_Del	DEL	TAAC	TAAC	-			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	TAAC	TAAC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	7	57529418	57529421	TAAC	-	DEL	ZNF716	ENST00000420713	human	ensembl	74_37	+1	known	frame_shift_del	c.1251_1254	p.N418fs	0.811:0.385:0.033:0.024	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF716	HGNC	ENSG00000182111				71	0	0	58	10	14.7059
CAMSAP1	0	genome.wustl.edu	37	9	138715799	138715800	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	9	138715799	138715800	-	T	INS	CAMSAP1	ENST00000409386	human	ensembl	74_37	-1	known	frame_shift_ins	c.1430_1429	p.T477fs	0.022:0.003	NULL	pfam_CKK_domain,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_PRC_barrel-like,superfamily_CH-domain	-	no_errors	CAMSAP1	HGNC	ENSG00000130559				14	0	0	8	4	33.3333
ZNF81	0	genome.wustl.edu	37	X	47775984	47775984	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-7704-01A-11D-2053-08	TCGA-BR-7704-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c1862014-6b34-43d3-bc2f-fa85dc6f5806	9bd9dfe3-570c-469d-8f0e-b75d2147f078	X	47775984	47775984	T	-	DEL	ZNF81	ENST00000338637	human	ensembl	74_37	+1	known	frame_shift_del	c.1939	p.F647fs	0.998	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF81	HGNC	ENSG00000197779				44	0	0	39	20	33.8983
